BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000176
         (1924 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|297739784|emb|CBI29966.3| unnamed protein product [Vitis vinifera]
          Length = 1862

 Score = 2739 bits (7100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1386/1911 (72%), Positives = 1600/1911 (83%), Gaps = 70/1911 (3%)

Query: 18   KFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAE 77
            K   ASK  FK   +Q N+AV ++ LAL  +DDVP FPRGGG  L+++E D I AEVDAE
Sbjct: 18   KLRGASKKPFKPRMRQ-NEAVPSESLALQMEDDVPDFPRGGGSLLSRQEHDAIRAEVDAE 76

Query: 78   FEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKL 137
            FEA ER   KKNK  KK  +  A E  DD+GSLFGDGI+GKLPR+ANKITLKNIS GMKL
Sbjct: 77   FEAGERKTKKKNKNAKKTKKNYALE--DDMGSLFGDGITGKLPRFANKITLKNISPGMKL 134

Query: 138  WGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIV 197
            WGVVAEVNEKDL I LPGGLRGL RA++A DP+  NEI+  E   LP IFH+GQLVSC+V
Sbjct: 135  WGVVAEVNEKDLGISLPGGLRGLVRASEAFDPLFSNEIKDAEGIFLPRIFHIGQLVSCVV 194

Query: 198  LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
            LQLDDDKKE GKR+IWLSLRLSLL+KG +L+ +QEGMVLTAYVKSIEDHGYILHFGLPSF
Sbjct: 195  LQLDDDKKEKGKRRIWLSLRLSLLHKGFTLDALQEGMVLTAYVKSIEDHGYILHFGLPSF 254

Query: 258  TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
            TGFLP+++ AEN  I++  G +LQGV+RSID+  KVVYLSSDPDT+SKCVTKDLKGISID
Sbjct: 255  TGFLPKSSQAEN--IEINTGQILQGVIRSIDKAHKVVYLSSDPDTISKCVTKDLKGISID 312

Query: 318  LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
            LL+PGMMV+ RVQS  ENGVMLSFLTYFTGTVDIFHLQ TFP++NWK+DYNQ+KKVNARI
Sbjct: 313  LLIPGMMVNARVQSTFENGVMLSFLTYFTGTVDIFHLQTTFPSSNWKDDYNQNKKVNARI 372

Query: 378  LFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
            LF+DP++RAVGLTLNP+L++N+APP  VK GDIYD SKV+RVDRGLGLLL++PSTP STP
Sbjct: 373  LFIDPSTRAVGLTLNPHLVNNKAPPCPVKTGDIYDHSKVIRVDRGLGLLLEVPSTPASTP 432

Query: 438  AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
             YVT+ DVA+EEVRK+EKKYKEGS VRVRILGFR+LEGLA G LKASAFEG VFTHSDVK
Sbjct: 433  TYVTLFDVADEEVRKMEKKYKEGSHVRVRILGFRNLEGLAMGTLKASAFEGSVFTHSDVK 492

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
            PGMVVK KVIAVDSFGAIVQFP GVKALCPL HMSEF+IVKP KKFKVGAEL+FRVLG K
Sbjct: 493  PGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAELIFRVLGCK 552

Query: 558  SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
            SKRITVTHKKTL+KSKL I+SSY +AT+ LITHGWITKIEKHGCF+RFYNGVQGFAP SE
Sbjct: 553  SKRITVTHKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNGVQGFAPSSE 612

Query: 618  LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 677
            LGL+PGC  S MYHVGQVVKCR+  S+PASRRINLSF++KPTR+SEDD+VKLGS+V GVV
Sbjct: 613  LGLEPGCNTSLMYHVGQVVKCRVKGSVPASRRINLSFIIKPTRISEDDMVKLGSVVGGVV 672

Query: 678  DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
            D VTP+A++V V AKGY KGTI TEHLADH  HA +MKS +KPGYEFDQLLVLD E +N 
Sbjct: 673  DRVTPHAIIVNVSAKGYLKGTISTEHLADHQGHAALMKSTLKPGYEFDQLLVLDVEGNNF 732

Query: 738  LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
            +LSAKYSLINSAQQLP D + IHPNSVVHGY+CNIIETGCFVRFLGRLTGF+PR+K +D 
Sbjct: 733  ILSAKYSLINSAQQLPLDLTQIHPNSVVHGYICNIIETGCFVRFLGRLTGFSPRNKVMDD 792

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
            QRA  S+ +++GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF+QE+FLLEEKIA LQ
Sbjct: 793  QRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFLLEEKIAKLQ 852

Query: 858  SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESG 917
             S    SELKW EGF IG+VIEGK+H++ DFGVV+SFE+++DV+GFITH+QL   T E G
Sbjct: 853  LSDSEHSELKWAEGFNIGTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQL---TAERG 909

Query: 918  SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
            S +QA +LDVAK ERLVDLSLK  F+DR +E +SN QA KKKR+REA K+L  HQTVNAI
Sbjct: 910  STVQAVVLDVAKTERLVDLSLKPEFLDRHKEDSSNSQAGKKKRRREAYKELQPHQTVNAI 969

Query: 978  VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
            VEIVKENYL  S                      +KQFL+GQSVIA+VMALPS ST GRL
Sbjct: 970  VEIVKENYLASSF-------------------IARKQFLHGQSVIASVMALPSPSTVGRL 1010

Query: 1038 LLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
            LL+LK++SE TETSSSKRAKKKSSY+VGSLVQAEITEIKPLELRLKFGIGFHGR+HITEV
Sbjct: 1011 LLVLKSVSEATETSSSKRAKKKSSYNVGSLVQAEITEIKPLELRLKFGIGFHGRVHITEV 1070

Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLTVS-EIGSKL 1154
             D+  NV+EN FSNF+IGQTV+ARI+AK+NK +   K+  WELSIKP MLT S E+ +KL
Sbjct: 1071 CDE--NVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWELSIKPEMLTGSIEVENKL 1128

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
            +  E  +S GQRVTGYVYKV+NEW  LTISRH+KAQLF+LD++ EP+ELQEFQ+RF +GK
Sbjct: 1129 VDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTSCEPNELQEFQKRFEVGK 1188

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
            AV+G+VLS NKEKKLLR+VL  F              N+   IH+GD +GGRISKIL GV
Sbjct: 1189 AVSGYVLSANKEKKLLRMVLHQFS-------------NLIPHIHKGDTLGGRISKILPGV 1235

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL+VQIGPHLYG+VHFTELK+  VSDPLSGY EGQFVKCKVLEI  + +GT HV+LSL 
Sbjct: 1236 GGLLVQIGPHLYGKVHFTELKDSWVSDPLSGYHEGQFVKCKVLEIGHSEKGTVHVDLSLW 1295

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            SSL+GM S NS             +EKI++L  +M+VQGYVKNVTSKGCFI+LSRKLDA+
Sbjct: 1296 SSLNGMHSPNS------------RVEKIDNLHSDMLVQGYVKNVTSKGCFILLSRKLDAR 1343

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            +LL+NLSDGYVE PE+EFPIGKLV+GRVLSVEPLS+RVEVTLKTS + +  +SE+N+ S+
Sbjct: 1344 ILLANLSDGYVEKPEREFPIGKLVSGRVLSVEPLSRRVEVTLKTSSATSVQKSEVNDFSS 1403

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
            + VGDI+ G IKRVESYGLFITI++TN+VGLCH+SELS+DH+ NIET Y+AGE+V  KIL
Sbjct: 1404 ILVGDIIFGTIKRVESYGLFITIDDTNMVGLCHISELSDDHISNIETKYKAGERVAAKIL 1463

Query: 1515 KVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMD 1574
            KVD+E+ RISLGMK+SY K    N               V     S+ LEN+S  +Q++D
Sbjct: 1464 KVDEERHRISLGMKNSYIKETTQNNGF------------VDDTQLSTFLENNSREIQNLD 1511

Query: 1575 MESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHA 1633
            +E ED    VL+Q+ESRAS+ PLEV+LDD    ++D+ + QN  +T+E  TIDEK+ R A
Sbjct: 1512 VEYEDEEYPVLSQVESRASILPLEVDLDDVNHSNLDDAVGQNHIYTNETNTIDEKSKRRA 1571

Query: 1634 KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEK 1693
            KKK KEE+EQEIRAAEERL+  D PRT DEFE+LVR SPNSSF+WIKYMA MLS+AD+EK
Sbjct: 1572 KKKAKEEKEQEIRAAEERLMLNDVPRTADEFEKLVRGSPNSSFLWIKYMALMLSLADIEK 1631

Query: 1694 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1753
            ARSIAERAL+TINIREE+EKLNIW+AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL
Sbjct: 1632 ARSIAERALRTINIREESEKLNIWMAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1691

Query: 1754 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLP 1813
            ALLG+YERTEQ+KLADELL KM KKFKHSCKVWLRRVQ +LKQ Q+GVQ V+ RALL LP
Sbjct: 1692 ALLGMYERTEQHKLADELLEKMTKKFKHSCKVWLRRVQNVLKQHQDGVQPVINRALLCLP 1751

Query: 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1873
            RHKHIKFISQTAILEFK+GV DRGRSMFEG+L EYPKRTDLWS+YLDQEIRLGD+D+IR 
Sbjct: 1752 RHKHIKFISQTAILEFKSGVPDRGRSMFEGMLREYPKRTDLWSVYLDQEIRLGDIDIIRA 1811

Query: 1874 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            LFERAI+LSL P+KMKFLFKKYLEYEKS G+EERIE VK+KAMEY  STLA
Sbjct: 1812 LFERAINLSLEPRKMKFLFKKYLEYEKSQGDEERIESVKRKAMEYANSTLA 1862


>gi|359481849|ref|XP_002276633.2| PREDICTED: protein RRP5 homolog [Vitis vinifera]
          Length = 1879

 Score = 2737 bits (7095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1391/1921 (72%), Positives = 1607/1921 (83%), Gaps = 73/1921 (3%)

Query: 18   KFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAE 77
            K   ASK  FK   +Q N+AV ++ LAL  +DDVP FPRGGG  L+++E D I AEVDAE
Sbjct: 18   KLRGASKKPFKPRMRQ-NEAVPSESLALQMEDDVPDFPRGGGSLLSRQEHDAIRAEVDAE 76

Query: 78   FEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKL 137
            FEA ER   KKNK  KK  +  A E  DD+GSLFGDGI+GKLPR+ANKITLKNIS GMKL
Sbjct: 77   FEAGERKTKKKNKNAKKTKKNYALE--DDMGSLFGDGITGKLPRFANKITLKNISPGMKL 134

Query: 138  WGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIV 197
            WGVVAEVNEKDL I LPGGLRGL RA++A DP+  NEI+  E   LP IFH+GQLVSC+V
Sbjct: 135  WGVVAEVNEKDLGISLPGGLRGLVRASEAFDPLFSNEIKDAEGIFLPRIFHIGQLVSCVV 194

Query: 198  LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
            LQLDDDKKE GKR+IWLSLRLSLL+KG +L+ +QEGMVLTAYVKSIEDHGYILHFGLPSF
Sbjct: 195  LQLDDDKKEKGKRRIWLSLRLSLLHKGFTLDALQEGMVLTAYVKSIEDHGYILHFGLPSF 254

Query: 258  TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
            TGFLP+++ A+ + I++  G +LQGV+RSID+  KVVYLSSDPDT+SKCVTKDLKGISID
Sbjct: 255  TGFLPKSSQADQN-IEINTGQILQGVIRSIDKAHKVVYLSSDPDTISKCVTKDLKGISID 313

Query: 318  LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
            LL+PGMMV+ RVQS  ENGVMLSFLTYFTGTVDIFHLQ TFP++NWK+DYNQ+KKVNARI
Sbjct: 314  LLIPGMMVNARVQSTFENGVMLSFLTYFTGTVDIFHLQTTFPSSNWKDDYNQNKKVNARI 373

Query: 378  LFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
            LF+DP++RAVGLTLNP+L++N+APP  VK GDIYD SKV+RVDRGLGLLL++PSTP STP
Sbjct: 374  LFIDPSTRAVGLTLNPHLVNNKAPPCPVKTGDIYDHSKVIRVDRGLGLLLEVPSTPASTP 433

Query: 438  AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
             YVT               YKEGS VRVRILGFR+LEGLA G LKASAFEG VFTHSDVK
Sbjct: 434  TYVT---------------YKEGSHVRVRILGFRNLEGLAMGTLKASAFEGSVFTHSDVK 478

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
            PGMVVK KVIAVDSFGAIVQFP GVKALCPL HMSEF+IVKP KKFKVGAEL+FRVLG K
Sbjct: 479  PGMVVKAKVIAVDSFGAIVQFPSGVKALCPLRHMSEFDIVKPRKKFKVGAELIFRVLGCK 538

Query: 558  SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
            SKRITVTHKKTL+KSKL I+SSY +AT+ LITHGWITKIEKHGCF+RFYNGVQGFAP SE
Sbjct: 539  SKRITVTHKKTLLKSKLGIISSYTDATEGLITHGWITKIEKHGCFIRFYNGVQGFAPSSE 598

Query: 618  LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 677
            LGL+PGC  S MYHVGQVVKCR+  S+PASRRINL           +D+VKLGS+V GVV
Sbjct: 599  LGLEPGCNTSLMYHVGQVVKCRVKGSVPASRRINL-----------NDMVKLGSVVGGVV 647

Query: 678  DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
            D VTP+A++V V AKGY KGTI TEHLADH  HA +MKS +KPGYEFDQLLVLD E +N 
Sbjct: 648  DRVTPHAIIVNVSAKGYLKGTISTEHLADHQGHAALMKSTLKPGYEFDQLLVLDVEGNNF 707

Query: 738  LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
            +LSAKYSLINSAQQLP D + IHPNSVVHGY+CNIIETGCFVRFLGRLTGF+PR+K +D 
Sbjct: 708  ILSAKYSLINSAQQLPLDLTQIHPNSVVHGYICNIIETGCFVRFLGRLTGFSPRNKVMDD 767

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
            QRA  S+ +++GQSVRSNILDVNSETGRITLSLKQSCCSSTDASF+QE+FLLEEKIA LQ
Sbjct: 768  QRAVPSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFLLEEKIAKLQ 827

Query: 858  SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESG 917
             S    SELKW EGF IG+VIEGK+H++ DFGVV+SFE+++DV+GFITH+QL   T E G
Sbjct: 828  LSDSEHSELKWAEGFNIGTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQL---TAERG 884

Query: 918  SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
            S +QA +LDVAK ERLVDLSLK  F+DR +E +SN QA KKKR+REA K+L  HQTVNAI
Sbjct: 885  STVQAVVLDVAKTERLVDLSLKPEFLDRHKEDSSNSQAGKKKRRREAYKELQPHQTVNAI 944

Query: 978  VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
            VEIVKENYLVLSLPEYN++IGYASVSDYNTQKF QKQFL+GQSVIA+VMALPS ST GRL
Sbjct: 945  VEIVKENYLVLSLPEYNYAIGYASVSDYNTQKFAQKQFLHGQSVIASVMALPSPSTVGRL 1004

Query: 1038 LLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
            LL+LK++SE TETSSSKRAKKKSSY+VGSLVQAEITEIKPLELRLKFGIGFHGR+HITEV
Sbjct: 1005 LLVLKSVSEATETSSSKRAKKKSSYNVGSLVQAEITEIKPLELRLKFGIGFHGRVHITEV 1064

Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLTVS-EIGSKL 1154
             D+  NV+EN FSNF+IGQTV+ARI+AK+NK +   K+  WELSIKP MLT S E+ +KL
Sbjct: 1065 CDE--NVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWELSIKPEMLTGSIEVENKL 1122

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
            +  E  +S GQRVTGYVYKV+NEW  LTISRH+KAQLF+LD++ EP+ELQEFQ+RF +GK
Sbjct: 1123 VDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTSCEPNELQEFQKRFEVGK 1182

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQ--DGISD-KTVDISN-------DNMQTFIHEGDIVG 1264
            AV+G+VLS NKEKKLLR+VL  F   +G  D K ++I N       +N+   IH+GD +G
Sbjct: 1183 AVSGYVLSANKEKKLLRMVLHQFSVSNGTLDGKVLNIDNQHCNPPIENLIPHIHKGDTLG 1242

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
            GRISKIL GVGGL+VQIGPHLYG+VHFTELK+  VSDPLSGY EGQFVKCKVLEI  + +
Sbjct: 1243 GRISKILPGVGGLLVQIGPHLYGKVHFTELKDSWVSDPLSGYHEGQFVKCKVLEIGHSEK 1302

Query: 1325 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1384
            GT HV+LSL SSL+GM S NS             +EKI++L  +M+VQGYVKNVTSKGCF
Sbjct: 1303 GTVHVDLSLWSSLNGMHSPNS------------RVEKIDNLHSDMLVQGYVKNVTSKGCF 1350

Query: 1385 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1444
            I+LSRKLDA++LL+NLSDGYVE PE+EFPIGKLV+GRVLSVEPLS+RVEVTLKTS + + 
Sbjct: 1351 ILLSRKLDARILLANLSDGYVEKPEREFPIGKLVSGRVLSVEPLSRRVEVTLKTSSATSV 1410

Query: 1445 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
             +SE+N+ S++ VGDI+ G IKRVESYGLFITI++TN+VGLCH+SELS+DH+ NIET Y+
Sbjct: 1411 QKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMVGLCHISELSDDHISNIETKYK 1470

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLE 1564
            AGE+V  KILKVD+E+ RISLGMK+SY K    N               V     S+ LE
Sbjct: 1471 AGERVAAKILKVDEERHRISLGMKNSYIKETTQNNGF------------VDDTQLSTFLE 1518

Query: 1565 NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAK 1623
            N+S  +Q++D+E ED    VL+Q+ESRAS+ PLEV+LDD    ++D+ + QN  +T+E  
Sbjct: 1519 NNSREIQNLDVEYEDEEYPVLSQVESRASILPLEVDLDDVNHSNLDDAVGQNHIYTNETN 1578

Query: 1624 TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMA 1683
            TIDEK+ R AKKK KEE+EQEIRAAEERL+  D PRT DEFE+LVR SPNSSF+WIKYMA
Sbjct: 1579 TIDEKSKRRAKKKAKEEKEQEIRAAEERLMLNDVPRTADEFEKLVRGSPNSSFLWIKYMA 1638

Query: 1684 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1743
             MLS+AD+EKARSIAERAL+TINIREE+EKLNIW+AYFNLENEYGNPPEEAVVKVFQRAL
Sbjct: 1639 LMLSLADIEKARSIAERALRTINIREESEKLNIWMAYFNLENEYGNPPEEAVVKVFQRAL 1698

Query: 1744 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA 1803
            QYCDPKKVHLALLG+YERTEQ+KLADELL KM KKFKHSCKVWLRRVQ +LKQ Q+GVQ 
Sbjct: 1699 QYCDPKKVHLALLGMYERTEQHKLADELLEKMTKKFKHSCKVWLRRVQNVLKQHQDGVQP 1758

Query: 1804 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863
            V+ RALL LPRHKHIKFISQTAILEFK+GV DRGRSMFEG+L EYPKRTDLWS+YLDQEI
Sbjct: 1759 VINRALLCLPRHKHIKFISQTAILEFKSGVPDRGRSMFEGMLREYPKRTDLWSVYLDQEI 1818

Query: 1864 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
            RLGD+D+IR LFERAI+LSL P+KMKFLFKKYLEYEKS G+EERIE VK+KAMEY  STL
Sbjct: 1819 RLGDIDIIRALFERAINLSLEPRKMKFLFKKYLEYEKSQGDEERIESVKRKAMEYANSTL 1878

Query: 1924 A 1924
            A
Sbjct: 1879 A 1879


>gi|356533079|ref|XP_003535096.1| PREDICTED: protein RRP5 homolog [Glycine max]
          Length = 1885

 Score = 2470 bits (6402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1263/1932 (65%), Positives = 1541/1932 (79%), Gaps = 61/1932 (3%)

Query: 1    MAASSRKSQKKS-SKDGPKFNKASKNQFKNSKKQINDAVEA---QDLALPPDDDVPVFPR 56
            MA  S+K QKK+ S D PK +KASK  FK  K++ N AV A   + L+LP +D+VP FPR
Sbjct: 1    MAPHSKKPQKKNDSVDKPKIDKASKKIFKPKKREQNIAVAAAKSEALSLPLEDEVPDFPR 60

Query: 57   GGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGIS 116
            GG  S   R   +       EF A +     + KKK K    K+NE  DD GSL G+GI+
Sbjct: 61   GGEFSAKGRNDYD-------EFGAEDPSKKTRKKKKGKNASGKSNEAADDWGSLSGNGIT 113

Query: 117  GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE 176
            GKLPR  NKITL+NI+ GMKLWGVVAEVNEKDLV+ LPGGLRGL  A+DA+DPI D++IE
Sbjct: 114  GKLPRRVNKITLRNITPGMKLWGVVAEVNEKDLVVSLPGGLRGLVHASDAVDPIFDDKIE 173

Query: 177  ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
              E   L  +F VGQLVSC+VL+LDDDKKE G RKIWLSLRLSLL+K  +L+ VQEGMVL
Sbjct: 174  VGEI-FLSGVFCVGQLVSCVVLRLDDDKKEKGSRKIWLSLRLSLLHKNYNLDVVQEGMVL 232

Query: 237  TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 296
             AYVKSIEDHGYILHFGLP F GFLP+N+ A   G +VK G LLQG+VRSID+ RKVVYL
Sbjct: 233  AAYVKSIEDHGYILHFGLPFFMGFLPKNSSAGWGG-EVKIGKLLQGLVRSIDKVRKVVYL 291

Query: 297  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 356
            SSDPDT++K VTKDL+G+SIDLLVPGM+V+  V+SILENGVMLSFLTYFTGTVD+FHLQN
Sbjct: 292  SSDPDTITKSVTKDLRGLSIDLLVPGMLVNACVKSILENGVMLSFLTYFTGTVDLFHLQN 351

Query: 357  TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKV 416
             +P  NWK+  ++ +KV +RILF+DP+SRAVGLTLNP+L+ NRAPPSHVK+GDIYD SKV
Sbjct: 352  IYPGKNWKDKCSESQKVVSRILFIDPSSRAVGLTLNPHLVQNRAPPSHVKIGDIYDNSKV 411

Query: 417  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 476
            VRVDRGLGLLL++PS P  TPA+V+               YKEG+ VRVRILG R+LEG+
Sbjct: 412  VRVDRGLGLLLEVPSIPEPTPAFVS---------------YKEGNHVRVRILGLRYLEGI 456

Query: 477  ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
            ATG+LKASA E  VFTHSDVKPGMVVK K+++VDSFGAIVQ PGGVKALCPL HMSE EI
Sbjct: 457  ATGVLKASALEEEVFTHSDVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEI 516

Query: 537  VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
             KPGKKFKVGAELVFRVLG KSKR+TVTHKKTLVKSKL I+SSYA+ATD LITHGWITKI
Sbjct: 517  SKPGKKFKVGAELVFRVLGCKSKRVTVTHKKTLVKSKLGIISSYADATDGLITHGWITKI 576

Query: 597  EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            E HGCFVRFYNGVQGFAPRSELGL+PG +P ++Y+VGQ VKCR++S IPASRRINL    
Sbjct: 577  EVHGCFVRFYNGVQGFAPRSELGLEPGADPGTVYNVGQAVKCRVISCIPASRRINL---- 632

Query: 657  KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716
                   +D+V LGSLVSG VD +T NAVVVYV A G+S+GTI  EHLADH   A +M S
Sbjct: 633  -------NDMVTLGSLVSGAVDRITSNAVVVYVNASGFSRGTISMEHLADHHGQAILMHS 685

Query: 717  VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
            V+KPGY FDQLLVLD + +NL+LSAK SLI  AQQ+P+D + IHPNSVVHGY+CN+IE+G
Sbjct: 686  VLKPGYNFDQLLVLDVKGNNLILSAKSSLIKHAQQIPADINQIHPNSVVHGYICNLIESG 745

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            CFVRFLG LTGFAPR+KA D Q++++ + YY+GQSVRSNI +V+SETGR+TLSLKQ+ CS
Sbjct: 746  CFVRFLGHLTGFAPRNKAADDQKSNILEAYYIGQSVRSNISNVSSETGRVTLSLKQTACS 805

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            STDASF+Q++FL+++KIA L+      S+ KW EGF IG V +GKV    D G+V+SFE 
Sbjct: 806  STDASFIQDYFLMDDKIARLEYCGSGASDTKWDEGFNIGMVAKGKVKAVEDVGLVISFEH 865

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
            ++DV+GFI ++QLAG  +ESGS+++A +LDV KA++LV+L+LK  FI+R +E++ +R   
Sbjct: 866  YNDVFGFIANYQLAGTILESGSIVEALVLDVGKADKLVELTLKPEFINRSKESSISR-TN 924

Query: 957  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 1016
            KKKR+REASKDL +HQTVNA+VEIVKENYLVLS+PE +++IGYASVSDYN Q+FP KQ+ 
Sbjct: 925  KKKRRREASKDLVLHQTVNAVVEIVKENYLVLSIPENDYTIGYASVSDYNAQRFPHKQYQ 984

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
            NGQSV+ATVMALPS  T+GRLLLL+  ++ET +SS +  KK S   VG+LV+AEIT+IK 
Sbjct: 985  NGQSVVATVMALPSPETSGRLLLLVDVVNETSSSSKRTKKKSSYK-VGTLVEAEITDIKT 1043

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD-MKKSFL 1135
            LEL+LKFG G +GRIHITEV     NV+EN FS++K+GQTVTARI+AK N+ D  +K   
Sbjct: 1044 LELKLKFGFGLYGRIHITEVY--YGNVLENPFSSYKVGQTVTARIVAKPNESDGNRKGSQ 1101

Query: 1136 WELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194
            WELS++P M+T  S+I    + E  +  IGQ V GYVYKV++EW  LTISR+++AQL+IL
Sbjct: 1102 WELSVRPEMVTGSSDIDD--VSENLEFKIGQCVAGYVYKVESEWVWLTISRNVRAQLYIL 1159

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD---GISDKTV-DISN 1250
            DSA EPSEL++FQ R+H+G+ V+GH+LS+N EKKLLRLV+RPF     G S++ + ++ +
Sbjct: 1160 DSATEPSELEDFQNRYHVGQPVSGHILSVNMEKKLLRLVVRPFSTLSCGTSEEPLTNVVD 1219

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
             ++  ++HEGDI+GGR+SKIL GVGGL+VQ+GP  YG+VHFTEL +  V DPLSGY E Q
Sbjct: 1220 KDLTAYVHEGDILGGRVSKILPGVGGLLVQVGPRTYGKVHFTELADTWVPDPLSGYHEEQ 1279

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
            FVKC VLE+S TV+GT HV+LSL SS   +S  ++      V+   K +EKIEDL P+MI
Sbjct: 1280 FVKCIVLEVSHTVKGTIHVDLSLGSSNVKLSQDSA------VNANSKCVEKIEDLHPDMI 1333

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            V+GY+KNVTSKGCFIMLSRK+DAK+LLSNLS+ YV+ PEKEFP+GKLV GRV SVEPLS 
Sbjct: 1334 VKGYIKNVTSKGCFIMLSRKIDAKILLSNLSEQYVQEPEKEFPVGKLVIGRVTSVEPLSN 1393

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            RVEVTLK S +    +SEI +LS  HVGD+V G+IKRVES+GLFI I+NTN+VGLCH+SE
Sbjct: 1394 RVEVTLKMSTAPNIPKSEIIDLSKFHVGDVVSGRIKRVESFGLFIAIDNTNMVGLCHISE 1453

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +S++ ++NIE  YRAGE+VK +ILKVD+E+ RISLGMK+SY + +   LQ+ S+EESDE 
Sbjct: 1454 ISDNRIENIEANYRAGERVKARILKVDEERHRISLGMKNSYMRGET-VLQIPSKEESDEP 1512

Query: 1551 IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMD 1609
            I  V      + + +S     ++D+E E     +L+Q + RA +PPL+V LDD +Q D +
Sbjct: 1513 I--VDGMKSITSMNSSLFGTSNIDVEDEINQFPILSQAQERADIPPLDVALDDFDQFDAN 1570

Query: 1610 NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVR 1669
            N  SQ++ H +E   ++EK+ R  KKK KEERE++IRAAEERLLE D PRT DEFERL+R
Sbjct: 1571 NANSQSEEHANEEDIVNEKHKRREKKKAKEEREKQIRAAEERLLEDDVPRTADEFERLIR 1630

Query: 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1729
            SSPNSSF WIKYM FM+SMADVEKARSIAERAL+TINIREENEKLNIW AYFNLEN+YGN
Sbjct: 1631 SSPNSSFTWIKYMDFMVSMADVEKARSIAERALRTINIREENEKLNIWKAYFNLENKYGN 1690

Query: 1730 PPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR 1789
            P EEAV+KVFQRALQY DPKKV+LALLG+YERTEQ+ LADELL KM KKFKHSCKVWLRR
Sbjct: 1691 PREEAVMKVFQRALQYNDPKKVYLALLGMYERTEQHNLADELLNKMTKKFKHSCKVWLRR 1750

Query: 1790 VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849
            +Q LLKQ ++G+Q V+ RA LSLP+HKHIKF SQTAILEFK G  DRGRSMFE IL EYP
Sbjct: 1751 IQSLLKQNKDGIQPVIDRASLSLPKHKHIKFFSQTAILEFKVGFPDRGRSMFEKILREYP 1810

Query: 1850 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1909
            KRTDLWS+YLDQEI+  D D+I  LFERA+SLSLPPKKMKFLFKKYL+YE S G++ERIE
Sbjct: 1811 KRTDLWSVYLDQEIQHKDEDIIHALFERAVSLSLPPKKMKFLFKKYLDYEMSQGDQERIE 1870

Query: 1910 YVKQKAMEYVES 1921
             VK+KA+EYVES
Sbjct: 1871 SVKRKAIEYVES 1882


>gi|449453908|ref|XP_004144698.1| PREDICTED: protein RRP5 homolog [Cucumis sativus]
          Length = 1898

 Score = 2355 bits (6104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1224/1950 (62%), Positives = 1495/1950 (76%), Gaps = 78/1950 (4%)

Query: 1    MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
            MA  SRKSQ     DG KFNK SK  F NSKK+ ++  + + ++L  +DDVP FPRGGG 
Sbjct: 1    MAPPSRKSQ-----DGSKFNKHSKKPF-NSKKKTSETAKPETVSLQIEDDVPDFPRGGGG 54

Query: 61   SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLP 120
             ++Q + +++ AE D EF+  +  +  K  KK+    RK     DDL SL  +G+ G LP
Sbjct: 55   YMSQNKGEKVRAEGDKEFQNDDLKMTTKRGKKR----RKHPSNGDDLESLLNNGVVGNLP 110

Query: 121  RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANED 180
            +YANKITLKNI+  MK WGVVAEVN+KDLVI LPGGLRGL  AA+A DPIL+ E+E  E 
Sbjct: 111  KYANKITLKNINPRMKFWGVVAEVNKKDLVISLPGGLRGLVSAAEAFDPILEKEVEDTEH 170

Query: 181  NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
            +LLP +FHVGQLV C+VL++DDDKKE GKRKIWLSLRLS+LYK  +L+ +QEGMVLT+YV
Sbjct: 171  DLLPVMFHVGQLVPCVVLKVDDDKKESGKRKIWLSLRLSMLYKDFTLDLLQEGMVLTSYV 230

Query: 241  KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
            KSIEDHGYILHFGL SFTGFLP+   +    + +  G LLQ VVRSID+TRKVVY SSD 
Sbjct: 231  KSIEDHGYILHFGLTSFTGFLPKTKQSGKKSL-LHVGQLLQCVVRSIDKTRKVVYFSSDQ 289

Query: 301  DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
            D VS  V KDLKGISIDLL+PGMMVS RVQS LENG++LSFLTYF GTVD+FHLQN+F +
Sbjct: 290  DIVSSSVAKDLKGISIDLLIPGMMVSARVQSTLENGILLSFLTYFNGTVDMFHLQNSFHS 349

Query: 361  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 420
            +NWK+ YNQ+ K+NARILF+DP++RAVGLTL P+L+ N+A P HV++GDIYD +KVVRVD
Sbjct: 350  SNWKDFYNQNMKMNARILFIDPSTRAVGLTLIPHLVRNKAAPPHVRIGDIYDSAKVVRVD 409

Query: 421  RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
            RG GLLL++PS+P STP +V+               +KEGS VRVRILGFRHLEGLA G 
Sbjct: 410  RGFGLLLEVPSSPESTPTFVS---------------FKEGSRVRVRILGFRHLEGLAIGT 454

Query: 481  LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
            LKASAFEG VF++SDVKPG +++ KVI VD FGAIVQFPGG+KALCPL HMSEFEI KP 
Sbjct: 455  LKASAFEGPVFSYSDVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIAKPR 514

Query: 541  KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            KKFKVGAEL+FRVLG KSKRITVTHKKTLVKSKL +LSSYA+AT  L+THGWITKIEKHG
Sbjct: 515  KKFKVGAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIEKHG 574

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
            CFVRFYNGVQGFAPR ELG++PG +PSS YH+GQV+KCRI SS  +S+RI+L        
Sbjct: 575  CFVRFYNGVQGFAPRFELGIEPGSDPSSTYHIGQVIKCRITSSTHSSKRISL-------- 626

Query: 661  VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
               +  V+LG +V+GVVD +T   V +Y+    YS+G I TEHL+DH  HA+ +KSV+KP
Sbjct: 627  ---NTKVELGCIVTGVVDEITETHVTLYINRTDYSRGRISTEHLSDHQAHASSIKSVLKP 683

Query: 721  GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            GY+FDQLLVL  E  +L+LSAK SLI  A  LPSD+SH++P S++HG++CNIIE GCFVR
Sbjct: 684  GYQFDQLLVLAIEGESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICNIIEAGCFVR 743

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            FLGRLTGF+PR+KA+  Q+  L +TYY+GQSVRSN++DV+ ETGRITLSLKQS C STDA
Sbjct: 744  FLGRLTGFSPRNKAMQDQKLYLRETYYIGQSVRSNVVDVSGETGRITLSLKQSTCFSTDA 803

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            SF+QE F  EEKIA LQS      E  W E F IGSV+EG+V E  D GV +SFE++ DV
Sbjct: 804  SFIQEFFSTEEKIAKLQSL----DESNWAEEFAIGSVVEGEVQEVKDIGVTISFEKYHDV 859

Query: 901  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
            +GFI  H L+G+ VE+GS IQAA+LDV+K ERLVDLSLK   +D++   +S+RQ  +KKR
Sbjct: 860  FGFIALHGLSGSIVETGSTIQAAVLDVSKTERLVDLSLKPELVDKW-GGSSSRQTNRKKR 918

Query: 961  KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQS 1020
            K EA KDL ++QTV+ +VE VKENYLVLSLPE+ H+IGYAS  DYNTQ+  QK F  GQS
Sbjct: 919  KAEAPKDLEMNQTVHTVVEAVKENYLVLSLPEFGHAIGYASTYDYNTQRLHQKHFTVGQS 978

Query: 1021 VIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLEL 1079
            V+ATV+ALP  ST GRLLLLLK+ISE   T  SKR++K SS +VGSLV AEI +++PLE+
Sbjct: 979  VVATVVALPCPSTFGRLLLLLKSISEAIVTPGSKRSRKNSSCEVGSLVHAEIIDVQPLEM 1038

Query: 1080 RLKFGIGFHGRIHITEVNDDKSNV----VENLFSNFKIGQTVTARIIAKSNKPDMK-KSF 1134
            RLKFG+G  GRIH+TE     SN      E  FSNF++GQTV ARI+A++N    K K +
Sbjct: 1039 RLKFGVGLRGRIHVTEFCAQVSNTPDEASEAPFSNFRVGQTVVARIVAEANHSASKGKGY 1098

Query: 1135 LWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
            LWELS+KP +L   S +G +++ E+   SIGQRVT YV  V+ +WA L ++R + AQLFI
Sbjct: 1099 LWELSVKPEVLKDFSAVGGEIVNEDLGFSIGQRVTAYVSNVNGDWAWLAVTRRVSAQLFI 1158

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR---PFQDGISD----KTV 1246
            LDS+ EPSELQEF + F++GKAV+G++ +I  EKK+LRLVL        G SD    K  
Sbjct: 1159 LDSSSEPSELQEFSKHFYVGKAVSGYISNIIGEKKILRLVLHHLSAISSGKSDEENSKIS 1218

Query: 1247 DISNDNMQTFI---HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1303
            ++  D  +  I   +EGDIVGGRISKIL GVGGL+VQIGPHL+GRVH+TEL +  V DPL
Sbjct: 1219 NLPTDVCKKVICHLNEGDIVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPL 1278

Query: 1304 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1363
            SGY EGQFVKCKV+EI+  V+GT H++LSLRSS   +   N    + +    G+   KIE
Sbjct: 1279 SGYKEGQFVKCKVIEITHAVKGTTHIDLSLRSSAGILCQKNIECSNHENIASGR--VKIE 1336

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D+  +M VQGYVKN++ KGCFIMLSR L+AK+LLSNLSDGY+++PEKEFP GKLV GR+L
Sbjct: 1337 DIHAHMEVQGYVKNISPKGCFIMLSRGLEAKILLSNLSDGYIDNPEKEFPTGKLVRGRIL 1396

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1483
            SVEPLSKRVEVTLK+     A +   N+L +   GDI+ G+IKRVES+GLFI+I+NT++V
Sbjct: 1397 SVEPLSKRVEVTLKSVTETGALRGSNNDLRSFSAGDIISGRIKRVESFGLFISIDNTDVV 1456

Query: 1484 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1543
            GLCHVSE+S+D V+++E  Y AG+ VK K+LKVD+++ RI+LGMK SY   +   L  + 
Sbjct: 1457 GLCHVSEVSDDPVESLEFRYHAGDTVKAKVLKVDEKRHRIALGMKRSYI-GERSELCTNM 1515

Query: 1544 EEESDEAIEE---VGSYNRSSLLENSSVAVQDM-----DMESEDGGSLVLAQIESRASVP 1595
            EEE ++A +    +G    S   ++SS   +DM     ++E E    L LA  ESRA VP
Sbjct: 1516 EEEHEDAADGDNFIGETRLSMDPDSSSTKFKDMDDDFDNIEPEQ--PLRLA--ESRALVP 1571

Query: 1596 PLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1654
             LEV LDD ++ DM    S+N+  T    +  EKN+R  KKK KEERE E+RAAEERLL+
Sbjct: 1572 SLEVTLDDIDETDMVTLQSENKELTSGTDS-KEKNDRREKKKAKEEREMEVRAAEERLLQ 1630

Query: 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1714
             ++P T DEFE+LVRSSPNSSFVWIKYM F    ADVEKARSIAERAL+TINIREENEKL
Sbjct: 1631 NNSPTTVDEFEKLVRSSPNSSFVWIKYMDFF--KADVEKARSIAERALRTINIREENEKL 1688

Query: 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1774
            N+W+AYFNLENEYGNP E+AV K+FQRALQ  DPKKVHLALLG+YERT Q+ LADELL K
Sbjct: 1689 NVWLAYFNLENEYGNPKEDAVTKIFQRALQCNDPKKVHLALLGMYERTNQDNLADELLDK 1748

Query: 1775 MIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
            MIK+FKHSCKVWLRR++ L K++Q  +Q++V RALL LP+ KHIK+ISQTAILEFK GVA
Sbjct: 1749 MIKRFKHSCKVWLRRMESLFKKKQVEIQSIVNRALLCLPKRKHIKYISQTAILEFKCGVA 1808

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
            DRGRSMFEGIL EYPKRTDLWSIYLDQEIRLGD D+IR LFERAISLSL PKKMKFLFKK
Sbjct: 1809 DRGRSMFEGILREYPKRTDLWSIYLDQEIRLGDKDMIRALFERAISLSLAPKKMKFLFKK 1868

Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            YLEYEKSVG+EERIE VKQKA+EYVE+TLA
Sbjct: 1869 YLEYEKSVGDEERIESVKQKALEYVENTLA 1898


>gi|240255326|ref|NP_187803.4| RNA binding protein [Arabidopsis thaliana]
 gi|332641610|gb|AEE75131.1| RNA binding protein [Arabidopsis thaliana]
          Length = 1896

 Score = 2304 bits (5970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1196/1905 (62%), Positives = 1484/1905 (77%), Gaps = 66/1905 (3%)

Query: 39   EAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTER 98
            EA  L L   +DVP FPRGGG SL+++ER++++ EVDAEF+A ER      K K  K+++
Sbjct: 39   EAMALQL---EDVPDFPRGGGTSLSKKEREKLYEEVDAEFDADER---VSKKSKGGKSKK 92

Query: 99   KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
            +    +DDLG LFG G+ GK PRYANKIT KNIS GMKL GVV EVN+KD+VI LPGGLR
Sbjct: 93   RIPSDLDDLGLLFGGGLHGKRPRYANKITTKNISPGMKLLGVVTEVNQKDIVISLPGGLR 152

Query: 159  GLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
            GL RA++  D   D  IE +E+ LL  IF VGQLV CIVL+LDDDKKE GKRKIWLSLRL
Sbjct: 153  GLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVPCIVLELDDDKKEAGKRKIWLSLRL 211

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-RNNLAENSGIDVKPG 277
            SLL+KG S ++ Q GMV +A VKSIEDHG ILHFGLPS TGF+   ++  + SG+  K G
Sbjct: 212  SLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGLPSITGFIEISDDGNQESGM--KTG 269

Query: 278  LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
             L+QGVV  IDR RK+V+LSSDPD+V+KC+TKDL G+S DLL+PGMMV+ RVQS+LENG+
Sbjct: 270  QLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSGMSFDLLIPGMMVNARVQSVLENGI 329

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH 397
            +  FLTYF GTVD+FHL+N     +WK++YNQ+K VNARILF+DP+SRAVGLTL+P+++ 
Sbjct: 330  LFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTVNARILFIDPSSRAVGLTLSPHVVC 389

Query: 398  NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
            N+APP HV  GDI+D++KVVR+D+  GLLL++PS P  TPAYV+               +
Sbjct: 390  NKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKPTPTPAYVS---------------F 433

Query: 458  KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
            KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHSDVKPGMV K KVI+VD+FGAIVQ
Sbjct: 434  KEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIVQ 493

Query: 518  FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAIL 577
            F GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL IL
Sbjct: 494  FSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPIL 553

Query: 578  SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
            SSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VVK
Sbjct: 554  SSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVK 613

Query: 638  CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
            CR+ S++  ++RI L           +D +KLGS+VSG++D +T  AV+V V +K   KG
Sbjct: 614  CRVTSAVHGTQRITL-----------NDSIKLGSIVSGIIDTITSQAVIVRVKSKSVVKG 662

Query: 698  TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
            TI  EHLADH E A ++ S+++PGYE D+LLVLD E +N+ LS+KYSLI  A++LPSD +
Sbjct: 663  TISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSLIKLAEELPSDFN 722

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSKA+D  +AD+S++++VGQSVR+NI+
Sbjct: 723  QLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANIV 782

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
            DVN E  RITLSLKQS C+S DASF+QE+FL++EKI+ LQSS    S+  WVE F IGS+
Sbjct: 783  DVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGSL 842

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            I+G + E ND GVVV+F+  ++V GFI  H + GAT+  GSV+ A +LD+++AERLVDLS
Sbjct: 843  IKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVNAVVLDISRAERLVDLS 902

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
            L+   ++   +  SN  + KKKRKR  SK+L VHQ V+A+VEIVKE +LVLS+PE+ ++I
Sbjct: 903  LRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQRVSAVVEIVKEQHLVLSIPEHGYTI 960

Query: 998  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAK 1056
            GYASVSDYNTQK P KQF  GQSV+A+V A+ +  T+GRLLLLL ++S T ETS SKRAK
Sbjct: 961  GYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLTSGRLLLLLDSVSGTSETSRSKRAK 1020

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 1116
            KKSS +VGS+V AEITEIKP ELR+ FG  F GRIHITEV  + ++  +  F+ F++GQ+
Sbjct: 1021 KKSSCEVGSVVHAEITEIKPFELRVNFGNSFRGRIHITEVLVNDASTSDEPFAKFRVGQS 1080

Query: 1117 VTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
            ++AR++AK    D+KK+ LWELS+KP+ML   SE       E+ + + GQ V GYVYKVD
Sbjct: 1081 ISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFNDTQESEQLEFAAGQCVIGYVYKVD 1140

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             EW  L +SR++ A++FILD++ +  EL+EF+RRF IGKAV+G+VL+ NKEKK LRLV R
Sbjct: 1141 KEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFPIGKAVSGYVLTYNKEKKTLRLVQR 1200

Query: 1236 PF-------QDGISDKT----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
            P         +G   KT      I  D+   FIHEGDI+GGRISKIL GVGGL VQ+GP+
Sbjct: 1201 PLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEGDILGGRISKILPGVGGLRVQLGPY 1260

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1344
            ++GRVHFTE+ +  V DPL G+ EGQFVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +
Sbjct: 1261 VFGRVHFTEINDSWVPDPLDGFREGQFVKCKVLEISSSSKGTWQIELSLRTSLDGMSSAD 1320

Query: 1345 --SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
              S DL  + D   K  E+IEDLSP+M VQGYVKN  SKGCFI+LSR ++AKV LSNL D
Sbjct: 1321 HLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCD 1379

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1462
             +V+ PEKEFP+GKLV GRVL+VEPLSKR+EVTLKT ++    +SE  +L  LHVGD++ 
Sbjct: 1380 TFVKEPEKEFPVGKLVTGRVLNVEPLSKRIEVTLKTVNAGGRPKSESYDLKKLHVGDMIS 1439

Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            G+I+RVE +GLFI I+ T +VGLCH+S+LS+D ++N++  Y+AGE V+ KILK+D+EK+R
Sbjct: 1440 GRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKR 1499

Query: 1523 ISLGMKSSYFKN-DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1581
            ISLGMKSSY  N D D  Q  SE+ +    + +       L      AV D   +   GG
Sbjct: 1500 ISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPINDPKSEVL-----AAVDDFGFQETSGG 1554

Query: 1582 -SLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKE 1639
             SLVLAQ+ESRAS+PPLEV+LDD E+ D D+  SQNQ     A   DEK+ R  K+K+KE
Sbjct: 1555 TSLVLAQVESRASIPPLEVDLDDIEETDFDS--SQNQEKLLGANK-DEKSKRREKQKDKE 1611

Query: 1640 EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1699
            ERE++I+AAE RLLE  AP   DEFE+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAE
Sbjct: 1612 EREKKIQAAEGRLLEHHAPENADEFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAE 1671

Query: 1700 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1759
            RAL+TINIREE EKLNIWVAYFNLENE+GNPPEE+V KVF+RA QYCDPKKV+LALLG+Y
Sbjct: 1672 RALRTINIREEEEKLNIWVAYFNLENEHGNPPEESVKKVFERARQYCDPKKVYLALLGVY 1731

Query: 1760 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIK 1819
            ERTEQ KLAD+LL +MIKKFK SCK+WLR++Q  LKQ +E +Q+VV RALL LPRHKHIK
Sbjct: 1732 ERTEQYKLADKLLDEMIKKFKQSCKIWLRKIQSSLKQNEEAIQSVVNRALLCLPRHKHIK 1791

Query: 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879
            FISQTAILEFK GVADRGRS+FEG+L EYPKRTDLWS+YLDQEIRLG+ D+IR LFERAI
Sbjct: 1792 FISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEDDVIRSLFERAI 1851

Query: 1880 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            SLSLPPKKMKFLFKK+LEYEKSVG+EER+EYVKQ+AMEY  STLA
Sbjct: 1852 SLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRAMEYANSTLA 1896


>gi|10998136|dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis thaliana]
          Length = 1765

 Score = 2241 bits (5806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1144/1809 (63%), Positives = 1416/1809 (78%), Gaps = 63/1809 (3%)

Query: 135  MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 194
            MKL GVV EVN+KD+VI LPGGLRGL RA++  D   D  IE +E+ LL  IF VGQLV 
Sbjct: 1    MKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVP 59

Query: 195  CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 254
            CIVL+LDDDKKE GKRKIWLSLRLSLL+KG S ++ Q GMV +A VKSIEDHG ILHFGL
Sbjct: 60   CIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGL 119

Query: 255  PSFTGFLP-RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG 313
            PS TGF+   ++  + SG+  K G L+QGVV  IDR RK+V+LSSDPD+V+KC+TKDL G
Sbjct: 120  PSITGFIEISDDGNQESGM--KTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSG 177

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
            +S DLL+PGMMV+ RVQS+LENG++  FLTYF GTVD+FHL+N     +WK++YNQ+K V
Sbjct: 178  MSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTV 237

Query: 374  NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
            NARILF+DP+SRAVGLTL+P+++ N+APP HV  GDI+D++KVVR+D+  GLLL++PS P
Sbjct: 238  NARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKP 296

Query: 434  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
              TPAY    D A +EV KLEKK+KEG+ +RVR+LG + +EGLA G LK SAFEG VFTH
Sbjct: 297  TPTPAYTY--DAAGDEVTKLEKKFKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTH 354

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            SDVKPGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRV
Sbjct: 355  SDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRV 414

Query: 554  LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
            LG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF 
Sbjct: 415  LGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFV 474

Query: 614  PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLV 673
            PR ELGL+PG +P S++HVG+VVKCR+ S++  ++RI LSFM+KP+ VSEDD +KLGS+V
Sbjct: 475  PRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSEDDSIKLGSIV 534

Query: 674  SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 733
            SG++D +T  AV+V V +K   KGTI  EHLADH E A ++ S+++PGYE D+LLVLD E
Sbjct: 535  SGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIE 594

Query: 734  SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
             +N+ LS+KYSLI  A++LPSD + + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSK
Sbjct: 595  GNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSK 654

Query: 794  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 853
            A+D  +AD+S++++VGQSVR+NI+DVN E  RITLSLKQS C+S DASF+QE+FL++EKI
Sbjct: 655  AIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKI 714

Query: 854  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 913
            + LQSS    S+  WVE F IGS+I+G + E ND GVVV+F+  ++V GFI  H + GAT
Sbjct: 715  SDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGAT 774

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            +  GSV+ A +LD+++AERLVDLSL+   ++   +  SN  + KKKRKR  SK+L VHQ 
Sbjct: 775  LVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQR 832

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
            V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF  GQSV+A+V A+ +  T
Sbjct: 833  VSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLT 892

Query: 1034 AGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 1092
            +GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AE                      
Sbjct: 893  SGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAE---------------------- 930

Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIG 1151
               VND  ++  +  F+ F++GQ+++AR++AK    D+KK+ LWELS+KP+ML   SE  
Sbjct: 931  ---VND--ASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFN 985

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
                 E+ + + GQ V GYVYKVD EW  L +SR++ A++FILD++ +  EL+EF+RRF 
Sbjct: 986  DTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFP 1045

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQTFIHEG 1260
            IGKAV+G+VL+ NKEKK LRLV RP         +G   KT      I  D+   FIHEG
Sbjct: 1046 IGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEG 1105

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
            DI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ +  V DPL G+ EGQFVKCKVLEIS
Sbjct: 1106 DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKVLEIS 1165

Query: 1321 RTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1378
             + +GT+ +ELSLR+SLDGMSS +  S DL  + D   K  E+IEDLSP+M VQGYVKN 
Sbjct: 1166 SSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNT 1224

Query: 1379 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
             SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEPLSKR+EVTLKT
Sbjct: 1225 MSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSKRIEVTLKT 1284

Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
             ++    +SE  +L  LHVGD++ G+I+RVE +GLFI I+ T +VGLCH+S+LS+D ++N
Sbjct: 1285 VNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMEN 1344

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEESDEAIEEVGSY 1557
            ++  Y+AGE V+ KILK+D+EK+RISLGMKSSY  N D D  Q  SE+ +    + +   
Sbjct: 1345 VQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPINDP 1404

Query: 1558 NRSSLLENSSVAVQDMDMESEDGG-SLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQN 1615
                L      AV D   +   GG SLVLAQ+ESRAS+PPLEV+LDD E+ D D+  SQN
Sbjct: 1405 KSEVL-----AAVDDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIEETDFDS--SQN 1457

Query: 1616 QGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSS 1675
            Q     A   DEK+ R  K+K+KEERE++I+AAE RLLE  AP   DEFE+LVRSSPNSS
Sbjct: 1458 QEKLLGANK-DEKSKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEFEKLVRSSPNSS 1516

Query: 1676 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735
            FVWIKYMAFMLS+AD+EKARSIAERAL+TINIREE EKLNIWVAYFNLENE+GNPPEE+V
Sbjct: 1517 FVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNLENEHGNPPEESV 1576

Query: 1736 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1795
             KVF+RA QYCDPKKV+LALLG+YERTEQ KLAD+LL +MIKKFK SCK+WLR++Q  LK
Sbjct: 1577 KKVFERARQYCDPKKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCKIWLRKIQSSLK 1636

Query: 1796 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1855
            Q +E +Q+VV RALL LPRHKHIKFISQTAILEFK GVADRGRS+FEG+L EYPKRTDLW
Sbjct: 1637 QNEEAIQSVVNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLW 1696

Query: 1856 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915
            S+YLDQEIRLG+ D+IR LFERAISLSLPPKKMKFLFKK+LEYEKSVG+EER+EYVKQ+A
Sbjct: 1697 SVYLDQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRA 1756

Query: 1916 MEYVESTLA 1924
            MEY  STLA
Sbjct: 1757 MEYANSTLA 1765


>gi|297833988|ref|XP_002884876.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330716|gb|EFH61135.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1843

 Score = 2137 bits (5536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1090/1714 (63%), Positives = 1347/1714 (78%), Gaps = 63/1714 (3%)

Query: 235  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 294
            V +A VKS+EDHGYILHFGLPS +GF+  +N      + +K G L+QGVV  IDR RKVV
Sbjct: 169  VFSANVKSVEDHGYILHFGLPSISGFIEISNDGNQESV-MKTGQLIQGVVTKIDRDRKVV 227

Query: 295  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
            +LSSDPD+V+KC+TKDL G+S DLL+PGMMV+ RVQS+LENG++  FLTYF GTVD+FHL
Sbjct: 228  HLSSDPDSVAKCLTKDLNGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHL 287

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
            +N     +WK++YNQ+K VNARILF+DP+SRAVGLTLNP+L+ N+APP HV  GDI+D++
Sbjct: 288  KNPLSNKSWKDEYNQNKMVNARILFIDPSSRAVGLTLNPHLVCNKAPPLHVFSGDIFDEA 347

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            KVVR+D+  GLLL++PS PV  PAY++               +KEG+ +RVRILG + +E
Sbjct: 348  KVVRIDKS-GLLLELPSKPVPNPAYIS---------------FKEGNHIRVRILGLKQME 391

Query: 475  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
            GLA G LK SAFEG VFTHSDV+PGMV K KVI+VD+FGAIVQF GG+KA+CPL HMSEF
Sbjct: 392  GLAIGTLKESAFEGPVFTHSDVRPGMVTKAKVISVDTFGAIVQFAGGLKAMCPLRHMSEF 451

Query: 535  EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
            E++KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL ILSSY +AT+ L+THGWIT
Sbjct: 452  EVMKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWIT 511

Query: 595  KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            KIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VVKCR+ S++  SRRI L  
Sbjct: 512  KIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGSRRITL-- 569

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
                     +D +KLGS+VSG+VD +T  AV+V V +KG  KGTI TEHLADH + A +M
Sbjct: 570  ---------NDSIKLGSIVSGIVDSITSQAVIVRVKSKGVLKGTISTEHLADHHDQAKLM 620

Query: 715  KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
             S+++PGYE D+LLVLD E +NL LS+KYSLI  A++LPSD + + PNSVVHGYVCN+IE
Sbjct: 621  MSLLRPGYELDKLLVLDIEGNNLSLSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIE 680

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             GCFVRFLGRLTGFAPRSKA+D  RADLS++++VGQSVR+NI+DVN E  RITLSLKQS 
Sbjct: 681  NGCFVRFLGRLTGFAPRSKAIDDPRADLSESFFVGQSVRANIVDVNQEKSRITLSLKQSS 740

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
            C+S DASF+QE+FL++EKI+ LQSS    SE  WVE F IGS+I+G + E ND GVVV+F
Sbjct: 741  CASVDASFVQEYFLMDEKISDLQSSDITKSEYSWVEKFSIGSLIKGTLQEQNDLGVVVNF 800

Query: 895  EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
            +  ++V GFI  H + GAT+  GSV+ A +LD+++AERLVDLSL+   I+   +  SN Q
Sbjct: 801  DNINNVLGFIPQHHMGGATMVPGSVVNAVVLDISRAERLVDLSLRPELINNLTKEVSNSQ 860

Query: 955  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 1014
              KKKRKR  SK+L VHQ V+A+VEIVKE +LVLS+PE+ +++GYAS+SDYNTQK P KQ
Sbjct: 861  L-KKKRKRGISKELEVHQRVSAVVEIVKEQHLVLSIPEHGYTVGYASLSDYNTQKLPVKQ 919

Query: 1015 FLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITE 1073
            F  GQSV+A+V A+ +  T+GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AEITE
Sbjct: 920  FSTGQSVVASVEAVQNPLTSGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAEITE 979

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            IKP ELR+ FG  F GRIHITEVND  ++  +  F+ F++GQ+++AR+++K    D+KKS
Sbjct: 980  IKPFELRVNFGNSFRGRIHITEVND--ASTSDEPFAKFRVGQSMSARVVSKPCHTDIKKS 1037

Query: 1134 FLWELSIKPSML-TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
             LWELS+KP+ML   SE+      E+ +   GQ V GYVYKVD EW  L ISR++ A++F
Sbjct: 1038 QLWELSVKPAMLRDSSELNDIQESEQLEFVAGQCVNGYVYKVDKEWVWLAISRNVTARIF 1097

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD-------GISDKT 1245
            ILD+A E  EL+EF+R F IGKAV+G+VL+ NKEK+ LRLV RP  D       G   KT
Sbjct: 1098 ILDTACEAHELEEFERHFPIGKAVSGYVLTYNKEKRTLRLVQRPLLDIHKSIANGGGSKT 1157

Query: 1246 ----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                + I  D+   FIHEGDI+GGRISKIL GVGGL VQIGP+++GRVHFTE+ ++ V +
Sbjct: 1158 DKLDISIPGDDGTLFIHEGDILGGRISKILPGVGGLRVQIGPYVFGRVHFTEINDLWVPN 1217

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHL 1359
            PL G+ EGQFVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +  S DL+ + D   K  
Sbjct: 1218 PLDGFREGQFVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHISEDLNNN-DNVCKRF 1276

Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
            E+ EDLS +M VQGYVKN  SKGCFI+LSRK++AKV LSNL D +V+ PEKEFP+GKLV 
Sbjct: 1277 ERFEDLSLDMGVQGYVKNTMSKGCFIILSRKVEAKVKLSNLCDTFVKEPEKEFPVGKLVT 1336

Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
            GRVL+VEPLSKR+EVTLKT ++    +SE  ++  LHVGD++ G+IKRVE YGLFI I+ 
Sbjct: 1337 GRVLNVEPLSKRIEVTLKTVNAGGQPKSESYDMKKLHVGDMISGRIKRVEPYGLFIDIDQ 1396

Query: 1480 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD-N 1538
              +VGLCH+++LS+D ++N++  Y+AGE V  KILK+D+EKRRISLGMKSSY  N  D  
Sbjct: 1397 IGMVGLCHITQLSDDRIENVQARYKAGESVSAKILKLDEEKRRISLGMKSSYLMNGDDVK 1456

Query: 1539 LQMSSEEESDEAIEEVGSYNRSSLLENSSV--AVQDMDMESEDGG-----SLVLAQIESR 1591
             Q  SEE++DE   E    N      N+ V  AV D   +   GG     SLVLAQ++SR
Sbjct: 1457 AQPPSEEKADETSMECDPINDP----NTEVLAAVGDFGFQETSGGRHSGASLVLAQVDSR 1512

Query: 1592 ASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEE 1650
            AS+PPLEV+LDD E+ D DN  +QNQ     A   DEK+ R  K+K+KEERE++I+AAE 
Sbjct: 1513 ASIPPLEVDLDDIEEMDFDN--NQNQEKLLGADK-DEKSKRREKQKDKEEREKKIQAAEG 1569

Query: 1651 RLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE 1710
            RLLE  AP + DEFE+LVRSSPNSSFVWIKYMAFMLS+AD+EKARSIAERAL+TINIREE
Sbjct: 1570 RLLEHHAPESADEFEKLVRSSPNSSFVWIKYMAFMLSLADIEKARSIAERALRTINIREE 1629

Query: 1711 NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADE 1770
             EKLNIWVAYFNLENE+G+PPEEAV KVF+RA QYCDPKKV+LALLG+YERTEQ KL D+
Sbjct: 1630 EEKLNIWVAYFNLENEHGSPPEEAVKKVFERARQYCDPKKVYLALLGVYERTEQYKLVDK 1689

Query: 1771 LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830
            LL +M+KKFK SCK+WLR++Q  L+Q +EG+Q+VV RALL LPRHKHIKFISQTAILEFK
Sbjct: 1690 LLDEMVKKFKQSCKIWLRKIQSSLQQNEEGIQSVVNRALLCLPRHKHIKFISQTAILEFK 1749

Query: 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1890
             GVADRGRS+FEG+L EYPKRTDLWS+YLDQEIRLG+VD+IR LFERAISLSLPPKKMKF
Sbjct: 1750 CGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIRLGEVDVIRSLFERAISLSLPPKKMKF 1809

Query: 1891 LFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            LFKK+LEYE+SVGEEER EYVKQ+A+EY +STLA
Sbjct: 1810 LFKKFLEYERSVGEEERAEYVKQRALEYAKSTLA 1843



 Score =  150 bits (380), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 166/571 (29%), Positives = 260/571 (45%), Gaps = 84/571 (14%)

Query: 39  EAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTER 98
           EA  L L   DDV  FPRGGG SL+++ER++I+ EVDAEF+A ER      K K  K+++
Sbjct: 39  EAMALQL---DDVLDFPRGGGTSLSKKEREKIYEEVDAEFDADER---VSKKSKGGKSKK 92

Query: 99  KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
           +    VDDLG LFG     K PRYANKIT KNIS GMKL GVV EVN+KD+VI LPGGLR
Sbjct: 93  RIPSDVDDLGLLFGGLNG-KRPRYANKITTKNISPGMKLLGVVIEVNQKDIVISLPGGLR 151

Query: 159 GLARAADALD---------------------------PILDNEIEANEDNLLPTIFHVGQ 191
           GL RA++A D                           P +   IE + D    ++   GQ
Sbjct: 152 GLVRASEASDFTDLGIEVFSANVKSVEDHGYILHFGLPSISGFIEISNDGNQESVMKTGQ 211

Query: 192 LVSCIVLQLDDDKK--EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
           L+  +V ++D D+K   +      ++  L+    G+S + +  GM++ A V+S+ ++G +
Sbjct: 212 LIQGVVTKIDRDRKVVHLSSDPDSVAKCLTKDLNGMSFDLLIPGMMVNARVQSVLENGIL 271

Query: 250 LHFGLPSFTG----FLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 304
             F L  F G    F  +N L+  S  D      ++   +  ID + + V L+ +P  V 
Sbjct: 272 FDF-LTYFNGTVDLFHLKNPLSNKSWKDEYNQNKMVNARILFIDPSSRAVGLTLNPHLVC 330

Query: 305 KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 364
                  K   + +    +    +V  I ++G++L   +               P   + 
Sbjct: 331 N------KAPPLHVFSGDIFDEAKVVRIDKSGLLLELPS------------KPVPNPAYI 372

Query: 365 NDYNQHKKVNARILFVDPTSRAVGLTL------NPYLLHNRAPPSHVKVGDIYDQSKVVR 418
           + + +   +  RIL +         TL       P   H+   P  V       ++KV+ 
Sbjct: 373 S-FKEGNHIRVRILGLKQMEGLAIGTLKESAFEGPVFTHSDVRPGMVT------KAKVIS 425

Query: 419 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 478
           VD   G ++          A   +  ++E EV K  KK+K G+ +  R+LG +      T
Sbjct: 426 VDT-FGAIVQFAG---GLKAMCPLRHMSEFEVMKPRKKFKVGAELVFRVLGCKSKRITVT 481

Query: 479 ---GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
               ++K+     ++ +++D   G+V  G +  ++  G  V+F  GV+   P   +    
Sbjct: 482 YKKTLVKSKL--PILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEP 539

Query: 536 IVKPGKKFKVGAELVFRVLGV--KSKRITVT 564
              P   F VG  +  RV      S+RIT+ 
Sbjct: 540 GSDPDSVFHVGEVVKCRVTSAVHGSRRITLN 570


>gi|222636634|gb|EEE66766.1| hypothetical protein OsJ_23484 [Oryza sativa Japonica Group]
          Length = 1898

 Score = 2009 bits (5206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1039/1830 (56%), Positives = 1359/1830 (74%), Gaps = 52/1830 (2%)

Query: 105  DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
            DDLGSLFG   +GKLPR+AN++TLKNIS  MKLWGVV EVN+KD+V+ LPGG+RG  R+ 
Sbjct: 111  DDLGSLFGGATTGKLPRFANRVTLKNISPNMKLWGVVIEVNQKDIVVSLPGGMRGFVRSE 170

Query: 165  DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLY 222
            +  D       + +E ++   + HVGQLV CIVL++DDD KE GK  +++WLSLRLS +Y
Sbjct: 171  EVHDITSQETRKDSEGSICADVVHVGQLVPCIVLRVDDDNKE-GKVNKRVWLSLRLSRIY 229

Query: 223  KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG 282
            KGLSL+ +Q+GMVLTA VKSIEDHGYILHFG+ SF+GF+P+   A+     ++ G L+Q 
Sbjct: 230  KGLSLDAIQDGMVLTAQVKSIEDHGYILHFGVSSFSGFMPK---ADRESAKIESGQLIQC 286

Query: 283  VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            VV++ID+ R++V+LSSD D +SK + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFL
Sbjct: 287  VVKAIDKAREIVHLSSDEDLLSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFL 346

Query: 343  TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
            TYFTGT DIF+L N+FP+ +WK+DY ++KKVNARILFVDP++RAVGLTLN  LL  + P 
Sbjct: 347  TYFTGTADIFNLSNSFPSGSWKDDYIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPS 406

Query: 403  SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
             +VK G+IYD+++V+R+D+  GL L+IPS P  +P +V+I DV++++V+ +EKK+KEGS 
Sbjct: 407  INVKAGEIYDKARVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSM 465

Query: 463  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
             RVR+LG RHLEG+A G LK SAFEG VFTH+DVKPGMVV+ KV+ V+ FGAIVQF  GV
Sbjct: 466  ARVRVLGVRHLEGVAIGTLKESAFEGSVFTHADVKPGMVVRAKVVTVEPFGAIVQFSSGV 525

Query: 523  KALCPLPHMSEFE-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA 581
            KALCPLPHMSE E +VKP KKFKVG EL FRVLG KSKRITVT KK+LVKSKL +L+SYA
Sbjct: 526  KALCPLPHMSELEHVVKPPKKFKVGVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYA 585

Query: 582  EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
            +A   L+THGWITKIEKHGCFV+FYNGVQGF  RSELGL+PG E  ++YHVGQVVKCR++
Sbjct: 586  DAKIGLLTHGWITKIEKHGCFVKFYNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVV 645

Query: 642  SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
            S +PASR+IN++F++   RV + D  K+GS+VSGVV+ +TP AVVV V   G+ KG+I  
Sbjct: 646  SVVPASRKINVTFLISTNRVIQADTPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILN 703

Query: 702  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            EHLADH   A  +K+++KPG+EF +LLVLD E  NL+LSAK SLIN A  +PS+ S +H 
Sbjct: 704  EHLADHRGQAAQLKNLLKPGHEFSELLVLDVEGQNLVLSAKQSLINCASDIPSEISQMHA 763

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             SV HGYVCNIIE GCFVRFLG LTGF+P+ KAVD     LS  +YVGQSVRS+IL+VN+
Sbjct: 764  GSVFHGYVCNIIEAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNA 823

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
            E+ R+ LSL+QS CSS D SF+Q +FLL++KI  L+ S  + S   W+  F IG+++EG+
Sbjct: 824  ESARVKLSLQQSMCSSADCSFVQGYFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGE 883

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            V    ++GV+++F+ H DV G I HHQL  ++VE GS ++  ++D++    +V++SLK+ 
Sbjct: 884  VGAIEEYGVILNFQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSE 941

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
             +      + ++  +KKKR R A  DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A 
Sbjct: 942  LV-----RSVSKVGKKKKRHRAAVMDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAP 996

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS-S 1060
            + DYN+Q  P   + NGQ +   V ++PSS   GRLLLL KA  +  + SS +  KK   
Sbjct: 997  LMDYNSQLLPCCNYENGQRITVVVGSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSD 1056

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
            + VGSLV+AEI +IKPLEL LKFG   HGRIHITEV DD SN  +  FS  +IG++V AR
Sbjct: 1057 FKVGSLVEAEIIDIKPLELLLKFGSNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQAR 1114

Query: 1121 IIAKSNKPDMK-KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
            I+A++       K+  WELSI+PS+L            E   SIG  V  YV KVD EW 
Sbjct: 1115 IVAEAEHSGKGGKNSKWELSIRPSLLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWI 1174

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RP 1236
             LT+SR + A LFILDS+ EP EL++FQ+R+ +G+AV G ++ +N+EK+LLRL     + 
Sbjct: 1175 WLTVSRDVMAHLFILDSSAEPGELEKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQS 1234

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
              + I +    +S     T   +GDI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +
Sbjct: 1235 LPENIGETQKPLSATVEHT--KQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVD 1292

Query: 1297 ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1356
              V +P+SG+ EGQFVKCKVL++SR+  G+  V+LSLRSS+   +S  S  L  D     
Sbjct: 1293 SWVQEPISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQSRRLFDDSRIRT 1351

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
               EKI DL P   V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YVE+P+ +FP+G 
Sbjct: 1352 SRFEKINDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQNDFPVGL 1411

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
            LV GRVLS EP S +VEV+L+ +    + +S+  + S+LHVGDI+ GQ+KRVES+GLF+T
Sbjct: 1412 LVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVT 1471

Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
            I+ + LV LCHVSELS++ V +I + ++AG+K+       D+E+ R+S+GMK SY   D+
Sbjct: 1472 IQGSELVALCHVSELSDEPVLDIHSCHKAGDKI-------DEERHRVSIGMKKSYIGPDS 1524

Query: 1537 DNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPP 1596
                 +S++E DE + E  S N                M  +   +LVL + ESRASV P
Sbjct: 1525 TG--DTSDDEDDEIVPEEISRNPV--------------MGRDRNHALVLPKPESRASVLP 1568

Query: 1597 LEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1656
            L+V+LD+ +       ++ Q   +  +  D+K+N+  K+K +++RE EI A EER L++D
Sbjct: 1569 LQVSLDESEGSDQENDNKGQEIANGTEVDDKKSNKRLKEKARKQRELEISALEERALQRD 1628

Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1716
             P+TPDEFE+LVRSSPNSSFVWI YMAF+L +ADV+KAR++AERAL+TINIREE EKLN+
Sbjct: 1629 IPQTPDEFEKLVRSSPNSSFVWINYMAFLLDLADVDKARAVAERALRTINIREEEEKLNV 1688

Query: 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
            WVAYFNLENEYG+P E+AV K+FQRALQYCDPKKVHLALL +YERTEQ  LADELL +M 
Sbjct: 1689 WVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLAMYERTEQYTLADELLDRMT 1748

Query: 1777 KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
            K+FK SCK+WLR +Q  LKQ +  E ++ +V+RALLSLP+ K  KF+SQTAILEFK GV 
Sbjct: 1749 KRFKTSCKIWLRCIQLSLKQSKDVECIKLIVKRALLSLPQSKRRKFLSQTAILEFKCGVP 1808

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
            + GRS FE IL EYPKRTDLWS+YLDQEIRLGD ++IR LFER   LSLPPKKMKFLFKK
Sbjct: 1809 EEGRSRFELILREYPKRTDLWSVYLDQEIRLGDTEIIRALFERVTCLSLPPKKMKFLFKK 1868

Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            YLEYEKS G+EERIE+VKQKA+EYV+S+LA
Sbjct: 1869 YLEYEKSQGDEERIEHVKQKALEYVQSSLA 1898


>gi|242043296|ref|XP_002459519.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
 gi|241922896|gb|EER96040.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
          Length = 1862

 Score = 1989 bits (5152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1034/1832 (56%), Positives = 1352/1832 (73%), Gaps = 104/1832 (5%)

Query: 105  DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
            DDLG+LFG   +GKLPRYAN+IT+KNIS  MKLWGVV EVN+KD+V+ LPGG+RG  R+ 
Sbjct: 116  DDLGTLFGGATTGKLPRYANRITVKNISPNMKLWGVVIEVNQKDIVLSLPGGIRGFVRSE 175

Query: 165  DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG 224
            D  D  L    + +E++L   + HVGQLV CIVL++DDDKKE                  
Sbjct: 176  DVCDIALQENRKDSENSLCAKVVHVGQLVPCIVLRVDDDKKE------------------ 217

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVV 284
                    G VL A VKSIEDHGYILHFG+ SF+GF+ +++  EN  I+ +   L+  VV
Sbjct: 218  --------GKVLAAQVKSIEDHGYILHFGVSSFSGFMQKDD-KENVKIERRQ--LMHCVV 266

Query: 285  RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 344
            ++ID+TR +V+LSSD D + K + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFLTY
Sbjct: 267  KAIDKTRAIVHLSSDEDLLCKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFLTY 326

Query: 345  FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH 404
            F+GTVDIF+L N+FP+ NWK+DY+++KKVNARILFVDP++RAVGLTLN +LLH   PP +
Sbjct: 327  FSGTVDIFNLLNSFPSGNWKDDYSKNKKVNARILFVDPSTRAVGLTLNKHLLHLEVPPIN 386

Query: 405  VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 464
            +K GDIYD+SKV+RVD+  GL L+IPS P  +P +++I DV++++ + LEK +KEGS +R
Sbjct: 387  LKAGDIYDKSKVLRVDKKAGLFLEIPS-PTPSPGFISIHDVSDKDAKNLEK-FKEGSSLR 444

Query: 465  VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
            VRILG R+LEG+A G +K SAFEG VFTH DVKPGM+V+ KV  V+ FGAIVQF  GVKA
Sbjct: 445  VRILGVRNLEGVAIGTVKDSAFEGSVFTHDDVKPGMLVRAKVATVEPFGAIVQFSSGVKA 504

Query: 525  LCPLPHMSEFE-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 583
            LCPLPHMSE E +VKP KKFKVGAEL+FRVLG KSKR+TVT+KK+LVKSKL +L+SYA+A
Sbjct: 505  LCPLPHMSELEHVVKPPKKFKVGAELLFRVLGCKSKRVTVTYKKSLVKSKLDVLASYADA 564

Query: 584  TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               L+THGWITKIEKHGCFV+FYNGVQGF  RS+LGL+ G E  ++YHVGQVVKCRI++ 
Sbjct: 565  KIGLVTHGWITKIEKHGCFVKFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVVKCRIINV 624

Query: 644  IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            IPASR++N+SF++   RV   D  KLGS+VSGVV+ +TP AVVV V   G+SKGTI  EH
Sbjct: 625  IPASRKLNVSFVISHNRVIPIDTPKLGSIVSGVVERLTPAAVVVSV--NGFSKGTILNEH 682

Query: 704  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
            LADH  H                    D E  NL+LSAK+SLIN A  +PS+ S +HP  
Sbjct: 683  LADH--H--------------------DIEGHNLVLSAKHSLINCANDIPSEISQMHPGV 720

Query: 764  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            VVHGY+CNIIE+GCFVRFLG LTGF+P+ KAVD +   LS  +YVGQSVRS+IL V +ET
Sbjct: 721  VVHGYICNIIESGCFVRFLGHLTGFSPKDKAVDRRIERLSDAFYVGQSVRSHILSVTAET 780

Query: 824  GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
             R+ LSL+QS CSSTD+SF+Q +FLL++KIA L+ S ++     W   F IGS++EG+V 
Sbjct: 781  ARVKLSLQQSMCSSTDSSFIQGYFLLDQKIAALKYSSND-----WAHTFGIGSLVEGEVG 835

Query: 884  ESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFI 943
               ++G++++F++H DV G I HHQL G++VE GS ++  +LD++    +V+LSLK   I
Sbjct: 836  AIEEYGIILNFKDHLDVVGLIEHHQLGGSSVEVGSSVKGLVLDLSDG--VVNLSLKPELI 893

Query: 944  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS 1003
               R        +KKKR+R A  DL +H+ VNA+VEI+K +YLVLS+PEYN++IG+A + 
Sbjct: 894  GSVRNV-----GKKKKRQRAAVADLELHEEVNAVVEIIKGSYLVLSIPEYNYAIGFAPLM 948

Query: 1004 DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYD 1062
            DYN+Q  P   + NGQ +   V  +PSS ++GRL+LL KA ++ +  S SKRAKKKS Y 
Sbjct: 949  DYNSQLLPHHHYDNGQRITVVVGNIPSSDSSGRLILLPKASAQYSALSESKRAKKKSGYK 1008

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            +GSLV+AEI +IKPLEL L+FG   HGRIHITEV +  S+  E+ FS  +IGQ +TARI+
Sbjct: 1009 IGSLVEAEIIDIKPLELLLQFGGNLHGRIHITEVPEKDSD--EHPFSKLRIGQKLTARIV 1066

Query: 1123 AKSNKPDMK--KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
            A++ +P  K  K+F WELSI+P ++   E       +E   +  + V  YV KVD EW  
Sbjct: 1067 AEA-EPSGKSGKNFKWELSIRPCIVN-GEFDELTAQKEQKHTTNEIVRAYVVKVDKEWVW 1124

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
            LT+SR++ A LF+LDS+ EPSEL+EFQ+RF  G+AV G V+++N+EK+LLRL  +   + 
Sbjct: 1125 LTVSRNVMAHLFVLDSSSEPSELKEFQQRFSEGQAVKGRVINVNREKRLLRL--KALDNQ 1182

Query: 1241 ISDKTVD-ISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
             +   +D I       F    +GDI+GGR+ KIL GVGGLVVQIGPHL GRVH+TE+ + 
Sbjct: 1183 CTQLNIDEIQQSKSSVFEQTKQGDIIGGRVQKILPGVGGLVVQIGPHLRGRVHYTEIVDS 1242

Query: 1298 CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1357
             V++PLSG+ EGQFVKCKVL +SR+  G+  V+LSLRSS + +  +N+S L  D+ T   
Sbjct: 1243 WVTEPLSGFHEGQFVKCKVLSVSRSSEGSLRVDLSLRSS-NLIRDSNNSGLVDDLATCTS 1301

Query: 1358 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1417
             +EKI+DL P   ++GYVKNV SKGCFIM+SR ++A++ LSNLSD YVE+P+K+FP+G L
Sbjct: 1302 RIEKIKDLLPGTEIKGYVKNVNSKGCFIMISRMVEARITLSNLSDEYVENPQKDFPVGML 1361

Query: 1418 VAGRVLSVEPLSKRVEVTL-KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
            V GRVLS +P S RVE +L KT+ S+     +I+  S+LHVGDI+ GQ+KRVES+GLF+T
Sbjct: 1362 VHGRVLSTDPSSGRVEASLRKTTGSKLEKLDDIS-YSDLHVGDIIDGQVKRVESFGLFVT 1420

Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
            I  + LVGLCHVSELS++ V +I + Y+AG+ VK KILK+D+++ R+SLGMK SYF  D+
Sbjct: 1421 IRRSELVGLCHVSELSDEPVVDINSCYKAGDMVKAKILKIDEKRHRVSLGMKKSYF--DS 1478

Query: 1537 DNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPP 1596
            D    ++++E DE           S L + SVA Q ++  +    SLV  + E  ASVPP
Sbjct: 1479 DLTADTNDDEDDE-----------SALMDISVAPQMVEYHNR---SLVNRKAEPIASVPP 1524

Query: 1597 LEVNLDD-EQPDM-DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1654
            L+V+LD+ E  D+ DN  ++     +  +   +KN++  KK+ +++RE EI A EER L+
Sbjct: 1525 LQVSLDESECSDLEDNNNNKGPEIANGTEANAKKNDKQLKKEARKQRELEISAMEERALQ 1584

Query: 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1714
             D P+TPD+FE+LVRSSPNSSFVWIKYMA +L +ADVEKAR++AERAL+TI  REE EKL
Sbjct: 1585 GDVPQTPDDFEKLVRSSPNSSFVWIKYMATLLDLADVEKARAVAERALKTIIPREEEEKL 1644

Query: 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1774
            N+WVAYFNLENEYG+P E+AV KVFQRALQYCDPKK+HLALL +YERTEQ +LADELL +
Sbjct: 1645 NVWVAYFNLENEYGSPREDAVKKVFQRALQYCDPKKLHLALLAMYERTEQYELADELLDR 1704

Query: 1775 MIKKFKHSCKVWLRRVQRLLKQQQE--GVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832
            M K+FK SCK+WL R+Q  LKQ ++   ++++V RALLSLP  K IKF+SQTAILEFK G
Sbjct: 1705 MTKRFKTSCKIWLCRIQFALKQGKDVACIKSIVNRALLSLPHRKRIKFLSQTAILEFKCG 1764

Query: 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892
            V + GRS FE IL EYPKRTDLWS+YLDQEIRLGD+++IR LFER   L+LPPKKM+FLF
Sbjct: 1765 VPEEGRSRFELILREYPKRTDLWSVYLDQEIRLGDIEVIRALFERVTCLTLPPKKMQFLF 1824

Query: 1893 KKYLEYEKSVGEE-ERIEYVKQKAMEYVESTL 1923
            KKYL +EKS+GE+ ERI++V+QKA+EYV+S+L
Sbjct: 1825 KKYLNFEKSLGEDNERIQFVQQKAIEYVQSSL 1856


>gi|218199275|gb|EEC81702.1| hypothetical protein OsI_25303 [Oryza sativa Indica Group]
          Length = 1848

 Score = 1922 bits (4978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1009/1830 (55%), Positives = 1321/1830 (72%), Gaps = 102/1830 (5%)

Query: 105  DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
            DDLGSLFG   +GKLPR+AN++TLKNIS  MKLWGVV EVN+KD+V+ LPGG+RG  R+ 
Sbjct: 111  DDLGSLFGGATTGKLPRFANRVTLKNISPNMKLWGVVIEVNQKDIVVSLPGGMRGFVRSE 170

Query: 165  DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLY 222
            +  D       + +E ++   + HVGQLV CIVL++DDD KE GK  +++WLSLRLS +Y
Sbjct: 171  EVHDITSQETRKDSEGSICADVVHVGQLVPCIVLRVDDDNKE-GKVNKRVWLSLRLSRIY 229

Query: 223  KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG 282
            KGLSL+ +Q+GMVLTA VKSIEDHGYILHFG+ SF+GF+P+   A+     ++ G L+Q 
Sbjct: 230  KGLSLDAIQDGMVLTAQVKSIEDHGYILHFGVSSFSGFMPK---ADRESAKIESGQLIQC 286

Query: 283  VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            VV++ID+ R++V+LSSD D +SK + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFL
Sbjct: 287  VVKAIDKAREIVHLSSDEDLLSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFL 346

Query: 343  TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
            TYFTGT DIF+L N+FP+ +WK+DY ++KKVNARILFVDP++RAVGLTLN  LL  + P 
Sbjct: 347  TYFTGTADIFNLSNSFPSGSWKDDYIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPS 406

Query: 403  SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
             +VK G+IYD+++V+R+D+  GL L+IPS P  +P +V+I DV++++V+ +EKK+KEGS 
Sbjct: 407  INVKAGEIYDKARVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSM 465

Query: 463  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
             RVR+LG RHLEG+A G LK SAFEG VFTH+DVKPGMVV+ KV+ V+ FGAIVQF  GV
Sbjct: 466  ARVRVLGVRHLEGVAIGTLKESAFEGSVFTHADVKPGMVVRAKVVTVEPFGAIVQFSSGV 525

Query: 523  KALCPLPHMSEFE-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA 581
            KALCPLPHMSE E +VKP KKFKVG EL FRVLG KSKRITVT KK+LVKSKL +L+SYA
Sbjct: 526  KALCPLPHMSELEHVVKPPKKFKVGVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYA 585

Query: 582  EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
            +A   L+THGWITKIEKHGCFV+FYNGVQGF  RSELGL+PG E  ++YHVGQVVKCR++
Sbjct: 586  DAKIGLLTHGWITKIEKHGCFVKFYNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVV 645

Query: 642  SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
            S +PASR+IN++F++   RV + D  K+GS+VSGVV+ +TP AVVV V   G+ KG+I  
Sbjct: 646  SVVPASRKINVTFLISTNRVIQADTPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILN 703

Query: 702  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            EHLADH                       D E  NL+LSAK SLIN A  +PS+ S +H 
Sbjct: 704  EHLADHR----------------------DVEGQNLVLSAKQSLINCASDIPSEISQMHA 741

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             SV HGYVCNIIE GCFVRFLG LTGF+P+ KAVD     LS  +YVGQSVRS+IL+VN+
Sbjct: 742  GSVFHGYVCNIIEAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNA 801

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
            E+ R+ LSL+QS CSS D SF+Q +FLL++KI  L+ S  + S   W+  F IG+++EG+
Sbjct: 802  ESARVKLSLQQSMCSSADCSFVQGYFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGE 861

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            V    ++GV+++F+ H DV G I HHQL  ++VE GS ++  ++D++    +V++SLK+ 
Sbjct: 862  VGAIEEYGVILNFQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSE 919

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
             +      + ++  +KKKR R A  DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A 
Sbjct: 920  LV-----RSVSKVGKKKKRHRAAVMDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAP 974

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS-S 1060
            + DYN+Q  P   + NGQ +   V ++PSS   GRLLLL KA  +  + SS +  KK   
Sbjct: 975  LMDYNSQLLPCCNYENGQRITVVVGSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSD 1034

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
            + VGSLV+AEI +IKPLEL LKFG   HGRIHITEV DD SN  +  FS  +IG++V AR
Sbjct: 1035 FKVGSLVEAEIIDIKPLELLLKFGSNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQAR 1092

Query: 1121 IIAKSNKPDMK-KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
            I+A++       K+  WELSI+PS+L            E   SIG  V  YV KVD EW 
Sbjct: 1093 IVAEAEHSGKGGKNSKWELSIRPSLLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWI 1152

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RP 1236
             LT+SR + A LFILDS+ EP EL++FQ+R+ +G+AV G ++ +N+EK+LLRL     + 
Sbjct: 1153 WLTVSRDVMAHLFILDSSAEPGELEKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQS 1212

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
              + I +    +S     T   +GDI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +
Sbjct: 1213 LPENIGETQKPLSATVEHT--KQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVD 1270

Query: 1297 ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1356
              V +P+SG+ EGQFVKCKVL++SR+  G+  V+LSLRSS+   +S  S  L  D     
Sbjct: 1271 SWVQEPISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQSRRLFDDSRIRT 1329

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
               EKI DL P   V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YVE+P+ +FP+G 
Sbjct: 1330 SRFEKINDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQNDFPVGL 1389

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
            LV GRVLS EP S +VEV+L+ +    + +S+  + S+LHVGDI+ GQ+KRVES+GLF+T
Sbjct: 1390 LVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVT 1449

Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
            I+ + LV LCHVSELS++ V +I + ++AG+K+       D+E+ R+S+GMK SY   D+
Sbjct: 1450 IQGSELVALCHVSELSDEPVLDIHSCHKAGDKI-------DEERHRVSIGMKKSYIGPDS 1502

Query: 1537 DNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPP 1596
                 +S++E DE + E  S N                M  +   +LVL + ESRASV P
Sbjct: 1503 TG--DTSDDEDDEIVPEEISRNPV--------------MGRDRNHALVLPKPESRASVLP 1546

Query: 1597 LEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1656
            L+V+LD+ +       ++ Q   + A+  D+K+N+  K+K +++RE EI A EER L++D
Sbjct: 1547 LQVSLDESEGSDQENDNKGQEIANGAEVDDKKSNKRLKEKARKQRELEISALEERALQRD 1606

Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1716
             P+TPDEFE+LVRSSPNSSFVWI YMAF+L +ADV+KAR++AERAL+TINIREE EKLN+
Sbjct: 1607 IPQTPDEFEKLVRSSPNSSFVWINYMAFLLDLADVDKARAVAERALRTINIREEEEKLNV 1666

Query: 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
            WVAYFNLENEYG+P E+AV K+FQRALQYCDPKKVHLALL +YERTEQ  LADELL +M 
Sbjct: 1667 WVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLAMYERTEQYTLADELLDRMT 1726

Query: 1777 KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
            K+FK SCK+WLR +Q  LKQ +  E ++ +V+RALLSLP+ K IKF+SQTAILEFK GV 
Sbjct: 1727 KRFKTSCKIWLRCIQLSLKQSKDVECIKLIVKRALLSLPQSKRIKFLSQTAILEFKCGVP 1786

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
            + GRS FE IL EYPKRTDLWS+YLDQ                            FLFKK
Sbjct: 1787 EEGRSRFELILREYPKRTDLWSVYLDQ----------------------------FLFKK 1818

Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            YLEYEKS G+EERIE+VKQKA+EYV+S+LA
Sbjct: 1819 YLEYEKSQGDEERIEHVKQKALEYVQSSLA 1848


>gi|357124172|ref|XP_003563778.1| PREDICTED: protein RRP5 homolog [Brachypodium distachyon]
          Length = 1668

 Score = 1813 bits (4696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 941/1703 (55%), Positives = 1237/1703 (72%), Gaps = 90/1703 (5%)

Query: 235  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 294
            VLTA VKS+EDHGYIL+FG+ +F+GF+P+    +   + ++ G L+Q VV++ID+ R ++
Sbjct: 43   VLTAQVKSVEDHGYILYFGVSTFSGFMPK---CDKETVKIESGQLVQCVVKAIDKARAII 99

Query: 295  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
            +LS D D +SK + KDLKG+SID L+PGMM++ RV ++LENGVMLSFLTYFTGT DIF+L
Sbjct: 100  HLSCDEDLLSKSIIKDLKGLSIDHLIPGMMMNARVHTVLENGVMLSFLTYFTGTADIFNL 159

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
             N+FP+ NWK+DY+++KKVNARILFVDP++RAVGLTLN +LL    PP +VKVG+IY++S
Sbjct: 160  SNSFPSGNWKDDYSKNKKVNARILFVDPSTRAVGLTLNQHLLRFEVPPVNVKVGEIYERS 219

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            +V+R+D+  GL L+IPS P  +P +V+I DV++++V+K+EKK+KEGS  RVR+LG RHLE
Sbjct: 220  RVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKKVEKKFKEGSITRVRVLGVRHLE 278

Query: 475  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
            G+A G LK SAFEG VFTH+DVKPGMV                F GGVKALCPL HMSE 
Sbjct: 279  GVALGTLKDSAFEGSVFTHADVKPGMV----------------FAGGVKALCPLRHMSEL 322

Query: 535  E-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
            + +VKP KKFKVGAEL+FRVLG KSKRITVT+KK+LVKSKL +L+SYA+A   L+THGWI
Sbjct: 323  DNVVKPPKKFKVGAELLFRVLGCKSKRITVTYKKSLVKSKLEVLASYADAKIGLVTHGWI 382

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
            TKIEKHGCFVRFYNGV+GF  RSELGL+PG E  S+YHVGQVVKCRI+S +PAS ++N+S
Sbjct: 383  TKIEKHGCFVRFYNGVKGFVSRSELGLEPGTEAGSVYHVGQVVKCRIVSVVPASMKLNVS 442

Query: 654  FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 713
            F     R+ + D  K+G++VS VV+ +TP AVVV V   G+SKG+I  EHLADH  H   
Sbjct: 443  FATSSNRIIQADTAKVGTIVSAVVERLTPAAVVVSV--NGFSKGSILDEHLADH--H--- 495

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
                             D E  NL+LSAK SLINSA  +PS+ S +   +VVHGY+CNII
Sbjct: 496  -----------------DTEGQNLILSAKQSLINSANDIPSEISQMQAGAVVHGYICNII 538

Query: 774  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            E GCFVRFLG LTGF+P+ KAVD     LS  ++VGQSVRS+IL+VN+E+ R+ LSL+QS
Sbjct: 539  EAGCFVRFLGHLTGFSPKDKAVDIPMEKLSAAFFVGQSVRSHILNVNAESARLKLSLQQS 598

Query: 834  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
             CSS D SFMQ +FLL++KIA ++ S  + S   W +   IGS+++G+V    ++GV+++
Sbjct: 599  VCSSPDCSFMQGYFLLDQKIAEMKYSGSSTSH-DWKKSLGIGSLVKGEVGAVEEYGVILN 657

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            F++H DV G I HHQL G+TV+ GS ++  I+D++    +V+LSLK   I      + + 
Sbjct: 658  FKDHPDVVGLIEHHQLGGSTVKVGSSVKGLIVDLSDG--VVNLSLKPELI-----GSVSM 710

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQK 1013
              +KKKR R A  DL +H+ VNA+VEIVKE+Y+VLS+PEYNH+IG+A + DYN+Q  P  
Sbjct: 711  DGKKKKRHRAAVLDLELHEEVNAVVEIVKESYVVLSVPEYNHAIGFAPLMDYNSQLLPHH 770

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
             + NGQ +   V ++PSS  +GRL+LL K   +    SS R  KK S  VGSLV+AE+ +
Sbjct: 771  HYDNGQRITVVVGSIPSSDPSGRLILLPKTSGQGSGLSSSRKAKKLSDKVGSLVEAEVID 830

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS-NKPDMKK 1132
            IKPLEL +KFG+  HGRIHITEV +D  +  E+ FS  +IGQ + AR++A++ +  +  +
Sbjct: 831  IKPLELIVKFGVNHHGRIHITEVLEDDCS--EHPFSKLRIGQKIHARVVAQAEHSANSGR 888

Query: 1133 SFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
               WELSI+PS+L         L  + + S+   V  YV KVD EW  LT+SR++ A LF
Sbjct: 889  KLKWELSIRPSVLQGESKQLNALENKSNHSVNGIVRAYVVKVDREWVWLTVSRNVTAHLF 948

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
            ILDS+ EP EL+EFQ+R+ +G+AV G+++ +N+EKKLLRL  +   +    K +D +   
Sbjct: 949  ILDSSVEPIELKEFQQRYRVGQAVKGYIIGVNREKKLLRL--KALDNQAMLKNIDDTQKP 1006

Query: 1253 MQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
            + +      EGDI+GGRI KIL GVGGL++QIGPHL+GRVH+TE+ +  V +PLSG+ EG
Sbjct: 1007 ISSIAEHTKEGDIIGGRIQKILPGVGGLLIQIGPHLHGRVHYTEIVDSWVPEPLSGFHEG 1066

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
            QFVKCKVL +SR   G+  VELSLRSS+   S   S  L  D  T     E + DLSP  
Sbjct: 1067 QFVKCKVLAVSRPSEGSVRVELSLRSSILCTSHDPSRKLVDDSATCTTRFENVNDLSPGS 1126

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
             V+GYVKNV +KGCFIMLSR ++A+++LSNLSD YVE+P+K+F +G LV GRVLS EPLS
Sbjct: 1127 EVKGYVKNVNAKGCFIMLSRMIEARIILSNLSDEYVENPQKDFSVGMLVHGRVLSAEPLS 1186

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
             +VEV+L+      + +S+  + S+LHVGDI+ GQ+KRVESYGLF+TI+++ LVGLCHVS
Sbjct: 1187 GKVEVSLRKGTGSKSQKSDGISYSDLHVGDIIDGQVKRVESYGLFVTIQSSELVGLCHVS 1246

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN---DADNLQMSSEEE 1546
            ELS++ V +I + Y+AG+ VK KILK+D+E+RR+SLGMK SYF +   D  N     +E 
Sbjct: 1247 ELSDEPVLDINSCYKAGDMVKAKILKIDEERRRVSLGMKKSYFVSGLTDGINDDDDDDER 1306

Query: 1547 SDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDD-EQ 1605
                I  V                   +M S+   +LV+ + E RASV PL+V+LD+ E 
Sbjct: 1307 VPMDINHVP------------------EMSSDLNSALVVPEPEPRASVLPLQVSLDEYEG 1348

Query: 1606 PDMDNGISQNQGH--TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDE 1663
             D D   S ++G    +   +I +K+++  K+K +++RE +I A EER L+KD P+TPDE
Sbjct: 1349 SDQD---SDDKGPKIANGTGSIVQKSDKRLKEKARKQRELDISALEERALQKDIPKTPDE 1405

Query: 1664 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1723
            FE+LVRSSPNSSFVWI YMAF+L +ADVEKARS+AERAL+TIN+REE EKLN+WVAYFNL
Sbjct: 1406 FEKLVRSSPNSSFVWINYMAFLLDLADVEKARSVAERALRTINMREEEEKLNVWVAYFNL 1465

Query: 1724 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1783
            ENEYG P E+AV K+FQRA+QYCDPKKVHLALLG+YERT+Q++LADEL  +M K+FK SC
Sbjct: 1466 ENEYGCPREDAVKKIFQRAMQYCDPKKVHLALLGMYERTDQHELADELFDRMTKRFKTSC 1525

Query: 1784 KVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1841
            K+WLRR+Q  LKQ +  E +++++ RALLSLP+ K IKF+SQTAILEFK GV + GRS F
Sbjct: 1526 KIWLRRIQFSLKQGRDVEYIKSIINRALLSLPQSKRIKFLSQTAILEFKCGVPEEGRSRF 1585

Query: 1842 EGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901
            E IL EYPKRTDLWS+YLDQEIRLGD D+IR LF+R   LSLPPKKMKFLFKKYL YEKS
Sbjct: 1586 ELILREYPKRTDLWSVYLDQEIRLGDTDVIRALFDRVTCLSLPPKKMKFLFKKYLAYEKS 1645

Query: 1902 VGEEERIEYVKQKAMEYVESTLA 1924
             G+ ER+E V QKA EY + + A
Sbjct: 1646 QGDRERMELVMQKATEYAKISQA 1668



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 39/168 (23%)

Query: 135 MKLWGVVAEVNEKDLVICLPGGLRGLARAADALD-------PILDNEIEANEDNLLPTIF 187
           MKLWGVV EVN+KD+++ LPGG+RG  R  +  D        +L  ++++ ED+     F
Sbjct: 1   MKLWGVVIEVNQKDVIVSLPGGMRGFVRKDEVSDLALHGNHKVLTAQVKSVEDHGYILYF 60

Query: 188 HV-------------------GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL------- 221
            V                   GQLV C+V  +D       +  I LS    LL       
Sbjct: 61  GVSTFSGFMPKCDKETVKIESGQLVQCVVKAIDK-----ARAIIHLSCDEDLLSKSIIKD 115

Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 269
            KGLS++ +  GM++ A V ++ ++G +L F L  FTG     NL+ +
Sbjct: 116 LKGLSIDHLIPGMMMNARVHTVLENGVMLSF-LTYFTGTADIFNLSNS 162



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 123/307 (40%), Gaps = 42/307 (13%)

Query: 118  KLPRYANKITLKNISAGMKLWGVVAE-VNEKDLVICLPGG-----LRGLARAADALDPIL 171
            +L    N+  LKNI    K    +AE   E D++    GG     L G+      + P L
Sbjct: 987  RLKALDNQAMLKNIDDTQKPISSIAEHTKEGDII----GGRIQKILPGVGGLLIQIGPHL 1042

Query: 172  DNEIEANE--DNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG-- 224
               +   E  D+ +P   + FH GQ V C VL +   +   G  ++ LSLR S+L     
Sbjct: 1043 HGRVHYTEIVDSWVPEPLSGFHEGQFVKCKVLAV--SRPSEGSVRVELSLRSSILCTSHD 1100

Query: 225  LSLETVQEGMVLTAYVKSIED-------HGYILHFGLPSFTGFLPR--------NNLA-- 267
             S + V +    T   +++ D        GY+ +         L R        +NL+  
Sbjct: 1101 PSRKLVDDSATCTTRFENVNDLSPGSEVKGYVKNVNAKGCFIMLSRMIEARIILSNLSDE 1160

Query: 268  --ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMV 325
              EN   D   G+L+ G V S +     V +S    T SK    D  GIS   L  G ++
Sbjct: 1161 YVENPQKDFSVGMLVHGRVLSAEPLSGKVEVSLRKGTGSKSQKSD--GISYSDLHVGDII 1218

Query: 326  STRVQSILENGVMLSFLTY-FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 384
              +V+ +   G+ ++  +    G   +  L +  P  +  + Y     V A+IL +D   
Sbjct: 1219 DGQVKRVESYGLFVTIQSSELVGLCHVSELSDE-PVLDINSCYKAGDMVKAKILKIDEER 1277

Query: 385  RAVGLTL 391
            R V L +
Sbjct: 1278 RRVSLGM 1284


>gi|33235571|dbj|BAC79783.2| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group]
 gi|50508626|dbj|BAD31015.1| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group]
          Length = 1668

 Score = 1804 bits (4673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 948/1698 (55%), Positives = 1235/1698 (72%), Gaps = 80/1698 (4%)

Query: 235  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV 294
            VLTA VKSIEDHGYILHFG+ SF+GF+P+   A+     ++ G L+Q VV++ID+ R++V
Sbjct: 43   VLTAQVKSIEDHGYILHFGVSSFSGFMPK---ADRESAKIESGQLIQCVVKAIDKAREIV 99

Query: 295  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
            +LSSD D +SK + KDLKG+SID L+PGMMV+ RV S+LENGVMLSFLTYFTGT DIF+L
Sbjct: 100  HLSSDEDLLSKSIIKDLKGLSIDHLIPGMMVNARVHSVLENGVMLSFLTYFTGTADIFNL 159

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
             N+FP+ +WK+DY ++KKVNARILFVDP++RAVGLTLN  LL  + P  +VK G+IYD++
Sbjct: 160  SNSFPSGSWKDDYIKNKKVNARILFVDPSTRAVGLTLNQQLLRLKVPSINVKAGEIYDKA 219

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            +V+R+D+  GL L+IPS P  +P +V+I DV++++V+ +EKK+KEGS  RVR+LG RHLE
Sbjct: 220  RVLRMDKRAGLFLEIPS-PTPSPGFVSIHDVSDKDVKNVEKKFKEGSMARVRVLGVRHLE 278

Query: 475  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
            G+A G LK SAFEG VFTH+DVKPGMV                F  GVKALCPLPHMSE 
Sbjct: 279  GVAIGTLKESAFEGSVFTHADVKPGMV----------------FSSGVKALCPLPHMSEL 322

Query: 535  E-IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
            E +VKP KKFKVG EL FRVLG KSKRITVT KK+LVKSKL +L+SYA+A   L+THGWI
Sbjct: 323  EHVVKPPKKFKVGVELTFRVLGCKSKRITVTFKKSLVKSKLDVLASYADAKIGLLTHGWI 382

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
            TKIEKHGCFV+FYNGVQGF  RSELGL+PG E  ++YHVGQVVKCR++S +PASR+IN++
Sbjct: 383  TKIEKHGCFVKFYNGVQGFVSRSELGLEPGTEAENVYHVGQVVKCRVVSVVPASRKINVT 442

Query: 654  FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 713
            F++   RV + D  K+GS+VSGVV+ +TP AVVV V   G+ KG+I  EHLADH      
Sbjct: 443  FLISTNRVIQADTPKVGSIVSGVVERLTPAAVVVSV--NGFCKGSILNEHLADHR----- 495

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
                             D E  NL+LSAK SLIN A  +PS+ S +H  SV HGYVCNII
Sbjct: 496  -----------------DVEGQNLVLSAKQSLINCASDIPSEISQMHAGSVFHGYVCNII 538

Query: 774  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            E GCFVRFLG LTGF+P+ KAVD     LS  +YVGQSVRS+IL+VN+E+ R+ LSL+QS
Sbjct: 539  EAGCFVRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSHILNVNAESARVKLSLQQS 598

Query: 834  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
             CSS D SF+Q +FLL++KI  L+ S  + S   W+  F IG+++EG+V    ++GV+++
Sbjct: 599  MCSSADCSFVQGYFLLDQKITELKYSDPSSSFHDWLNTFAIGNLVEGEVGAIEEYGVILN 658

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            F+ H DV G I HHQL  ++VE GS ++  ++D++    +V++SLK+  +      + ++
Sbjct: 659  FQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDLSDG--VVNISLKSELV-----RSVSK 711

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQK 1013
              +KKKR R A  DL +H+ VNAIVEIVKE+++VLS+PEYN++IG+A + DYN+Q  P  
Sbjct: 712  VGKKKKRHRAAVMDLELHEEVNAIVEIVKESHVVLSIPEYNYAIGFAPLMDYNSQLLPCC 771

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS-SYDVGSLVQAEIT 1072
             + NGQ +   V ++PSS   GRLLLL KA  +  + SS +  KK   + VGSLV+AEI 
Sbjct: 772  NYENGQRITVVVGSMPSSGPTGRLLLLPKASGKNSSVSSSKRAKKKSDFKVGSLVEAEII 831

Query: 1073 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK- 1131
            +IKPLEL LKFG   HGRIHITEV DD SN  +  FS  +IG++V ARI+A++       
Sbjct: 832  DIKPLELLLKFGSNLHGRIHITEVFDDDSN--DCPFSELQIGRSVQARIVAEAEHSGKGG 889

Query: 1132 KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1191
            K+  WELSI+PS+L            E   SIG  V  YV KVD EW  LT+SR + A L
Sbjct: 890  KNSKWELSIRPSLLQGGLEDFTPPKAELRHSIGGIVHAYVVKVDREWIWLTVSRDVMAHL 949

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL---RPFQDGISDKTVDI 1248
            FILDS+ EP EL++FQ+R+ +G+AV G ++ +N+EK+LLRL     +   + I +    +
Sbjct: 950  FILDSSAEPGELEKFQQRYSVGQAVKGRIIGVNREKRLLRLKALDSQSLPENIGETQKPL 1009

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            S     T   +GDI+GGRI KIL GVGGLV+QIGPHL+GRVH+TE+ +  V +P+SG+ E
Sbjct: 1010 SATVEHT--KQGDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVDSWVQEPISGFHE 1067

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
            GQFVKCKVL++SR+  G+  V+LSLRSS+   +S  S  L  D        EKI DL P 
Sbjct: 1068 GQFVKCKVLDVSRSSEGSVRVDLSLRSSM-CANSNQSRRLFDDSRIRTSRFEKINDLCPG 1126

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
              V+GYVK+V SKGCFIM+SR ++A+++LSNLSD YVE+P+ +FP+G LV GRVLS EP 
Sbjct: 1127 TEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQNDFPVGLLVHGRVLSSEPQ 1186

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
            S +VEV+L+ +    + +S+  + S+LHVGDI+ GQ+KRVES+GLF+TI+ + LV LCHV
Sbjct: 1187 SGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVESFGLFVTIQGSELVALCHV 1246

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1548
            SELS++ V +I + ++AG+KVK KILK+D+E+ R+S+GMK SY   D+     +S++E D
Sbjct: 1247 SELSDEPVLDIHSCHKAGDKVKAKILKIDEERHRVSIGMKKSYIGPDSTG--DTSDDEDD 1304

Query: 1549 EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM 1608
            E + E  S N                M  +   +LVL + ESRASV PL+V+LD+ +   
Sbjct: 1305 EIVPEEISRNPV--------------MGRDRNHALVLPKPESRASVLPLQVSLDESEGSD 1350

Query: 1609 DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLV 1668
                ++ Q   +  +  D+K+N+  K+K +++RE EI A EER L++D P+TPDEFE+LV
Sbjct: 1351 QENDNKGQEIANGTEVDDKKSNKRLKEKARKQRELEISALEERALQRDIPQTPDEFEKLV 1410

Query: 1669 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1728
            RSSPNSSFVWI YMAF+L +ADV+KAR++AERAL+TINIREE EKLN+WVAYFNLENEYG
Sbjct: 1411 RSSPNSSFVWINYMAFLLDLADVDKARAVAERALRTINIREEEEKLNVWVAYFNLENEYG 1470

Query: 1729 NPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR 1788
            +P E+AV K+FQRALQYCDPKKVHLALL +YERTEQ  LADELL +M K+FK SCK+WLR
Sbjct: 1471 SPREDAVKKIFQRALQYCDPKKVHLALLAMYERTEQYTLADELLDRMTKRFKTSCKIWLR 1530

Query: 1789 RVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1846
             +Q  LKQ +  E ++ +V+RALLSLP+ K  KF+SQTAILEFK GV + GRS FE IL 
Sbjct: 1531 CIQLSLKQSKDVECIKLIVKRALLSLPQSKRRKFLSQTAILEFKCGVPEEGRSRFELILR 1590

Query: 1847 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906
            EYPKRTDLWS+YLDQEIRLGD ++IR LFER   LSLPPKKMKFLFKKYLEYEKS G+EE
Sbjct: 1591 EYPKRTDLWSVYLDQEIRLGDTEIIRALFERVTCLSLPPKKMKFLFKKYLEYEKSQGDEE 1650

Query: 1907 RIEYVKQKAMEYVESTLA 1924
            RIE+VKQKA+EYV+S+LA
Sbjct: 1651 RIEHVKQKALEYVQSSLA 1668



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 29/161 (18%)

Query: 135 MKLWGVVAEVNEKDLVICLPGGLRGLARAADALD-------PILDNEIEANEDNLLPTIF 187
           MKLWGVV EVN+KD+V+ LPGG+RG  R+ +  D        +L  ++++ ED+     F
Sbjct: 1   MKLWGVVIEVNQKDIVVSLPGGMRGFVRSEEVHDITSQETRKVLTAQVKSIEDHGYILHF 60

Query: 188 HV-------------------GQLVSCIVLQLDDDKK--EIGKRKIWLSLRLSLLYKGLS 226
            V                   GQL+ C+V  +D  ++   +   +  LS  +    KGLS
Sbjct: 61  GVSSFSGFMPKADRESAKIESGQLIQCVVKAIDKAREIVHLSSDEDLLSKSIIKDLKGLS 120

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA 267
           ++ +  GM++ A V S+ ++G +L F L  FTG     NL+
Sbjct: 121 IDHLIPGMMVNARVHSVLENGVMLSF-LTYFTGTADIFNLS 160


>gi|255581558|ref|XP_002531584.1| programmed cell death protein, putative [Ricinus communis]
 gi|223528780|gb|EEF30787.1| programmed cell death protein, putative [Ricinus communis]
          Length = 1330

 Score = 1779 bits (4609), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 916/1354 (67%), Positives = 1086/1354 (80%), Gaps = 79/1354 (5%)

Query: 615  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 674
            RSELG++PG + SSMYHVGQVVKCR++SS+PASRRINLSF MKPTRV +++ +KLGS+V+
Sbjct: 12   RSELGIEPGNDASSMYHVGQVVKCRVLSSLPASRRINLSFTMKPTRVPKEEALKLGSVVA 71

Query: 675  GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 734
            GVV+ VT NAV+VYV +KGY++G I TEHLAD  E A + KSV+KPGYEFDQLLVLD E+
Sbjct: 72   GVVEKVTSNAVIVYVNSKGYTRGIISTEHLADRHEQAALFKSVLKPGYEFDQLLVLDIEN 131

Query: 735  SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
            +NL+LSAKYSL+NSA QLPSD + IHP S+VHGY+CN+I+TGCFVRFLGRLTGF+P+SKA
Sbjct: 132  NNLVLSAKYSLVNSAHQLPSDLTEIHPQSIVHGYICNLIDTGCFVRFLGRLTGFSPKSKA 191

Query: 795  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 854
            +D Q+A LS+ +Y+GQSVRSNI+DV+SET RIT+SLKQS CSSTDASF+QE+FL+EEK+A
Sbjct: 192  MDNQKAQLSEAFYIGQSVRSNIIDVSSETNRITVSLKQSSCSSTDASFLQEYFLVEEKVA 251

Query: 855  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 914
             LQSS   G +LKWVEGF IG+V+E KV ES + G+VVSF++++DV GFITH+QL G TV
Sbjct: 252  ELQSSDSKGPDLKWVEGFNIGTVVEAKVEESKEVGIVVSFDKYNDVLGFITHYQLGGTTV 311

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            E+GS I+AA+LDVAK E LVDLSLK  F+D+  +  SN Q  KKKRKRE  K+L V+Q+V
Sbjct: 312  ETGSTIRAAVLDVAKTEHLVDLSLKPEFLDKCTDEKSNSQTHKKKRKREVLKNLEVYQSV 371

Query: 975  NAIVEIVKENYL----------------------------VLSLPEYNHSIGYASVSDYN 1006
             A+VEIVKENY+                            VLS+PE+N+ IGYASVSDYN
Sbjct: 372  TAVVEIVKENYMASALFFPLDDRCCTNSNVSSCSSVPLKQVLSIPEHNYIIGYASVSDYN 431

Query: 1007 TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDVGS 1065
             QK PQKQFLNGQSV+ATVMALPSSSTAGRLLLLLK+ISE TETSS+K+AKKKSSY +GS
Sbjct: 432  IQKLPQKQFLNGQSVVATVMALPSSSTAGRLLLLLKSISEITETSSTKKAKKKSSYKIGS 491

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
            LVQA                         EVNDD    +E+ F++FKIGQTVTARI+AK+
Sbjct: 492  LVQA-------------------------EVNDD--CFLEDPFTSFKIGQTVTARIVAKT 524

Query: 1126 NKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1184
            +K D  K+ LWELSIKP +LT   E   KL+ +E + S G R+TGYVYKVD+EWA LTIS
Sbjct: 525  SKAD--KNQLWELSIKPKVLTDFWESEDKLMSKEFEFSSGHRITGYVYKVDSEWAWLTIS 582

Query: 1185 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD----- 1239
            RHLKAQLFILDSA EPSELQEFQ+RF +GKAV+G+VLS NKEK LLRLV RP        
Sbjct: 583  RHLKAQLFILDSACEPSELQEFQKRFFVGKAVSGYVLSYNKEKTLLRLVQRPLCAVSCIH 642

Query: 1240 ------GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
                    +D   ++  DN   +I EGDIVGG+ISKILSGVGG++VQIGPH++G+VH+TE
Sbjct: 643  VNGEALNKNDAQNEVRRDNAAAYIQEGDIVGGKISKILSGVGGVLVQIGPHVHGKVHYTE 702

Query: 1294 LKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1353
            L+   V +PL GY EGQFVKCKVLEISR+ +GT H++LSLR SLDGM S NSS+LS + D
Sbjct: 703  LQESWVPNPLDGYREGQFVKCKVLEISRSDKGTTHIDLSLRFSLDGMLSQNSSELSKNAD 762

Query: 1354 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1413
               + +EKI+DL PN +VQGYVKNV  KGCFI LSRK+DAK+LLSNLSD +V SPE+EFP
Sbjct: 763  ---QRVEKIDDLQPNTVVQGYVKNVAPKGCFIFLSRKIDAKILLSNLSDEFVVSPEEEFP 819

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            IGKLV GRVLSVEPLSKRVEVTLK  ++++  +SE+N+LS L+VGD   G+IKRVE YGL
Sbjct: 820  IGKLVTGRVLSVEPLSKRVEVTLK-KNAKSTGKSELNDLSRLNVGDTASGRIKRVEPYGL 878

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1533
            FI I++TNLVGLCHVSELS+DHVD++ET YRAGEKV  +ILKVD E+RRISLG+K+    
Sbjct: 879  FIAIDHTNLVGLCHVSELSDDHVDSVETKYRAGEKVTARILKVDVERRRISLGIKNLDNG 938

Query: 1534 NDADNLQMSSEEESDEAIEEVGSYN--RSSLLENSSVAVQDMDMESEDGGSLVLAQIESR 1591
            ND D L   S+EES +AI E G+ +   S    +SS A++ MD+ESE+    VLA  ESR
Sbjct: 939  NDTDIL--PSQEESSDAISENGTTDDGDSKPHYSSSPAIEGMDIESENEEHAVLAHAESR 996

Query: 1592 ASVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEE 1650
            AS+PPL V LDD E  D+D+ ISQ Q   D+ K  DEK+ R AKKK KEEREQEIRAAEE
Sbjct: 997  ASIPPLNVTLDDVEHSDVDDTISQTQEQIDKTKIADEKDTRQAKKKVKEEREQEIRAAEE 1056

Query: 1651 RLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE 1710
            RLLEKD PRT DEFE+LV  SPN+SFVWIKYMAFML +AD+EKARSIAERAL+TIN REE
Sbjct: 1057 RLLEKDIPRTADEFEKLVHGSPNNSFVWIKYMAFMLDLADIEKARSIAERALRTINFREE 1116

Query: 1711 NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADE 1770
            NEKLN+WVAYFNLENEYGNPPEEAV  VFQRALQYCDPKKVHLALLG+YERTEQ+KLADE
Sbjct: 1117 NEKLNVWVAYFNLENEYGNPPEEAVKNVFQRALQYCDPKKVHLALLGVYERTEQHKLADE 1176

Query: 1771 LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830
            LL +M+KKFK SCK+WLRRVQR LKQ+Q+GVQ+ V+RALLSLPRHKHIKFISQ AILEFK
Sbjct: 1177 LLDRMVKKFKISCKIWLRRVQRHLKQEQDGVQSTVKRALLSLPRHKHIKFISQAAILEFK 1236

Query: 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1890
             GV DRGRSMFEGIL EYPKRTDLWS+YLDQEIRLGDVD+ R LFERA SLSLP KKM+F
Sbjct: 1237 CGVPDRGRSMFEGILREYPKRTDLWSVYLDQEIRLGDVDVTRTLFERATSLSLPAKKMQF 1296

Query: 1891 LFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            LFKKYLEYEKSVG+EE+IE VK+KAMEYVEST+A
Sbjct: 1297 LFKKYLEYEKSVGDEEQIESVKKKAMEYVESTMA 1330



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 15/169 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQF--PGGVKALCPLPHMSEFE--------IVKPGKKFKV 545
           +K G VV G V  V S   IV     G  + +    H+++          ++KPG +F  
Sbjct: 64  LKLGSVVAGVVEKVTSNAVIVYVNSKGYTRGIISTEHLADRHEQAALFKSVLKPGYEFDQ 123

Query: 546 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
                  VL +++  + ++ K +LV S   + S   E   + I HG+I  +   GCFVRF
Sbjct: 124 -----LLVLDIENNNLVLSAKYSLVNSAHQLPSDLTEIHPQSIVHGYICNLIDTGCFVRF 178

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              + GF+P+S+   +   + S  +++GQ V+  I+     + RI +S 
Sbjct: 179 LGRLTGFSPKSKAMDNQKAQLSEAFYIGQSVRSNIIDVSSETNRITVSL 227



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 20/216 (9%)

Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAF--EGLVFTHS---------------DVKPG 499
           Y+EG  V+ ++L     +   T I  +  F  +G++  +S               D++P 
Sbjct: 715 YREGQFVKCKVLEISRSDKGTTHIDLSLRFSLDGMLSQNSSELSKNADQRVEKIDDLQPN 774

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK-- 557
            VV+G V  V   G  +     + A   L ++S+  +V P ++F +G  +  RVL V+  
Sbjct: 775 TVVQGYVKNVAPKGCFIFLSRKIDAKILLSNLSDEFVVSPEEEFPIGKLVTGRVLSVEPL 834

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF-YNGVQGFAPRS 616
           SKR+ VT KK    +  + L+  +         G I ++E +G F+   +  + G    S
Sbjct: 835 SKRVEVTLKKNAKSTGKSELNDLSRLNVGDTASGRIKRVEPYGLFIAIDHTNLVGLCHVS 894

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           EL  D      + Y  G+ V  RI+      RRI+L
Sbjct: 895 ELSDDHVDSVETKYRAGEKVTARILKVDVERRRISL 930


>gi|356498361|ref|XP_003518021.1| PREDICTED: protein RRP5 homolog [Glycine max]
          Length = 2174

 Score = 1706 bits (4418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 866/1337 (64%), Positives = 1057/1337 (79%), Gaps = 57/1337 (4%)

Query: 13   SKDGPKFNKASKNQFKNSKKQINDAVEA---QDLALPPDDDVPVFPRGGGHSLTQRERDE 69
            S D PK +KASK  FK  K++ NDAV A   + L+L  +D+VP FPRGG  S   R    
Sbjct: 150  SVDKPKIDKASKKIFKPKKREQNDAVVAAKSEALSLQLEDEVPDFPRGGEFSAKGR---- 205

Query: 70   IHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLK 129
              ++ D EF A +     + KKK +    K+NE  DD GSL GDGI+GKLPR  N+ITLK
Sbjct: 206  --SDYD-EFSAEDPSRKTRKKKKGRSASSKSNEGADDWGSLSGDGITGKLPRRVNRITLK 262

Query: 130  NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHV 189
            NI+ GMKLWGVVAEVNEKDLV+ LPGGLRGL  A+DA+DPI D++IE  E   L  +F V
Sbjct: 263  NITPGMKLWGVVAEVNEKDLVVSLPGGLRGLVHASDAVDPIFDDKIEVGEI-FLSGVFCV 321

Query: 190  GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
            GQLVSC+VL+LDDDKKE G RKIWLSLRLSLL+K  +L+ VQEGMVL AYVKSIEDHGYI
Sbjct: 322  GQLVSCVVLRLDDDKKEKGSRKIWLSLRLSLLHKNYNLDVVQEGMVLAAYVKSIEDHGYI 381

Query: 250  LHFGLPSFTGFLPRNNLA-ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 308
            LHFGLPSF GFLP+N+ A + S   +K G LLQG+VR+ID+ RKVVYLSSDPDT+SK VT
Sbjct: 382  LHFGLPSFLGFLPKNSSAGKKSSNYLKIGKLLQGLVRTIDKVRKVVYLSSDPDTMSKSVT 441

Query: 309  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 368
            KDL+G+SIDLLVPGM+V+ RV+SILENGVMLSFLTYFTGTVD+FHLQN +P TNWK+  +
Sbjct: 442  KDLRGLSIDLLVPGMLVNARVKSILENGVMLSFLTYFTGTVDLFHLQNIYPGTNWKDKCS 501

Query: 369  QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 428
            + +KV +RILF+DP+SRAVGLTLNP+L+ NRAPPSHVK+GDIYD SKVVRVDRGLGLLL+
Sbjct: 502  ESQKVVSRILFIDPSSRAVGLTLNPHLVQNRAPPSHVKIGDIYDNSKVVRVDRGLGLLLE 561

Query: 429  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
            +PS P  TPA+V+               YKEG+ VRVRILG R+LEG+ATG+LKASA E 
Sbjct: 562  VPSIPEPTPAFVS---------------YKEGNRVRVRILGLRYLEGIATGVLKASALEE 606

Query: 489  LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 548
             VFTHSDVKPGMVVK K+++VDSFGAIVQ PGGVKALCPL HMSE EI KPGKKFKVGAE
Sbjct: 607  EVFTHSDVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEISKPGKKFKVGAE 666

Query: 549  LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            LVFRVLG KSKR+TVTHKKTLVKSKL I+SSYA+ATD LITHGWITKIE HGCFVRFYNG
Sbjct: 667  LVFRVLGCKSKRVTVTHKKTLVKSKLGIISSYADATDGLITHGWITKIEVHGCFVRFYNG 726

Query: 609  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            VQGFAPRSELGL+PG +P ++Y+VGQVVKCR++S IPASRRINL           +D+V 
Sbjct: 727  VQGFAPRSELGLEPGADPGTVYNVGQVVKCRVISCIPASRRINL-----------NDMVT 775

Query: 669  LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
            LGSLVSGVVD +T NAVVVYV A G+S+GTI  EHLADH   A +M S +KPGY FDQLL
Sbjct: 776  LGSLVSGVVDRITSNAVVVYVNASGFSRGTISMEHLADHHGQAILMHSRLKPGYNFDQLL 835

Query: 729  VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            VLD + +NL+LSAK SLI  AQQ+P+D + IHPNSVVHGY+CN+IE+GCFVRFLG LTGF
Sbjct: 836  VLDVKGNNLILSAKSSLIKHAQQIPADINQIHPNSVVHGYICNLIESGCFVRFLGHLTGF 895

Query: 789  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 848
            APR+KA D Q++++ + YY+GQSVRSNI +V+SETGR+TLSLKQ+ CSSTDASF+Q++FL
Sbjct: 896  APRNKAADDQKSNILEAYYIGQSVRSNISNVSSETGRVTLSLKQTACSSTDASFIQDYFL 955

Query: 849  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 908
            +++KIA LQ      S+ KW EGF IG V +GKV +  D G+ +SFE+H+DV+GFI ++Q
Sbjct: 956  MDDKIAKLQYWGSGASDSKWDEGFNIGMVAKGKVKDVEDVGLAISFEKHNDVFGFIANYQ 1015

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            LAG  +ESGSV++A +LDVAKA++LV+L+LK  FI+R +E+ S     KKKR+REASKDL
Sbjct: 1016 LAGTILESGSVVEALVLDVAKADKLVELTLKPEFINRSKES-STSHTNKKKRRREASKDL 1074

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 1028
             +HQTVNA+VEIVKENYLVLS+PE +++IGYASVSDYN Q+FP KQ+ NGQSV+ATVMAL
Sbjct: 1075 VLHQTVNAVVEIVKENYLVLSIPENDYTIGYASVSDYNAQRFPHKQYQNGQSVVATVMAL 1134

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 1088
            PS  T+GRLLLL   ++ T +S   + K      VG+LV+AEIT+IK LEL+LKFG G H
Sbjct: 1135 PSPETSGRLLLLPNEVNGTSSSKRTKKKSSYK--VGTLVEAEITDIKTLELKLKFGFGLH 1192

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD-MKKSFLWELSIKPSMLT- 1146
            GRIHITEV +   +V+EN FS +K+GQTVTARI+AK N+ D  +K   WELS++  M+T 
Sbjct: 1193 GRIHITEVQN--GSVLENPFSCYKVGQTVTARIVAKPNESDGNRKGSQWELSVRSEMVTG 1250

Query: 1147 ---VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1203
               + ++   L F+     IGQ V GYVYKV++EW  LTISR+++AQL+ILDSA EPSEL
Sbjct: 1251 SSDIDDVSENLEFK-----IGQCVAGYVYKVESEWIWLTISRNVRAQLYILDSAIEPSEL 1305

Query: 1204 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD---GISDKT-VDISNDNMQTFIHE 1259
            ++FQ R+H+G+ V+GHVLS+N EKKLLRLV+RPF     G S++  +++ +  +    HE
Sbjct: 1306 EDFQNRYHVGQPVSGHVLSVNMEKKLLRLVVRPFSTLPCGTSEEPHINVVDKGLTAHFHE 1365

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GDI+GGR+SKIL  VGGL+VQ+GP  YG+VHFTEL +  V DPLSGY EGQFVKC VLE+
Sbjct: 1366 GDILGGRVSKILPSVGGLLVQVGPRTYGKVHFTELADTLVPDPLSGYHEGQFVKCVVLEV 1425

Query: 1320 SRTVRGTFHVELSLRSS 1336
            S TV+GT HV+LSLRSS
Sbjct: 1426 SHTVKGTIHVDLSLRSS 1442



 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/573 (70%), Positives = 474/573 (82%), Gaps = 12/573 (2%)

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            K +EKIEDL P+MIV+GY+KNVT KGCFIMLSRK+DAK+LLSNLS+ YV+  EKEFPIGK
Sbjct: 1609 KCVEKIEDLHPDMIVKGYIKNVTPKGCFIMLSRKIDAKILLSNLSEQYVQELEKEFPIGK 1668

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
            LV GRV+SVEPLS RVEVTLKTS      +SEI +LS  HVGD++ G+IKRVES+GLFI 
Sbjct: 1669 LVIGRVISVEPLSNRVEVTLKTSTDPNIPKSEIIDLSKFHVGDVISGRIKRVESFGLFIA 1728

Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
            I+NTN+VGLCHVSE+S++ ++NIE  YRAGE+V  +ILKVD+E+ RISLGMK+SY + D 
Sbjct: 1729 IDNTNMVGLCHVSEISDNRIENIEANYRAGERVNARILKVDEERHRISLGMKNSYMR-DE 1787

Query: 1537 DNLQMSSEEESDEAIEE----VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRA 1592
              LQ+ SEEESDE I +    + S N SSLL  S++     D+E E     +L+Q++ RA
Sbjct: 1788 TMLQIPSEEESDEPITDGMKSITSMN-SSLLGTSNI-----DVEDEINQFPILSQVQQRA 1841

Query: 1593 SVPPLEVNLDD-EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEER 1651
             +PPL+V LDD +Q D++N  SQ++ H +E   ++EK+ R  KKK KEERE++IRAAEER
Sbjct: 1842 DIPPLDVPLDDFDQFDVNNTNSQSEEHANEEDIVNEKHKRREKKKAKEEREKQIRAAEER 1901

Query: 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1711
            LLE D PRT DEFE+L+RSSPNSSF WIKYM FM+SM DVEKARSIAERAL+TINIREEN
Sbjct: 1902 LLEDDVPRTADEFEKLIRSSPNSSFTWIKYMDFMVSMVDVEKARSIAERALRTINIREEN 1961

Query: 1712 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1771
            EKLNIW AYFNLEN+YGNP EEAV+KVFQRALQY DPKKV+LALLG+YERTEQ+ LADEL
Sbjct: 1962 EKLNIWKAYFNLENKYGNPREEAVMKVFQRALQYNDPKKVYLALLGMYERTEQHNLADEL 2021

Query: 1772 LYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
            L KM KKFKHSCKVWLRR+Q LLKQ Q+G+Q V+ RA LSLP+HKHIKF SQTAILEFK 
Sbjct: 2022 LNKMTKKFKHSCKVWLRRIQSLLKQNQDGIQPVIDRASLSLPKHKHIKFFSQTAILEFKV 2081

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1891
            GV DRGRSMFE IL EYPKRTDLWS+YLDQEI+  D D+IR LFERA+SLSLPPKKMKFL
Sbjct: 2082 GVLDRGRSMFEKILREYPKRTDLWSVYLDQEIQHKDKDIIRALFERAVSLSLPPKKMKFL 2141

Query: 1892 FKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            FKKYL YEKS G+EERIE VK+KAMEYVEST A
Sbjct: 2142 FKKYLYYEKSQGDEERIESVKRKAMEYVESTRA 2174



 Score = 79.0 bits (193), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 136/579 (23%), Positives = 248/579 (42%), Gaps = 102/579 (17%)

Query: 1018 GQSVIATVMALPSSSTAGRLLLLLK--AISETETS--------------------SSKRA 1055
            GQSV + +  +  SS  GR+ L LK  A S T+ S                     +  +
Sbjct: 916  GQSVRSNISNV--SSETGRVTLSLKQTACSSTDASFIQDYFLMDDKIAKLQYWGSGASDS 973

Query: 1056 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI-- 1113
            K    +++G + + ++ +++ + L + F               +K N V    +N+++  
Sbjct: 974  KWDEGFNIGMVAKGKVKDVEDVGLAISF---------------EKHNDVFGFIANYQLAG 1018

Query: 1114 -----GQTVTARI--IAKSNKPDMKKSFLWELSIKPSML------TVSEIGSKLLFEEC- 1159
                 G  V A +  +AK++K       L EL++KP  +      + S    K    E  
Sbjct: 1019 TILESGSVVEALVLDVAKADK-------LVELTLKPEFINRSKESSTSHTNKKKRRREAS 1071

Query: 1160 -DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-QRRFHIGKAVT 1217
             D+ + Q V   V  V   + +L+I  +     +   S Y     Q F  +++  G++V 
Sbjct: 1072 KDLVLHQTVNAVVEIVKENYLVLSIPENDYTIGYASVSDYNA---QRFPHKQYQNGQSVV 1128

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              V+++   +   RL+L P +    + T        ++    G +V   I+ I +    L
Sbjct: 1129 ATVMALPSPETSGRLLLLPNE---VNGTSSSKRTKKKSSYKVGTLVEAEITDIKTL--EL 1183

Query: 1278 VVQIGPHLYGRVHFTELKNICV-SDPLSGYDEGQFVKCKVLEISRTVRGT---FHVELSL 1333
             ++ G  L+GR+H TE++N  V  +P S Y  GQ V  +++       G       ELS+
Sbjct: 1184 KLKFGFGLHGRIHITEVQNGSVLENPFSCYKVGQTVTARIVAKPNESDGNRKGSQWELSV 1243

Query: 1334 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1393
            RS +   SS        D+D   ++LE          V GYV  V S+  ++ +SR + A
Sbjct: 1244 RSEMVTGSS--------DIDDVSENLE----FKIGQCVAGYVYKVESEWIWLTISRNVRA 1291

Query: 1394 K--VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK---TSDSRTASQSE 1448
            +  +L S +    +E  +  + +G+ V+G VLSV    K + + ++   T    T+ +  
Sbjct: 1292 QLYILDSAIEPSELEDFQNRYHVGQPVSGHVLSVNMEKKLLRLVVRPFSTLPCGTSEEPH 1351

Query: 1449 INNL-----SNLHVGDIVIGQIKRV-ESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1502
            IN +     ++ H GDI+ G++ ++  S G  +        G  H +EL++  V +  + 
Sbjct: 1352 INVVDKGLTAHFHEGDILGGRVSKILPSVGGLLVQVGPRTYGKVHFTELADTLVPDPLSG 1411

Query: 1503 YRAGEKVKVKILKVD---KEKRRISLGMKSSYFKNDADN 1538
            Y  G+ VK  +L+V    K    + L ++SS  K   D+
Sbjct: 1412 YHEGQFVKCVVLEVSHTVKGTIHVDLSLRSSNVKLSQDS 1450



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D+ P M+V+  + +V S G  + +   + A   L ++S+  +  P K+F +G  +  RVL
Sbjct: 613  DVKPGMVVKAKILSVDSFGAIVQIPGGVKALCPLRHMSELEISKPGKKFKVGAELVFRVL 672

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
              +  SKRV VT K    +T  +S+   I++ ++   G I  G I ++E +G F+   N 
Sbjct: 673  GCK--SKRVTVTHK----KTLVKSKLGIISSYADATDGLITHGWITKIEVHGCFVRFYN- 725

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1525
             + G    SEL  +   +  T+Y  G+ VK +++      RRI+L
Sbjct: 726  GVQGFAPRSELGLEPGADPGTVYNVGQVVKCRVISCIPASRRINL 770



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 13/181 (7%)

Query: 1142 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201
            P  + V    SK + +  D+     V GY+  V  +   + +SR + A+  IL S     
Sbjct: 1598 PKSIVVRNANSKCVEKIEDLHPDMIVKGYIKNVTPKGCFIMLSRKIDAK--ILLSNLSEQ 1655

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT--VDISNDNMQTFIHE 1259
             +QE ++ F IGK V G V+S+      + + L+   D    K+  +D+S        H 
Sbjct: 1656 YVQELEKEFPIGKLVIGRVISVEPLSNRVEVTLKTSTDPNIPKSEIIDLSK------FHV 1709

Query: 1260 GDIVGGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318
            GD++ GRI ++ S   GL + I   ++ G  H +E+ +  + +  + Y  G+ V  ++L+
Sbjct: 1710 GDVISGRIKRVES--FGLFIAIDNTNMVGLCHVSEISDNRIENIEANYRAGERVNARILK 1767

Query: 1319 I 1319
            +
Sbjct: 1768 V 1768



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 31/192 (16%)

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
            +HP+ +V GY+ N+   GCF+    ++      S   +    +L K + +G+ V   ++ 
Sbjct: 1617 LHPDMIVKGYIKNVTPKGCFIMLSRKIDAKILLSNLSEQYVQELEKEFPIGKLVIGRVIS 1676

Query: 819  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
            V   + R+ ++LK    +STD +  +                   SE+  +  F +G VI
Sbjct: 1677 VEPLSNRVEVTLK----TSTDPNIPK-------------------SEIIDLSKFHVGDVI 1713

Query: 879  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 931
             G++     FG+ ++  +++++ G     +++   +E       +G  + A IL V +  
Sbjct: 1714 SGRIKRVESFGLFIAI-DNTNMVGLCHVSEISDNRIENIEANYRAGERVNARILKVDEER 1772

Query: 932  RLVDLSLKTVFI 943
              + L +K  ++
Sbjct: 1773 HRISLGMKNSYM 1784



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 12/184 (6%)

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            D+ P M+VKG +  V   G  +     + A   L ++SE  + +  K+F +G  ++ RV+
Sbjct: 1616 DLHPDMIVKGYIKNVTPKGCFIMLSRKIDAKILLSNLSEQYVQELEKEFPIGKLVIGRVI 1675

Query: 555  GVK--SKRITVTHKKT----LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 607
             V+  S R+ VT K +    + KS++  LS +       +  G I ++E  G F+   N 
Sbjct: 1676 SVEPLSNRVEVTLKTSTDPNIPKSEIIDLSKFHVGD---VISGRIKRVESFGLFIAIDNT 1732

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
             + G    SE+  +      + Y  G+ V  RI+       RI+L   MK + + ++ ++
Sbjct: 1733 NMVGLCHVSEISDNRIENIEANYRAGERVNARILKVDEERHRISLG--MKNSYMRDETML 1790

Query: 668  KLGS 671
            ++ S
Sbjct: 1791 QIPS 1794



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 31/195 (15%)

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
            I  + PN +V GY+ N+   GCF+     L      +  +D    +  + + IG+ V   
Sbjct: 863  INQIHPNSVVHGYICNLIESGCFVRFLGHLTGFAPRNKAADDQKSNILEAYYIGQSVRSN 922

Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNL-----------------------SNLHVG 1458
            + +V   + RV ++LK +   +   S I +                           ++G
Sbjct: 923  ISNVSSETGRVTLSLKQTACSSTDASFIQDYFLMDDKIAKLQYWGSGASDSKWDEGFNIG 982

Query: 1459 DIVIGQIKRVESYGLFITIENTN-LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
             +  G++K VE  GL I+ E  N + G     +L+        TI  +G  V+  +L V 
Sbjct: 983  MVAKGKVKDVEDVGLAISFEKHNDVFGFIANYQLA-------GTILESGSVVEALVLDVA 1035

Query: 1518 KEKRRISLGMKSSYF 1532
            K  + + L +K  + 
Sbjct: 1036 KADKLVELTLKPEFI 1050


>gi|12322020|gb|AAG51058.1|AC069473_20 rRNA biogenesis protein, putative, 3' partial; 75505-85642
            [Arabidopsis thaliana]
          Length = 1396

 Score = 1644 bits (4258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 851/1398 (60%), Positives = 1072/1398 (76%), Gaps = 56/1398 (4%)

Query: 39   EAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTER 98
            EA  L L   +DVP FPRGGG SL+++ER++++ EVDAEF+A ER      K K  K+++
Sbjct: 39   EAMALQL---EDVPDFPRGGGTSLSKKEREKLYEEVDAEFDADER---VSKKSKGGKSKK 92

Query: 99   KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
            +    +DDLG LFG G+ GK PRYANKIT KNIS GMKL GVV EVN+KD+VI LPGGLR
Sbjct: 93   RIPSDLDDLGLLFGGGLHGKRPRYANKITTKNISPGMKLLGVVTEVNQKDIVISLPGGLR 152

Query: 159  GLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
            GL RA++  D   D  IE +E+ LL  IF VGQLV CIVL+LDDDKKE GKRKIWLSLRL
Sbjct: 153  GLVRASEVSD-FTDRGIEDDENELLGDIFSVGQLVPCIVLELDDDKKEAGKRKIWLSLRL 211

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-RNNLAENSGIDVKPG 277
            SLL+KG S ++ Q GMV +A VKSIEDHG ILHFGLPS TGF+   ++  + SG+  K G
Sbjct: 212  SLLHKGFSFDSFQLGMVFSANVKSIEDHGSILHFGLPSITGFIEISDDGNQESGM--KTG 269

Query: 278  LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
             L+QGVV  IDR RK+V+LSSDPD+V+KC+TKDL G+S DLL+PGMMV+ RVQS+LENG+
Sbjct: 270  QLIQGVVTKIDRDRKIVHLSSDPDSVAKCLTKDLSGMSFDLLIPGMMVNARVQSVLENGI 329

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH 397
            +  FLTYF GTVD+FHL+N     +WK++YNQ+K VNARILF+DP+SRAVGLTL+P+++ 
Sbjct: 330  LFDFLTYFNGTVDLFHLKNPLSNKSWKDEYNQNKTVNARILFIDPSSRAVGLTLSPHVVC 389

Query: 398  NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
            N+APP HV  GDI+D++KVVR+D+  GLLL++PS P  TPAYV+  D A +EV KLEKK+
Sbjct: 390  NKAPPLHVFSGDIFDEAKVVRIDKS-GLLLELPSKPTPTPAYVSTYDAAGDEVTKLEKKF 448

Query: 458  KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
            KEG+ +RVR+LG + +EGLA G LK SAFEG VFTHSDVKPGMV K KVI+VD+FGAIVQ
Sbjct: 449  KEGNHIRVRVLGLKQMEGLAVGTLKESAFEGPVFTHSDVKPGMVTKAKVISVDTFGAIVQ 508

Query: 518  FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAIL 577
            F GG+KA+CPL HMSEFE+ KP KKFKVGAELVFRVLG KSKRITVT+KKTLVKSKL IL
Sbjct: 509  FSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVLGCKSKRITVTYKKTLVKSKLPIL 568

Query: 578  SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
            SSY +AT+ L+THGWITKIEKHGCFVRFYNGVQGF PR ELGL+PG +P S++HVG+VVK
Sbjct: 569  SSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELGLEPGSDPDSVFHVGEVVK 628

Query: 638  CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
            CR+ S++  ++RI LSFM+KP+ VSEDD +KLGS+VSG++D +T  AV+V V +K   KG
Sbjct: 629  CRVTSAVHGTQRITLSFMIKPSSVSEDDSIKLGSIVSGIIDTITSQAVIVRVKSKSVVKG 688

Query: 698  TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
            TI  EHLADH E A ++ S+++PGYE D+LLVLD E +N+ LS+KYSLI  A++LPSD +
Sbjct: 689  TISAEHLADHHEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSLIKLAEELPSDFN 748

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             + PNSVVHGYVCN+IE GCFVRFLGRLTGFAPRSKA+D  +AD+S++++VGQSVR+NI+
Sbjct: 749  QLQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANIV 808

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
            DVN E  RITLSLKQS C+S DASF+QE+FL++EKI+ LQSS    S+  WVE F IGS+
Sbjct: 809  DVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGSL 868

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            I+G + E ND GVVV+F+  ++V GFI  H + GAT+  GSV+ A +LD+++AERLVDLS
Sbjct: 869  IKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVNAVVLDISRAERLVDLS 928

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
            L+   ++   +  SN  + KKKRKR  SK+L VHQ V+A+VEIVKE +LVLS+PE+ ++I
Sbjct: 929  LRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQRVSAVVEIVKEQHLVLSIPEHGYTI 986

Query: 998  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAK 1056
            GYASVSDYNTQK P KQF  GQSV+A+V A+ +  T+GRLLLLL ++S T ETS SKRAK
Sbjct: 987  GYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLTSGRLLLLLDSVSGTSETSRSKRAK 1046

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 1116
            KKSS +VGS+V AE                         VND  ++  +  F+ F++GQ+
Sbjct: 1047 KKSSCEVGSVVHAE-------------------------VND--ASTSDEPFAKFRVGQS 1079

Query: 1117 VTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
            ++AR++AK    D+KK+ LWELS+KP+ML   SE       E+ + + GQ V GYVYKVD
Sbjct: 1080 ISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFNDTQESEQLEFAAGQCVIGYVYKVD 1139

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             EW  L +SR++ A++FILD++ +  EL+EF+RRF IGKAV+G+VL+ NKEKK LRLV R
Sbjct: 1140 KEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFPIGKAVSGYVLTYNKEKKTLRLVQR 1199

Query: 1236 PF-------QDGISDKT----VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
            P         +G   KT      I  D+   FIHEGDI+GGRISKIL GVGGL VQ+GP+
Sbjct: 1200 PLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEGDILGGRISKILPGVGGLRVQLGPY 1259

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1344
            ++GRVHFTE+ +  V DPL G+ EGQFVKCKVLEIS + +GT+ +ELSLR+SLDGMSS +
Sbjct: 1260 VFGRVHFTEINDSWVPDPLDGFREGQFVKCKVLEISSSSKGTWQIELSLRTSLDGMSSAD 1319

Query: 1345 --SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
              S DL  + D   K  E+IEDLSP+M VQGYVKN  SKGCFI+LSR ++AKV LSNL D
Sbjct: 1320 HLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCD 1378

Query: 1403 GYVESPEKEFPIGKLVAG 1420
             +V+ PEKEFP+GKLV G
Sbjct: 1379 TFVKEPEKEFPVGKLVTG 1396



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 199/920 (21%), Positives = 366/920 (39%), Gaps = 170/920 (18%)

Query: 676  VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESS 735
            V+ V T  A+V +    G  K   P  H+++     T  +   K G E     VL  +S 
Sbjct: 497  VISVDTFGAIVQF---SGGLKAMCPLRHMSEF--EVTKPRKKFKVGAEL-VFRVLGCKSK 550

Query: 736  NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
             + ++ K +L+ S   + S  +      V HG++  I + GCFVRF   + GF PR +  
Sbjct: 551  RITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGVQGFVPRFELG 610

Query: 796  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLS--LKQSCCSSTDASFMQEHFLLEEKI 853
                +D    ++VG+ V+  +      T RITLS  +K S  S  D+             
Sbjct: 611  LEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSEDDS------------- 657

Query: 854  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                                +GS++ G +       V+V  +  S V G I+   LA   
Sbjct: 658  ------------------IKLGSIVSGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHH 699

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK---KRKREASKDLGV 970
             E   +I + +    + ++L+ L +         E N+   + K    K   E   D   
Sbjct: 700  -EQAKLIMSLLRPGYELDKLLVLDI---------EGNNMALSSKYSLIKLAEELPSDFNQ 749

Query: 971  HQ---TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDY--NTQKFPQKQFLNGQSVIATV 1025
             Q    V+  V  + EN   +         G+A  S    + +    + F  GQSV A +
Sbjct: 750  LQPNSVVHGYVCNLIENGCFVRF--LGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANI 807

Query: 1026 -----------MALPSSSTAG-------RLLLLLKAISETETSSSKRAKKK--SSYDVGS 1065
                       ++L  SS A           L+ + IS+ ++S   ++       + +GS
Sbjct: 808  VDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGS 867

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
            L++  I E   L + + F              D+ +NV+  +  +   G T+    +  +
Sbjct: 868  LIKGTIQEQNDLGVVVNF--------------DNINNVLGFIPQHHMGGATLVPGSVVNA 913

Query: 1126 NKPDMKKS-FLWELSIKPSMLT--VSEIGS-------KLLFEECDVSIGQRVTGYVYKVD 1175
               D+ ++  L +LS++P +L     E+ +       + + +E +V   QRV+  V  V 
Sbjct: 914  VVLDISRAERLVDLSLRPELLNNLTKEVSNSSKKKRKRGISKELEVH--QRVSAVVEIVK 971

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +  +L+I  H     +   S Y   +L    ++F  G++V   V          + V  
Sbjct: 972  EQHLVLSIPEHGYTIGYASVSDYNTQKLP--VKQFSTGQSVVASV----------KAVQN 1019

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
            P   G     +D  +   +T   +      R  K  S   G VV             E+ 
Sbjct: 1020 PLTSGRLLLLLDSVSGTSETSRSK------RAKKKSSCEVGSVVH-----------AEVN 1062

Query: 1296 NICVSD-PLSGYDEGQFVKCKVLE--ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1352
            +   SD P + +  GQ +  +V+       ++ T   ELS++ ++      +SS+ +   
Sbjct: 1063 DASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAM----LKDSSEFN--- 1115

Query: 1353 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEK 1410
            DT  +  E++E  +    V GYV  V  +  ++ +SR + A++ + + S     +E  E+
Sbjct: 1116 DT--QESEQLE-FAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFER 1172

Query: 1411 EFPIGKLVAGRVLSVEPLSKRVEVTLKT---------------SDSRTASQSEINNLSNL 1455
             FPIGK V+G VL+     K + +  +                +D   +S    ++   +
Sbjct: 1173 RFPIGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFI 1232

Query: 1456 HVGDIVIGQIKRVES--YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
            H GDI+ G+I ++     GL + +    + G  H +E+++  V +    +R G+ VK K+
Sbjct: 1233 HEGDILGGRISKILPGVGGLRVQL-GPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKV 1291

Query: 1514 LKVDKEKR---RISLGMKSS 1530
            L++    +   +I L +++S
Sbjct: 1292 LEISSSSKGTWQIELSLRTS 1311



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 13/185 (7%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D+ P M+ +  V +V + G  +  S  L A   L ++S+  V  P K+F +G  +  RVL
Sbjct: 486  DVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAELVFRVL 545

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1480
              +  SKR+ VT K    +T  +S++  LS   +   G +  G I ++E +G F+   N 
Sbjct: 546  GCK--SKRITVTYK----KTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYN- 598

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG--MKSSYFKNDADN 1538
             + G     EL  +   + ++++  GE VK ++       +RI+L   +K S    D D+
Sbjct: 599  GVQGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSED-DS 657

Query: 1539 LQMSS 1543
            +++ S
Sbjct: 658  IKLGS 662



 Score = 46.6 bits (109), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 81/210 (38%), Gaps = 29/210 (13%)

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            L PN +V GYV N+   GCF+    +L      S   D       + F +G+ V   ++ 
Sbjct: 750  LQPNSVVHGYVCNLIENGCFVRFLGRLTGFAPRSKAIDDPKADVSESFFVGQSVRANIVD 809

Query: 1425 VEPLSKRVEVTLKTSD-----------------------SRTASQSEINNLSNLHVGDIV 1461
            V     R+ ++LK S                        S   ++S+ + +    +G ++
Sbjct: 810  VNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSDCSWVEKFSIGSLI 869

Query: 1462 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
             G I+     G+ +  +N N V    +  + + H+     +   G  V   +L + + +R
Sbjct: 870  KGTIQEQNDLGVVVNFDNINNV----LGFIPQHHMGGATLV--PGSVVNAVVLDISRAER 923

Query: 1522 RISLGMKSSYFKNDADNLQMSSEEESDEAI 1551
             + L ++     N    +  SS+++    I
Sbjct: 924  LVDLSLRPELLNNLTKEVSNSSKKKRKRGI 953



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 25/201 (12%)

Query: 1348 LSTDVDTPGKHLEKIEDLS--------PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
            LS+D D+  K L K  DLS        P M+V   V++V   G         +  V L +
Sbjct: 288  LSSDPDSVAKCLTK--DLSGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFH 345

Query: 1400 LSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV- 1457
            L +    +S + E+   K V  R+L ++P S+ V +TL       +     N    LHV 
Sbjct: 346  LKNPLSNKSWKDEYNQNKTVNARILFIDPSSRAVGLTL-------SPHVVCNKAPPLHVF 398

Query: 1458 -GDIVI-GQIKRVESYGLFITIENTNLVGLCHVS--ELSEDHVDNIETIYRAGEKVKVKI 1513
             GDI    ++ R++  GL + + +       +VS  + + D V  +E  ++ G  ++V++
Sbjct: 399  SGDIFDEAKVVRIDKSGLLLELPSKPTPTPAYVSTYDAAGDEVTKLEKKFKEGNHIRVRV 458

Query: 1514 LKVDKEKRRISLG-MKSSYFK 1533
            L + K+   +++G +K S F+
Sbjct: 459  LGL-KQMEGLAVGTLKESAFE 478


>gi|449519617|ref|XP_004166831.1| PREDICTED: protein RRP5 homolog, partial [Cucumis sativus]
          Length = 1323

 Score = 1523 bits (3943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 810/1332 (60%), Positives = 1003/1332 (75%), Gaps = 61/1332 (4%)

Query: 615  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 674
            R ELG++PG +PSS YH+GQV+KCRI SS  +S+RI+LSF+MKP RVSED  V+LG +V+
Sbjct: 31   RFELGIEPGSDPSSTYHIGQVIKCRITSSTHSSKRISLSFVMKPARVSEDTKVELGCIVT 90

Query: 675  GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 734
            GVVD +T   V +Y+    YS+G I TEHL+DH  HA+ +KSV+KPGY+FDQLLVL  E 
Sbjct: 91   GVVDEITETHVTLYINRTDYSRGRISTEHLSDHQAHASSIKSVLKPGYQFDQLLVLAIEG 150

Query: 735  SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
             +L+LSAK SLI  A  LPSD+SH++P S++HG++CNIIE GCFVRFLGRLTGF+PR+KA
Sbjct: 151  ESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICNIIEAGCFVRFLGRLTGFSPRNKA 210

Query: 795  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 854
            +  Q+ DL +TYY+GQSVRSN++DV+ ETGRITLSLKQS C STDASF+QE F  EEKIA
Sbjct: 211  MQDQKLDLRETYYIGQSVRSNVVDVSGETGRITLSLKQSTCFSTDASFIQEFFSTEEKIA 270

Query: 855  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 914
             LQS      E  W E F IGSV+EG+V E  D GV +SFE++ DV+GFI  H L+G+ V
Sbjct: 271  KLQSL----DESNWAEEFAIGSVVEGEVQEVKDIGVTISFEKYHDVFGFIALHGLSGSIV 326

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            E+GS IQAA+LDV+K ERLVDLSLK   +D+++  +S+RQ  +KKRK EA KDL ++QTV
Sbjct: 327  ETGSTIQAAVLDVSKTERLVDLSLKPELVDKWKGGSSSRQTNRKKRKAEAPKDLEMNQTV 386

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 1034
            + +VE VKENYLVLSLPE+ H+IGYAS  DYNTQ+  QK F  GQSV+ATV+ALP  ST 
Sbjct: 387  HTVVEAVKENYLVLSLPEFGHAIGYASTYDYNTQRLHQKHFTVGQSVVATVVALPCPSTF 446

Query: 1035 GRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
            GRLLLLLK+ISE   T  SKR++K SS +VGSLV AE++                     
Sbjct: 447  GRLLLLLKSISEAIVTPGSKRSRKNSSCEVGSLVHAEVSNTP------------------ 488

Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK-KSFLWELSIKPSMLT-VSEIG 1151
                D+ S   E  FSNF++GQTV ARI+A++N    K K +LWELS+KP +L   S +G
Sbjct: 489  ----DEAS---EAPFSNFRVGQTVVARIVAEANHSASKVKGYLWELSVKPEVLKDFSAVG 541

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
             +++ E+   SIGQRVT YV  V+ +WA L ++R + AQLFILDS+ EPSELQEF + F+
Sbjct: 542  GEIVNEDLGFSIGQRVTAYVSNVNGDWAWLAVTRRVSAQLFILDSSSEPSELQEFSKHFY 601

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLR---PFQDGISD----KTVDISNDNMQTFI---HEGD 1261
            +GKAV+G++ +I  EKK+LRLVL        G SD    K  ++  D  +  I   +EGD
Sbjct: 602  VGKAVSGYISNIIGEKKILRLVLHHLSAISSGKSDQENSKISNLPTDVCKKVICHLNEGD 661

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISR 1321
            IVGGRISKIL GVGGL+VQIGPHL+GRVH+TEL +  V DPLSGY EGQFVKCKV+EI+ 
Sbjct: 662  IVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPLSGYKEGQFVKCKVIEITH 721

Query: 1322 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1381
             V+GT H++LSLRSS   +   N    + +    G+   KIED+  +M VQGYVKN++ K
Sbjct: 722  AVKGTTHIDLSLRSSAGILCQKNIECSNHENIASGR--VKIEDIHAHMEVQGYVKNISPK 779

Query: 1382 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            GCFIMLSR L+AK+LLSNLSDGY+++PEKEFP GKLV GR+LSVEPLSKRVEVTLK+   
Sbjct: 780  GCFIMLSRGLEAKILLSNLSDGYIDNPEKEFPTGKLVRGRILSVEPLSKRVEVTLKSVTE 839

Query: 1442 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1501
              A +   N+L +   GDI+ G+IKRVES+GLFI+I+NT++VGLCHVSE+S+D V+++E 
Sbjct: 840  TGALRGSNNDLRSFSAGDIISGRIKRVESFGLFISIDNTDVVGLCHVSEVSDDPVESLEF 899

Query: 1502 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEE---VGSYN 1558
             Y AG+ VK K+LKVD+++ RI+LGMK SY   +   L  + EEE ++A +    +G   
Sbjct: 900  RYHAGDTVKAKVLKVDEKRHRIALGMKRSYI-GERSELCTNMEEEHEDAADGDNFIGETR 958

Query: 1559 RSSLLENSSVAVQDM-----DMESEDGGSLVLAQIESRASVPPLEVNLDD-EQPDMDNGI 1612
             S   ++SS   +DM     ++E E    L LA  ESRA VP LEV LDD ++ DM    
Sbjct: 959  LSMDPDSSSTKFKDMDDDFDNIEPEQ--PLRLA--ESRALVPSLEVTLDDIDETDMVTLQ 1014

Query: 1613 SQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSP 1672
            S+N+  T    +  EKN+R  KKK KEERE E+RAAEERLL+ ++P T DEFE+LVRSSP
Sbjct: 1015 SENKELTSGTDS-KEKNDRREKKKAKEEREMEVRAAEERLLQNNSPTTVDEFEKLVRSSP 1073

Query: 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1732
            NSSFVWIKYM F    ADVEKARSIAERAL+TINIREENEKLN+W+AYFNLENEYGNP E
Sbjct: 1074 NSSFVWIKYMDFF--KADVEKARSIAERALRTINIREENEKLNVWLAYFNLENEYGNPKE 1131

Query: 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792
            +AV K+FQRALQ  DPKKVHLALLG+YERT Q+ LADELL KMIK+FKHSCKVWLRR++ 
Sbjct: 1132 DAVTKIFQRALQCNDPKKVHLALLGMYERTNQDNLADELLDKMIKRFKHSCKVWLRRMES 1191

Query: 1793 LLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1852
            L K++Q  +Q++V RALL LP+ KHIK+ISQTAILEFK GVADRGRSMFEGIL EYPKRT
Sbjct: 1192 LFKKKQVEIQSIVNRALLCLPKRKHIKYISQTAILEFKCGVADRGRSMFEGILREYPKRT 1251

Query: 1853 DLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1912
            DLWSIYLDQEIRLGD D+IR LFERAISLSL PKKMKFLFKKYLEYEKSVG+EERIE VK
Sbjct: 1252 DLWSIYLDQEIRLGDKDMIRALFERAISLSLAPKKMKFLFKKYLEYEKSVGDEERIESVK 1311

Query: 1913 QKAMEYVESTLA 1924
            QKA+EYVE+TLA
Sbjct: 1312 QKALEYVENTLA 1323



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 5/119 (4%)

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
           ++KPG +F         VL ++ + + ++ K++L+K    + S  +      I HG+I  
Sbjct: 133 VLKPGYQFDQ-----LLVLAIEGESLILSAKQSLIKLAHMLPSDSSHVNPYSIIHGFICN 187

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           I + GCFVRF   + GF+PR++   D   +    Y++GQ V+  ++     + RI LS 
Sbjct: 188 IIEAGCFVRFLGRLTGFSPRNKAMQDQKLDLRETYYIGQSVRSNVVDVSGETGRITLSL 246



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 121/288 (42%), Gaps = 39/288 (13%)

Query: 404 HVKVGDIYDQSKVVRVDRGLG-LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
           H+  GDI    ++ ++  G+G LL+ I         Y  ++D     V      YKEG  
Sbjct: 656 HLNEGDIVG-GRISKILPGVGGLLVQIGPHLFGRVHYTELTDCL---VPDPLSGYKEGQF 711

Query: 463 VRVRILGFRHLEGLATGI---LKASAFEGLVF-------THSDVKPG----------MVV 502
           V+ +++   H     T I   L++SA  G++         H ++  G          M V
Sbjct: 712 VKCKVIEITHAVKGTTHIDLSLRSSA--GILCQKNIECSNHENIASGRVKIEDIHAHMEV 769

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKR 560
           +G V  +   G  +    G++A   L ++S+  I  P K+F  G  +  R+L V+  SKR
Sbjct: 770 QGYVKNISPKGCFIMLSRGLEAKILLSNLSDGYIDNPEKEFPTGKLVRGRILSVEPLSKR 829

Query: 561 ITVTHKKTLVKSKLA----ILSSYAEATDRLITHGWITKIEKHGCFVRFYN-GVQGFAPR 615
           + VT K       L      L S++ A D  I  G I ++E  G F+   N  V G    
Sbjct: 830 VEVTLKSVTETGALRGSNNDLRSFS-AGD--IISGRIKRVESFGLFISIDNTDVVGLCHV 886

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
           SE+  DP       YH G  VK +++       RI L   MK + + E
Sbjct: 887 SEVSDDPVESLEFRYHAGDTVKAKVLKVDEKRHRIALG--MKRSYIGE 932


>gi|168031842|ref|XP_001768429.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680354|gb|EDQ66791.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1785

 Score = 1462 bits (3785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 815/1849 (44%), Positives = 1175/1849 (63%), Gaps = 123/1849 (6%)

Query: 135  MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 194
            MK+WG VAE+N KD+VI LPGGLRG   A +A      +E+  NE  LL  +F VGQLV+
Sbjct: 1    MKIWGAVAEINNKDMVISLPGGLRGFVLAEEA------SEVFENEVPLLSDLFSVGQLVA 54

Query: 195  CIV--LQLDDDKKEIGK-----------RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
            C V  L+L  +KK  GK           R+I LSL+L  LY GLS+E V EG  LTA V 
Sbjct: 55   CTVRKLELTQEKKGRGKPEKEGKNEKRGRRIELSLKLGYLYDGLSIEAVYEGQALTAVVT 114

Query: 242  SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
            SIEDHGY+L FG+P+ +GFL   N  + +   ++ G L+QGVV S+D+ R  V L +D  
Sbjct: 115  SIEDHGYLLSFGVPAVSGFLLHRNYLDGTS-KLRTGQLVQGVVISVDKKRGAVGLKADLG 173

Query: 302  TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 361
             +S  + K+  G++++LL PG MV+ RV+S+L+NG++LSFLTYFTGTVDIFHL++  P  
Sbjct: 174  LISSNMVKEFAGLTVELLTPGAMVNARVRSVLKNGLLLSFLTYFTGTVDIFHLEDPLPGA 233

Query: 362  NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDR 421
            +W   Y++++++ ARIL++DP ++ +GLTLNP LL+N  P   V VGD++  + V RVD 
Sbjct: 234  DWNTKYSENQRLKARILYIDPVAKTIGLTLNPQLLNNVLPSMSVDVGDVFKDAIVRRVDA 293

Query: 422  GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 481
             +G+LL++P+       Y  IS V++E + KLEKKY  G  VR R++G R ++ LA   L
Sbjct: 294  TIGMLLELPTKENVVAGY--ISSVSDEHIAKLEKKYTVGKKVRARVIGHRVMDALAIASL 351

Query: 482  KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
            K S  + L+ +H+DV+P M V G VIAV+ +GA+VQ   GVKALCPL HMSEF+   P  
Sbjct: 352  KESVVDQLLLSHADVQPAMNVTGTVIAVEPYGALVQLAEGVKALCPLQHMSEFQRSNPSS 411

Query: 542  KFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
            KF+VG++L FRVL     +K+IT+THKKTL+ SKL+ + SY  A + L+THG+IT IE  
Sbjct: 412  KFQVGSKLKFRVLSCDHHAKKITLTHKKTLITSKLSPIVSYESAVEGLVTHGFITGIEDI 471

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            GCFV FYN V+G   +S LG++ G +  +++ VGQ +KCR++ S PA+RR++LSF+   +
Sbjct: 472  GCFVSFYNDVKGLVHKSALGIEAGVKAENVFQVGQSIKCRVLRSDPAARRLSLSFITTSS 531

Query: 660  R------VSEDDLVKLGSLVSGVVDVVTPNAVVVYV-IAKGYSKGTIPTEHLADHLEHAT 712
            R       + D+L+  G +V+G V  V  + ++V V    G  KG +   HL+D L H  
Sbjct: 532  RDDASEGAAGDELI--GKVVAGTVHHVNDSVIIVNVSTPTGLVKGYLTFPHLSDTLGHIE 589

Query: 713  VMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
             +KSV K G++FD+LLVLD  +   L++SAK SL+ +A  LPSD S + P SV+ GYV N
Sbjct: 590  QLKSVTKVGFQFDRLLVLDVTDKQKLIVSAKQSLLQAASSLPSDISQLQPQSVIPGYVAN 649

Query: 772  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            I + GCFVRFLGRLTG A   +  D   +D S  + VGQSVR+ +L+V  +TG+ +L LK
Sbjct: 650  ITDRGCFVRFLGRLTGLASVPQVADEFVSDPSNHFSVGQSVRAQVLEVYHDTGKFSLCLK 709

Query: 832  QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
            QS C STD S +Q +FL E+KI          S+L+W +   IG+   G+V E  D+GV+
Sbjct: 710  QSVCFSTDVSLIQGYFLEEDKIV----EASEASDLEWAKTLAIGACTGGEVQEIKDYGVI 765

Query: 892  VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            V    + DV GF+TH+QL G  VE G  +QA +LDV KA+R+VDL+++   + +  + +S
Sbjct: 766  VKLPNYKDVVGFVTHYQL-GTPVEVGDSVQARVLDVVKADRIVDLTVRPELL-QVNKHDS 823

Query: 952  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 1011
             ++ +K K++      L +HQ V+A++E+VK+ YLVLSLPE  ++IG+A+  DYN+++  
Sbjct: 824  TKKKEKNKKRSHPVMALELHQKVSAVIELVKDAYLVLSLPEQGNAIGFAAAGDYNSRRQD 883

Query: 1012 QKQ-FLNGQSVIATVMALPSSSTAGRLLLLLKAIS---ETETSSSKRAKKKSSYDVGSLV 1067
              Q +  GQ V+ATV  L   +   R+LLLL       E +TS++K+ +++    +G++V
Sbjct: 884  SHQRYSPGQRVVATVEHLGDETNGNRMLLLLSNTGDSVEVKTSNTKKPRRELDKLIGAIV 943

Query: 1068 QAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ-----TVTARII 1122
             AEI +            GF  +               N  S+F IGQ      V    +
Sbjct: 944  DAEIID------------GFEEK---------------NPLSSFNIGQKVRCRVVQRVRL 976

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLT-VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
             KS     + S L ELS++PS L+  +  GS    EE  +  GQ +T YV +V ++WA L
Sbjct: 977  QKSPGRKERTSVL-ELSLRPSQLSGYTRPGSLPSLEE--LVPGQCITAYVQEVKDDWAWL 1033

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR------ 1235
            +++ HL+ +LFILDS+ +PSEL++F  RF +G  V+  V S++ EK+ L  + R      
Sbjct: 1034 SVAPHLRGRLFILDSSTDPSELEKFAERFTVGTPVSCCVKSVDYEKRTLDFIRRQPPQLQ 1093

Query: 1236 --------PFQDGISDKTVDISNDNMQTF-IHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
                    P +D  S       N+  Q F I +GD +GGR+ ++  GVGG+ VQI P  +
Sbjct: 1094 EKSLFDVPPMEDADSSS----ENNTKQVFWIQKGDSLGGRVKQVNPGVGGISVQIAPSSF 1149

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN-- 1344
            GRVH T L +    +P S + EGQFV+C VL + +   G   ++L+LR SL GM + N  
Sbjct: 1150 GRVHVTHLSDEWKDNPASAFKEGQFVRCVVLGVEKNPNGKTVIDLTLRKSLGGMVAANLQ 1209

Query: 1345 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1404
            +SD +T           I+ L   +++QG+VK+ + KGCFI L+ ++DA VL  NLS  +
Sbjct: 1210 ASDSAT-TRCVKFQCRTIKPLC--LVLQGFVKSTSKKGCFISLAPQVDAIVLTCNLSKAF 1266

Query: 1405 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI--NNLSNLHVGDIVI 1462
            V+ P + FP GKL+ GR+++++    RVE++LKTS  +    S +      +   G++V 
Sbjct: 1267 VKDPAESFPPGKLIKGRIINIDADLGRVEMSLKTSGQKKELTSTLLGRRFGDFKEGEVVF 1326

Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            G IKR+E +G+F+TIE +++V +CH+SE+++ +  +I+  Y+ G++V+ ++LKVD  K+R
Sbjct: 1327 GTIKRIEKFGIFVTIEQSSVVTMCHMSEVADHYFKDIDKHYKVGDRVRARVLKVDNTKQR 1386

Query: 1523 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGS 1582
            ISLG+K SYF N   ++Q  +EE+  +   E        L+++   + +D   E     S
Sbjct: 1387 ISLGLKESYFSNTETHVQPVTEEDDMKVTNE-----EDELVDDCEESEEDDVDEENLEDS 1441

Query: 1583 LVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEERE 1642
                  E   + PPLEV+L+D      N +  ++   DE     +K N+ AKK+ K++RE
Sbjct: 1442 KGTPSDEGNLNTPPLEVDLEDT-----NVVDDSEKEEDEESEDAKKLNKRAKKRLKQQRE 1496

Query: 1643 QEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1701
             EI AAEER L+ D AP T DEFE LVR+SPNSS VWIKYMAF+L +ADV+KAR+IAERA
Sbjct: 1497 AEISAAEERRLKGDQAPETVDEFEALVRTSPNSSLVWIKYMAFLLQLADVDKARAIAERA 1556

Query: 1702 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1761
            LQTIN REE EKLN+W+AY NLEN YGNPP+EAV+ +F RALQY D KK++ ALLG+YE 
Sbjct: 1557 LQTINYREEMEKLNVWIAYLNLENVYGNPPKEAVLTLFNRALQYNDQKKLYFALLGIYEN 1616

Query: 1762 TEQNK-----LADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRH 1815
              Q K     + D+++  MI+KFK S KVWL+++Q L+++    V    + ++LLSLPR 
Sbjct: 1617 PRQPKGPQYDMFDQMMKTMIRKFKSSAKVWLKQIQSLMERGMGDVAHKTLDQSLLSLPRR 1676

Query: 1816 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875
            KHIK IS+ A+LE+K+G  +R RS+FEGIL  YPKRTDLWS+YLDQEIR+G+V +IR +F
Sbjct: 1677 KHIKVISRAALLEYKSGSVERARSIFEGILRNYPKRTDLWSVYLDQEIRVGEVPVIRAIF 1736

Query: 1876 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            E+   L LPP+KMKFLFKKYL+YEK+ G+EE+IE+VK+KAMEYV + L 
Sbjct: 1737 EKVTCLELPPRKMKFLFKKYLDYEKANGDEEQIEHVKRKAMEYVNNKLG 1785


>gi|302780137|ref|XP_002971843.1| hypothetical protein SELMODRAFT_451253 [Selaginella moellendorffii]
 gi|300160142|gb|EFJ26760.1| hypothetical protein SELMODRAFT_451253 [Selaginella moellendorffii]
          Length = 1807

 Score = 1394 bits (3608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 802/1890 (42%), Positives = 1171/1890 (61%), Gaps = 127/1890 (6%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
            FPRGG  +L+  E  E  AE +AEF      L KK KKKK+K E    E      +L   
Sbjct: 20   FPRGGKQALSAAEIQEARAEAEAEFNRENENLGKKTKKKKRKVEEDPEEE-----TLL-- 72

Query: 114  GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADAL---DPI 170
             +SG   +    +  + + +GM+LWG V+ +N+ DL I LP GL G  +  +A     P 
Sbjct: 73   -LSGNARKSVELLKFRKLCSGMRLWGAVSGINKTDLSISLPNGLHGFVKVDEAFPEYTPD 131

Query: 171  LDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGK---RKIWLSLRLSLLYKGLSL 227
            L ++ +     LL  +FHVGQ VSC +L L++ K +  K   R+  LSL      +G+++
Sbjct: 132  LSDD-KGKCHLLLEELFHVGQYVSCTLLNLEETKGDGQKKQPRRAVLSLLPRHFNEGMTM 190

Query: 228  ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSI 287
            +T+  G ++ + VKSIEDHGY+L FGLP  +GFL   +   + G  ++ G ++Q  V +I
Sbjct: 191  DTIYVGQLMISSVKSIEDHGYVLSFGLPEMSGFLLHKD---HQGEKLRVGEIMQSCVSAI 247

Query: 288  DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
            D+ R V+ L++          K+ + +S+  LVPG +V+  VQ+++ NGV+LSFLTYFTG
Sbjct: 248  DKKRGVINLTT---MQLSSAMKEHENLSLGTLVPGALVNGCVQAVMRNGVLLSFLTYFTG 304

Query: 348  TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV 407
             VDIFHLQ+   + +W  DY + K+  ARI+F+D  ++ + L+L  +L+        +  
Sbjct: 305  IVDIFHLQSVLSSKDWAQDYTEGKRFKARIIFIDARTKRIRLSLRSHLVDAEIVVPSLNR 364

Query: 408  GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
            GD+ + +++ RVD  +GLLL++P+TP     YV  +DV++  V KLEKK+K+G  V+ RI
Sbjct: 365  GDVIEAARIKRVDPAIGLLLELPATP-HVAGYVNHADVSDVNVDKLEKKFKDGQRVKARI 423

Query: 468  LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
            +GFR ++G+AT  LK S  +G+V    D+KPG +V G +  V++ GA+V   GGVK LCP
Sbjct: 424  IGFRLMDGMATLTLKESMVKGVV-NKLDLKPGALVHGVITRVEACGALVSL-GGVKGLCP 481

Query: 528  LPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATD 585
            + HMSE+  +KP  KF+VG ++ FRVL    + K++++T KK+LV SKL ++++Y +A D
Sbjct: 482  VQHMSEYNRLKPSSKFEVGKKMKFRVLQYDHEKKKLSLTFKKSLVSSKLPLITAYEDAVD 541

Query: 586  RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             L+THGWI  I   GCF+ FYN V+G   RSELG+ P     + +HVGQVVKCR++ S  
Sbjct: 542  GLVTHGWIQGISNIGCFMEFYNHVKGLVHRSELGIGPDTPIEAAFHVGQVVKCRVLESDL 601

Query: 646  ASRRINLSFMM--KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            + RR++LSF M  +P        VK GS+VS V+  +  + + + V     S  T+  EH
Sbjct: 602  SKRRLSLSFNMSLRPG-------VKPGSVVSAVITQMGSSQIELQVNDDIAS--TMSYEH 652

Query: 704  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
            L+D   HA  M+S++KPG++FD+LLVL  E S L+L+AKYSLI++A+ LPS    + P +
Sbjct: 653  LSDTPVHAEQMRSLLKPGFKFDRLLVLGWEHSKLVLTAKYSLIDAAESLPSSIHQLSPMA 712

Query: 764  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            V+ GY+  I +  C V FL  +TG  P   A DG   DLS+ ++VGQSVR+ +L+V+SE 
Sbjct: 713  VLPGYISVIHDKYCLVSFLDDVTGLVPIGNASDGYLEDLSQVFFVGQSVRAQVLEVDSEN 772

Query: 824  GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
             +  LSLKQS C STD S +Q +FL EE IA L+  +     L W     IG ++E  V 
Sbjct: 773  EKFVLSLKQSACFSTDVSLIQGYFLEEELIAKLKEKEG----LDWGNKLQIGELVEADVQ 828

Query: 884  ESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFI 943
            E  D+G++++ ++++DV GF TH+Q + + VE G+ ++A ILDV K + +VDLSL+    
Sbjct: 829  EVKDYGIILNLKDNADVVGFATHYQ-SDSPVEVGAAVKACILDVVKTDGIVDLSLQK--- 884

Query: 944  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS 1003
                         K  + ++    L +HQ V  +VE+VK+ YLVLSLP++ +SIG+AS  
Sbjct: 885  -------------KMLKFKKTKAVLQLHQRVEVVVELVKDEYLVLSLPKFGNSIGFASTR 931

Query: 1004 DYNTQKF-PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD 1062
            DYN +   P   +  GQ   AT+ +  S S   R LLLL     T  +  K        D
Sbjct: 932  DYNIRVLRPHDHYSPGQKFSATIYSFGSESVGERTLLLLADTKPTFFTYVKN-------D 984

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            +G++++ +I EI  L + ++ GI   G +HITEV D       N    +  GQTV A+I+
Sbjct: 985  IGAIIEGQIQEISSLHMIIQAGINLRGNVHITEVVDHYEE--GNPLRKYNAGQTVRAKIL 1042

Query: 1123 AK-------SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
            +K        N P +      +LS++PS LT ++    ++  E  V+IGQ V GYV +V 
Sbjct: 1043 SKRKTSRKHGNAPTL------DLSLRPSELTGNDSARSVITFET-VTIGQTVVGYVQEVK 1095

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
              WA L +S HL+ +LFILDS+ +PSEL+ FQ RF +G A   H+ S+N EKK + L LR
Sbjct: 1096 ENWAWLVLSPHLRGRLFILDSSDDPSELERFQERFKVGDAFQCHIRSVNHEKKQVDLSLR 1155

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
            P  +                   +GD++GGRI+++  G GGL VQ+G   +GRVH T L 
Sbjct: 1156 PKDEDFK----------------KGDLLGGRITRVRPGDGGLTVQVGWETFGRVHVTHLG 1199

Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS--SDLSTDVD 1353
            +  + DP S + EG+FV+C+VL++  T++GT  +ELSLR SL G     S  S  + +  
Sbjct: 1200 DTWMDDPASLFTEGKFVRCRVLDLKPTLKGTKALELSLRPSLGGYGGFESLPSYQTLERK 1259

Query: 1354 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1413
            +    +  + +L  +M VQG+VK+VT KGCF++LS  +DA++LL NLS  +V++P + FP
Sbjct: 1260 SNACIVNSVSELQQDMQVQGFVKDVTEKGCFVILSPSVDARILLKNLSSSFVQNPAEMFP 1319

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
             GKLV+GR+LSV PLS  VE++L TS        E ++      GDIV G+I+ +E++G+
Sbjct: 1320 AGKLVSGRILSVRPLSGHVEMSLTTS-------QESSSWKTFCAGDIVSGRIRSIEAFGM 1372

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1533
            F+ + ++++VGLCHVSE+S+D + ++ T+Y+ G++V+VKILKVD E +RISLGMK+S+  
Sbjct: 1373 FVALADSDVVGLCHVSEVSDDFIQDLPTLYKVGQRVQVKILKVDAETKRISLGMKASFLT 1432

Query: 1534 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1593
             D D L+   EE      EE  + N           + + D + ED   L          
Sbjct: 1433 PD-DGLETMDEEP---VAEEPSTAN----------VLMETDEKEEDYLDLDTEATPMATD 1478

Query: 1594 VPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLL 1653
            V PLEVNL++   D+++ +         A+   +K  +  KK+ KE+RE  +RAAEE+ L
Sbjct: 1479 VDPLEVNLEE---DVEDKVPVEDEKPPTAEES-KKKTKKEKKRLKEQREAAVRAAEEKFL 1534

Query: 1654 EKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            +KD  P T D+FERLV +SPNSS+VWIKYMA+ L +AD +KAR++A+RAL+TIN REE E
Sbjct: 1535 QKDQPPETEDDFERLVAASPNSSYVWIKYMAYWLRLADPDKARAVADRALETINYREEME 1594

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            K+NIW AY NLEN Y   P EAV  +F+RA++YCDPKK+HL+LLG+YE T Q+++ D L+
Sbjct: 1595 KMNIWTAYINLENSYAPSPREAVSALFERAMKYCDPKKLHLSLLGVYESTNQHEMTDALM 1654

Query: 1773 YKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
              M +KFK S KVWLR V  LL +   +  +   ++A ++LPRHKHIKFIS+ AILEFK+
Sbjct: 1655 KSMTRKFKTSTKVWLRHVSNLLGRGLSDKARKAFEQACVALPRHKHIKFISRAAILEFKS 1714

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1891
            G  +R R +F+G+L  YPK+TDLWS+YLDQEIRLGD  ++R LFERA  L LP KKMKFL
Sbjct: 1715 GSPERAREIFDGVLRNYPKKTDLWSVYLDQEIRLGDTAIVRNLFERATCLDLPAKKMKFL 1774

Query: 1892 FKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            FKKYL++EK  G+E RIE+VK KAME+VE+
Sbjct: 1775 FKKYLDFEKGQGDETRIEHVKTKAMEFVEA 1804


>gi|6671953|gb|AAF23213.1|AC016795_26 putative pre-rRNA processing protein, 5' partial [Arabidopsis
            thaliana]
          Length = 1111

 Score = 1315 bits (3403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/1149 (60%), Positives = 877/1149 (76%), Gaps = 56/1149 (4%)

Query: 794  AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 853
            A+D  +AD+S++++VGQSVR+NI+DVN E  RITLSLKQS C+S DASF+QE+FL++EKI
Sbjct: 1    AIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKI 60

Query: 854  AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 913
            + LQSS    S+  WVE F IGS+I+G + E ND GVVV+F+  ++V GFI  H + GAT
Sbjct: 61   SDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGAT 120

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            +  GSV+ A +LD+++AERLVDLSL+   ++   +  SN  + KKKRKR  SK+L VHQ 
Sbjct: 121  LVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSN--SSKKKRKRGISKELEVHQR 178

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
            V+A+VEIVKE +LVLS+PE+ ++IGYASVSDYNTQK P KQF  GQSV+A+V A+ +  T
Sbjct: 179  VSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNPLT 238

Query: 1034 AGRLLLLLKAISET-ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH 1092
            +GRLLLLL ++S T ETS SKRAKKKSS +VGS+V AE                      
Sbjct: 239  SGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAE---------------------- 276

Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT-VSEIG 1151
               VND  ++  +  F+ F++GQ+++AR++AK    D+KK+ LWELS+KP+ML   SE  
Sbjct: 277  ---VND--ASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFN 331

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
                 E+ + + GQ V GYVYKVD EW  L +SR++ A++FILD++ +  EL+EF+RRF 
Sbjct: 332  DTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFP 391

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPF-------QDGISDKT----VDISNDNMQTFIHEG 1260
            IGKAV+G+VL+ NKEKK LRLV RP         +G   KT      I  D+   FIHEG
Sbjct: 392  IGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEG 451

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
            DI+GGRISKIL GVGGL VQ+GP+++GRVHFTE+ +  V DPL G+ EGQFVKCKVLEIS
Sbjct: 452  DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKVLEIS 511

Query: 1321 RTVRGTFHVELSLRSSLDGMSSTN--SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1378
             + +GT+ +ELSLR+SLDGMSS +  S DL  + D   K  E+IEDLSP+M VQGYVKN 
Sbjct: 512  SSSKGTWQIELSLRTSLDGMSSADHLSEDLKNN-DNVCKRFERIEDLSPDMGVQGYVKNT 570

Query: 1379 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
             SKGCFI+LSR ++AKV LSNL D +V+ PEKEFP+GKLV GRVL+VEPLSKR+EVTLKT
Sbjct: 571  MSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSKRIEVTLKT 630

Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
             ++    +SE  +L  LHVGD++ G+I+RVE +GLFI I+ T +VGLCH+S+LS+D ++N
Sbjct: 631  VNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMEN 690

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEESDEAIEEVGSY 1557
            ++  Y+AGE V+ KILK+D+EK+RISLGMKSSY  N D D  Q  SE+ +    + +   
Sbjct: 691  VQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPIND- 749

Query: 1558 NRSSLLENSSVAVQDMDMESEDGG-SLVLAQIESRASVPPLEVNLDD-EQPDMDNGISQN 1615
             +S +L     AV D   +   GG SLVLAQ+ESRAS+PPLEV+LDD E+ D D+  SQN
Sbjct: 750  PKSEVL----AAVDDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIEETDFDS--SQN 803

Query: 1616 QGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSS 1675
            Q     A   DEK+ R  K+K+KEERE++I+AAE RLLE  AP   DEFE+LVRSSPNSS
Sbjct: 804  QEKLLGANK-DEKSKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEFEKLVRSSPNSS 862

Query: 1676 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735
            FVWIKYMAFMLS+AD+EKARSIAERAL+TINIREE EKLNIWVAYFNLENE+GNPPEE+V
Sbjct: 863  FVWIKYMAFMLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNLENEHGNPPEESV 922

Query: 1736 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1795
             KVF+RA QYCDPKKV+LALLG+YERTEQ KLAD+LL +MIKKFK SCK+WLR++Q  LK
Sbjct: 923  KKVFERARQYCDPKKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCKIWLRKIQSSLK 982

Query: 1796 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1855
            Q +E +Q+VV RALL LPRHKHIKFISQTAILEFK GVADRGRS+FEG+L EYPKRTDLW
Sbjct: 983  QNEEAIQSVVNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLW 1042

Query: 1856 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915
            S+YLDQEIRLG+ D+IR LFERAISLSLPPKKMKFLFKK+LEYEKSVG+EER+EYVKQ+A
Sbjct: 1043 SVYLDQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRA 1102

Query: 1916 MEYVESTLA 1924
            MEY  STLA
Sbjct: 1103 MEYANSTLA 1111



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 23/189 (12%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D+ P M V+G V    S G  +     V+A   L ++ +  + +P K+F VG  +  RVL
Sbjct: 556 DLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVL 615

Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITH------GWITKIEKHGCFVRF- 605
            V+  SKRI VT K      +       +E+ D    H      G I ++E  G F+   
Sbjct: 616 NVEPLSKRIEVTLKTVNAGGR-----PKSESYDLKKLHVGDMISGRIRRVEPFGLFIDID 670

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL----SFMM----- 656
             G+ G    S+L  D      + Y  G+ V+ +I+      +RI+L    S++M     
Sbjct: 671 QTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDD 730

Query: 657 KPTRVSEDD 665
           K   +SED+
Sbjct: 731 KAQPLSEDN 739



 Score = 44.3 bits (103), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 316 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 375
           I+ L P M V   V++ +  G  +         V + +L +TF     + ++   K V  
Sbjct: 554 IEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTF-VKEPEKEFPVGKLVTG 612

Query: 376 RILFVDPTSRAVGLTLNPYLLHNRAPPSH------VKVGDIYDQSKVVRVDRGLGLLLDI 429
           R+L V+P S+ + +TL       R P S       + VGD+    ++ RV+   GL +DI
Sbjct: 613 RVLNVEPLSKRIEVTLKTVNAGGR-PKSESYDLKKLHVGDMI-SGRIRRVE-PFGLFIDI 669

Query: 430 PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL 468
             T +    +  IS ++++ +  ++ +YK G  VR +IL
Sbjct: 670 DQTGMVGLCH--ISQLSDDRMENVQARYKAGESVRAKIL 706


>gi|302781194|ref|XP_002972371.1| hypothetical protein SELMODRAFT_451250 [Selaginella moellendorffii]
 gi|300159838|gb|EFJ26457.1| hypothetical protein SELMODRAFT_451250 [Selaginella moellendorffii]
          Length = 1634

 Score = 1278 bits (3306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 747/1813 (41%), Positives = 1078/1813 (59%), Gaps = 208/1813 (11%)

Query: 135  MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVS 194
            M+LWG V+ +N+ DL I LP GL G  +  +A         E   D              
Sbjct: 1    MRLWGAVSGINKTDLSISLPNGLHGFVKIDEAFP-------EYTPD-------------- 39

Query: 195  CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 254
                 L DDK                              ++ + VKSIEDHGY+L FGL
Sbjct: 40   -----LSDDK------------------------------LMISSVKSIEDHGYVLSFGL 64

Query: 255  PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 314
            P  +GFL   +   + G  ++ G ++Q  V +ID+ R V+ L++          K+ + +
Sbjct: 65   PEMSGFLLHKD---HQGEKLRVGEIMQSCVSAIDKKRGVINLTT---MQLSSAMKEHENL 118

Query: 315  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
            S+  LVPG +V+  VQ++L NGV+LSFLTYFTG VDIFHLQ+   + +W  DY + K+  
Sbjct: 119  SLGTLVPGALVNGCVQAVLRNGVLLSFLTYFTGIVDIFHLQSVLSSKDWAQDYTEGKRFK 178

Query: 375  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
            ARI+F+D  ++ + L+L  +L+   A    +  GD+ + +++ RVD  +GLLL++P+TP 
Sbjct: 179  ARIIFIDARTKRIRLSLRSHLVD--AEIVSLNRGDVIEAARIKRVDPAIGLLLELPATP- 235

Query: 435  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494
                YV  +DV++ +V KLEKK+K+G  VR RI+GFR ++ +AT  LK            
Sbjct: 236  HVAGYVNHADVSDVKVDKLEKKFKDGQRVRARIIGFRLMDRMATLTLK------------ 283

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
               PG +V G +  V++ GA+V   GGVK LCP+ HMSE+  +KP  KF+VG ++ FRVL
Sbjct: 284  ---PGALVHGVITRVEACGALVSL-GGVKGLCPVQHMSEYNRLKPSSKFEVGKKMKFRVL 339

Query: 555  GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
                + K++++T KK+LV SKL ++++Y +A D L+THGWI  I   GCF+ FYN V+G 
Sbjct: 340  QYDHEKKKLSLTFKKSLVSSKLPLITAYEDAVDGLVTHGWIQGISNIGCFMEFYNHVKGL 399

Query: 613  APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
              RSELG+ P     + +HVGQVVKCR++ S  + RR+ LSF M   R +    VK GS+
Sbjct: 400  VHRSELGIGPDTPIEAAFHVGQVVKCRVLESDLSKRRLRLSFNMS-LRYN----VKPGSV 454

Query: 673  VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN 732
            VS V+  +  + + + V     S  T+  EHL+D             PG           
Sbjct: 455  VSAVITQMGSSQIELQVNDDIAS--TMSYEHLSD------------TPG----------Q 490

Query: 733  ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 792
            E S L+L+AKYSLI++A+ LPS    + P +V+ GY+  I +  C V FL  +TG  P  
Sbjct: 491  EHSKLVLTAKYSLIDAAESLPSSIHQLSPMAVLPGYISVIHDKYCLVSFLDNVTGLVPIG 550

Query: 793  KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 852
             A DG   DLS+ ++VGQSVR+ +L+V+SE  +  LSLKQS C STD S +Q +FL EE 
Sbjct: 551  NASDGYLEDLSQVFFVGQSVRAQVLEVDSENEKFVLSLKQSACFSTDVSLIQGYFLEEEL 610

Query: 853  IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA 912
            IA L+  +     L W     IG ++E  V E  D+G++++ ++++DV GF TH+Q + +
Sbjct: 611  IAKLKEKEG----LDWGNKLQIGELVEADVQEVKDYGIILNLKDNADVVGFATHYQ-SNS 665

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVH 971
             VE G+ ++A ILDV K + +VDLSL                 QK+  K + +K  L +H
Sbjct: 666  PVEVGAAVKACILDVVKTDGIVDLSL-----------------QKRMLKFKKTKAVLQLH 708

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF-PQKQFLNGQSVIATVMALPS 1030
            Q V  +VE+VK+ YLVLSLP++ +SIG+AS  DYN +   P   +  GQ   AT+ +  S
Sbjct: 709  QRVEVVVELVKDEYLVLSLPKFENSIGFASTRDYNIRVLRPHDHYSPGQKFSATIYSFGS 768

Query: 1031 SSTAGRLLLLLKAISETETSSSKR-----AKKKSSYDV-GSLVQA-----EITEIKPLEL 1079
             S   R LLLL     T  +  K       ++   +++ GS +       +I EI  L +
Sbjct: 769  ESVGERTLLLLADTKPTFFTYVKNDIGANHRRPGLFNLSGSFILILTILYQIQEISSLHM 828

Query: 1080 RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK-------SNKPDMKK 1132
             ++ GI   G +HITEV D       N    +  GQTV A+I++K        N P +  
Sbjct: 829  IIQAGISLRGNVHITEVVDQYEE--GNPLRKYNAGQTVRAKILSKRKTSRKHGNAPTL-- 884

Query: 1133 SFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
                +LS++PS LT ++    ++  E  V+IGQ V GYV +V   WA L +S HL+ +LF
Sbjct: 885  ----DLSLRPSELTGNDSARSVITFET-VTIGQTVVGYVQEVKESWAWLVLSPHLRGRLF 939

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
            ILDS+ +PSEL+ FQ RF +G A   H+ S+N EKK + L LRP  +             
Sbjct: 940  ILDSSDDPSELERFQERFKVGDAFQCHIRSVNHEKKQVDLSLRPKDEDFK---------- 989

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
                  +GD++GGRI+++  G GGL VQ+G   +GRVH T L +  + DP S + EG+FV
Sbjct: 990  ------KGDLLGGRITRVRPGDGGLTVQVGWETFGRVHVTHLGDTWMDDPASLFTEGKFV 1043

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS--SDLSTDVDTPGKHLEKIEDLSPNMI 1370
            +C+VL++  T++GT  +ELSLR SL G     S  S  + +  +    +  + +L  +M 
Sbjct: 1044 RCRVLDLKPTLKGTKSLELSLRPSLGGHGGFESLPSYQTLERKSNACIVNSVSELQQDMQ 1103

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            VQG+VK++T KGCF++LS  +DA++LL NLS  +V++P + FP GKLV+GR+LSV PLS 
Sbjct: 1104 VQGFVKDLTEKGCFVILSPSVDARILLKNLSSSFVQNPAEMFPAGKLVSGRILSVRPLSG 1163

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
             VE++L TS        E ++      GDIV G+I+ +E++G+F+ + +++ VGLCHVSE
Sbjct: 1164 HVEMSLTTS-------QESSSWKTFCAGDIVSGRIRSIEAFGMFVALADSDGVGLCHVSE 1216

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +S+D + ++ T+Y+ G++V+VKILKVD E +RISLGMK+SY   D D L+   EE     
Sbjct: 1217 VSDDFIQDLPTLYKVGQRVQVKILKVDAETKRISLGMKASYLTPD-DGLETMDEEP---V 1272

Query: 1551 IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDN 1610
             EE  + N           + + D + ED   L          V PLEVNL++   D+++
Sbjct: 1273 AEEPSTAN----------VLMETDEKEEDYLDLDTEATPMATDVDPLEVNLEE---DVED 1319

Query: 1611 GISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVR 1669
             +         A+   +K  +  KK+ KE+RE  +RAAEE+ L+KD  P T D+FERLV 
Sbjct: 1320 KVPVEDEKPLTAEES-KKKTKKEKKRLKEQREAAVRAAEEKFLQKDQPPETEDDFERLVA 1378

Query: 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1729
            +SPNSS+VWIKYMA+ L +AD +KAR++A+RAL+TIN REE EK+NIW AY NLEN Y  
Sbjct: 1379 ASPNSSYVWIKYMAYWLRLADPDKARAVADRALETINYREEMEKMNIWTAYINLENSYAP 1438

Query: 1730 PPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR 1789
             P EAV  +F+RA++YCDPKK+HL+LLG+YE T Q+++ D L+  M +KFK S KVWLR 
Sbjct: 1439 SPREAVSALFERAMKYCDPKKLHLSLLGVYESTNQHEMTDALMKSMTRKFKTSTKVWLRH 1498

Query: 1790 VQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1848
            V  LL +   +  +   ++A ++LPRHKHIKFIS+ AILEFK+G  +R R +F+G+L  Y
Sbjct: 1499 VSNLLGRGLSDKARKAFEQACVALPRHKHIKFISRAAILEFKSGSPERAREIFDGVLRNY 1558

Query: 1849 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908
            PK+TDLWS+YLDQEIRLGD  ++R LFERA  L LP KKMKFLFKKYL++EK  G+E RI
Sbjct: 1559 PKKTDLWSVYLDQEIRLGDTAIVRNLFERATCLDLPAKKMKFLFKKYLDFEKGQGDETRI 1618

Query: 1909 EYVKQKAMEYVES 1921
            E+VK KAME+VE+
Sbjct: 1619 EHVKTKAMEFVEA 1631


>gi|414883924|tpg|DAA59938.1| TPA: hypothetical protein ZEAMMB73_957052, partial [Zea mays]
          Length = 1207

 Score = 1202 bits (3109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1151 (54%), Positives = 825/1151 (71%), Gaps = 83/1151 (7%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
            FPRGG   L++ E  E  AE + +FE        K K+K+   E       DDLG LFG 
Sbjct: 67   FPRGGHSLLSKDEMAEARAEAEQDFE--REAKKGKGKRKRSGGESSGFGVDDDLGILFGG 124

Query: 114  GISGKLPRYANKIT---------------------------------------------- 127
              +GKLPR+AN+IT                                              
Sbjct: 125  ATTGKLPRFANRITVKVGDSEIKITAAEASRARSKIEWSSSGIEGLFWTVSVARIWYKLC 184

Query: 128  ------LKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN 181
                  +KNIS  MKLWGVV EVN+KD+V+ LPGG+RG  R+ D  D  L    + + +N
Sbjct: 185  TSMHIKIKNISPNMKLWGVVIEVNQKDIVLSLPGGIRGFVRSEDVCDIALQENRKDSGNN 244

Query: 182  LLPTIFHVGQLVSCIVLQLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAY 239
            L   + HVGQLV CIVL++DDD +E GK  +++WLSLRLSLLYKGL+L+ +QEGMVLTA 
Sbjct: 245  LCAEVVHVGQLVPCIVLRVDDDSRE-GKVNKRVWLSLRLSLLYKGLALDGLQEGMVLTAQ 303

Query: 240  VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 299
            VKSIEDHGYILHFG+ SF+GF+ +++  +   +  +   L+Q VV++ID+TR +V+LSSD
Sbjct: 304  VKSIEDHGYILHFGVSSFSGFMQKDDKED---VKTERRQLMQCVVKAIDKTRAIVHLSSD 360

Query: 300  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
             D +SK   KDLKG+SID L+PGMMV+ RV S LENG+MLSFLTYF+GTVDIF+L N+FP
Sbjct: 361  EDLLSKSTIKDLKGLSIDHLIPGMMVNARVHSFLENGLMLSFLTYFSGTVDIFNLLNSFP 420

Query: 360  TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRV 419
            + NWK+DY+++KKVNARILFVDP++RAVGLTLN +LLH   PP ++K GDIYD+SKV+RV
Sbjct: 421  SGNWKDDYSKNKKVNARILFVDPSTRAVGLTLNKHLLHLEVPPINLKAGDIYDKSKVLRV 480

Query: 420  DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 479
            D+  GL L+IPS P  +P +++I DV++++ + LEK +KEGS +RVRILG R+LEG+A G
Sbjct: 481  DKKAGLFLEIPS-PTPSPGFISIRDVSDKDAKNLEK-FKEGSSLRVRILGVRNLEGVAIG 538

Query: 480  ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE-IVK 538
             +K SAFEG VFTH DVKPGM+V+ KV  V+ FGAIVQF  GVKALCPLPHMSE E +VK
Sbjct: 539  TIKDSAFEGSVFTHDDVKPGMLVRAKVATVEPFGAIVQFSSGVKALCPLPHMSELEHVVK 598

Query: 539  PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            P KKFKVGAEL+FRVLG KSKR+TVT+KK+LVKSKL +LSSYA+A   L+THGWIT IEK
Sbjct: 599  PPKKFKVGAELLFRVLGCKSKRVTVTYKKSLVKSKLDVLSSYADAKIGLVTHGWITHIEK 658

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
            HGCFV+FYNGVQGF  RS+LGL+ G E  ++YHVGQVVKCRI++ IPASR++N+SF++  
Sbjct: 659  HGCFVKFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVVKCRIINVIPASRKLNVSFVISH 718

Query: 659  TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI 718
             R++  D  KLGS+VSGVV+ +TP AVVV V   G+SKGTI  EHLADH   A  +K+V+
Sbjct: 719  NRIAPIDTPKLGSIVSGVVERLTPAAVVVSV--NGFSKGTILNEHLADHHGQAAQLKNVL 776

Query: 719  KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            KPG+EF+QLLVLD E  NL+LSAK+SLIN A  +PS+ S +HP  VVHGY+CNIIE GCF
Sbjct: 777  KPGHEFNQLLVLDTEGQNLVLSAKHSLINCANDIPSEISQMHPGVVVHGYICNIIEAGCF 836

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            VRFLG LTGF+P+ KAVD     LS  +YVGQSVRS+IL VN+ET R+ L+L+QS CSS 
Sbjct: 837  VRFLGHLTGFSPKDKAVDRWIEKLSDAFYVGQSVRSHILSVNAETARVKLALQQSMCSSM 896

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
            D+SF+Q +FLL++KIA L+ S ++     W   F IGS++E +V    ++G++++F++H 
Sbjct: 897  DSSFIQGYFLLDQKIAALKYSSND-----WARHFGIGSLVEAEVGAIEEYGIILNFKDHL 951

Query: 899  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
            D  G I HHQL G++VE GS ++  +LD++    +V+LS+K   ID  R        +KK
Sbjct: 952  DTVGLIEHHQLGGSSVEVGSSVKGLVLDLSDG--VVNLSVKPELIDSVRIV-----GKKK 1004

Query: 959  KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNG 1018
            KR+R    DL +H+ VNA+VEI+K++Y+VLS+PEYN++IG++ + DYN+Q  P   + NG
Sbjct: 1005 KRQRAVVADLELHEEVNAVVEIIKDSYMVLSIPEYNYAIGFSPLMDYNSQLLPHHHYDNG 1064

Query: 1019 QSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAKKKSSYDVGSLVQAEITEIKPL 1077
            Q +   V  +PSS ++GRL+LL KA ++ +  S SKRAKKKS Y +GSLV+AEI +IKPL
Sbjct: 1065 QRITVVVGNIPSSDSSGRLILLPKASAQYSSLSDSKRAKKKSGYKIGSLVEAEIIDIKPL 1124

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK--KSFL 1135
            EL LKFG   HGRIHITE+ ++ S   E+ FS  +IGQ +TARI++++ +P  K  K F 
Sbjct: 1125 ELLLKFGGNLHGRIHITEILEEDS--AEHPFSELRIGQKLTARIVSEA-EPSGKSGKKFK 1181

Query: 1136 WELSIKPSMLT 1146
            WELSI+P ++ 
Sbjct: 1182 WELSIRPCIVN 1192



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 171/714 (23%), Positives = 292/714 (40%), Gaps = 117/714 (16%)

Query: 665  DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
            D VK G LV   V  V P   +V   + G  K   P  H+++ LEH      V+KP  +F
Sbjct: 553  DDVKPGMLVRAKVATVEPFGAIVQ-FSSGV-KALCPLPHMSE-LEH------VVKPPKKF 603

Query: 725  D---QLL--VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
                +LL  VL  +S  + ++ K SL+ S   + S  +      V HG++ +I + GCFV
Sbjct: 604  KVGAELLFRVLGCKSKRVTVTYKKSLVKSKLDVLSSYADAKIGLVTHGWITHIEKHGCFV 663

Query: 780  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            +F   + GF  RS        +    Y+VGQ V+  I++V   + ++            +
Sbjct: 664  KFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVVKCRIINVIPASRKL------------N 711

Query: 840  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             SF+  H     +IA + + K             +GS++ G V       VVVS    S 
Sbjct: 712  VSFVISH----NRIAPIDTPK-------------LGSIVSGVVERLTPAAVVVSVNGFSK 754

Query: 900  VYGFITHHQLA---GATVESGSVI-------QAAILDVAKAERLVDLSLKTVFIDRFREA 949
              G I +  LA   G   +  +V+       Q  +LD  + + LV LS K   I+   + 
Sbjct: 755  --GTILNEHLADHHGQAAQLKNVLKPGHEFNQLLVLD-TEGQNLV-LSAKHSLINCANDI 810

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK 1009
             S           +    + VH     I  I++    V  L    H  G+ S  D    +
Sbjct: 811  PSEIS--------QMHPGVVVH---GYICNIIEAGCFVRFL---GHLTGF-SPKDKAVDR 855

Query: 1010 FPQK---QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK---------RAKK 1057
            + +K    F  GQSV + ++++ + +   +L L     S  ++S  +          A K
Sbjct: 856  WIEKLSDAFYVGQSVRSHILSVNAETARVKLALQQSMCSSMDSSFIQGYFLLDQKIAALK 915

Query: 1058 KSSYD------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF 1111
             SS D      +GSLV+AE+  I+      ++GI  + + H+  V   + + +    S+ 
Sbjct: 916  YSSNDWARHFGIGSLVEAEVGAIE------EYGIILNFKDHLDTVGLIEHHQLGG--SSV 967

Query: 1112 KIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML-TVSEIGSKLLFEEC---DVSIGQRV 1167
            ++G +V   ++  S+        +  LS+KP ++ +V  +G K   +     D+ + + V
Sbjct: 968  EVGSSVKGLVLDLSDG-------VVNLSVKPELIDSVRIVGKKKKRQRAVVADLELHEEV 1020

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
               V  + + + +L+I  +  A  F     Y    L      +  G+ +T  V +I    
Sbjct: 1021 NAVVEIIKDSYMVLSIPEYNYAIGFSPLMDYNSQLLP--HHHYDNGQRITVVVGNIPSSD 1078

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
               RL+L P          D      ++    G +V   I  I      L+++ G +L+G
Sbjct: 1079 SSGRLILLPKASAQYSSLSDSKRAKKKSGYKIGSLVEAEIIDIKPL--ELLLKFGGNLHG 1136

Query: 1288 RVHFTE-LKNICVSDPLSGYDEGQFVKCKVL---EISRTVRGTFHVELSLRSSL 1337
            R+H TE L+      P S    GQ +  +++   E S      F  ELS+R  +
Sbjct: 1137 RIHITEILEEDSAEHPFSELRIGQKLTARIVSEAEPSGKSGKKFKWELSIRPCI 1190



 Score = 47.8 bits (112), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 19/156 (12%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
            +I  + P ++V GY+ N+   GCF+     L          D ++E     F +G+ V  
Sbjct: 813  EISQMHPGVVVHGYICNIIEAGCFVRFLGHLTGFSPKDKAVDRWIEKLSDAFYVGQSVRS 872

Query: 1421 RVLSVEPLSKRVEVTLKTS----------------DSRTASQSEINNLSNLH--VGDIVI 1462
             +LSV   + RV++ L+ S                D + A+    +N    H  +G +V 
Sbjct: 873  HILSVNAETARVKLALQQSMCSSMDSSFIQGYFLLDQKIAALKYSSNDWARHFGIGSLVE 932

Query: 1463 GQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVD 1497
             ++  +E YG+ +   ++ + VGL    +L    V+
Sbjct: 933  AEVGAIEEYGIILNFKDHLDTVGLIEHHQLGGSSVE 968



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 78/174 (44%), Gaps = 10/174 (5%)

Query: 1359 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1418
            L    D    ++  G++ ++   GCF+     +   V  S+L        E  + +G++V
Sbjct: 637  LSSYADAKIGLVTHGWITHIEKHGCFVKFYNGVQGFVSRSDLGLEAGTEAENVYHVGQVV 696

Query: 1419 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1478
              R+++V P S+++ V+   S +R A       +    +G IV G ++R+    + +++ 
Sbjct: 697  KCRIINVIPASRKLNVSFVISHNRIAP------IDTPKLGSIVSGVVERLTPAAVVVSV- 749

Query: 1479 NTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            N    G      L++ H     ++ + + G +   ++L +D E + + L  K S
Sbjct: 750  NGFSKGTILNEHLADHHGQAAQLKNVLKPGHEFN-QLLVLDTEGQNLVLSAKHS 802



 Score = 40.4 bits (93), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 24/211 (11%)

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
            Q ++C V  I +T R   H    L S  D +S +   DL        K L  I+ L P M
Sbjct: 339  QLMQCVVKAIDKT-RAIVH----LSSDEDLLSKSTIKDL--------KGLS-IDHLIPGM 384

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-FPIGKLVAGRVLSVEPL 1428
            +V   V +    G  +         V + NL + +     K+ +   K V  R+L V+P 
Sbjct: 385  MVNARVHSFLENGLMLSFLTYFSGTVDIFNLLNSFPSGNWKDDYSKNKKVNARILFVDPS 444

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV-IGQIKRVE-SYGLFITIEN-TNLVGL 1485
            ++ V +TL    ++     E+  + NL  GDI    ++ RV+   GLF+ I + T   G 
Sbjct: 445  TRAVGLTL----NKHLLHLEVPPI-NLKAGDIYDKSKVLRVDKKAGLFLEIPSPTPSPGF 499

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
              + ++S+    N+E  ++ G  ++V+IL V
Sbjct: 500  ISIRDVSDKDAKNLEK-FKEGSSLRVRILGV 529


>gi|145350993|ref|XP_001419873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580106|gb|ABO98166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1869

 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1850 (34%), Positives = 1045/1850 (56%), Gaps = 133/1850 (7%)

Query: 116  SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEI 175
            SG   +Y   +  K++  G KL G+++EV  + LV+ LP GLRG    A+      +++ 
Sbjct: 98   SGGGAKYVETLKYKSLRPGAKLLGIISEVTARGLVMSLPDGLRGTVARAEVAGTSDEDDD 157

Query: 176  EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 235
            + + +  L  ++  GQ++ C V+ L+  K + G ++I LSLRL  + +GL+ E++ EG V
Sbjct: 158  DDDAEASLELLYEPGQVLRCAVVSLE--KGKTGGKRIELSLRLEKVCEGLTKESLTEGSV 215

Query: 236  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVY 295
              A V+S+EDHGYIL FG+   +GFLP+ N+A + G +++ G ++  V+    +  K  +
Sbjct: 216  APAVVQSVEDHGYILSFGIADTSGFLPKKNVASDLG-EIRKGRIIDVVITGAPKGNKGYF 274

Query: 296  -LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
             ++SD   +   V  +    ++D L+PGM+V++R++ IL +GV +SF+TYF+GTVD FH 
Sbjct: 275  TVTSDQKRIKTSVAHETSATNVDTLLPGMLVNSRIKQILSDGVSVSFMTYFSGTVDCFHT 334

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
                 +    + +   +++ ARI+FVD  S+ V LTL P+LL + A     K+G  +  +
Sbjct: 335  GALATSKGVSSAFKVGQRMRARIIFVDSASKRVSLTLLPHLL-DYASIELPKLGKTFQTA 393

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            K+ RVD G G+ L I         Y  +S +++E V K+EKK+K G  V VR++G R L+
Sbjct: 394  KIERVDAGQGVALSISDGKNDIAGYAHVSQLSDERVEKVEKKFKIGRSVSVRVIGHRLLD 453

Query: 475  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
            G+ +  LK+S      F+  ++ PGM+V G+V+AV+ +GAIV+   G+KALCP  H+S+ 
Sbjct: 454  GVVSVSLKSSVMAQPFFSLDELTPGMLVNGEVLAVEHYGAIVKLAEGIKALCPPLHISDI 513

Query: 535  EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
                   K   GA+L FRVL V   S+R TV+HK+TL+KS+L ++    +A    ITHG 
Sbjct: 514  VGRTTSAKVAPGAKLKFRVLNVDRNSRRATVSHKRTLIKSELPVIGQIEDAVPGSITHGV 573

Query: 593  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
            +T + ++G FV  Y  ++G A  ++LGL    +PS  + VGQVV+ +++S+   S R+ L
Sbjct: 574  VTGVNEYGVFVSLYGDLKGLAGLNDLGLLRDQKPSDAFGVGQVVRVQVVSA-DTSGRLRL 632

Query: 653  SFM-------------------MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
            S                     +KP  V E  +V    + SG     T N  VV+ + +G
Sbjct: 633  SLASGDADGNSASMIINASADALKPGHVVEKAVVT--HVASG-----TGNVEVVFSMEEG 685

Query: 694  YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-- 751
               G +P  HL+DH   A  + +V+ PG E   L+VL+ +S+  ++S K SL+ S+++  
Sbjct: 686  NIPGVVPLAHLSDHPLTAQGLSAVLNPGDEIGPLVVLEGKSTRAVMSRKLSLVESSREGK 745

Query: 752  LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 811
            LP+ A      +V  GYV +    G FVRFLGRLTG AP S+  DG   D+ + + VG++
Sbjct: 746  LPATAKEATLGAVFPGYVASATAAGVFVRFLGRLTGLAPPSQLTDGTTGDVHEMFPVGKT 805

Query: 812  VRSNIL--DVNSETGRITLSLKQSCCSS--TDA----SFMQEHFLLEEKIAMLQSSKHNG 863
            V + IL  D ++ T R++LSLK S  SS  +DA    SF Q+   L+++      ++  G
Sbjct: 806  VNALILSVDTSTPTPRLSLSLKVSATSSPLSDAPLVRSFFQDIEFLDDRDV---GAEDVG 862

Query: 864  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL-AGATVESGSVIQA 922
               +  +    G+ ++  V+E+ D+GV++     S+V G +T HQ+    T  +G  ++ 
Sbjct: 863  ISPETAKSLKPGTWMDVSVNETKDYGVLMDVPIDSNVVGLVTPHQIPVDTTFTAGDEVKG 922

Query: 923  AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 982
             +LDV++ E +VD+ ++    D   +   N+ +  K  K+     L V   V+A VE++K
Sbjct: 923  YVLDVSRREGVVDIGMR----DGLGKFKRNKTSSGKSLKK-----LKVGDQVSAEVELIK 973

Query: 983  ENYLVLSLPEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL 1041
              Y+ LSLPE+N  IG+A V   N + +   ++F   Q V A +  LP     GRLLL +
Sbjct: 974  AEYVALSLPEHNGLIGFAPVHHLNLRYEDASERFTPTQCVKAVIAQLPEGEM-GRLLLTV 1032

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
              +++  T+S + A        G+LV+  ++E++ L+  +       GR++I+E +  + 
Sbjct: 1033 P-VTKGTTASGRIA-------AGTLVKGVVSEVQNLQALVALPNNARGRLYISEFSPGED 1084

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV 1161
              +E++     +G TV A ++  +      +  L +LS+            K  F   DV
Sbjct: 1085 TPLESI----SVGSTVEATVMGLAGD----RGGLLDLSMH----------RKSAFVLEDV 1126

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGKAVTGHV 1220
            S+G  V+ YV  V ++   +TI+  + + +  ++++ + SEL  +   RF +G+ V+  +
Sbjct: 1127 SVGDDVSAYVVSVTDDGIKVTIAPGITSFIPKIETSDKSSELAMKLSSRFTVGERVSAII 1186

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
            + +   KK + L LR   DG S            + +  G  V G I++++  VG L+VQ
Sbjct: 1187 VGVKATKKRVDLSLR--TDGASG----------SSRVCVGAKVQGIITRVVENVG-LMVQ 1233

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1340
            +G H  GRVH T++ +    DP + Y+ GQ V+ +VL  S        ++LS+R+S    
Sbjct: 1234 LGSHSVGRVHLTDMADEYDDDPCAKYEAGQVVQVRVLNAS----SNGELDLSMRASRLSS 1289

Query: 1341 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1400
              T+ +D           +  I +L P   V+GYVK  + KGCFI LSR +DA   LSNL
Sbjct: 1290 KRTSPTD---------PEITDISNLVPGQRVKGYVKATSKKGCFIALSRGIDAMCKLSNL 1340

Query: 1401 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1460
            +D ++  P K FP GKLV GR++S +    RVE+  + +D+   +     ++S + VGD+
Sbjct: 1341 ADSFIADPAKTFPPGKLVEGRIVSADAAKGRVELAFRETDATQGNA----DVSTVKVGDV 1396

Query: 1461 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKE 1519
            +IG ++RV+ YG+F++++ T L GLCH+S  ++  + D++ +  R GE+V+ K+L+++ E
Sbjct: 1397 LIGTVRRVQPYGVFVSLDGTKLSGLCHISMFADARISDDLASHVRQGERVRTKVLEINTE 1456

Query: 1520 KRRISLGMKSSYFKNDADNL-----QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMD 1574
              +ISLG+K+S F++D  +       +++    D  ++   S    S ++      +D  
Sbjct: 1457 TNKISLGIKASLFEDDDGDGDEEMADVNTAHTFDPLMDSSESGESDSDID------EDGP 1510

Query: 1575 MESEDGGSLVLAQIESRASVPPL--EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRH 1632
            + +++G S       S +   P+  ++  D +    D  ++         K  D+  ++ 
Sbjct: 1511 LHADEGESTDEESDPSDSEDAPIGNDLGFDWDAEKTDASMTDVADEKAGKKGADKAPSKR 1570

Query: 1633 AKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADV 1691
             KK+ KE RE EI   E+ + + D  P +  EFE+L+ +SP SSF+W++YMAF +S    
Sbjct: 1571 EKKRLKEARELEILQKEQEMRDGDHIPESAMEFEKLLIASPRSSFLWVRYMAFHVSCGAY 1630

Query: 1692 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-PEEAVVKVFQRALQYCDPKK 1750
            ++A+ +AERAL  I   EE E++N+W AY NLEN+YG P PEEAV K+F RA+Q  D K 
Sbjct: 1631 DEAKEVAERALGAIPASEEAERMNVWAAYLNLENKYGTPSPEEAVKKLFTRAVQIADAKH 1690

Query: 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR-LLKQQQEGVQAVVQRAL 1809
            +HL L+ +YER  Q    +E L K  KKF +S K+WL  ++  +LK   E  + ++ RA 
Sbjct: 1691 MHLTLVSMYERNAQEDALEESLKKAAKKFSYSAKIWLAYIRSAVLKNDSEKARKLLDRAT 1750

Query: 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1869
             SLP+HKHIK +++TA+LE K G  +RGR+MFEGIL  YP+RTD+WS+Y+DQEI+ GD+ 
Sbjct: 1751 QSLPKHKHIKILTRTALLEMKEGNPERGRTMFEGILRNYPRRTDIWSVYIDQEIKQGDIQ 1810

Query: 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
             IR LFERA  L L  K MKFLFK+YL++E+S G++ERI +VKQ+AMEYV
Sbjct: 1811 RIRALFERATHLDLNAKSMKFLFKRYLDFERSEGDDERIAHVKQRAMEYV 1860


>gi|384249900|gb|EIE23380.1| hypothetical protein COCSUDRAFT_28807 [Coccomyxa subellipsoidea
            C-169]
          Length = 1757

 Score =  993 bits (2566), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/1849 (34%), Positives = 1018/1849 (55%), Gaps = 144/1849 (7%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            + ++++S G K+WG VAE+  ++L+I LP GL+G   AA+ + P+      A +   L +
Sbjct: 1    MLVQSLSKGAKIWGTVAEITHRELIISLPHGLKGHVPAAEVMHPL------AADVPSLSS 54

Query: 186  IFHVGQLVSCIVLQLDDDKKEI-----GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
            +F  GQLV C ++ L D    +     G+++I LSL ++ +  G+    +  GM L A V
Sbjct: 55   LFRAGQLVQCSIVDLQDGDSGVAGGKAGRKRIVLSLHVAKVNAGIGPAALIAGMQLPACV 114

Query: 241  KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT------RKVV 294
            +S+EDHG++L  G+   T FL R N  +    + +P  LL G V  +  T      R +V
Sbjct: 115  RSVEDHGFLLTTGVKGVTAFLERTNWLKACSGEARP--LLPGAVLPVTVTAAARPGRPLV 172

Query: 295  YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
            ++S+DP +++K   K+ +G++I  L+PGM+V+ RV+++L +G+++SFLTYF GTVD FHL
Sbjct: 173  HVSADPKSLAKGAVKEWEGLTIGSLLPGMLVNARVRNVLSDGLLVSFLTYFNGTVDCFHL 232

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQS 414
                P  +W+  Y    +V ARI++VDP S+ V L+L P+L+   A P+   +  +++ S
Sbjct: 233  SQQPPPADWQKGYEAGARVRARIIYVDPVSKRVSLSLLPHLVAGSASPALPPINTLFEHS 292

Query: 415  KVVRVDRGLGLLL------DIPSTPVSTPA-YVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
             V RVD  LGLLL      D P+   + PA Y  IS V+E  + KL+K YK G  V  R+
Sbjct: 293  IVRRVDNALGLLLELRSEDDAPAEQPNAPAGYAHISAVSESRIEKLDKVYKVGKKVAARV 352

Query: 468  LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
            +G R ++GLA   L+ +A      +++DV PG +V G V  V+ FG  V+   G+KAL P
Sbjct: 353  IGARPMDGLAVCTLREAAVRAGTISYADVAPGSIVSGTVENVEDFGLFVKLAPGIKALVP 412

Query: 528  LPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATD 585
              HMS+    K   KFK G ++  RVL   V +++IT++ KK LV  KL   +S+ EA  
Sbjct: 413  TVHMSDSGSEKARAKFKEGQKVSGRVLEVDVAARKITLSLKKLLVGEKLPPFASWQEAAQ 472

Query: 586  R-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
                 HG++T ++++G FV F NGV+G AP  +LGL+P  +P+  + +G+ VK R++S  
Sbjct: 473  PGARAHGFVTGVQEYGVFVSFCNGVRGLAPTQQLGLEPNQDPAKQFPIGKTVKARVVSVD 532

Query: 645  PASRRINLSFMMKP--TRVSEDDLVKLGSLVSGVVDVV---TPNAVVVYVIAKGYSKGTI 699
               RR+ LSF  K      +      +G L  G +       P A  V  +      G +
Sbjct: 533  EERRRLRLSFAPKTAADAAAAAGADPMGGLQPGTILRAGEGVPGASPVLAL------GRL 586

Query: 700  PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQQLPSDAS 757
               HLADH      +   +  G E   LL+L+   ++  L ++ K SL+ +A QLP+   
Sbjct: 587  DAAHLADHPAAEAALSEALVDGSELGPLLILERLEKAGMLRVTRKASLLAAAAQLPAAIE 646

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             +   ++  GYV N+     FVRFLG LTG A  ++  D   +D S+ +  GQSVR+ ++
Sbjct: 647  DVKEGTLASGYVANVTADAVFVRFLGSLTGRAGLAQLADQFVSDPSRHFTEGQSVRAAVV 706

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
             V+    R T++LK S   + DA++ +  F   E    +++++ +  ++ W E   IG  
Sbjct: 707  TVDLAKQRFTVALKHSLTGAPDAAYARFLFADLETAERIRAAEPSTEQVNWAE-LAIGGR 765

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
              G VH+  ++GVV   + H+DV       Q+ G    +G+ I+  ILDV K + +VDL+
Sbjct: 766  AAGAVHDVKEYGVVCDLDAHADVVALAAPEQVEGEAT-TGTRIKGRILDVNKKDGIVDLT 824

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
            LK   +              K    EA   +G    V A+VE+VK++YLVLSLP    +I
Sbjct: 825  LKASLV--AGAPKKATGKAAKAALPEAVCQVGAK--VEAVVELVKDDYLVLSLPAQQQTI 880

Query: 998  GYASVSDYN--TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS-SKR 1054
             +A+ SD+N  ++    +QF+ GQ + A V+   S    GR ++ +  +S++  +   KR
Sbjct: 881  AFAATSDFNLGSRAHNSRQFIPGQKISAVVVEQASPENGGRTIVHVPLVSDSPAAPREKR 940

Query: 1055 AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 1114
             +K +    G++V A++T                  +H T         VE      + G
Sbjct: 941  ERKPAKIPPGTIVAAKVTN-----------------MHATHAG------VE-----LESG 972

Query: 1115 QTVTARIIAKSN--KPDMKKSFLWELSIKPSMLTVSEIGSKL-LFEECDVSIGQRVTGYV 1171
              + + ++A +N  + + +   L ELS++PS++   +   K  +    D+  GQ V GYV
Sbjct: 973  AHILSILLAYANLHRFEGRNHGLLELSLRPSLVAAEKGAPKPGMLSVDDLQEGQTVRGYV 1032

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
             +   + A L +S  L+ +L  LDSA + ++L  F  RF +G+++   V+ ++K++  + 
Sbjct: 1033 QETAPDCAWLVLSPALRGRLHALDSADDVTQLAAFGGRFTVGQSLRCRVVQVDKKRGQVD 1092

Query: 1232 LVLR------PFQDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            L LR        Q  ++ +T     +  N +  + E  I   +     SG  G+ V +  
Sbjct: 1093 LSLREPGAASAKQWHVTQRTPTPICAFANARCTMVEWQISSDKAIVACSGA-GVRVHLAG 1151

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS-------RTVRGTFHVELSLRSS 1336
            H  G V  T++ +  V + +     G FV+C+VL  +       RT  GT      LR  
Sbjct: 1152 HASGHVAMTDVHDGFVENAIESLKAGDFVRCRVLGRAEDKGAEKRTKEGTEIKRAGLREP 1211

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
                     +  ++  ++  +  +++  LS    V+GYVK V+S G F+ L+R ++A+V 
Sbjct: 1212 FASNRCEQENFPASMSNSGTQGFDEL--LSFGQQVRGYVKGVSSAGAFVALARDMEARVK 1269

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1456
            L+NL+DGYVE P+  FP GKLV GR+L+ E    R+E++LK+    T        L +  
Sbjct: 1270 LNNLADGYVEDPKTAFPQGKLVRGRILATE--HNRIELSLKSKGWAT--------LEDFT 1319

Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
             G +V G+++R E +G+FI I+++ + G+ H+SE++++ VD++ ++++ G+ V+ K+L V
Sbjct: 1320 EGQVVRGRVRRAEKFGVFIRIDDSAVTGMAHISEVADERVDDLPSMFKPGQGVRAKVLSV 1379

Query: 1517 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDME 1576
            D E +R+SLG+K SYF +D ++ +   + + +E                           
Sbjct: 1380 DAETQRLSLGLKPSYFGDDDEDGEEPDQAQEEEG------------------------TP 1415

Query: 1577 SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKK 1636
            +ED    + A++        LE  +DD   + D+  +  Q    +    D    +  +++
Sbjct: 1416 AEDDNDDIDAEV--------LEA-MDDSSEEEDDWRAGAQILNGDDVAADRALTKRQRRR 1466

Query: 1637 EKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1696
            +K E E+ +RAAE R L++  P +  +FERLV  SP+SS+VWI+YMAF + + +++KAR 
Sbjct: 1467 QKAEEEERVRAAELRQLQQPPPESEVDFERLVLESPSSSYVWIRYMAFHMGVGEIDKARG 1526

Query: 1697 IAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL 1756
            +A+RAL+TIN REE EKLN+WVA+ NLEN +G+PP+EA++K+FQ+AL + D KK++LALL
Sbjct: 1527 VADRALKTINFREEREKLNVWVAWLNLENLHGSPPDEALMKLFQKALPHTDQKKLYLALL 1586

Query: 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRV-QRLLKQQQEGVQAVVQRALLSLPRH 1815
             + ER+ +++L  + L  M +K+  S KVWLR     L +      +  + RA+ +LP  
Sbjct: 1587 TILERSARDELTQQTLRTMTRKYWASAKVWLRAYGYDLGRNDGNAARRALDRAIGALPAR 1646

Query: 1816 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875
            KHIK +SQ A++EFK G  +RGR +FEGIL  YPKR DLWSIYLDQEIR GD    R LF
Sbjct: 1647 KHIKVLSQAALMEFKEGDPERGRGVFEGILRNYPKRLDLWSIYLDQEIRAGDRQRARSLF 1706

Query: 1876 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            ERA  LSLPPKKMKFLFK++L++EK+ G+   +E+VKQ A EYVE+ LA
Sbjct: 1707 ERATHLSLPPKKMKFLFKRFLDFEKTHGDAAGVEHVKQAAKEYVEANLA 1755


>gi|255581556|ref|XP_002531583.1| programmed cell death protein, putative [Ricinus communis]
 gi|223528779|gb|EEF30786.1| programmed cell death protein, putative [Ricinus communis]
          Length = 607

 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/620 (74%), Positives = 513/620 (82%), Gaps = 21/620 (3%)

Query: 1   MAASSRKSQK----KSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPR 56
           MAA S+  +K    KS   G KFNKASK  FK  KK  NDAV  + +A   +DD P FPR
Sbjct: 1   MAAPSKNKKKGPDRKSKDAGTKFNKASKKPFKAKKKGSNDAVAPEAMAFQLEDDAPEFPR 60

Query: 57  GGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANET-VDDLGSLFGDGI 115
           GG  SL++RER+EI AEVDAEFE+ ER L    KK K K  +  + +  DDLGSLFGDG+
Sbjct: 61  GGASSLSRREREEIRAEVDAEFESEERSLMMMKKKNKGKKLQNKSHSEADDLGSLFGDGL 120

Query: 116 SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEI 175
           +GKLPR+AN IT KNIS GMK+WGVVAEVNEKDLVI LPGGLRGLAR+ DALDP+  +EI
Sbjct: 121 TGKLPRFANNITFKNISPGMKVWGVVAEVNEKDLVISLPGGLRGLARSVDALDPVFGDEI 180

Query: 176 EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 235
           E  E NL P+IF  GQLVSC VLQLD+DKK+ G RKI LSLRLSLL+KG SL+ +QEGMV
Sbjct: 181 EDIEGNL-PSIFCTGQLVSCTVLQLDEDKKDSGTRKIRLSLRLSLLHKGFSLDAIQEGMV 239

Query: 236 LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVY 295
           LTAYVKSIEDHGYILHFGLPSFTGFLP+N+  E+S  +VK G LLQG+VR +D+TRKVVY
Sbjct: 240 LTAYVKSIEDHGYILHFGLPSFTGFLPKNSQDESSSAEVKTGQLLQGIVRRVDKTRKVVY 299

Query: 296 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
           LSSDP  VSKCV KDLKGISIDLLVPGMMV+ RVQS L NG+MLSFLTYF+GTVDIFHLQ
Sbjct: 300 LSSDPSAVSKCVVKDLKGISIDLLVPGMMVNARVQSTLGNGIMLSFLTYFSGTVDIFHLQ 359

Query: 356 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSK 415
           NTF  +NW++DYN +KKVNARILFVDP++RAVGLTLN +L+HN APP+HVKVGDIYD +K
Sbjct: 360 NTFSASNWRDDYNNNKKVNARILFVDPSTRAVGLTLNQHLVHNHAPPTHVKVGDIYDGAK 419

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           VVRVD+ +GLLL+IPS PVSTPAYV+               YKEGS VRVRILG+RHLEG
Sbjct: 420 VVRVDKSMGLLLEIPSAPVSTPAYVS---------------YKEGSKVRVRILGYRHLEG 464

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
           LATGILKASAFEG VFTHSDVKPGMVV+ K+IAVDSFGAIVQFPGG+KALCPL HMSEFE
Sbjct: 465 LATGILKASAFEGPVFTHSDVKPGMVVRAKIIAVDSFGAIVQFPGGLKALCPLRHMSEFE 524

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
           I KP KKFKVGAEL+FRVLG KSKRITVTHKKTLVKSKLAILSSYAEATD LITHGWITK
Sbjct: 525 IAKPRKKFKVGAELLFRVLGCKSKRITVTHKKTLVKSKLAILSSYAEATDGLITHGWITK 584

Query: 596 IEKHGCFVRFYNGVQGFAPR 615
           IEKHGCFV FYNGVQGFAPR
Sbjct: 585 IEKHGCFVHFYNGVQGFAPR 604



 Score = 46.6 bits (109), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D+ P M+V+  +  V S G  +     L A   L ++S+  +  P K+F +G  +  RVL
Sbjct: 484  DVKPGMVVRAKIIAVDSFGAIVQFPGGLKALCPLRHMSEFEIAKPRKKFKVGAELLFRVL 543

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYGLFITIEN 1479
              +  SKR+ VT K    +T  +S++  LS+      G I  G I ++E +G F+   N
Sbjct: 544  GCK--SKRITVTHK----KTLVKSKLAILSSYAEATDGLITHGWITKIEKHGCFVHFYN 596



 Score = 41.2 bits (95), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
           VL  +S  + ++ K +L+ S   + S  +      + HG++  I + GCFV F   + GF
Sbjct: 542 VLGCKSKRITVTHKKTLVKSKLAILSSYAEATDGLITHGWITKIEKHGCFVHFYNGVQGF 601

Query: 789 APR 791
           APR
Sbjct: 602 APR 604


>gi|449502545|ref|XP_004161672.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Cucumis
           sativus]
          Length = 609

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/615 (66%), Positives = 489/615 (79%), Gaps = 25/615 (4%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           MA  SRKSQ     DG KFNK SK  F NSKK++++  + + ++L  +DDVP FPRGGG 
Sbjct: 1   MAPPSRKSQ-----DGSKFNKHSKRPF-NSKKKMSETAKPETVSLQIEDDVPDFPRGGGG 54

Query: 61  SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLP 120
            ++Q + +++ AE D EF+  +  +  K  KK+    RK     DDL SL  +G+ G LP
Sbjct: 55  YMSQNKGEKVRAEGDKEFQNDDLKMTTKRGKKR----RKHPSNGDDLESLLNNGVVGNLP 110

Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANED 180
           +YANKITLKNI+  MK WGVVAEVN+KDLVI LPGGLRGL  AA+A DPIL+ E+E  E 
Sbjct: 111 KYANKITLKNINPRMKFWGVVAEVNKKDLVISLPGGLRGLVSAAEAFDPILEKEVEDTEH 170

Query: 181 NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
           +LLP +FHVGQLV C+VL++DDDKKE GKRKIWLSLRLS+LYK  +L+ +QEGMVLT+YV
Sbjct: 171 DLLPVMFHVGQLVPCVVLKVDDDKKESGKRKIWLSLRLSILYKDFTLDLLQEGMVLTSYV 230

Query: 241 KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
           KSIEDHGYILHFGL SFTGFLP+   ++ S  +V  G LLQ VVRSID+TRKVVY SSD 
Sbjct: 231 KSIEDHGYILHFGLTSFTGFLPKTKQSDQSENEVHVGQLLQCVVRSIDKTRKVVYFSSDQ 290

Query: 301 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
           D VS  V KDLKGISIDLL+PGMMVS RVQS LENG++LSFLTYF GTVD+FHLQN+F +
Sbjct: 291 DIVSSSVAKDLKGISIDLLIPGMMVSARVQSTLENGILLSFLTYFNGTVDMFHLQNSFHS 350

Query: 361 TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 420
           +NWK+ YNQ+ K+NARILF+DP++RAVGLTL P+L+ N+A P H+++GDIYD +KVVRVD
Sbjct: 351 SNWKDFYNQNMKMNARILFIDPSTRAVGLTLIPHLVRNKAAPPHLRIGDIYDSAKVVRVD 410

Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
           RG GLLL++PS+P STP +V+               +KEGS VRVRILGFRHLEGLA G 
Sbjct: 411 RGFGLLLEVPSSPESTPTFVS---------------FKEGSRVRVRILGFRHLEGLAIGT 455

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
           LKASAFEG VF++SDVKPG +++ KVI VD FGAIVQFPGG+KALCPL HMSEFEIVKP 
Sbjct: 456 LKASAFEGPVFSYSDVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIVKPR 515

Query: 541 KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           KKFKVGAEL+FRVLG KSKRITVTHKKTLVKSKL +LSSYA+AT  L+THGWITKI KHG
Sbjct: 516 KKFKVGAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIXKHG 575

Query: 601 CFVRFYNGVQGFAPR 615
           CFVRFYNGVQGFAPR
Sbjct: 576 CFVRFYNGVQGFAPR 590



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 15/130 (11%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD- 725
           VK G+L+   V VV     +V     G  K   P  H+++          ++KP  +F  
Sbjct: 471 VKPGTLIRAKVIVVDDFGAIVQF--PGGLKALCPLSHMSEF--------EIVKPRKKFKV 520

Query: 726 --QLL--VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
             +L+  VL  +S  + ++ K +L+ S  ++ S  +      V HG++  I + GCFVRF
Sbjct: 521 GAELIFRVLGCKSKRITVTHKKTLVKSKLEVLSSYADATAGLVTHGWITKIXKHGCFVRF 580

Query: 782 LGRLTGFAPR 791
              + GFAPR
Sbjct: 581 YNGVQGFAPR 590



 Score = 41.6 bits (96), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D+ P  +++  V  V   G  +     L A   LS++S+  +  P K+F +G  +  RVL
Sbjct: 470  DVKPGTLIRAKVIVVDDFGAIVQFPGGLKALCPLSHMSEFEIVKPRKKFKVGAELIFRVL 529

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIEN 1479
              +  SKR+ VT K    +T  +S++  LS   +   G +  G I ++  +G F+   N
Sbjct: 530  GCK--SKRITVTHK----KTLVKSKLEVLSSYADATAGLVTHGWITKIXKHGCFVRFYN 582


>gi|115471081|ref|NP_001059139.1| Os07g0203300 [Oryza sativa Japonica Group]
 gi|113610675|dbj|BAF21053.1| Os07g0203300, partial [Oryza sativa Japonica Group]
          Length = 689

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/707 (57%), Positives = 527/707 (74%), Gaps = 24/707 (3%)

Query: 1223 INKEKKLLRLVL---RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            +N+EK+LLRL     +   + I +    +S     T   +GDI+GGRI KIL GVGGLV+
Sbjct: 2    VNREKRLLRLKALDSQSLPENIGETQKPLSATVEHT--KQGDIIGGRIQKILPGVGGLVI 59

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
            QIGPHL+GRVH+TE+ +  V +P+SG+ EGQFVKCKVL++SR+  G+  V+LSLRSS+  
Sbjct: 60   QIGPHLHGRVHYTEIVDSWVQEPISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLRSSM-C 118

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
             +S  S  L  D        EKI DL P   V+GYVK+V SKGCFIM+SR ++A+++LSN
Sbjct: 119  ANSNQSRRLFDDSRIRTSRFEKINDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSN 178

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1459
            LSD YVE+P+ +FP+G LV GRVLS EP S +VEV+L+ +    + +S+  + S+LHVGD
Sbjct: 179  LSDEYVENPQNDFPVGLLVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGD 238

Query: 1460 IVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKE 1519
            I+ GQ+KRVES+GLF+TI+ + LV LCHVSELS++ V +I + ++AG+KVK KILK+D+E
Sbjct: 239  IIAGQVKRVESFGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDKVKAKILKIDEE 298

Query: 1520 KRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESED 1579
            + R+S+GMK SY   D+     +S++E DE + E  S N                M  + 
Sbjct: 299  RHRVSIGMKKSYIGPDSTG--DTSDDEDDEIVPEEISRNPV--------------MGRDR 342

Query: 1580 GGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKE 1639
              +LVL + ESRASV PL+V+LD+ +       ++ Q   +  +  D+K+N+  K+K ++
Sbjct: 343  NHALVLPKPESRASVLPLQVSLDESEGSDQENDNKGQEIANGTEVDDKKSNKRLKEKARK 402

Query: 1640 EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1699
            +RE EI A EER L++D P+TPDEFE+LVRSSPNSSFVWI YMAF+L +ADV+KAR++AE
Sbjct: 403  QRELEISALEERALQRDIPQTPDEFEKLVRSSPNSSFVWINYMAFLLDLADVDKARAVAE 462

Query: 1700 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1759
            RAL+TINIREE EKLN+WVAYFNLENEYG+P E+AV K+FQRALQYCDPKKVHLALL +Y
Sbjct: 463  RALRTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLAMY 522

Query: 1760 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKH 1817
            ERTEQ  LADELL +M K+FK SCK+WLR +Q  LKQ +  E ++ +V+RALLSLP+ K 
Sbjct: 523  ERTEQYTLADELLDRMTKRFKTSCKIWLRCIQLSLKQSKDVECIKLIVKRALLSLPQSKR 582

Query: 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877
             KF+SQTAILEFK GV + GRS FE IL EYPKRTDLWS+YLDQEIRLGD ++IR LFER
Sbjct: 583  RKFLSQTAILEFKCGVPEEGRSRFELILREYPKRTDLWSVYLDQEIRLGDTEIIRALFER 642

Query: 1878 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
               LSLPPKKMKFLFKKYLEYEKS G+EERIE+VKQKA+EYV+S+LA
Sbjct: 643  VTCLSLPPKKMKFLFKKYLEYEKSQGDEERIEHVKQKALEYVQSSLA 689



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 139/303 (45%), Gaps = 31/303 (10%)

Query: 1064 GSLVQAEITEIKPL--ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            G ++   I +I P    L ++ G   HGR+H TE+ D   + V+   S F  GQ V  ++
Sbjct: 40   GDIIGGRIQKILPGVGGLVIQIGPHLHGRVHYTEIVD---SWVQEPISGFHEGQFVKCKV 96

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL---------FEEC-DVSIGQRVTGYV 1171
            +  S   +   S   +LS++ SM   S    +L          FE+  D+  G  V GYV
Sbjct: 97   LDVSRSSE--GSVRVDLSLRSSMCANSNQSRRLFDDSRIRTSRFEKINDLCPGTEVKGYV 154

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
              V+++   + +SR ++A++ +  S      ++  Q  F +G  V G VLS   +   + 
Sbjct: 155  KSVNSKGCFIMVSRTIEARIIL--SNLSDEYVENPQNDFPVGLLVHGRVLSSEPQSGKVE 212

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI-GPHLYGRVH 1290
            + LR      S K+ DIS  ++    H GDI+ G++ ++ S   GL V I G  L    H
Sbjct: 213  VSLRKNTGSKSQKSDDISYSDL----HVGDIIAGQVKRVES--FGLFVTIQGSELVALCH 266

Query: 1291 FTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1350
             +EL +  V D  S +  G  VK K+L+I         V + ++ S  G  ST   D S 
Sbjct: 267  VSELSDEPVLDIHSCHKAGDKVKAKILKIDEE---RHRVSIGMKKSYIGPDSTG--DTSD 321

Query: 1351 DVD 1353
            D D
Sbjct: 322  DED 324



 Score = 47.8 bits (112), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 10/188 (5%)

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
           ++ S FE +    +D+ PG  VKG V +V+S G  +     ++A   L ++S+  +  P 
Sbjct: 133 IRTSRFEKI----NDLCPGTEVKGYVKSVNSKGCFIMVSRTIEARIILSNLSDEYVENPQ 188

Query: 541 KKFKVGAELVFRVLGV--KSKRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
             F VG  +  RVL    +S ++ V+  K T  KS+ +   SY++     I  G + ++E
Sbjct: 189 NDFPVGLLVHGRVLSSEPQSGKVEVSLRKNTGSKSQKSDDISYSDLHVGDIIAGQVKRVE 248

Query: 598 KHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
             G FV      +      SEL  +P  +  S +  G  VK +I+       R+++   M
Sbjct: 249 SFGLFVTIQGSELVALCHVSELSDEPVLDIHSCHKAGDKVKAKILKIDEERHRVSIG--M 306

Query: 657 KPTRVSED 664
           K + +  D
Sbjct: 307 KKSYIGPD 314


>gi|308808252|ref|XP_003081436.1| rRNA processing protein Rrp5 (ISS) [Ostreococcus tauri]
 gi|116059899|emb|CAL55958.1| rRNA processing protein Rrp5 (ISS) [Ostreococcus tauri]
          Length = 1947

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1464 (32%), Positives = 805/1464 (54%), Gaps = 130/1464 (8%)

Query: 121  RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI---------- 170
            +Y   +  K++ +G+KL GVV+EV  + LV+ LP GLRG    A+A D            
Sbjct: 104  KYVETLKYKSLRSGVKLLGVVSEVTARGLVMSLPDGLRGTVARAEASDVFRGATRSAGAE 163

Query: 171  --------LDNEIEANEDNL-LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                     D+E E  E+ + L +++  GQ++ C+VL LD  K + G ++I LSLRL  +
Sbjct: 164  SADDESESSDDEFEGEEETISLESLYEPGQVLRCVVLSLD--KGKTGGKRIELSLRLENV 221

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQ 281
              G+  +++ EG V  A VKSIEDHGYIL FG+   +GFLP+ ++A +  + ++ G +L 
Sbjct: 222  CAGIGKDSLVEGSVAPAMVKSIEDHGYILDFGIAGTSGFLPKKSVAND--LTIRRGKILD 279

Query: 282  GVVRSIDRTRKVVY-LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
             V+ +     K  + ++SD   V+  V+ +    ++  L+PGM+V++RV+ +L +G++ S
Sbjct: 280  VVITATPTGNKGYFTVTSDQKRVTSSVSHETSATNVSTLLPGMLVNSRVKQVLADGILCS 339

Query: 341  FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA 400
            F+T+F+GTVD F   +   T    + +   +++ AR++FVD  ++ V LTL P+LL + +
Sbjct: 340  FMTFFSGTVDCFQTGSVATTKGVASAFKVGQRMRARVIFVDAVAKRVCLTLLPHLLEHTS 399

Query: 401  PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 460
              +  K+G ++  + + RVD G G+ L +        AY  +S +++E V K+EKK+K G
Sbjct: 400  I-TLPKLGKVFQTATIARVDAGQGVALSVSDGDDHIAAYAHVSQLSDERVEKVEKKFKIG 458

Query: 461  SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG 520
              V VR++G R ++G+ +  LK+S      F+  ++ PGM+V G+V+AV+ +GAIV+   
Sbjct: 459  RSVNVRVIGHRLMDGIVSVSLKSSVMAQPFFSLEELTPGMLVNGEVVAVEHYGAIVKLAE 518

Query: 521  GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILS 578
            G+KALCP  H+S+        K   GA+L FRVL V   S+R TV+HK+TL+KS+L +++
Sbjct: 519  GIKALCPPLHVSDIVGRTTSSKVSPGAKLKFRVLNVDKNSRRATVSHKRTLIKSELPVIA 578

Query: 579  SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
            S  +A    +THG +T + ++G F+  Y  ++G A  ++LGL    +PS  + VGQVV+ 
Sbjct: 579  SLEDALPGAVTHGVVTGVNEYGVFISLYGDLRGLANVNDLGLLSDQKPSDAFGVGQVVRV 638

Query: 639  RIMSSIPASRRINLS-------------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV 685
             I+S+  AS R+ LS              M+  +       + + + V   V   T N  
Sbjct: 639  TIVSA-DASGRLRLSLAAGVALEAKTPGLMINASAADLTPGIIVETAVVTHVSAQTGNVE 697

Query: 686  VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 745
            VV+   KG   G I   HL+DH   AT + SV+ PG +   L+VL+ + +  +LS K SL
Sbjct: 698  VVFTAEKGNVPGIIALAHLSDHPLTATGLSSVLNPGDKIGPLVVLEGKPTRAVLSRKLSL 757

Query: 746  INSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
            + S+Q  +LP+ A    P SV  GYV +    G FVRFLG+LTG AP S+ VDG  AD+ 
Sbjct: 758  VESSQNSKLPASAEEATPGSVFPGYVASATSAGVFVRFLGKLTGLAPPSQLVDGVSADIH 817

Query: 804  KTYYVGQSVRSNILDVNSETG--RITLSLKQSCCSS--TDASFMQEHF----LLEEKIAM 855
              + VG++V + +L V++ T   R++LSLK S  SS  +DA  ++  F    LL+E++A 
Sbjct: 818  DMFPVGKTVNALVLAVDTSTSPPRLSLSLKLSATSSPLSDAPLIRSFFNDIELLDERVA- 876

Query: 856  LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT-V 914
              ++   G   +  +    G+ ++  V+E+ ++GV++     S+  G +T HQL  +   
Sbjct: 877  --NADDVGISPETAKSLQPGTWMDVTVNETKEYGVLMDMAIDSNAVGLVTPHQLPESVEF 934

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG  ++  +LDV++ E +VD+ +++  ++RF+    N+ A  K  KR     L V   V
Sbjct: 935  ESGDAVKCYVLDVSRREGVVDMGMRS-GLERFKR---NKTASGKSLKR-----LKVGDEV 985

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             A VE+VK  Y V SLP+++  IGYASV   N + +   ++F   Q V A V  LP  + 
Sbjct: 986  TADVELVKAEYAVFSLPDHSGLIGYASVHHLNRSYEDATQRFTPAQRVKAIVAQLPDGAN 1045

Query: 1034 AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
             GRLLL +       T SS   K  +    G+LV+  ++EI+PL+  +       GR++I
Sbjct: 1046 -GRLLLTVPV-----TISSSGGKIAA----GTLVKGVVSEIQPLQALVALPNNARGRLYI 1095

Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
            +E +  +    E   ++  +G T+ A ++  +     ++  L +LS+            K
Sbjct: 1096 SEFDLTE----EKPLASVSVGSTIEATVLGLAG----ERGGLLDLSVH----------RK 1137

Query: 1154 LLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHI 1212
              F    VS+G  +  YV  +  +   +T++  + + +  ++++ + SEL E  + RF I
Sbjct: 1138 SAFSLDGVSVGDSLNAYVLSITQDGLKVTVAPGVTSFIPKIETSDKASELSESLETRFVI 1197

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
            G+ V    + I   K+ + L LR                    F      VG ++  I++
Sbjct: 1198 GQRVRATAVDIKLNKRRIDLTLR----------------TESVFGSNKVCVGAKLHGIVT 1241

Query: 1273 GV---GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
             V    G++VQIG H +GR+H T+L +    +P + Y  G  V+ +VL +S     +  +
Sbjct: 1242 RVVKHAGVMVQIGSHSFGRIHLTDLSDELKEEPSASYAAGAVVQVRVLNVSP----SGEI 1297

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
            +LS R+S   MSS   + L  D +     ++ + +L P   ++GYVK  T KGCF+ LSR
Sbjct: 1298 DLSTRASR--MSS--KTILPEDAE-----VQDVANLVPGQRIKGYVKATTKKGCFVALSR 1348

Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
             +DA   LSNL+D ++  P   FP GKLV GR++S +    RVE++L+  ++ +   +++
Sbjct: 1349 SIDAMCKLSNLADDFIADPIASFPPGKLVQGRIVSADAAKGRVEISLRERENSSQGNADV 1408

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-DNIETIYRAGEK 1508
               S + VG +++G ++RV+ YG+FI ++ T L GLCH+S  ++  + D++    R GE+
Sbjct: 1409 ---SGVDVGSVMMGTVRRVQPYGVFIGLDGTKLSGLCHISMFADARINDDLSLHVRQGER 1465

Query: 1509 VKVKILKVDKEKRRISLGMKSSYF 1532
            V+VK+L+++ E ++ISLG K+S F
Sbjct: 1466 VRVKVLEINAETKKISLGCKASLF 1489



 Score =  313 bits (802), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 156/324 (48%), Positives = 217/324 (66%), Gaps = 20/324 (6%)

Query: 1599 VNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA- 1657
            VN+D + PD             +AK + ++     KK+ KE +E EI   E+ L + DA 
Sbjct: 1636 VNVDSDNPD-------------DAKPLSKRE----KKRLKEAKELEILQKEQALRDGDAV 1678

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P +  EFE+L+ +SP SSF+W++YMAF +S     +AR +AERA+  I   EE E++NIW
Sbjct: 1679 PESAMEFEKLLIASPRSSFLWVRYMAFHVSCGAYAEAREVAERAIVAIPASEETERMNIW 1738

Query: 1718 VAYFNLENEYGNP-PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
             AY NLEN+YG P PEEAV K+F RA+Q  + K +H+ L+ +YER  Q +  ++ L K  
Sbjct: 1739 AAYLNLENKYGTPTPEEAVKKLFTRAVQLSNAKHLHMTLISMYERNGQQQSLEDALKKAA 1798

Query: 1777 KKFKHSCKVWLRRVQR-LLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835
            KKF +S KVWL  ++  +LK   E  + ++ RA  +LP+HKHIK + +TA+ E K G  +
Sbjct: 1799 KKFSYSTKVWLAYIRAAVLKGNSEWARQLLDRATQALPKHKHIKILMRTALFEMKEGNPE 1858

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            RGR+MFEGIL  YP+RTD+WS+Y+DQEI+ GDV  IR LFERA  L L  K MKFLFK+Y
Sbjct: 1859 RGRTMFEGILRNYPRRTDIWSVYIDQEIKQGDVLRIRALFERATHLDLNAKSMKFLFKRY 1918

Query: 1896 LEYEKSVGEEERIEYVKQKAMEYV 1919
            L++E+S G++ERI +VKQ+AMEYV
Sbjct: 1919 LDFERSEGDDERIAHVKQRAMEYV 1942


>gi|301097567|ref|XP_002897878.1| rRNA biogenesis protein rrp5 [Phytophthora infestans T30-4]
 gi|262106626|gb|EEY64678.1| rRNA biogenesis protein rrp5 [Phytophthora infestans T30-4]
          Length = 1882

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/1923 (30%), Positives = 944/1923 (49%), Gaps = 236/1923 (12%)

Query: 123  ANKITLKNISAGMKLWGVVAEVNE-KDLVICLPGGLRGLARAADALDPILDNEIEANEDN 181
            A  +T K +  GM L G V ++ + +DL+I LP  L G      AL+   D+        
Sbjct: 74   ATLLTFKALRKGMLLLGCVRQITDGQDLMISLPNKLNGTV----ALNECSDD-------- 121

Query: 182  LLPTIFHVGQLVSCIVLQLDDDKKEIGKRK-IWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
               T+F VGQ V C+VL       + GKRK I LSLR SLL+  LS  ++ +G  L A V
Sbjct: 122  ---TLFKVGQFVPCVVLATG----KTGKRKQIHLSLRTSLLHAELSPGSLTKGTSLHATV 174

Query: 241  KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
             S+EDHG I++ G+     F+PR  L   +    K   LL  VV S++       ++ D 
Sbjct: 175  SSVEDHGAIVNLGIRGVHAFVPRKELTTPAH---KGQHLLVNVV-SMNMHTNTATVTIDR 230

Query: 301  DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
              V K VT+     ++  LVPGM+++ RV+ +LENG+ ++FL++F+ TV+  H+  + P 
Sbjct: 231  SQVVKAVTRG-DSFTLKQLVPGMLLNVRVEDVLENGLSVTFLSFFSATVEQNHM--SLPC 287

Query: 361  T-NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRV 419
               W+  Y +  K  ARI+ +D  ++ + L++ P+++H + P S    GDI +++ + R+
Sbjct: 288  ERGWEESYRKGMKARARIVSIDYIAKQITLSMAPHVVHLQVPESLFSAGDIIEEATIERI 347

Query: 420  DRGLGLLLDIPST---------------------PVSTPAYVTISDVAEEEVRKLEKKYK 458
            D G+G+LL + S                          P YV IS+V+++ V KLEKK+ 
Sbjct: 348  DVGIGMLLSLKSQDEDVDMEDASDKKENTTNAKWKAFAPGYVHISNVSDKRVDKLEKKFT 407

Query: 459  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
             GS ++ R+LGF   + +A+      +    V  H D+KPG  V GK+++V+S+G +++ 
Sbjct: 408  VGSSIKCRVLGFSPFDAVASVSCTEHSISQTVLRHKDLKPGTKVNGKILSVESWGILMEI 467

Query: 519  PGGVKALCPLPHMSEFEIVKPGK--KFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKL 574
              GV+ L    HM  F + K     K+K G     RVL V   + +  +T K  L+ S L
Sbjct: 468  SEGVRGLVTSQHMPAFLLNKKANSGKYKAGKTTSARVLHVDLDANKTYLTMKSGLLSSDL 527

Query: 575  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVG 633
             +LSS+ EAT  LI HG+ITKI ++G  V FYN V G  P + L    G E     Y  G
Sbjct: 528  PVLSSFKEATMGLIAHGFITKIGEYGVIVTFYNNVYGLVPMAVLQ-QAGIENLEEAYVPG 586

Query: 634  QVVKCRIMSSIPASRRINLSFMM-------KPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 686
            QVVK R+       +R+ LSF         KPT   E     +G+ ++ V  +   +   
Sbjct: 587  QVVKARVTRCDANRKRLMLSFDTTSNSSGNKPTAAPEIASKLVGTKITNV-KITDVDTTC 645

Query: 687  VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD----QLLVLDNESSN-LLLSA 741
              V  K   +G +P   L D   + +++  ++K     D     LLV+  ES   L+LS 
Sbjct: 646  FRVQTKDGMEGVLPFVQLTDFPRNTSLVDKIVKRFSAGDVISEPLLVVSQESDGVLMLSK 705

Query: 742  KYSLINSAQQ---LPSDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPRS---KA 794
            K  L+  A +   LP     +  N+V+ GYV ++ +  G FV+FL  L   AP+    + 
Sbjct: 706  KPLLLEFASRKAILPRTFRDVQENAVLIGYVTSVNVSKGVFVKFLNNLVAVAPKGFLKEQ 765

Query: 795  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS-------CCSSTDASFMQEHF 847
              GQ  +  + + +G++V  ++  ++ E  +  +  +QS         +    +F Q + 
Sbjct: 766  FVGQIDE--EMFEIGETVTCSVAKMDKEKKQFVVGFQQSNFVLPTNSTNKARPAFFQAY- 822

Query: 848  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITH 906
             L E     Q+S  N +E+K    F +G   + +      +G V + E +   V   +  
Sbjct: 823  -LRE-----QASVRNAAEVK-KSPFALGKSEKTEFVGVRPYGAVFALETDEETVTVLVPS 875

Query: 907  HQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK 966
                    + G  ++  + D        D S K V+     E+     ++K +++++  K
Sbjct: 876  VTEKNNEWDEGDTVKLLLTDY-------DFS-KNVYYGAADESLVKSGSKKSRKQKQRVK 927

Query: 967  DLGVHQTVNAIVEIVKENYLVLSLPEYNHS----IGYASVSDY--NTQKFPQKQFLNGQS 1020
              G       +     E Y V+S P+  ++     G   + D+   +Q   Q     G S
Sbjct: 928  TGGKIAAATVLAVSPTEKYAVVSFPDPQNADLLQFGVVQLCDFWCPSQTSSQLGIEVGAS 987

Query: 1021 VIATVM---------ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD-----VGSL 1066
            +   V+         + P    A   L   + +++T+ SS K + K   Y      +G++
Sbjct: 988  IECRVVQPSLKSVSNSTPFDDLALLALEEEELVAKTKASSRKTSSKVPKYTQEDLVLGNI 1047

Query: 1067 VQAEITEI--KPLELRL---KFGIGFHGRIHITEVN--DDKSNVVENLFSNFKIGQTVTA 1119
            +   I+ I    +E+R+   K        + I +VN  D+KS    + F  + +  TVT 
Sbjct: 1048 LTGVISGISENSMEIRVETHKKAGKVRATVSIVDVNGIDEKSGH-SHPFDRYSVNTTVTG 1106

Query: 1120 RIIAKSNKPDMK----------KSFLWELS------------------IKPSMLTVSEIG 1151
            R+IA S K   K          K    +LS                  ++P  L  S  G
Sbjct: 1107 RVIAVSAKGANKLKPVSEENPAKFHALQLSLRSEDVAGDEKVEDVQRFVRPDWLEGSA-G 1165

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
              LL E      G  V G V   D +   + +S ++   L  ++ + +   ++EFQ ++ 
Sbjct: 1166 RALLKE------GNSVEGVVSDQDADHLTVKLSGNVTGTLSCVEVSEDVDVVREFQGKYP 1219

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +GK V   VL ++ EKK + L             +  S+   Q  +  G IV G IS   
Sbjct: 1220 VGKRVKCFVLQVDDEKKTVDL-----------SVIHASSAQSQAVVKSGTIVNGVISTKK 1268

Query: 1272 SGV--GGLVVQIGPHLYGRVHFTELKNICVSD--PLSGYDEGQFVKCKVLEISRTVRGTF 1327
            S +    ++VQIG H +GRV  TEL+    +D   L  +  G+ V+C VL  S       
Sbjct: 1269 SAIRPPSIMVQIGVHTFGRVCITELQTKWENDMLELPKFSVGKVVRCVVLSTSNN----- 1323

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
            H++LSLR   D + S  +           K   K  + +   +V   V   TS GCF+ +
Sbjct: 1324 HIDLSLRE--DALDSPKAY---------AKKSSKSAERNVGDLVPAIVATTTSSGCFVRV 1372

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
             R   A+V+L +LSD +V+ P+ +FP GKLVAGRV   +   + +E++LK S    +   
Sbjct: 1373 DRHTTARVMLRDLSDDFVKDPQTQFPSGKLVAGRV--TKKSDRGLELSLKAS--VVSDDV 1428

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-IETIYRAG 1506
             +   S+L  G  V G I +V++YG+F+ IE T + GLCH+SE++++ V   ++ I+  G
Sbjct: 1429 SVFKWSDLKEGLTVKGTITKVQTYGVFVRIEKTTISGLCHISEVADEKVTQPLDQIFSEG 1488

Query: 1507 EKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENS 1566
            + VK K+LKV  E RR+S G+K SYF+                         +  +++ S
Sbjct: 1489 DYVKAKVLKV--EDRRVSFGLKPSYFEAPV----------------------KKPVIKRS 1524

Query: 1567 SVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID 1626
              A  ++D+    G     +  E  ++  P+E + D     +   +          +  D
Sbjct: 1525 KPATMEIDL----GDDESSSDDEEASNAAPVEFSWDGFSDVLSKKVDSKDDDDSSDEEDD 1580

Query: 1627 EKNNRHAKKKEKEEREQ--EIRAAEERLL--EKDAPRTPDEFERLVRSSPNSSFVWIKYM 1682
            E+   ++ K  K+ R Q  E  A  E+ L   +D P++  ++ERL+  SP SS++WI++M
Sbjct: 1581 EEEAANSSKSSKKNRLQSDEWVALREKALASNEDVPQSASDYERLLAVSPQSSYLWIQFM 1640

Query: 1683 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1742
            AF +S+ D++ AR +A RA   ++ R+E EK+N+WVAY NLE+++G+  + + ++VF+ A
Sbjct: 1641 AFHVSLTDIDLARDVAVRATSAVSFRDEKEKMNVWVAYLNLEHDFGD--DASFLRVFKSA 1698

Query: 1743 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQ 1802
            LQ   PK+V+L L+ LY R E+++   + L  M KKF+ S + W+R +Q L+ Q+Q    
Sbjct: 1699 LQVNHPKRVYLHLIDLYARAEEHEDVKQTLATMQKKFRTSKQTWIRSLQYLVGQKQFAEA 1758

Query: 1803 A-VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861
            A  +QR+L SL  HKH+  I +   L ++ G  D+ R++FEGIL+ YPKR DLW++YLD+
Sbjct: 1759 AETLQRSLKSLAAHKHLPVILKYGQLLYEQGELDKARTIFEGILANYPKRMDLWNVYLDK 1818

Query: 1862 EIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            EI+ GDV L+R LFER +++    KKMKFLFKKYL++E+  G++E +E+VKQ A ++V S
Sbjct: 1819 EIKFGDVALVRALFERLLAMEFSAKKMKFLFKKYLQFEQDQGDDEHVEHVKQLAKDFVAS 1878

Query: 1922 TLA 1924
              A
Sbjct: 1879 AAA 1881


>gi|432113019|gb|ELK35597.1| Protein RRP5 like protein [Myotis davidii]
          Length = 1877

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/1966 (29%), Positives = 954/1966 (48%), Gaps = 201/1966 (10%)

Query: 54   FPRGGGHSLTQRE--------RDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
            FPRGG     + E        +D +  ++  E E+++R   +K   K KK + +  E+  
Sbjct: 8    FPRGGTRKTHKSEIAPQQSVEQDNLF-DISTEEESIKRKKSQKGPAKTKKLKIEKRESSK 66

Query: 106  DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA-- 163
             +   F              ++++++  GM++ G V EVNE +LVI LP GL+G  +   
Sbjct: 67   SIEEKF------------EILSIESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTE 114

Query: 164  -ADALDPILDNEIEANED----NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
             +DA    L+ ++E  E       LP +F  G LV C+V  L   +K  GK+ + LSL  
Sbjct: 115  ISDAYTKKLNEQVEQEEPLKDLASLPELFSPGMLVRCVVSSLGITEK--GKKSVKLSLNP 172

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + K LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 173  QNVNKVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVGGARAFLPLQKAQEYIRQKNKGAK 232

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  V++ +     VV LS     VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 233  LKVGQYLHCVIKEVKGNGGVVSLSIGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVT 292

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              G+ L+FL++FTG VD  HL+     T + N     + V A +L V P +RAV L+L P
Sbjct: 293  PLGLTLNFLSFFTGLVDFMHLEPKKAGTYFSN-----QAVRACVLSVHPRTRAVRLSLRP 347

Query: 394  YLLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
              L    P + +    +G + D + V       G    +    +   AY  +S +++ + 
Sbjct: 348  VFLQPGRPLTQLSCQHLGAVLDDAPVQGFFSKAGATFRLKDGSL---AYARLSHLSDSKK 404

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKG V+ + 
Sbjct: 405  TFNPEAFKPGNTHKCRIINYSQMDELALLSLRTSIIEAQFLGYHDIKPGALVKGTVLTIK 464

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
             +G +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKT
Sbjct: 465  PYGMLVKVSEQIRGLVPPMHLADIPMKNPEKKYHIGDEVTCRVLLCDPEAKKLMMTLKKT 524

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+SKL  ++ Y      L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  
Sbjct: 525  LVESKLPAITCYDNTKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPEK 584

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDD----LVKLGSLVSGVVDVV 680
            +++ GQVVK  +++  P+  R+ LSF +    K   V +       V +G LV   V   
Sbjct: 585  VFYTGQVVKVAVLNCEPSKERMLLSFRLLSDPKKEHVGQSQKKRKAVNVGQLVDVKVLEK 644

Query: 681  TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
            T + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L     ++LL 
Sbjct: 645  TKDGLEVTVLPHNIP-AFLPTSHLSDHVANGPLLHHWLQAGDTLHRVLCLSQSEGHVLLC 703

Query: 741  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
             K +L+++ +  Q P   S IHP  ++ G+V +I + G FV+F   L+G AP++   D  
Sbjct: 704  RKPALVSTVEGGQDPKTFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKF 763

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAM 855
                S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +          LEE+  +
Sbjct: 764  VTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 823

Query: 856  LQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAG 911
                 +  S L + +     G V++ +V E  + G VV F E   V G +   + +  AG
Sbjct: 824  RSLMSNRDSVLIQTLAEMTPGMVLDLEVQEVLEDGSVV-FSE-GPVPGLVLRASKYHRAG 881

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              VESG   +A IL+V   +  V +SL    +        NR+A+K K+ RE       H
Sbjct: 882  QEVESGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGRE-------H 926

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
            Q   AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+     
Sbjct: 927  Q---AIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEP 983

Query: 1031 SSTAGRLLLLLKAISETETSSSKRA-------------------KKKSSYDVGSLVQAEI 1071
              T   LLL ++  +   T    R                    KKK +  +G +V   +
Sbjct: 984  GVTG--LLLAVEGPAAKRTMRQTRKDSETVDEDDEGDPCMVVGFKKKHTLSIGDMVTGTV 1041

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK 1127
              IKP  + +    G  G IH + + DD         +  K+G+ VTAR+I     K++K
Sbjct: 1042 KSIKPTHVVVTLENGIIGCIHASHILDDVPEGTSPT-ARLKVGKKVTARVIGGRDVKTSK 1100

Query: 1128 --PDMKKSFLW---ELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYV--YKV 1174
              P     F+    ELS++PS+L       ++      L +      GQ VT ++  Y V
Sbjct: 1101 FLPISHPRFIRTIPELSVRPSVLEKDGHAALNTHSVSPLEKIKQYQAGQTVTCFLKKYNV 1160

Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
              +W  + I+  ++ ++ +L  +     L+   ++F IG+A+   V+  +  K  L L L
Sbjct: 1161 IKKWLEVEIAPDIRGRIPMLLISLSFKVLKHPDKKFQIGQALKATVVGPDSSKAFLCLSL 1220

Query: 1235 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
                         I    ++    +G++  GR+ K+     GL V       GRV    +
Sbjct: 1221 -------------IGPHKLE----KGEVAMGRVVKVTPN-KGLTVSFPFGRTGRVSIFHV 1262

Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
             +     PL  +   + V+C VL  +  V     + LSLRSS         ++  T    
Sbjct: 1263 SDSYSEAPLEDFIPEKIVRCYVLSTADEV-----LTLSLRSS--------RTNPETKSKV 1309

Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------ 1408
            P   +  I+D+    +++GYVK+V   G  + L   +   V L+        SP      
Sbjct: 1310 PDPEINSIQDVQEGQLLRGYVKSVQPHGVLLGLGPSV---VGLAQYPRVSRHSPLEKALY 1366

Query: 1409 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKR 1467
            E+  P GKL+  +VLSV      VE++   SD+        +  LS L  G+  +   +R
Sbjct: 1367 ERYLPEGKLLTAKVLSVNHQKNLVELSFLPSDTGKPDVFPASPGLSPLKQGEKQVEVEER 1426

Query: 1468 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
                      +  N       ++  ++     E    + EK + +    +K+ +R     
Sbjct: 1427 DHKGKEEKEKKKKNQKRKEQRNQKGQE-----EAQLPSKEKKEPQKPHAEKQGKRPHRES 1481

Query: 1528 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQ 1587
             S   + +    + +  EE D  +E               V  ++ + E ED   L   +
Sbjct: 1482 ASEQERANKKQKKAAPAEEDDSGVE---------------VYYREGEEEVEDISVLPKGK 1526

Query: 1588 IESRASVPPLE--------VNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE-- 1637
                A VP L+        V L+   P +      +    DE      +  +  K++E  
Sbjct: 1527 QTRPAEVPRLQLSSGFVWDVGLESLTPALPPRRESSDSEEDEKPQQTTQKKKSKKERELE 1586

Query: 1638 KEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1696
            K++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR+
Sbjct: 1587 KQKAEKELSRMEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARA 1646

Query: 1697 IAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL 1756
            +AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L 
Sbjct: 1647 VAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLQLA 1704

Query: 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRH 1815
             +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q G    V+QRAL  LP+ 
Sbjct: 1705 DIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRGQAGASHRVMQRALECLPQK 1764

Query: 1816 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875
            +H+  IS+ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +F
Sbjct: 1765 EHVDVISKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIF 1824

Query: 1876 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            ER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA++YVE+
Sbjct: 1825 ERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALDYVEA 1870


>gi|119570024|gb|EAW49639.1| programmed cell death 11, isoform CRA_a [Homo sapiens]
          Length = 1872

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/1965 (29%), Positives = 952/1965 (48%), Gaps = 204/1965 (10%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K LL L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLT 1222

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+     GL V       G V    +
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHM 1263

Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
             +     PL  +   + V+C +L  +  V     + LSLR      SS  + +  + V+ 
Sbjct: 1264 SDSYSETPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVED 1312

Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--- 1411
            P   +  I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+   
Sbjct: 1313 P--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALY 1367

Query: 1412 ---FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1468
                P GKL+  RVL +      VE++    D+      + + LS    G +   + ++ 
Sbjct: 1368 NKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKT 1422

Query: 1469 ESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDK 1518
            E+       E  N       ++  ++ V+            +   R G + +    +   
Sbjct: 1423 EAEERDQKGEKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGS 1478

Query: 1519 EKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1578
            E+ R+S   K +    + D+L      E  E  EE     +    E  +   +   ++  
Sbjct: 1479 EQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLS 1534

Query: 1579 DGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEK 1638
             G +  +       ++PPL  + D E+ +  +  +Q             K ++  ++ EK
Sbjct: 1535 SGFAWNVGLDSLTPALPPLAESSDSEEDEKPHQATQI------------KKSKKERELEK 1582

Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1583 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1642

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1643 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1700

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1816
            +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +
Sbjct: 1701 IYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKE 1760

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
            H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1761 HVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFE 1820

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1821 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1865


>gi|348680504|gb|EGZ20320.1| hypothetical protein PHYSODRAFT_490560 [Phytophthora sojae]
          Length = 1892

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/1928 (29%), Positives = 945/1928 (49%), Gaps = 244/1928 (12%)

Query: 126  ITLKNISAGMKLWGVVAEVNE-KDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLP 184
            ++ K +  GM L G V +V + +DL+I LP  L G    A+  D                
Sbjct: 79   LSFKTLRKGMLLLGCVRQVTDGQDLMISLPNKLNGTVALAECSDD--------------- 123

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
            +IF VGQ V C+VL      K   +++I LSLR SLL+  LS+ ++ +G  L A V S+E
Sbjct: 124  SIFKVGQFVPCVVLATSKTDK---RKQIQLSLRTSLLHAELSVASLTKGASLHATVSSVE 180

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 304
            DHG I++ G+     F+PR  LA      V  G  L   V S++       ++ D  TV 
Sbjct: 181  DHGAIVNLGIRGVHAFVPRKELAA----PVLKGQHLLVSVLSMNAHTNTATVTIDRSTVV 236

Query: 305  KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT-NW 363
            K VT+     ++  LVPGM+++ RV+ +LENG+ ++FLT+FT TV+  H+  + P    W
Sbjct: 237  KAVTRG-DSFTLKQLVPGMLLNVRVEDVLENGLSVTFLTFFTATVEQNHM--SLPCERGW 293

Query: 364  KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGL 423
            +  + +  K  ARI+ +D  ++ + L++ P+++H + P S   VGDI +++ + R+D G+
Sbjct: 294  EESFRKGMKARARIMSIDYIAKQITLSIAPHVVHMQVPDSPYSVGDIIEEATIERIDAGV 353

Query: 424  GLLLDIPSTPVS------------------------TPAYVTISDVAEEEVRKLEKKYKE 459
            G+LL + S                             P YV IS+V+++ V KLEKKY  
Sbjct: 354  GMLLSLKSKTSQDEDVEMEDASEKKESTTNAKWKAFAPGYVHISNVSDKRVDKLEKKYTV 413

Query: 460  GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
            GS ++ R+LGF   + +     K SA    V  H D+ PG  V G +++V+S+G +++  
Sbjct: 414  GSSIKCRVLGFSPFDAVVNISCKESALSQTVLRHKDLAPGTKVSGIILSVESWGILMEIS 473

Query: 520  GGVKALCPLPHMSEFEIVKPGK---KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKL 574
             GV+ L    HM  F + K      K+KVG     RVL V  ++K+  +T K  L+ S+L
Sbjct: 474  EGVRGLVNPQHMPAFLLNKKANNNGKYKVGKVASARVLHVDLEAKKTFLTMKSGLLASEL 533

Query: 575  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVG 633
             +LSS+ EA   LI HG+ITKI ++G  V FYN V G  P + L    G E     Y +G
Sbjct: 534  PVLSSFEEAKMDLIAHGYITKIAEYGVIVTFYNNVYGLVPMAVLQ-QAGIENLEEAYVIG 592

Query: 634  QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK-------LGSLVSGVVDVVTPNAVV 686
            QVVK R+    P+ +R+ LSF     +               +G  ++ V  +    A  
Sbjct: 593  QVVKARVTRCDPSKKRLMLSFDTTSNKSGNAPTAAPETAAELVGKTITNV-KITDVEATC 651

Query: 687  VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ----LLVLDNESSNLL-LSA 741
              V      +G +P   L D     +++  ++K     D     LLV+  ES  +L LS 
Sbjct: 652  FRVQTADGMEGVLPFVQLTDFPRQTSLVDEIVKGFSAGDMISEPLLVVAQESDGVLTLSK 711

Query: 742  KYSLINSAQQ---LPSDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPRSKAVDG 797
            K  L+  A +   LP     +  N+V+ GYV ++ +  G FV+FL  L   AP+    + 
Sbjct: 712  KPLLLEFASRSAILPRTFGDVQENAVLIGYVTSVNVAKGVFVKFLNNLVAVAPKGFLKEE 771

Query: 798  QRADLSKTYY-VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ-EHFLLEEKIAM 855
              +++ +  + +G++V  ++  V+    +  +  KQ        +F+Q  +   + ++A 
Sbjct: 772  FVSEIEEGMFEIGETVTCSVESVDKAKKQFVVGFKQ-------GNFVQVTNATNKARLAY 824

Query: 856  LQSSKHNGSELKWVEGFIIGSVIEGKVHESN-----DFGVVVSFEEHSD-VYGFITHHQL 909
             Q+     + ++        S   GK  ++       +G V + E+  + V   +     
Sbjct: 825  FQAYLREQAAVRSAAAAKKASFALGKTEKAEFVGVRPYGAVFALEKDEETVTVLVPSVTE 884

Query: 910  AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
                 + G  ++  + D        D S K V+     E+     +++ +++++  K  G
Sbjct: 885  KNNEWDEGDSVKLLLTDY-------DFS-KNVYYAAADESLVKSGSKRSRKQKQRVKAGG 936

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHS----IGYASVSDY--NTQKFPQKQFLNGQSV-- 1021
              +    +     E Y V+S P+  ++     G   + D+   +Q   Q     G SV  
Sbjct: 937  KIEAAKVVAVSPTEKYAVVSFPDAQNADLLHFGVVELCDFWCPSQTSGQLGIEVGASVEC 996

Query: 1022 --IATVMALPSSSTAGRLLLLL-----KAISETETSSSKRAKKKSSYDVGSL-------- 1066
              + + +   S+ST    L+LL     K +S+ +  + K A K   Y    L        
Sbjct: 997  RVVQSTLKSGSNSTPFDDLVLLALAEEKLVSKAKKDTRKSASKLPKYSPNDLTLGNTLTG 1056

Query: 1067 VQAEITEIKPLELRLKFG--IG-FHGRIHITEVND-DKSNVVENLFSNFKIGQTVTARII 1122
            V A I+E   +E+R++ G  +G     + I +V+  D+     + F  + +   VT R+I
Sbjct: 1057 VIAGISE-NSMEIRVETGKKVGKVRATVSIVDVDGIDEKYGHAHPFDKYSVNAAVTGRVI 1115

Query: 1123 AKSNK------PDMKKSFLWELSIKPSMLT--------VSEI-------------GSKLL 1155
            A + K      P  K++     +I+ S+ T        V+++             G  LL
Sbjct: 1116 AVTAKGANKLKPVSKENPATFHAIQLSLRTEDVAGDEKVTDVQRFVRPDWLEGSAGRALL 1175

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             E      G  V G V     +   + +S ++   L  ++ + +   ++ FQ +F +GK 
Sbjct: 1176 KE------GNSVDGIVSDQGADQLTIKLSSNVTGTLSCVEVSEDVEVVRAFQDKFPVGKR 1229

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV- 1274
            V   VL ++ EKK + L L           +  S+   +  +  G I+ G ISK  S + 
Sbjct: 1230 VKCFVLQVDDEKKTVDLSL-----------IHSSSAQDKAVVKPGSIINGVISKKKSAIR 1278

Query: 1275 -GGLVVQIGPHLYGRVHFTELKNICVSD--PLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
               ++VQ+G H +GRV  TEL     ++   L  +  G+ V+C VL  +       H++L
Sbjct: 1279 PPSIMVQLGAHTFGRVCVTELLAKWENNMLELPQFAAGKVVRCVVLSNNNN-----HIDL 1333

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
            SLR   D ++  N  + +     P +    + DL P +     V + ++ GCF+ + R  
Sbjct: 1334 SLRK--DALA--NPKEYAKKTSKPAER--GVGDLVPAV-----VASTSTTGCFVRVDRHT 1382

Query: 1392 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1451
             A+V+L +LSD +V+ P++ FP GKLVAGRV   +   + +E++LK S    +    +  
Sbjct: 1383 TARVMLRDLSDDFVKDPQEHFPTGKLVAGRV--TKKSDRGLELSLKAS--VVSEDVSVFK 1438

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-IETIYRAGEKVK 1510
             ++L  G  V G + +V++YG+F+ IE + + GLCH+SE++++ V   ++ I+  G+ VK
Sbjct: 1439 WNDLKEGLTVKGTVTKVQTYGVFVRIEKSTISGLCHISEVADEKVTQPLDQIFSEGDYVK 1498

Query: 1511 VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAV 1570
             K+LKVD   RR+S G+K SYF+ +                         +    +    
Sbjct: 1499 AKVLKVDG--RRVSFGLKPSYFEGET-----------------------PAKKPAAKKVA 1533

Query: 1571 QDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNN 1630
            + + ME + G     ++ E  +   P+E + D        G S       EAK  DE ++
Sbjct: 1534 KPVAMEIDLGDDESSSEDEDASGAAPVEFSWD--------GFSNALNKKTEAKDDDESSS 1585

Query: 1631 -----------RHAKKKEKEEREQEIRAAEERLLEK--DAPRTPDEFERLVRSSPNSSFV 1677
                       + +K K+   +  E  A  E+ L    + P++  ++ERL+  SP SS++
Sbjct: 1586 EDEDDEEEEAAKSSKSKKNRLQSDEWVALREKALASSDEVPQSASDYERLLAVSPQSSYL 1645

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            WI+YMAF +S+ +V+ AR +A RA   ++ R+E EKLN+WVAY NLE+++G+  + + ++
Sbjct: 1646 WIQYMAFHISLTEVDLARDVAVRATSAVSFRDEKEKLNVWVAYMNLEHDFGD--DASFLR 1703

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1797
            VF+ ALQ   PK+V+L L+ LY R ++++   + L  M KKF+ S + W+R +Q L+ ++
Sbjct: 1704 VFKSALQVNHPKRVYLHLVDLYARADEHEDVKQTLATMQKKFRTSKQTWIRSLQYLVGEK 1763

Query: 1798 QEGVQA-VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
                 A  +QR+L SL  HKH+  I +   L ++ G  D+ R++FEGIL+ YPKR DLW+
Sbjct: 1764 LFAEAAETLQRSLKSLSAHKHLPVILKYGQLLYEQGELDKARTIFEGILANYPKRMDLWN 1823

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +YLD+EI+ GDV L+R LFER +++    KKMKFLFKKY+++E+  G++E +E+VKQ A 
Sbjct: 1824 VYLDKEIKFGDVALVRALFERLLAMDFSAKKMKFLFKKYMQFEQDQGDDEHVEHVKQLAK 1883

Query: 1917 EYVESTLA 1924
            ++V S  A
Sbjct: 1884 DFVASAAA 1891


>gi|410251480|gb|JAA13707.1| programmed cell death 11 [Pan troglodytes]
 gi|410295644|gb|JAA26422.1| programmed cell death 11 [Pan troglodytes]
          Length = 1871

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/1974 (29%), Positives = 948/1974 (48%), Gaps = 223/1974 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  RVQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKARVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVINCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     +  G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINTGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVREVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              A+V+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AVVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITE 1073
            T   LLL ++  +   T    R                     KK +  +G +V   +  
Sbjct: 988  TG--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKS 1045

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            IKP  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+
Sbjct: 1046 IKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KT 1100

Query: 1134 FLW-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YK 1173
            F +             ELS++PS L    T     S    E+      GQ VT ++  Y 
Sbjct: 1101 FKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYN 1160

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L 
Sbjct: 1161 VVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLS 1220

Query: 1234 LR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
            L  P +                  + EG++  GR+ K+     GL V       G V   
Sbjct: 1221 LTGPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIF 1261

Query: 1293 ELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1352
             + +     PL  +   + V+C +L  +  V     + LSLR      SS  + +  + V
Sbjct: 1262 HMSDSYSETPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKV 1310

Query: 1353 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE- 1411
            + P   +  I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+ 
Sbjct: 1311 EDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKT 1365

Query: 1412 -----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
                  P GKL+  RVL +      VE++    D+      + + LS    G +   + +
Sbjct: 1366 LYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEER 1420

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKV 1516
            + E+       E  N       ++  ++ V+            +   R G++ +    + 
Sbjct: 1421 KTEAEKRDQKGEKKNQKRNEKKNQKGQEEVEMPSKEEQQPQKPQAQKRGGQECR----ES 1476

Query: 1517 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDME 1576
              E+ R+S   K +    + D+L      E  E  EE     +    E  +   +   ++
Sbjct: 1477 GSEQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQ 1532

Query: 1577 SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKK 1636
               G +  +       ++PPL  + D E+                    DEK ++   KK
Sbjct: 1533 LSSGFAWNVGLDSLTPALPPLAESSDSEE--------------------DEKPHQATIKK 1572

Query: 1637 EKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1688
             K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +W++YMAF L  
Sbjct: 1573 SKKERELEKQKAEKELSRIEEALMDPGWQPESADDFDRLVLSSPNSSILWLQYMAFHLQA 1632

Query: 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748
             ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P
Sbjct: 1633 TEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEP 1690

Query: 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQR 1807
             KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QR
Sbjct: 1691 LKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQR 1750

Query: 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1867
            AL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G 
Sbjct: 1751 ALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGS 1810

Query: 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
               +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1811 QKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|332835295|ref|XP_508013.3| PREDICTED: protein RRP5 homolog [Pan troglodytes]
 gi|410355317|gb|JAA44262.1| programmed cell death 11 [Pan troglodytes]
          Length = 1871

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/1974 (29%), Positives = 948/1974 (48%), Gaps = 223/1974 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVINCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     +  G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINTGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVREVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              A+V+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AVVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITE 1073
            T   LLL ++  +   T    R                     KK +  +G +V   +  
Sbjct: 988  TG--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKS 1045

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            IKP  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+
Sbjct: 1046 IKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KT 1100

Query: 1134 FLW-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YK 1173
            F +             ELS++PS L    T     S    E+      GQ VT ++  Y 
Sbjct: 1101 FKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYN 1160

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L 
Sbjct: 1161 VVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLS 1220

Query: 1234 LR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
            L  P +                  + EG++  GR+ K+     GL V       G V   
Sbjct: 1221 LTGPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIF 1261

Query: 1293 ELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1352
             + +     PL  +   + V+C +L  +  V     + LSLR      SS  + +  + V
Sbjct: 1262 HMSDSYSETPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKV 1310

Query: 1353 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE- 1411
            + P   +  I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+ 
Sbjct: 1311 EDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKT 1365

Query: 1412 -----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
                  P GKL+  RVL +      VE++    D+      + + LS    G +   + +
Sbjct: 1366 LYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEER 1420

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKV 1516
            + E+       E  N       ++  ++ V+            +   R G++ +    + 
Sbjct: 1421 KTEAEKRDQKGEKKNQKRNEKKNQKGQEEVEMPSKEEQQPQKPQAQKRGGQECR----ES 1476

Query: 1517 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDME 1576
              E+ R+S   K +    + D+L      E  E  EE     +    E  +   +   ++
Sbjct: 1477 GSEQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQ 1532

Query: 1577 SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKK 1636
               G +  +       ++PPL  + D E+                    DEK ++   KK
Sbjct: 1533 LSSGFAWNVGLDSLTPALPPLAESSDSEE--------------------DEKPHQATIKK 1572

Query: 1637 EKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1688
             K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +W++YMAF L  
Sbjct: 1573 SKKERELEKQKAEKELSRIEEALMDPGWQPESADDFDRLVLSSPNSSILWLQYMAFHLQA 1632

Query: 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748
             ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P
Sbjct: 1633 TEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEP 1690

Query: 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQR 1807
             KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QR
Sbjct: 1691 LKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQR 1750

Query: 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1867
            AL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G 
Sbjct: 1751 ALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGS 1810

Query: 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
               +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1811 QKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|70980549|ref|NP_055791.1| protein RRP5 homolog [Homo sapiens]
 gi|145559523|sp|Q14690.3|RRP5_HUMAN RecName: Full=Protein RRP5 homolog; AltName: Full=NF-kappa-B-binding
            protein; Short=NFBP; AltName: Full=Programmed cell death
            protein 11
 gi|119570026|gb|EAW49641.1| programmed cell death 11, isoform CRA_c [Homo sapiens]
 gi|225000512|gb|AAI72442.1| Programmed cell death 11 [synthetic construct]
          Length = 1871

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/1965 (29%), Positives = 949/1965 (48%), Gaps = 205/1965 (10%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K LL L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLT 1222

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+     GL V       G V    +
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHM 1263

Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
             +     PL  +   + V+C +L  +  V     + LSLR      SS  + +  + V+ 
Sbjct: 1264 SDSYSETPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVED 1312

Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--- 1411
            P   +  I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+   
Sbjct: 1313 P--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALY 1367

Query: 1412 ---FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1468
                P GKL+  RVL +      VE++    D+      + + LS    G +   + ++ 
Sbjct: 1368 NKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKT 1422

Query: 1469 ESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDK 1518
            E+       E  N       ++  ++ V+            +   R G + +    +   
Sbjct: 1423 EAEERDQKGEKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGS 1478

Query: 1519 EKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1578
            E+ R+S   K +    + D+L      E  E  EE     +    E  +   +   ++  
Sbjct: 1479 EQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLS 1534

Query: 1579 DGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEK 1638
             G +  +       ++PPL  + D E+ +  +          +A     K  R  +K   
Sbjct: 1535 SGFAWNVGLDSLTPALPPLAESSDSEEDEKPH----------QATIKKSKKERELEK--- 1581

Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1582 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1641

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1642 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1699

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1816
            +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +
Sbjct: 1700 IYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKE 1759

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
            H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1760 HVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFE 1819

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1820 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|168272922|dbj|BAG10300.1| RRP5 protein homolog [synthetic construct]
          Length = 1871

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/1965 (29%), Positives = 948/1965 (48%), Gaps = 205/1965 (10%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLT 1222

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+     GL V       G V    +
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHM 1263

Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
             +     PL  +   + V+C +L  +  V     + LSLR      SS  + +  + V+ 
Sbjct: 1264 SDSYSETPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVED 1312

Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--- 1411
            P   +  I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+   
Sbjct: 1313 P--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALY 1367

Query: 1412 ---FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1468
                P GKL+  RVL +      VE++    D+      + + LS    G +   + ++ 
Sbjct: 1368 NKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKT 1422

Query: 1469 ESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDK 1518
            E+       E  N       ++  ++ V+            +   R G + +    +   
Sbjct: 1423 EAEERDQKGEKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGS 1478

Query: 1519 EKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1578
            E+ R+S   K +    + D+L      E  E  EE     +    E  +   +   ++  
Sbjct: 1479 EQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLS 1534

Query: 1579 DGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEK 1638
             G +  +       ++PPL  + D E+ +  +          +A     K  R  +K   
Sbjct: 1535 SGFAWNVGLDSLTPALPPLAESSDSEEDEKPH----------QATIKKSKKERELEK--- 1581

Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1582 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1641

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1642 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1699

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1816
            +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +
Sbjct: 1700 IYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKE 1759

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
            H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1760 HVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFE 1819

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1820 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864


>gi|1136430|dbj|BAA11502.1| KIAA0185 [Homo sapiens]
          Length = 1884

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/1965 (29%), Positives = 948/1965 (48%), Gaps = 205/1965 (10%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 21   FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 76

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 77   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 130

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 131  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 188

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 189  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 248

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 249  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 308

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 309  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 363

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 364  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 420

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 421  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 480

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 481  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 540

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 541  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 600

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 601  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 660

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 661  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 719

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 720  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 779

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 780  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 838

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 839  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 898

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 899  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 942

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 943  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 1000

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 1001 TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1060

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1061 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1115

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1116 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1175

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1176 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLT 1235

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+     GL V       G V    +
Sbjct: 1236 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHM 1276

Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
             +     PL  +   + V+C +L  +  V     + LSLR      SS  + +  + V+ 
Sbjct: 1277 SDSYSETPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVED 1325

Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--- 1411
            P   +  I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+   
Sbjct: 1326 P--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALY 1380

Query: 1412 ---FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1468
                P GKL+  RVL +      VE++    D+      + + LS    G +   + ++ 
Sbjct: 1381 NKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKT 1435

Query: 1469 ESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDK 1518
            E+       E  N       ++  ++ V+            +   R G + +    +   
Sbjct: 1436 EAEERDQKGEKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGS 1491

Query: 1519 EKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1578
            E+ R+S   K +    + D+L      E  E  EE     +    E  +   +   ++  
Sbjct: 1492 EQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLS 1547

Query: 1579 DGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEK 1638
             G +  +       ++PPL  + D E+ +  +          +A     K  R  +K   
Sbjct: 1548 SGFAWNVGLDSLTPALPPLAESSDSEEDEKPH----------QATIKKSKKERELEK--- 1594

Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1595 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1654

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1655 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1712

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1816
            +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +
Sbjct: 1713 IYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKE 1772

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
            H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1773 HVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFE 1832

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1833 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1877


>gi|119570025|gb|EAW49640.1| programmed cell death 11, isoform CRA_b [Homo sapiens]
          Length = 1872

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/1968 (28%), Positives = 949/1968 (48%), Gaps = 210/1968 (10%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      ++   
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVV--- 703

Query: 742  KYSLINSAQQL-----PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
              + I  A+++     P + S IHP  ++ G+V +I + G F++F   L+G AP++   D
Sbjct: 704  SLTGICGAEEVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSD 763

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
                  S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  L
Sbjct: 764  KFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEEL 822

Query: 857  QS-----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLA 910
            Q      S  +   ++ +     G  ++  V E   D  VV S     D+    + +  A
Sbjct: 823  QGVRSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRA 882

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
            G  VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       
Sbjct: 883  GQEVESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE------- 927

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 1029
            HQ   AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+    
Sbjct: 928  HQ---AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTE 984

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEIT 1072
               T   L +   A   T   + K ++                 KK +  +G +V   + 
Sbjct: 985  PGVTGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVK 1044

Query: 1073 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK 1132
             IKP  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K
Sbjct: 1045 SIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-K 1099

Query: 1133 SFLW-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--Y 1172
            +F +             ELS++PS L    T     S    E+      GQ VT ++  Y
Sbjct: 1100 TFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKY 1159

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
             V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K LL L
Sbjct: 1160 NVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCL 1219

Query: 1233 VLR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
             L  P +                  + EG++  GR+ K+     GL V       G V  
Sbjct: 1220 SLTGPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSI 1260

Query: 1292 TELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1351
              + +     PL  +   + V+C +L  +  V     + LSLR      SS  + +  + 
Sbjct: 1261 FHMSDSYSETPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSK 1309

Query: 1352 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1411
            V+ P   +  I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+
Sbjct: 1310 VEDP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKK 1364

Query: 1412 ------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1465
                   P GKL+  RVL +      VE++    D+      + + LS    G +   + 
Sbjct: 1365 ALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEE 1419

Query: 1466 KRVESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILK 1515
            ++ E+       E  N       ++  ++ V+            +   R G + +    +
Sbjct: 1420 RKTEAEERDQKGEKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----E 1475

Query: 1516 VDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM 1575
               E+ R+S   K +    + D+L      E  E  EE     +    E  +   +   +
Sbjct: 1476 SGSEQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRL 1531

Query: 1576 ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKK 1635
            +   G +  +       ++PPL  + D E+ +  +  +Q             K ++  ++
Sbjct: 1532 QLSSGFAWNVGLDSLTPALPPLAESSDSEEDEKPHQATQI------------KKSKKERE 1579

Query: 1636 KEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1694
             EK++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKA
Sbjct: 1580 LEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKA 1639

Query: 1695 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1754
            R++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L 
Sbjct: 1640 RAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLH 1697

Query: 1755 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLP 1813
            L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP
Sbjct: 1698 LADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLP 1757

Query: 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1873
              +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R 
Sbjct: 1758 SKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRD 1817

Query: 1874 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1818 IFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1865


>gi|354500197|ref|XP_003512187.1| PREDICTED: protein RRP5 homolog [Cricetulus griseus]
 gi|344252409|gb|EGW08513.1| Protein RRP5-like [Cricetulus griseus]
          Length = 1870

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1894 (29%), Positives = 918/1894 (48%), Gaps = 203/1894 (10%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL- 182
            ++++++  GM++ G V EVNE +LVI LP GL+G  +  +  D      NE    E+ L 
Sbjct: 75   LSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTQKLNEQVTQEEPLE 134

Query: 183  ----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 238
                LP +F  G LV C+V  LD  ++  GK+ + LS+    + K LS E ++  M+LT 
Sbjct: 135  DLLRLPDLFSPGMLVRCVVSSLDITER--GKKSVKLSVNPKHVNKVLSAEALRPRMLLTG 192

Query: 239  YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
             V S+EDHGY++  G+     FL  +   E     N G ++K G  L  +V  +     V
Sbjct: 193  TVSSLEDHGYLVDIGVSGTRAFLSLHKAQEYIRQKNKGANLKIGQYLTCLVDEVKSNGAV 252

Query: 294  VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
            V LS +   +S     + +  +++ L+PG++V  +VQ + E G+ L+FLT+FTG VD  H
Sbjct: 253  VGLSIEHSEISSAFATEEQSWNLNNLLPGLVVKAQVQKVTEFGLQLNFLTFFTGLVDFMH 312

Query: 354  LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
            L+           Y+  + V A IL + P +R V L+L P  L    P + +   ++G +
Sbjct: 313  LE-----PKKIGAYSSKQTVKACILCIHPRTRVVRLSLRPVFLQPGRPLTRISYQQLGAV 367

Query: 411  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
             D+  V    +  G    +    +   AY  +S +++ +     + +K GS  + RI+ +
Sbjct: 368  LDKVPVQGFFKKAGATFRLKDGAL---AYARLSHLSDSKKTFNPEAFKPGSTHKCRIIDY 424

Query: 471  RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
              ++ LA   L+ S       ++ D+K G VVKG V+A+  FG +V+    ++ L P  H
Sbjct: 425  SQMDELALLSLRKSIITAQFLSYHDIKTGTVVKGTVLAIKPFGILVKVGEQMRGLVPSMH 484

Query: 531  MSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
            + +  +  P KK+ +G E+  RVL    ++K++ +T KKTL+ SKL  +  Y +A   L 
Sbjct: 485  LGDIMMKNPEKKYHLGDEVKCRVLLCDPEAKKLIMTLKKTLITSKLPAIMCYEDAKPGLQ 544

Query: 589  THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            THG I +++ +GC V+FYN VQG  P+ EL      +P  +++ GQVVK  +++S P+  
Sbjct: 545  THGVIIRVKSYGCIVKFYNSVQGLVPKHELSDQHIPDPEKVFYTGQVVKVAVLNSEPSKE 604

Query: 649  RINLSFMMKPTRVSEDD----------LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 698
            R+ LSF +      ++D           V +G LV   V   T + + V ++    +   
Sbjct: 605  RLLLSFKLLSDSEPKNDSVEISQKKGRAVNIGQLVDVKVLEKTKDGLEVAILPHN-TPAF 663

Query: 699  IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDA 756
            +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  K +L+++ +  Q P   
Sbjct: 664  LPTPHLSDHVANGPLLHHWLQAGDTLHRVLCLSQGEKHILLCRKPALVSTVEGGQDPKSL 723

Query: 757  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            S I P  ++ G+V +I + G FV+F   L G AP++   D      S  + VGQ+V + +
Sbjct: 724  SEIQPGMLLIGFVKSIKDYGVFVQFPSGLNGLAPKAIMSDKFVTTPSDHFVVGQTVVAKV 783

Query: 817  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS-----SKHNGSELKWVEG 871
             +V+ E  R+ LSL+ S CS  D +      LL + +  LQ      S  +   ++ +  
Sbjct: 784  TNVDEEKQRMLLSLRLSDCSLGDPA-STSFILLCQCLEELQGVRSLMSNQDSVLMQTLAE 842

Query: 872  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
               G V++  V E  + G VV      D+    + +  AG  V SG   +  +L V   +
Sbjct: 843  MTPGMVLDVMVQEVLEDGSVVFSGHVPDLILKASRYHRAGQEVASGQKRRVVVLHVDMLK 902

Query: 932  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 991
              V +SL+   + R           K ++ R++S+  G       IV+ ++E++ V SL 
Sbjct: 903  LEVHVSLRQDLVHR-----------KARKLRKSSRHQG-------IVQHLEESFAVASLM 944

Query: 992  EYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-------- 1042
            E    + ++  S  N T  F  ++   GQ V  T+       T   L+L ++        
Sbjct: 945  ETGQLVAFSLTSHLNDTFHFDSEKLHVGQGVCLTLKTTEPGVTG--LILAVEGPASKRTS 1002

Query: 1043 --AISETETSSSK-----------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 1089
              A  ++ET+  K           R KKK    +G  V   I  +K   + +    G  G
Sbjct: 1003 TPARRDSETADDKEEEEENSDLTVRTKKKHGLAIGDKVTGTIKSVKATHVVVTLEDGIIG 1062

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSI 1140
             IH + + DD   V  +  +  K+G+ VTAR+I     K++K  P     F   + ELSI
Sbjct: 1063 CIHASRILDD-VPVGTSPTTTLKVGEKVTARVIGGRDLKTSKFLPISHPRFVLTILELSI 1121

Query: 1141 KPSML-----TVSEIGSKLLFEECD-VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLF 1192
            +PS L     +     S+   E+ +    GQ VT +   Y    +W  + ++  ++ ++ 
Sbjct: 1122 RPSELKKDGYSALNTHSESPLEKTEQYQAGQTVTCFFKKYNAIKKWLEVDVAPDIRGRIP 1181

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDISND 1251
            +L ++     L+   + F +G+A+   V+  +  K  L L ++ P++             
Sbjct: 1182 LLLTSLSFKVLKHPDKMFQVGQALRATVVGSDVPKAFLCLSLIGPYK------------- 1228

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                 + +G+I  GR+  ++    GL +       G+V    + +      L  +   + 
Sbjct: 1229 -----LEQGEIAMGRVLSVVPN-KGLTISFPFGKVGKVSLFHVSDSYSEALLEDFFPQKI 1282

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            V+C VL     V     + LSLR      SS  + +  + V+ P   +  I+D+    ++
Sbjct: 1283 VRCYVLSTEHHV-----LTLSLR------SSRTNRETKSKVEDP--EINSIQDVKEGQLL 1329

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-----FPIGKLVAGRVLSVE 1426
            +GYVK+V S G  + L   +      S++S      PEKE      P GKLV  +VL V 
Sbjct: 1330 RGYVKSVLSHGVLVELGPSVVGLAQYSHVSQ--CRPPEKELYDSYLPKGKLVTAKVLRVN 1387

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1486
            P   +VE++L  SD+                               LF       L+   
Sbjct: 1388 PERSQVELSLLPSDTGKPD---------------------------LFSASPEPPLLN-- 1418

Query: 1487 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
                  E+  +  +   R GE+ K +  K   +K +    + S   K    + Q   + E
Sbjct: 1419 -----GEERKEGAKERVRKGEEKKSQKRKEKNQKGQEEAELSSQEKKESQRHRQ--GKRE 1471

Query: 1547 SDEAIEEVGSYN----RSSLLENSSVAVQDMDMESED----GGSLVLAQIESRASVPPLE 1598
              E + E    N    +S   E     V+    E ED     G L + +    A VP L+
Sbjct: 1472 RHEPVSEQERVNKRPKKSGTPEEDDSGVEVYYREGEDEMEQPGVLPMGKQTKPAEVPRLQ 1531

Query: 1599 --------VNLDDEQPDM-DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAE 1649
                    V LD   P +   G S +    ++     +K  +  ++ EK++ E+E+   E
Sbjct: 1532 LSSGFVWDVGLDSLTPALPPRGESSDSEEDEKPHQAKKKKGKKERELEKQKAEKELSRIE 1591

Query: 1650 ERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1708
            E L++    P + D+F+RL  S+PNSS +W++YMAF L   ++EKAR++AERAL+TI+ R
Sbjct: 1592 EALMDPGRQPESADDFDRLGLSTPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFR 1651

Query: 1709 EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLA 1768
            EE EKLN+WVA  NLEN YG+  +E+++KVF+RA+QY +P KV L L  +Y ++E+ K A
Sbjct: 1652 EEQEKLNVWVALLNLENMYGS--QESLMKVFERAVQYNEPLKVFLHLADIYTKSEKFKEA 1709

Query: 1769 DELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAIL 1827
             EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +H+  IS+ A L
Sbjct: 1710 GELYSRMLKRFRQEKAVWIKYGAFVLGRSQAGTSHRVLQRALECLPTKEHVDVISKFAQL 1769

Query: 1828 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887
            EF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+
Sbjct: 1770 EFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKR 1829

Query: 1888 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1830 MKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1863


>gi|255082708|ref|XP_002504340.1| predicted protein [Micromonas sp. RCC299]
 gi|226519608|gb|ACO65598.1| predicted protein [Micromonas sp. RCC299]
          Length = 2018

 Score =  640 bits (1651), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 472/1546 (30%), Positives = 778/1546 (50%), Gaps = 177/1546 (11%)

Query: 112  GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGL---ARAADALD 168
            GDG      +Y   +  KN+  GMK+ GVV EVN++ L + LP GL+G    A A+D L 
Sbjct: 68   GDG------KYVELLKYKNLRVGMKVLGVVTEVNDRGLTVSLPNGLKGTVTRAEASDVLA 121

Query: 169  PILDNEIEANEDNL-----------------------LPTIFHVGQLVSCIVLQLDDDKK 205
            P      +  + +                        L ++F VGQ++ C V QL   K 
Sbjct: 122  PASKRGKKGPDGDDPSEASESESESEEEDEDEDERLDLTSMFQVGQILRCKVRQLGKGKS 181

Query: 206  EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRN 264
              G ++I LS RLS +   +S  ++ +GM + A V S+EDHGY+L FG   S TGFLPR 
Sbjct: 182  --GGKRIDLSTRLSQVCSNISGHSLTDGMAVPACVNSVEDHGYVLSFGCSDSPTGFLPRK 239

Query: 265  NLAENSGIDVKPGLLLQGVV-----RSIDRTRK-----VVYLSSDPDTVSKCVTKDLKGI 314
            +  ++    +  G +L  V+     +   R R      V+  ++DP  V++ VT +  G 
Sbjct: 240  SCPQSLVDTLVRGSILDVVIAGDEGKDGKRARSKGPGGVMQCTADPKRVAQAVTHEGDGA 299

Query: 315  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF--PTTNWKNDYNQHKK 372
            ++  L+PGM+V+ RV+++L +G+ ++F+TYFT TVD FH+         +    +   ++
Sbjct: 300  AMSTLLPGMLVNARVKAVLADGLQMNFMTYFTATVDAFHVGGGVHGAAPDPAAAHKTGER 359

Query: 373  VNARILFVDPTSRAVGLTLNPYLLHNRA---PPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
            V AR+L+VD  ++ VGLTL P+L+   A     +  K G I++ + V RVD  +G+LL++
Sbjct: 360  VRARVLYVDAAAKRVGLTLRPHLVTLEASVRAGAMPKPGTIFETAVVRRVDTAIGVLLEL 419

Query: 430  PSTPVS---TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
             S   +   T  Y  ISD A+E + KLEK++K G  VR R++G R ++ +AT   K++  
Sbjct: 420  KSENENVHPTFGYCHISDAADEHLDKLEKRFKVGKKVRARVIGSRAMDSVATVSCKSTVL 479

Query: 487  EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
            +    +  ++ PGM V+G+V+AV+ +GA+V+   GVKALCP  H+S+        K K G
Sbjct: 480  DQPFLSLEELVPGMQVRGEVVAVEPYGAVVKLAPGVKALCPPNHISDIPGRVTNAKVKEG 539

Query: 547  AELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
                FRV+ V     R  VTHKK L++S+L +++S  +AT    THG +T +E +G FV+
Sbjct: 540  LSAKFRVVSVDRVKGRAVVTHKKQLIRSELPVVASLDDATPGTTTHGVVTGVEPYGVFVQ 599

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
             Y  ++G A   +LGL     P   + VGQVV+  ++ S    ++I LS        + +
Sbjct: 600  LYGNLRGLAGLQDLGLAADQTPQEAFAVGQVVRATVIRSDRGEQKIKLSLAPGGAVANGN 659

Query: 665  DL------------VKLGSLVSGV----VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
            DL             + G++V       VD  T N   V V   G   G +    ++DH 
Sbjct: 660  DLDGTPGEKGDVGAPEPGTVVESATVKRVDEATGN---VQVTLPGGVPGVVTAAQMSDHP 716

Query: 709  EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVH 766
                 +     PG E   L+ L+ +    +LS K SL+ +A+   LP D S +   ++  
Sbjct: 717  LTGAGLSQAFAPGDEIGPLVALEAKPRRSILSRKASLVEAARGGTLPEDISGVVVGAIYP 776

Query: 767  GYVCN-IIETGCFVRFLGRLTGFAPRSKAVDGQRA---DLSKTYYVGQSVRSNILDVNS- 821
            GYV +     G FVRFLGRLTG AP S+  D   A   D  + + +GQ+V + ++ V++ 
Sbjct: 777  GYVASATANAGVFVRFLGRLTGLAPPSQLTDVPVAGGVDPEEMFALGQTVLARVVSVDAT 836

Query: 822  -ETGRITLSL-----KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI-- 873
             E  R++LSL       S   + +A  ++  F  +  +A   + +   S  +  EGF+  
Sbjct: 837  VEPPRLSLSLAPRGVAASSGVTAEAPLIRSIF-TDVDVADRLADERAASGGEAPEGFLTA 895

Query: 874  -------IGSVIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVES--------G 917
                   +G  I+G VH   ++GV+V   +   D  G +  HQL  A  ++        G
Sbjct: 896  AANEKLKVGEEIKGVVHAVREYGVLVDMPDVDPDAVGLVAFHQLPNANGDNEEPKHPAEG 955

Query: 918  SVIQAAILDVAKAERLVDLSLKTVFID-----RFREANSNRQAQKKKRKREASKDLGVHQ 972
              I   +LDV++ E +VD+  +          +  +A +  + +K+K  +  +  L +  
Sbjct: 956  EKITGRVLDVSRREGVVDIGARPSLTGAKVGKKGAKALTTAELKKRKAAQAGAHKLEIGS 1015

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVS----DYNTQKFPQKQFLNGQSVIATVMAL 1028
             V A VE+VK  Y VLSLP++  +I YASV+     +N  +   ++F  G+ V A V   
Sbjct: 1016 KVTAEVELVKPEYAVLSLPDHGGAIAYASVNLLNRRFNEDEVETERFAVGRKVTAFVAGN 1075

Query: 1029 PSSSTAG-RLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 1087
             +S + G RLLL + A    + + S  A   S+   G  ++  + E++ ++  L    G 
Sbjct: 1076 AASGSPGDRLLLTVPAAKSNKGAGSGEA---SAVGAGLAMEGVVKEVQSMQAILTLPNGR 1132

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1147
             GR+H TE       + E  F   KI    T  ++  +  P   +  + EL+++ S+   
Sbjct: 1133 KGRLHATE-------LAEGAFPMKKIAVGATLNVV--TLGPAGDRGNMLELTVRRSVEES 1183

Query: 1148 SEIGSKLLFEE---------------CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
             EI                         +S G  + G V  V  +   + ++  L A++ 
Sbjct: 1184 REIARAATDAGGGDGSGAGIAGTAALATLSEGDEIDGIVSAVSADTLAIAVAPGLTARVP 1243

Query: 1193 ILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
             +++    + L++    RF +G+ V    L+ +  +K + + LR         + D  N 
Sbjct: 1244 KIETGDSIAALRKALTSRFTVGERVKMTALAADVARKKIIVTLR---------SADKRN- 1293

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                 + EG  + G +SKI  G GG+ VQ+    +GRVH T++ +   S+P   +  G+ 
Sbjct: 1294 -----VVEGAKIAGIVSKIAPGGGGVFVQLNSRQHGRVHVTDIADDPRSEPWKLHSVGEA 1348

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            V+ +VL +         V+LS++SS   + S  SS+           +  +  L+P   V
Sbjct: 1349 VEVRVLGVGE----GGEVDLSMKSS--ALKSKGSSN----------GISSVSQLAPGAHV 1392

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G+VK V   GCF+ +SR +DA+V + NL+D +V  P +EFP GKLV G +LSV+  S R
Sbjct: 1393 SGFVKQVNKGGCFVAISRSVDARVKMCNLADTFVSDPAQEFPKGKLVKGTILSVDESSGR 1452

Query: 1432 VEVTLKTSD-SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
             E+TL++      A +S+I+N +++  G + +G ++RV++YG+F+T++ +   GLCH+S 
Sbjct: 1453 AEMTLRSDGMDAAAGRSQIDNNAHVEEGSVQMGTVRRVQTYGVFVTLDGSGRSGLCHISM 1512

Query: 1491 LSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1535
             ++  + D++E   RAGE+V+VK+L+VD+E  +ISLGMK S F +D
Sbjct: 1513 FADARIKDSLEQHVRAGERVRVKVLQVDEETGKISLGMKPSLFADD 1558


>gi|412992671|emb|CCO18651.1| predicted protein [Bathycoccus prasinos]
          Length = 2077

 Score =  617 bits (1591), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 470/1591 (29%), Positives = 795/1591 (49%), Gaps = 220/1591 (13%)

Query: 112  GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL 171
            G G SGK   Y   +  K +  G+KL G+V+ V+ K L++ L  GL+G    ++A D   
Sbjct: 125  GKGSSGK---YIEALKWKTLRRGVKLLGIVSHVSNKGLIVSLQNGLKGTVSKSEASDAFY 181

Query: 172  DNEIEANEDNL---------------------------------------------LPTI 186
                  N+D +                                             L ++
Sbjct: 182  IT----NKDRVKRKSKKKPSSYSSSEEEFSSSSSSSEESSGEEEEEEDGGKKAKIGLESL 237

Query: 187  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 246
            FHVGQ+V C V+ LD+ K   G ++I L+LRLS +  GL  E + EG  + A V S+EDH
Sbjct: 238  FHVGQIVRCAVVNLDEGK--TGGKRIELTLRLSQVCAGLDKECLTEGAAIPAVVTSVEDH 295

Query: 247  GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVV------------------RSID 288
            GYI+ FG+   TGFL R++ A +    +  G L++ V+                  R   
Sbjct: 296  GYIVEFGIDGSTGFLSRDS-AGDEHDSLLTGQLIEVVIALTPKAKKDINNNKKKNGRGSK 354

Query: 289  RTRKVVY-LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
                 VY +S+D    S  +  + K   I  ++PGM+V  RV+S+LE+G+ +SF+TYF+G
Sbjct: 355  LGESNVYKVSADTKRCSSAIALENKSTLISTILPGMLVKARVKSVLEDGISVSFMTYFSG 414

Query: 348  TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV-K 406
            T+D FH+     T+     + + +K+ +R++FVD  ++ VGL+L P+LL  R+P S +  
Sbjct: 415  TIDCFHIAAEDTTS-----FKEGQKLRSRVIFVDAQNKRVGLSLQPHLLEARSPASILPS 469

Query: 407  VGDIYDQSKVVRVDRGLGLLLDIP--STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 464
             G I++ + + RVD  +G+ L I       S   Y  +S ++++ V K+EKKYK G  V+
Sbjct: 470  TGSIFENAMINRVDPNVGVSLQISQGGKTRSVAGYAHVSHLSDDHVEKIEKKYKVGKQVK 529

Query: 465  VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
            VR++G R L+ +A   LK S  E   F+  ++ PGM+VKG+V+A + FGAIV+   GVKA
Sbjct: 530  VRVIGHRLLDAVANVSLKRSVLEQPFFSLEELVPGMIVKGEVLATEHFGAIVKLAEGVKA 589

Query: 525  LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAE 582
            LCP  H+S+        K   GA L FRV+ V     R  VTHK+ L+KS+L +L +  +
Sbjct: 590  LCPPIHVSDIVGRTTSSKVTPGAILKFRVISVDRSRHRAIVTHKRALIKSELPVLKTIED 649

Query: 583  ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
            A     THG I+ +  +G FV  Y  ++G A   +LGL  G   +  Y VGQV++  I+S
Sbjct: 650  AIPGRTTHGIISGVVDYGVFVTLYGNLKGLAGSQDLGLAEGQSIADAYAVGQVIRTTIVS 709

Query: 643  SIPASRRINLSFMMKPTRVSEDDLVKLGS--------------------------LVSGV 676
            +     ++ LS  +     +EDD    G+                            S  
Sbjct: 710  ADRGENKLRLS--LGGGGGNEDDNAAEGAEATVGAAAAAAAAISLSTDAVPIGKVFASAT 767

Query: 677  VDVVTPNAVVVYVIA---KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF-DQLLVLDN 732
            +  +   + ++ V +   +G  +G +  +HL+D+   A  M S +K G       +V++ 
Sbjct: 768  ITKIVQGSSIIEVTSSTEEGSFQGLVAFQHLSDNPVTALSMASTLKVGEVLPGAFVVIER 827

Query: 733  ESSNLLLSAKYSLIN--SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
            +   +++S K S+I   ++  LP  A  +    +  GYV +   TG FVRFLG LTG AP
Sbjct: 828  KPKRVVMSRKLSIIEAVTSSSLPDRADKVKAGKIYPGYVASTSSTGVFVRFLGSLTGLAP 887

Query: 791  RSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSLKQSCCSS--TDASFMQEH 846
             S+  DG  A  + +++VGQ+V++ +L V+ E    R++LSL+    +   +DA  ++  
Sbjct: 888  PSQIPDGCNA--TDSFFVGQTVQAMVLSVDVECVPPRLSLSLRLQTTAQPLSDAPLIRSF 945

Query: 847  F----LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG 902
            F     L+ K+A            K V  F  G  IEG ++E+ D+GV++  +E  +  G
Sbjct: 946  FADLEFLDFKVAQDPKEAETLLSEKTVRMFEPGCDIEGSINETKDYGVLIDIDEDENAVG 1005

Query: 903  FITHHQLAGAT----VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
             ++ HQ+  +         + +   +LDV++ E ++D+   +V  ++       ++ +  
Sbjct: 1006 LVSPHQVPESVEIEEFTPETRLSGRVLDVSRREGVIDIGKVSVVTEKNLSKKKKKKVKSA 1065

Query: 959  KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ-KFPQKQFLN 1017
                   K L V +   AIVE++K  Y++LSLP+Y+ +IGYA V   N +     ++F  
Sbjct: 1066 SAAL---KKLKVGEATEAIVELIKAQYVILSLPKYSDAIGYAPVHYCNVRLNDASERFEV 1122

Query: 1018 GQSVIATVMALPSSST----------AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLV 1067
             Q V   +  +PS+S+          + RLLL +  +   +++S  +        VG+  
Sbjct: 1123 NQRVNVVIAQVPSASSPDDVKGDEFYSNRLLLTVPYVDTNKSNSGPK--------VGTKF 1174

Query: 1068 QAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 1127
            Q  ++E++PL+  +       GRIHITE      +          +G TV   ++  +  
Sbjct: 1175 QGVVSELQPLQALVSLPNSKKGRIHITETGAFAKSKFP--LEELSLGLTVNVAVLGMAG- 1231

Query: 1128 PDMKKSFLWELSIKPSMLTVSE-----IGSKLLFEECDVS------------IGQRVTGY 1170
                +  L +L+++ S     +       +K   ++ D +            +GQ +  Y
Sbjct: 1232 ---DRGGLLDLTLRSSADEDKDDENVNKNAKNGNDDFDATASLKRPTLQTLEVGQSIHAY 1288

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKL 1229
            V  V  +   + I   + A + ++++A    EL++  ++RF  G+ +   ++++N     
Sbjct: 1289 VISVLPDGVKVCIRPEITAFVPLIETASSIKELKKPLEKRFSKGEKIKATIVNVN----- 1343

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
                       +S K VD+S  + Q  +  G  V G IS+   G   ++V++G H+ GRV
Sbjct: 1344 -----------VSKKHVDVSFRD-QNSVSVGAKVFGIISRFNKGT-SMMVRLGAHVTGRV 1390

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCK----VLEISRTVRGTFHVELSLRSSLDGMSSTNS 1345
              T+     VSD    + E  F + K    V     +++ +  V+LS+R SL   S    
Sbjct: 1391 FLTD-----VSDE---FQEKPFSEMKVGNVVEVRVVSMKSSGEVDLSMRPSLLSKSGEKK 1442

Query: 1346 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1405
             +++       K+LE  +++S      GYVK+V   GCF+ LSR +DA + L+NL+DG+V
Sbjct: 1443 KNVANPEINDAKNLEVGKEVS------GYVKSVGKSGCFVALSRNVDALIKLTNLADGFV 1496

Query: 1406 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIG 1463
              P  EFP G+L+ GR+LS +  + RVE++L+   SDS+T ++  +   ++L VGD+V+G
Sbjct: 1497 VKPSVEFPTGRLIRGRILSADAKTNRVEMSLRASQSDSKTPNKEAV---ASLKVGDVVMG 1553

Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRR 1522
             ++ V+SYG+F+T++ + + GLCH+S  ++ HV D++    RAGE+V+ KI+KVD E  +
Sbjct: 1554 TVRSVQSYGVFVTLDESGISGLCHISMFADMHVKDDLANHVRAGERVRAKIMKVDYETSK 1613

Query: 1523 ISLGMKSSYFKNDADNLQMSSEEESDEAIEE 1553
            +SLG+K+S F +D D++   ++ E D   E+
Sbjct: 1614 VSLGIKASVFGDDDDDIDNGAQREGDSEDED 1644



 Score =  314 bits (805), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 155/330 (46%), Positives = 227/330 (68%), Gaps = 8/330 (2%)

Query: 1602 DDEQPDMDNGISQNQGHTDEAKTIDEKNN-----RHAKKKEKEEREQEIRAAEERLL-EK 1655
            D+E+ +    ++  +   +E+  ++E  N     + AK+++  E E EI   E++L  E 
Sbjct: 1742 DEEEKEQKQKLNAMKRSREESTHLEEGENANKLSKRAKRRKAREVEMEILRQEQQLRDEG 1801

Query: 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1715
              P +  E+E+L+ +SP SSF+WI+Y+AF +S+   E AR++AERAL+ I  +EE+E++N
Sbjct: 1802 RLPESASEYEKLILASPLSSFLWIQYVAFQVSVGAYEDARAVAERALEAIPAQEEDERMN 1861

Query: 1716 IWVAYFNLENEYGNP-PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1774
            IW+AY NLEN +G P P+EAV ++F+RA+   DPKK++L L+ +Y R EQ ++ +E L  
Sbjct: 1862 IWIAYLNLENSHGLPNPKEAVSRLFKRAVNLADPKKLYLVLVDMYTRAEQIEILEETLKL 1921

Query: 1775 MIKKFKHSCKVWLRRVQRL-LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833
            ++KKF+ SCKVWL  ++ + LK   EG + ++ RA  SLP+ KHIK + + A+LE K G 
Sbjct: 1922 IVKKFRSSCKVWLTYIRHVTLKGDAEGSRKLLDRATTSLPKRKHIKLLVKVALLEMKEGD 1981

Query: 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1893
             +RGR+MFEGIL  YPKRTD+WS+Y+DQEI+    + IR LFERA  L L  + MKFLFK
Sbjct: 1982 PERGRTMFEGILRNYPKRTDIWSVYIDQEIKQNIPERIRALFERATHLELNARSMKFLFK 2041

Query: 1894 KYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
            +YLEYE+S G  ER+ YVK +AMEYVE TL
Sbjct: 2042 RYLEYERSHGNTERMTYVKARAMEYVERTL 2071


>gi|325180379|emb|CCA14782.1| rRNA biogenesis protein rrp5 putative [Albugo laibachii Nc14]
          Length = 1939

 Score =  609 bits (1571), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 576/2031 (28%), Positives = 960/2031 (47%), Gaps = 257/2031 (12%)

Query: 29   NSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKK 88
            +SKK+ +D +E Q+ A  P  D+ +F   G   +TQ   D       +  E+       K
Sbjct: 28   HSKKRNHDRMEQQEEA--PKHDL-LF---GSKGITQANSDSTSKRSKSTSES-------K 74

Query: 89   NKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKD 148
             K+ K  T+  ANE             S  +   A  I  K+I + M L G++ ++ E  
Sbjct: 75   PKRVKPNTKHAANENCTQ---------SHLVNEKATTINFKSIKSNMLLLGLIRDITETG 125

Query: 149  LVICLPGGLRGLARAADALDPIL------------DNEIEANEDNLLPTIFHVGQLVSCI 196
            L+I LP  L G     +  D               ++ I+A++   L  IF + Q V C+
Sbjct: 126  LLISLPSKLNGFVPMEECSDEFYHHLHASSSSSGPNSTIKASKLAPLNAIFSINQYVPCM 185

Query: 197  VLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
            VL    D K  GK  + LS+RLSLL+   +   V++ M +   ++S+ED G +++ G+  
Sbjct: 186  VLNKSKDDK--GKHLV-LSMRLSLLHAEYTPNCVKKSMTMYGTIQSMEDQGAVINLGIRG 242

Query: 257  FTGFLPRNNLAENSGIDVKPGLLLQG-----VVRSIDRTRKVVYLSSDPDTVSKCVTKDL 311
               F P++ L      D +   +L G      V +++     V LS   +   K VT+  
Sbjct: 243  MHAFAPKSQLLAACPEDPECASMLMGRQFLFTVLNVNPHTSTVTLSPARNHTIKAVTRG- 301

Query: 312  KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD-------IFHLQNTFPTTNWK 364
              +++  L+PG++++ RV+ ++ NG+ ++FLT+F GTVD       IFH   T     W 
Sbjct: 302  DHLTVKHLLPGLLLNVRVEQVVSNGLFVNFLTFFHGTVDYNHVSRLIFH-DETEDMKTWT 360

Query: 365  NDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP--PSHVKVGDIYDQSKVVRVDRG 422
              + +  K  ARI+ VD   + + L++ P+++H   P     + VG   D + + R+D G
Sbjct: 361  LMFKKGIKSRARIIGVDRAEKKIMLSMAPHIVHLDHPFDAHSMPVGSSIDSATIERIDPG 420

Query: 423  LGLLLDIP---STPVST---PAYVTISDVAEEEVRK-LEKKYKEGSCVRVRILGFRHLEG 475
            +G+LL +P    TP      PAYV IS+V++  V K L+KKY  G  +R R++G    + 
Sbjct: 421  IGMLLSLPLFEETPSKNSKLPAYVHISNVSDAHVDKHLDKKYTIGDKMRCRVIGSASFDN 480

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
            + T   K S+    V  H D+ PG  V  K++ +  +G +++   GV+ L  + H+    
Sbjct: 481  IVTVSCKESSLSQTVLRHCDLAPGQHVNAKILVMKEWGVLLEISEGVRGLVTMQHVPSII 540

Query: 536  IVKPGK------KFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRL 587
              K  K      KF+ G  +  +VL V +  K+  +T K+ L++S+  IL+SY +A + L
Sbjct: 541  ASKLTKSKDAIGKFQQGRMVDAQVLHVDTAAKKTFLTMKRALMESQFPILASY-KAENGL 599

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQVVKCRIMSSIPA 646
            +T G+ITKI   G  V FY GV G  P S L    G E     Y +GQVV+ RI      
Sbjct: 600  VTMGYITKIAPFGVIVSFYGGVHGLVPASTLH-QAGIECFEDAYTLGQVVRARITYCDTE 658

Query: 647  SRRINLSF--MMKPTRV-SEDDLVKLGSLVSGVV--DVVTPNAVVVYVIAKGYSKGTIPT 701
             +R+ LS      PT V S+D L+  GS++  VV  D+     VV      G   G +  
Sbjct: 659  KQRLLLSLNTTSTPTEVDSKDSLI--GSILCDVVVTDIDMEEHVVRVKTPLGLI-GNVSF 715

Query: 702  EHLADHLEH--------ATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQL 752
             HL D   H        A++ K  I  G EF   LVL   +  +L LS K  L     ++
Sbjct: 716  VHLTDFPRHSFLIDLILASIRKDEIWAGQEF---LVLSQSTDRVLELSRKPMLTRHISKI 772

Query: 753  PSDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVG 809
            P     +   S + G+V  I  E G FV FL  LTGFA +S  VD +   +  S  + VG
Sbjct: 773  PQSIDSVSEKSKLFGFVAAIEPEKGVFVEFLNHLTGFAHKS-LVDEKFVQVISSDAFQVG 831

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML-QSSKHNGSELKW 868
            ++V  ++L+   + G+ T+             F   HF LE   +   + S+   +E   
Sbjct: 832  ETVVCSVLN-KLQGGKFTVD------------FRARHFTLEHFPSYFAEWSRQVYTETNA 878

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 928
             +GF +G  + G+      +G V S E+ SD    +    L    +E  S     ++   
Sbjct: 879  YQGFPVGLAVNGEFVAKRSYGSVFSIED-SDFQASV----LVRDGIEMDSTSSQKLV--- 930

Query: 929  KAERLVDLSL-KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK--ENY 985
                LVD  + K V+     E  + R    K+R R   + L + Q ++A V  +   E Y
Sbjct: 931  ----LVDFDVEKKVYFGILDEKLA-RSCTLKRRSR--WERLAIDQNLDARVLAIGTLEQY 983

Query: 986  LVLSLPEYNHS-IGYASVSDY--NTQKFPQKQFLNGQSVIATVMALPSSS----TAGRLL 1038
             V++L     S IG   +SD+     K  ++       V+AT +     S    T    L
Sbjct: 984  AVVALNVGKRSQIGVVQLSDFWRPLSKCIEEDTRIKCRVVATCLRDTRDSDVIPTPFEEL 1043

Query: 1039 LLLKAISETE------------TSSSKRAKKKSSYDVGSLVQAEITEIKP--LELRLKFG 1084
             LL+   + E             S  +       + VG LV   I  IK   +E++LK  
Sbjct: 1044 PLLRVCDDHEHRQKPARLLRDAVSMPRYKHPAEEFQVGKLVTGRIATIKQDGMEIKLK-A 1102

Query: 1085 IGFHGRI----HITEVNDDKSNVVENLFSNFKIGQTVTARII------AKSNKPDMKKS- 1133
                G++     I +V+ D++    +    +     VT RI+      A   KP  + + 
Sbjct: 1103 TKQCGKVVAMVSIIDVDADENET--HPLDQYAPKMAVTGRILTIMQKGANQRKPVSESNP 1160

Query: 1134 ---FLWELSIKPSMLTVSEI------------GSKLLFEECDVSIGQRVTGYVYKVDNEW 1178
                + +LS++   ++  E+            GSKLL      ++G  + G V +    W
Sbjct: 1161 ATFHILQLSLRQQDISSDEMEHLRADWGLENKGSKLL------TVGNVLEGVVVE-QKAW 1213

Query: 1179 ALLT-ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG-HVLSINKEKKLLRL-VLR 1235
             LL  +S  +   L  ++ + E S L+ F   + +GK V G H++S++  ++ + L ++ 
Sbjct: 1214 GLLIRLSHRVVGFLHCMEISTELSVLERFHELYPVGKRVNGCHIVSVDHAERRVDLSLIH 1273

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
              ++GI++        N+Q       +V     K       L++Q+  + +GRV  TEL+
Sbjct: 1274 ESKEGITE--------NLQVGNKVIGVVLDSSKKAPFRPPSLMLQLSAYTFGRVCVTELR 1325

Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1355
            +     P +   +       +L+ S+   G F V   L +  D    T  SD        
Sbjct: 1326 S-----PTNWTSQ-------MLQESQFKPGKFLVGTLLSAQKDVWEVTLRSD-------- 1365

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
             +  E         +V G + + +S GCF+ ++  L  +VLL +LSD ++  P  EFP+G
Sbjct: 1366 -RQDESYSTYEIGNLVTGIIASTSSMGCFVRINHLLTIRVLLRDLSDNFINDPISEFPVG 1424

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1475
            K+VAGR+ + +     V  ++    S  +       ++NL  G IV G++ +++SYG+F+
Sbjct: 1425 KVVAGRITAKQVTQDAVLYSMSLKPSIVSDGIASLTMTNLKEGMIVTGKVSKIQSYGVFV 1484

Query: 1476 TIENTNLVGLCHVSELSEDHVDN-IETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
             +  +NL GLCH+SE+ E+ +   +  +++ G+ VK K+LKV  E  RISLG K +YF +
Sbjct: 1485 RLNQSNLSGLCHISEIGEERIQKPLTELFKEGDSVKAKVLKV--ENGRISLGFKLAYFDD 1542

Query: 1535 DAD--NLQMSSEEESDEAIEEV-GSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESR 1591
            D +  N++   ++ SD+ ++         +  E+ S +V  ++ ++    S+ +   E  
Sbjct: 1543 DIESANIETIDQQRSDDEVQRPEADETSEAQSESESESVNAVEADNTQAVSMEVDT-EEE 1601

Query: 1592 ASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEER 1651
              VP +    D+ +       S+ +      K++  +N     +     RE+E+  +E+ 
Sbjct: 1602 EDVPAVGFQWDEFEA------SKEESPKAVVKSVCGRNPLWMDEGSVAIREKELALSEQE 1655

Query: 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1711
                  P+   +FERL+   P  +++WI+YMAF +S+ +V+ AR +A RA + I  R+E 
Sbjct: 1656 ------PQCAQDFERLLTIHPQDAYLWIRYMAFHISLQEVQLARDVAMRATRMIAFRDEK 1709

Query: 1712 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1771
            EKLN+W+AY NLE+++G+   E+  +V   A+Q   PK ++L L+ LY R+ Q+    E+
Sbjct: 1710 EKLNVWIAYLNLEHDFGDA--ESFQRVLHSAIQVNPPKSIYLHLVDLYVRSNQHANVLEV 1767

Query: 1772 LYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFISQTAILEF 1829
            L  M KKFK S  VW+R ++  + +  + V+A  V+  AL  LP  KH+  + +  +  +
Sbjct: 1768 LSTMQKKFKTSRAVWIRALRYFVLENSDHVKAAHVISSALKYLPGVKHVDILVKYGLFLY 1827

Query: 1830 ---------KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG--------DVDLIR 1872
                     +N + ++ R++ EG+L+ YPKR DLW++Y D+EIRL         D D IR
Sbjct: 1828 DPRAGKDKSRNAI-EKARTVLEGVLATYPKRMDLWNVYADKEIRLCKDTNCTDEDRDRIR 1886

Query: 1873 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
             LFER +++    KKMKF FKKY+ +E++ G++  +E+VKQ A  YVE  +
Sbjct: 1887 QLFERLLAMKFSTKKMKFWFKKYISFEQTFGDQAHVEHVKQLAKSYVEHAM 1937


>gi|302845196|ref|XP_002954137.1| rRNA processing protein Rrp5/programmed cell death protein 11 [Volvox
            carteri f. nagariensis]
 gi|300260636|gb|EFJ44854.1| rRNA processing protein Rrp5/programmed cell death protein 11 [Volvox
            carteri f. nagariensis]
          Length = 2192

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 476/1696 (28%), Positives = 810/1696 (47%), Gaps = 225/1696 (13%)

Query: 3    ASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSL 62
            A  +  +K+ S  G   ++    Q K   +++ +       A+  +D    FPRGG  +L
Sbjct: 2    AGQQSQKKRRSAGGAVPHEQEAPQAKRPNQRLEEPTR-NPFAVKEED----FPRGGADTL 56

Query: 63   TQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRY 122
            T  ER E+      E E  E    K+ K KK +  ++ +E  D         + GKL ++
Sbjct: 57   TALERRELTEAARREVEQ-ELADGKQPKSKKARLSKQEDEE-DTFFRKHAAAVEGKLAKH 114

Query: 123  ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA---RAADALDPILDNE----- 174
             + + +K++ AG ++WG+V EV  + LV+ L  GLRG     +A+D L  +L  +     
Sbjct: 115  VDLLRVKDLHAGTRVWGMVLEVTPRGLVVSLAHGLRGYVAPNQASDVLALMLKAQKTAAA 174

Query: 175  -----------------IEANEDNLLPT--IFHVGQLVSCIVLQLDDDKKEIGKRK---I 212
                             +EA    + P   +F VGQ V  +V++    +   G R    +
Sbjct: 175  AAAGDRGDVARKKGAALLEAAGGVVPPLTDLFVVGQFVRGVVMEAPTGEDTGGGRSAKHV 234

Query: 213  WLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE--NS 270
             LSL L  +  GL  E V EG+ L A V+S+EDHGY L FG+   +GFL + +       
Sbjct: 235  ALSLLLRDVQGGLGSEAVAEGLALGAVVRSVEDHGYTLSFGIKGTSGFLRKKDHEAQFGE 294

Query: 271  GIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRV 329
            G+ ++ G L+  VVR+    R V+ +S  P  V+  VT++ +G+S +  ++PG +++ +V
Sbjct: 295  GVALQVGGLIDVVVRNAADKRNVL-VSCAPGDVAAAVTREAEGMSGLGAVLPGALLNVKV 353

Query: 330  QSILENGVMLSFLTYFTGTVDIFHLQNTFPTT------------NWKNDYNQHKKVNARI 377
            + +L NG+++SFLT+F GTVD++HL                   +W+  Y +  K+ AR+
Sbjct: 354  RKVLSNGLLVSFLTFFHGTVDLYHLPAASAAAAAAATGGAAGSKDWRKLYPEGTKLRARL 413

Query: 378  LFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDR--GLGLLL---DIPST 432
            L+ D   +  GL+L P+L     P     +G ++ +++VVR+D   G GLLL    +P  
Sbjct: 414  LYADLVRKRAGLSLLPHLAAQTLPSPVPVLGSVFPEAEVVRLDAAGGPGLLLRMEGLPEG 473

Query: 433  PVSTPAYVTISD------VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
            PV+   Y  +S+      VA+E V  + +KYK G+ +  R++G+R L+G+A+  ++ S  
Sbjct: 474  PVA--GYCHVSNALEEKKVAKEAVAAMAEKYKVGTKLPARVIGYRLLDGMASVTVRPSQV 531

Query: 487  EGLVFTHSDVKPGMVVKGKVIAV---DSFGA-IVQFPGGVKALCPLPHMSEF---EIVKP 539
               V + +D+ PGM+V G VI+V   D  G  +VQ   GVK L P  H SE         
Sbjct: 532  NAAVLSFTDLTPGMLVAGTVISVPDRDGDGPLLVQIAEGVKGLVPPLHASELTGAAAAAA 591

Query: 540  GK--------KFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
            GK        K KVG  +  RVL +   ++++T+T +K  + +K A L S A+A      
Sbjct: 592  GKTSGGKRRIKVKVGDRVEARVLDLDLGARKVTLTLRKAFLATKAAPLVSAAQAVPGSRF 651

Query: 590  HGWITKI-EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            HG +T + ++ G FV F++G+ G A   +LGL+PG +    + +GQVV+  I+S+  A  
Sbjct: 652  HGMVTGLHDRLGVFVSFFSGLSGLASHDDLGLEPGQDVKEAFGIGQVVRATILST--AGG 709

Query: 649  RI-------------------------NLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVT 681
            RI                         +L   ++P  ++E  ++K+  G          T
Sbjct: 710  RIKLSLASKSAAAEAAAAAASNGISTPDLLGGLQPGDIAEAVVLKVHNGGEGGDAASSAT 769

Query: 682  PNAVVVYVIAKGYSKGTIP--------TEHLADHLEHATVMKSVIKPGYEFDQLLVLDN- 732
            P              G++P          HL+DH       ++V++PG +  +++VL+  
Sbjct: 770  PFYTCRLERPGVSGGGSVPLGVRARLEVPHLSDHPAALEAFRAVVRPGTKLGRVVVLERL 829

Query: 733  ESSNLL-LSAKYSLI--NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
            E++  + +S K SL+   +A +LP     +   +V+ GYV ++     +VRFLG LTG A
Sbjct: 830  EAARCVRVSRKPSLLAAGAAGRLPRRFEEVVEGAVLPGYVASVTPDAVYVRFLGGLTGRA 889

Query: 790  PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLL 849
               +  D   ++    +  GQSVR+ +   ++   R TL L+ S  +STD +F+ ++F  
Sbjct: 890  GLPQLSDVFVSEPRLLFAEGQSVRAQVAVCDAARQRFTLMLRPSVTASTDGAFLLDYFKE 949

Query: 850  EEKIAMLQSSKHNG-------------------------SELKWVEGFIIGSVIEGKVHE 884
             +++  L++                              ++L     F +G +   +VHE
Sbjct: 950  MQQLQALRAEAEAEPGGGGGGGDGAAGNGAANGGSAAPPADLDPARVFPLGGLAAARVHE 1009

Query: 885  SNDFGVVVSFEEHSDVYGFI--THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF 942
              ++G+V   +EH DV G +  +H    G +   G+ ++  +LDV   + LV+LSLK   
Sbjct: 1010 VKEYGIVCDMDEHPDVVGLVPSSHAGALGPSPAVGTRVRGRVLDVVGHQGLVELSLKPGM 1069

Query: 943  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN-YLVLSLPEYNHSIGYAS 1001
            +    +  + R A ++ +        GV   V A+VE ++   YL+LSLP+++ ++ YA+
Sbjct: 1070 VAAAEDGAAGRAAARQLKP-------GV--AVEAVVEGIRPGEYLILSLPQHSAALAYAA 1120

Query: 1002 VSDYNTQK--FPQKQFLNGQSVIATVMALPSSSTAGRLL----LLLKAISETETSSSKRA 1055
            V+DYNT +     + F  GQ + ATV A P  +  GR++    L           ++   
Sbjct: 1121 VTDYNTPRPDLVPRTFTVGQRLTATVAATPPDAPLGRIVCHVPLTRIGGGAGGKGAAASG 1180

Query: 1056 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
             KK + D GS+V+A +T I+P +L +                            +   G+
Sbjct: 1181 GKKVTLDPGSVVEAVVTGIQPYQLDV----------------------------SVCGGK 1212

Query: 1116 TVTARIIAK-SNKPDMKKSFLWELSIKPSMLTVSEIGSKLL--FEECDVSIGQRVTGYVY 1172
            TV A ++ +       +   +W+LS++PS L  ++ G   +       ++ GQ++  +V 
Sbjct: 1213 TVEAVVLGRLQTGEGHRPGSVWDLSLRPSRLAKAKKGEPPVPSVTLSSLAPGQQLPCFVL 1272

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
            +V  +   L     ++ ++  LD++ +P  L +    F  G  V   VL++++++  L L
Sbjct: 1273 EVAEDALWLGAGPAVRGRVAALDASLDPDVLTDLSSTFPPGTVVLARVLAVSRKRNSLDL 1332

Query: 1233 VLRPFQDGISDKTVDISNDNMQT---FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
             L     G +  +V        T      EG +V GRI  + +  GG+ V IG    G V
Sbjct: 1333 SLIDPCSGTTRGSVAGGGAAATTAAPLPPEGALVMGRI--LAANGGGVRVSIGHRRAGSV 1390

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
              T++ +  V D  +G  EG +V+ +VL       G F V LSLR S  G  + +   ++
Sbjct: 1391 ALTDIYDEWVPDARAGLREGAYVRVRVLGRD----GDFAV-LSLRPSRGGAVAGSKPSVT 1445

Query: 1350 T------------DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1397
                                 L   + L     V GYVK   +KG F+ L R  D  + L
Sbjct: 1446 AAGSKKQGGSSSSATAAAAPELISADSLKVGATVTGYVKRCDAKGLFLALDRFRDGHIKL 1505

Query: 1398 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS--EINNLSNL 1455
             NLSDG++E P   FP G  +  RVL V     R+E+TL+++  +T+  +   + +LS L
Sbjct: 1506 VNLSDGFIEDPAAAFPAGMQLEARVLRVGE-GGRIELTLRSATRQTSGSAAPAVQSLSEL 1564

Query: 1456 HVGDIVIGQIKRVESYGLFITI-ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
              G +V G+++RVE +G+F+ +  N  LVGL H+SEL++  V +I +++++ + V+  + 
Sbjct: 1565 RPGQLVSGRVRRVERFGVFVEVGGNPGLVGLAHISELADGPVKDINSVFKSKQLVRAVVT 1624

Query: 1515 KVDKEKRRISLGMKSS 1530
            KVD E  R+SL MK S
Sbjct: 1625 KVDVEASRLSLSMKPS 1640



 Score =  324 bits (831), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 162/327 (49%), Positives = 221/327 (67%), Gaps = 30/327 (9%)

Query: 1627 EKNNRHAKKKEKEEREQEIRAAE-ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM 1685
            +K ++  KK+ KE+RE EIRAAE  RL    A   P +FERLV SSPNSSFVWIKYMA  
Sbjct: 1864 KKLSKGQKKRLKEQRELEIRAAELARLSGSAAATGPADFERLVLSSPNSSFVWIKYMALH 1923

Query: 1686 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN--PPEEAVVKVFQRAL 1743
            L   DV+ AR +A+RAL TIN REE EK N+WVA+ NLEN YG+   PEEAV+++ +RAL
Sbjct: 1924 LGKGDVDAARKVAQRALDTINYREEGEKFNVWVAWLNLENAYGSSPSPEEAVMELLKRAL 1983

Query: 1744 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ----- 1798
            QY D KK++LA LG++ER+ ++ LA++++  + KKF  S KVW R ++R L++       
Sbjct: 1984 QYTDQKKMYLAALGIFERSGRDDLAEQVVRTLTKKFGGSAKVWARALERSLQKGDGETPI 2043

Query: 1799 ----------------------EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
                                  +  + +++RAL SLP  KHIK + + A+ EF+ G A+R
Sbjct: 2044 FISYVPPSPVPYANFLRALRVAQSARQLLERALQSLPPRKHIKALVRAALAEFRLGSAER 2103

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
            GR + EG+L  YPKR DLW++Y+DQE++ G+   IR LFERA  L LPPKKMKFLF++YL
Sbjct: 2104 GRGILEGVLRNYPKRLDLWNVYIDQELKTGEQQRIRALFERATHLPLPPKKMKFLFRRYL 2163

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVESTL 1923
            EYEK  G+   +E+VK++AME+VES+L
Sbjct: 2164 EYEKEEGDTAAVEHVKRRAMEFVESSL 2190



 Score = 42.0 bits (97), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 10/182 (5%)

Query: 658  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 717
            P  +S D L K+G+ V+G V     +A  +++    +  G I   +L+D         + 
Sbjct: 1465 PELISADSL-KVGATVTGYVKRC--DAKGLFLALDRFRDGHIKLVNLSDGFIEDPA--AA 1519

Query: 718  IKPGYEFDQLLVLDNESSNL---LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
               G + +  ++   E   +   L SA      SA       S + P  +V G V  +  
Sbjct: 1520 FPAGMQLEARVLRVGEGGRIELTLRSATRQTSGSAAPAVQSLSELRPGQLVSGRVRRVER 1579

Query: 775  TGCFVRFLGR--LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
             G FV   G   L G A  S+  DG   D++  +   Q VR+ +  V+ E  R++LS+K 
Sbjct: 1580 FGVFVEVGGNPGLVGLAHISELADGPVKDINSVFKSKQLVRAVVTKVDVEASRLSLSMKP 1639

Query: 833  SC 834
            S 
Sbjct: 1640 ST 1641


>gi|326527133|dbj|BAK04508.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 450

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/471 (59%), Positives = 355/471 (75%), Gaps = 31/471 (6%)

Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            GQ+KRVESYGLF+TI+++ LVGLCH+SELS++ V +I   YRAG+ VK KILK+D+++ R
Sbjct: 2    GQVKRVESYGLFVTIKSSELVGLCHISELSDEPVLDINACYRAGDMVKAKILKIDQDRHR 61

Query: 1523 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEV-------GSYNRSSLLENSSVAVQDMDM 1575
            +SLG+K SYF +D  + +  +E + +    ++       G +N +S L            
Sbjct: 62   VSLGLKESYFDSDMTDDENDNENDGERVPMDISRAPQISGGFNSTSFLPGP--------- 112

Query: 1576 ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKK 1635
                         E RAS+P L+V LD+ +     G  +     + +++  +K++R  K+
Sbjct: 113  -------------EPRASIPALQVTLDEYEGSDQEGDQKGHEIANGSESNVKKSDRRLKE 159

Query: 1636 KEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1695
            K +++RE EI A EER L+KD P+TPDEFE+LVRSSPNSSFVWIKYMAF+L +ADVEKAR
Sbjct: 160  KARKQREIEISALEERALQKDTPQTPDEFEKLVRSSPNSSFVWIKYMAFLLDLADVEKAR 219

Query: 1696 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1755
            S+AERAL+TINIREE EKLN+WVAYFNLENEYG+P E+AV K+FQRALQYCDPKKVHLAL
Sbjct: 220  SVAERALRTINIREEEEKLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLAL 279

Query: 1756 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLP 1813
            LG+YERT+QN+LADEL  +M K+FK SCKVWLRR+Q  L Q +  E +++VV RALLSLP
Sbjct: 280  LGMYERTKQNELADELFDRMTKRFKTSCKVWLRRIQFSLTQGKDVEYIKSVVNRALLSLP 339

Query: 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1873
            + K IKF++QTAILEFK GVA+ GRS FE IL EYPKRTD+WS+YLDQEIRLGD ++IR 
Sbjct: 340  QSKRIKFLTQTAILEFKCGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRA 399

Query: 1874 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            LF+R   LSLPPKKMKFLFKKYL YEK+ G+EERIE+VKQKAMEYVE + A
Sbjct: 400  LFDRVTCLSLPPKKMKFLFKKYLRYEKAQGDEERIEHVKQKAMEYVEISRA 450


>gi|397510731|ref|XP_003825744.1| PREDICTED: protein RRP5 homolog [Pan paniscus]
          Length = 1803

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 443/1543 (28%), Positives = 751/1543 (48%), Gaps = 166/1543 (10%)

Query: 457  YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
            +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G +V
Sbjct: 342  FKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLV 401

Query: 517  QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKL 574
            +    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++SKL
Sbjct: 402  KVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKL 461

Query: 575  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
             +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQ
Sbjct: 462  PVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQ 521

Query: 635  VVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVTPNA 684
            VVK  +++  P+  R+ LSF +        +P   S+     +  G LV   V   T + 
Sbjct: 522  VVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINTGQLVDVKVLEKTKDG 581

Query: 685  VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 744
            + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  K +
Sbjct: 582  LEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPA 640

Query: 745  LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
            L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D      
Sbjct: 641  LVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTST 700

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS---- 858
            S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ     
Sbjct: 701  SDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGVRSL 759

Query: 859  -SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
             S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  VES
Sbjct: 760  MSNRDSVLIQTLAEMTPGMFLDLVVREVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVES 819

Query: 917  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            G   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ   A
Sbjct: 820  GQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ---A 861

Query: 977  IVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAG 1035
            +V+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T  
Sbjct: 862  VVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG- 920

Query: 1036 RLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEIKP 1076
             LLL ++  +   T    R                     KK +  +G +V   +  IKP
Sbjct: 921  -LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKP 979

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1136
              + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F +
Sbjct: 980  THVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKY 1034

Query: 1137 -------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDN 1176
                         ELS++PS L    T     S    E+      GQ VT ++  Y V  
Sbjct: 1035 LPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVK 1094

Query: 1177 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
            +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L  
Sbjct: 1095 KWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLTG 1154

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
                                + EG++  GR+ K+     GL V       G V    + +
Sbjct: 1155 THK-----------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHMSD 1196

Query: 1297 ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1356
                 PL  +   + V+C +L  +  V     + LSLR      SS  + +  + V+ P 
Sbjct: 1197 SYSETPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVEDP- 1244

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE----- 1411
              +  I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+     
Sbjct: 1245 -EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKTLYNK 1300

Query: 1412 -FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1470
              P GKL+  RVL +      VE++    D+      + + LS    G +   + ++ E+
Sbjct: 1301 HLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKTEA 1355

Query: 1471 YGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDKEK 1520
                   E  N       ++  ++ V+            +   R G++ +    +   E+
Sbjct: 1356 EERDQKGEKKNQKRNEKKNQKGQEEVEMPSKEEQQPQKPQAQKRGGQECR----ESGSEQ 1411

Query: 1521 RRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDG 1580
             R+S   K +    + D+L      E  E  EE     +    E  +   +   ++   G
Sbjct: 1412 ERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLSSG 1467

Query: 1581 GSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEE 1640
             +  +       ++PPL  + D E+ +  +  +Q             K ++  ++ EK++
Sbjct: 1468 FAWNVGLDSLTPALPPLAESSDSEEDEKPHQATQI------------KKSKKERELEKQK 1515

Query: 1641 REQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1699
             E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AE
Sbjct: 1516 AEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAE 1575

Query: 1700 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1759
            RAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y
Sbjct: 1576 RALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIY 1633

Query: 1760 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHI 1818
             ++E+ + A EL  +M+K+F+    VW++    LL++ Q      V+QRAL  LP  +H+
Sbjct: 1634 AKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHV 1693

Query: 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1878
              I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER 
Sbjct: 1694 DVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERV 1753

Query: 1879 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1754 IHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1796



 Score =  158 bits (399), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 153/538 (28%), Positives = 236/538 (43%), Gaps = 70/538 (13%)

Query: 54  FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
           FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8   FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110 LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                 S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64  ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169 PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                 NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
            + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176 NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
           G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236 GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY-------------------NQHKKVNARI 377
           + L+FLT+FTG VD  HL      T + N                     N HK    RI
Sbjct: 296 LTLNFLTFFTGVVDFMHLDPKKAGTYFSNQALSHLSDSKNVFNPEAFKPGNTHK---CRI 352

Query: 378 LFVDPTSRAVGLTLNP------YLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPS 431
           +          L+L        YL ++   P  V  G        V   +  G+L+ +  
Sbjct: 353 IDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKG-------TVLTIKSYGMLVKVGE 405

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG--- 488
                   + ++D+    ++  EKKY  G  V+ R+L            LK +  E    
Sbjct: 406 QMRGLVPPMHLADIL---MKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLP 462

Query: 489 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
           ++  ++D KPG+   G +I V  +G IV+F   V+ L P   +S   I  P + F  G
Sbjct: 463 VITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTG 520



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 31/244 (12%)

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
            H ++ KN  V +P   +  G   KC++++ S+         LSLR+S+            
Sbjct: 329  HLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL---LSLRTSI------------ 370

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
                   ++L +  D+ P  +V+G V  + S G  + +  ++   V   +L+D  +++PE
Sbjct: 371  ----IEAQYL-RYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPE 425

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIK 1466
            K++ IG  V  RVL  +P +K++ +TLK    +T  +S+   I   ++   G    G I 
Sbjct: 426  KKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLIESKLPVITCYADAKPGLQTHGFII 481

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
            RV+ YG  +   N N+ GL    ELS +++ + E ++  G+ VKV +L  +  K R+ L 
Sbjct: 482  RVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLS 540

Query: 1527 MKSS 1530
             K S
Sbjct: 541  FKLS 544



 Score = 68.2 bits (165), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 144/640 (22%), Positives = 249/640 (38%), Gaps = 105/640 (16%)

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 1028
             V Q +N IVE VK N  V+SL     S+G++ VS                       A+
Sbjct: 234  KVGQYLNCIVEKVKGNGGVVSL-----SVGHSEVS----------------------TAI 266

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 1088
             +   +  L  LL                      G +V+A++ ++ P  L L F   F 
Sbjct: 267  ATEQQSWNLNNLLP---------------------GLVVKAQVQKVTPFGLTLNFLTFFT 305

Query: 1089 GRIHITEVNDDKSNVV------------ENLFS--NFKIGQTVTARIIAKSNKPDMKKSF 1134
            G +    ++  K+               +N+F+   FK G T   RII  S   +     
Sbjct: 306  GVVDFMHLDPKKAGTYFSNQALSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDE----- 360

Query: 1135 LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194
            L  LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +
Sbjct: 361  LALLSLRTSIIEAQ------YLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPM 414

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
              A     ++  ++++HIG  V   VL  + E K L + L+          +    D   
Sbjct: 415  HLA--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKP 472

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                 G I+  R+        G +V+   ++ G V   EL    + DP   +  GQ VK 
Sbjct: 473  GLQTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKV 525

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
             VL          + E S    L  +S   SSD     +  G   +K + ++   +V   
Sbjct: 526  VVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINTGQLVDVK 573

Query: 1375 VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKR 1431
            V   T  G  + +L   + A +  S+LSD     P        G ++  RVL +     R
Sbjct: 574  VLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGR 632

Query: 1432 VEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V +  K +   T    +   N S +H G ++IG +K ++ YG+FI    + L GL   + 
Sbjct: 633  VLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAI 691

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 692  MSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 731



 Score = 45.1 bits (105), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 125/309 (40%), Gaps = 47/309 (15%)

Query: 379 FVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 438
             D   ++V L+LNP  ++       +K G +   +     D G   L+DI      T A
Sbjct: 158 ITDRGKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHGY--LVDIGVD--GTRA 213

Query: 439 YVTISDVAEEEVRKLEK--KYKEG---SCVRVRILGFRHLEGLATG---ILKASAFEGLV 490
           ++ +   A+E +R+  K  K K G   +C+  ++ G   +  L+ G   +  A A E   
Sbjct: 214 FLPLLK-AQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQS 272

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQF-----------------PGGVKALCPLPHMSE 533
           +  +++ PG+VVK +V  V  FG  + F                  G   +   L H+S+
Sbjct: 273 WNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTYFSNQALSHLSD 332

Query: 534 FEIVKPGKKFKVGAELVFRV--------LGVKSKRITVTHKKTLVKSKLAILSSYAEATD 585
            + V   + FK G     R+        L + S R ++   + L          Y +   
Sbjct: 333 SKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYL---------RYHDIEP 383

Query: 586 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G +  I+ +G  V+    ++G  P   L       P   YH+G  VKCR++   P
Sbjct: 384 GAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDP 443

Query: 646 ASRRINLSF 654
            ++++ ++ 
Sbjct: 444 EAKKLMMTL 452


>gi|428178388|gb|EKX47263.1| hypothetical protein GUITHDRAFT_137461 [Guillardia theta CCMP2712]
          Length = 1592

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 430/1473 (29%), Positives = 733/1473 (49%), Gaps = 105/1473 (7%)

Query: 116  SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILD 172
            S K+P++   +  K ++ GM L G V EV + D  I LP  L G   +   +D L  +L+
Sbjct: 116  SMKMPKFIEPLRFKKLNTGMLLCGFVKEVRQADATISLPNNLTGWVEIDEISDELSAVLE 175

Query: 173  NEIEANEDNLLPT--IFHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSL 227
              +E  E +  P      +G  V C++L    L    K+  K  I +SL+ S +   L+L
Sbjct: 176  QVLEDEEADAPPLEDYIWIGMPVRCVILSTAVLSTAGKQQHK-NISVSLKPSRVNSALAL 234

Query: 228  ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSI 287
            +T+ +G+ L   V S ++ GY +  G    T FLP     E S  ++K G LL+  V+ +
Sbjct: 235  DTLHKGLSLYGAVSSKQEKGYTISLGTSEATAFLP---FQEVSRGELKVGQLLETYVKKV 291

Query: 288  DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
             +  K+  +S+  +++   +TK+++ +++D L+PGM+   +V  + E+G+++ FL +F G
Sbjct: 292  KKEHKLAIVSTQRESLEDSLTKEIESLTLDNLLPGMIFKCKVAKVHESGLVVRFLNFFFG 351

Query: 348  TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---SH 404
            T+D+FHL     +      +++ + V ARI+ +D  +  +GL+L  ++L +  PP   + 
Sbjct: 352  TIDLFHLP-LVGSGKGVEQFSEKQVVTARIISLDVGANRIGLSLRRHVLDSLPPPYVQAD 410

Query: 405  VKVGDIYDQSKVVRVDRGLGLLLDIP---STPVSTPAYVTISDVAEEEVRKLEKKYKEGS 461
            VK+G  +D + V RVD  +G+LL++        S   YV IS+V++E V K+EK+   G 
Sbjct: 411  VKMGQRFDGAIVRRVDPEVGVLLEVQLGGEGSESLEGYVHISNVSDERVEKVEKEVAVGK 470

Query: 462  CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 521
             V  R++GF   +GL    +K S     V  + D+ PG +VK KV  +   G +V     
Sbjct: 471  EVSCRVIGFSWADGLINMSMKPSVLAAEVLLYDDLTPGDLVKVKVERLSEEGCLVSISDN 530

Query: 522  VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSS 579
            V+   P  H ++  +V P ++   G  +  RVL V  +++++ +T KKTLV S L +++ 
Sbjct: 531  VRGYIPSSHFADVALVNPERRLLPGKMIKARVLRVNPQTRQLLLTLKKTLVSSSLPLIAR 590

Query: 580  YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQVVKC 638
              +A   +++HG + K+++ G  V F+   +GF PRSELG++   E     +   QV+K 
Sbjct: 591  VEDAKVGMLSHGVVYKVQESGVLVSFFGTAKGFLPRSELGIEQEAERVEDCFKPDQVLKV 650

Query: 639  RIMSSIPASRRINLSFMMKPTR---VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 695
            R++S     +RI LS          ++    + +G LV   ++VV      + V A   +
Sbjct: 651  RVLSVEVDRKRIVLSLKAAKENSQIIATSARLTVGELVE--MEVVEKQEEALLVRAANGA 708

Query: 696  KGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQQ-- 751
             G +P  HLADH   A +    ++P       LVLD     S  L++ K SL+++ ++  
Sbjct: 709  VGFLPRPHLADHSNLAALAFQQLQPEARLT-CLVLDLLANKSRYLVTVKPSLLSAVREEN 767

Query: 752  LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 811
             PS  + +HP   + GYV ++   G FVRFLGRLT  AP S    G   D    +  GQS
Sbjct: 768  FPSSLAQLHPQQFLQGYVFSVKSCGVFVRFLGRLTALAPSSSLAAGHVDDPQSLFEEGQS 827

Query: 812  VRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 871
            VR  ++           +LK S C STD+SF++    +E    ++  ++  G E K    
Sbjct: 828  VRCCVV-----------TLKPSICLSTDSSFLKS---MEATEQLVLEAQMKGGESKRA-- 871

Query: 872  FIIGSVIEGKVHESNDFGVV---VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 928
               G V+E +V E+   GV    + FE    + G    H    A V +G   +  +L   
Sbjct: 872  ---GQVVEEQVVEALCVGVKGKELHFELPGSLVGVCPPHLHGRAKVTTGKRYKVCVL--- 925

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 988
                L+D   + V++    E  ++ QA KK + +E  ++L    +V  IV++V E  +VL
Sbjct: 926  ----LIDKLRERVYVGMEDELVASLQASKKGKGKEKEQELMPADSVRGIVQLVGEERVVL 981

Query: 989  SLPEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET 1047
            SLP+ +  +  AS+ D+N + +  +KQF+ GQS+   V+        G  +L+++A S +
Sbjct: 982  SLPQ-SRKLAVASIEDFNVRGERARKQFVPGQSMDVLVL-----EATGAPVLVMRADSGS 1035

Query: 1048 ETSSSKRAKKKSSYDV--------------------GSLVQAEITEIKPLELRLKFGIGF 1087
              +  +  +K    ++                    G LV+  +  +K     ++ G G 
Sbjct: 1036 GKTQRREGQKVDDEELMRNGENCKGARLTSMEEAERGKLVKGIVHSVKATHANVRLGGGL 1095

Query: 1088 HGRIHITEVND--DKSNVVENLFSNFKIGQTVTARIIAK-SNKPDMKKSFLWELSIKPSM 1144
             G I + +  D  +     EN  S  + GQ + AR++   S     + + L  LSI+PS 
Sbjct: 1096 RGVIDLLDAMDPEEMREGKENRLSMLQQGQAIDARVLGVFSPARAGRDTRLVALSIRPSE 1155

Query: 1145 LTVSE---IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201
            L   E   +  +   +E              + D  W  L  S  LK ++  LD++ E +
Sbjct: 1156 LAQPEETPLTKRPSLDELKEGEEVEGMVEKVEGDCLWVHLGSS--LKGRVEQLDASRELT 1213

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1261
             L+  ++ F +G+ V   V++++  K  + L L    +   +K         +  I  G+
Sbjct: 1214 VLENLKKNFKVGQGVRASVIAVDVGKSRVDLRLLEEGEKGKEKGSGRKRKKGEEAIQVGE 1273

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISR 1321
            +V  +I K   G G  V+++G H +GRVH  ++ +  V  PLS +  GQ V+C VLE   
Sbjct: 1274 VVPAKIVKARPGFG-FVLKLGLHSFGRVHICDIADAAVDAPLSLFKVGQLVRCCVLEAEE 1332

Query: 1322 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1381
                     LSLR S          + +         +  +++L+   ++ GYVK+ +S 
Sbjct: 1333 D-----GFALSLRPSRVSGKRRGEEEEAVREHGAFPEVSSVKELAVGQLLSGYVKSASSA 1387

Query: 1382 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            G F+ L R++ A+V +S LSDGYV+  +  FP G+ V+GRV+SVE   ++V+++LK S  
Sbjct: 1388 GVFVQLGRQVTARVKISELSDGYVKDVKANFPPGRRVSGRVISVEVKKEQVDLSLKRS-- 1445

Query: 1442 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1501
                       S+L VG +V G +K V+S+G+F+ I  + L GLCH+SE+ E+ V ++  
Sbjct: 1446 -VVLGKRRVGWSDLQVGQVVAGAVKSVQSFGVFVRIRGSELDGLCHISEVGEEFVRDLSK 1504

Query: 1502 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
             ++ G+KVK KIL++D +++ ISLGMK  Y ++
Sbjct: 1505 QFKQGDKVKAKILRMDPQRKTISLGMKPEYLQD 1537


>gi|224138158|ref|XP_002322744.1| predicted protein [Populus trichocarpa]
 gi|222867374|gb|EEF04505.1| predicted protein [Populus trichocarpa]
          Length = 280

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/279 (82%), Positives = 256/279 (91%)

Query: 1642 EQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1701
            EQEI AAEER LE+D PRT DEFE ++RSSPN+SF+WI YM FMLS+AD+EKARSIAERA
Sbjct: 2    EQEISAAEERRLEEDEPRTADEFEMVIRSSPNNSFLWIAYMRFMLSLADIEKARSIAERA 61

Query: 1702 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1761
            L TINIREE+EKLNIWVAYFNLENEYGNPPE+AV KVFQRALQYCDPKKVHLALL +Y++
Sbjct: 62   LNTINIREEDEKLNIWVAYFNLENEYGNPPEDAVKKVFQRALQYCDPKKVHLALLKMYKK 121

Query: 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFI 1821
            T QNKLA+ELL KMIKKFKHSCK WL+RV+ LLKQ+Q+GVQ+VVQRALL LPRHKHIKFI
Sbjct: 122  TNQNKLAEELLDKMIKKFKHSCKFWLKRVKWLLKQKQDGVQSVVQRALLCLPRHKHIKFI 181

Query: 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881
            SQTAI EFK GVADRGR++FE IL EYPKRTDLWS+YLDQEI+LGD D+IR LFERAISL
Sbjct: 182  SQTAIREFKCGVADRGRTLFEEILREYPKRTDLWSVYLDQEIKLGDADVIRSLFERAISL 241

Query: 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            SLPPKKMKFLFKKYLEYEKS G+E++IE VKQKAMEYV+
Sbjct: 242  SLPPKKMKFLFKKYLEYEKSYGDEKQIESVKQKAMEYVQ 280


>gi|326433657|gb|EGD79227.1| hypothetical protein PTSG_12966 [Salpingoeca sp. ATCC 50818]
          Length = 2005

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 400/1441 (27%), Positives = 692/1441 (48%), Gaps = 138/1441 (9%)

Query: 186  IFHVGQLVSCIV--LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 243
            +F VGQ + C V   +L +++  I      L++  + + KGL    + +G V+ A VKSI
Sbjct: 182  LFSVGQQIVCRVKSTELKNNRPIIN-----LTVNPTAINKGLETAALVKGRVVAACVKSI 236

Query: 244  EDHGYILHFGLPSFTGFLPRNN---LAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSD 299
            E+HGY+L  G+   TGFL  NN   L E  G   + PG  L   + +  +  +   + + 
Sbjct: 237  EEHGYVLDLGVGHATGFLSTNNAKPLCEKLGTKSLVPGHPLLVALTTTVKGGRAAKVIAA 296

Query: 300  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
            P  V+     D + +++  L  G++V  +V++   +G++ S L  F   V  +HL +   
Sbjct: 297  PSEVAATKLTD-EEVTLKQLRAGLLVDAKVKAHTRSGLIASALG-FDANVHYYHLPHVSG 354

Query: 360  ---TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR--APPSHVKVGDIYDQS 414
                   K  Y +   V ARI+F +P + ++ L+L P  +  R  A  +   +G I + +
Sbjct: 355  GDVQKRLKTAYPEGSVVPARIIFSNPAASSLNLSLLPAHISMRGSAAGTGATLGAIVETA 414

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
             V+R D   G +LD+ +   +   +V  S V++++     KK K GS  R RI+    ++
Sbjct: 415  TVLRTDGRGGAVLDLGA---AGQGFVAPSRVSDKKSDASLKKLKPGSVHRARIISVHPMD 471

Query: 475  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
             +    L+ S  +   + + D+  G VV+  V +++ +GA+V+    ++ L P  H ++ 
Sbjct: 472  NIVAVSLQKSVLDLPYYRYEDIPAGAVVEATVESLEEYGALVRLSDTIRGLVPALHFADV 531

Query: 535  EIVKPGKKFKVGAELVFRVLG--VKSK---RITVTHKKTLVKSKLAILSSYAEATDRLIT 589
             + KP  KF  GA++  RVL   V SK   R+  T KKTLV+S L +++S A A   ++ 
Sbjct: 532  TLRKPAVKFHPGAKVKCRVLSNIVTSKGKRRLAFTCKKTLVESDLPVIASAASARRGMLA 591

Query: 590  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV-GQVVKCRIMSSIPASR 648
            HG+I  I   GC VRFYN V+G  P  EL      + +S Y   GQVVKCR++ +  A R
Sbjct: 592  HGFIDSIRPFGCIVRFYNNVKGLVPLKELSATEKIKDASAYFKEGQVVKCRVVQTDQAKR 651

Query: 649  RINLSFMMKPTRVSEDDLVKL---------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 699
            RI LSF+   T +SEDD+ K          GS+V+ V+D V  + + V++      + TI
Sbjct: 652  RIGLSFIH--TALSEDDINKQRDTVTALSPGSIVTAVIDSVQTSGLNVHLKENPLVRVTI 709

Query: 700  PTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESS-------NLLLSAKYSLINSAQQL 752
             + HL DH   A  M S    G +   +++     +       +L++ AK +++ S  +L
Sbjct: 710  DSMHLTDHPSLAPQMASCFTEGQKITAVVIWKRNRNVSLSLKPSLMVQAKEAVVASKDEL 769

Query: 753  PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
                 H        GY+ +   T  FV  +G ++G  P  +A  G    +   +   Q+V
Sbjct: 770  KEGEQHF-------GYISSSTRTMSFVNLIGSVSGMCPIREASSGYVRSMESYFSPNQTV 822

Query: 813  RSNILDVNSETGRITLSLKQSCCS-STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 871
             + +  +  + G++  S K +  S   +ASF+Q +F   E+IA+   S      LK+  G
Sbjct: 823  CARVHAI--KDGKVDFSFKSAQLSPQQEASFIQSYFADLERIAVSSRS----DVLKYKAG 876

Query: 872  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
             ++ +V++    +  D+G+ V  ++     GFI+  Q  G  +E+   ++A +LDV  A+
Sbjct: 877  DVVSAVVK----DIKDYGITVVTDD--GCTGFISSAQAKGVPLETDGKVEAVVLDVDTAK 930

Query: 932  RLVDLSLKTVFIDRFREA------------------NSNRQAQKKKRKREASKDLGVHQT 973
             ++DL ++   +   ++                      +Q   +  + +  + L   Q 
Sbjct: 931  SVLDLGVRPSLVAGAKKVLGGAGEKKKSKKKGKKGKKGKQQQDDEDDEDKPVEKLSQEQE 990

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
             +A +E+VKE+Y+VLS+ +    +  A+   YN ++ P ++   G      V+AL    T
Sbjct: 991  ADATIELVKEDYMVLSVGDGRLVV--AACKSYNDRESPFRKHFPGNGARVKVLALDEKHT 1048

Query: 1034 -----------AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLK 1082
                        G+        ++ +          S   +G++++A+I+ I   +L LK
Sbjct: 1049 FVQVLAEDNKGKGKDAKKQAKKADADKKQVAALSPASDATMGAIIKAKISAIHKAQLNLK 1108

Query: 1083 FGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII----AKSNK--PDMKKSF-- 1134
               G  GR+HITEV   + +  ++ F  F   Q V  R+I    AK++   P    +F  
Sbjct: 1109 LAGGGRGRVHITEVEQPQEDGAKS-FDPFTKNQVVECRVIGYRDAKNHNFLPITHTNFTS 1167

Query: 1135 -LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
             + E S++   L+ S+           V +GQ++ G V  V+     + IS HL  ++ +
Sbjct: 1168 TIVEASMRAQDLSKSKKKVVPRLTADQVQVGQKLLGVVGAVEPNRMWIDISIHLSGRVSL 1227

Query: 1194 LDS-AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             ++       L+  Q  +  G  +T  V+++   K  L              T+D +   
Sbjct: 1228 QNAQPLNGDMLKSLQDMYEPGSPITTWVVAVKNGKVEL-------------STIDPATQE 1274

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
             Q      +I  GR+     G   L+V++G    GRVH  ++ +   +DP   +   + V
Sbjct: 1275 EQ---ENKEITTGRVH--TKGSIHLIVRLGRGKKGRVHICDVDDKFHADPFQRFALHELV 1329

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH-LEKIEDLSPNMIV 1371
            K K +E  +            +   D   S   S++ T    P    +    D+  + IV
Sbjct: 1330 KVKKVEAPKHSHRN-----EQQHKADCQLSMRPSEIDTSTAAPRDPIIASAADVKQDQIV 1384

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +GYV NVT  G F+ LSR + A+V ++NLSD +++   K F  G+LV G+VL V    K 
Sbjct: 1385 RGYVCNVTDNGVFVALSRHVSARVKIANLSDLFIKDFTKVFKPGQLVKGKVLFVTDDGK- 1443

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
            +E+TLK S +    +S+    ++L +G IV G IKRVES+G+F+TI+N+ L GL H+SE 
Sbjct: 1444 IELTLKRS-AVNPRESKPVRYNDLKIGQIVAGVIKRVESFGVFVTIDNSKLSGLAHISEC 1502

Query: 1492 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAI 1551
            ++  +DN++ +Y  G+ VK KIL+++KEK+RISL +K S  +      + S+ E+ +E+ 
Sbjct: 1503 ADAKIDNLDAVYNVGDAVKAKILRLNKEKKRISLTLKPSAVEG-----KQSTGEDDEESG 1557

Query: 1552 E 1552
            E
Sbjct: 1558 E 1558



 Score =  292 bits (748), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 141/298 (47%), Positives = 202/298 (67%), Gaps = 5/298 (1%)

Query: 1628 KNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1687
            K  +HA KK++E   +  R  EE++  K  P+TP +F+RLV  +PNSS+ WI+YMA+ L 
Sbjct: 1712 KRAKHAAKKQREAETR--RKEEEKVAGKKEPQTPMDFDRLVLQAPNSSYAWIRYMAYYLK 1769

Query: 1688 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1747
            + +++KAR++ +RAL TIN REE E++N+WVA  NLEN YG P    +  VF  A +  D
Sbjct: 1770 LTELDKARAVGKRALSTINFREEKERMNVWVALLNLENAYGTP--ATLNNVFTEACRQMD 1827

Query: 1748 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQ 1806
            P++++  L+ +YER+ + + ADEL   M KKF    +VWLR  +   K+ + +  + V++
Sbjct: 1828 PQRMYFHLVSIYERSHKFREADELFQVMCKKFNKVQRVWLRFAEFKFKRGRSKEARQVLE 1887

Query: 1807 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866
            R+L SLPR  H+  I +  ILEFK G  +R R++FE +LS YPKR DLWSIYLDQE R+G
Sbjct: 1888 RSLKSLPRPDHVDTIVKFGILEFKQGDVERARTIFENVLSNYPKRVDLWSIYLDQEQRVG 1947

Query: 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            D  +IR LFER I+L+L  KKM+F FK+YL++EK  G+   +E+VK+KA EYV S  A
Sbjct: 1948 DKGVIRALFERVITLNLSSKKMRFFFKRYLDFEKEHGDAGHVEHVKEKAREYVASKSA 2005


>gi|320036441|gb|EFW18380.1| rRNA biogenesis protein RRP5 [Coccidioides posadasii str. Silveira]
          Length = 1830

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 378/1325 (28%), Positives = 662/1325 (49%), Gaps = 134/1325 (10%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
            V +G++V G ++  ++ P+ +  ++  +A G S G +P  H+AD  L+H    +   + G
Sbjct: 565  VTVGAVVKGKIEKLLMGPDGINGLLVSLADGIS-GLVPGVHMADTKLQHP---EKKFREG 620

Query: 722  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             +   ++L ++ E   L L+ K SL++S   +  D   I P +   G   +I E G  ++
Sbjct: 621  LQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQ 680

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F G + GF P S+  +    D S+ + +GQ V  N L V++E GR+ +S K       D 
Sbjct: 681  FYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK-------DP 733

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            S + + +    K A               E    G ++ G V E +   +++  E    +
Sbjct: 734  SIVTDAY----KSAF--------------ENVHPGLLVSGTVFEKSSDDLLLKLEAGG-L 774

Query: 901  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL-KTVFIDRFREANSNRQAQKKK 959
               ++  QL+ A     +   A +    K   L+ LS+ KT  + +     S + A +K 
Sbjct: 775  IARLSAEQLSDAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKTALEKG 834

Query: 960  RKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNG 1018
                  +DL ++ +V  +V  I  +   V  L      +    V D +  K     F+  
Sbjct: 835  TLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTK-ADFGFMRT 893

Query: 1019 QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV--------------- 1063
            QS+  +V ++     A R +L +K + + E    +R K K++ ++               
Sbjct: 894  QSISCSVSSI--DQDAQRFILTMKPVEKEEEKHERRYKTKNTNELSVSNPVDQDIKSLDD 951

Query: 1064 ---GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVT 1118
               G + +A IT +K  +L +       GRI ++EV D+  ++ +       +K  Q V 
Sbjct: 952  FITGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRLYKPKQVVP 1011

Query: 1119 ARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1169
             +I+   +    K         K  ++ELS KPS L   ++    L +   V +G    G
Sbjct: 1012 VKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLDPISLEK---VKVGSSFLG 1068

Query: 1170 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1229
            +V  + ++   L IS  ++ +L I+D + + +   + +R F IG A+   V +++ +K  
Sbjct: 1069 FVNNIGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVAAVDVDKNR 1128

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
            L L  +    G S K + IS+      + +G I+ G+++K+      ++VQ+   L G +
Sbjct: 1129 LDLTAK---HGASSKKLTISD------LSKGMILLGKVTKVTER--QVLVQLNESLVGAI 1177

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
               ++     +D  S  +   F K  VL +         V++ + +    +S   S  LS
Sbjct: 1178 GLLDM-----ADDYSKINPANFHKNAVLRVCV-------VDVDVPNKRVALSVRPSKVLS 1225

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
            T +      +  I+ L  N IV+G+V+ +   G F+ L   + A V +S+LSD Y++  +
Sbjct: 1226 TSLPVEDPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNVTAYVRVSDLSDSYLKEWQ 1285

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1469
             EF I ++V GR+  V+P +K+V++TLK S      +  +  L +L  G IV G++++VE
Sbjct: 1286 DEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLK-LKDLKPGQIVTGKVRKVE 1344

Query: 1470 SYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             +G F++I+ T NL GLCH SE++E  V +   +Y  G+ VK KILK+D +K +ISLG+K
Sbjct: 1345 EFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQISLGLK 1404

Query: 1529 SSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESED---GGSLVL 1585
            +SYF ND+D       E + E  EE G      +   + +  +D+  E ED   GG  + 
Sbjct: 1405 ASYFNNDSDEADSDMSEGASE--EESGDDELGGVALKAGIDDEDLSDEGEDIIMGGVDLS 1462

Query: 1586 AQIESRASVPPLEVNLDDEQPDMDNG-ISQNQGHTDEAKTIDEKNNRHA-------KKKE 1637
              +   A    ++V + D   D +   ++     T ++  I +  N  A         K+
Sbjct: 1463 NSLVQSADSDNVDVLMADADGDQEGALVTSGFDWTGDSYEIQKGLNGAAFDSDDENMSKK 1522

Query: 1638 KEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            K+ R+ EI+      L+ + P+T D++ERL+   PNSS +W+KYMAF L + +V+KAR I
Sbjct: 1523 KKRRKAEIQVDRTGDLDANGPQTVDDYERLLLGEPNSSLLWLKYMAFHLELGEVDKAREI 1582

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL++I++ ++ EK N+WVA  NLEN +G   ++++ +VF+RA QY D +++H  +  
Sbjct: 1583 AERALRSISLGQDTEKFNVWVAMLNLENTFGT--DDSLEEVFKRACQYNDAQEIHEKMAS 1640

Query: 1758 LYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPR 1814
            ++ ++++ + ADE+    + KKF  S  ++L     L       +  +A++ RA+ SLP 
Sbjct: 1641 IFIQSDKPEKADEIFQSALKKKFTQSPNLFLNYANFLFDTMAAPDRGRALLPRAMQSLPP 1700

Query: 1815 HKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872
            H H++  S+   LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI++GDVD +R
Sbjct: 1701 HTHVELTSKFGQLEFRSLHGDVERGRTVFEGLLSSFPKRVDLWNILLDLEIKVGDVDQVR 1760

Query: 1873 GLFERAISLS--------------LPPKKMKFLFKKYLEYEKSV--GEEERIEYVKQKAM 1916
             LFER + +               L  K+ KF FKK+L +E+ +  G+++ ++ VK +A 
Sbjct: 1761 RLFERVLGIGRGVGADGSKAGMKKLKDKQAKFFFKKWLTFEEKISNGDDKMVDEVKARAA 1820

Query: 1917 EYVES 1921
            EYV+S
Sbjct: 1821 EYVKS 1825



 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 316/1361 (23%), Positives = 563/1361 (41%), Gaps = 131/1361 (9%)

Query: 49   DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE--AVERGLHKKNKKKKKKTERKANETV 104
            D+ P FPRGG ++LT  ER +I   A  D  FE      G    +  + +K E  A E  
Sbjct: 73   DEAPAFPRGGNNALTPLERKQIQIQATRDVLFEQNGTPGGEILNDDSEIEKDEDTAREDA 132

Query: 105  DDLGSLFGDGISGKL----------PRYANKITLKNISAGMKLWGVVAEVNEKDLVICLP 154
                         K           P+  + ++ K I  G K+ G V+ +   ++ + LP
Sbjct: 133  TKASKKKQKAKKHKKSAEALAKPQGPKIES-LSFKRIVPGSKILGQVSSIGTHNISLALP 191

Query: 155  GGLRGLARAADALDPILDNEIEANEDNL---------------LPTIFHVGQLVSCIVLQ 199
              L G      A+  IL  +IE    N                L +   +GQ +   V  
Sbjct: 192  NNLTGYVPWT-AVSKILKGKIEKLLKNAEDDEIDEDTDEDDFNLKSYVRLGQYLRASVSS 250

Query: 200  LDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
              D+   +GK  ++I LS+       GLS   +     + A V S+ED+G I+  GL   
Sbjct: 251  TTDNGHGLGKGKKRIELSVDPQEANAGLSKSDMIVDSTVQASVLSVEDYGLIMDLGLEDV 310

Query: 258  T--GFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL- 311
               GF+    L    G+D   VK G +   VV   +    V+ LS++    +        
Sbjct: 311  NTRGFMSSKELP--PGVDLSQVKEGAVFLCVVTGHNAAGNVIKLSANLQKAASAKKSHYL 368

Query: 312  -KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 370
                +I+  +PG      +  +  NG+    +      VD  H  +T  T +    Y   
Sbjct: 369  SSAPTINTFLPGTAAEILLTEVTPNGMTGKIMGMLDVVVDAVHSGSTDETKDLTKKYRPA 428

Query: 371  KKVNARILFVDPTSR--AVGLTLNPYLLHNRAPPSHVK----------VGDIYDQSKVVR 418
             K   R++   P+     +G ++  ++L  +  P+ V           +  I  + KV++
Sbjct: 429  TKATGRLICTYPSDENPKLGFSILDHVL--KFSPTSVADPQDRDDKPAISAIIPEVKVIK 486

Query: 419  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEG 475
            VD  LGL + + +T      +V IS V + +V  L   E  +K GS    RI+GF  L+ 
Sbjct: 487  VDPTLGLYVQLGNT--KHYGFVHISRVKDGKVSSLSSAEGPFKVGSHHEGRIIGFNALDN 544

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPH 530
            L    L+    +       DV  G VVKGK+    +  D   G +V    G+  L P  H
Sbjct: 545  LFLLSLEKKVIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGINGLLVSLADGISGLVPGVH 604

Query: 531  MSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
            M++ ++  P KKF+ G ++  R+L V  + +++ +T KK+L+ S+ AI   Y +      
Sbjct: 605  MADTKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQ 664

Query: 589  THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            + G    I+++G  ++FY  V+GF P SE+      +PS  + +GQVV    +S      
Sbjct: 665  SPGTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQG 724

Query: 649  RINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            R+ +S    P+ V++      + V  G LVSG V   + + +++ + A G     +  E 
Sbjct: 725  RLVVS-CKDPSIVTDAYKSAFENVHPGLLVSGTVFEKSSDDLLLKLEAGGLI-ARLSAEQ 782

Query: 704  LADHL-EHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASH 758
            L+D     A    + ++ G +   LL+L    ++ L+  S K SL  + ++  LP+    
Sbjct: 783  LSDAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKTALEKGTLPAKFED 842

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
            +  NS V G V NI + G FV FLG LTGF P+    D         +   QS+  ++  
Sbjct: 843  LKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFGFMRTQSISCSVSS 902

Query: 819  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
            ++ +  R  L++K             +     E    L  S     ++K ++ FI G V 
Sbjct: 903  IDQDAQRFILTMKPVEKEEEKHERRYKTKNTNE----LSVSNPVDQDIKSLDDFITGKVT 958

Query: 879  EGKVHESNDFGVVV----------SFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV- 927
            + ++    D  + V             E  D +  I   +      +   V+   IL V 
Sbjct: 959  KARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRLYKPKQVVPVKILGVH 1018

Query: 928  -AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYL 986
             A+  + + +S +T  +  F  +      +       + + + V  +    V  + ++ L
Sbjct: 1019 DARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLDPISLEKVKVGSSFLGFVNNIGDDCL 1078

Query: 987  VLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAI 1044
             L++ P     +    +S D       ++ F  G ++  TV A+       RL L  K  
Sbjct: 1079 WLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVAAVDVDKN--RLDLTAK-- 1134

Query: 1045 SETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV 1104
                 +SSK+    S    G ++  ++T++   ++ ++      G I + ++ DD S + 
Sbjct: 1135 ---HGASSKKL-TISDLSKGMILLGKVTKVTERQVLVQLNESLVGAIGLLDMADDYSKIN 1190

Query: 1105 ENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
                +NF     V    +   + P+ + +    LS++PS +    + + L  E+ +++  
Sbjct: 1191 P---ANFH-KNAVLRVCVVDVDVPNKRVA----LSVRPSKV----LSTSLPVEDPEIASI 1238

Query: 1165 QR------VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
             R      V G+V ++ +    +T+  ++ A + + D     S L+E+Q  F I + V G
Sbjct: 1239 DRLKVNDIVRGFVRRIADIGLFVTLGHNVTAYVRVSD--LSDSYLKEWQDEFQIDQIVRG 1296

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
             +  ++ E K +++ L+      S    D         +  G IV G++ K+      + 
Sbjct: 1297 RITLVDPEAKKVQMTLKQ-----SALDPDYKPPLKLKDLKPGQIVTGKVRKVEEFGAFVS 1351

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            +    +L G  H +E+    V+D    Y++G  VK K+L+I
Sbjct: 1352 IDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKI 1392



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 278
            +SLE V+ G     +V +I D    L+   PS  G LP  +++++  +  D+K     G 
Sbjct: 1055 ISLEKVKVGSSFLGFVNNIGDDCLWLNIS-PSVRGKLPIMDISDDLALAGDIKRTFPIGS 1113

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             L+  V ++D  +  + L++     SK +T       I  L  GM++  +V  + E  V+
Sbjct: 1114 ALKVTVAAVDVDKNRLDLTAKHGASSKKLT-------ISDLSKGMILLGKVTKVTERQVL 1166

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD---PTSRAVGLTLNPY- 394
            +       G + +  + + +   N     N HK    R+  VD   P  R V L++ P  
Sbjct: 1167 VQLNESLVGAIGLLDMADDYSKIN---PANFHKNAVLRVCVVDVDVPNKR-VALSVRPSK 1222

Query: 395  LLHNRAPPSHVKVGDIYDQSKVVRVDRG-------LGLLLDIPSTPVSTPAYVTISDVAE 447
            +L    P    ++  I D+ KV  + RG       +GL + +     +  AYV +SD+++
Sbjct: 1223 VLSTSLPVEDPEIASI-DRLKVNDIVRGFVRRIADIGLFVTLGH---NVTAYVRVSDLSD 1278

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKG 504
              +++ + +++    VR RI             LK SA +          D+KPG +V G
Sbjct: 1279 SYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTG 1338

Query: 505  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 562
            KV  V+ FGA V   G   +  LC    M+E ++    K ++ G  +  ++L +  K+  
Sbjct: 1339 KVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQ 1398

Query: 563  VT 564
            ++
Sbjct: 1399 IS 1400



 Score = 62.0 bits (149), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 147/367 (40%), Gaps = 57/367 (15%)

Query: 1178 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL--- 1234
            +  + ISR    ++  L SA  P         F +G    G ++  N    L  L L   
Sbjct: 503  YGFVHISRVKDGKVSSLSSAEGP---------FKVGSHHEGRIIGFNALDNLFLLSLEKK 553

Query: 1235 ---RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL---SGVGGLVVQIGPHLYGR 1288
               +PF   + D TV             G +V G+I K+L    G+ GL+V +   + G 
Sbjct: 554  VIDQPFLR-LEDVTV-------------GAVVKGKIEKLLMGPDGINGLLVSLADGISGL 599

Query: 1289 VHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1348
            V    + +  +  P   + EG  V  ++L ++   R    + L+L+ SL    S    D 
Sbjct: 600  VPGVHMADTKLQHPEKKFREGLQVTARILSVNLEKR---QLRLTLKKSLLHSESAIWKDY 656

Query: 1349 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1408
                           D++P     G   ++   G  I     +   + +S +S+ Y++ P
Sbjct: 657  --------------RDIAPGNQSPGTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDP 702

Query: 1409 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1468
             + F IG++V    LSV+    R+ V+ K  D    + +  +   N+H G +V G +   
Sbjct: 703  SQHFSIGQVVNVNALSVDAEQGRLVVSCK--DPSIVTDAYKSAFENVHPGLLVSGTVFEK 760

Query: 1469 ESYGLFITIENTNLVGLCHVSELSE----DHVDNIETIYRAGEKV-KVKILKVDKEKRRI 1523
             S  L + +E   L+      +LS+        N+  + R G+K+  + IL + K  R I
Sbjct: 761  SSDDLLLKLEAGGLIARLSAEQLSDAAPSKAAANLARL-RVGQKLHDLLILSIRKTHRLI 819

Query: 1524 SLGMKSS 1530
             +  K S
Sbjct: 820  QVSNKPS 826



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 23/189 (12%)

Query: 1361 KIEDLSPNMIVQGYVKNVTS-----KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
            ++ED++   +V+G ++ +        G  + L+  +   V   +++D  ++ PEK+F  G
Sbjct: 561  RLEDVTVGAVVKGKIEKLLMGPDGINGLLVSLADGISGLVPGVHMADTKLQHPEKKFREG 620

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1475
              V  R+LSV    +++ +TLK S     S+S I         DI  G     +S G F+
Sbjct: 621  LQVTARILSVNLEKRQLRLTLKKS--LLHSESAIWK----DYRDIAPGN----QSPGTFV 670

Query: 1476 TIENTNLV--------GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
            +I+    V        G   VSE+SE ++ +    +  G+ V V  L VD E+ R+ +  
Sbjct: 671  SIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSC 730

Query: 1528 KSSYFKNDA 1536
            K      DA
Sbjct: 731  KDPSIVTDA 739


>gi|303313265|ref|XP_003066644.1| S1 RNA binding domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
 gi|240106306|gb|EER24499.1| S1 RNA binding domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1888

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 377/1325 (28%), Positives = 663/1325 (50%), Gaps = 134/1325 (10%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
            V +G++V G ++  ++ P+ +  ++  +A G S G +P  H+AD  L+H    +   + G
Sbjct: 623  VTVGAVVKGKIEKLLMGPDGINGLLVSLADGIS-GLVPGVHMADAKLQHP---EKKFREG 678

Query: 722  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             +   ++L ++ E   L L+ K SL++S   +  D   I P +   G   +I E G  ++
Sbjct: 679  LQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQ 738

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F G + GF P S+  +    D S+ + +GQ V  N L V++E GR+ +S K       D 
Sbjct: 739  FYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK-------DP 791

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            S + + +    K A               E    G ++ G V E +   +++  E+   +
Sbjct: 792  SIVTDAY----KSAF--------------ENVHPGLLVSGTVFEKSSDDLLLKLEDGG-L 832

Query: 901  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL-KTVFIDRFREANSNRQAQKKK 959
               ++  QL+ A     +   A +    K   L+ LS+ KT  + +     S + A +K 
Sbjct: 833  IARLSAEQLSDAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKTALEKG 892

Query: 960  RKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNG 1018
                  +DL ++ +V  +V  I  +   V  L      +    V D +  K     F+  
Sbjct: 893  TLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTK-ADFGFMRT 951

Query: 1019 QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV--------------- 1063
            QS+  +V ++     A R +L +K + + E    +R K K++ ++               
Sbjct: 952  QSISCSVSSI--DQDAQRFILTMKPVEKEEEKHERRYKTKNTNELSVSNPVDQDIKSLDD 1009

Query: 1064 ---GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVT 1118
               G + +A IT +K  +L +       GRI ++EV D+  ++ +       +K  Q V 
Sbjct: 1010 FITGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRLYKPKQVVP 1069

Query: 1119 ARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1169
             +I+   +    K         K  ++ELS KPS L   ++    L +   V +G    G
Sbjct: 1070 VKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLDPISLEK---VKVGSSFLG 1126

Query: 1170 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1229
            +V  + ++   L IS  ++ +L I+D + + +   + +R F IG A+   V +++ +K  
Sbjct: 1127 FVNNIGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVAAVDVDKNR 1186

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
            L L  +    G S K + IS+      + +G I+ G+++K+      ++VQ+   L G +
Sbjct: 1187 LDLTAK---HGASSKKLTISD------LSKGMILLGKVTKVTER--QVLVQLNESLVGAI 1235

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
               ++     +D  S  +   F K  VL +         V++ + +    +S   S  LS
Sbjct: 1236 GLLDM-----ADDYSKINPANFHKNAVLRVCV-------VDVDVPNKRVALSVRPSKVLS 1283

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
            T +      +  I+ L  N IV+G+V+ +   G F+ L   + A V +S+LSD Y++  +
Sbjct: 1284 TSLPVEDPEIASIDRLKVNDIVRGFVRRIADIGLFVTLGHNVTAYVRVSDLSDSYLKEWQ 1343

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1469
             EF I ++V GR+  V+P +K+V++TLK S      +  +  L +L  G IV G++++VE
Sbjct: 1344 DEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLK-LKDLKPGQIVTGKVRKVE 1402

Query: 1470 SYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             +G F++I+ T NL GLCH SE++E  + +   +Y  G+ VK KILK+D +K +ISLG+K
Sbjct: 1403 EFGAFVSIDGTANLSGLCHRSEMAERKITDARKLYEQGDIVKAKILKIDLKKDQISLGLK 1462

Query: 1529 SSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESED---GGSLVL 1585
            +SYF ND+D       E + E  EE G      +   + +  +D+  E ED   GG  + 
Sbjct: 1463 ASYFNNDSDEADSDMSEGASE--EESGDDELGGVALKAGIDDEDLSDEGEDIIMGGVDLS 1520

Query: 1586 AQIESRASVPPLEVNLDDEQPDMDNG-ISQNQGHTDEAKTIDEKNNRHA-------KKKE 1637
              +   A    ++V + D   D +   ++     T ++  I +  N  A         K+
Sbjct: 1521 NSLVQSADSDNVDVLMADADGDQEGALVTSGFDWTGDSYEIQKGLNGAAFDSDDENMSKK 1580

Query: 1638 KEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            K+ R+ EI+      L+ + P+T D++ERL+   PNSS +W+KYMAF L + +V+KAR I
Sbjct: 1581 KKRRKAEIQVDRTGDLDANGPQTVDDYERLLLGEPNSSLLWLKYMAFHLELGEVDKAREI 1640

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL++I++ ++ EK N+WVA  NLEN +G   ++++ +VF+RA QY D +++H  +  
Sbjct: 1641 AERALRSISLGQDTEKFNVWVAMLNLENTFGT--DDSLEEVFKRACQYNDAQEIHEKMAS 1698

Query: 1758 LYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPR 1814
            ++ ++++ + ADE+    + KKF  S  ++L     L       +  +A++ RA+ SLP 
Sbjct: 1699 IFIQSDKPEKADEIFQSALKKKFTQSPNLFLNYANFLFDTMAAPDRGRALLPRAMQSLPP 1758

Query: 1815 HKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872
            H H++  S+   LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI++GDVD +R
Sbjct: 1759 HTHVELTSKFGQLEFRSLHGDVERGRTVFEGLLSSFPKRVDLWNILLDLEIKVGDVDQVR 1818

Query: 1873 GLFERAISLS--------------LPPKKMKFLFKKYLEYEKSV--GEEERIEYVKQKAM 1916
             LFER + +               L  K+ KF FKK+L +E+ +  G+++ ++ VK +A 
Sbjct: 1819 RLFERVLGIGRGVGADGSKAGMKKLKDKQAKFFFKKWLTFEEKISNGDDKMVDEVKARAA 1878

Query: 1917 EYVES 1921
            EYV+S
Sbjct: 1879 EYVKS 1883



 Score =  196 bits (497), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 310/1359 (22%), Positives = 561/1359 (41%), Gaps = 127/1359 (9%)

Query: 49   DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE--AVERGLHKKNKKKKKKTERKANETV 104
            D+ P FPRGG ++LT  ER +I   A  D  FE      G    +  + +K E  A E  
Sbjct: 131  DEAPAFPRGGNNALTPLERKQIQIQATRDVLFEQNGTPGGEILNDDSEIEKDEDTAREDA 190

Query: 105  DDLGSLFGDGISGKL----------PRYANKITLKNISAGMKLWGVVAEVNEKDLVICLP 154
                         K           P+  + ++ K I  G K+ G V+ +   ++ + LP
Sbjct: 191  TKASKKKQKAKKHKKSAEALAKPQGPKIES-LSFKRIVPGSKILGQVSSIGTHNISLALP 249

Query: 155  GGLRGLARAADALDPILDNEIEANEDN---------------LLPTIFHVGQLVSCIVLQ 199
              L G      A+  IL  +IE    N                L +   +GQ +   V  
Sbjct: 250  NNLTGYVPWT-AVSKILKGKIEKLLKNAEDDENDEDTDEDDFDLKSYVRLGQYLRASVSS 308

Query: 200  LDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-- 255
              D+   +GK  ++I LS+       GLS   +     + A V S+ED+G I+  GL   
Sbjct: 309  TTDNGHGLGKGKKRIELSVDPQEANAGLSKSDMIVDSTVQASVLSVEDYGLIMDLGLEDG 368

Query: 256  SFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--K 312
            +  GF+    L  +  +  VK G +   VV   +    V+ LS++    +          
Sbjct: 369  NTRGFMSSKELPPSVDLSQVKEGAVFLCVVTGHNAAGNVIKLSANLQKAASAKKSHYLSS 428

Query: 313  GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 372
              +I+  +PG      +  +  NG+  + +      VD  H  +T  T +    Y    K
Sbjct: 429  APTINTFLPGTAAEILLTEVTPNGMTGNIMGMLDVVVDAVHSGSTDETKDLTKKYRPATK 488

Query: 373  VNARILFVDPTSR--AVGLTLNPYLLHNRAPPSHVK----------VGDIYDQSKVVRVD 420
               R++   P+     +G ++  ++L  +  P+ V           +  I  + KV++VD
Sbjct: 489  ATGRLICTYPSDENPKLGFSILDHVL--KFSPTSVADPQDRDDKPAISAIIPEVKVIKVD 546

Query: 421  RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLA 477
              LGL + + +T      ++ IS V + +V  L   E  +K GS    RI+GF  L+ L 
Sbjct: 547  PTLGLYVQLGNT--KHYGFIHISRVKDGKVSSLSSAEGPFKVGSHHEGRIIGFNALDNLF 604

Query: 478  TGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMS 532
               L+    +       DV  G VVKGK+    +  D   G +V    G+  L P  HM+
Sbjct: 605  LLSLEKKVIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGINGLLVSLADGISGLVPGVHMA 664

Query: 533  EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
            + ++  P KKF+ G ++  R+L V  + +++ +T KK+L+ S+ AI   Y +      + 
Sbjct: 665  DAKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSP 724

Query: 591  GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
            G    I+++G  ++FY  V+GF P SE+      +PS  + +GQVV    +S      R+
Sbjct: 725  GTFVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRL 784

Query: 651  NLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
             +S    P+ V++      + V  G LVSG V   + + +++  +  G     +  E L+
Sbjct: 785  VVS-CKDPSIVTDAYKSAFENVHPGLLVSGTVFEKSSDDLLLK-LEDGGLIARLSAEQLS 842

Query: 706  DHL-EHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIH 760
            D     A    + ++ G +   LL+L    ++ L+  S K SL  + ++  LP+    + 
Sbjct: 843  DAAPSKAAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKTALEKGTLPAKFEDLK 902

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
             NS V G V NI + G FV FLG LTGF P+    D         +   QS+  ++  ++
Sbjct: 903  LNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFGFMRTQSISCSVSSID 962

Query: 821  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
             +  R  L++K             +     E    L  S     ++K ++ FI G V + 
Sbjct: 963  QDAQRFILTMKPVEKEEEKHERRYKTKNTNE----LSVSNPVDQDIKSLDDFITGKVTKA 1018

Query: 881  KVHESNDFGVVV----------SFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV--A 928
            ++    D  + V             E  D +  I   +      +   V+   IL V  A
Sbjct: 1019 RITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRLYKPKQVVPVKILGVHDA 1078

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 988
            +  + + +S +T  +  F  +      +       + + + V  +    V  + ++ L L
Sbjct: 1079 RTHKFLPISHRTGKVPVFELSAKPSSLKSPDLDPISLEKVKVGSSFLGFVNNIGDDCLWL 1138

Query: 989  SL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 1046
            ++ P     +    +S D       ++ F  G ++  TV A+       RL L  K    
Sbjct: 1139 NISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVAAVDVDKN--RLDLTAK---- 1192

Query: 1047 TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 1106
               +SSK+    S    G ++  ++T++   ++ ++      G I + ++ DD S +   
Sbjct: 1193 -HGASSKKL-TISDLSKGMILLGKVTKVTERQVLVQLNESLVGAIGLLDMADDYSKINPA 1250

Query: 1107 LFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQR 1166
             F        V    +   + P+ + +    LS++PS +    + + L  E+ +++   R
Sbjct: 1251 NFHK----NAVLRVCVVDVDVPNKRVA----LSVRPSKV----LSTSLPVEDPEIASIDR 1298

Query: 1167 ------VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
                  V G+V ++ +    +T+  ++ A + + D     S L+E+Q  F I + V G +
Sbjct: 1299 LKVNDIVRGFVRRIADIGLFVTLGHNVTAYVRVSD--LSDSYLKEWQDEFQIDQIVRGRI 1356

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
              ++ E K +++ L+      S    D         +  G IV G++ K+      + + 
Sbjct: 1357 TLVDPEAKKVQMTLKQ-----SALDPDYKPPLKLKDLKPGQIVTGKVRKVEEFGAFVSID 1411

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
               +L G  H +E+    ++D    Y++G  VK K+L+I
Sbjct: 1412 GTANLSGLCHRSEMAERKITDARKLYEQGDIVKAKILKI 1450



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 278
            +SLE V+ G     +V +I D    L+   PS  G LP  +++++  +  D+K     G 
Sbjct: 1113 ISLEKVKVGSSFLGFVNNIGDDCLWLNIS-PSVRGKLPIMDISDDLALAGDIKRTFPIGS 1171

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             L+  V ++D  +  + L++     SK +T       I  L  GM++  +V  + E  V+
Sbjct: 1172 ALKVTVAAVDVDKNRLDLTAKHGASSKKLT-------ISDLSKGMILLGKVTKVTERQVL 1224

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD---PTSRAVGLTLNPY- 394
            +       G + +  + + +   N     N HK    R+  VD   P  R V L++ P  
Sbjct: 1225 VQLNESLVGAIGLLDMADDYSKIN---PANFHKNAVLRVCVVDVDVPNKR-VALSVRPSK 1280

Query: 395  LLHNRAPPSHVKVGDIYDQSKVVRVDRG-------LGLLLDIPSTPVSTPAYVTISDVAE 447
            +L    P    ++  I D+ KV  + RG       +GL + +     +  AYV +SD+++
Sbjct: 1281 VLSTSLPVEDPEIASI-DRLKVNDIVRGFVRRIADIGLFVTLGH---NVTAYVRVSDLSD 1336

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKG 504
              +++ + +++    VR RI             LK SA +          D+KPG +V G
Sbjct: 1337 SYLKEWQDEFQIDQIVRGRITLVDPEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTG 1396

Query: 505  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 562
            KV  V+ FGA V   G   +  LC    M+E +I    K ++ G  +  ++L +  K+  
Sbjct: 1397 KVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKITDARKLYEQGDIVKAKILKIDLKKDQ 1456

Query: 563  VT 564
            ++
Sbjct: 1457 IS 1458



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 103/482 (21%), Positives = 190/482 (39%), Gaps = 68/482 (14%)

Query: 1068 QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
            + ++ ++ P L L ++ G   H G IHI+ V D K + + +    FK+G     RII  +
Sbjct: 539  EVKVIKVDPTLGLYVQLGNTKHYGFIHISRVKDGKVSSLSSAEGPFKVGSHHEGRIIGFN 598

Query: 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV----DNEWALL 1181
               ++   FL  L  K        +  +      DV++G  V G + K+    D    LL
Sbjct: 599  ALDNL---FLLSLEKK--------VIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGINGLL 647

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP----F 1237
             +S        +       ++LQ  +++F  G  VT  +LS+N EK+ LRL L+      
Sbjct: 648  -VSLADGISGLVPGVHMADAKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKKSLLHS 706

Query: 1238 QDGISDKTVDISNDNMQ--TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
            +  I     DI+  N    TF+   +              G V+Q    + G +  +E+ 
Sbjct: 707  ESAIWKDYRDIAPGNQSPGTFVSIQE-------------NGAVIQFYGAVRGFLPVSEMS 753

Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1355
               + DP   +  GQ V    L +    +G   V            S     + TD    
Sbjct: 754  EAYIKDPSQHFSIGQVVNVNALSVDAE-QGRLVV------------SCKDPSIVTDA--- 797

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFP- 1413
              +    E++ P ++V G V   +S    + L    L A++    LSD    +P K    
Sbjct: 798  --YKSAFENVHPGLLVSGTVFEKSSDDLLLKLEDGGLIARLSAEQLSDA---APSKAAAN 852

Query: 1414 IGKLVAGR------VLSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIK 1466
            + +L  G+      +LS+    + ++V+ K S      +  +     +L +   V G ++
Sbjct: 853  LARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKTALEKGTLPAKFEDLKLNSSVTGLVR 912

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
             +   G+F+      L G      + ++H+   +  +   + +   +  +D++ +R  L 
Sbjct: 913  NITDDGIFVEFLG-GLTGFLPKRLVDDEHLTKADFGFMRTQSISCSVSSIDQDAQRFILT 971

Query: 1527 MK 1528
            MK
Sbjct: 972  MK 973


>gi|119191894|ref|XP_001246553.1| hypothetical protein CIMG_00324 [Coccidioides immitis RS]
 gi|392864216|gb|EAS34971.2| rRNA biogenesis protein RRP5 [Coccidioides immitis RS]
          Length = 1829

 Score =  447 bits (1151), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 376/1333 (28%), Positives = 663/1333 (49%), Gaps = 150/1333 (11%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
            V +G++V G ++  ++ P+ +  ++  +A G S G +P  H+AD  L+H    +   + G
Sbjct: 564  VTVGAVVKGKIEKLLMGPDGINGLLVSLADGIS-GLVPGMHMADTKLQHP---EKKFREG 619

Query: 722  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             +   ++L ++ E   L L+ K SL++S   +  D   I P +   G   +I E G  ++
Sbjct: 620  LQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGTFVSIQENGAVIQ 679

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F G + GF P S+  +    D S+ + +GQ V  N L V++E GR+ +S K       D 
Sbjct: 680  FYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVVSCK-------DP 732

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV--VSFEEHS 898
            S + + +         +S+  N      V G +     +  + +  D G++  +S E+ S
Sbjct: 733  SIVTDAY---------KSAFENVHPGLLVSGTVFEKSSDDLLLKLEDGGLIARLSAEQLS 783

Query: 899  DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
            D     +   LA   V    +    IL + K  RL+ +S K           S + A +K
Sbjct: 784  DAAPSKSAANLARLRV-GQKLHDLLILSIRKTHRLIQVSNKP----------SLKAALEK 832

Query: 959  KRKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIGYASVSDYNTQKF 1010
                   +DL ++ +V  +V  + ++ + +         LP+      + + +D+     
Sbjct: 833  GTLPAKFEDLKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFG---- 888

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS---------- 1060
                F+  QS+  +V ++     A R +L +  + + E    +R K K++          
Sbjct: 889  ----FMRTQSISCSVSSI--DQDAQRFILTMNPVEKEEEKHERRYKTKNTNELSVSNPVD 942

Query: 1061 --------YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSN 1110
                    +  G + +A IT +K  +L +       GRI ++EV D+  ++ +       
Sbjct: 943  QDIKSLDDFKTGKVTKARITSVKDTQLNVLLADNVQGRIDVSEVFDNWEDIKDRKQPLRL 1002

Query: 1111 FKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDV 1161
            +K  Q V  +I+   +    K         K  ++ELS KPS L   ++G   L +   V
Sbjct: 1003 YKPKQVVPVKILGVHDARTHKFLPISHRTGKVPVFELSAKPSSLKSPDLGPISLEK---V 1059

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
             +G    G+V  + ++   L IS  ++ +L I+D + + +   + +R F IG A+   V 
Sbjct: 1060 KVGNSFLGFVNNMGDDCLWLNISPSVRGKLPIMDISDDLALAGDIKRTFPIGSALKVTVA 1119

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
            +++ +K  L L  +    G S K + IS+      + +G I+ G+++K+      ++VQ+
Sbjct: 1120 AVDVDKNRLDLTAK---HGASSKKLTISD------LSKGMILLGKVTKVTER--QVLVQL 1168

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1341
               L G +   ++     +D  S  +   F K  VL +         V++ + +    +S
Sbjct: 1169 NESLVGAIGLLDM-----ADDYSKINPANFHKNAVLRVCV-------VDVDVPNKRVALS 1216

Query: 1342 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1401
               S  LS  +      +  I+ L  N IV+G+V+ V   G F+ L   + A V +S+LS
Sbjct: 1217 VRPSKVLSASLPVEDPEIASIDRLKVNDIVRGFVRRVADIGLFVTLGHNVTAYVRVSDLS 1276

Query: 1402 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIV 1461
            D Y++  + EF I ++V GR+  V+  +K+V++TLK S      +  +  L +L  G IV
Sbjct: 1277 DSYLKEWQDEFQIDQIVRGRITLVDTEAKKVQMTLKQSALDPDYKPPLK-LKDLKPGQIV 1335

Query: 1462 IGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1520
             G++++VE +G F++I+ T NL GLCH SE++E  V +   +Y  G+ VK KILK+D +K
Sbjct: 1336 TGKVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKK 1395

Query: 1521 RRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESED- 1579
             +ISLG+K+SYF ND+D       E + E  EE G      +     +  +D+  E ED 
Sbjct: 1396 DQISLGLKASYFNNDSDEADSDMSEGASE--EESGDDELGGVALEPGIDDEDLSDEGEDI 1453

Query: 1580 --GGSLVLAQIESRASVPPLEVNLDDEQPDMDNG-ISQNQGHTDEAKTIDEKNNRHA--- 1633
              GG  +   +   A    ++V + D   D +   ++     T ++  I +  N  A   
Sbjct: 1454 IMGGVDLSNSLVQSADSDNVDVLMADADGDQEGALVTSGFDWTGDSYEIQKGLNGAAFDS 1513

Query: 1634 ----KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1689
                  K+K+ R+ EI+      L+ + P+T D++ERL+   PNSS +W+KYMAF L + 
Sbjct: 1514 DDENMSKKKKRRKAEIQVDRTGDLDANGPQTVDDYERLLLGEPNSSLLWLKYMAFHLELG 1573

Query: 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1749
            +V+KAR IAERAL++I++ ++ EK N+WVA  NLEN +G   ++++ +VF+RA QY D +
Sbjct: 1574 EVDKAREIAERALRSISLGQDTEKFNVWVAMLNLENTFGT--DDSLEEVFKRACQYNDAQ 1631

Query: 1750 KVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQ 1806
            ++H  +  ++ ++++ + ADE+    + KKF  S  ++L     L       +  +A++ 
Sbjct: 1632 EIHEKMASIFIQSDKPEKADEIFQSALKKKFTQSPNLFLNYANFLFDTMAAPDRGRALLP 1691

Query: 1807 RALLSLPRHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1864
            RA+ SLP H H++  S+   LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI+
Sbjct: 1692 RAMQSLPPHTHVELTSKFGQLEFRSPHGDVERGRTVFEGLLSSFPKRVDLWNILLDLEIK 1751

Query: 1865 LGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLEYEKSV--GEEERI 1908
            +GDVD +R LFER + +               L  K+ KF FKK+L +E+ +  G+++ +
Sbjct: 1752 VGDVDQVRRLFERVLGIGRGVGADGSKAGMKKLKDKQAKFFFKKWLTFEEKISNGDDKMV 1811

Query: 1909 EYVKQKAMEYVES 1921
            + VK +A EYV+S
Sbjct: 1812 DEVKARAAEYVKS 1824



 Score =  180 bits (457), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 217/852 (25%), Positives = 360/852 (42%), Gaps = 81/852 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE--AVERGLHKKNKKKKKKTERKANETV 104
           D+ P FPRGG ++LT  ER +I   A  D  FE      G    +  + +K E  A E  
Sbjct: 73  DEAPAFPRGGNNALTPLERKQIQIQATRDVLFEQKGTPGGEILNDDSEIEKDEDTAREDA 132

Query: 105 DDLGSLFGDGISGKLPRYANK--------ITLKNISAGMKLWGVVAEVNEKDLVICLPGG 156
                        K      K        ++ K I  G K+ G V+ +   ++ + LP  
Sbjct: 133 KASKKKQKAKKHKKSAEALAKPQGPKIESLSFKRIVPGSKILGQVSSIGTHNISLALPNN 192

Query: 157 LRGLARAADALDPILDNEIEANEDN---------------LLPTIFHVGQLVSCIVLQLD 201
           L G      A+  IL  +IE    N                L +   +GQ +   V    
Sbjct: 193 LTGYVPWT-AVSKILKGKIEKLLKNGEDDENDEDTDDDDFDLKSYVRLGQYLRASVSSTT 251

Query: 202 DDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--F 257
           D+   +GK  ++I LS+       GLS   +     + A V S+ED+G I+  GL     
Sbjct: 252 DNGHGLGKGKKRIELSVDPQEANAGLSKSDMIVDSTVQASVLSVEDYGLIMDLGLEDGET 311

Query: 258 TGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGI 314
            GF+    L  +  +  VK G +   VV   +    V+ LS+D    +            
Sbjct: 312 RGFMSSKELPPSVDLSQVKEGAVFLCVVTGHNAAGNVIKLSADLQKAASAKKSHYLSSAP 371

Query: 315 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
           +I+  +PG      +  +  NG+    +      VD  H  +T  T +    Y    K  
Sbjct: 372 TINTFLPGTAAEILLTEVTPNGMTGKIMGMLDVVVDAVHSGSTDETKDLTKKYRPATKAK 431

Query: 375 ARILFVDPTSR--AVGLTLNPYLLHNRAPPSHVK----------VGDIYDQSKVVRVDRG 422
            R++   P+     +G ++  ++L  +  P+ V           +  I  + KV+++D  
Sbjct: 432 GRLICTYPSDENPKLGFSILDHVL--KFSPTSVADPQDRDDKPAISAIIPEVKVIKIDPT 489

Query: 423 LGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATG 479
           LGL + + +T      +V IS V + +V  L   E  +K GS    RI+GF  L+ L   
Sbjct: 490 LGLYVQLGNT--KHYGFVHISRVKDGKVSSLSSAEGPFKVGSHHEGRIIGFNALDNLFLL 547

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEF 534
            L+    +       DV  G VVKGK+    +  D   G +V    G+  L P  HM++ 
Sbjct: 548 SLEKKVIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGINGLLVSLADGISGLVPGMHMADT 607

Query: 535 EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
           ++  P KKF+ G ++  R+L V  + +++ +T KK+L+ S+ AI   Y +      + G 
Sbjct: 608 KLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKKSLLHSESAIWKDYRDIAPGNQSPGT 667

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
              I+++G  ++FY  V+GF P SE+      +PS  + +GQVV    +S      R+ +
Sbjct: 668 FVSIQENGAVIQFYGAVRGFLPVSEMSEAYIKDPSQHFSIGQVVNVNALSVDAEQGRLVV 727

Query: 653 SFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
           S    P+ V++      + V  G LVSG V   + + +++ +       G +     A+ 
Sbjct: 728 S-CKDPSIVTDAYKSAFENVHPGLLVSGTVFEKSSDDLLLKL-----EDGGLIARLSAEQ 781

Query: 708 LEHATVMKSV-----IKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASH 758
           L  A   KS      ++ G +   LL+L    ++ L+  S K SL  + ++  LP+    
Sbjct: 782 LSDAAPSKSAANLARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKAALEKGTLPAKFED 841

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +  NS V G V NI + G FV FLG LTGF P+    D         +   QS+  ++  
Sbjct: 842 LKLNSSVTGLVRNITDDGIFVEFLGGLTGFLPKRLVDDEHLTKADFGFMRTQSISCSVSS 901

Query: 819 VNSETGRITLSL 830
           ++ +  R  L++
Sbjct: 902 IDQDAQRFILTM 913



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 278
            +SLE V+ G     +V ++ D    L+   PS  G LP  +++++  +  D+K     G 
Sbjct: 1054 ISLEKVKVGNSFLGFVNNMGDDCLWLNIS-PSVRGKLPIMDISDDLALAGDIKRTFPIGS 1112

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             L+  V ++D  +  + L++     SK +T       I  L  GM++  +V  + E  V+
Sbjct: 1113 ALKVTVAAVDVDKNRLDLTAKHGASSKKLT-------ISDLSKGMILLGKVTKVTERQVL 1165

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD---PTSRAVGLTLNPY- 394
            +       G + +  + + +   N     N HK    R+  VD   P  R V L++ P  
Sbjct: 1166 VQLNESLVGAIGLLDMADDYSKIN---PANFHKNAVLRVCVVDVDVPNKR-VALSVRPSK 1221

Query: 395  LLHNRAPPSHVKVGDIYDQSKVVRVDRG-------LGLLLDIPSTPVSTPAYVTISDVAE 447
            +L    P    ++  I D+ KV  + RG       +GL + +     +  AYV +SD+++
Sbjct: 1222 VLSASLPVEDPEIASI-DRLKVNDIVRGFVRRVADIGLFVTLGH---NVTAYVRVSDLSD 1277

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKG 504
              +++ + +++    VR RI             LK SA +          D+KPG +V G
Sbjct: 1278 SYLKEWQDEFQIDQIVRGRITLVDTEAKKVQMTLKQSALDPDYKPPLKLKDLKPGQIVTG 1337

Query: 505  KVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT 562
            KV  V+ FGA V   G   +  LC    M+E ++    K ++ G  +  ++L +  K+  
Sbjct: 1338 KVRKVEEFGAFVSIDGTANLSGLCHRSEMAERKVTDARKLYEQGDIVKAKILKIDLKKDQ 1397

Query: 563  VT 564
            ++
Sbjct: 1398 IS 1399



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 102/481 (21%), Positives = 189/481 (39%), Gaps = 68/481 (14%)

Query: 1068 QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
            + ++ +I P L L ++ G   H G +HI+ V D K + + +    FK+G     RII  +
Sbjct: 480  EVKVIKIDPTLGLYVQLGNTKHYGFVHISRVKDGKVSSLSSAEGPFKVGSHHEGRIIGFN 539

Query: 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV----DNEWALL 1181
               ++   FL  L  K        +  +      DV++G  V G + K+    D    LL
Sbjct: 540  ALDNL---FLLSLEKK--------VIDQPFLRLEDVTVGAVVKGKIEKLLMGPDGINGLL 588

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP----F 1237
             +S        +       ++LQ  +++F  G  VT  +LS+N EK+ LRL L+      
Sbjct: 589  -VSLADGISGLVPGMHMADTKLQHPEKKFREGLQVTARILSVNLEKRQLRLTLKKSLLHS 647

Query: 1238 QDGISDKTVDISNDNMQ--TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
            +  I     DI+  N    TF+   +              G V+Q    + G +  +E+ 
Sbjct: 648  ESAIWKDYRDIAPGNQSPGTFVSIQE-------------NGAVIQFYGAVRGFLPVSEMS 694

Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1355
               + DP   +  GQ V    L +    +G   V            S     + TD    
Sbjct: 695  EAYIKDPSQHFSIGQVVNVNALSVDAE-QGRLVV------------SCKDPSIVTDA--- 738

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFP- 1413
              +    E++ P ++V G V   +S    + L    L A++    LSD    +P K    
Sbjct: 739  --YKSAFENVHPGLLVSGTVFEKSSDDLLLKLEDGGLIARLSAEQLSDA---APSKSAAN 793

Query: 1414 IGKLVAGR------VLSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIK 1466
            + +L  G+      +LS+    + ++V+ K S      +  +     +L +   V G ++
Sbjct: 794  LARLRVGQKLHDLLILSIRKTHRLIQVSNKPSLKAALEKGTLPAKFEDLKLNSSVTGLVR 853

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
             +   G+F+      L G      + ++H+   +  +   + +   +  +D++ +R  L 
Sbjct: 854  NITDDGIFVEFLG-GLTGFLPKRLVDDEHLTKADFGFMRTQSISCSVSSIDQDAQRFILT 912

Query: 1527 M 1527
            M
Sbjct: 913  M 913


>gi|325088403|gb|EGC41713.1| ribosomal RNA processing protein RRP5 [Ajellomyces capsulatus H88]
          Length = 1817

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 396/1428 (27%), Positives = 688/1428 (48%), Gaps = 185/1428 (12%)

Query: 593  ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 648
            +TK+E   G +V+F +   GF   S L  D     SS    Y V    + RI+     S 
Sbjct: 477  VTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVG---FSA 533

Query: 649  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 699
              NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 534  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 592

Query: 700  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
            P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 593  PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 649

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 650  DILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 709

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
            +V++E  ++ +S K    S+       EH              H G+             
Sbjct: 710  NVDAELRKLVVSCKDQLSSTEAYKRALEHI-------------HPGN------------T 744

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI----------QAAILDV 927
            + G V E ++  +++  E+   V      H   G    +G+ +          +  IL++
Sbjct: 745  VSGTVFEKSNEDILLKLEDSGLVARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNM 804

Query: 928  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYL 986
             K+ RL+ ++ K           S +QA+++       +DL     V   V+ I+ +   
Sbjct: 805  QKSHRLIKVTNKP----------SLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLF 854

Query: 987  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 1046
            V  L      +    V D +  K P   +   Q +  TV ++       R +L LK    
Sbjct: 855  VEFLGGLTGFVPKRLVDDDHVNK-PSFGYALAQPISLTVQSIEDDRQ--RFILTLKEPHT 911

Query: 1047 TETSSSKRAKKKSSYD------------------VGSLVQAEITEIKPLELRLKFGIGFH 1088
             +   S R K+  + +                   G + +A++  IK  ++ ++      
Sbjct: 912  GKQRVSDRDKESDNANQSSINPIDGDIKSLDDLTFGRITKAKVVSIKETQINVQLAENIQ 971

Query: 1089 GRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWE 1137
            GRI ++EV D    + +       FK  Q +  RII    A+S++  P   +S    ++E
Sbjct: 972  GRIDVSEVFDSWEAIKDRKQPLRFFKAKQILPVRIIGIHDARSHRFLPISHRSGKYPVFE 1031

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
            LS KPS L  +++    L     V IG    G+V  + ++   ++IS +++ +L + D +
Sbjct: 1032 LSAKPSSLESTDLD---LLSLDKVKIGSAWIGFVNNIGDDCLWISISPNVRGRLRLTDVS 1088

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
             + S L +    F +G A+  HV  ++ +K  L L  +    G S   + IS+       
Sbjct: 1089 DDLSLLSDITTNFPVGSAIKVHVTGVDTDKNRLDLSAK---HGGSPNKLTISD------F 1139

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVL 1317
             +G+I+ GR++++      ++VQ+   + G ++  ++     +D  S  +   F K ++L
Sbjct: 1140 SKGEILLGRVTRVTEH--QVLVQLSDTVVGAINLIDM-----ADDYSKINPADFHKNELL 1192

Query: 1318 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1377
             +         +++  +  L  M S+     S  +  P   +  I  +  N IV+G+V+ 
Sbjct: 1193 RVC-----VVDIDVPKKKILLSMRSSRVLSSSLPIQDP--EISSISQIKVNDIVRGFVRR 1245

Query: 1378 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437
            V   G F+ L   + A V +S+LSD Y++  + EF + +LV GRV+  +P S +++++LK
Sbjct: 1246 VADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLK 1305

Query: 1438 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHV 1496
             S      ++ I  + +L  G  V G+++ VE +G FI I+ T NL GLCH +E++E  V
Sbjct: 1306 QSVLDPNYKTPIT-IKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKV 1364

Query: 1497 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-----DADNLQMSSEEESDEAI 1551
            ++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+     D +N+Q  SEE   E+ 
Sbjct: 1365 EDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKDSDDESDGENVQDKSEENVSESQ 1424

Query: 1552 EEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM--- 1608
             + G                D+++ES D  S+    +E   +    E +  D    M   
Sbjct: 1425 YDGG---------------MDLELESGDDISMGGVDLEDTMNGDNSESDSSDWDVQMTGT 1469

Query: 1609 -DNGIS------------QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1655
             D GI+             N   TDE    D  ++     K+K+ R+QEI+      L+ 
Sbjct: 1470 KDAGITGGLVTSGFDWNGNNTVGTDEDNESDSDSDNKTAVKKKKRRKQEIQVDRTGDLDT 1529

Query: 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1715
            + P++  ++ERL+   PNSS +W+KYMAF L +++V+KAR IAERAL++I+I ++ EK N
Sbjct: 1530 NGPQSVADYERLLLGEPNSSLLWLKYMAFQLELSEVDKAREIAERALRSISIGQDTEKFN 1589

Query: 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1775
            IWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  L  +Y ++ ++  ADEL   +
Sbjct: 1590 IWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHERLTSIYIQSGKHDKADELFQAI 1647

Query: 1776 I-KKFKHSCKVWLRRVQRLL--KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK-- 1830
            + KKF  S  ++L     L   + + E  +A++ RA+ SLP H H+   S+   LEF+  
Sbjct: 1648 LKKKFTQSPNIYLNFATFLFDTRAEPERGRALLPRAIQSLPTHTHVDITSKFGQLEFRSP 1707

Query: 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP------ 1884
            NG  +RGR++FEG++S +PKR DLW++ LD EI+ GD++ +R LFER + L  P      
Sbjct: 1708 NGDIERGRTIFEGLISSFPKRVDLWNVLLDLEIKNGDMEQVRRLFERVLGLGHPIAADGT 1767

Query: 1885 --------PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
                     K+ KF FKK+L +E+  G+E+ ++ VK +A +YV +  A
Sbjct: 1768 KPGAKRLKDKQAKFFFKKWLAFEEKTGDEKMVDEVKARAADYVRAIKA 1815



 Score =  180 bits (456), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 203/842 (24%), Positives = 358/842 (42%), Gaps = 62/842 (7%)

Query: 52  PVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKN---KKKKKKTERKANETVDDLG 108
           P FPRGG + L+  E+ +IH +   +    ++G   ++    +   + +R + E      
Sbjct: 68  PAFPRGGANILSPLEQKQIHIQATRDVLFEQKGAQAQDDIDNEDGTQKKRSSKEFGIKST 127

Query: 109 SLFGDGISGKLPRYANK-------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG-- 159
                     +P+ + K       +  K I  G K+ G V+ +N  D+ + LP  L G  
Sbjct: 128 KGKTKSKKHTIPQASTKEEVRIEGLNFKRIVVGSKILGQVSSINAHDIGLSLPNNLTGYI 187

Query: 160 -LARAADALDPILDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQLDDD- 203
            L   +  L   ++  + ++++                L + F +GQ +   V   + + 
Sbjct: 188 PLTAVSKTLQQKIEKLLNSSQEEDDNSDGDDGGDGDLDLKSYFKLGQYLRAAVTSTETEV 247

Query: 204 --KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTG 259
              K  GK+ I LS+       GLS   +     + A V S+EDHG ++  GL      G
Sbjct: 248 NHGKVKGKKHIELSVDPREANSGLSKSDLVVNATVQASVLSVEDHGLVMDLGLEDGQTRG 307

Query: 260 FLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISI 316
           F+    +  +   + +K G +   VV   +    VV LS++  T              +I
Sbjct: 308 FMSSKEIPHDLELLQIKEGTVFLCVVTGHNANGSVVKLSANLPTAGSIKKSHFLASAPTI 367

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
           +  +PG      +  +   G+    +      VDI     T    +    Y+   K+  R
Sbjct: 368 NSFLPGTAAEILLTQVTSTGMAGKIMGMLDAVVDIVQSGATAGKEDITARYHVGAKIKGR 427

Query: 377 ILFVDPTSRAVGLTLN---------PYLLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLL 426
           ++   PT+  + L  +         P +L +++    V  +  I  + KV +V+ GLG+ 
Sbjct: 428 LICTFPTAEPLKLGFSILDHVVKFTPTVLDHKSSCEGVPAISAIVPEVKVTKVEPGLGVY 487

Query: 427 LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
           +              +SD   + +   +  Y   S    RI+GF  L+ L    L+    
Sbjct: 488 VQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVGFSALDNLYLLSLERKVI 547

Query: 487 EGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +       DV  G VVKGK+    I  D   G IV    G+  L P  HMS+ ++  P K
Sbjct: 548 DQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGISGLVPGMHMSDTKLQHPEK 607

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           KF+ G ++  R+L V  + +++ +T KKTL+ S+ +    Y++      + G I  I+ H
Sbjct: 608 KFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYSDILPGNQSPGTIISIQSH 667

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMK 657
           G  V+FY  V+GF P SE+      +P+  +++GQVV    ++     R++ +S    + 
Sbjct: 668 GAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNVDAELRKLVVSCKDQLS 727

Query: 658 PTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVM 714
            T   +  L  +  G+ VSG V   +   +++ +   G     +  EH++D         
Sbjct: 728 STEAYKRALEHIHPGNTVSGTVFEKSNEDILLKLEDSGLV-ARLNAEHVSDGQASRNGAA 786

Query: 715 KSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVC 770
            + I+ G + ++LL+L+ + S+ L+  + K SL  + Q  +LP+    +   S V G+V 
Sbjct: 787 LARIRVGQKLNELLILNMQKSHRLIKVTNKPSLKQARQRGELPAKFEDLEEGSKVTGFVK 846

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           NII  G FV FLG LTGF P+    D      S  Y + Q +   +  +  +  R  L+L
Sbjct: 847 NIIADGLFVEFLGGLTGFVPKRLVDDDHVNKPSFGYALAQPISLTVQSIEDDRQRFILTL 906

Query: 831 KQ 832
           K+
Sbjct: 907 KE 908



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 22/248 (8%)

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
            ++I     G ++  RV  + E+ V++       G +++  + + +   N   D+++++ +
Sbjct: 1134 LTISDFSKGEILLGRVTRVTEHQVLVQLSDTVVGAINLIDMADDYSKIN-PADFHKNELL 1192

Query: 374  NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGL 423
               ++ +D   + + L++    + + + P         S +KV DI  +  V RV D GL
Sbjct: 1193 RVCVVDIDVPKKKILLSMRSSRVLSSSLPIQDPEISSISQIKVNDIV-RGFVRRVADNGL 1251

Query: 424  GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
             + L    T     AYV ISD+++  +++ + +++    VR R++            LK 
Sbjct: 1252 FVTLGHDVT-----AYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLKQ 1306

Query: 484  SAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVK 538
            S  +       T  D+K G  V GKV  V+ FGA +   G   +  LC    M+E ++  
Sbjct: 1307 SVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVED 1366

Query: 539  PGKKFKVG 546
              K F+ G
Sbjct: 1367 ARKLFEKG 1374


>gi|158186708|ref|NP_001101074.2| programmed cell death protein 11 [Rattus norvegicus]
          Length = 1876

 Score =  444 bits (1143), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 413/1480 (27%), Positives = 685/1480 (46%), Gaps = 174/1480 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNK--------KKKKKTERKANET 103
            FPRGG     + E+  +   E D  F+ + E G  K+ K        KK K  +RK+N++
Sbjct: 8    FPRGGTRKPHKSEKSSQPVVEQDNLFDISTEEGSVKRKKSQKGPAKTKKLKIEKRKSNKS 67

Query: 104  VDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA 163
            + +   +               ++L+++  GM++ G V EVNE +LV+ LP GL+G  + 
Sbjct: 68   MKEKFEI---------------LSLESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQV 112

Query: 164  ADALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSL 216
             +  D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+
Sbjct: 113  TEICDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSV 170

Query: 217  RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSG 271
                + K LS E ++ GM+LT  V S+EDHGY++  G+     FL      E     N G
Sbjct: 171  NPKRVNKVLSAEALRPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLSLQKAQEYIRQKNKG 230

Query: 272  IDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 331
               K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ 
Sbjct: 231  AKFKVGQYLTCVVEELKSNGGVVSLSVEHSQVSSAFATEEQSWNLNNLLPGLVVRAQVQK 290

Query: 332  ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL 391
            + + G+ L+FLT+FTG VD  HL+           Y+  + V A IL V P +R V L+L
Sbjct: 291  VTQFGLQLNFLTFFTGLVDFMHLE-----PKKMGSYSSKQTVKACILCVHPRTRVVRLSL 345

Query: 392  NPYLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 448
             P  LH   P + +   ++G + D + V       G +  +    +   AY  +S +++ 
Sbjct: 346  RPIFLHPGRPLTRISYQQLGTVLDDASVEGFFEKAGAIFRLRDGVL---AYARLSHLSDS 402

Query: 449  EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
            +     + +K GS  R RI+ +  ++ LA   L+ S        + D+K G +VKGKV+A
Sbjct: 403  KKAFSAEAFKLGSTHRCRIIDYSQMDELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLA 462

Query: 509  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHK 566
            +  FG +V+    ++ L P  H+++  +  P KKF  G E+  RVL    ++K++ +T K
Sbjct: 463  LKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 567  KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
            KTLV SKL  ++ Y +A   L THG I +++ +GC V+FYN VQG  P+ EL      +P
Sbjct: 523  KTLVTSKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDP 582

Query: 627  SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----------LGSLVSGV 676
              +++ GQVVK  +++  P+  R+ LSF +      +D+ VK           G LV   
Sbjct: 583  ERVFYTGQVVKVAVLNCEPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVK 642

Query: 677  VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN 736
            V   T N + V ++        +PT HL+DH+ +  ++   ++ G    ++L L     +
Sbjct: 643  VLEKTKNGLEVAILPHNIP-AFLPTPHLSDHVANGPLLHHWLQTGDTLHRVLCLSQSEKH 701

Query: 737  LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
            +LL  K +L+++ +  Q P   S I P  ++ G+V +I + G FV+F   L+G +P++  
Sbjct: 702  ILLCRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIM 761

Query: 795  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEE 851
             D      S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE
Sbjct: 762  SDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEE 821

Query: 852  KIAMLQ-SSKHNGSELKWVEGFIIGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQL 909
               +    S  +   ++ +     G V++  V E  + G VV       D+    + +  
Sbjct: 822  LQGIRSLMSNQDSVLIQTLADMTPGMVLDAMVQEVLENGSVVFGGGPVPDLILRASRYHR 881

Query: 910  AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
            AG  +E G   +  +L V   +  V +SL    ++R           K ++ R+ S+   
Sbjct: 882  AGQELEPGQKKKVVVLHVDALKLEVHVSLHQDLVNR-----------KARKLRKNSR--- 927

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMAL 1028
             HQ    IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+   
Sbjct: 928  -HQ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTT 983

Query: 1029 PSSSTAGRLLLL---------LKAISETETSSSK--------------RAKKKSSYDVGS 1065
                T G +L +         + A  ++ET   K              R+KK  S  +G 
Sbjct: 984  EPGVT-GLILAVEGPASKRIRMPAQRDSETVDDKGEEEEEEEEEDLTVRSKKSHSLAIGD 1042

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA-- 1123
             V   I  +K     +    GF G IH++ + DD    V    +  K G+ VTAR+I   
Sbjct: 1043 KVTGTIKSVKATHAVVTLDDGFIGCIHVSRILDDVPEGVSPT-TTLKAGKKVTARVIGGR 1101

Query: 1124 --KSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVS---------IGQRV 1167
              K++K  P     F   + ELS++PS L     G         VS          GQ V
Sbjct: 1102 DVKTSKFLPISHPRFVLTILELSVRPSELK----GDYRALNTHSVSPMEKIRQYQAGQTV 1157

Query: 1168 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
            T ++  Y V  +W  + I   ++ ++ +L ++     L+   ++F IG+A+   V+  + 
Sbjct: 1158 TCFLKKYNVMKKWLEVDIEPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQAIKATVVGPDI 1217

Query: 1226 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             +  L L ++ P++                  + EGD+  GR+ K+L    GL V     
Sbjct: 1218 PRAFLCLSLIGPYK------------------LEEGDVAMGRVLKVLPN-KGLTVSFPFG 1258

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1344
              G+V    L +    +PL+ +   + V+C +L  +  +     + LSLR      SS  
Sbjct: 1259 RIGKVSVFHLSDSYSEEPLTDFCPQKIVRCYILSTAHRM-----LALSLR------SSRT 1307

Query: 1345 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1404
            + +  + ++ P   +  IED+    +++GYVK++      I L   +   V  S++S   
Sbjct: 1308 NKETKSKIEDP--EVNSIEDIQAGQLLRGYVKSILPSSVVIGLGPSVMGLVKHSHVSQCV 1365

Query: 1405 VESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
                E   K  P GKLV  RVL V P    +E++L  SD+
Sbjct: 1366 SREKELYDKCLPEGKLVTARVLCVNPKKNLIELSLLPSDT 1405



 Score =  278 bits (710), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 137/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)

Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1586 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1645

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1646 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLAKVFERAVQYNEPLKVFLHLAD 1703

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1816
            +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +
Sbjct: 1704 IYTKSEKFKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPTKE 1763

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
            H+  I + A LEF+ G  +R +++FE  L+ YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1764 HVDVIVKFAQLEFQLGDVERAKAIFENTLTTYPKRTDVWSVYIDMTIKHGSQKEVRDIFE 1823

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1824 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1868



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 145/336 (43%), Gaps = 44/336 (13%)

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
            EP ++  +  +    + V   +L ++   +++RL LRP           IS   + T + 
Sbjct: 314  EPKKMGSYSSK----QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTVLD 369

Query: 1259 EGDIVG-----GRISKILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFV 1312
            +  + G     G I ++  GV           Y R+ H ++ K    ++    +  G   
Sbjct: 370  DASVEGFFEKAGAIFRLRDGVLA---------YARLSHLSDSKKAFSAE---AFKLGSTH 417

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            +C++++ S+         LSLR S+              +  P     + +D+    IV+
Sbjct: 418  RCRIIDYSQMDELAL---LSLRKSI--------------IAAP---FLRYQDIKTGTIVK 457

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G  + +  ++   V   +L+D  +++PEK+F  G  V  RVL  +P +K++
Sbjct: 458  GKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCRVLLCDPEAKKL 517

Query: 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
             +TLK +   T+    I    +   G    G I RV+ YG  +   N ++ GL    ELS
Sbjct: 518  IMTLKKT-LVTSKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYN-DVQGLVPKHELS 575

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
              H+ + E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 576  AQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK 611



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            I  G IV G++  +     G++V++G  + G V    L +I + +P   ++ G  VKC+V
Sbjct: 450  IKTGTIVKGKVLALKPF--GMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCRV 507

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L      +      ++L+ +L              V +    +   ED  P +   G + 
Sbjct: 508  LLCDPEAKKLI---MTLKKTL--------------VTSKLPAITCYEDAKPGLQTHGVII 550

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             V   GC +     +   V    LS  ++  PE+ F  G++V   VL+ EP  +R+ ++ 
Sbjct: 551  RVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSF 610

Query: 1437 KTSDSRTASQSEINNL----SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            K           + N     S ++ G +V  ++      GL + I   N+        LS
Sbjct: 611  KLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHNIPAFLPTPHLS 670

Query: 1493 EDHVDN 1498
             DHV N
Sbjct: 671  -DHVAN 675


>gi|425767647|gb|EKV06215.1| RRNA biogenesis protein RRP5, putative [Penicillium digitatum Pd1]
 gi|425769195|gb|EKV07695.1| RRNA biogenesis protein RRP5, putative [Penicillium digitatum PHI26]
          Length = 2158

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 398/1516 (26%), Positives = 740/1516 (48%), Gaps = 178/1516 (11%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--- 554
            PG   +  +  V S G I +  G + A   L   S    +   KK+K+GA++  R++   
Sbjct: 372  PGTAAEILLTEVTSNGMIGKIMGMLDATVDLVQSSINGKIDLEKKYKIGAKIKGRIISTF 431

Query: 555  -GVKSKRITVTHKKTLVK----SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
               +  +++ +    ++K    ++    S  A A   +I    + K++ HG  V    G 
Sbjct: 432  PAAEPLKVSFSMLDHILKLSSDARGPGSSDDAPAISAIIPEVKVVKVD-HGLGVYARIGE 490

Query: 610  ---QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF----MMKPT 659
                GF   S L    ++   E S  + +  V + R++          LSF    + +P 
Sbjct: 491  TKHMGFVHMSRLSDGKVETIDESSGAFQLDAVHEARVIGYNSIDNLYILSFEKSVIEQPF 550

Query: 660  RVSEDDLVKLGSLVSGVVDVVTPNA----VVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
               ED  V +G++V G V+ +   A     ++  +A G + G +P+ H AD +      K
Sbjct: 551  LRVED--VNVGAIVKGKVEKLLIGADGMNGLIVNLADGIT-GLVPSMHFADTMLQFPEKK 607

Query: 716  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
               + G +   ++L ++ E   + L+ K SL+NS   +  D   I P++   G + N+  
Sbjct: 608  --FREGQKLSLRILSVNLEKRQIRLTLKKSLLNSESTIWKDYKDITPSAQSPGTIVNLQS 665

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             G  V+F G + GF P S+  +    D ++ + +GQ V  + L V++  GR+ +S K   
Sbjct: 666  HGAVVQFYGEVRGFLPVSEMSEAYIQDPAQHFRLGQVVNVHALSVDASLGRLAVSCKDP- 724

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
              ST     +E F                      E    G ++ G V E ++  V++  
Sbjct: 725  --STFTEKYREAF----------------------ENLHPGHLVTGVVFEKSNDDVLLKL 760

Query: 895  EEHSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFID 944
            +E   V      H + G   +  S++             +L++ +A RL+ +S +     
Sbjct: 761  DESGLVARLDAAHLIDGPPSKQNSMLSKLRVGQKLNDLLVLNIQRAHRLIKVSSRASLKK 820

Query: 945  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 1004
              ++ N   Q ++ +   E S   G       I  I  +   V  L      +    + D
Sbjct: 821  AAKQKNIPGQFEEVQ---EGSLVTGF------IRNITPDGVFVEFLGGLTGLLPKRLIED 871

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK------ 1058
             N ++ P       Q+++  V ++       R +L +K +  T+ +  K AK+       
Sbjct: 872  ANLEQ-PHYGLSKAQTIVVNVQSV--DQDLKRFILSMKPVQATQAAPKKVAKQTDETVVN 928

Query: 1059 ---------SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NL 1107
                     S +  G +V+ ++  IK  ++ ++      GRI ++E+ DD  ++ +    
Sbjct: 929  PIDDSIESMSDFTFGRIVECKVVSIKATQINVQLADNVQGRIDVSEIFDDWKDIKDRKQP 988

Query: 1108 FSNFKIGQTVTARII-----AKSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFE 1157
               FK  QT++ARI+     A+++K         K  ++ELS+KPS +  +   + L  E
Sbjct: 989  LRFFKAKQTLSARILLGVHDARNHKFLPISHRTGKYPVFELSLKPSYVKATN-PAPLNME 1047

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
            +  V +G    G+V  V ++   + +S +++ +L  +D++ + S L E ++ F IG A+ 
Sbjct: 1048 Q--VQVGSSWVGFVNNVADDCLWVNLSPNVRGRLRFMDASDDLSLLTEIEKNFPIGSALK 1105

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              V ++N EK  L L  +   D ++   + +           G ++ GRI+K+      L
Sbjct: 1106 VQVTAVNTEKGHLNLSAKQGYDKLTFGDISV-----------GMVLPGRITKVTER--QL 1152

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1337
            ++Q+G  L G V+ T++ +       + +++ + ++  V+ + ++ +    + LSLR S 
Sbjct: 1153 IMQLGESLVGAVNLTDIADDYSKANPTVHNKNEVLRACVIAVDKSNK---KIALSLRPS- 1208

Query: 1338 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1397
                      +S+ +    + +  ++D+  N I++G+V+ VT  G F+ +S  + A V +
Sbjct: 1209 --------KVMSSSLPVQDREISSLKDVKLNDIIRGFVRRVTDSGLFVAVSNDITAYVRV 1260

Query: 1398 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1457
            S+LSD Y++  +  F   +LV G+V  V+    +++++LK S      ++ I  L +L V
Sbjct: 1261 SDLSDSYLKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPIA-LKDLKV 1319

Query: 1458 GDIVIGQIKRVESYGLFITIE-NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
            G IV G++++VE +G FI I+ ++N+ GLCH SE++E  V++   +Y  G+ VK K++K+
Sbjct: 1320 GQIVTGKVRKVEEFGAFIVIDGSSNISGLCHRSEMAEKRVEDARKLYDEGDAVKAKVIKI 1379

Query: 1517 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE--EVGSYNRSSLLENSS-VAVQDM 1573
            D E ++IS  +K+S+F+++ +      +  S + +   E+G  +     ++   +   D+
Sbjct: 1380 DLESKKISFSLKASHFQDEEEMDSEDEDSMSIDGLGGVELGEDDSEDKDDDDESMGGVDV 1439

Query: 1574 DMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID-----EK 1628
            +  SED  S     ++    VP        ++P  + G+  +         ID     + 
Sbjct: 1440 EDSSEDDES-----VDGDEDVPM-------QKPSKNGGLGSSGFDWSGTAQIDAAARSDS 1487

Query: 1629 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1688
            ++  + KK+K+ R+ EI+      L+ + P++  +FERL+   P+SS +W++YMAF L +
Sbjct: 1488 DDEGSNKKKKKSRKAEIQVDRTGDLDANGPQSVADFERLLLGEPDSSLLWLQYMAFQLEL 1547

Query: 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748
             + EKAR+IAERAL+TI + ++ EKLNIWVA  N+EN YG+  ++++ +VF+RA QY DP
Sbjct: 1548 GETEKARAIAERALRTITMGQDAEKLNIWVALLNMENTYGD--DDSLEEVFKRACQYNDP 1605

Query: 1749 KKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQQQ--EGVQAV 1804
            ++++  ++ +Y ++ +N+ A +L Y  +KK     S K +      L       +  +A+
Sbjct: 1606 QEIYERMISIYIQSGKNQKASDLFYDALKKKVSSQSPKFFYNYASFLFDTMASPDRARAL 1665

Query: 1805 VQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862
            + RAL SLP H H++  S+ A LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD E
Sbjct: 1666 LPRALQSLPAHTHVETTSKFAQLEFRSANGDVERGRTIFEGLLSSFPKRIDLWNVLLDLE 1725

Query: 1863 IRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLEYEKSV---GEE 1905
            I++GD + +R LFER + L               L PK+ +FLFKK+L +E+ +   G+E
Sbjct: 1726 IKVGDAEQVRRLFERVLGLQGGKKGPVSVDASKKLKPKQARFLFKKWLSFEEGLATDGDE 1785

Query: 1906 ERIEYVKQKAMEYVES 1921
            + +E VK +A+ YV+S
Sbjct: 1786 KMVEEVKARAVTYVKS 1801



 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 237/923 (25%), Positives = 399/923 (43%), Gaps = 109/923 (11%)

Query: 1   MAASSRKS---QKKSSKDGPKFNKASKNQFKNSKKQIND-----AVEAQDLALPPDDDVP 52
           MA   RK    ++ +++   K  K    + K   K+ ND     A +  +L++  DD+ P
Sbjct: 1   MAPIKRKGNAPEENTARQPQKRAKVGAEEVKKDHKKSNDTTTSIAGKVSELSVLRDDE-P 59

Query: 53  VFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERK--ANETVDDL- 107
            FPRGG   LT  ER +I   A  D  FE  E G    NKK  +KT     A E+ +D+ 
Sbjct: 60  SFPRGGASVLTPLERKQIQIQANRDVLFEQKESG----NKKSSQKTPSNEFAEESDNDVE 115

Query: 108 ------------GSLFGDGISGKLPRYANK--------ITLKNISAGMKLWGVVAEVNEK 147
                                    + AN         ++ K I  G  + G V+ +N  
Sbjct: 116 MEDEETTTTTKKSRKKKSKSKKSADKEANDKQDVRIEGLSFKRIVPGAMILGQVSSINAH 175

Query: 148 DLVICLPGGLRG---LARAADALDPILDNEIEANEDNL------------LPTIFHVGQL 192
           D+ + LP  L G   L   +  L+  L+  +    ++             L   F++GQ 
Sbjct: 176 DIGLSLPNNLTGYVPLTSVSKGLEDRLEKMLNDEGEDDDAEDSSDDESFDLKDHFYLGQY 235

Query: 193 VSCIVLQLD---DDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
           +   V+      DD K   K++I LS+       G S   +     + A V S+EDHG +
Sbjct: 236 LRAFVVSTGSNPDDPKAKSKKRIELSVDPRQTNTGFSKSDLVVNSAVQASVVSVEDHGVV 295

Query: 250 LHFGL--PSFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 306
           +  G+      GF+       N     +K G +   +V   + +  V+ LSS+  T +  
Sbjct: 296 MDLGIEGSELKGFMSSKETDPNVDYSSIKEGSVFLCMVTGQNASGNVIKLSSNFQTSASI 355

Query: 307 VTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 364
              +      +I+  +PG      +  +  NG++   +     TVD+        + N K
Sbjct: 356 KKSNYLSSAPTINTFLPGTAAEILLTEVTSNGMIGKIMGMLDATVDLVQ-----SSINGK 410

Query: 365 ND----YNQHKKVNARILFVDPTSRA--VGLTLNPYLLH----NRAPPSH---VKVGDIY 411
            D    Y    K+  RI+   P +    V  ++  ++L      R P S      +  I 
Sbjct: 411 IDLEKKYKIGAKIKGRIISTFPAAEPLKVSFSMLDHILKLSSDARGPGSSDDAPAISAII 470

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRIL 468
            + KVV+VD GLG+   I  T      +V +S +++ +V  +++    ++  +    R++
Sbjct: 471 PEVKVVKVDHGLGVYARIGET--KHMGFVHMSRLSDGKVETIDESSGAFQLDAVHEARVI 528

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVK 523
           G+  ++ L     + S  E       DV  G +VKGKV    I  D   G IV    G+ 
Sbjct: 529 GYNSIDNLYILSFEKSVIEQPFLRVEDVNVGAIVKGKVEKLLIGADGMNGLIVNLADGIT 588

Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYA 581
            L P  H ++  +  P KKF+ G +L  R+L V  + ++I +T KK+L+ S+  I   Y 
Sbjct: 589 GLVPSMHFADTMLQFPEKKFREGQKLSLRILSVNLEKRQIRLTLKKSLLNSESTIWKDYK 648

Query: 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
           + T    + G I  ++ HG  V+FY  V+GF P SE+      +P+  + +GQVV    +
Sbjct: 649 DITPSAQSPGTIVNLQSHGAVVQFYGEVRGFLPVSEMSEAYIQDPAQHFRLGQVVNVHAL 708

Query: 642 SSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
           S   +  R+ +S    P+  +E      + +  G LV+GVV   + + V++ +   G   
Sbjct: 709 SVDASLGRLAVS-CKDPSTFTEKYREAFENLHPGHLVTGVVFEKSNDDVLLKLDESGLV- 766

Query: 697 GTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ-- 751
             +   HL D        M S ++ G + + LLVL+ + ++ L+  S++ SL  +A+Q  
Sbjct: 767 ARLDAAHLIDGPPSKQNSMLSKLRVGQKLNDLLVLNIQRAHRLIKVSSRASLKKAAKQKN 826

Query: 752 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY---V 808
           +P     +   S+V G++ NI   G FV FLG LTG  P+    D   A+L + +Y    
Sbjct: 827 IPGQFEEVQEGSLVTGFIRNITPDGVFVEFLGGLTGLLPKRLIED---ANLEQPHYGLSK 883

Query: 809 GQSVRSNILDVNSETGRITLSLK 831
            Q++  N+  V+ +  R  LS+K
Sbjct: 884 AQTIVVNVQSVDQDLKRFILSMK 906



 Score = 61.6 bits (148), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 165/379 (43%), Gaps = 43/379 (11%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + ++ +  G    G V  V +  L + L   +RG  R  DA D + L  EIE N      
Sbjct: 1044 LNMEQVQVGSSWVGFVNNVADDCLWVNLSPNVRGRLRFMDASDDLSLLTEIEKN------ 1097

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  ++ +K         L+L     Y  L+   +  GMVL   +  + 
Sbjct: 1098 --FPIGSALKVQVTAVNTEKGH-------LNLSAKQGYDKLTFGDISVGMVLPGRITKVT 1148

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+  G  S  G +   ++A++      P +     +L+  V ++D++ K + LS  
Sbjct: 1149 ERQLIMQLG-ESLVGAVNLTDIADDYS-KANPTVHNKNEVLRACVIAVDKSNKKIALSLR 1206

Query: 300  PDTV--SKCVTKD-----LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 352
            P  V  S    +D     LK + ++ ++ G      V+ + ++G+ ++     T  V + 
Sbjct: 1207 PSKVMSSSLPVQDREISSLKDVKLNDIIRGF-----VRRVTDSGLFVAVSNDITAYVRVS 1261

Query: 353  HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVG 408
             L +++    WK+ +   + V  ++ FVD     + L+L   +L  + +AP +   +KVG
Sbjct: 1262 DLSDSY-LKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPIALKDLKVG 1320

Query: 409  DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL 468
             I    KV +V+     ++   S+ +S   +   S++AE+ V    K Y EG  V+ +++
Sbjct: 1321 QIV-TGKVRKVEEFGAFIVIDGSSNISGLCHR--SEMAEKRVEDARKLYDEGDAVKAKVI 1377

Query: 469  GFRHLEGLATGILKASAFE 487
                     +  LKAS F+
Sbjct: 1378 KIDLESKKISFSLKASHFQ 1396



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 130/291 (44%), Gaps = 50/291 (17%)

Query: 124  NKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLL 183
            +K+T  +IS GM L G + +V E+ L++ L   L G     D    I D+  +AN     
Sbjct: 1127 DKLTFGDISVGMVLPGRITKVTERQLIMQLGESLVGAVNLTD----IADDYSKAN----- 1177

Query: 184  PTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS-LLYKGL--------SLETVQEGM 234
            PT+ +  +++   V+ +D   K     KI LSLR S ++   L        SL+ V+   
Sbjct: 1178 PTVHNKNEVLRACVIAVDKSNK-----KIALSLRPSKVMSSSLPVQDREISSLKDVKLND 1232

Query: 235  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK----PGLLLQGVVRSIDRT 290
            ++  +V+ + D G  +       T ++  ++L+++   + K    P  L++G V  +D  
Sbjct: 1233 IIRGFVRRVTDSGLFVAVS-NDITAYVRVSDLSDSYLKEWKDSFQPDQLVKGKVTFVDAE 1291

Query: 291  RKVVYLS-----SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 345
            +  + LS      DP+  +    KDLK         G +V+ +V+ + E G  +      
Sbjct: 1292 QGKLQLSLKESVLDPNFKAPIALKDLK--------VGQIVTGKVRKVEEFGAFI----VI 1339

Query: 346  TGTVDIFHLQNTFPTT-----NWKNDYNQHKKVNARILFVDPTSRAVGLTL 391
             G+ +I  L +          + +  Y++   V A+++ +D  S+ +  +L
Sbjct: 1340 DGSSNISGLCHRSEMAEKRVEDARKLYDEGDAVKAKVIKIDLESKKISFSL 1390


>gi|19075390|ref|NP_587890.1| U3 snoRNP-associated protein Rrp5 (predicted) [Schizosaccharomyces
            pombe 972h-]
 gi|74582568|sp|O74835.1|RRP5_SCHPO RecName: Full=rRNA biogenesis protein rrp5; AltName: Full=Ribosomal
            RNA-processing protein 5; AltName: Full=U3 small
            nucleolar RNA-associated protein rrp5; Short=U3
            snoRNA-associated protein rrp5
 gi|3650378|emb|CAA21087.1| U3 snoRNP-associated protein Rrp5 (predicted) [Schizosaccharomyces
            pombe]
          Length = 1690

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 389/1382 (28%), Positives = 653/1382 (47%), Gaps = 187/1382 (13%)

Query: 609  VQGFAPRSEL------GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-----K 657
            + GFA  S L      G+ P   P   Y V    + RI++         LSF       +
Sbjct: 424  ISGFAHISRLSDKKVAGISPNSGP---YKVDSTHEARIINYSYVDNLYILSFQQSVLNQQ 480

Query: 658  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATV 713
              R+ +   +++G  V G +  + P  +VV  I++G + G +P+ H+AD      E    
Sbjct: 481  FLRIED---IEVGQFVDGTIAKLIPQGIVV-TISEGIN-GLVPSTHMADIALQFPERRFK 535

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
            + S +K      ++L  +     +LL+ K SL+N+   L  D     P +   G +  I 
Sbjct: 536  VGSSVKC-----RVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIF 590

Query: 774  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            E G  V F   +  F P S+  +    D  + + VGQ++   I+  + E  ++ +  ++ 
Sbjct: 591  EDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQ 650

Query: 834  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
               S DA                         L+  E    GSV+ G V +  +  V+V 
Sbjct: 651  ---SWDAK-----------------------RLERFENIKAGSVLSGIVLQKTEDSVIVD 684

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVI-----------QAAILDVAKAERLVDLSLKTVF 942
              +   V G IT  QL    +   S +           +  +L    +++L+ LSLK   
Sbjct: 685  LGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSL 742

Query: 943  IDRFREANSNRQAQKKKRKREASKDLGV---HQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
            ++  +E   NR        +E  K  G      T    VE    + LV  +P+   S  Y
Sbjct: 743  VEAAKE---NRMPINITDLKEGIKYFGFVRNATTFGVFVEFC--DGLVALVPKAYISEEY 797

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSSTAGRLLLLLKAISET 1047
              V        P   +   QSV    +++            P +    + +  +++  + 
Sbjct: 798  VPV--------PSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDI 849

Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 1105
            +    +  KK   Y  G +  A +T  K  +L +      HGR+ ++EV D+   +V+  
Sbjct: 850  DNPVDETIKKTYDYVAGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPN 909

Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLL 1155
                 F  G  +  R++   +  + K          K FL ELS++PS+L +     K  
Sbjct: 910  KPLKRFHKGDKIRVRVLGIHDSRNHKFLPISHRVSPKQFL-ELSVRPSILNMEPFSMK-- 966

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
              E     G  VTG+V  V  E   ++++  +  ++ ILD   +  EL   Q+ F +GKA
Sbjct: 967  --EPQFKKGDEVTGFVNNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKA 1024

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +  +V  +N E  +    + P Q G  + T              G  + G+++ +     
Sbjct: 1025 IKCYV--VNAEDSITLSAIGPLQ-GFENLT-------------PGSRLVGKVTNV--NEA 1066

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G ++Q+  H+ GRV   ++ +     P + +     V   VL +    R           
Sbjct: 1067 GAILQLPGHMSGRVSRIDMFDDYDILPETKFTRNNLVGVCVLSVDVPNRKV--------- 1117

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
                +S+ NS   S  V+   K +  ++DL    I +G+V NV ++G F+ +   L A+V
Sbjct: 1118 ---ALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQGLFVTIGHNLIARV 1174

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSN 1454
             +  L D +++  +  F + +LV G ++ ++  SKR+E++LK S  +    SEI    ++
Sbjct: 1175 KIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQS--KIKDSSEITKTFAD 1232

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
            + VG  + G + +V  YG+ I I+ T N+VGLCH SE+++  V NI  +Y +G+KV+  +
Sbjct: 1233 IAVGSNLDGTVVKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHV 1292

Query: 1514 LKVDKEKRRISLGMKSSYFKN--------DADNLQMSSEEESDEAIEEVGSYNRSSLLEN 1565
            L VD EKRRI+LG+KSSYF +        + ++++M SE++SD +  EVGS +       
Sbjct: 1293 LDVDSEKRRIALGLKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEVGSKD------- 1345

Query: 1566 SSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD--MDNGISQNQGHT--DE 1621
                    D++SE+  +L  A  E            ++E+P     NG     G T  D+
Sbjct: 1346 --------DVQSEEVENLESAGDED-----------EEEEPSALQANGFDWTDGSTVFDK 1386

Query: 1622 AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKY 1681
                 E +     ++ K ++ +  R  +E     + P T  +FER + SSPNSS +WI Y
Sbjct: 1387 LADDTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEIPSTAADFERQLLSSPNSSLLWISY 1446

Query: 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741
            MA+ L++ ++++AR + +RAL TIN REE+EKLN+W+A  NLE  YG   E+++ +VF+ 
Sbjct: 1447 MAYHLNLNELQEAREVGKRALSTINYREEDEKLNVWMALLNLEVAYGT--EDSLKEVFKE 1504

Query: 1742 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EG 1800
            A  YCD   V+  L G+  +  +  LADE +  M+K FK    VW++    LL   + E 
Sbjct: 1505 ACAYCDALIVYEKLCGILIKGGKVDLADEYMQLMLKNFKQVPSVWIQYATFLLNNDKAEK 1564

Query: 1801 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860
               +++R+L SLP+ +H+  I + AILEFKNG  +RGR++FEG+LS YPKR DLW++ +D
Sbjct: 1565 AHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPERGRTIFEGLLSSYPKRLDLWNVLID 1624

Query: 1861 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
             E++  D  ++R LF+R ++L+L  KK KF FKK+L YEK++G++E  E VK++A+EYV 
Sbjct: 1625 MEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKWLAYEKNIGDDEGAEQVKRRAIEYVS 1684

Query: 1921 ST 1922
             +
Sbjct: 1685 ES 1686



 Score =  228 bits (581), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 227/818 (27%), Positives = 373/818 (45%), Gaps = 62/818 (7%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG  SLT  E  E   E   +F     G  + +KK + K +     +  +L +    
Sbjct: 35  FPRGGASSLTPLEYKEAVLEAKKDFMESASGTAELSKKTRPKKKGSKKSSKSELDN---- 90

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADA 166
                L  +   +  KNI+ G  + G +A++N  DL + LP  L G         + +D 
Sbjct: 91  --EENLKVHIQSLRYKNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDR 148

Query: 167 LDPILDNEIEAN-----EDNL-----LPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIWLS 215
           LD I DN  E N     ED L     L  ++ VGQ V   V  L  ++  + GKR I LS
Sbjct: 149 LDSI-DNHAEDNAATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELS 207

Query: 216 LRLSLLYKGLSLETVQ--EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID 273
           L+      G + E      G ++ A V SIEDHG +   G+ ++TGFL + ++  N    
Sbjct: 208 LKPQDA-NGSAPEAADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKKHI--NDFPF 264

Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSI 332
           V+   LL  V+   DR   + +LS     ++   TK L+ + S+  ++PG  ++  V  I
Sbjct: 265 VEGQSLLCSVISKEDR---IFHLS-----LTATSTKALEVMPSVQAILPGDYINVLVTDI 316

Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVG- 388
            E+GV+  ++     T DI+H  +     + ++ +   K V AR+LFV   DP   AV  
Sbjct: 317 KESGVIAKYMGVVDVTSDIYH-SSPVKGEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSF 375

Query: 389 ----LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-IS 443
               LT N +   N   P  + +G I + +KV  V   LG+  D+    +S  A+++ +S
Sbjct: 376 LPHVLTFN-FATPNTPHPDQLDIGFIVNAAKVTYVSSSLGVFCDVGVPEISGFAHISRLS 434

Query: 444 DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
           D     +      YK  S    RI+ + +++ L     + S          D++ G  V 
Sbjct: 435 DKKVAGISPNSGPYKVDSTHEARIINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVD 494

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRI 561
           G +  +   G +V    G+  L P  HM++  +  P ++FKVG+ +  RVL   V  KR+
Sbjct: 495 GTIAKLIPQGIVVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRV 554

Query: 562 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
            +T KK+L+ + L ++  Y +AT    T G + +I + G  V FYN V+ F P SE+   
Sbjct: 555 LLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEA 614

Query: 622 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK---PTRVSEDDLVKLGSLVSGVVD 678
              +    + VGQ +   I+S  P +R++ +    +     R+   + +K GS++SG+V 
Sbjct: 615 YIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVL 674

Query: 679 VVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
             T ++V+V +  K    G I    L D  L   + + + ++   +  ++LVL  ++S  
Sbjct: 675 QKTEDSVIVDLGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKK 732

Query: 738 L--LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
           L  LS K SL+ +A++  +P + + +       G+V N    G FV F   L    P++ 
Sbjct: 733 LISLSLKKSLVEAAKENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKAY 792

Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +      S  Y   QSV    L V     +  +S K
Sbjct: 793 ISEEYVPVPSAVYKPQQSVTCVCLSVELSQEKAFMSFK 830



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 194/911 (21%), Positives = 349/911 (38%), Gaps = 174/911 (19%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            + +++I  G  + G +A++  + +V+ +  G+ GL  +    D  L              
Sbjct: 482  LRIEDIEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTHMADIAL---------QFPER 532

Query: 186  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSL----ETVQEGMVLTAYVK 241
             F VG  V C VL  +     + ++++ L+L+ SLL   L L    E    G      + 
Sbjct: 533  RFKVGSSVKCRVLSTN-----VLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLA 587

Query: 242  SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
             I + G I+ F   S   FLP + ++E    D +           + +T  V  +S DP+
Sbjct: 588  RIFEDGAIVEF-YNSVRAFLPVSEMSEAYIRDAREHF-------KVGQTLSVTIVSCDPE 639

Query: 302  TVSKCV-----TKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
                 V     + D K +   + +  G ++S  V    E+ V++      TG + +  L 
Sbjct: 640  NRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDKVTGVITLGQLC 699

Query: 356  NTFPTTNWKNDYNQHKKVNAR-----------ILFVDPTSRAVGLTLNPYLLH----NRA 400
            +         D N+  KV  +           +L  D + + + L+L   L+     NR 
Sbjct: 700  D--------GDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRM 751

Query: 401  PPSHVKVGDIYDQSK---VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
            P   + + D+ +  K    VR     G+ ++     V   A V  + ++EE V      Y
Sbjct: 752  P---INITDLKEGIKYFGFVRNATTFGVFVEFCDGLV---ALVPKAYISEEYVPVPSAVY 805

Query: 458  KEGSCVRVRIL--------GFRHLEGLATGILKASAF------------EGLVFTHSDVK 497
            K    V    L         F   + LA    KA  F            E +  T+ D  
Sbjct: 806  KPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPVDETIKKTY-DYV 864

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF--EIV---KPGKKFKVGAELVFR 552
             G +    V +  +    V     V     +  + +   EIV   KP K+F  G ++  R
Sbjct: 865  AGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPNKPLKRFHKGDKIRVR 924

Query: 553  VLGVKSKR----ITVTHK-------KTLVKSKLAILSSYAEATDRLI----THGWITKIE 597
            VLG+   R    + ++H+       +  V+  +  +  ++    +        G++  + 
Sbjct: 925  VLGIHDSRNHKFLPISHRVSPKQFLELSVRPSILNMEPFSMKEPQFKKGDEVTGFVNNVS 984

Query: 598  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSF 654
            K   +V     V G  P  +L  D   E +S+   + +G+ +KC +++   A   I LS 
Sbjct: 985  KECVWVSLTPSVNGRIPILDLTTDVK-ELNSLQKHFFLGKAIKCYVVN---AEDSITLS- 1039

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
             + P +  E +L     LV  V +V    A++      G+  G +    + D  +     
Sbjct: 1040 AIGPLQGFE-NLTPGSRLVGKVTNVNEAGAILQL---PGHMSGRVSRIDMFDDYD----- 1090

Query: 715  KSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV--- 764
               I P  +F +       +L +D  +  + LSA+ S     Q  P +      NSV   
Sbjct: 1091 ---ILPETKFTRNNLVGVCVLSVDVPNRKVALSARNS---RTQSQPVEIKDKEINSVDDL 1144

Query: 765  -----VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
                   G+VCN+   G FV     L       +  D    D    ++V Q V+ +I+ +
Sbjct: 1145 KIGDICRGFVCNVANQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGI 1204

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
            ++++ RI +SLKQS     D+S + + F                          +GS ++
Sbjct: 1205 DNDSKRIEMSLKQS--KIKDSSEITKTF----------------------ADIAVGSNLD 1240

Query: 880  GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAER 932
            G V +  D+GV++  +   ++ G     ++A A V        SG  ++A +LDV   +R
Sbjct: 1241 GTVVKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKR 1300

Query: 933  LVDLSLKTVFI 943
             + L LK+ + 
Sbjct: 1301 RIALGLKSSYF 1311



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 184/846 (21%), Positives = 321/846 (37%), Gaps = 145/846 (17%)

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP----------RSKAVDG---------- 797
            +I P S++ G +  I      V     LTG+ P          R  ++D           
Sbjct: 105  NITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNAATEE 164

Query: 798  -----QRADLSKTYYVGQSVRSNILDVNSE----TGR--ITLSLKQSCCSSTDASFMQEH 846
                 Q  DL   Y VGQ VR ++  + SE    TG+  I LSLK       DA      
Sbjct: 165  EDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQ-----DA------ 213

Query: 847  FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY-GFIT 905
                           NGS  +  + F+ GS+I+  V    D G+V  F+   + Y GF++
Sbjct: 214  ---------------NGSAPEAAD-FVAGSMIQAVVSSIEDHGIV--FDIGINNYTGFLS 255

Query: 906  HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 965
               +       G  +  ++  ++K +R+  LSL                         ++
Sbjct: 256  KKHINDFPFVEGQSLLCSV--ISKEDRIFHLSLTAT----------------------ST 291

Query: 966  KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF---PQK------QFL 1016
            K L V  +V AI+     N LV  + E      Y  V D  +  +   P K      +F 
Sbjct: 292  KALEVMPSVQAILPGDYINVLVTDIKESGVIAKYMGVVDVTSDIYHSSPVKGEDLEDKFQ 351

Query: 1017 NGQSVIATVM-ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 1075
              +SV A V+  +P       +  L   +  T   ++         D+G +V A      
Sbjct: 352  LAKSVPARVLFVIPGDPPKIAVSFLPHVL--TFNFATPNTPHPDQLDIGFIVNAAKVTYV 409

Query: 1076 PLELRLKFGIG---FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK 1132
               L +   +G     G  HI+ ++D K   +      +K+  T  ARII  S   +   
Sbjct: 410  SSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPNSGPYKVDSTHEARIINYSYVDN--- 466

Query: 1133 SFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
              L+ LS + S+L       + L  E D+ +GQ V G + K+  +  ++TIS  +     
Sbjct: 467  --LYILSFQQSVLN-----QQFLRIE-DIEVGQFVDGTIAKLIPQGIVVTISEGING--L 516

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
            +  +      LQ  +RRF +G +V   VLS N  +K + L L+     + +  + +  D 
Sbjct: 517  VPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLK---KSLLNTDLPLIYDY 573

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
             Q     G    G +++I     G +V+    +   +  +E+    + D    +  GQ +
Sbjct: 574  EQA--TPGTQTVGTLARIFE--DGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTL 629

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
               ++      R    + +  R              S D     K LE+ E++    ++ 
Sbjct: 630  SVTIVSCDPENR---KMRVGCREQ------------SWD----AKRLERFENIKAGSVLS 670

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF----PIGKLVAGRVLSVEPL 1428
            G V   T     + L  K+   + L  L DG +    K         KL    VL  +  
Sbjct: 671  GIVLQKTEDSVIVDLGDKVTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTS 730

Query: 1429 SKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             K + ++LK S    A ++ +  N+++L  G    G ++   ++G+F+   +  LV L  
Sbjct: 731  KKLISLSLKKSLVEAAKENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCD-GLVALVP 789

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1547
             + +SE++V     +Y+  + V    L V+  + +  +  K    K +     M S+ + 
Sbjct: 790  KAYISEEYVPVPSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDI 849

Query: 1548 DEAIEE 1553
            D  ++E
Sbjct: 850  DNPVDE 855


>gi|295667623|ref|XP_002794361.1| rRNA biogenesis protein RRP5 [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226286467|gb|EEH42033.1| rRNA biogenesis protein RRP5 [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 1815

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 418/1481 (28%), Positives = 710/1481 (47%), Gaps = 191/1481 (12%)

Query: 542  KFKVGAELVFRVL----GVKSKRITVTHKKTLVKSKLAILSSYAEATD-----RLITHGW 592
            K+ VGA++  R++     V+  ++  +  + +VK    +L  Y+ + D      ++    
Sbjct: 417  KYHVGAKIKGRLICTFPTVEPLKLGFSILEHVVKFSPTVLDQYSTSEDIPAVSAIVPEAK 476

Query: 593  ITKIEKH-GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            +TK+E   G +V+F N + GF   S L    +D        Y V    + RI+       
Sbjct: 477  VTKVEPGLGVYVQFNNKLYGFVHISRLSDDKVDSISATKGPYKVDSTHEARIVGFSALDN 536

Query: 649  RINLSFMMK----PTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIP 700
               LSF  K    P    ED  V +G++V G ++  +  P+ +  ++  +A G S G +P
Sbjct: 537  LYLLSFERKVIDQPFLRLED--VAVGAVVKGKIEKLLTGPDGIDGLIVSLADGIS-GLVP 593

Query: 701  TEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
              HL+D  L+H    +   + G +   ++L ++ E   L L+ K SL+NS      +   
Sbjct: 594  RMHLSDTKLQHP---ERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYGD 650

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
            I P +   G + +I   G  V+F G + GF P S+  +    D S+ + VGQ V  + L 
Sbjct: 651  ILPGNQSPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALT 710

Query: 819  VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
            V++E  ++ +S K     ST     +  F                      E    G ++
Sbjct: 711  VHAELRKLVVSCKDP---STSTETYKNAF----------------------ENIQPGDLV 745

Query: 879  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 938
               V E +   +++  E    V      H   G + ++GS + A I    K   LV LS+
Sbjct: 746  SCTVFEKSKEDILLRLEGSGLVARLNAEHVTDGQSSKNGSAL-ACIRVGQKLHDLVILSM 804

Query: 939  KTVF-IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHS 996
            + V  + +     S +QA+++       +DL     V   V+ I+ +   V  L      
Sbjct: 805  QKVHRLIKVSNKPSLKQARQRGELPAKFEDLQEGLKVTGFVKNIIADGLFVEFLRGLTGF 864

Query: 997  IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 1056
            +    + D +  K P   +   Q++ + V ++       R +L LK    ++   S  A+
Sbjct: 865  LPKRLMDDDHVAK-PNFGYTLSQTISSFVHSIEDDRQ--RFILSLKENQTSKQHVSDNAR 921

Query: 1057 KKS---------------SYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
              S               S+D    G + +A+I  +K  ++ ++      GRI ++E+ D
Sbjct: 922  PASNANQSSINPVDGDIKSFDDLTFGRITKAKIVSVKETQINVQLADNIQGRIDVSEIFD 981

Query: 1099 DKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTV 1147
            +   + +       FK  Q +  RI+    A+S+K  P   +S    ++ELS KPS L  
Sbjct: 982  EWDAIKDRKQPLRYFKPKQIIPVRIVGIHDARSHKFLPISHRSGKYPVYELSAKPSSLES 1041

Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1207
            ++I    L     V IG    G++  + ++   + IS +++ +L I D + + S + +  
Sbjct: 1042 NDIE---LLSLDKVEIGSSWLGFINNIGDDCLWVNISPNVRGRLRITDVSDDLSLVGDVT 1098

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            + F +G A+  HV  +N +K  L L         S K  D  N    +   +G+I+ GR+
Sbjct: 1099 KNFPVGSAIKVHVTGVNVDKNRLDL---------SAKHGDPPNKRTISDFSKGEILLGRV 1149

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            +K+      ++VQ+     G ++  ++     +D  +      F K +VL +        
Sbjct: 1150 TKVSER--QVLVQLSDTTVGAINLIDM-----ADDYTKVIPANFHKNEVLRVC-----IL 1197

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
             V++  +  L  +S   S  LS+ +      ++ I  L  N IV+G+V+ V + G F+ L
Sbjct: 1198 DVDVPNKKIL--LSVRPSRVLSSSLPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVTL 1255

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++ A V +S+LSD Y++  + EF + +LV GR++ V+  + +++++LK S      ++
Sbjct: 1256 GHEVTAYVRISDLSDSYLKEWQPEFQVDQLVRGRIIFVDAEANKLQMSLKESVLEPNYKA 1315

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAG 1506
             I  + +L+ G IV G+++ VE +G FI I+ T NL GLCH +E++E  V++   ++  G
Sbjct: 1316 PIT-IRDLNRGQIVTGRVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQKVEDARKLFEKG 1374

Query: 1507 EKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENS 1566
            + VK KI+K+D +K RISLG+K+SYFK         S+++SD               ENS
Sbjct: 1375 DIVKAKIVKIDHDKERISLGLKASYFK--------ESDDKSDG--------------ENS 1412

Query: 1567 SVAVQDMDMESEDGGSLVLAQIESRASVPPL----------EVNLDDEQPDM----DNGI 1612
                +  D ESED G + L ++ES   V             E N+ DE   M    D G+
Sbjct: 1413 EYGNEQSDSESEDDGEIEL-ELESDDDVSMGGVDLGGGDGSESNVSDEDVQMAGTEDTGV 1471

Query: 1613 S----------QNQGHT--DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRT 1660
            +             G T  DEA      ++  A  K+K+ R+ EI+      L+   P++
Sbjct: 1472 TGGLVTSGFDWNGSGTTVVDEANDSCSSSDGQAVPKKKKRRKPEIQVDRTGDLDAHGPQS 1531

Query: 1661 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY 1720
              ++ERL+   P+SS +W+KYMAF L +++V+KAR IAERAL++I I ++ EK NIW+A 
Sbjct: 1532 IADYERLLLGEPDSSLLWLKYMAFQLELSEVDKAREIAERALRSIRIGQDAEKFNIWIAM 1591

Query: 1721 FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKF 1779
             NLEN +GN  ++++  VF+RA QY DP+++H  +  +Y ++ +N+ ADEL    + KKF
Sbjct: 1592 LNLENIFGN--DDSLEDVFKRACQYNDPQEIHERMTSIYIQSGKNEKADELFQTTLKKKF 1649

Query: 1780 KHSCKVWLRRVQRL---LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVA 1834
              S  +++     L   L   Q G +A++ RA+ SLP H H+   S+   LEF+  NG  
Sbjct: 1650 TQSPNIYINYATFLFDTLSDPQRG-RALLPRAIQSLPAHTHVDITSKFGQLEFRSPNGDI 1708

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS------------ 1882
            +RGR++FE +LS +PKR DLW++ LD EIR GD + +R LFER + L             
Sbjct: 1709 ERGRTVFEALLSSFPKRVDLWNVLLDLEIRNGDAEQVRRLFERVLGLGHGIAADGTETGP 1768

Query: 1883 --LPPKKMKFLFKKYLEYEKSV--GEEERIEYVKQKAMEYV 1919
              L  K+ KF FKK+L +E+ V  G E+ ++ VK +A  YV
Sbjct: 1769 KKLKDKQAKFFFKKWLAFEEKVGGGNEKMVDEVKARAAAYV 1809



 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 220/861 (25%), Positives = 367/861 (42%), Gaps = 80/861 (9%)

Query: 52  PVFPRGGGHSLTQRERD--EIHAEVDAEFE----AVER--------GLHKKNKKKKKKTE 97
           PVFPRGGG+ LT  ER   +I A  D  FE    A E+        G HKK+ K      
Sbjct: 66  PVFPRGGGNILTPLERKQIQIQATRDVLFEQNGAAGEQDDNMDEADGGHKKSGKASGVKF 125

Query: 98  RKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL 157
           +K         +        K       +  K I  G K+ G V+ +N  D+ + LP  L
Sbjct: 126 KKVKSKAKKQAASED---PTKQAVRIEGLNFKRIVIGSKVLGQVSSINAHDIGLSLPNNL 182

Query: 158 RG---LARAADALDPILDNEIEANEDNL---------------LPTIFHVGQLVSCIVLQ 199
            G   L   +      ++  + +NED                 L + F +GQ +   V  
Sbjct: 183 TGYVPLTSISKTFQQKIEKLLNSNEDENEGSDDGGSDDEEDLDLKSYFKLGQYLRASVTA 242

Query: 200 LDDDKKEI---GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
            + + K     GK+ I LS+       GLS   +     + A V S+EDHG ++  GL  
Sbjct: 243 TESETKNPQTKGKKHIQLSVDPRDANSGLSKSDMVVNTTVQASVVSVEDHGLVMDLGLDD 302

Query: 257 --FTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSD-PDTVSKCVTKDLK 312
               GF+    +  +  +  +K G +   VV   +    VV LS++ P   S   +  L 
Sbjct: 303 GQTKGFMSSKEIPPDLEVSQIKEGSVFLCVVTGHNANGSVVKLSANLPAAGSIKKSHYLT 362

Query: 313 GI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 371
              +I+  +PG      +  +   G+    +      VD+    +T  T +    Y+   
Sbjct: 363 SAPTINSFLPGTAAEILLNEVTSTGMAGKIMGMLDAVVDLVQSGSTTGTEDLTTKYHVGA 422

Query: 372 KVNARILFVDPTSRAVGL---------TLNPYLLHNRAPPSHV-KVGDIYDQSKVVRVDR 421
           K+  R++   PT   + L           +P +L   +    +  V  I  ++KV +V+ 
Sbjct: 423 KIKGRLICTFPTVEPLKLGFSILEHVVKFSPTVLDQYSTSEDIPAVSAIVPEAKVTKVEP 482

Query: 422 GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLAT 478
           GLG+ +   +       +V IS +++++V  +   +  YK  S    RI+GF  L+ L  
Sbjct: 483 GLGVYVQFNN---KLYGFVHISRLSDDKVDSISATKGPYKVDSTHEARIVGFSALDNLYL 539

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSE 533
              +    +       DV  G VVKGK+       D   G IV    G+  L P  H+S+
Sbjct: 540 LSFERKVIDQPFLRLEDVAVGAVVKGKIEKLLTGPDGIDGLIVSLADGISGLVPRMHLSD 599

Query: 534 FEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 591
            ++  P +KF+ GA++  R+L V  + +++ +T KK+L+ S+      Y +      + G
Sbjct: 600 TKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYGDILPGNQSPG 659

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            I  I  HG  V+FY  V+GF P SE+      +PS  + VGQVV    ++     R++ 
Sbjct: 660 TIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAELRKLV 719

Query: 652 LSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
           +S    P+  +E      + ++ G LVS  V   +   +++ +   G     +  EH+ D
Sbjct: 720 VS-CKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEDILLRLEGSGLV-ARLNAEHVTD 777

Query: 707 --HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDASHIH 760
               ++ + + + I+ G +   L++L  +  + L+  S K SL  + Q  +LP+    + 
Sbjct: 778 GQSSKNGSAL-ACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKFEDLQ 836

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
               V G+V NII  G FV FL  LTGF P+    D   A  +  Y + Q++ S +  + 
Sbjct: 837 EGLKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPNFGYTLSQTISSFVHSIE 896

Query: 821 SETGRITLSLKQSCCSSTDAS 841
            +  R  LSLK++  S    S
Sbjct: 897 DDRQRFILSLKENQTSKQHVS 917


>gi|119482079|ref|XP_001261068.1| rRNA biogenesis protein RRP5, putative [Neosartorya fischeri NRRL
            181]
 gi|119409222|gb|EAW19171.1| rRNA biogenesis protein RRP5, putative [Neosartorya fischeri NRRL
            181]
          Length = 1819

 Score =  438 bits (1126), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 376/1339 (28%), Positives = 657/1339 (49%), Gaps = 161/1339 (12%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGAVVKGKIEKLLIGPAGVDGLIVTLADGIT-GLVPSMHFADTALQFPEKK--FREGL 610

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
                ++L ++ +   + L+ K SL+NS   +  D   I P S   G + NI   G  V+F
Sbjct: 611  TITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQF 670

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVSCKDP------ST 724

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII-GSVIEGKVHES----NDFGVVVSFEE 896
            F + +    EKI                 G ++ G+V E  V +     ++FG++   + 
Sbjct: 725  FTETYKKAFEKIQ---------------PGLLVTGTVFEKSVDDVLLKLDEFGLIARLDL 769

Query: 897  HSDVYGFITHHQLAGATVESGSVIQ-AAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
               V G  +    A + +  G  +    +LD+ +A RL+ +S +           S ++A
Sbjct: 770  AHVVDGSESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKA 819

Query: 956  QKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 1014
             K+       +D+     V   V  I  +   +  L      +    ++D N  K P   
Sbjct: 820  AKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEFLGGITGLVPKRLLADENASK-PDYG 878

Query: 1015 FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK---------------- 1058
             +  Q V ATV ++ +     R +L +K  SE  ++  KR   K                
Sbjct: 879  MVKSQLVTATVHSIDTDFQ--RFILSMKP-SEATSAGPKRPAPKPTLSNDVVSNAVDESI 935

Query: 1059 ---SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKI 1113
               S +  G  V+ ++  +K  ++ ++      GRI ++EV D   ++ +       F+ 
Sbjct: 936  ESMSDFTFGRTVKCKVVSVKATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFRP 995

Query: 1114 GQTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
             Q ++ARI+    A+S+K  P   +S    ++ELS+KPS L  +   S L  E+  V IG
Sbjct: 996  KQIISARILGIHDARSHKFLPISHRSGKLPVFELSVKPSFLQAAN-PSPLNLEQ--VQIG 1052

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
                G++  V ++   + +S +++ +L  +D++ + S   + ++ F IG A+  HV +++
Sbjct: 1053 STWVGFINNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAAVD 1112

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             EK  L L  +     +S + + +           G I+ GR++K+      +++Q+   
Sbjct: 1113 TEKGRLDLTAKQGSSKLSFEDISV-----------GMILPGRVTKVTEK--QVIMQLSDT 1159

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1344
            + G V+  +L +       + Y +   ++  V+ + +  +    + LSLR S        
Sbjct: 1160 VVGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANK---KISLSLRPS-------- 1208

Query: 1345 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1404
               LS+ +      +  ++ L  N +V+G+VK V   G F+ L   + A V +S+LSD Y
Sbjct: 1209 -KVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDSY 1267

Query: 1405 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ 1464
            ++  +  F + +LV GRV  V+P   R++++LK S      ++ I  + +L VG +V G+
Sbjct: 1268 LKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPIT-MHDLKVGQVVTGK 1326

Query: 1465 IKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
            +++VE +G FI I+ + N+ GLCH SE+++  VD+  T+Y  G+ VK KI+KVD+E  +I
Sbjct: 1327 VRKVEEFGAFIVIDRSANVSGLCHRSEMADKRVDDARTLYEEGDVVKAKIIKVDRESGKI 1386

Query: 1524 SLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESED---- 1579
            S  +K+S+FK+         +EE +   +E G  N  SL     V V+  D    D    
Sbjct: 1387 SFSLKASHFKD--------HDEEDESGSDEDGDSNGVSLDGMGGVDVEGSDDSENDDDDV 1438

Query: 1580 --GGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN--------QGHTDEAKTIDEKN 1629
              GG  +    ES       +V +       D G+           +   DEA   D  +
Sbjct: 1439 SMGGVDLEEDSESDGEESDEDVEMTSAPVKRDGGLGATGFDWSGNVKDDEDEAMQSDSDD 1498

Query: 1630 NRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1689
              +++KK+K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W+KYMAF L + 
Sbjct: 1499 EDNSRKKKKKSRKPEIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLKYMAFQLELG 1558

Query: 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1749
            +VEKA+ IAERAL+TI+I ++ EKLNIWVA  NLEN YGN  ++++ +VF+RA QY D +
Sbjct: 1559 EVEKAKEIAERALRTISIGQDTEKLNIWVALLNLENTYGN--DDSLDEVFKRACQYNDTQ 1616

Query: 1750 KVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQ 1806
            +++  +  +Y ++ +N  ADEL    + KK  ++ K +L     L       +  +A++ 
Sbjct: 1617 EIYDRMTSIYIQSGKNDKADELFQTALKKKISNTPKFFLNYASFLFDSMAAPDRARALLP 1676

Query: 1807 RALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1864
            RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI+
Sbjct: 1677 RALQSLPSHTHVELTSKFGQLEFRSPNGDVERGRTVFEGLLSSFPKRVDLWNVLLDLEIK 1736

Query: 1865 LGDVDLIRGLFERAISL-----------------SLPPKKMKFLFKKYLEYEKSV----- 1902
             GD + +R LFER + +                  L PK+ KF FKK+L +E+ +     
Sbjct: 1737 NGDAEQVRRLFERVLGIRDAKKGAAAAAPMDASKKLRPKQAKFFFKKWLSFEEKLAAANG 1796

Query: 1903 GEEERIEYVKQKAMEYVES 1921
            G+E+ +E +K KA +YV+S
Sbjct: 1797 GDEKMVEEIKAKAADYVKS 1815



 Score =  190 bits (483), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 221/909 (24%), Positives = 386/909 (42%), Gaps = 84/909 (9%)

Query: 3   ASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSL 62
           A +R+ QK+    G +     K+Q K    +    ++  +L +  DD+ P FPRGGG  L
Sbjct: 14  AVTRQPQKRVRVGGAE---QGKDQKKQRTSESTSDLKPTELTVLHDDE-PSFPRGGGSVL 69

Query: 63  TQRERDEIHAEVDAEFEAVERGLHKK--------NKKKKKKTERKANETVDDLGSLFGDG 114
           T  E+ +IH +   +    ++G  K         + +  +  + + N T           
Sbjct: 70  TPLEKKQIHIQATKDVLFEQKGSKKSSDNFAVGDDDEDIEMNDAEDNATSTKQSRKRKTK 129

Query: 115 ISGKLPRYANK--------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
              +  + AN+        +  K I  G  + G V+ +N  D+ + LP  L G      A
Sbjct: 130 SKKRAEQEANEKQGVRIEGLNFKRIVPGSMVLGQVSSINAHDIGLSLPNNLTGYVPLT-A 188

Query: 167 LDPILDNEIEAN-EDNLLPTI-----------------FHVGQLVSCIVLQLDD---DKK 205
           +   L+ +IE    DN                      F++GQ +   V+ +     D  
Sbjct: 189 VSKKLEEKIEKILNDNDNEDSDAEEEDDDEDSLDLTDYFYLGQYLRASVVSVGSNAADAP 248

Query: 206 EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPR 263
              K++I LS+       GLS   ++    + A V S+EDHG ++  G+      GF+ +
Sbjct: 249 SKNKKRIELSVDPRQTNAGLSKSDLEVNTAIQASVVSVEDHGLVMDLGIEGADVKGFMSK 308

Query: 264 NNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLV 320
             +   +    +K G +   +V   +    VV LS++  +              +I+  +
Sbjct: 309 KEIDPKTDYSSIKEGSVFLCMVTGQNANGSVVKLSANLQSAGSIKKSHYLSTASTINSFL 368

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG      +  +  +G++   +     TVD+          +    +    K+  RI+  
Sbjct: 369 PGTAAEILLTEVSSSGLIGKIMGMLDATVDLVQSGGNSGKDDLTKKFQLGAKIKGRIVCT 428

Query: 381 DPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            P S    VG ++  ++L        P +      +  I  ++KVV VD G+G+ + + S
Sbjct: 429 FPASEPFKVGFSILDHVLKFATEGHGPGTSEDAPAISAIIPEAKVVMVDPGMGVYVQMGS 488

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           T      +V +S +A+ +V  +  +   ++  S    R++G+   +GL     +    E 
Sbjct: 489 T--KHMGFVHVSRLADGKVEHIAPEHGPFRIDSVHEARVVGYSSFDGLYLLSFERKVIEQ 546

Query: 489 LVFTHSDVKPGMVVKGKV-------IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
                 DV  G VVKGK+         VD  G IV    G+  L P  H ++  +  P K
Sbjct: 547 PFLRLEDVTVGAVVKGKIEKLLIGPAGVD--GLIVTLADGITGLVPSMHFADTALQFPEK 604

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           KF+ G  +  R+L V  + ++I +T KK+L+ S+ AI   Y +      + G I  I+ H
Sbjct: 605 KFREGLTITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPH 664

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
           G  V+FY  V+GF P SE+      +PS  +  GQVV    +S  PA  ++ +S    P+
Sbjct: 665 GAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVS-CKDPS 723

Query: 660 RVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
             +E      + ++ G LV+G V   + + V++ +   G     +   H+ D  E   + 
Sbjct: 724 TFTETYKKAFEKIQPGLLVTGTVFEKSVDDVLLKLDEFGLI-ARLDLAHVVDGSESKQIS 782

Query: 715 K-SVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
             S I+ G + + LLVLD + +  L+  SA+ SL  +A+Q  LP+    I   + V G+V
Sbjct: 783 ALSKIRVGQKLNDLLVLDIQRARRLIKVSARASLKKAAKQGSLPAKFEDIQEGAEVTGFV 842

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            NI   G F+ FLG +TG  P+    D   +         Q V + +  ++++  R  LS
Sbjct: 843 RNITSDGLFIEFLGGITGLVPKRLLADENASKPDYGMVKSQLVTATVHSIDTDFQRFILS 902

Query: 830 LKQSCCSST 838
           +K S  +S 
Sbjct: 903 MKPSEATSA 911



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 143/315 (45%), Gaps = 39/315 (12%)

Query: 541  KKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            K F +G+ L   V  V ++  R+ +T K+    SKL    S+ + +  +I  G +TK+ +
Sbjct: 1096 KHFPIGSALKVHVAAVDTEKGRLDLTAKQG--SSKL----SFEDISVGMILPGRVTKVTE 1149

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
                ++  + V G     +L  D      ++YH   V++  ++    A+++I+LS  ++P
Sbjct: 1150 KQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANKKISLS--LRP 1207

Query: 659  TRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLA 705
            ++V    L            +K+  +V G V  V  + + V +   G+     +    L+
Sbjct: 1208 SKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTL---GHDVTAYVRVSDLS 1264

Query: 706  DHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
            D     + +K   K  ++ DQL+     V+D E   L +S K S+++   + P     + 
Sbjct: 1265 D-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLK 1318

Query: 761  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
               VV G V  + E G F+       ++G   RS+  D +  D    Y  G  V++ I+ 
Sbjct: 1319 VGQVVTGKVRKVEEFGAFIVIDRSANVSGLCHRSEMADKRVDDARTLYEEGDVVKAKIIK 1378

Query: 819  VNSETGRITLSLKQS 833
            V+ E+G+I+ SLK S
Sbjct: 1379 VDRESGKISFSLKAS 1393



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 105/490 (21%), Positives = 201/490 (41%), Gaps = 80/490 (16%)

Query: 1068 QAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125
            +A++  + P + + ++ G   H G +H++ + D K   +      F+I     AR++  S
Sbjct: 470  EAKVVMVDPGMGVYVQMGSTKHMGFVHVSRLADGKVEHIAPEHGPFRIDSVHEARVVGYS 529

Query: 1126 NKPDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV-----DNEW 1178
                   SF  L+ LS +  ++       +      DV++G  V G + K+       + 
Sbjct: 530  -------SFDGLYLLSFERKVI------EQPFLRLEDVTVGAVVKGKIEKLLIGPAGVDG 576

Query: 1179 ALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
             ++T++  +     +    +  + LQ  +++F  G  +T  +LS+N +K+ +RL L+   
Sbjct: 577  LIVTLADGITG--LVPSMHFADTALQFPEKKFREGLTITARILSVNLQKRQIRLTLKK-- 632

Query: 1239 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-----LYGRVH--- 1290
                     + N     +    DIV G  S       G +V I PH      YG V    
Sbjct: 633  --------SLLNSESAIWKDYQDIVPGSQSP------GTIVNIQPHGAVVQFYGSVRGFL 678

Query: 1291 -FTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
              +E+    + DP   + +GQ V    L +   +               G  + +  D S
Sbjct: 679  PVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPAL---------------GKLAVSCKDPS 723

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESP 1408
            T  +T  K  EKI+   P ++V G V   +     + L    L A++ L+++ DG   S 
Sbjct: 724  TFTETYKKAFEKIQ---PGLLVTGTVFEKSVDDVLLKLDEFGLIARLDLAHVVDG---SE 777

Query: 1409 EKEF-PIGKLVAGR------VLSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDI 1460
             K+   + K+  G+      VL ++   + ++V+ + S  + A Q  +     ++  G  
Sbjct: 778  SKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARASLKKAAKQGSLPAKFEDIQEGAE 837

Query: 1461 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1520
            V G ++ + S GLFI      + GL     L++++    +      + V   +  +D + 
Sbjct: 838  VTGFVRNITSDGLFIEFLG-GITGLVPKRLLADENASKPDYGMVKSQLVTATVHSIDTDF 896

Query: 1521 RRISLGMKSS 1530
            +R  L MK S
Sbjct: 897  QRFILSMKPS 906



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 170/386 (44%), Gaps = 59/386 (15%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 992  FFRPKQIISARILGIHDARSHKFLPISHRSGKLPVFELSVKPSFLQAANPSPLNLEQVQI 1051

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     ++ ++ D    ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1052 GSTWVGFINNVADDCLWINLS-PNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAA 1110

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + L++   + SK   +D   IS+ +++PG     RV  + E  V++       
Sbjct: 1111 VDTEKGRLDLTAKQGS-SKLSFED---ISVGMILPG-----RVTKVTEKQVIMQLSDTVV 1161

Query: 347  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
            G V++  L + +    PT   KND      + A ++ VD  ++ + L+L P  + + + P
Sbjct: 1162 GAVNLIDLADDYSKANPTVYHKNDV-----LRACVVGVDKANKKISLSLRPSKVLSSSLP 1216

Query: 403  ---------SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
                       +KV D+  +  V RV D GL + L    T     AYV +SD+++  +++
Sbjct: 1217 VQDPEITSMKQLKVNDVV-RGFVKRVADSGLFVTLGHDVT-----AYVRVSDLSDSYLKE 1270

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAV 509
             +  ++    V+ R+      +G     LK S  +       T  D+K G VV GKV  V
Sbjct: 1271 WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQVVTGKVRKV 1330

Query: 510  DSFGA--IVQFPGGVKALCPLPHMSE 533
            + FGA  ++     V  LC    M++
Sbjct: 1331 EEFGAFIVIDRSANVSGLCHRSEMAD 1356



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 167/401 (41%), Gaps = 54/401 (13%)

Query: 116  SGKLPRY-------------ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLAR 162
            SGKLP +              + + L+ +  G    G +  V +  L I L   +RG  R
Sbjct: 1021 SGKLPVFELSVKPSFLQAANPSPLNLEQVQIGSTWVGFINNVADDCLWINLSPNVRGRLR 1080

Query: 163  AADALDPI-LDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
              DA D + L  ++E +        F +G  +   V  +D +K            RL L 
Sbjct: 1081 FMDASDDLSLFADVEKH--------FPIGSALKVHVAAVDTEKG-----------RLDLT 1121

Query: 222  YK----GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 277
             K     LS E +  GM+L   V  + +   I+     +  G +   +LA++      P 
Sbjct: 1122 AKQGSSKLSFEDISVGMILPGRVTKVTEKQVIMQLS-DTVVGAVNLIDLADDYS-KANPT 1179

Query: 278  L-----LLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQ 330
            +     +L+  V  +D+  K + LS  P  V  S    +D +  S+  L    +V   V+
Sbjct: 1180 VYHKNDVLRACVVGVDKANKKISLSLRPSKVLSSSLPVQDPEITSMKQLKVNDVVRGFVK 1239

Query: 331  SILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLT 390
             + ++G+ ++     T  V +  L +++    WK+ +   + V  R+  VDP    + ++
Sbjct: 1240 RVADSGLFVTLGHDVTAYVRVSDLSDSY-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQMS 1298

Query: 391  LNPYLL--HNRAPPS--HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA 446
            L   +L    +AP +   +KVG +    KV +V+     ++   S  VS   +   S++A
Sbjct: 1299 LKESVLDPEYKAPITMHDLKVGQVV-TGKVRKVEEFGAFIVIDRSANVSGLCHR--SEMA 1355

Query: 447  EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
            ++ V      Y+EG  V+ +I+      G  +  LKAS F+
Sbjct: 1356 DKRVDDARTLYEEGDVVKAKIIKVDRESGKISFSLKASHFK 1396


>gi|258573391|ref|XP_002540877.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901143|gb|EEP75544.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1819

 Score =  434 bits (1117), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 381/1334 (28%), Positives = 661/1334 (49%), Gaps = 160/1334 (11%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
            V +G++V G ++  ++ P+ +  ++  +A G S G IP  H+AD  L+H    +   + G
Sbjct: 564  VTVGAIVKGKIEKLLIGPDGINGLIVSLADGIS-GLIPGMHMADTKLQHP---EKKFREG 619

Query: 722  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             E   ++L ++ E   L L+ K SL++S   +  D   I P +   G + +I   G  V+
Sbjct: 620  LEVTARILSVNLEKRQLRLTLKKSLLHSESTIWKDYKDISPGNQSPGTLVSIQNNGAVVQ 679

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F G + GF P S+  +    D S+ + VGQ V  N+L V+SE GR+ +    SC    D 
Sbjct: 680  FYGAVRGFLPVSEMSEAYIKDPSQHFTVGQVVSVNVLSVDSEKGRLVV----SC---KDP 732

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            S + E +               G+    +E    G ++ G V E +   +++  E+   +
Sbjct: 733  STVTEAY--------------RGA----LESVRPGQLVSGVVFEKSSDDLLLKLEDGG-L 773

Query: 901  YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
               ++  QL+ ++    +   A I   AKA               F   ++        +
Sbjct: 774  IARLSAEQLSDSSPSKAASNFARIRVGAKASW------------PFNTQHTESSPPNPGK 821

Query: 961  KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQS 1020
                 ++L ++ +V  +V+ +  + + +   E         + D          F+  Q+
Sbjct: 822  LPAKFEELQLNSSVTGLVKNITADGIFVEFLEGLTGFLPKRLVDDEHSNRTDFGFMRSQT 881

Query: 1021 VIATVMALPSSSTAGRLLLLLKAIS-ETETSSSKRAKKKS--------------SYD--- 1062
            +  +V ++   +   R +L +K +  + E  S ++   +S              S+D   
Sbjct: 882  ISCSVSSIEQDTQ--RFILTMKPVEIKDEGKSHRQGTTRSAGLSVANPVDEDIKSFDDLE 939

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTAR 1120
             G   +A+IT +K  +L +       GRI ++E+ D+  ++ +       FK  Q V  +
Sbjct: 940  FGKCTKAKITSVKDTQLNVLLADNVQGRIDVSEIFDNWEDIKDRKQPLRPFKAKQIVPVK 999

Query: 1121 IIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
            ++   +    K         K+ ++ELS KPS L   E    L  E+  V +G  + G++
Sbjct: 1000 VLGIHDARTHKFLPISHRSGKTPMFELSTKPSTLASPEY-EPLTIEK--VKVGSSLLGFI 1056

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
                ++   L IS +++ +L I+D + + +   + ++ F IG A+   V +++ +K  L 
Sbjct: 1057 NNFGDDCLWLNISPNVRGKLRIMDISDDLALAGDIKKTFPIGSALKVTVTAVDVDKNRLD 1116

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
            L  R    G S KT+ IS+      + +G I+ G+++K+       +VQ+   L G +  
Sbjct: 1117 LTAR---HGESSKTLTISD------LSKGMILLGKVTKVTERQA--LVQLNDSLVGAIGL 1165

Query: 1292 TELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1351
                 I ++D  S  +  +F K +VL +         V++ + +    +S   S  LS+ 
Sbjct: 1166 -----IDMADDYSKINPAKFHKNEVLRVCV-------VDVDVPNKKVSLSVRPSKVLSSS 1213

Query: 1352 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1411
            +      +  ++ L    IV+G+V+ V   G F+ML   + A V +S+LSD Y++  + E
Sbjct: 1214 LPVEDPEITSVDKLKVGDIVRGFVRKVADVGLFVMLGHNVTAYVRVSDLSDAYLKEWQDE 1273

Query: 1412 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1471
            F + ++V GR+  V+  + +V++TLK S      +  +  LS+L  G IV G++++VE +
Sbjct: 1274 FQVDQIVRGRITLVDTEAGKVQMTLKQSALDPNYKPPLQ-LSDLKQGQIVTGKVRKVEEF 1332

Query: 1472 GLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            G F+TI+ T NL GLCH SE++E  V +   +Y  G+ VK KILKVD EK +ISLG+K+S
Sbjct: 1333 GAFVTIDGTANLSGLCHRSEMAEQKVADARKLYEQGDLVKAKILKVDTEKAQISLGLKAS 1392

Query: 1531 YFKND--ADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAV-QDMDMESEDGGSLVLAQ 1587
            YF  D  AD+    +  + + + ++ G  N  ++L + S    +D+ M     G + L Q
Sbjct: 1393 YFNEDSEADSDMGEAASDDESSDDDFGGVNLETVLSDDSSDDGEDIIM-----GGVNLPQ 1447

Query: 1588 IESRASVPPLEVNLDDEQPDMDNGISQNQG--------HTDEAKTIDEKNN-------RH 1632
            I    S+P    N DD Q   D+      G         T  A+   + +N         
Sbjct: 1448 I----SIPIANANDDDVQMADDDDDDDEAGGLVTGGFDWTGNARKAHQTSNNAGSDSDEQ 1503

Query: 1633 AKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVE 1692
            A  K+K+ R+ EI+      L+ + P+T  ++ERL+   P+SS +W+KYMAF L + +V+
Sbjct: 1504 AVSKKKKRRKAEIQVDRTGDLDVNGPQTVADYERLLLGEPDSSLLWLKYMAFHLELGEVD 1563

Query: 1693 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVH 1752
            KAR IAERAL++INI ++ EKLN+WVA  NLEN +G   ++ + +VF+RA QY D +++H
Sbjct: 1564 KAREIAERALRSINISQDTEKLNVWVAMLNLENTFGT--DDRLDEVFKRACQYNDAQEIH 1621

Query: 1753 LALLGLY---ERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQ 1806
              +  ++   ++ E ++ AD++    + KKF  S  ++L     L       +  +A++ 
Sbjct: 1622 ERMASIFIQSDKPEIDQKADQIFQAALKKKFSQSPNLFLNYANFLFDTMAAPDRGRALLP 1681

Query: 1807 RALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1864
            RAL +LP H HI   S+   LEF+  NG  +RGR++FEG+LS +PKR DLW+I LD EI+
Sbjct: 1682 RALQALPAHTHIDLTSKFGQLEFRSPNGDIERGRTVFEGLLSSFPKRVDLWNILLDLEIK 1741

Query: 1865 LGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYLEYEKSV--GEEERI 1908
            +GD + +R LFER + L               L  K+ KF FKK+L +E+SV  G E+ +
Sbjct: 1742 VGDAEQVRRLFERVLGLGHGVNADGSKSGTKKLKDKQAKFFFKKWLAFEESVSGGNEKMV 1801

Query: 1909 EYVKQKAMEYVEST 1922
            + VK +A EYV+S+
Sbjct: 1802 DEVKARAAEYVKSS 1815



 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 216/847 (25%), Positives = 368/847 (43%), Gaps = 82/847 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEV-----------------DAEFEAVERGLHKKNKK 91
           D+ P FPRGG ++LT  ER +I  +                  DA+ E  E+    + K+
Sbjct: 73  DEAPAFPRGGNNALTPLERKQIQIQATRDVLFEQKGASNGELPDADSEIEEQA--DEEKE 130

Query: 92  KKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVI 151
              K  RK  +   +  S+ G   S + P+  + ++ K I+ G KL G V  +   D+ +
Sbjct: 131 ATLKPSRKKQKDKKNKKSVEGTAKS-QGPKIES-LSFKQITPGSKLLGQVTNIGTHDISL 188

Query: 152 CLPGGLRGLARAADALDPILDNEIE--------------ANEDNLLPTIFHVGQLVSCIV 197
            LP  L G      A+  +L  ++E               ++D  L +   +GQ     V
Sbjct: 189 ALPNNLTGYIPWT-AVSKLLKEKVEKLLKDADKEDDEESDDDDFDLKSYVRLGQYFRASV 247

Query: 198 --LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 255
                +++K    K++I LS+       GLS   +     + A V S+ED+G I+  GL 
Sbjct: 248 SSTTANNEKGGRSKKRIELSIDPREANSGLSRSDMIIDSTVQASVISVEDYGLIMDVGLE 307

Query: 256 S--FTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL- 311
                GF+    L   +    VK G +   VV   +    V+ LS++ +  +        
Sbjct: 308 DGETRGFMSSKELPAGTDFSQVKEGAVFLCVVTGHNTAGNVIKLSANLEKAASGKKSHYI 367

Query: 312 -KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 370
               +I+  +PG      V  +  NG+    +      VD  H  +T    +    Y   
Sbjct: 368 SSAPTINTFLPGTAAEILVTEVTPNGMAGKIMGMLDTMVDSVHSGSTDDKRDLTKKYRLG 427

Query: 371 KKVNARILFVDPTSRA--VGLTLNPYLLH------NRAPPSHVK--VGDIYDQSKVVRVD 420
            KV  RI++   +     +G ++  ++L       + A  S  +  +  I  + KV +VD
Sbjct: 428 TKVKGRIIYRVSSDEKPKLGFSILDHVLKFSLTTVDAAQDSKRRPAISAIIPEVKVTKVD 487

Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLA 477
             LGL + + +T      +V IS V + ++  L   E  +K GS    R++GF  ++ L 
Sbjct: 488 PALGLYVQLGTT--EHLGFVHISRVKDGKISSLSPTEGSFKVGSSHEGRVVGFNAMDNLF 545

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMS 532
              L+ +  +       DV  G +VKGK+    I  D   G IV    G+  L P  HM+
Sbjct: 546 LLSLEKNIIDQPFLRLEDVTVGAIVKGKIEKLLIGPDGINGLIVSLADGISGLIPGMHMA 605

Query: 533 EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
           + ++  P KKF+ G E+  R+L V  + +++ +T KK+L+ S+  I   Y + +    + 
Sbjct: 606 DTKLQHPEKKFREGLEVTARILSVNLEKRQLRLTLKKSLLHSESTIWKDYKDISPGNQSP 665

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G +  I+ +G  V+FY  V+GF P SE+      +PS  + VGQVV   ++S      R+
Sbjct: 666 GTLVSIQNNGAVVQFYGAVRGFLPVSEMSEAYIKDPSQHFTVGQVVSVNVLSVDSEKGRL 725

Query: 651 NLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
            +S    P+ V+E      + V+ G LVSGVV   + + +++  +  G     +  E L+
Sbjct: 726 VVS-CKDPSTVTEAYRGALESVRPGQLVSGVVFEKSSDDLLLK-LEDGGLIARLSAEQLS 783

Query: 706 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
           D         S  K    F ++ V    S         S   +  +LP+    +  NS V
Sbjct: 784 DS--------SPSKAASNFARIRVGAKASWPFNTQHTESSPPNPGKLPAKFEELQLNSSV 835

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV-GQSVRSNILDVNSETG 824
            G V NI   G FV FL  LTGF P+ + VD + ++ +   ++  Q++  ++  +  +T 
Sbjct: 836 TGLVKNITADGIFVEFLEGLTGFLPK-RLVDDEHSNRTDFGFMRSQTISCSVSSIEQDTQ 894

Query: 825 RITLSLK 831
           R  L++K
Sbjct: 895 RFILTMK 901



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 132/595 (22%), Positives = 243/595 (40%), Gaps = 112/595 (18%)

Query: 949  ANSNRQAQKKKR------KREASK-----DLGVHQTVNAIVEIVKENYLVLSLP-EYNHS 996
            AN+ +  + KKR       REA+      D+ +  TV A V  V++  L++ +  E   +
Sbjct: 252  ANNEKGGRSKKRIELSIDPREANSGLSRSDMIIDSTVQASVISVEDYGLIMDVGLEDGET 311

Query: 997  IGYASVSDYNTQKFPQ----KQFLNGQSVIATVMALPSSSTAGRLLLLL----KAISETE 1048
             G+ S     +++ P      Q   G   +  V      +TAG ++ L     KA S  +
Sbjct: 312  RGFMS-----SKELPAGTDFSQVKEGAVFLCVVTG---HNTAGNVIKLSANLEKAASGKK 363

Query: 1049 TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIH------ITEVNDDKSN 1102
            +     A   +++  G+  +  +TE+ P         G  G+I       +  V+   ++
Sbjct: 364  SHYISSAPTINTFLPGTAAEILVTEVTP--------NGMAGKIMGMLDTMVDSVHSGSTD 415

Query: 1103 VVENLFSNFKIGQTVTARII---AKSNKPDMKKSFLWELSIKPSMLTV------------ 1147
               +L   +++G  V  RII   +   KP +  S L  + +K S+ TV            
Sbjct: 416  DKRDLTKKYRLGTKVKGRIIYRVSSDEKPKLGFSILDHV-LKFSLTTVDAAQDSKRRPAI 474

Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1207
            S I  ++   + D ++G  V             + ISR    ++    S+  P+E     
Sbjct: 475  SAIIPEVKVTKVDPALGLYVQ---LGTTEHLGFVHISRVKDGKI----SSLSPTE----- 522

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVL------RPFQDGISDKTVDISNDNMQTFIHEGD 1261
              F +G +  G V+  N    L  L L      +PF   + D TV             G 
Sbjct: 523  GSFKVGSSHEGRVVGFNAMDNLFLLSLEKNIIDQPFLR-LEDVTV-------------GA 568

Query: 1262 IVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318
            IV G+I K+L    G+ GL+V +   + G +    + +  +  P   + EG  V  ++L 
Sbjct: 569  IVKGKIEKLLIGPDGINGLIVSLADGISGLIPGMHMADTKLQHPEKKFREGLEVTARILS 628

Query: 1319 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1378
            ++   R    + L+L+ SL    ST   D               +D+SP     G + ++
Sbjct: 629  VNLEKR---QLRLTLKKSLLHSESTIWKDY--------------KDISPGNQSPGTLVSI 671

Query: 1379 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
             + G  +     +   + +S +S+ Y++ P + F +G++V+  VLSV+    R+ V+ K 
Sbjct: 672  QNNGAVVQFYGAVRGFLPVSEMSEAYIKDPSQHFTVGQVVSVNVLSVDSEKGRLVVSCK- 730

Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
             D  T +++    L ++  G +V G +    S  L + +E+  L+      +LS+
Sbjct: 731  -DPSTVTEAYRGALESVRPGQLVSGVVFEKSSDDLLLKLEDGGLIARLSAEQLSD 784



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 190/430 (44%), Gaps = 51/430 (11%)

Query: 170  ILDN--EIEANEDNLLPTIFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRL 218
            I DN  +I+  +  L P  F   Q+V   VL + D +           GK  ++ LS + 
Sbjct: 973  IFDNWEDIKDRKQPLRP--FKAKQIVPVKVLGIHDARTHKFLPISHRSGKTPMFELSTKP 1030

Query: 219  SLL----YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI-- 272
            S L    Y+ L++E V+ G  L  ++ +  D    L+   P+  G L   +++++  +  
Sbjct: 1031 STLASPEYEPLTIEKVKVGSSLLGFINNFGDDCLWLNIS-PNVRGKLRIMDISDDLALAG 1089

Query: 273  DVKP----GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328
            D+K     G  L+  V ++D  +  + L++     SK +T       I  L  GM++  +
Sbjct: 1090 DIKKTFPIGSALKVTVTAVDVDKNRLDLTARHGESSKTLT-------ISDLSKGMILLGK 1142

Query: 329  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
            V  + E   ++       G + +  + + +   N    +++++ +   ++ VD  ++ V 
Sbjct: 1143 VTKVTERQALVQLNDSLVGAIGLIDMADDYSKIN-PAKFHKNEVLRVCVVDVDVPNKKVS 1201

Query: 389  LTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
            L++ P  + + + P           +KVGDI         D GL ++L    T     AY
Sbjct: 1202 LSVRPSKVLSSSLPVEDPEITSVDKLKVGDIVRGFVRKVADVGLFVMLGHNVT-----AY 1256

Query: 440  VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV---FTHSDV 496
            V +SD+++  +++ + +++    VR RI       G     LK SA +         SD+
Sbjct: 1257 VRVSDLSDAYLKEWQDEFQVDQIVRGRITLVDTEAGKVQMTLKQSALDPNYKPPLQLSDL 1316

Query: 497  KPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            K G +V GKV  V+ FGA V   G   +  LC    M+E ++    K ++ G  +  ++L
Sbjct: 1317 KQGQIVTGKVRKVEEFGAFVTIDGTANLSGLCHRSEMAEQKVADARKLYEQGDLVKAKIL 1376

Query: 555  GVKSKRITVT 564
             V +++  ++
Sbjct: 1377 KVDTEKAQIS 1386



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 166/362 (45%), Gaps = 62/362 (17%)

Query: 1193 ILDSAYEPS--ELQEFQRRFHIGKAVTGHVL---SINKEKKL----LRLVLRPFQDGISD 1243
            ++DS +  S  + ++  +++ +G  V G ++   S +++ KL    L  VL+      S 
Sbjct: 405  MVDSVHSGSTDDKRDLTKKYRLGTKVKGRIIYRVSSDEKPKLGFSILDHVLK-----FSL 459

Query: 1244 KTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTELKNICVSD 1301
             TVD + D+ +       I   +++K+   +G L VQ+G   HL G VH + +K+     
Sbjct: 460  TTVDAAQDSKRRPAISAIIPEVKVTKVDPALG-LYVQLGTTEHL-GFVHISRVKD----- 512

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST-NSSDLSTDVDTPGKHLE 1360
                         K+  +S T  G+F V  S    + G ++  N   LS + +   +   
Sbjct: 513  ------------GKISSLSPT-EGSFKVGSSHEGRVVGFNAMDNLFLLSLEKNIIDQPFL 559

Query: 1361 KIEDLSPNMIVQGYVKNVTS-----KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
            ++ED++   IV+G ++ +        G  + L+  +   +   +++D  ++ PEK+F  G
Sbjct: 560  RLEDVTVGAIVKGKIEKLLIGPDGINGLIVSLADGISGLIPGMHMADTKLQHPEKKFREG 619

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLF 1474
              V  R+LSV    +++ +TLK S     S+S I  +  ++  G+         +S G  
Sbjct: 620  LEVTARILSVNLEKRQLRLTLKKS--LLHSESTIWKDYKDISPGN---------QSPGTL 668

Query: 1475 ITIENTNLV--------GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
            ++I+N   V        G   VSE+SE ++ +    +  G+ V V +L VD EK R+ + 
Sbjct: 669  VSIQNNGAVVQFYGAVRGFLPVSEMSEAYIKDPSQHFTVGQVVSVNVLSVDSEKGRLVVS 728

Query: 1527 MK 1528
             K
Sbjct: 729  CK 730


>gi|417406792|gb|JAA50038.1| Putative rrna processing protein rrp5 [Desmodus rotundus]
          Length = 1876

 Score =  434 bits (1117), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 416/1482 (28%), Positives = 680/1482 (45%), Gaps = 184/1482 (12%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKN----KKKKKKTERKANETVDDLGS 109
            FPRGG     + E+            A ER + + N      ++K T+RK ++T      
Sbjct: 8    FPRGGTRKTHKSEK------------AFERSVEQDNLFDISAEEKSTKRKKSQT------ 49

Query: 110  LFGDGISGKLP---RYANK--------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
              G   S KL    R ++K        ++++++  GM++ G V E NE +LVI LP GL+
Sbjct: 50   --GPAKSKKLKIEKRESSKSVKEKFEILSIESLCEGMRMLGCVKEANELELVISLPNGLQ 107

Query: 159  GLARAADALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRK 211
            G  +  +  D      NE  A E+ L     LP +F  G LV C+V  L   +K  G++ 
Sbjct: 108  GFVQVTEICDAYTKKLNEQVAQEEPLKDLASLPELFSPGMLVRCVVSSLGITEK--GRKS 165

Query: 212  IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE--- 268
            + LSL    + K LS E ++ GM+LT  V S EDHGY++  G+     FLP     +   
Sbjct: 166  VKLSLNPKNVNKVLSAEALKPGMLLTGTVSSREDHGYLMDIGVVGARAFLPLQKAQDYVR 225

Query: 269  --NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVS 326
              N G ++K G  L  V+  +     VV LS     VS  +  + +  +++ L+PG++V 
Sbjct: 226  QKNKGAELKMGQYLTCVIEEVKGNGGVVRLSVSHSEVSTAIATEEQNWTLNNLLPGLVVK 285

Query: 327  TRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA 386
             +VQ +   G+ L+FL++FTG VD  HL      T     Y+ ++ V A +L V P +RA
Sbjct: 286  AQVQKVTPLGLTLNFLSFFTGLVDFMHLDPKKAGT-----YSSNQAVRACVLCVHPRTRA 340

Query: 387  VGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS 443
            V L+L P  L    P + +    +G + D   V       G    +    +   AY  +S
Sbjct: 341  VRLSLRPVFLQPGRPLTRLSCQHLGAVLDDIPVQGFFSKAGATFRLKDGSL---AYARLS 397

Query: 444  DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
             +++ +     + +K G+  + RI+ +  ++ LA   L+ S  E    +  D+KPG +VK
Sbjct: 398  HLSDSKSAFSPEAFKPGNTHKCRIINYSQMDELALLSLRTSVIEAQYLSFHDIKPGALVK 457

Query: 504  GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRI 561
            G V+ +  +G +V+    ++ L P  H+++  +  P KK+ VG E+  RVL    ++K++
Sbjct: 458  GTVLTIKPYGMLVKVGEQIRGLVPPMHLADILMKNPEKKYHVGDEVTCRVLLCDPEAKKL 517

Query: 562  TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
             +T KKTLV+SKL  ++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +
Sbjct: 518  MMTLKKTLVESKLPAITCYAKAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAE 577

Query: 622  PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--KPTR------VSEDDLVKLGSLV 673
               +P  +++ GQVVK  +++  P+  R+ LSF +   P +        +   + +G LV
Sbjct: 578  YVPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLLSDPKKEHAGRSQKKGKTINVGQLV 637

Query: 674  SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNE 733
               V   T + + V V+        +P  HL+DH+ +  ++   ++ G    ++L L   
Sbjct: 638  DVKVLEKTKDGLEVAVLPHNIP-AFLPMSHLSDHVPNGPLLYHWLQAGDTLHRVLCLSQS 696

Query: 734  SSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
              ++LLS K +L+++ +  Q P   S IHP  ++ G+V +I + G FV+F   L+G AP+
Sbjct: 697  EGHVLLSRKPALVSTVEGGQDPKSFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPK 756

Query: 792  SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFL 848
            +   D      S  +  GQ+V + + +V+ E  R+ LSL+ S CS  D    S +     
Sbjct: 757  AIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCSLGDRATTSLLLLSQC 816

Query: 849  LEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI--- 904
            LEE+  +     +  S L + +   I G V++ +V E    G VV F E   V G +   
Sbjct: 817  LEERQGVRSLMSNRDSVLIQTLAEMIPGMVLDLEVQEVLGDGSVV-FSE-GPVPGLVLRA 874

Query: 905  THHQLAGATVESGSVIQAAIL--DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKR 962
            + +  AG  V +G   +A IL  DV K E  V L    V          NR+A+K K+  
Sbjct: 875  SRYHRAGQEVGAGQKKKAVILHVDVVKLEVHVSLCRDLV----------NRKAKKLKKGS 924

Query: 963  EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSV 1021
            E       HQ   A+V+ ++E++ V SL E  H   ++  +  N T +F  ++   GQ V
Sbjct: 925  E-------HQ---AVVQYLEESFAVASLVETGHLAAFSLAAHLNDTFRFDSEKLQVGQGV 974

Query: 1022 IATVMALPSSSTAGRLLLLLKAISETETSSSKR-------------------AKKKSSYD 1062
              T+       T    LL ++  +   T    R                    KKK +  
Sbjct: 975  SLTLKTTEPGVTG--FLLAVEGPAAKRTMRQTRKDSETVDEDDEGDPAMVVGTKKKHALS 1032

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            +G +V   +  IKP  + +    G  G IH + + D+   +  +  +  K+G+TVTAR+I
Sbjct: 1033 IGDMVTGTVKSIKPTHVVVTLQNGIIGCIHASHILDE-VPLGTSPTAKLKVGKTVTARVI 1091

Query: 1123 AKSNKPDMKK-SFL-----------WELSIKPSML-----TVSEIGSKLLFEEC-DVSIG 1164
                  DMK   FL            ELS++PS L     T     S    E+      G
Sbjct: 1092 GGR---DMKTFKFLPISHPRFIRTIPELSVRPSELAKDGRTALNTHSVSPSEKIKQYQAG 1148

Query: 1165 QRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            Q VT ++  Y V  +W  + I+  ++ ++ +L ++     L+   + F IG+A+   V+ 
Sbjct: 1149 QTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKNFRIGQALKATVVG 1208

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
             +  K  L L L             I    ++    EG++  GR+ K+     GL V   
Sbjct: 1209 PDSSKAFLCLSL-------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFP 1250

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
                G V    + +     PL  +   + V+C VL  +  V     + LSLRS     S 
Sbjct: 1251 FGRIGSVSLFHVSDSYSETPLEDFTPQKIVRCYVLSSTDEV-----LTLSLRS-----SR 1300

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK---LDAKVLLSN 1399
            TN    S  +D     +  I D+    +++GYVK+V   G    L      L     +S+
Sbjct: 1301 TNPETKSKIIDP---EINSIRDIQEGQLLRGYVKSVQPHGVLFGLGPSVVGLARHPRVSH 1357

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
             S        +  P GKL+  +VLSV      VE++    D+
Sbjct: 1358 CSPSKKALYNRHLPGGKLLTAKVLSVNHQKNLVELSFLPGDT 1399



 Score =  292 bits (748), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/333 (45%), Positives = 223/333 (66%), Gaps = 17/333 (5%)

Query: 1598 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD- 1656
            +V LD   P +       QG + +++  DEK  +  KKK K+ERE E + AE+ L   + 
Sbjct: 1545 DVGLDSLTPALPP-----QGDSSDSEE-DEKPQQATKKKSKKERELEKQKAEKELSRIEE 1598

Query: 1657 -------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1709
                    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ RE
Sbjct: 1599 ALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFRE 1658

Query: 1710 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1769
            E EKLN+WVA  NLEN YG+  +E+++KVF+RA+QY +P KV L L  +Y ++E+ + A 
Sbjct: 1659 EQEKLNVWVALLNLENMYGS--QESLMKVFERAVQYNEPLKVFLQLADIYTKSEKFQEAG 1716

Query: 1770 ELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILE 1828
            EL  +M+K+F+    VW++    LL++ Q G     +QRAL  LP+ +H+  IS+ A LE
Sbjct: 1717 ELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRAMQRALECLPKKEHVDVISKFAQLE 1776

Query: 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888
            F+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+M
Sbjct: 1777 FQLGDAERAKALFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRM 1836

Query: 1889 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            KF FK+YL+YEK  G E+ ++ VK KA++YVE+
Sbjct: 1837 KFFFKRYLDYEKHHGTEKDVQAVKAKALDYVEA 1869



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 142/319 (44%), Gaps = 36/319 (11%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
            +AV   VL ++   + +RL LRP           +S  ++   + +  + G       S 
Sbjct: 325  QAVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLSCQHLGAVLDDIPVQG-----FFSK 379

Query: 1274 VGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
             G    ++ G   Y R+ H ++ K+    +    +  G   KC+++  S+         L
Sbjct: 380  AGATFRLKDGSLAYARLSHLSDSKSAFSPE---AFKPGNTHKCRIINYSQMDELAL---L 433

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
            SLR+S+       +  LS              D+ P  +V+G V  +   G  + +  ++
Sbjct: 434  SLRTSV-----IEAQYLS------------FHDIKPGALVKGTVLTIKPYGMLVKVGEQI 476

Query: 1392 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEI 1449
               V   +L+D  +++PEK++ +G  V  RVL  +P +K++ +TLK +  +S+  +   I
Sbjct: 477  RGLVPPMHLADILMKNPEKKYHVGDEVTCRVLLCDPEAKKLMMTLKKTLVESKLPA---I 533

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
               +    G    G I RV+ YG  +   N ++ GL    ELS ++V + E ++  G+ V
Sbjct: 534  TCYAKAKPGLQTHGFILRVKDYGCIVKFYN-DVQGLVPKHELSAEYVPDPERVFYTGQVV 592

Query: 1510 KVKILKVDKEKRRISLGMK 1528
            KV +L  +  K R+ L  K
Sbjct: 593  KVAVLNCEPSKERMLLSFK 611



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 188/463 (40%), Gaps = 59/463 (12%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
             RLK G   + R+  + ++D KS         FK G T   RII  S   ++    L   
Sbjct: 384  FRLKDGSLAYARL--SHLSDSKSAFSPE---AFKPGNTHKCRIINYSQMDELALLSLRTS 438

Query: 1139 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
             I+   L+  +I    L +   ++I  +  G + KV  +   L    HL   L       
Sbjct: 439  VIEAQYLSFHDIKPGALVKGTVLTI--KPYGMLVKVGEQIRGLVPPMHLADIL------- 489

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS-----NDNM 1253
                ++  ++++H+G  VT  VL  + E K L + L+  +  +  K   I+        +
Sbjct: 490  ----MKNPEKKYHVGDEVTCRVLLCDPEAKKLMMTLK--KTLVESKLPAITCYAKAKPGL 543

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
            QT    G I+  R+        G +V+    + G V   EL    V DP   +  GQ VK
Sbjct: 544  QT---HGFIL--RVKDY-----GCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVK 593

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
              VL    +        LS +   D              +  G+  +K + ++   +V  
Sbjct: 594  VAVLNCEPSKERML---LSFKLLSDPKK-----------EHAGRSQKKGKTINVGQLVDV 639

Query: 1374 YVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG----RVLSVEPL 1428
             V   T  G  + +L   + A + +S+LSD     P        L AG    RVL +   
Sbjct: 640  KVLEKTKDGLEVAVLPHNIPAFLPMSHLSDHVPNGP---LLYHWLQAGDTLHRVLCLSQS 696

Query: 1429 SKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
               V ++ K +   T    +   + S +H G ++IG +K ++ YG+F+    + L GL  
Sbjct: 697  EGHVLLSRKPALVSTVEGGQDPKSFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAP 755

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 756  KAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLS 798



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 45/251 (17%)

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 1064
            +   K P K F  GQ++ ATV+  P SS A   L L+                    + G
Sbjct: 1186 FKVLKHPDKNFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEEG 1229

Query: 1065 SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
             +    + ++ P E L + F  G  G + +  V+D  S   E    +F   + V   +++
Sbjct: 1230 EVAMGRVVKVTPNEGLTVSFPFGRIGSVSLFHVSDSYS---ETPLEDFTPQKIVRCYVLS 1286

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1179
             +++       +  LS++ S  T  E  SK++  E     D+  GQ + GYV  V     
Sbjct: 1287 STDE-------VLTLSLRSSR-TNPETKSKIIDPEINSIRDIQEGQLLRGYVKSVQPHGV 1338

Query: 1180 L-------LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
            L       + ++RH +       S   PS+   + R    GK +T  VLS+N +K L+ L
Sbjct: 1339 LFGLGPSVVGLARHPRV------SHCSPSKKALYNRHLPGGKLLTAKVLSVNHQKNLVEL 1392

Query: 1233 VLRPFQDGISD 1243
               P   G  D
Sbjct: 1393 SFLPGDTGKPD 1403


>gi|261204755|ref|XP_002629591.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis SLH14081]
 gi|239587376|gb|EEQ70019.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis SLH14081]
          Length = 1817

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 393/1437 (27%), Positives = 693/1437 (48%), Gaps = 189/1437 (13%)

Query: 583  ATDRLITHGWITKIEKH-GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKC 638
            A   +I    +TK+E   G +V+F +   GFA  S L    +D        Y V    + 
Sbjct: 468  AISAIIPEVKVTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVDSTHEA 527

Query: 639  RIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYV 689
            RI+     S   NL  +    +V +   ++L     G++V G ++  ++  + +  ++  
Sbjct: 528  RIVG---FSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLIVS 584

Query: 690  IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLIN 747
            +A G S G +   H++D  L+H    +   + G +   ++L ++ +   L L+ K SL+N
Sbjct: 585  LADGIS-GLVAGMHMSDTKLQHP---EKKFREGAQVSARILSVNLDKRQLRLTLKKSLLN 640

Query: 748  SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 807
            S      D + I P +   G + +I   G  V+F G + GF P S+  +    D ++ + 
Sbjct: 641  SESPAWKDYNGILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFN 700

Query: 808  VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
            VGQ V  + L+V+ E  ++ +S K        +SF + +    E I       H G    
Sbjct: 701  VGQVVNVHALNVDVELRKLVVSCKDP------SSFTEAYKSAFENI-------HPGDT-- 745

Query: 868  WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILD 926
             V G +     E  + +  D G+V          G  + + +A A +  G  + +  IL+
Sbjct: 746  -VSGTVFEKSSEDILLKLEDTGLVARLNAEHVADGQTSRNGVALARIRVGQKLNELLILN 804

Query: 927  VAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYL 986
            + KA RL+ ++ K           S +QA+++       +DL     V   V+ +  + +
Sbjct: 805  IQKAHRLIKVTNKP----------SLKQARQRGELPARFEDLKEGAKVTGFVKNITVDGM 854

Query: 987  VLSLPEYNHSI-GYAS---VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK 1042
             +   E+   I G+A    V D +  K P   +   Q +  +V ++       R +L +K
Sbjct: 855  FV---EFLGGITGFAPKRLVDDDHVNK-PDFGYFLSQPISLSVESIEDDRQ--RFILRMK 908

Query: 1043 AISETETSSS-----------------KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGI 1085
                 + +S                  +  K       G + +A++  +K  ++ ++   
Sbjct: 909  EQVNKQRASDGVKPANNVNQSSINPIDENIKSLDDLTFGRVTKAKVVSVKETQINVQLAE 968

Query: 1086 GFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARII----AKSNK--PDMKKSF--- 1134
               GRI ++EV D  D     +     FK  Q +  R++    A+S+K  P   +S    
Sbjct: 969  NIQGRIDVSEVFDSWDAIKDRKQPLKYFKAKQIIPVRVLGIHDARSHKFLPISHRSGKYP 1028

Query: 1135 LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194
            ++ELS KPS L  +++    L +   V IG    G+V  + ++   + IS +++ +L   
Sbjct: 1029 VFELSAKPSSLQSTDLEPLSLDK---VKIGSSWVGFVNNIGDDCLWINISPNVRGRLRFT 1085

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----PFQDGISDKTVDISN 1250
            D + + S + +  + F +G A+  HV  ++ +K  L L  R    P +  ISD       
Sbjct: 1086 DLSDDLSLVGDIAKNFPVGSALKIHVTGVDADKNRLDLSARHGGLPNRKSISD------- 1138

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
                 F+ +G+I+ GR++++       +VQ+     G ++      I ++D  S  +   
Sbjct: 1139 -----FL-KGEILLGRVTRVTERQA--LVQLSNSTVGAINL-----IDMADDFSKVNPAD 1185

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
            F K +V+ +         +++  +  L  +S   S  LS+ +      +  I  L  N I
Sbjct: 1186 FHKNEVIRVC-----IIDIDVPNKKIL--LSVRPSRVLSSSLPIQDPEINSISQLKVNDI 1238

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            V+G+V+ V + G F+ L   + A + +S+LSD Y++  + EF + +LV GR++  +  S 
Sbjct: 1239 VRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQNEFQVDQLVRGRIILADAESN 1298

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVS 1489
            +++++LK S      ++ I  + +L  G IV G+++ VE +G FI I+ T NL GLCH +
Sbjct: 1299 KLQMSLKESVLEPNYKTPIT-IKDLKRGQIVTGKVRNVEEFGAFIVIDGTANLSGLCHRT 1357

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1549
            E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+       S +E +DE
Sbjct: 1358 EMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERISLGLKASYFKD-------SDDESNDE 1410

Query: 1550 AIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD 1609
            + ++V   N S   ++       MD+E E G  + +  ++   ++     N DD + D  
Sbjct: 1411 SADDVSEENVSESEDDGG-----MDLELESGDDISMGGVDMEDAI-----NGDDSESDAS 1460

Query: 1610 NGISQNQGHTDEA------------------------KTIDEKNNRHAKKKEKEEREQEI 1645
            +   Q  G  D A                         +  E +N+   KK++  R+ EI
Sbjct: 1461 DEDVQMAGTEDPAVKGGLVTSGFDWNGNTTTGAGEGNDSGSESDNQTVTKKKR--RKPEI 1518

Query: 1646 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1705
            +      L+ + P++  ++ERL+   P+SS +W+KYMAF L +++V+KAR IAERAL++I
Sbjct: 1519 QVDRTGDLDANGPQSIADYERLLLGEPDSSLLWLKYMAFQLELSEVDKAREIAERALRSI 1578

Query: 1706 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1765
            +I ++ EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  L  +Y ++ +N
Sbjct: 1579 SIGQDTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHERLTSIYIQSGKN 1636

Query: 1766 KLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFIS 1822
              ADEL    + KKF  S  ++L     L     + E  +A++ RA+ +LP H H+   S
Sbjct: 1637 DKADELFQATLKKKFTQSPNIYLNFATFLFDTLAEPERARALLPRAIQALPAHTHVDITS 1696

Query: 1823 QTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880
            +   LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI+ G+V+ +R LFER + 
Sbjct: 1697 KFGQLEFRSPNGDIERGRTIFEGLLSSFPKRVDLWNVLLDLEIKSGEVEQVRRLFERVLG 1756

Query: 1881 LS--------------LPPKKMKFLFKKYLEYEKSVGE--EERIEYVKQKAMEYVES 1921
            L               L  K+ KF FKK+L +E+  G+  E+ ++ VK +A EYV++
Sbjct: 1757 LGHGIAADGTKTVSKKLKDKQAKFFFKKWLTFEEKAGDGNEKMVDEVKARAAEYVKA 1813



 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 209/855 (24%), Positives = 358/855 (41%), Gaps = 79/855 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE---AVERGLHKKNKKKKKKTERKA--- 100
           D+ P FPRGG   LT  E+ +I   A  D  FE   A  +G      +K+KK+ + +   
Sbjct: 67  DEEPAFPRGGASVLTPLEQKQIQIQATRDVLFEQKGAPFQGHADDEDEKEKKSSKVSGGK 126

Query: 101 ---------NETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVI 151
                      TV +  +  G  I G        +  K I  G K+ G V+ +N  D+ +
Sbjct: 127 CKKGKTKAKRNTVSEAPAKEGVRIEG--------LNFKRIVIGSKVLGQVSSINAHDIGL 178

Query: 152 CLPGGLRG---LARAADALDPILDNEIEANEDNLLP--------------TIFHVGQLVS 194
            LP  L G   +   +  L   ++N +++N++                  + F +GQ + 
Sbjct: 179 SLPNNLTGYIPITAVSRTLQQKIENLLKSNQEENDNSDDDEEEEEDLDLNSYFKLGQYLR 238

Query: 195 CIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
             VL  + +    K  GK+ I LS+       GLS   +     + A V S+EDHG ++ 
Sbjct: 239 ASVLSTETEVNHGKTKGKKHIRLSVDPREANSGLSKSDLVVNATVQASVLSVEDHGLVMD 298

Query: 252 FGLPS--FTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 308
            GL      GF+    +  +  +  +K G +   VV   +    VV LS++  T      
Sbjct: 299 LGLQDGQTKGFMSSKEIPHDLEVSQIKEGSVFLCVVTGHNADGSVVKLSANLPTAGSIKK 358

Query: 309 KDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 366
                   +I+  +PG      +  +   G+    +      VD+     T    +    
Sbjct: 359 SHFLTSAPTINSFLPGTAAEILLTEVTSTGMAGKIMGMLNAVVDLVQSGTTTGKEDITTK 418

Query: 367 YNQHKKVNARILFVDPTSRAVGLTLN---------PYLLHNRAPPSHV-KVGDIYDQSKV 416
           Y+   K+  R++   PT   + L  +         P +L  +        +  I  + KV
Sbjct: 419 YHVGAKIKGRLICTFPTVEPMKLGFSILDHVVKFTPTVLEQKPSSEDTPAISAIIPEVKV 478

Query: 417 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 476
            +V+ GLG+ +              +SD   + +   +  YK  S    RI+GF  L+ L
Sbjct: 479 TKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVDSTHEARIVGFSALDNL 538

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHM 531
               L+    +       DV  G VV+GK+    I  D   G IV    G+  L    HM
Sbjct: 539 YLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLIVSLADGISGLVAGMHM 598

Query: 532 SEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
           S+ ++  P KKF+ GA++  R+L V    +++ +T KK+L+ S+      Y        +
Sbjct: 599 SDTKLQHPEKKFREGAQVSARILSVNLDKRQLRLTLKKSLLNSESPAWKDYNGILPGNQS 658

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G I  I+ HG  V+FY  V+GF P SE+      +P+  ++VGQVV    ++     R+
Sbjct: 659 PGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNVGQVVNVHALNVDVELRK 718

Query: 650 INLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
           + +S    P+  +E      + +  G  VSG V   +   +++ +   G     +  EH+
Sbjct: 719 LVVS-CKDPSSFTEAYKSAFENIHPGDTVSGTVFEKSSEDILLKLEDTGLV-ARLNAEHV 776

Query: 705 AD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDASHI 759
           AD       V  + I+ G + ++LL+L+ + ++ L+  + K SL  + Q  +LP+    +
Sbjct: 777 ADGQTSRNGVALARIRVGQKLNELLILNIQKAHRLIKVTNKPSLKQARQRGELPARFEDL 836

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
              + V G+V NI   G FV FLG +TGFAP+    D         Y++ Q +  ++  +
Sbjct: 837 KEGAKVTGFVKNITVDGMFVEFLGGITGFAPKRLVDDDHVNKPDFGYFLSQPISLSVESI 896

Query: 820 NSETGRITLSLKQSC 834
             +  R  L +K+  
Sbjct: 897 EDDRQRFILRMKEQV 911



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 106/497 (21%), Positives = 200/497 (40%), Gaps = 72/497 (14%)

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVGAEL 549
            D+  G V K KV++V      VQ    ++    +  +   ++ +K    P K FK    +
Sbjct: 943  DLTFGRVTKAKVVSVKETQINVQLAENIQGRIDVSEVFDSWDAIKDRKQPLKYFKAKQII 1002

Query: 550  VFRVLGVKSKR----ITVTHKKTLVKS-KLAILSSYAEATDR--------LITHGWITKI 596
              RVLG+   R    + ++H+       +L+   S  ++TD          I   W+  +
Sbjct: 1003 PVRVLGIHDARSHKFLPISHRSGKYPVFELSAKPSSLQSTDLEPLSLDKVKIGSSWVGFV 1062

Query: 597  EKHG--C-FVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIMSSIPASRRIN 651
               G  C ++     V+G    ++L  D     + +  + VG  +K  +        R++
Sbjct: 1063 NNIGDDCLWINISPNVRGRLRFTDLSDDLSLVGDIAKNFPVGSALKIHVTGVDADKNRLD 1122

Query: 652  LSFMMK--PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
            LS      P R S  D +K G ++ G V  VT    +V +     S  T+   +L D  +
Sbjct: 1123 LSARHGGLPNRKSISDFLK-GEILLGRVTRVTERQALVQL-----SNSTVGAINLIDMAD 1176

Query: 710  HATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQLP------SDASHIHP 761
              + +        E  ++ ++D +  N  +LLS + S + S+  LP      +  S +  
Sbjct: 1177 DFSKVNPADFHKNEVIRVCIIDIDVPNKKILLSVRPSRVLSSS-LPIQDPEINSISQLKV 1235

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
            N +V G+V  +   G FV     +T +   S   D    +    + V Q VR  I+  ++
Sbjct: 1236 NDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQNEFQVDQLVRGRIILADA 1295

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
            E+ ++ +SLK+S         ++ ++     I  L+                 G ++ GK
Sbjct: 1296 ESNKLQMSLKESV--------LEPNYKTPITIKDLKR----------------GQIVTGK 1331

Query: 882  VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLV 934
            V    +FG  +  +  +++ G     ++A   VE        G +++A I+ +   +  +
Sbjct: 1332 VRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERI 1391

Query: 935  DLSLK-TVFIDRFREAN 950
             L LK + F D   E+N
Sbjct: 1392 SLGLKASYFKDSDDESN 1408



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 129/278 (46%), Gaps = 32/278 (11%)

Query: 315  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
            SI   + G ++  RV  + E   ++       G +++  + + F   N   D+++++ + 
Sbjct: 1135 SISDFLKGEILLGRVTRVTERQALVQLSNSTVGAINLIDMADDFSKVN-PADFHKNEVIR 1193

Query: 375  ARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGLG 424
              I+ +D  ++ + L++ P  + + + P         S +KV DI  +  V RV + GL 
Sbjct: 1194 VCIIDIDVPNKKILLSVRPSRVLSSSLPIQDPEINSISQLKVNDIV-RGFVRRVANNGLF 1252

Query: 425  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 484
            + L    T     AY+ ISD+++  +++ + +++    VR RI+    L    +  L+ S
Sbjct: 1253 VTLGHDVT-----AYIRISDLSDSYLKEWQNEFQVDQLVRGRII----LADAESNKLQMS 1303

Query: 485  AFEGLV-------FTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFE 535
              E ++        T  D+K G +V GKV  V+ FGA +   G   +  LC    M+E +
Sbjct: 1304 LKESVLEPNYKTPITIKDLKRGQIVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGK 1363

Query: 536  IVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
            +    K F+ G  +  +++ +    +RI++  K +  K
Sbjct: 1364 VEDARKVFEKGDIVKAKIIKIDLNKERISLGLKASYFK 1401


>gi|378726693|gb|EHY53152.1| 30S ribosomal protein S1 [Exophiala dermatitidis NIH/UT8656]
          Length = 1811

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 369/1413 (26%), Positives = 675/1413 (47%), Gaps = 171/1413 (12%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
            G +++      GFA  S L  D      E S  + +G   K RI+   P      +S   
Sbjct: 472  GIYLQLSPNTVGFAHVSRLSDDKVEMLSETSGPFKLGSEHKARIIEYNPVDDLYLVSLQK 531

Query: 657  KPTRVS----EDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-H 707
            K    S    ED  V LG++V   ++  +V P+ V  +V  +A+G S G +P  HL+D  
Sbjct: 532  KVLEQSFLRYED--VPLGAIVKATIEKLLVGPDGVRGLVVNLAEGIS-GLVPQIHLSDVE 588

Query: 708  LEHATVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
            L+H         P  +F +       ++  D +   + L+ K +L+NS Q+       I 
Sbjct: 589  LKH---------PERKFREGQTVTARVITTDPQKKRIRLTLKKTLVNSDQKPWLRYEDIE 639

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
                  G +  +   G  VRF G + GF P S+  +    D ++ + VGQ V    + VN
Sbjct: 640  SGDSTLGTLTKVDPLGAVVRFYGPVRGFLPVSEMSEAYIKDATEHFRVGQVVTVTAISVN 699

Query: 821  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
                R+T+S     C   +                    K N S    +     G++++G
Sbjct: 700  PAERRLTVS-----CRDIN--------------------KSNPSIESSLSSLEPGTIVKG 734

Query: 881  KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
             V E +   +++  +    +      H   G++ +     ++A   +   ++L D+ +  
Sbjct: 735  TVFEKSQDDILLRLDGSDAIARLTKDHVSDGSSKKR----ESAFNKIRVGQKLEDVVVLQ 790

Query: 941  VFIDRFREANSNRQAQKKKRKR----EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
            V   R     SN+Q+  K  +     ++ + L  +  V   V  +  + + +S       
Sbjct: 791  VLPKRRLVMVSNKQSLIKAAQEGTLLKSYEQLQPNALVTGFVSNITSDGVFVSFAGGISG 850

Query: 997  I---GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK---AISETETS 1050
            +       V   + + F   +F   Q V A V+++       R  L ++   A +  E +
Sbjct: 851  LITKAQVPVEATDERDFGMTKF---QPVTAKVLSIDYKGATPRFWLTMRENPANTRPEPA 907

Query: 1051 SSK-------------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 1097
            ++                K  +   VG + +A I  +K  ++ ++      GRI  +E+ 
Sbjct: 908  AAAVQDVPALVNPVDTELKTINDLSVGRVTKARIISVKDTQINVELAKDVQGRIDASEIF 967

Query: 1098 DDKSNVVEN--LFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLT 1146
            D+  ++ +       F   Q +T +I+   +  + +         K+ ++ELS KPS  T
Sbjct: 968  DEWKDIKDRKRPLKQFSPKQELTVKILGAHDTRNHRFLPLTHRNGKNTVFELSCKPS--T 1025

Query: 1147 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1206
            V+   + +L +  D+S+G     +V  +      + IS  ++ ++   D + + S     
Sbjct: 1026 VAAPNNSIL-KLTDLSVGSSWLAFVNNISENGLWVNISPSVRGRIRATDVSDDLSLAANL 1084

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            ++ F IG A+  HVL+++ EK  L L  R   DG++  ++ I +      + +G ++ GR
Sbjct: 1085 EKAFPIGSALKVHVLAVDPEKNRLDLTAR--SDGLA-SSLTIKD------VSKGLVLPGR 1135

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGT 1326
            ++++      ++VQ+     G V       I ++D  +  +  +F K  +L +       
Sbjct: 1136 VTRVTDR--NILVQLSDQAVGAVDL-----IDMADDYNEANPAKFQKNDILRVC------ 1182

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1386
              +++ + +    +S+  S  LS+ +      +  I  LS N +V+G++ NV+ KG F+ 
Sbjct: 1183 -VLKVDVPNKKIQLSTRPSKVLSSSMKVTDPEITSISQLSVNDVVRGFISNVSDKGVFVT 1241

Query: 1387 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1446
            L   + A V +++LSD +++  +  F   +LV G+++ ++  S  V+++LK S      +
Sbjct: 1242 LGHGVTAFVRVTHLSDSFLKEWKDHFQRDQLVKGKIIMIDQASGHVQMSLKESALDPNYK 1301

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRA 1505
            + +   ++LHVGDIV G++ +VE +G+FI ++N+ N+ GLCH SE++E  V++   +++ 
Sbjct: 1302 APLT-FNDLHVGDIVTGKVVKVEPFGVFIAVDNSENVRGLCHRSEIAEKRVEDATKLFKE 1360

Query: 1506 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLEN 1565
            G+ VK K+LK+D  +R+++ GMK+SYF +  D+    SE +SD      G    + L E+
Sbjct: 1361 GDAVKAKVLKLDPAQRKVNFGMKASYFIDTVDD-DAESEADSDTESHVSGG---AQLGED 1416

Query: 1566 SSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEA--- 1622
                +QD D   + G     +  +     P     +D E  + D+  ++ Q   D A   
Sbjct: 1417 EDEDMQDAD---DSGEEEDASDSDDDEDDPDNASEVDGETGESDDSEAEEQEVKDSAAAS 1473

Query: 1623 ------------------------------KTIDEKNNRHAKKKEKEEREQEIRAAEERL 1652
                                           + DE  +  AK  +K+++   I+      
Sbjct: 1474 QGKGLNVGGFNWYGMPEAPSTTGSKRAAEESSSDEDADTAAKVPKKKKKRAGIQVDRTGD 1533

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L+ D P++ D+FERL+ S P+SS +W++YMAF L + D ++AR I ERAL++I + +E E
Sbjct: 1534 LDVDGPQSIDDFERLLMSEPDSSLLWLQYMAFHLELGDADQARQIGERALKSIGLGQEAE 1593

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLN+WVA  NLEN YG+  +E +  +F+RA +Y DP++++  L  +Y ++ ++  ADEL 
Sbjct: 1594 KLNVWVALLNLENAYGD--DETIEAIFKRACEYNDPQEIYSRLTSIYIQSGKHDKADELF 1651

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830
             +M+KKF    KVW+     L  +    +  +A++ RAL +LP+  H     + A LEFK
Sbjct: 1652 QRMLKKFAQDPKVWINYATFLFDRVGDADKARALLPRALQTLPKFTHFDTTLKFAQLEFK 1711

Query: 1831 --NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888
              NG+A+RGR++FEG++S +PKR DL+++ LD E++ GD + IR LFER  S  L PK+ 
Sbjct: 1712 SPNGLAERGRTIFEGLISSFPKRVDLFNVLLDLELKQGDREQIRALFERVFSGRLKPKQA 1771

Query: 1889 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            K+ FK++L +E++ G+E ++E VK +A E++ +
Sbjct: 1772 KYFFKRWLAFEEAEGDERQVEAVKARAAEWIRA 1804



 Score =  213 bits (542), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 252/1000 (25%), Positives = 431/1000 (43%), Gaps = 139/1000 (13%)

Query: 3   ASSRKSQKKSSKDG-PKFNKASKNQFKNSKKQIND-AVEAQDLALPPDDDVPVFPRGGGH 60
           AS++ + K+S  D  PK   AS +  ++ K + N  +V A++         P FPRGG  
Sbjct: 13  ASTKPATKRSKSDSKPKAEAASTSSAQDKKAKPNSVSVLAKEQ--------PAFPRGGAG 64

Query: 61  SLTQRERDEIH--AEVDAE---------FEAVERGLH-------------------KKNK 90
            LT  ER +I   A  DAE         F+   + LH                   K+ +
Sbjct: 65  VLTPLERKQIQKKATRDAEREQKQGRDLFDEGSKSLHDTSDEEAPSDVDTEVKKPTKRQR 124

Query: 91  KKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLV 150
           KKK +++  A+ T  ++       I G        ++ K ++ G  + G +  V+ + L 
Sbjct: 125 KKKARSKDAADTTEPEVR------IEG--------LSYKRLTTGSLILGQITAVSSRTLT 170

Query: 151 ICLPGGLRGL-------ARAADALDPILDNEIEANEDNL-----------LPTIFHVGQL 192
           + LP  L G        A+ ++ +  +L NE +  ED+            L   FHVGQ 
Sbjct: 171 VALPNNLVGYVPLTSISAQLSEKIQALL-NEKDEEEDSNDSGDEDDDDIALTNYFHVGQY 229

Query: 193 VSCIVLQLDDDK---KEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
           +   V   + D    K   KR+I LS++ SL   G+    +  G  +   V SIEDHG +
Sbjct: 230 LRVAVTSTEQDNTAGKAPTKRRIELSVQPSLTNVGIGRANLALGATVQVAVSSIEDHGLV 289

Query: 250 LHFGLP--SFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 306
               L   +  GF+P++ L  +  +  +K G +    V  +  + +VV LS+DP      
Sbjct: 290 ADLALEDQNVRGFIPKSQLPASLPLSSIKTGSVFLCSVIELGSSGRVVKLSADPSKWIPL 349

Query: 307 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 366
            T      S+D  +PG      V++  E G+    +     T D+ H  +      +   
Sbjct: 350 AT----APSVDTFLPGTKAEILVENKTEVGLSGKSMGLVDATADLVHSGSFRDKEAFLAK 405

Query: 367 YNQHKKVNARILFVDPTS--RAVG-------LTLNPYLLHNRAPPSHVKVGDIYDQSKVV 417
           Y   KK++ R++   P S  + +G       L + P    +  P     +  I D + V+
Sbjct: 406 YEAGKKIHGRLICTFPLSETKKLGFSVLQHVLDMEPTANMDGRPEGTPALSSIVDAAPVI 465

Query: 418 RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
           RV+ GLG+ L +    V       +SD   E + +    +K GS  + RI+ +  ++ L 
Sbjct: 466 RVEPGLGIYLQLSPNTVGFAHVSRLSDDKVEMLSETSGPFKLGSEHKARIIEYNPVDDLY 525

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMS 532
              L+    E     + DV  G +VK  +    +  D   G +V    G+  L P  H+S
Sbjct: 526 LVSLQKKVLEQSFLRYEDVPLGAIVKATIEKLLVGPDGVRGLVVNLAEGISGLVPQIHLS 585

Query: 533 EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
           + E+  P +KF+ G  +  RV+    + KRI +T KKTLV S       Y +      T 
Sbjct: 586 DVELKHPERKFREGQTVTARVITTDPQKKRIRLTLKKTLVNSDQKPWLRYEDIESGDSTL 645

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G +TK++  G  VRFY  V+GF P SE+      + +  + VGQVV    +S  PA RR+
Sbjct: 646 GTLTKVDPLGAVVRFYGPVRGFLPVSEMSEAYIKDATEHFRVGQVVTVTAISVNPAERRL 705

Query: 651 NLSFM----MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA- 705
            +S        P+  S    ++ G++V G V   + + +++ +       G+     L  
Sbjct: 706 TVSCRDINKSNPSIESSLSSLEPGTIVKGTVFEKSQDDILLRL------DGSDAIARLTK 759

Query: 706 DHLEHATVMK-----SVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQQ--LPSDA 756
           DH+   +  K     + I+ G + + ++VL    +   +++S K SLI +AQ+  L    
Sbjct: 760 DHVSDGSSKKRESAFNKIRVGQKLEDVVVLQVLPKRRLVMVSNKQSLIKAAQEGTLLKSY 819

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK----AVDGQRADLSKTYYVGQSV 812
             + PN++V G+V NI   G FV F G ++G   +++    A D +   ++K   V   V
Sbjct: 820 EQLQPNALVTGFVSNITSDGVFVSFAGGISGLITKAQVPVEATDERDFGMTKFQPVTAKV 879

Query: 813 RSNILDVNSETGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            S  +D    T R  L+++++  ++     A+ +Q+   L   +          +ELK +
Sbjct: 880 LS--IDYKGATPRFWLTMRENPANTRPEPAAAAVQDVPALVNPV---------DTELKTI 928

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL 909
               +G V + ++    D    ++ E   DV G I   ++
Sbjct: 929 NDLSVGRVTKARIISVKD--TQINVELAKDVQGRIDASEI 966



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 165/372 (44%), Gaps = 29/372 (7%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            + L ++S G      V  ++E  L + +   +RG  RA D  D   D  + AN    L  
Sbjct: 1034 LKLTDLSVGSSWLAFVNNISENGLWVNISPSVRGRIRATDVSD---DLSLAAN----LEK 1086

Query: 186  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
             F +G  +   VL +D +K  +      L+ R   L   L+++ V +G+VL   V  + D
Sbjct: 1087 AFPIGSALKVHVLAVDPEKNRLD-----LTARSDGLASSLTIKDVSKGLVLPGRVTRVTD 1141

Query: 246  HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDP 300
               ++        G +   ++A++   +  P       +L+  V  +D   K + LS+ P
Sbjct: 1142 RNILVQLS-DQAVGAVDLIDMADDYN-EANPAKFQKNDILRVCVLKVDVPNKKIQLSTRP 1199

Query: 301  DTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              V  S     D +  SI  L    +V   + ++ + GV ++     T  V + HL ++F
Sbjct: 1200 SKVLSSSMKVTDPEITSISQLSVNDVVRGFISNVSDKGVFVTLGHGVTAFVRVTHLSDSF 1259

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQS 414
                WK+ + + + V  +I+ +D  S  V ++L    L  + +AP +   + VGDI    
Sbjct: 1260 -LKEWKDHFQRDQLVKGKIIMIDQASGHVQMSLKESALDPNYKAPLTFNDLHVGDIV-TG 1317

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            KVV+V+   G+ + + ++  +       S++AE+ V    K +KEG  V+ ++L     +
Sbjct: 1318 KVVKVE-PFGVFIAVDNSE-NVRGLCHRSEIAEKRVEDATKLFKEGDAVKAKVLKLDPAQ 1375

Query: 475  GLATGILKASAF 486
                  +KAS F
Sbjct: 1376 RKVNFGMKASYF 1387



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 104/496 (20%), Positives = 205/496 (41%), Gaps = 76/496 (15%)

Query: 492  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVG 546
            T +D+  G V K ++I+V      V+    V+       +  E++ +K    P K+F   
Sbjct: 927  TINDLSVGRVTKARIISVKDTQINVELAKDVQGRIDASEIFDEWKDIKDRKRPLKQFSPK 986

Query: 547  AELVFRVLGVKSKR----ITVTH---KKTLVK------SKLAILSSYAEATDRLITHGW- 592
             EL  ++LG    R    + +TH   K T+ +      +  A  +S  + TD  +   W 
Sbjct: 987  QELTVKILGAHDTRNHRFLPLTHRNGKNTVFELSCKPSTVAAPNNSILKLTDLSVGSSWL 1046

Query: 593  --ITKIEKHGCFVRFYNGVQGFAPRSELG--LDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
              +  I ++G +V     V+G    +++   L         + +G  +K  +++  P   
Sbjct: 1047 AFVNNISENGLWVNISPSVRGRIRATDVSDDLSLAANLEKAFPIGSALKVHVLAVDPEKN 1106

Query: 649  RINLSFMMK--PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            R++L+       + ++  D+ K G ++ G V  VT   ++V +  +    G +    +AD
Sbjct: 1107 RLDLTARSDGLASSLTIKDVSK-GLVLPGRVTRVTDRNILVQLSDQAV--GAVDLIDMAD 1163

Query: 707  HLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDA----- 756
                A   K      ++ + +L      +D  +  + LS + S + S+    +D      
Sbjct: 1164 DYNEANPAK------FQKNDILRVCVLKVDVPNKKIQLSTRPSKVLSSSMKVTDPEITSI 1217

Query: 757  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            S +  N VV G++ N+ + G FV     +T F   +   D    +    +   Q V+  I
Sbjct: 1218 SQLSVNDVVRGFISNVSDKGVFVTLGHGVTAFVRVTHLSDSFLKEWKDHFQRDQLVKGKI 1277

Query: 817  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
            + ++  +G + +SLK+S     D ++         K  +  +  H            +G 
Sbjct: 1278 IMIDQASGHVQMSLKESAL---DPNY---------KAPLTFNDLH------------VGD 1313

Query: 877  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAK 929
            ++ GKV +   FGV ++ +   +V G     ++A   VE        G  ++A +L +  
Sbjct: 1314 IVTGKVVKVEPFGVFIAVDNSENVRGLCHRSEIAEKRVEDATKLFKEGDAVKAKVLKLDP 1373

Query: 930  AERLVDLSLK-TVFID 944
            A+R V+  +K + FID
Sbjct: 1374 AQRKVNFGMKASYFID 1389


>gi|296423848|ref|XP_002841464.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637704|emb|CAZ85655.1| unnamed protein product [Tuber melanosporum]
          Length = 1787

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 396/1493 (26%), Positives = 713/1493 (47%), Gaps = 176/1493 (11%)

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLV 570
            + G + +  G V A     H S +       KFKVG ++  RV+       T      L 
Sbjct: 386  AVGIVGKVMGLVDATMDFFHASGWREKDIESKFKVGEKIKARVIA------TYAEPHKLA 439

Query: 571  KSKLAILSSYAEA----------TDRLITHGWITKIE-KHGCFVRF-YNGVQGFAPRSEL 618
             S L  + S+             T  +I    I  IE K G  +     GV GF   S +
Sbjct: 440  LSILPHVLSFTRPIENEPTTILPTSTIINSAKILNIEPKTGLSLDVGVPGVPGFVHISRV 499

Query: 619  GLDPGCE----PSSMYHVGQVVKCRIM--SSIPASRRINLS--FMMKPTRVSEDDLVKLG 670
              D   E     S ++  G V   RI+  +S+     +++    + +P    ED  +K+G
Sbjct: 500  SSDSRIEVLSKDSGLHQTGSVHMARIIGYNSMDGLYLVSMEQKVLDQPFLRVED--IKIG 557

Query: 671  SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLL 728
             +V G ++ V  +  V+  +A+G + G +   HL+D  L+H    +   + G E   ++L
Sbjct: 558  EVVKGTINRVLDSGRVIVSLAEGIT-GIVDELHLSDIKLKHP---EKKFREGIEVKARVL 613

Query: 729  VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            + D     ++L+ K +++NS   + S        +   G +  I+ +G  V+F   + GF
Sbjct: 614  LTDPSKRKVMLTLKKAIVNSDAPIISSYEDTSSGTRSVGTLVKILPSGAVVKFFSDVCGF 673

Query: 789  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 848
             P S+  +    D  + + VGQSV  ++L V+    ++ +S +          F + H  
Sbjct: 674  LPISEMSEAYIQDPHEHFTVGQSVNVHVLSVDPTNQKLRVSCRDPNL------FGEVH-- 725

Query: 849  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE--SNDFGVVVSFEEHSDVYGFITH 906
               K+A+ +                 G V+ G V E  ++D  V ++      + G +  
Sbjct: 726  ---KVALAK--------------LPPGDVVSGTVVEKSADDLIVEINGLGAEGIRGVLVI 768

Query: 907  HQLAGATVE----------SGSVIQAA-ILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
             QL   + E          +G  +    +L+  +  R + LS+K   +          +A
Sbjct: 769  GQLTDGSREKSLGVFKKLRAGQKLDGLLVLEKHEERRSITLSMKPSLV----------KA 818

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQF 1015
             K+ R     +D+   + V   V     + L +        + Y        Q  P   F
Sbjct: 819  AKRGRMISKFEDVNEGERVKGWVRNTTLHGLFVGFAGGIVGVVYKRDLPAEVQSLPNFGF 878

Query: 1016 LNGQSVIATVMALPSSSTAGRLLL-------LLKAISETETSSSK--------RAKKKSS 1060
            +  QS+   V+ +  S    RL L        + A++ T  +S +        R K    
Sbjct: 879  VKNQSITGRVVYIDPSERRFRLSLNSAKSEEKVSAVANTAGNSERLTVNPVDARFKLIDD 938

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVT 1118
            Y  G L +A++  I+  +L +K      GRI ++ V +  D     ++  + FK G  + 
Sbjct: 939  YTPGKLTKAKVVSIQETQLNVKLADNVQGRIDVSLVFETWDAIKDKKSPLALFKKGDVLD 998

Query: 1119 ARII-----------AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1167
            A++I           A +++    K+ ++ELS KPS +    I   +   E D++     
Sbjct: 999  AKVIGIHDARNHRFLAITHQKSNTKTPIFELSAKPSHIKEEGIEGCITKLE-DITPNSTW 1057

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
              ++  +  E A   I   ++ ++ ILD +   ++L+  Q+ F +G A+   VL ++ E 
Sbjct: 1058 VTFLNNISEECAWANIMPDIRGRIRILDLSDNVAQLKTLQKSFPVGCALKCQVLRVDSEH 1117

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
              L L  R      S  +  ++ D +     +G +V GR++K+      ++VQI   + G
Sbjct: 1118 SKLDLSAR------SPSSSALTFDKLA----KGMVVPGRVTKVTDR--QVLVQISESVSG 1165

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1347
             +  T+L +       +GY + + ++  +++I    +    V LS R S   +S      
Sbjct: 1166 PISLTDLADDFSQANTNGYSKNEVIRVCIIDIDSPNK---RVTLSARPSRVMIS------ 1216

Query: 1348 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1407
               D+      ++ I ++    I +G+VK V+ KG F+ +   + A   +S+LSDG+++ 
Sbjct: 1217 ---DLPVKDPEIQAIVNVKVGDIRRGFVKQVSPKGLFVTIGGNVTAWTKISDLSDGFLKE 1273

Query: 1408 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1467
             E  F +G+LV G++++V+     V+++L+ SD     + +  + S+L  G IV G++K 
Sbjct: 1274 WEGLFTVGQLVKGKIMAVDSTLGHVQMSLRESDISGKEKPKPADYSSLKEGQIVKGKVKN 1333

Query: 1468 VESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
            +  YG+FI+++ + N+ GLCH S++++  +D+I  +Y  G+ VK KI+ +D EK+RIS G
Sbjct: 1334 IAEYGVFISVDGSQNISGLCHKSQIADSAIDDISKLYATGDPVKAKIISIDLEKKRISFG 1393

Query: 1527 MKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLA 1586
            +KSSYFK++       SE+ES++  E  G  + S++     +   D D ES+        
Sbjct: 1394 LKSSYFKDEV------SEDESEDGSESEGGADLSAVKVCLGLFWIDADGESD-------- 1439

Query: 1587 QIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTI--------DEKNNRHAKKKEK 1638
            + E     P +E+N      D       + G  D + +I        D + + ++++++ 
Sbjct: 1440 EREQEQEEPSVEMN------DAPTSEGLSTGGFDWSASILDKRGPDTDSEGDSNSEEEKH 1493

Query: 1639 EEREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1695
            ++++++    +E L    A R P    +FERL+   PN S +WI YM+F L +++VEKAR
Sbjct: 1494 KKKKRKKAQIKEDLTGNLATREPQSVADFERLLLGDPNDSKLWIMYMSFELQLSEVEKAR 1553

Query: 1696 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1755
             IAERA++TI +REE+EK N+W+A  N+E+ YG   +E + + F+RA QY + + +H  L
Sbjct: 1554 GIAERAIKTIALREESEKQNVWIAMLNMESMYGT--DETLEEAFKRACQYNEAQGMHEKL 1611

Query: 1756 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL--KQQQEGVQAVVQRALLSLP 1813
              +Y +T + + AD+L   MIKKF    K+W+     LL  KQ  +  +A++QRA+ +LP
Sbjct: 1612 ASIYIQTSKTEKADDLFKVMIKKFSQDPKIWVNYADFLLSSKQSCDAARALLQRAMQALP 1671

Query: 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL--- 1870
            + +H   IS+ A LEF++G  +RGR++FE +L+ + K++DL++++LD EI+ G  +    
Sbjct: 1672 QSQHKDLISKFAKLEFRSGDPERGRTLFENLLATFKKKSDLYNMFLDMEIKYGSEEEDGK 1731

Query: 1871 --IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
              +R LF+RA++     ++ K LFKK+LE+EKS G+++  E V +KA EYVE+
Sbjct: 1732 EGVRALFKRALAEKTSTRQAKALFKKWLEFEKSKGDKKSTETVTRKAKEYVEA 1784



 Score =  230 bits (586), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 341/1477 (23%), Positives = 628/1477 (42%), Gaps = 187/1477 (12%)

Query: 3    ASSRKSQKKSSKDGPKFNKAS--KNQFKNSKKQINDAVEAQDLALPPD--------DDVP 52
             S +K ++    D  + NK+   KN    +K+   +A  A     PP         D+  
Sbjct: 2    GSEKKRKRPQDADPRRANKSETKKNPATANKRLKPEASTAASKFEPPKLSTFCSSKDEET 61

Query: 53   VFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSL 110
             FPRGGG  LT  E  +I   A  D  FEA E    K  KKK  + E K ++      S 
Sbjct: 62   SFPRGGGSVLTPLEFKQISNDAAKDVLFEA-ENAKAKSTKKKPMREELKKDKKSKRDESK 120

Query: 111  FGD--GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAAD 165
             G+  GI       A  ++ K +  G  + G ++++N+ DL + LP  L G   L   ++
Sbjct: 121  KGEQKGIK------AEGLSYKRLVPGTLVLGCISQINQTDLALSLPNNLTGFVPLTSISE 174

Query: 166  ALDPILDNEI--------------------EANEDNL-LPTIFHVGQLVSCIVL---QLD 201
            +L+  ++  +                    E++ED++ L  +F +GQ +   V+   +L 
Sbjct: 175  SLNKRVEALVRDSDDDEDEDVEEKIGTAKSESSEDDVDLKAMFQIGQYLRAYVVSSSELA 234

Query: 202  DDKKEIG----KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS- 256
            + K   G    K++I LSL   +   GL+   +  G  + A V S+EDHG +++ G+ + 
Sbjct: 235  NSKSPSGSKKIKKRIELSLDPVMANNGLTTTELVVGCTVQASVTSVEDHGLVMNLGIGND 294

Query: 257  FTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPD---------TVSKC 306
              GFL    L +   + D K G ++      +    K+V LS D +         +  K 
Sbjct: 295  LKGFLSSKELGKGRSVTDAKEGQVMLCTTIGLSSNGKIVKLSGDLEQKPSKKGKYSGGKA 354

Query: 307  VTKDLKGISIDLLVPGMMVSTRVQSILEN----GVMLSFLTYFTGTVDIFHLQNTFPTTN 362
                    ++D  +PG  V   +  I +     G++   +     T+D FH    +   +
Sbjct: 355  AWWLSSAPTVDTFLPGTGVEVLITDIAKGSKAVGIVGKVMGLVDATMDFFHASG-WREKD 413

Query: 363  WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVV 417
             ++ +   +K+ AR++        + L++ P++L         P + +    I + +K++
Sbjct: 414  IESKFKVGEKIKARVIATYAEPHKLALSILPHVLSFTRPIENEPTTILPTSTIINSAKIL 473

Query: 418  RVDRGLGLLLDIPSTPVSTPAYVTISDVAE----EEVRKLEKKYKEGSCVRVRILGFRHL 473
             ++   GL LD+    V  P +V IS V+     E + K    ++ GS    RI+G+  +
Sbjct: 474  NIEPKTGLSLDVGVPGV--PGFVHISRVSSDSRIEVLSKDSGLHQTGSVHMARIIGYNSM 531

Query: 474  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMS 532
            +GL    ++    +       D+K G VVKG +  V DS   IV    G+  +    H+S
Sbjct: 532  DGLYLVSMEQKVLDQPFLRVEDIKIGEVVKGTINRVLDSGRVIVSLAEGITGIVDELHLS 591

Query: 533  EFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
            + ++  P KKF+ G E+  RVL      +++ +T KK +V S   I+SSY + +    + 
Sbjct: 592  DIKLKHPEKKFREGIEVKARVLLTDPSKRKVMLTLKKAIVNSDAPIISSYEDTSSGTRSV 651

Query: 591  GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
            G + KI   G  V+F++ V GF P SE+      +P   + VGQ V   ++S  P ++++
Sbjct: 652  GTLVKILPSGAVVKFFSDVCGFLPISEMSEAYIQDPHEHFTVGQSVNVHVLSVDPTNQKL 711

Query: 651  NLSFMMKPTRVSEDDLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYS--KGTIPTEH 703
             +S    P    E   V L     G +VSG V   + + ++V +   G    +G +    
Sbjct: 712  RVS-CRDPNLFGEVHKVALAKLPPGDVVSGTVVEKSADDLIVEINGLGAEGIRGVLVIGQ 770

Query: 704  LAD-HLEHATVMKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQ--QLPSDASH 758
            L D   E +  +   ++ G + D LLVL+   E  ++ LS K SL+ +A+  ++ S    
Sbjct: 771  LTDGSREKSLGVFKKLRAGQKLDGLLVLEKHEERRSITLSMKPSLVKAAKRGRMISKFED 830

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV-GQSVRSNIL 817
            ++    V G+V N    G FV F G + G   + + +  +   L    +V  QS+   ++
Sbjct: 831  VNEGERVKGWVRNTTLHGLFVGFAGGIVGVVYK-RDLPAEVQSLPNFGFVKNQSITGRVV 889

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL---------KW 868
             ++    R  LSL  +                EEK++ + ++  N   L         K 
Sbjct: 890  YIDPSERRFRLSLNSAKS--------------EEKVSAVANTAGNSERLTVNPVDARFKL 935

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHS----------DVYGFITHHQLAGATVESGS 918
            ++ +  G + + KV    +  + V   ++           + +  I   +   A  + G 
Sbjct: 936  IDDYTPGKLTKAKVVSIQETQLNVKLADNVQGRIDVSLVFETWDAIKDKKSPLALFKKGD 995

Query: 919  VIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            V+ A ++ +  A+  R + ++         +++N+     +   K    K+ G+   +  
Sbjct: 996  VLDAKVIGIHDARNHRFLAIT--------HQKSNTKTPIFELSAKPSHIKEEGIEGCITK 1047

Query: 977  IVEIVKENYLVLSLPEYNHSIGYASV-------------SDYNTQ-KFPQKQFLNGQSVI 1022
            + +I   +  V  L   +    +A++             SD   Q K  QK F  G ++ 
Sbjct: 1048 LEDITPNSTWVTFLNNISEECAWANIMPDIRGRIRILDLSDNVAQLKTLQKSFPVGCALK 1107

Query: 1023 ATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLK 1082
              V+ + S  +  +L L  ++ S +  +  K AK       G +V   +T++   ++ ++
Sbjct: 1108 CQVLRVDSEHS--KLDLSARSPSSSALTFDKLAK-------GMVVPGRVTKVTDRQVLVQ 1158

Query: 1083 FGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKP 1142
                  G I +T++ DD S    N +S  ++ +     I    + P+ + +    LS +P
Sbjct: 1159 ISESVSGPISLTDLADDFSQANTNGYSKNEVIRVCIIDI----DSPNKRVT----LSARP 1210

Query: 1143 SMLTVSEIGSK--LLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP 1200
            S + +S++  K   +    +V +G    G+V +V  +   +TI  ++ A   I D     
Sbjct: 1211 SRVMISDLPVKDPEIQAIVNVKVGDIRRGFVKQVSPKGLFVTIGGNVTAWTKISD--LSD 1268

Query: 1201 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG 1260
              L+E++  F +G+ V G +++++     +++ LR  +  IS K      D   + + EG
Sbjct: 1269 GFLKEWEGLFTVGQLVKGKIMAVDSTLGHVQMSLR--ESDISGKEKPKPAD--YSSLKEG 1324

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV---- 1316
             IV G++  I      + V    ++ G  H +++ +  + D    Y  G  VK K+    
Sbjct: 1325 QIVKGKVKNIAEYGVFISVDGSQNISGLCHKSQIADSAIDDISKLYATGDPVKAKIISID 1384

Query: 1317 LEISRTVRGT----FHVELSLRSSLDGMSSTNSSDLS 1349
            LE  R   G     F  E+S   S DG  S   +DLS
Sbjct: 1385 LEKKRISFGLKSSYFKDEVSEDESEDGSESEGGADLS 1421


>gi|426253041|ref|XP_004020210.1| PREDICTED: protein RRP5 homolog [Ovis aries]
          Length = 1873

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 411/1469 (27%), Positives = 683/1469 (46%), Gaps = 167/1469 (11%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG     + E+    +       ++  E E+ +R   KK +K   KT++   ET + 
Sbjct: 8    FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKR---KKTQKGPAKTKKVKVETRE- 63

Query: 107  LGSLFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
                     S K  R   +I  ++++  GM++ G V EVNE +LVI LP GL+G  +  +
Sbjct: 64   ---------SSKFVREKFEILNVESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTE 114

Query: 166  ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
              D   +  NE  A E+ L     LP +F  G LV C+V  LD  K   GK+ + LSL  
Sbjct: 115  ICDAYTEKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTK--WGKKNVMLSLNP 172

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + + LS ET++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 173  KNVNRVLSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAR 232

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  ++  +  +  VV LS     VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 233  LKVGQYLNCLIEEVKGSGGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVT 292

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              G+ L FL++F+G VD  HL      T + N     ++V A +L V P +RAV L+L P
Sbjct: 293  PLGLTLKFLSFFSGLVDFMHLDPKRAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRP 347

Query: 394  YLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
              L    P + +   ++G + D   V       G    +    +   AY   + ++  + 
Sbjct: 348  IFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGNAGATFKLKDGAL---AYARRNHLSNSKK 404

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKGKV+ + 
Sbjct: 405  TFKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIK 464

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
              G +V+    ++ L P  H+++  I  P KK+ VG E+  RVL    K+K++ +T KKT
Sbjct: 465  PHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKT 524

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+SKL  ++ Y +A   L THG+I +++++GC V+FYN VQG  PR EL  +   +P S
Sbjct: 525  LVESKLPAITCYDDAKPGLQTHGFILRVKEYGCIVKFYNDVQGLVPRHELSAEYVPDPES 584

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDDLVKLGSLVSG--VVDV----V 680
            +++ GQVVK  +++  P+  R+ LSF +   P +  E    K    VS   +VDV     
Sbjct: 585  VFYTGQVVKVAVLNCEPSKERMLLSFRLLSDPKQECEGQSQKKKKAVSAGQLVDVKILEK 644

Query: 681  TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
            T + + V V+      G +PT HL+DH+ +  ++   ++ G    ++L L      +LL 
Sbjct: 645  TKDGLKVAVLPHNIP-GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSASEERVLLC 703

Query: 741  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
             K +L+++ +  Q P   S IHP  ++ G+V NI + G F++F   L+G AP++   D  
Sbjct: 704  RKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFIQFPSGLSGLAPKAILSDKF 763

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAM 855
                S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +          LEE+  +
Sbjct: 764  VTSTSDHFVEGQTVVAKVTNVDKEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 823

Query: 856  LQ-SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAG 911
                S  +   ++ +     G  ++ +V E  + G V+ F E   V G +   + +  AG
Sbjct: 824  RSLMSNQDSVLIQTLAEMTPGMALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAG 881

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              +E G   +A IL+V   +  V +SL    +        NR+A+K K+  +        
Sbjct: 882  QELEPGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSD-------- 925

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
              + AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+     
Sbjct: 926  --LQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEP 983

Query: 1031 SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 1071
              T   LLL ++  +   T    R                     KK +  +G +V   +
Sbjct: 984  GVTG--LLLAVEGPAAKRTMRQARKDSETVDEDEEVDPALVIGTVKKHTLSIGDMVTGTV 1041

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              IKP  + +    G  G IH + + DD   V  +  +  K+G+ VTAR+I      DMK
Sbjct: 1042 KSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMK 1097

Query: 1132 K-SFL-----------WELSIKPSML-----TVSEIGSKLLFEEC-DVSIGQRVTGYV-- 1171
               FL            ELS++PS L     T     S    E+      GQ VT ++  
Sbjct: 1098 TFKFLPISHPRFIRTIPELSVRPSELKEDGHTALNTHSVSPLEKIKQYQAGQTVTCFLKK 1157

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS-INKEKKLL 1230
            Y +  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+   +  K  L
Sbjct: 1158 YNMVKKWLEVEIAPDVRGRIPLLLTSLSFKVLKHPDKKFQIGQALKATVVGPADSSKAFL 1217

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
             L L             I    ++    +G++  GR+ K+ +   GL V       GRV 
Sbjct: 1218 SLSL-------------IGPHKLK----KGEVAMGRVVKV-TPKEGLTVSFPFGRVGRVS 1259

Query: 1291 FTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1350
               + +      L  +   Q V+C VL  +  V     + LSLRS     S TN    S 
Sbjct: 1260 MFHVSDSYSETRLEDFAPQQIVRCYVLSAASPV-----LTLSLRS-----SRTNPETKSK 1309

Query: 1351 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVESP 1408
              D     +  I+DL    +++G+VK+V   G  + L   +       ++S  +    +P
Sbjct: 1310 ITDP---EINSIKDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLAQHPHVSQHNQSKNAP 1366

Query: 1409 -EKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             ++  P GKL+  +VL +      VE++L
Sbjct: 1367 YDRHLPEGKLLTAKVLRLNHQESLVELSL 1395



 Score =  263 bits (671), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/305 (49%), Positives = 213/305 (69%), Gaps = 11/305 (3%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERL--LEK---DAPRTPD---EFERLVRSSPNSSFV 1677
            DEK  +  KKK K+ERE E + AE+ L  LE+   D  R P+   +F+RLV SSP+SS +
Sbjct: 1565 DEKPEQATKKKSKKERELEKQKAEKELSRLEEALMDPGRQPESAEDFDRLVLSSPSSSLL 1624

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1625 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1682

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1796
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1683 VFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRG 1742

Query: 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            + E    V+QRAL  LP+ +H+  I++ A LEF+ G A+R R++FE  LS YPKRTD+WS
Sbjct: 1743 KAEACHHVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTDVWS 1802

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +Y+D  I+ G     R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1803 VYIDMIIKHGSQKEARDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKAL 1862

Query: 1917 EYVES 1921
            EYVE+
Sbjct: 1863 EYVEA 1867



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1480
              +P +K++ +TLK    +T  +S++  ++   +   G    G I RV+ YG  +   N 
Sbjct: 509  LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKEYGCIVKFYN- 563

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            ++ GL    ELS ++V + E+++  G+ VKV +L  +  K R+ L  +
Sbjct: 564  DVQGLVPRHELSAEYVPDPESVFYTGQVVKVAVLNCEPSKERMLLSFR 611



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 157/384 (40%), Gaps = 44/384 (11%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 453  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1179
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V     
Sbjct: 509  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKEYGC 557

Query: 1180 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            ++     ++  +    L + Y P      +  F+ G+ V   VL+    K+ + L  R  
Sbjct: 558  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVAVLNCEPSKERMLLSFRLL 613

Query: 1238 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELKN 1296
             D    +  +  +   +  +  G +V  +I  +     GL V + PH + G +    L +
Sbjct: 614  SD--PKQECEGQSQKKKKAVSAGQLVDVKI--LEKTKDGLKVAVLPHNIPGFLPTAHLSD 669

Query: 1297 ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1356
               + PL             L        T H  L L +S + +       L + V+  G
Sbjct: 670  HVTNGPL-------------LYHWLQTGDTLHRVLCLSASEERVLLCRKPALVSAVEG-G 715

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            ++ +   ++ P M++ G+VKN+   G FI     L      + LSD +V S    F  G+
Sbjct: 716  QNPKSFSEIHPGMLLIGFVKNIKDYGVFIQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQ 775

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSD 1440
             V  +V +V+   +R+ ++L+ SD
Sbjct: 776  TVVAKVTNVDKEKQRMLLSLRLSD 799



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 168/436 (38%), Gaps = 64/436 (14%)

Query: 1111 FKIGQTVTARIIAKSNKPDM----------KKSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
            FK G T   RII  S   ++          +  FLW   IKP  L   ++          
Sbjct: 411  FKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKV---------- 460

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
              +  +  G V K+  +   L  + HL A + I +           ++++H+G  V   V
Sbjct: 461  --LTIKPHGMVVKMGKQIRGLVPTMHL-ADILIKNP----------EKKYHVGDEVKCRV 507

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
            L  + + K L + L+          +   +D        G I+  R+ +      G +V+
Sbjct: 508  LLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFIL--RVKEY-----GCIVK 560

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1340
                + G V   EL    V DP S +  GQ VK  VL    +        LS R   D  
Sbjct: 561  FYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVAVLNCEPSKERML---LSFRLLSDPK 617

Query: 1341 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSN 1399
                           G+  +K + +S   +V   +   T  G  + +L   +   +  ++
Sbjct: 618  QECE-----------GQSQKKKKAVSAGQLVDVKILEKTKDGLKVAVLPHNIPGFLPTAH 666

Query: 1400 LSDGYVESPEKEFPIGKLVAG----RVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSN 1454
            LSD     P        L  G    RVL +    +RV +  K +  S         + S 
Sbjct: 667  LSDHVTNGP---LLYHWLQTGDTLHRVLCLSASEERVLLCRKPALVSAVEGGQNPKSFSE 723

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
            +H G ++IG +K ++ YG+FI    + L GL   + LS+  V +    +  G+ V  K+ 
Sbjct: 724  IHPGMLLIGFVKNIKDYGVFIQFP-SGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVT 782

Query: 1515 KVDKEKRRISLGMKSS 1530
             VDKEK+R+ L ++ S
Sbjct: 783  NVDKEKQRMLLSLRLS 798


>gi|449505853|ref|XP_002193665.2| PREDICTED: protein RRP5 homolog [Taeniopygia guttata]
          Length = 1834

 Score =  432 bits (1110), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 391/1469 (26%), Positives = 687/1469 (46%), Gaps = 154/1469 (10%)

Query: 54   FPRGG-----GHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLG 108
            FPRGG         T + + E     D + E   +   +  K ++K+   KA++TV    
Sbjct: 8    FPRGGIQKKPAKGKTPKPKSERDNLFDVQHEEKSQKRKRSQKDQEKQKRFKADKTVK--- 64

Query: 109  SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAAD 165
            +   D +    P     +T++ +S GM L G + EV++ +L I LP GL G   + + +D
Sbjct: 65   AAVKDNVMNIGP-----LTVEALSEGMLLLGCIKEVSDYELAISLPNGLSGFVPVTQISD 119

Query: 166  ALDPILDNEIEANED----NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
            A   +L  ++   E     N LP IF  G LV CIV  ++  K + G+R + LS+    +
Sbjct: 120  AYSKLLTKQVAQGEVPEELNSLPDIFSPGTLVRCIVTSVE--KSDDGRRSVKLSIDPEKV 177

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKP 276
             KGL+   +  GMVL+  V S+EDHGY++  G+     FLP         A   G D+K 
Sbjct: 178  NKGLNSAALTAGMVLSGSVLSVEDHGYLIDIGIAGTHAFLPHQKAKNYIKAVKKGPDLKI 237

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +    +VV LS D   V+  +  + +  ++  L+PG++V  RVQ +   G
Sbjct: 238  GQNLNCLIVEVKNEGRVVSLSIDRSEVAASIATERQNWTLSNLLPGLVVKARVQKVFPLG 297

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + ++FL+YFTG VD  H   T P  +    Y+  + V A +L V PTSRAV LTL P  L
Sbjct: 298  MKVTFLSYFTGIVDFMH---TDPEKSM--SYSPDQVVKACVLSVHPTSRAVRLTLRPPFL 352

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
            H    P  +   ++G + +++ V    +  G + ++      T A+  +  +++      
Sbjct: 353  HAGGAPRQLPAQRMGAVVEEATVKAFYKQFGAIFELDD---GTLAFARLKHLSKTRKSFK 409

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
               ++EG   + RI+ +  ++ +    LK    E     + D+  G VV+GKV+++   G
Sbjct: 410  PGAFQEGCKHKCRIIAYSLMDEMCIVSLKHQIIEARFLQYQDIHTGDVVQGKVLSLKPIG 469

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
              V+   G++ L P  H+S+  + +P KK+ +G E+  RVL    + K++ +T KK+LV+
Sbjct: 470  MQVKVADGIRGLVPSLHLSDVILKQPEKKYNIGDEVKCRVLECNPEGKKLILTLKKSLVQ 529

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +LS+Y +A   LITHG++    + GC V+FYN V+G  P++ELG +P   P  +++
Sbjct: 530  SKLPVLSNYEDAKPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELGSEPISCPDKVFY 589

Query: 632  VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-----------VKLGSLVSGVVDVV 680
             GQV+K  ++   P   R+ LSF +      ED              ++G +V   +   
Sbjct: 590  EGQVLKVMVLKCEPQQERLLLSFRLSSKPGPEDKWKCTPKEKQEVKYQIGEIVDVRILKK 649

Query: 681  TPNAVVVYVIA-KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
              N + V ++  +      IP  HL+D ++ + ++   ++ G    ++L L  +  +L+L
Sbjct: 650  KDNGLEVSILEDEDNVVAWIPMLHLSDFVDISKLLWHCLREGDVLPRVLYLSAKGEHLIL 709

Query: 740  SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
            S K ++I++ Q+  +  + S I P  ++ GYV N++  G FV F   +TG AP+    D 
Sbjct: 710  SRKSAVISAVQEEKVVRNFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDK 769

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS-----FMQEHFL-LEE 851
               D    + VGQ+V + ++  + E  R+ L+LK S CSS D++      + ++F  L+E
Sbjct: 770  FVTDTKDHFVVGQTVIAKVMSTDEEKQRVLLNLKVSECSSGDSASESFDLLNQYFKELKE 829

Query: 852  KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 911
               +L+  + +  EL  V G  +  V++  V E  D   + S    + +    T + L  
Sbjct: 830  IRDLLRRGEPSICEL--VPGKRVHLVVQ-DVRE--DGSALFSGSPVTGLTVTATRYHLGD 884

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              +  G   +  +L V      V +SL+   +          + + K+R RE S+     
Sbjct: 885  KNIAPGEKRKVLVLHVDALTSEVYVSLREELL----------KQRPKRRLRENSQH---- 930

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
               + +V+ + E++ + SL E            +N T +F  ++   GQ + AT+ A+  
Sbjct: 931  ---SVVVQHITEHFAIASLLETGQLAAVPIACHFNDTFRFDSEKLRVGQKISATLKAV-K 986

Query: 1031 SSTAGRLL---------LLLKAISETETSSSKRAKK-KSSYDVGSLVQAEITEIKPLELR 1080
             +  G LL         + ++  +E+ET+  +     K S   G +V   +  +KP  + 
Sbjct: 987  ENNHGVLLAVQGPAKKNVFVRVRNESETALEEVLPAVKHSLSPGDVVTGTVKSVKPTHVT 1046

Query: 1081 LKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN----------KPDM 1130
            +       G IH + + D+   +     S  + GQ VTAR+I   +           P  
Sbjct: 1047 VAIDDKLTGSIHASRILDE-VPIGSFPTSTLQAGQKVTARVIGGRDVNTHRCLPITHPHF 1105

Query: 1131 KKSFLWELSIKPS--------MLTVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWAL 1180
             +S + ELSI+PS        ML + E  S  L +    ++GQ VT +V  Y +   W  
Sbjct: 1106 TQS-IPELSIRPSEQEGEFTAMLNLKEESS--LKQLGLYNVGQTVTCFVKKYNMLKNWLE 1162

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
            + ++  ++ ++  L  +     L+  ++ F  G+A++  V   +  ++ L L L   Q  
Sbjct: 1163 VEVAPDIRGRVPHLLLSLSTKVLKHPEKSFKNGQAISATVTGTDATERNLCLSLTGIQS- 1221

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
                            + +  I  G ++K+   V GL + +     G+V    L +    
Sbjct: 1222 ----------------LEQDTISVGMVTKVTPHV-GLTIALPGGKTGKVSIFHLNDTYTD 1264

Query: 1301 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS-LDGMSSTNSSDLSTDVDTPGKHL 1359
            +PL  +  G+ V+C +L I         ++LSLR S L+   ++   D+          +
Sbjct: 1265 NPLGNFKVGKIVRCYILSIENG-----KIQLSLRQSRLNPKINSKVEDI---------EI 1310

Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGK 1416
              I+D+    +V+GYVK++T  G F  LS  L  ++L  N+S  +V+     +K  P GK
Sbjct: 1311 TSIKDVKKGQLVRGYVKSITPSGVFFGLSTSLLGRILFQNVSPYFVQKHSLYKKYLPEGK 1370

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
            L+  +VL V    K +E++L   D+   S
Sbjct: 1371 LLTAKVLGVNRKEKHIELSLLPEDTGMPS 1399



 Score =  279 bits (714), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 186/265 (70%), Gaps = 3/265 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P++ D+F+RLV  SPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 1565 PQSADDFDRLVLGSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 1624

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            VA  NLEN YG   EE ++KVF+RA+QY +P KV   L  +Y  +E+ K A+EL + M+K
Sbjct: 1625 VALLNLENMYGT--EETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLK 1682

Query: 1778 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
            +F+    VWL+    LLKQ Q E    +++RAL +LP  +H+  IS+ A LEF +G  + 
Sbjct: 1683 RFRQEKSVWLKYASFLLKQGQAEATHRLLERALKALPTKEHVDVISRFAQLEFHSGDTEH 1742

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
             +++FE  LS YPKRTD+WSIY+D  I+ G    +R +FER I LSL PKKMKF FK+YL
Sbjct: 1743 AKALFESTLSSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFFFKRYL 1802

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVES 1921
            +YEK  G  E +  VK+ A+EYVE+
Sbjct: 1803 DYEKKFGTAESVLAVKRAALEYVET 1827



 Score = 40.8 bits (94), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 1443 TASQSE--INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
            +A Q E  + N S +  G ++ G ++ V  +G+F+      + GL     +S+  V + +
Sbjct: 717  SAVQEEKVVRNFSEIQPGMLLTGYVRNVMPFGVFVEFP-FGVTGLAPKVSMSDKFVTDTK 775

Query: 1501 TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
              +  G+ V  K++  D+EK+R+ L +K S
Sbjct: 776  DHFVVGQTVIAKVMSTDEEKQRVLLNLKVS 805


>gi|338716596|ref|XP_001499541.3| PREDICTED: protein RRP5 homolog [Equus caballus]
          Length = 1870

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 405/1471 (27%), Positives = 682/1471 (46%), Gaps = 163/1471 (11%)

Query: 54   FPRGGGH-------SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG         +  Q    +   ++  E E+ +R  ++K   K KK + +  E+   
Sbjct: 8    FPRGGTRKPHKSDKAFQQSVEQDNLFDISTEQESTKRKKNQKGPAKTKKLKVEKRESSKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F            + ++++++  GM++ G V EVNE +LVI LP GL+G  +  + 
Sbjct: 68   IREKF------------DILSIESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEI 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      +E  A E+ L     LP +F  G LV C+V  L   +K  GK+ + LSL   
Sbjct: 116  CDAYTKKLSEQVAQEEPLKDLARLPELFSPGMLVRCVVSSLSVTEK--GKKNVKLSLNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP----RNNLAENSGIDVK 275
             + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP    +  + +N G  +K
Sbjct: 174  NVNEVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVAGARAFLPLQKAQEYIRQNKGAKLK 233

Query: 276  PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
             G  L  ++  +  +  VV LS     VS  +  +    +++ L+PG++V  +VQ +   
Sbjct: 234  VGQYLNCIIEEVKGSGGVVSLSIGHSEVSTAIATEEHNWTLNNLLPGLVVKAQVQKVTPL 293

Query: 336  GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
            G+ L+FL++FTG VD  HL    P    K  Y  ++ V A +L V P +RAV L+L P  
Sbjct: 294  GLTLNFLSFFTGLVDFMHLD---PKKAGK--YFSNQAVRACVLCVHPRTRAVRLSLRPVF 348

Query: 396  LHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
            L    P + +    +G + D   V       G    +    +   AY  +S +++ +   
Sbjct: 349  LQPGRPLTRLSCQHLGAVLDNVPVQGFFSKAGATFRLKDGAL---AYARLSHLSDPKNVF 405

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
              + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKG V+ +  +
Sbjct: 406  NPETFKPGNTHKCRIIDYSQMDELALLSLRTSVIEAQYLRYHDIKPGALVKGTVLTIKPY 465

Query: 513  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLV 570
            G +V+    ++ L P  H+++  +  P KK++ G E+  RVL    +++++ +T KKTLV
Sbjct: 466  GMLVKVGEQIRGLVPPMHLADILMKNPEKKYRTGDEVKCRVLLCDPEARKLMMTLKKTLV 525

Query: 571  KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
            +SKL  ++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  ++
Sbjct: 526  ESKLPAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVF 585

Query: 631  HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--------DDLVKLGSLVSGVVDVVTP 682
            + GQVVK  +++  P+  R+ LSF +      E           V +G L+   V   T 
Sbjct: 586  YAGQVVKVVVLNCEPSKERMLLSFKLLSDSKKECAGHNQKKRRAVNVGQLMDVKVLEKTK 645

Query: 683  NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742
            + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  K
Sbjct: 646  DGLEVAVLPHNIP-AFLPTPHLSDHVANGPLLYHWLQAGDTLHRVLCLSQSERHVLLCRK 704

Query: 743  YSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 800
             +L+++ +  Q P   S IHP  ++ G+V +I + G FV+F   L+G AP++   D    
Sbjct: 705  PALVSTVEGGQDPKSFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVT 764

Query: 801  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAMLQ 857
              S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +          LEE+  +  
Sbjct: 765  STSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRS 824

Query: 858  SSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGAT 913
               +  S L + +     G V++ +V E  + G V+ F E   V G +     +  AG  
Sbjct: 825  LMSNRDSVLIQTLAEMTPGMVLDLEVQEVLEDGSVL-FSE-GPVPGLVLRANRYHRAGQE 882

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +A IL+V   +  V +SL    +        NR+A+K K+  E       HQ 
Sbjct: 883  VESGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSE-------HQ- 926

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 927  --AIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLHVGQGVSLTLKTTEPGV 984

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITE 1073
            T   LLL ++  +   T    R                     KK +  +G +V   +  
Sbjct: 985  TG--LLLAVEGPAAKRTMRQTRKDSEAVDEDEEVDATLVVGTVKKHTLSIGDMVTGTVKS 1042

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK-- 1127
            IKP  + +    G  G IH + + DD         +  K+G+TVTAR+I     K+ K  
Sbjct: 1043 IKPTHVVVTLADGIIGCIHASHILDDVPAGTSPT-AKLKVGKTVTARVIGGRDVKTFKFL 1101

Query: 1128 PDMKKSFLW---ELSIKPSML-----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDN 1176
            P     F+    ELS++PS L     T     S    E+      GQ VT ++  Y V  
Sbjct: 1102 PISHPRFIRTIPELSVRPSELEKDGHTALNTHSVSPLEKIKQYQAGQTVTCFLKKYNVVK 1161

Query: 1177 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
            +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V++ +  K  L L L  
Sbjct: 1162 KWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALKATVVNPDSSKAFLCLSL-- 1219

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
                       I   N++    +G++  GR+ K+ +   GL V       GRV    + +
Sbjct: 1220 -----------IGPHNLE----KGEVAMGRVVKV-TPKKGLTVSFPFGKIGRVSIFHVSD 1263

Query: 1297 ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1356
                 PL  +   + V+C VL  +  V     + LSLRS     S TN    S   D   
Sbjct: 1264 SYSETPLEDFTPQKVVRCYVLSTAGHV-----LTLSLRS-----SRTNPETKSKIADP-- 1311

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP------EK 1410
              +  ++D+    +++GYVK+V   G    L   +   V L+        SP       +
Sbjct: 1312 -EINSLKDIREGQLLRGYVKSVQPHGVLFGLGPSV---VGLAQYPHVSQYSPTEKALYNR 1367

Query: 1411 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
              P GKL+  +VLS+      VE++    D+
Sbjct: 1368 HLPEGKLLTAKVLSLNHQKNLVELSFLPGDT 1398



 Score =  281 bits (718), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 139/285 (48%), Positives = 202/285 (70%), Gaps = 4/285 (1%)

Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1581 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1640

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1641 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1698

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1816
            +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +
Sbjct: 1699 IYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPVKE 1758

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
            H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1759 HVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMIIKHGSQKEVRDIFE 1818

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1819 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1863



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 149/324 (45%), Gaps = 36/324 (11%)

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
            ++   +AV   VL ++   + +RL LRP           +S  ++   +    + G    
Sbjct: 319  KYFSNQAVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLSCQHLGAVLDNVPVQG---- 374

Query: 1269 KILSGVGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGT 1326
               S  G    ++ G   Y R+ H ++ KN  V +P + +  G   KC++++ S+     
Sbjct: 375  -FFSKAGATFRLKDGALAYARLSHLSDPKN--VFNPET-FKPGNTHKCRIIDYSQMDELA 430

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1386
                LSLR+S+                   ++L +  D+ P  +V+G V  +   G  + 
Sbjct: 431  L---LSLRTSV----------------IEAQYL-RYHDIKPGALVKGTVLTIKPYGMLVK 470

Query: 1387 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTA 1444
            +  ++   V   +L+D  +++PEK++  G  V  RVL  +P ++++ +TLK +  +S+  
Sbjct: 471  VGEQIRGLVPPMHLADILMKNPEKKYRTGDEVKCRVLLCDPEARKLMMTLKKTLVESKLP 530

Query: 1445 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N ++ GL    ELS ++V + E ++ 
Sbjct: 531  A---ITCYADAKPGLQTHGFILRVKDYGCIVKFYN-DVQGLVPKHELSAEYVPDPERVFY 586

Query: 1505 AGEKVKVKILKVDKEKRRISLGMK 1528
            AG+ VKV +L  +  K R+ L  K
Sbjct: 587  AGQVVKVVVLNCEPSKERMLLSFK 610



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 102/246 (41%), Gaps = 35/246 (14%)

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 1064
            +   K P K+F  GQ++ ATV+  P SS A   L L+                  + + G
Sbjct: 1185 FKVLKHPDKKFRIGQALKATVVN-PDSSKAFLCLSLIGP---------------HNLEKG 1228

Query: 1065 SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
             +    + ++ P + L + F  G  GR+ I  V+D  S   E    +F   + V   +++
Sbjct: 1229 EVAMGRVVKVTPKKGLTVSFPFGKIGRVSIFHVSDSYS---ETPLEDFTPQKVVRCYVLS 1285

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1179
             +         +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V     
Sbjct: 1286 TAG-------HVLTLSLRSSR-TNPETKSKIADPEINSLKDIREGQLLRGYVKSVQPHGV 1337

Query: 1180 LLTISRHLK--AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            L  +   +   AQ +   S Y P+E   + R    GK +T  VLS+N +K L+ L   P 
Sbjct: 1338 LFGLGPSVVGLAQ-YPHVSQYSPTEKALYNRHLPEGKLLTAKVLSLNHQKNLVELSFLPG 1396

Query: 1238 QDGISD 1243
              G  D
Sbjct: 1397 DTGKPD 1402



 Score = 44.3 bits (103), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
            + S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V 
Sbjct: 719  SFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVV 777

Query: 1511 VKILKVDKEKRRISLGMKSS 1530
             K+  VD+EK+R+ L ++ S
Sbjct: 778  AKVTNVDEEKQRMLLSLRLS 797


>gi|395828464|ref|XP_003787398.1| PREDICTED: protein RRP5 homolog [Otolemur garnettii]
          Length = 1870

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 405/1475 (27%), Positives = 688/1475 (46%), Gaps = 169/1475 (11%)

Query: 54   FPRGGGHSLTQRER--------DEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
            FPRGG     + E+        D +  ++  E ++ +R   +K   K K  + K  E++ 
Sbjct: 17   FPRGGTRKTHKSEKALQKSVEQDNLF-DISTEEKSTKRKKGQKEPAKTKTLKIKKRESIK 75

Query: 106  DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
             +   F            + ++++++  GM++ G V EVNE +LVI LP GLRG  +  +
Sbjct: 76   SVREKF------------DILSVESLCEGMRILGCVKEVNELELVISLPNGLRGFVQVTE 123

Query: 166  ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
              D      NE    E+ L     LP +F  G LV C+V  +D  ++  GK+ + LSL  
Sbjct: 124  ICDAYTKKLNEQVTQEEPLKDLLHLPELFSPGMLVRCVVSSVDTTER--GKKSVKLSLNP 181

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + + LS E+++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 182  KNVNRVLSAESLKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLPKAQEYIRQKNKGAK 241

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  V+  +  +  VV L+     VS  +T + +  +++ L+PG++V  +VQ + 
Sbjct: 242  LKVGQYLNCVIEEVKASGGVVSLAIGHAEVSTAITTEEQNWTLNNLLPGLVVKAQVQKVT 301

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
             +G+ L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P
Sbjct: 302  PHGLTLNFLTFFTGLVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRP 356

Query: 394  YLLHNRAPP---SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
             LL    P    S   +G + D   V       G    +      T AY  +S +++ E 
Sbjct: 357  ILLQPGRPLIRLSCQHLGAVLDDVSVQGFFNKAGATFRLKD---GTLAYARLSHLSDSEN 413

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                  +K G+  + RI+ +  ++ LA   L+ +  E     + D+KP  VVKG V+ + 
Sbjct: 414  SFNPDAFKPGNTHKCRIIDYSQMDELALLSLRTAIIEAQYLRYHDIKPAAVVKGTVLTIK 473

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
             +G +V+    ++ L P  H+++  I  P KK+ VG E+  RVL    ++K++ +T KKT
Sbjct: 474  PYGMLVKVGEQIRGLVPAMHLADIPIKNPEKKYHVGDEVKCRVLLCDPEAKKLMMTLKKT 533

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+SKL  ++ Y++    L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  
Sbjct: 534  LVESKLRAIACYSDVKPGLQTHGFIIRVKDYGCIVKFYNDVQGLVPKHELSAEYIPDPER 593

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSEDD--LVKLGSLVSGVVD 678
            +++ GQVVK  +++  P+  R+ LSF +        +PT  S     ++ +G LV   + 
Sbjct: 594  VFYTGQVVKAVVLNCEPSKERMLLSFKLLSDPELQKEPTGHSRKKGRVINIGQLVDVRIS 653

Query: 679  VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
              T + + V V+        +PT HL+DH+ ++ ++   ++PG    ++L L     ++L
Sbjct: 654  EKTKDGLEVTVLPSNIP-AFLPTPHLSDHVANSPLLYHWLQPGDTLHRVLCLSRSEGHVL 712

Query: 739  LSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            L  K +L+++ +  Q P + S IHP  ++ G+V +I + G FV+F   L+G AP++   D
Sbjct: 713  LCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSD 772

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
                  S  +  GQ+V + + +V+ E  R+ LSL+ S C   DA+      LL + +  L
Sbjct: 773  KFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCMLGDAA-TTSLLLLNQCLEEL 831

Query: 857  QSSK-----HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQ 908
            Q  +      +   ++ +     G ++E  V E  + G VV       V G +   + + 
Sbjct: 832  QGVRSLMRNRDSILIQTLAEMTPGMILELVVQEVLEDGSVVF--SGGPVPGLVLRASKYH 889

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
             AG  VESG   +  +L+V   +  V +SL    +        N++A+K K+  E     
Sbjct: 890  RAGQEVESGQKKKVVVLNVDMLKLEVYVSLHQDLV--------NKKAKKLKKGSE----- 936

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMA 1027
              HQ   AIV+ ++E++ V SL +  H   ++  S  N T +F  ++   GQ V  T+  
Sbjct: 937  --HQ---AIVQHLEESFAVASLVDTGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKT 991

Query: 1028 LPSSSTAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAE 1070
                 T   L +   A   T   + K ++                 KK +  +G +V   
Sbjct: 992  TEPGVTGLLLAVEGPAAKRTMRRTQKDSETVDEDEEVDPALAIATIKKHALSIGDMVTGT 1051

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF--SNFKIGQTVTARIIA----K 1124
            +  IKP  + +    G  G IH + + DD   V E     +  ++G+TVTAR+I     K
Sbjct: 1052 VKSIKPTHVVVTLEDGIIGCIHASHILDD---VPEGTCPTAKLQVGKTVTARVIGGRDVK 1108

Query: 1125 SNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEEC--------DVSIGQRVTGYV 1171
            + K  P     F   + ELS++PS L   E G   L                GQ VT ++
Sbjct: 1109 TFKFLPVSHPRFVRTIPELSVRPSEL---EDGHTALNSHSVSPMEKIKQYQAGQTVTCFL 1165

Query: 1172 --YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1229
              Y V  +W  + I+  ++ ++ +L ++     L+   ++F IG+A++  V+  +  K  
Sbjct: 1166 KKYNVVKKWLEVEIAPDVRGRIPLLLTSLSFKVLKHPDKKFRIGQALSATVVGPDSSKAF 1225

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
            + L L             I    ++    +G++  GR++K+     GL+V       GRV
Sbjct: 1226 VCLSL-------------IGPHKLE----KGEVAMGRVAKVTPN-EGLMVSFPFGKMGRV 1267

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
                + +     PL  +   + V+C VL     V     + LSLRS     S TN  +  
Sbjct: 1268 SVFHVSDSYSEMPLEDFIPQKVVRCYVLSTEDEV-----LTLSLRS-----SKTN-PETK 1316

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP- 1408
            + V+ P   +  I D+    +++GYVK++  +G    L   +      S +S   +    
Sbjct: 1317 SRVEDP--EINSIHDVKKGQLLRGYVKSIEPQGVLFGLGPSVVGLAQYSKVSQYSLFKKA 1374

Query: 1409 --EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
               K  P G+L+  ++LSV      VE++   SD+
Sbjct: 1375 LYNKYLPEGRLLTAKILSVNHQKNLVELSFLPSDT 1409



 Score =  282 bits (722), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 138/275 (50%), Positives = 199/275 (72%), Gaps = 4/275 (1%)

Query: 1649 EERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1707
            EE L++ +  P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ 
Sbjct: 1591 EEALMDPRRPPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISF 1650

Query: 1708 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1767
            REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV+L L  +Y ++E+ + 
Sbjct: 1651 REEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVYLHLADIYAKSEKFQE 1708

Query: 1768 ADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAI 1826
            A EL  +M+K+F+    VW++    LL++ Q G    V+QRAL  LPR +HI  I++ A 
Sbjct: 1709 AGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAGASHRVLQRALECLPRKEHIDVIAKFAQ 1768

Query: 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886
            LEF+ G A+R +++FE +LS YPKRTD+WS+Y+D  I+      +R +FER I LSL PK
Sbjct: 1769 LEFQLGDAERAKAIFENMLSIYPKRTDVWSVYIDMTIKHCSQKEVRDIFERVIHLSLAPK 1828

Query: 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            +MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1829 RMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1863



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 156/709 (22%), Positives = 269/709 (37%), Gaps = 105/709 (14%)

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L+  +++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 188  LSAESLKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLPKAQEYIRQKNKGAKL 242

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT---QKFPQKQFLNGQSVIATV 1025
             V Q +N ++E VK +  V+SL     +IG+A VS   T   Q +     L G  V A V
Sbjct: 243  KVGQYLNCVIEEVKASGGVVSL-----AIGHAEVSTAITTEEQNWTLNNLLPGLVVKAQV 297

Query: 1026 MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP----LELRL 1081
              +         L     + +      K+A    +Y     V+A I  + P    + L L
Sbjct: 298  QKVTPHGLTLNFLTFFTGLVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVRLSL 354

Query: 1082 KFGIGFHGRI-------HITEVNDDKSNVVENLFSN------------------------ 1110
            +  +   GR        H+  V DD S  V+  F+                         
Sbjct: 355  RPILLQPGRPLIRLSCQHLGAVLDDVS--VQGFFNKAGATFRLKDGTLAYARLSHLSDSE 412

Query: 1111 -------FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1163
                   FK G T   RII  S   +     L  LS++ +++    +         D+  
Sbjct: 413  NSFNPDAFKPGNTHKCRIIDYSQMDE-----LALLSLRTAIIEAQYLRYH------DIKP 461

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
               V G V  +     L+ +   ++  +  +  A  P  ++  ++++H+G  V   VL  
Sbjct: 462  AAVVKGTVLTIKPYGMLVKVGEQIRGLVPAMHLADIP--IKNPEKKYHVGDEVKCRVLLC 519

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            + E K L + L+        + +   +D        G I+  R+        G +V+   
Sbjct: 520  DPEAKKLMMTLKKTLVESKLRAIACYSDVKPGLQTHGFII--RVKDY-----GCIVKFYN 572

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
             + G V   EL    + DP   +  GQ VK  VL          + E S    L  +S  
Sbjct: 573  DVQGLVPKHELSAEYIPDPERVFYTGQVVKAVVL----------NCEPSKERML--LSFK 620

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSD 1402
              SD     +  G   +K   ++   +V   +   T  G  + +L   + A +   +LSD
Sbjct: 621  LLSDPELQKEPTGHSRKKGRVINIGQLVDVRISEKTKDGLEVTVLPSNIPAFLPTPHLSD 680

Query: 1403 GYVESPEKEFPIGKLVAG----RVLSVEPLSKRVEVTLKTSDSRTASQSE-INNLSNLHV 1457
                SP        L  G    RVL +      V +  K +   T    +   N S +H 
Sbjct: 681  HVANSP---LLYHWLQPGDTLHRVLCLSRSEGHVLLCRKPALVSTVEGGQDPKNFSEIHP 737

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V  K+  VD
Sbjct: 738  GMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVD 796

Query: 1518 KEKRRISLGMK-SSYFKNDADNLQMSSEEESDEAIEEVGSY--NRSSLL 1563
            +EK+R+ L ++ S     DA    +    +  E ++ V S   NR S+L
Sbjct: 797  EEKQRMLLSLRLSDCMLGDAATTSLLLLNQCLEELQGVRSLMRNRDSIL 845



 Score = 43.9 bits (102), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 97/199 (48%), Gaps = 19/199 (9%)

Query: 1370 IVQGYVKNVT-SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
            +  G V  VT ++G  +        +V + ++SD Y E P ++F   K+V   VLS E  
Sbjct: 1241 VAMGRVAKVTPNEGLMVSFPFGKMGRVSVFHVSDSYSEMPLEDFIPQKVVRCYVLSTE-- 1298

Query: 1429 SKRVEVTLKTSDSRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1483
             + + ++L++S +   ++S     EIN++ ++  G ++ G +K +E  G+   +   ++V
Sbjct: 1299 DEVLTLSLRSSKTNPETKSRVEDPEINSIHDVKKGQLLRGYVKSIEPQGVLFGL-GPSVV 1357

Query: 1484 GLCHVSELSEDHVDNIETIYRA----GEKVKVKILKVDKEKRRISLG-MKSSYFKND--- 1535
            GL   S++S+  +   + +Y      G  +  KIL V+ +K  + L  + S   K D   
Sbjct: 1358 GLAQYSKVSQYSLFK-KALYNKYLPEGRLLTAKILSVNHQKNLVELSFLPSDTGKPDVFP 1416

Query: 1536 -ADNLQMSSEEESDEAIEE 1553
             +  L +S +EE     EE
Sbjct: 1417 ASPELPLSKQEERKIEAEE 1435


>gi|259148814|emb|CAY82059.1| Rrp5p [Saccharomyces cerevisiae EC1118]
 gi|323353170|gb|EGA85470.1| Rrp5p [Saccharomyces cerevisiae VL3]
 gi|365763937|gb|EHN05463.1| Rrp5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1729

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 379/1301 (29%), Positives = 624/1301 (47%), Gaps = 178/1301 (13%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   NM T I  GD + GR+ KI      +++ +G  + G    T+  N        
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTGISFITDALNDFSLTLKE 1130

Query: 1305 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1362
             +++     +   VL +    +    +ELSLRS+     S  S                 
Sbjct: 1131 AFEDKINNVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH---------------- 1171

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
            EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +K +   + V G+V
Sbjct: 1172 EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKV 1231

Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFI 1475
            ++ +  S R+ +TL+        +SEIN         S++  GD+  G IK V  +G+F+
Sbjct: 1232 VTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFEGTIKNVTDFGVFV 1282

Query: 1476 TIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
             ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK++ISL +K+S+F  
Sbjct: 1283 KLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLKASHFSK 1342

Query: 1535 DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASV 1594
            +A   +++S   +    +++   +   ++ ++     D D ES+ G              
Sbjct: 1343 EA---ELASTTTTTTTADQLEKEDEDEVMADA--GFNDSDSESDIGDQ------------ 1385

Query: 1595 PPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK----EEREQEIRAAE 1649
                  + D +P+   +G+S + G    A  +D+        +++    E ++ + +  +
Sbjct: 1386 ---NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQEDFTENKKHKHKRRK 1442

Query: 1650 ERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1702
            E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++++EKAR +AERAL
Sbjct: 1443 ENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERAL 1502

Query: 1703 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1762
            +TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D   +H  LLG+YE +
Sbjct: 1503 KTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSYTIHTKLLGIYEIS 1560

Query: 1763 EQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKF 1820
            E+   A EL     KKF      +W+     L+   +E   + ++  AL +LP+  HI+ 
Sbjct: 1561 EKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEV 1620

Query: 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880
            + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D   +  LFER I+
Sbjct: 1621 VRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIIT 1680

Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
              +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1681 KKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  190 bits (482), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 320/1386 (23%), Positives = 595/1386 (42%), Gaps = 188/1386 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALD----PILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALRSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                  RRI  +  +   + ++     +++V   ++++  V   T ++V+V +   G  +
Sbjct: 663  DVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-R 721

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--L 752
            G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A++  L
Sbjct: 722  GVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETL 781

Query: 753  P---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            P    D   ++ +  +H Y+ +I + G FV F G+  G    S AVD +  D+SK +Y+ 
Sbjct: 782  PLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYIN 841

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            QSV   +L  + +  +  LSLK                 +E+ +          S +K  
Sbjct: 842  QSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSW 889

Query: 870  EGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSV 919
            +   IGS+++ K+   + N   V+++   H         D Y  IT  +   +  +   V
Sbjct: 890  DDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDV 949

Query: 920  IQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            I+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + Q +  
Sbjct: 950  IKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTG 1008

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTA 1034
             V     N+L L++ P     I    ++D N   F +    N +SV     AL    ++ 
Sbjct: 1009 FVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASI 1063

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             R    + AI ++    +      S+  VG  +   + +I    + L  G    G   IT
Sbjct: 1064 DREHGFVNAIGKSHVDIN-----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFIT 1118

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
            +  +D S  ++  F + KI   +   +++  + NK         ELS++ +      I S
Sbjct: 1119 DALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS 1170

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
                   D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E+++ +  
Sbjct: 1171 -----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKP 1223

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
             + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I  +  
Sbjct: 1224 MQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD 1277

Query: 1273 GVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
               G+ V++    ++ G  H TE+ +    D  + +  G  VK  VL+ +   +    + 
Sbjct: 1278 --FGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK---QIS 1332

Query: 1331 LSLRSS 1336
            LSL++S
Sbjct: 1333 LSLKAS 1338



 Score = 47.8 bits (112), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 9/156 (5%)

Query: 1375 VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
            + +V+S G  + + + +  A V   ++SD  +  PE++F IG  V GRV+SV      V 
Sbjct: 518  ITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISVNSRG-NVH 576

Query: 1434 VTLKTS-----DSRTASQSEINNLSNL-HVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
            VTLK S     D+     S   N  N+    +  +  ++  +  G  I+     L G   
Sbjct: 577  VTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFG-GLSGFLP 635

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
             SE+SE  V   E   R G+ V VK+L VD ++RRI
Sbjct: 636  NSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRI 671


>gi|349580519|dbj|GAA25679.1| K7_Rrp5p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1729

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 379/1301 (29%), Positives = 624/1301 (47%), Gaps = 178/1301 (13%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVDVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   NM T I  GD + GR+ KI      +++ +G  + G    T+  N        
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTGISFITDALNDFSLTLKE 1130

Query: 1305 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1362
             +++     +   VL +    +    +ELSLRS+     S  S                 
Sbjct: 1131 AFEDKINNVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH---------------- 1171

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
            EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +K +   + V G+V
Sbjct: 1172 EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKV 1231

Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFI 1475
            ++ +  S R+ +TL+        +SEIN         S++  GD+  G I+ V  +G+F+
Sbjct: 1232 VTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFEGTIRNVTDFGVFV 1282

Query: 1476 TIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
             ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK++ISL +K+S+F  
Sbjct: 1283 KLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLKASHFSK 1342

Query: 1535 DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASV 1594
            +A   +++S   +    ++V   +   ++ ++     D D ES+ G              
Sbjct: 1343 EA---ELASTTTTTTTTDQVEKEDEDEVMADA--GFNDSDSESDIGDQ------------ 1385

Query: 1595 PPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK----EEREQEIRAAE 1649
                  + D +P+   +G+S + G    A  +D+        +++    E ++ + +  +
Sbjct: 1386 ---NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQEDFTENKKHKHKRRK 1442

Query: 1650 ERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1702
            E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++++EKAR +AERAL
Sbjct: 1443 ENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERAL 1502

Query: 1703 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1762
            +TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D   +H  LLG+YE +
Sbjct: 1503 KTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSYTIHTKLLGIYEIS 1560

Query: 1763 EQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKF 1820
            E+   A EL     KKF      +W+     L+   +E   + ++  AL +LP+  HI+ 
Sbjct: 1561 EKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEV 1620

Query: 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880
            + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D   +  LFER I+
Sbjct: 1621 VRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIIT 1680

Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
              +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1681 KKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  191 bits (486), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 325/1391 (23%), Positives = 596/1391 (42%), Gaps = 198/1391 (14%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALD----PILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALKSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG----VVDVV--TPNAVVVYVIA 691
                  RRI     +   +VS +   +    + ++V G     VDV+  T ++V+V +  
Sbjct: 663  DVDADRRRI-----IATCKVSNEQAAQQKDTIENIVPGRTIITVDVIEKTKDSVIVEIPD 717

Query: 692  KGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSA 749
             G  +G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A
Sbjct: 718  VGL-RGVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDA 776

Query: 750  QQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
            ++  LP    D   ++ +  +H Y+ +I + G FV F G+  G    S AVD +  D+SK
Sbjct: 777  KKETLPLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISK 836

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
             +Y+ QSV   +L  + +  +  LSLK                 +E+ +          S
Sbjct: 837  AFYINQSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DS 884

Query: 865  ELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATV 914
             +K  +   IGS+++ K+   + N   V+++   H         D Y  IT  +   +  
Sbjct: 885  SIKSWDDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNY 944

Query: 915  ESGSVIQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
            +   VI+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + 
Sbjct: 945  KKDDVIKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIG 1003

Query: 972  QTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP- 1029
            Q +   V     N+L L++ P     I    ++D N   F +    N +SV     AL  
Sbjct: 1004 QELTGFVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQV 1058

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 1089
              ++  R    + AI ++    +      S+  VG  +   + +I    + L  G    G
Sbjct: 1059 KVASIDREHGFVNAIGKSHVDIN-----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTG 1113

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTV 1147
               IT+  +D S  ++  F + KI   +   +++  + NK         ELS++ +    
Sbjct: 1114 ISFITDALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKT 1165

Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1207
              I S       D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E++
Sbjct: 1166 RSIKS-----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWK 1218

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            + +   + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTI 1272

Query: 1268 SKILSGVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRG 1325
              +     G+ V++    ++ G  H TE+ +    D  + +  G  VK  VL+ +   + 
Sbjct: 1273 RNVTD--FGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK- 1329

Query: 1326 TFHVELSLRSS 1336
               + LSL++S
Sbjct: 1330 --QISLSLKAS 1338


>gi|239614080|gb|EEQ91067.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis ER-3]
 gi|327358030|gb|EGE86887.1| rRNA biogenesis protein RRP5 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1811

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 386/1437 (26%), Positives = 688/1437 (47%), Gaps = 195/1437 (13%)

Query: 583  ATDRLITHGWITKIEKH-GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKC 638
            A   +I    +TK+E   G +V+F +   GFA  S L    +D        Y V    + 
Sbjct: 468  AISAIIPEVKVTKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVDSTHEA 527

Query: 639  RIMSSIPASRRINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYV 689
            RI+     S   NL  +    +V +   ++L     G++V G ++  ++  + +  ++  
Sbjct: 528  RIVG---FSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLIVS 584

Query: 690  IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLIN 747
            +A G S G +   H++D  L+H    +   + G +   ++L ++ +   L L+ K SL+N
Sbjct: 585  LADGIS-GLVAGMHMSDTKLQHP---EKKFREGAQVSARILSVNLDKRQLRLTLKKSLLN 640

Query: 748  SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 807
            S      D + I P +   G + +I   G  V+F G + GF P S+  +    D ++ + 
Sbjct: 641  SESPAWKDYNGILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFN 700

Query: 808  VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
            VGQ V  + L+V+ E  ++ +S K       D S   E +    K A             
Sbjct: 701  VGQVVNVHALNVDVELRKLVVSCK-------DPSSFTEAY----KSAF------------ 737

Query: 868  WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI------- 920
              E    G ++ G V E +   +++  E+   V      H   G T  +G  +       
Sbjct: 738  --ENIHPGDIVSGTVFEKSSEDILLKLEDTGLVARLNAEHVADGQTSRNGVALARIRVGQ 795

Query: 921  ---QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
               +  IL++ KA RL+ ++ K           S +QA+++       +DL     V   
Sbjct: 796  KLNELLILNIQKAHRLIKVTNKP----------SLKQARQRGELPARFEDLKEGAKVTGF 845

Query: 978  VEIVKENYLVLSLPEYNHSI-GYAS---VSDYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
            V+ +  + L +   E+   I G+A    V D +  K P   +   Q +  +V ++     
Sbjct: 846  VKNITVDGLFV---EFLGGITGFAPKRLVDDDHVNK-PDFGYFLSQPISLSVESIEDDRQ 901

Query: 1034 AGRLLLLLKAISETETSSS-----------------KRAKKKSSYDVGSLVQAEITEIKP 1076
              R +L +K     + +S                  +  K       G + +A++  +K 
Sbjct: 902  --RFILRMKEQVNKQRASDGVKPANNVNQSSINPIDENIKSLDDLTFGRVTKAKVVSVKE 959

Query: 1077 LELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARII----AKSNK--- 1127
             ++ ++      GRI ++EV D  D     +     FK  Q +  R++    A+S+K   
Sbjct: 960  TQINVQLAENIQGRIDVSEVFDSWDAIKDRKQPLKYFKAKQIIPVRVLGIHDARSHKFLP 1019

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                  K  ++ELS KPS L  +++    L +   V IG    G+V  + ++   + IS 
Sbjct: 1020 ISHRTGKYPVFELSAKPSSLQSTDLEPLSLDK---VKIGSSWVGFVNNIGDDCLWINISP 1076

Query: 1186 HLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----PFQDGI 1241
            +++ +L   D + + S + +  + F +G A+  HV  ++ +K  L L  R    P +  I
Sbjct: 1077 NVRGRLRFTDLSDDLSLVGDIAKNFPVGSALKIHVTGVDADKNRLDLSARHGGLPNRKSI 1136

Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
            SD               +G+I+ G+++++       +VQ+     G ++      I ++D
Sbjct: 1137 SD-------------FSKGEILLGQVTRVTERQA--LVQLSNSTVGAINL-----IDMAD 1176

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
              S  +   F K +V+ +         +++  +  L  +S   S  LS+ +      +  
Sbjct: 1177 DFSKVNPADFHKNEVIRVC-----IIDIDVPNKKIL--LSVRPSRVLSSSLPIQDPEINS 1229

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
            I  L  N IV+G+V+ V + G F+ L   + A + +S+LSD Y++  + EF + +LV GR
Sbjct: 1230 ISQLKVNDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSYLKEWQNEFQVDQLVRGR 1289

Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT- 1480
            ++  +  S +++++LK S      ++ I  + +L  G IV G+++ VE +G FI I+ T 
Sbjct: 1290 IILADAESNKLQMSLKESVLEPNYKTPIT-IKDLKRGQIVTGKVRNVEEFGAFIVIDGTA 1348

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            NL GLCH +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+      
Sbjct: 1349 NLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNKERISLGLKASYFKD------ 1402

Query: 1541 MSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASV------ 1594
             S +E +DE+ ++V   N S   ++       MD+E E G  + +  ++   ++      
Sbjct: 1403 -SDDESNDESADDVSEENMSESEDDGG-----MDLELESGDDISMGGVDMEDAMSDASDE 1456

Query: 1595 ---------PPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEI 1645
                     P ++  L     D +   +   G  +++ +  E +++   KK++  R+ EI
Sbjct: 1457 DVQMAGTEDPAVKGGLVTSGFDWNGNTTTGAGEGNDSGS--ESDDQTVTKKKR--RKPEI 1512

Query: 1646 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1705
            +      L+ + P++  ++ERL+   P+SS +W+KYMAF L +++V+KAR IAERAL++I
Sbjct: 1513 QVDRTGDLDANGPQSIADYERLLLGEPDSSLLWLKYMAFQLELSEVDKAREIAERALRSI 1572

Query: 1706 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1765
            +I ++ EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  L  +Y ++ +N
Sbjct: 1573 SIGQDTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHERLTSIYIQSGKN 1630

Query: 1766 KLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFIS 1822
              ADEL    + KKF  S  ++L     L     + E  +A++ RA+ +LP H H+   S
Sbjct: 1631 DKADELFQATLKKKFTQSPNIYLNFATFLFDTLAEPERARALLPRAIQALPAHTHVDITS 1690

Query: 1823 QTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880
            +   LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI+ G+V+ +R LFER + 
Sbjct: 1691 KFGQLEFRSPNGDIERGRTIFEGLLSSFPKRVDLWNVLLDLEIKSGEVEQVRRLFERVLG 1750

Query: 1881 LS--------------LPPKKMKFLFKKYLEYEKSVGE--EERIEYVKQKAMEYVES 1921
            L               L  K+ KF FKK+L +E+  G+  E+ ++ VK +A EYV++
Sbjct: 1751 LGHGIAADGTKTVSKKLKDKQAKFFFKKWLTFEEKAGDGNEKMVDEVKARAAEYVKA 1807



 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 209/855 (24%), Positives = 359/855 (41%), Gaps = 79/855 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE---AVERGLHKKNKKKKKKTERKA--- 100
           D+ P FPRGG   LT  E+ +I   A  D  FE   A  +G      +K+KK+ + +   
Sbjct: 67  DEEPAFPRGGASVLTPLEQKQIQIQATRDVLFEQKGAPFQGHADDEDEKEKKSSKVSGGK 126

Query: 101 ---------NETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVI 151
                      TV +  +  G  I G        +  K I  G K+ G V+ +N  D+ +
Sbjct: 127 CKKGKTKAKRNTVSEAPAKEGVRIEG--------LNFKRIVIGSKVLGQVSSINAHDIGL 178

Query: 152 CLPGGLRG---LARAADALDPILDNEIEANEDNLLP--------------TIFHVGQLVS 194
            LP  L G   +   +  L   ++N +++N++                  + F +GQ + 
Sbjct: 179 SLPNNLTGYIPITAVSRTLQQKIENLLKSNQEENDNSDDDEEEEEDLDLNSYFKLGQYLR 238

Query: 195 CIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
             VL  + +    K  GK+ I LS+       GLS   +     + A V S+EDHG ++ 
Sbjct: 239 ASVLSTETEVNHGKTKGKKHIRLSVDPREANSGLSKSDLVVNATVQASVLSVEDHGLVMD 298

Query: 252 FGLP--SFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 308
            GL      GF+    +  +  +  +K G +   VV   +    VV LS++  T      
Sbjct: 299 LGLQDGQTKGFMSSKEIPHDLEVSQIKEGSVFLCVVTGHNADGSVVKLSANLPTAGSIKK 358

Query: 309 KDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 366
                   +I+  +PG      +  +   G+    +      VD+     T    +    
Sbjct: 359 SHFLTSAPTINSFLPGTAAEILLTEVTSTGMAGKIMGMLNAVVDLVQSGTTTGKEDITTK 418

Query: 367 YNQHKKVNARILFVDPTSRAVGLTLN---------PYLLHNRAPPSHV-KVGDIYDQSKV 416
           Y+   K+  R++   PT   + L  +         P +L  +        +  I  + KV
Sbjct: 419 YHVGAKIKGRLICTFPTVEPMKLGFSILDHVVKFTPTVLEQKPSSEDTPAISAIIPEVKV 478

Query: 417 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL 476
            +V+ GLG+ +              +SD   + +   +  YK  S    RI+GF  L+ L
Sbjct: 479 TKVEPGLGVYVQFNDKHYGFAHISRLSDNKVDSISATQGPYKVDSTHEARIVGFSALDNL 538

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHM 531
               L+    +       DV  G VV+GK+    I  D   G IV    G+  L    HM
Sbjct: 539 YLLSLERKVIDQPFLRLEDVTVGAVVRGKIEKLLIGTDGISGLIVSLADGISGLVAGMHM 598

Query: 532 SEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
           S+ ++  P KKF+ GA++  R+L V    +++ +T KK+L+ S+      Y        +
Sbjct: 599 SDTKLQHPEKKFREGAQVSARILSVNLDKRQLRLTLKKSLLNSESPAWKDYNGILPGNQS 658

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G I  I+ HG  V+FY  V+GF P SE+      +P+  ++VGQVV    ++     R+
Sbjct: 659 PGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNVGQVVNVHALNVDVELRK 718

Query: 650 INLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
           + +S    P+  +E      + +  G +VSG V   +   +++ +   G     +  EH+
Sbjct: 719 LVVS-CKDPSSFTEAYKSAFENIHPGDIVSGTVFEKSSEDILLKLEDTGLV-ARLNAEHV 776

Query: 705 AD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDASHI 759
           AD       V  + I+ G + ++LL+L+ + ++ L+  + K SL  + Q  +LP+    +
Sbjct: 777 ADGQTSRNGVALARIRVGQKLNELLILNIQKAHRLIKVTNKPSLKQARQRGELPARFEDL 836

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
              + V G+V NI   G FV FLG +TGFAP+    D         Y++ Q +  ++  +
Sbjct: 837 KEGAKVTGFVKNITVDGLFVEFLGGITGFAPKRLVDDDHVNKPDFGYFLSQPISLSVESI 896

Query: 820 NSETGRITLSLKQSC 834
             +  R  L +K+  
Sbjct: 897 EDDRQRFILRMKEQV 911



 Score = 43.9 bits (102), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 156/374 (41%), Gaps = 31/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            ++L  +  G    G V  + +  L I +   +RG  R  D  D + L  +I  N      
Sbjct: 1047 LSLDKVKIGSSWVGFVNNIGDDCLWINISPNVRGRLRFTDLSDDLSLVGDIAKN------ 1100

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F VG  +   V  +D DK      ++ LS R   L    S+    +G +L   V  + 
Sbjct: 1101 --FPVGSALKIHVTGVDADKN-----RLDLSARHGGLPNRKSISDFSKGEILLGQVTRVT 1153

Query: 245  DHGYILHFGLPSFTGFLPRNNLAEN----SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
            +   ++     S  G +   ++A++    +  D     +++  +  ID   K + LS  P
Sbjct: 1154 ERQALVQLS-NSTVGAINLIDMADDFSKVNPADFHKNEVIRVCIIDIDVPNKKILLSVRP 1212

Query: 301  DTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              V  S    +D +  SI  L    +V   V+ +  NG+ ++     T  + I  L +++
Sbjct: 1213 SRVLSSSLPIQDPEINSISQLKVNDIVRGFVRRVANNGLFVTLGHDVTAYIRISDLSDSY 1272

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-NRAPP---SHVKVGDIYDQS 414
                W+N++   + V  RI+  D  S  + ++L   +L  N   P     +K G I    
Sbjct: 1273 -LKEWQNEFQVDQLVRGRIILADAESNKLQMSLKESVLEPNYKTPITIKDLKRGQIV-TG 1330

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR-HL 473
            KV  V+   G  + I  T  +       +++AE +V    K +++G  V+ +I+    + 
Sbjct: 1331 KVRNVEE-FGAFIVIDGT-ANLSGLCHRTEMAEGKVEDARKVFEKGDIVKAKIIKIDLNK 1388

Query: 474  EGLATGILKASAFE 487
            E ++ G LKAS F+
Sbjct: 1389 ERISLG-LKASYFK 1401


>gi|37359824|dbj|BAC97890.1| mKIAA0185 protein [Mus musculus]
          Length = 1866

 Score =  429 bits (1102), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 406/1480 (27%), Positives = 684/1480 (46%), Gaps = 170/1480 (11%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+            +V  E   ++R   +K   K KK + +  +++  
Sbjct: 14   FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 73

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 74   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 121

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 122  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 179

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++ GM+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 180  RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 239

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 240  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 299

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 300  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 354

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 355  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 411

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 412  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 471

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 472  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 531

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL +++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 532  VTSKLPLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 591

Query: 630  YHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL---------VKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF ++  +R  +  +         V++G LV   V  
Sbjct: 592  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 651

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL
Sbjct: 652  KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 710

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D 
Sbjct: 711  CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 770

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
                 S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   
Sbjct: 771  FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 830

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG 
Sbjct: 831  IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 890

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VE G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ
Sbjct: 891  EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KPRKLRKSSR----HQ 935

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
                IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+      
Sbjct: 936  ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 992

Query: 1032 STAGRLLLLLKAIS----------ETETSSSK------------------RAKKKSSYDV 1063
             T   L+L ++  +          ++ET   K                  ++KK+ S  +
Sbjct: 993  VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEKEEENLTVKSKKRHSLAI 1050

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G  V   I  +K   + +    GF G IH + + DD   V  +  +  K G+ VTAR+I 
Sbjct: 1051 GDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARVIG 1109

Query: 1124 ----KSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSI-----GQRVTG 1169
                K++K  P     F   + ELS++PS L  S        E     I     GQ VT 
Sbjct: 1110 GRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTVTC 1169

Query: 1170 YV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
            +   Y V  +W  + I   ++ ++ +L ++     L+   ++F +G+A+   V+  +  +
Sbjct: 1170 FFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDVPR 1229

Query: 1228 KLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
              L L ++ P++                  + EG++  GR+ K++    GL V       
Sbjct: 1230 AFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFGKI 1270

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1346
            G+V    L +     PL  +   + V+C +L  +  V     + LSLRSS     + N  
Sbjct: 1271 GKVSMFHLSDSYSEAPLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKNR- 1324

Query: 1347 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
                 ++ P   +  IED+    +++GYVK V      I L   +      S++S+    
Sbjct: 1325 -----IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV-- 1375

Query: 1407 SPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
             PEKE      P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1376 PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1415



 Score =  280 bits (716), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 138/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)

Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1577 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1636

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1637 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1694

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1816
            +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +
Sbjct: 1695 IYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1754

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
            H+  I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1755 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1814

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1815 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1859



 Score = 68.2 bits (165), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 137/321 (42%), Gaps = 40/321 (12%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 331  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 390

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y RV H ++ K    ++    +  G   KC++++ S+      
Sbjct: 391  RLKDGVLA---------YARVSHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDELAL 438

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR S+              +  P     +  D+    +V+G V  +   G  + +
Sbjct: 439  ---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLAIKPFGILVKV 478

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK +   T+   
Sbjct: 479  GEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLV-TSKLP 537

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
             I        G    G I RV+ YG  +   N ++ GL    ELS  H+ + ET++  G+
Sbjct: 538  LITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIPDPETVFYTGQ 596

Query: 1508 KVKVKILKVDKEKRRISLGMK 1528
             VKV +L  +  K R+ L  +
Sbjct: 597  VVKVAVLSCEPSKERMLLSFR 617



 Score = 40.8 bits (94), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 179/458 (39%), Gaps = 47/458 (10%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
             RLK G+  + R+  + ++D K          FK G T   RII  S   +     L  L
Sbjct: 390  FRLKDGVLAYARV--SHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDE-----LALL 439

Query: 1139 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            S++ S++              D+ IG  V G V  +     L+ +   +K    +     
Sbjct: 440  SLRKSIIAAP------FLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKG--LVPSMHL 491

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
                ++  ++++  G  V   VL  + E K L + L+        KT+  S   + T  +
Sbjct: 492  ADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK--------KTLVTSKLPLIT-CY 542

Query: 1259 EGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            EG   G +   ++  V   G +V+    + G V   EL    + DP + +  GQ VK  V
Sbjct: 543  EGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAV 602

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L    +        LS R     +S +   D   +        +K   +    +V   V 
Sbjct: 603  LSCEPSKERML---LSFRL----LSDSRPKDPGVESSQ-----KKTGAVRIGQLVDVKVL 650

Query: 1377 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVE 1433
              T  G  + +L     A +   +LSD     P        G  +  RVL +    + + 
Sbjct: 651  EKTKTGLEVAILPHNTPAFLPTPHLSDHAANGPLLHHWLQTGDTLH-RVLCLSQSERHIL 709

Query: 1434 VTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            +  K +   T    +   +LS +  G ++IG +K ++ YG+F+    + L GL   + +S
Sbjct: 710  LCRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFP-SGLSGLSPKTIMS 768

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  V      +  G+ V  K+  VD+ K+R+ L ++ S
Sbjct: 769  DKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLS 806


>gi|54607128|ref|NP_035183.2| protein RRP5 homolog [Mus musculus]
 gi|224493305|sp|Q6NS46.2|RRP5_MOUSE RecName: Full=Protein RRP5 homolog; AltName: Full=Apoptosis-linked
            gene 4 protein; AltName: Full=Programmed cell death
            protein 11
          Length = 1862

 Score =  428 bits (1101), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 406/1482 (27%), Positives = 685/1482 (46%), Gaps = 172/1482 (11%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+            +V  E   ++R   +K   K KK + +  +++  
Sbjct: 8    FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 68   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 116  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++ GM+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 174  RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 294  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 349  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 406  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 466  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL++++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 526  VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL---------VKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF ++  +R  +  +         V++G LV   V  
Sbjct: 586  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL
Sbjct: 646  KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D 
Sbjct: 705  CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
                 S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   
Sbjct: 765  FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG 
Sbjct: 825  IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VE G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ
Sbjct: 885  EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
                IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+      
Sbjct: 930  ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 986

Query: 1032 STAGRLLLLLKAIS----------ETETSSSK--------------------RAKKKSSY 1061
             T   L+L ++  +          ++ET   K                    ++KK+ S 
Sbjct: 987  VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSL 1044

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
             +G  V   I  +K   + +    GF G IH + + DD   V  +  +  K G+ VTAR+
Sbjct: 1045 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 1103

Query: 1122 IA----KSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSI-----GQRV 1167
            I     K++K  P     F   + ELS++PS L  S        E     I     GQ V
Sbjct: 1104 IGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTV 1163

Query: 1168 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
            T +   Y V  +W  + I   ++ ++ +L ++     L+   ++F +G+A+   V+  + 
Sbjct: 1164 TCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDV 1223

Query: 1226 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             +  L L ++ P++                  + EG++  GR+ K++    GL V     
Sbjct: 1224 PRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFG 1264

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1344
              G+V    L +     PL  +   + V+C +L  +  V     + LSLRSS     + N
Sbjct: 1265 KIGKVSMFHLSDSYSEAPLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKN 1319

Query: 1345 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1404
                   ++ P   +  IED+    +++GYVK V      I L   +      S++S+  
Sbjct: 1320 R------IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV 1371

Query: 1405 VESPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
               PEKE      P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1372 --PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411



 Score =  280 bits (716), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 138/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)

Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1573 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1632

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1633 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1690

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1816
            +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +
Sbjct: 1691 IYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1750

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
            H+  I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1751 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1810

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1811 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1855



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 138/321 (42%), Gaps = 40/321 (12%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y RV H ++ K    ++    +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARVSHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR S+              +  P     +  D+    +V+G V  +   G  + +
Sbjct: 433  ---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLAIKPFGILVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK +   T+  S
Sbjct: 473  GEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLV-TSKLS 531

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
             I        G    G I RV+ YG  +   N ++ GL    ELS  H+ + ET++  G+
Sbjct: 532  LITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIPDPETVFYTGQ 590

Query: 1508 KVKVKILKVDKEKRRISLGMK 1528
             VKV +L  +  K R+ L  +
Sbjct: 591  VVKVAVLSCEPSKERMLLSFR 611



 Score = 41.6 bits (96), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 180/458 (39%), Gaps = 47/458 (10%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
             RLK G+  + R+  + ++D K          FK G T   RII  S   +     L  L
Sbjct: 384  FRLKDGVLAYARV--SHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDE-----LALL 433

Query: 1139 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            S++ S++              D+ IG  V G V  +     L+ +   +K    +     
Sbjct: 434  SLRKSIIAAP------FLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKG--LVPSMHL 485

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
                ++  ++++  G  V   VL  + E K L + L+        KT+  S  ++ T  +
Sbjct: 486  ADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK--------KTLVTSKLSLIT-CY 536

Query: 1259 EGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            EG   G +   ++  V   G +V+    + G V   EL    + DP + +  GQ VK  V
Sbjct: 537  EGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAV 596

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L    +        LS R     +S +   D   +        +K   +    +V   V 
Sbjct: 597  LSCEPSKERML---LSFRL----LSDSRPKDPGVESSQ-----KKTGAVRIGQLVDVKVL 644

Query: 1377 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVE 1433
              T  G  + +L     A +   +LSD     P        G  +  RVL +    + + 
Sbjct: 645  EKTKTGLEVAILPHNTPAFLPTPHLSDHAANGPLLHHWLQTGDTLH-RVLCLSQSERHIL 703

Query: 1434 VTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            +  K +   T    +   +LS +  G ++IG +K ++ YG+F+    + L GL   + +S
Sbjct: 704  LCRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFP-SGLSGLSPKTIMS 762

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  V      +  G+ V  K+  VD+ K+R+ L ++ S
Sbjct: 763  DKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLS 800


>gi|47124316|gb|AAH70468.1| Programmed cell death 11 [Mus musculus]
          Length = 1862

 Score =  428 bits (1101), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 406/1482 (27%), Positives = 687/1482 (46%), Gaps = 172/1482 (11%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+            +V  E   ++R   +K   K KK + +  +++  
Sbjct: 8    FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 68   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 116  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++ GM+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 174  RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 294  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 349  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 406  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 466  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL++++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 526  VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL---------VKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF ++  +R  +  +         V++G LV   V  
Sbjct: 586  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL
Sbjct: 646  KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D 
Sbjct: 705  CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
                 S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   
Sbjct: 765  FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG 
Sbjct: 825  IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VE G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ
Sbjct: 885  EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
                IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+      
Sbjct: 930  ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 986

Query: 1032 STAGRLLLLLKAIS----------ETETSSSK--------------------RAKKKSSY 1061
             T   L+L ++  +          ++ET   K                    ++KK+ S 
Sbjct: 987  VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSL 1044

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
             +G  V   I  +K   + +    GF G IH + + DD   V  +  +  K G+ VTAR+
Sbjct: 1045 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 1103

Query: 1122 IA----KSNK--PDMKKSF---LWELSIKPSMLTVS----EIGSKLLFEEC-DVSIGQRV 1167
            I     K++K  P     F   + ELS++PS L  S       S+   E+      GQ V
Sbjct: 1104 IGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTV 1163

Query: 1168 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
            T +   Y V  +W  + I   ++ ++ +L ++     L+   ++F +G+A+   V+  + 
Sbjct: 1164 TCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDV 1223

Query: 1226 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             +  L L ++ P++                  + EG++  GR+ K++    GL V     
Sbjct: 1224 PRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFG 1264

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1344
              G+V    L +     PL  +   + V+C +L  +  V     + LSLRSS     + N
Sbjct: 1265 KIGKVSMFHLSDSYSEAPLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKN 1319

Query: 1345 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1404
                   ++ P   +  IED+    +++GYVK V      I L   +      S++S+  
Sbjct: 1320 R------IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV 1371

Query: 1405 VESPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
               PEKE      P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1372 --PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411



 Score =  278 bits (712), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 137/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)

Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            ++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1573 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1632

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1633 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1690

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1816
            +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +
Sbjct: 1691 IYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1750

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
            H+  I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1751 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1810

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA++YVE+
Sbjct: 1811 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALDYVEA 1855



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 138/321 (42%), Gaps = 40/321 (12%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y RV H ++ K    ++    +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARVSHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR S+              +  P     +  D+    +V+G V  +   G  + +
Sbjct: 433  ---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLAIKPFGILVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK +   T+  S
Sbjct: 473  GEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLV-TSKLS 531

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
             I        G    G I RV+ YG  +   N ++ GL    ELS  H+ + ET++  G+
Sbjct: 532  LITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIPDPETVFYTGQ 590

Query: 1508 KVKVKILKVDKEKRRISLGMK 1528
             VKV +L  +  K R+ L  +
Sbjct: 591  VVKVAVLSCEPSKERMLLSFR 611



 Score = 41.6 bits (96), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 180/458 (39%), Gaps = 47/458 (10%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
             RLK G+  + R+  + ++D K          FK G T   RII  S   +     L  L
Sbjct: 384  FRLKDGVLAYARV--SHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDE-----LALL 433

Query: 1139 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            S++ S++              D+ IG  V G V  +     L+ +   +K    +     
Sbjct: 434  SLRKSIIAAP------FLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKG--LVPSMHL 485

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
                ++  ++++  G  V   VL  + E K L + L+        KT+  S  ++ T  +
Sbjct: 486  ADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK--------KTLVTSKLSLIT-CY 536

Query: 1259 EGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            EG   G +   ++  V   G +V+    + G V   EL    + DP + +  GQ VK  V
Sbjct: 537  EGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAV 596

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L    +        LS R     +S +   D   +        +K   +    +V   V 
Sbjct: 597  LSCEPSKERML---LSFRL----LSDSRPKDPGVESSQ-----KKTGAVRIGQLVDVKVL 644

Query: 1377 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVE 1433
              T  G  + +L     A +   +LSD     P        G  +  RVL +    + + 
Sbjct: 645  EKTKTGLEVAILPHNTPAFLPTPHLSDHAANGPLLHHWLQTGDTLH-RVLCLSQSERHIL 703

Query: 1434 VTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            +  K +   T    +   +LS +  G ++IG +K ++ YG+F+    + L GL   + +S
Sbjct: 704  LCRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFP-SGLSGLSPKTIMS 762

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  V      +  G+ V  K+  VD+ K+R+ L ++ S
Sbjct: 763  DKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLS 800


>gi|84040294|gb|AAI11041.1| PDCD11 protein [Homo sapiens]
          Length = 1444

 Score =  428 bits (1100), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 403/1473 (27%), Positives = 682/1473 (46%), Gaps = 165/1473 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K LL L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLT 1222

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+     GL V       G V    +
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHM 1263

Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
             +     PL  +   + V+C +L  +  V     + LSLR      SS  + +  + V+ 
Sbjct: 1264 SDSYSETPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVED 1312

Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--- 1411
            P   +  I+D+    +++GYV ++   G F  L   +      S++S     SP K+   
Sbjct: 1313 P--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQ---HSPSKKALY 1367

Query: 1412 ---FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
                P GKL+  RVL +      VE++    D+
Sbjct: 1368 NKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400



 Score = 76.3 bits (186), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 149/326 (45%), Gaps = 46/326 (14%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +
Sbjct: 433  ---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVLTIKSYGMLVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S
Sbjct: 473  GEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLIES 528

Query: 1448 E---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++ 
Sbjct: 529  KLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFY 587

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ VKV +L  +  K R+ L  K S
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 161/724 (22%), Positives = 274/724 (37%), Gaps = 121/724 (16%)

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 1025
             V Q +N IVE VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIVEKVKGNGGVVSL-----SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQV 288

Query: 1026 MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 1076
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVHLSL 345

Query: 1077 ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 1100
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 1101 SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1158
                 N+F+   FK G T   RII  S   +     L  LS++ S++             
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQ------YLRY 447

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-----QRRFHIG 1213
             D+  G  V G V  + +   L+ +   ++  +        P  L +      ++++HIG
Sbjct: 448  HDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLV-------PPMHLADILMKNPEKKYHIG 500

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
              V   VL  + E K L + L+          +    D        G I+  R+      
Sbjct: 501  DEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFII--RVKDY--- 555

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1333
              G +V+   ++ G V   EL    + DP   +  GQ VK  VL          + E S 
Sbjct: 556  --GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVL----------NCEPSK 603

Query: 1334 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLD 1392
               L  +S   SSD     +  G   +K + ++   +V   V   T  G  + +L   + 
Sbjct: 604  ERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIR 661

Query: 1393 AKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE-I 1449
            A +  S+LSD     P        G ++  RVL +     RV +  K +   T    +  
Sbjct: 662  AFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGRVLLCRKPALVSTVEGGQDP 720

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
             N S +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V
Sbjct: 721  KNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 779

Query: 1510 KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA 1569
              K+  VD+EK+R+ L ++ S       +L ++S    ++ +EE+    RS +    SV 
Sbjct: 780  AAKVTNVDEEKQRMLLSLRLS--DCGLGDLAITSLLLLNQCLEELQGV-RSLMSNRDSVL 836

Query: 1570 VQDM 1573
            +Q +
Sbjct: 837  IQTL 840



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 118/246 (47%), Gaps = 35/246 (14%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G  S+ +  L   +  P K LE+ E      +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKTL-LCLSLTGPHK-LEEGE------VAMGRVVKVTPNEGLTV 1248

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V + ++SD Y E+P ++F   K+V   +LS       + ++L++S +   +
Sbjct: 1249 SFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPET 1306

Query: 1446 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
            +S     EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  + +
Sbjct: 1307 KSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPSKK 1364

Query: 1501 TIYRA----GEKVKVKILKVDKEKRRISLGMKSSYFKNDA---DNL------QMSSEEES 1547
             +Y      G+ +  ++L+++ +K  + L    S+   D    D L      Q++ +EE 
Sbjct: 1365 ALYNKHLPEGKLLTARVLRLNHQKNLVEL----SFLPGDTGKPDVLSASLEGQLTKQEER 1420

Query: 1548 DEAIEE 1553
                EE
Sbjct: 1421 KTEAEE 1426


>gi|156058222|ref|XP_001595034.1| hypothetical protein SS1G_03122 [Sclerotinia sclerotiorum 1980]
 gi|154700910|gb|EDO00649.1| hypothetical protein SS1G_03122 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1789

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 452/1728 (26%), Positives = 774/1728 (44%), Gaps = 204/1728 (11%)

Query: 311  LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI------------------- 351
            ++G+S   LVPG +V  +V  I    + LS     TG V I                   
Sbjct: 140  IEGLSYKRLVPGSLVLGQVSQINATDIALSLPNNLTGYVPITSISDKATERIEAIAAAEE 199

Query: 352  -----------FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA 400
                         L+  F    +   Y      +     +    R + L+L P   +N A
Sbjct: 200  DDVEDELEVQDIDLKKMFSMGQYLRAYVVSTSDDTNTATLGKGKRRIELSLRPQHANN-A 258

Query: 401  PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG 460
              S   + +    + V  V+   GL+++I         ++   D+  E V       +EG
Sbjct: 259  VTSQNLIANTTLMASVTSVEDH-GLIMNIGLEDSGIRGFMGAKDIGHEVVLA---DVQEG 314

Query: 461  SCVRVRILGFRH--------LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
            +     + G            +    G LK S +     T     PG  V+  ++ V S 
Sbjct: 315  AVFLCMVTGLSSNGKTVKLCADTQKIGNLKKSNYLTDAPTVDAFLPGTAVEILIVDVSSR 374

Query: 513  GAIVQFPGGVKALCPLPHMS------EFEIVKPGKKFKVGAELVFRVLGV----KSKRIT 562
            G   +  G V     L H        E E     KKFK+GA++  RV+        +++ 
Sbjct: 375  GVTGKVMGMVDVTADLMHSGTGVMNQELE-----KKFKIGAKVRGRVICTFPNSDPQKLG 429

Query: 563  VT---HKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKH-GCFVRF-YNGVQGF 612
            V+   H  +L   +     +  +  D L     I    I K+E   G FV     G+ GF
Sbjct: 430  VSLLDHVASLSPQQAGKPGNKVDPLDALPLSAIIEEVTIKKVESGVGLFVDVGVKGIPGF 489

Query: 613  APRSELG---LDPGCEPSSMYHVGQVVKCRIMS--SIPASRRINLS-FMMKPTRVSEDDL 666
               S +    ++   E +  Y VG V + R+++  S+     ++L   +++   +  +DL
Sbjct: 490  VHISRVKDGKIETLEETTGPYKVGSVHRGRVLAYNSLDGVYLVSLEKSVLEQAYLRIEDL 549

Query: 667  VKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
             K+G +V G V+ +  NA     ++  +A+  S G +P  HLAD  L H    +   K G
Sbjct: 550  -KVGEVVKGKVEKLIVNANGFGGLLVNLAENIS-GLVPETHLADVQLLHP---EKKFKEG 604

Query: 722  YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
                 ++L  D     + L+ K +L+NS     +    I       G + NI+ TG  V+
Sbjct: 605  MSVTARVLSTDPGKRQIRLTLKKTLVNSESPAFTSYDGIIVGMQSPGTIVNIMNTGAVVQ 664

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F G + GF P S+  +    D S+ + VGQ V  ++L V+ E+ ++T+S K         
Sbjct: 665  FYGNIRGFLPVSEMSEAYIQDPSQHFKVGQVVNVHVLKVDPESQKLTVSCKDPSVFGLAQ 724

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
                ++  + E ++ L   K N      ++G  + + +          G +    E+   
Sbjct: 725  QNALKNLKIGEILSALVIEKSNDDISVEIQGLGLKATLP--------VGHLTDGSENKSR 776

Query: 901  YGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKK 959
              F          +  G V+   A+LD  +  RL+ L+ K   +         + AQ K 
Sbjct: 777  SSF--------KNIRVGQVLTDLAVLDKHEQRRLIVLTNKPALV---------KAAQSKT 819

Query: 960  RKR---EASKDLGVHQTVNAIV-------------EIVKENYLVLSLPEYNHSIGYASVS 1003
              R   +  KD  VH  V  I               ++ +N +    PE N  +      
Sbjct: 820  LLRLFDDVKKDRTVHGFVKNITLTAVFVQFGGGLTGLLPKNMI----PEKNLRLPDFGFK 875

Query: 1004 DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV 1063
             + T +    +  NG       +A  +S    +  L      +      +  K      +
Sbjct: 876  KWQTVEVKVIKIDNGLRRFLLSLADATSDKKPQESLAPGTNQDAVNPVDETIKSIDDITL 935

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLFSNFKIGQTVTARI 1121
            G L +A I+ +K  ++ ++      GRI +++  D  S +   +    +F   Q +  R+
Sbjct: 936  GRLTKARISSVKDTQVNVQLADNIQGRIDVSQAFDSWSEIKSKKQPLKSFSPKQIIDVRV 995

Query: 1122 IAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
            +   +  + +         K+ ++ELS KPS  T +      L +   + +G     +V 
Sbjct: 996  LGIHDARNHRFLPISHRSGKTLVFELSAKPSDQTEAAQDPVSLDK---IKLGSSWLAFVN 1052

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
             V  +   + +S +++ ++  LD + + S L++ +  F IG A+  HV  ++ E   L L
Sbjct: 1053 NVGADCLWVNLSPNVRGRISALDVSDDVSLLKDLEANFPIGSAIRVHVKGVDVETNRLDL 1112

Query: 1233 VLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
              R  QD               TF  + +G IV G+++++      ++VQI   +   ++
Sbjct: 1113 SARSSQDS-----------EALTFDRLSKGMIVPGKVTRV--NERQVMVQITDSISAPIN 1159

Query: 1291 FTEL-KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
             T+L  +   +DP S Y +   V+  V ++    +    V LS R+S       NSS   
Sbjct: 1160 LTDLCDDFSEADP-SKYSKNDIVRVCVTDLDIPNK---RVRLSTRAS----RVMNSSAAV 1211

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
             D +     +  I  L  N IV+G+VK+V  KG F+ L   + A V +S+LSD Y++  +
Sbjct: 1212 QDAE-----ISSISQLKVNDIVRGFVKHVADKGLFVNLGGNVTAYVRISDLSDSYIKDWK 1266

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS--NLHVGDIVIGQIKR 1467
             EF + +LV G+V  V+ +   ++++LK S      +  I  L+  ++HVG ++ G+I++
Sbjct: 1267 SEFQVDQLVKGKVTVVDEVLNHIQLSLKPS---VIDKDYIAPLTFNDIHVGQVITGKIRK 1323

Query: 1468 VESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
            VE +G+FI ++ + N+ GLCH SE++E  V +++ +Y  G++VK  +LK+D EK+RIS  
Sbjct: 1324 VEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLYSDGDEVKAIVLKMDPEKKRISFS 1383

Query: 1527 MKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA----VQDMDMESEDGGS 1582
            MK+S+F+ D +     SE++  E ++        +  E+        VQD++  +ED   
Sbjct: 1384 MKASHFE-DGEESDDGSEDDGVEGVKLDNMDLDDNDDESEGGVEFDDVQDLESATEDADE 1442

Query: 1583 LVLAQIESRA---SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKE 1639
               +  E +     VP L     D   D+ N          E + ++EK        +K 
Sbjct: 1443 AFDSDEEMQDVGDDVPALSAGGFDWSADILNQADGQSNADSEEECVEEK-------PKKN 1495

Query: 1640 EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1699
            +R+ EI+      L+ + P++  +FERL+   P+SS +W +YMAF + ++++ KAR +AE
Sbjct: 1496 KRKAEIKIDRTGDLDANGPQSVSDFERLLLGQPDSSSLWTQYMAFQMQLSELGKAREVAE 1555

Query: 1700 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1759
            RA++TIN+REE EKLNIW+A  NLE  YGN  +E V +VF+RA QY D ++VH  L  +Y
Sbjct: 1556 RAIKTINMREETEKLNIWLALLNLEIAYGN--DETVEEVFKRACQYNDAQEVHERLASIY 1613

Query: 1760 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL---LKQQQEGVQAVVQRALLSLPRHK 1816
             ++ +N+ ADEL   + KKF  S  VW+     L   L     G +A++ RA  SLP H 
Sbjct: 1614 IQSGKNEKADELFQTLTKKFSQSPTVWVNYAHFLFNTLGSPDRG-RALLARATQSLPPHT 1672

Query: 1817 HIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874
            H+    + A LEF++  G  +RGR++FEG+L+++ KR D+W   LD EI+ GD  + RG+
Sbjct: 1673 HLPLTLKFAALEFRSEHGSPERGRTIFEGVLAKWSKRLDIWGQLLDLEIKAGDAAIARGI 1732

Query: 1875 FERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            FER   +  L PK  K  FK++ E+E+  G+++  E V+  A E+V S
Sbjct: 1733 FERVTRIKGLKPKGAKGWFKRWSEWEEVNGDKKSQERVRAIAEEWVRS 1780



 Score =  216 bits (549), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 318/1380 (23%), Positives = 575/1380 (41%), Gaps = 158/1380 (11%)

Query: 40   AQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERK 99
            A  ++ P +++V  FPRGG   LT  E  +I      + +A    L ++   K  K + +
Sbjct: 52   ATKISRPKEEEV-AFPRGGASVLTPLEHKQI------QIDATRDVLFEQYGAKPSKPDGE 104

Query: 100  ANETVDDLGSLFGDGISGKLPRYANK------------ITLKNISAGMKLWGVVAEVNEK 147
              E  D           GK  + A              ++ K +  G  + G V+++N  
Sbjct: 105  VQEGEDTSKVKKKGKGKGKGKKAAQDTDVEEEAVKIEGLSYKRLVPGSLVLGQVSQINAT 164

Query: 148  DLVICLPGGLRGLARAADALDPILDNEIEA--------------NEDNLLPTIFHVGQLV 193
            D+ + LP  L G        D   +  IEA               +D  L  +F +GQ +
Sbjct: 165  DIALSLPNNLTGYVPITSISDKATE-RIEAIAAAEEDDVEDELEVQDIDLKKMFSMGQYL 223

Query: 194  SCIVLQLDDDKKEI----GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
               V+   DD        GKR+I LSLR       ++ + +     L A V S+EDHG I
Sbjct: 224  RAYVVSTSDDTNTATLGKGKRRIELSLRPQHANNAVTSQNLIANTTLMASVTSVEDHGLI 283

Query: 250  LHFGL--PSFTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 306
            ++ GL      GF+   ++     + DV+ G +   +V  +    K V L +D   +   
Sbjct: 284  MNIGLEDSGIRGFMGAKDIGHEVVLADVQEGAVFLCMVTGLSSNGKTVKLCADTQKIGNL 343

Query: 307  VTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 364
               +      ++D  +PG  V   +  +   GV    +     T D+ H          +
Sbjct: 344  KKSNYLTDAPTVDAFLPGTAVEILIVDVSSRGVTGKVMGMVDVTADLMHSGTGVMNQELE 403

Query: 365  NDYNQHKKVNARILFVDPTS--RAVGLTLNPYLLH----------NRAPP-SHVKVGDIY 411
              +    KV  R++   P S  + +G++L  ++            N+  P   + +  I 
Sbjct: 404  KKFKIGAKVRGRVICTFPNSDPQKLGVSLLDHVASLSPQQAGKPGNKVDPLDALPLSAII 463

Query: 412  DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRIL 468
            ++  + +V+ G+GL +D+    +  P +V IS V + ++  LE+    YK GS  R R+L
Sbjct: 464  EEVTIKKVESGVGLFVDVGVKGI--PGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVL 521

Query: 469  GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSFGA-IVQFPGGVK 523
             +  L+G+    L+ S  E       D+K G VVKGKV    +  + FG  +V     + 
Sbjct: 522  AYNSLDGVYLVSLEKSVLEQAYLRIEDLKVGEVVKGKVEKLIVNANGFGGLLVNLAENIS 581

Query: 524  ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYA 581
             L P  H+++ +++ P KKFK G  +  RVL      ++I +T KKTLV S+    +SY 
Sbjct: 582  GLVPETHLADVQLLHPEKKFKEGMSVTARVLSTDPGKRQIRLTLKKTLVNSESPAFTSYD 641

Query: 582  EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                 + + G I  I   G  V+FY  ++GF P SE+      +PS  + VGQVV   ++
Sbjct: 642  GIIVGMQSPGTIVNIMNTGAVVQFYGNIRGFLPVSEMSEAYIQDPSQHFKVGQVVNVHVL 701

Query: 642  SSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 695
               P S+++ +S      F +      ++  +K+G ++S +V   + + + V +   G  
Sbjct: 702  KVDPESQKLTVSCKDPSVFGLAQQNALKN--LKIGEILSALVIEKSNDDISVEIQGLGL- 758

Query: 696  KGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQ- 751
            K T+P  HL D  E+ +      I+ G     L VLD       ++L+ K +L+ +AQ  
Sbjct: 759  KATLPVGHLTDGSENKSRSSFKNIRVGQVLTDLAVLDKHEQRRLIVLTNKPALVKAAQSK 818

Query: 752  -LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
             L      +  +  VHG+V NI  T  FV+F G LTG  P++   +         +   Q
Sbjct: 819  TLLRLFDDVKKDRTVHGFVKNITLTAVFVQFGGGLTGLLPKNMIPEKNLRLPDFGFKKWQ 878

Query: 811  SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            +V   ++ +++   R  LSL      +T     QE          +         +K ++
Sbjct: 879  TVEVKVIKIDNGLRRFLLSL----ADATSDKKPQESLAPGTNQDAVNPVDET---IKSID 931

Query: 871  GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA-------A 923
               +G + + ++    D  V V   ++  + G I   Q   +  E  S  Q         
Sbjct: 932  DITLGRLTKARISSVKDTQVNVQLADN--IQGRIDVSQAFDSWSEIKSKKQPLKSFSPKQ 989

Query: 924  ILDV-------AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVHQTVN 975
            I+DV       A+  R + +S ++     F E ++    Q +  +   S D + +  +  
Sbjct: 990  IIDVRVLGIHDARNHRFLPISHRSGKTLVF-ELSAKPSDQTEAAQDPVSLDKIKLGSSWL 1048

Query: 976  AIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
            A V  V  + L ++L P     I    VS D +  K  +  F  G ++   V  +   + 
Sbjct: 1049 AFVNNVGADCLWVNLSPNVRGRISALDVSDDVSLLKDLEANFPIGSAIRVHVKGVDVETN 1108

Query: 1034 AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
              RL L  ++  ++E  +  R  K      G +V  ++T +   ++ ++        I++
Sbjct: 1109 --RLDLSARSSQDSEALTFDRLSK------GMIVPGKVTRVNERQVMVQITDSISAPINL 1160

Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
            T++ DD S    + +S                 K D+ +  + +L I    + +S   S+
Sbjct: 1161 TDLCDDFSEADPSKYS-----------------KNDIVRVCVTDLDIPNKRVRLSTRASR 1203

Query: 1154 LL-----FEECDVS------IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSE 1202
            ++      ++ ++S      +   V G+V  V ++   + +  ++ A + I D     S 
Sbjct: 1204 VMNSSAAVQDAEISSISQLKVNDIVRGFVKHVADKGLFVNLGGNVTAYVRISD--LSDSY 1261

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF---QDGISDKTVDISNDNMQTFIHE 1259
            +++++  F + + V G V  +++    ++L L+P    +D I+  T    ND     IH 
Sbjct: 1262 IKDWKSEFQVDQLVKGKVTVVDEVLNHIQLSLKPSVIDKDYIAPLTF---ND-----IHV 1313

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            G ++ G+I K+      +VV    ++ G  H +E+    V D    Y +G  VK  VL++
Sbjct: 1314 GQVITGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLYSDGDEVKAIVLKM 1373



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 36/284 (12%)

Query: 308  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF----PTTNW 363
            ++D + ++ D L  GM+V  +V  + E  VM+      +  +++  L + F    P+   
Sbjct: 1117 SQDSEALTFDRLSKGMIVPGKVTRVNERQVMVQITDSISAPINLTDLCDDFSEADPSKYS 1176

Query: 364  KNDYNQHKKVNARILFVD---PTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 420
            KND         R+   D   P  R    T    ++++ A     ++  I  Q KV  + 
Sbjct: 1177 KNDI-------VRVCVTDLDIPNKRVRLSTRASRVMNSSAAVQDAEISSI-SQLKVNDIV 1228

Query: 421  RGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG---- 469
            RG        GL +++     +  AYV ISD+++  ++  + +++    V+ ++      
Sbjct: 1229 RGFVKHVADKGLFVNLGG---NVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEV 1285

Query: 470  FRHLE-GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALC 526
              H++  L   ++       L F  +D+  G V+ GK+  V+ FG  +   G   V  LC
Sbjct: 1286 LNHIQLSLKPSVIDKDYIAPLTF--NDIHVGQVITGKIRKVEDFGVFIVVDGSANVSGLC 1343

Query: 527  PLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 568
                M+E  +    K +  G E+   VL +  + KRI+ + K +
Sbjct: 1344 HQSEMAEKRVHDVKKLYSDGDEVKAIVLKMDPEKKRISFSMKAS 1387


>gi|156120853|ref|NP_001095573.1| protein RRP5 homolog [Bos taurus]
 gi|224493288|sp|A7MB10.1|RRP5_BOVIN RecName: Full=Protein RRP5 homolog; AltName: Full=Programmed cell
            death protein 11
 gi|154425541|gb|AAI51278.1| PDCD11 protein [Bos taurus]
          Length = 1874

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 409/1470 (27%), Positives = 678/1470 (46%), Gaps = 169/1470 (11%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG     + E+    +       ++  E E+ +R   KK +K   KT++   ET   
Sbjct: 8    FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKR---KKIQKGPAKTKKLKVETRQ- 63

Query: 107  LGSLFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
                     S K  R   +I  ++++  GM++ G V EVNE +L I LP GL+G  +  +
Sbjct: 64   ---------SSKFVREKFEILNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTE 114

Query: 166  ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
              D   +  NE  A E+ L     LP +F  G LV C+V  LD  K    K+ + LSL  
Sbjct: 115  ICDAYTEKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTKG--SKKNVMLSLNP 172

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + + LS ET++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 173  KNVNRVLSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAK 232

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  ++  +  +R VV LS     VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 233  LKVGQYLNCLIEEVKGSRGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVT 292

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              G+ L FL++F+G VD  HL      T + N     ++V A +L V P +RAV L+L P
Sbjct: 293  PLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRP 347

Query: 394  YLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
              L    P + +   ++G + D   V       G    +      T AY   + ++  + 
Sbjct: 348  VFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKK 404

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKGKV+ + 
Sbjct: 405  TFKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIK 464

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
              G +V+    ++ L P  H+++  I  P KK+ VG E+  RVL    K+K++ +T KKT
Sbjct: 465  PHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKT 524

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+SKL  ++ Y +A   L THG+I +++ +GC V+FYN VQG  PR EL  +   +P S
Sbjct: 525  LVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPES 584

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDD------LVKLGSLVSGVVDVV 680
            +++ GQVVK  +++  P+  R+ LSF +   P +  E         V  G L    V   
Sbjct: 585  VFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEK 644

Query: 681  TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
            T + + V V+      G +PT HL+DH+ +  ++   ++ G    ++L L      +LL 
Sbjct: 645  TKDGLKVAVLPHNIP-GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLC 703

Query: 741  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
             K +L+++ +  Q P   S IHP  ++ G+V NI + G FV+F   L+G AP++   D  
Sbjct: 704  RKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKF 763

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAM 855
                S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +          LEE+  +
Sbjct: 764  VTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 823

Query: 856  LQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAG 911
                 +  S L + +     G  ++ +V E  + G V+ F E   V G +   + +  AG
Sbjct: 824  RSLMSNRDSVLIQTLAEMTPGMALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAG 881

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              +E G   +A IL+V   +  V +SL    +        NR+A+K K+  +        
Sbjct: 882  QELEPGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSD-------- 925

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
              + AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+     
Sbjct: 926  --LQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEP 983

Query: 1031 SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 1071
              T   LLL ++  +   T    R                     KK +  +G +V   +
Sbjct: 984  GVTG--LLLAIEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTV 1041

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              IKP  + +    G  G IH + + DD   V  +  +  K+G+ VTAR+I      DMK
Sbjct: 1042 KSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMK 1097

Query: 1132 K-SFL-----------WELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYV-- 1171
               FL            ELS++PS L      T++      L +      GQ VT ++  
Sbjct: 1098 TFKFLPISHPRFIRTIPELSVRPSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKK 1157

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK--L 1229
            Y +  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+   +  K  L
Sbjct: 1158 YNMVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKAFL 1217

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
               ++ P +                  + +G++  GR+ K+ +   GL V       GRV
Sbjct: 1218 CLSLIGPHK------------------LKKGEVAMGRVVKV-TPKEGLTVSFPFGRVGRV 1258

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
                + +      L  +   Q V+C VL  +  V     + LSLRS     S TN    S
Sbjct: 1259 SMFHVSDSYSETHLEDFVPQQVVRCYVLSAATPV-----LTLSLRS-----SRTNPETKS 1308

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVES 1407
               D     +  IEDL    +++G+VK+V   G  + L   +       ++S  +    +
Sbjct: 1309 KITDP---EINSIEDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNA 1365

Query: 1408 P-EKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            P ++  P GKL+  +VL +      VE++L
Sbjct: 1366 PYDRHLPEGKLLTAKVLRLNHQESLVELSL 1395



 Score =  259 bits (663), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 146/328 (44%), Positives = 220/328 (67%), Gaps = 6/328 (1%)

Query: 1598 EVNLDDEQPDMDNGISQNQGHTDEA--KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1655
            +V LD   P +      +    DE   +   +K ++  ++ EK++ E+E+   EE L++ 
Sbjct: 1542 DVGLDTLTPALPPHGDSSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRIEEALMDP 1601

Query: 1656 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1714
               P + ++F+RLV SSP+SS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKL
Sbjct: 1602 GRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL 1661

Query: 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1774
            N+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +
Sbjct: 1662 NVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNR 1719

Query: 1775 MIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833
            M+K+F+    VW++    LL++ + E    V+QRAL  LP+ +H+  I++ A LEF+ G 
Sbjct: 1720 MLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGD 1779

Query: 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1893
            A+R R++FE  LS YPKRTD+WS+Y+D  I+ G     R +FER I LSL PK+MKF FK
Sbjct: 1780 AERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFFK 1839

Query: 1894 KYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            +YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1840 RYLDYEKQHGSEKDVQAVKAKALEYVEA 1867



 Score = 70.9 bits (172), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1480
              +P +K++ +TLK    +T  +S++  ++   +   G    G I RV+ YG  +   N 
Sbjct: 509  LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 563

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            ++ GL    ELS ++V + E+++  G+ VKV +L  +  K R+ L  +
Sbjct: 564  DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 611



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 131/604 (21%), Positives = 234/604 (38%), Gaps = 113/604 (18%)

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L+  T++ G ++   +  +     LVD+      +   R     ++AQ+  R++     L
Sbjct: 179  LSAETLKPGMLLTGTVSSLEDHGYLVDIG-----VSGARAFLPLQKAQEYIRQKNKGAKL 233

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 1028
             V Q +N ++E VK +  V++L     SIG++ VS                   A +   
Sbjct: 234  KVGQYLNCLIEEVKGSRGVVTL-----SIGHSEVS-------------------AAIATE 269

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 1088
              S T   LL                         G +V+A++ ++ PL L LKF   F 
Sbjct: 270  EQSWTLNSLL------------------------PGLVVKAQVQKVTPLGLTLKFLSFFS 305

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
            G +    ++  K+      FSN    Q V A ++         ++    LS++P  L   
Sbjct: 306  GLVDFMHLDPKKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPG 353

Query: 1149 EIGSKLLFEECDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQE 1205
               ++LL ++    +    V G+       + L   T++   +  L      ++P     
Sbjct: 354  RPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA--- 410

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1265
                F  G      ++  ++  +L  L LR     I +      +D     I  G +V G
Sbjct: 411  ----FKPGNTHKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKG 458

Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRG 1325
            ++  I     G+VV++G  + G V    L +I + +P   Y  G  VKC+VL      + 
Sbjct: 459  KVLTIKPH--GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKK 516

Query: 1326 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1385
                 ++L+ +L              V++    +   +D  P +   G++  V   GC +
Sbjct: 517  LM---MTLKKTL--------------VESKLPAITCYDDAKPGLQTHGFILRVKDYGCIV 559

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-TSDSRT- 1443
                 +   V    LS  YV  PE  F  G++V   VL+ EP  +R+ ++ +  SD +  
Sbjct: 560  KFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQE 619

Query: 1444 ---ASQSEINNLSNLHVGDI-VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
                SQ +   +S   + D+ V+ + K     GL + +   N+ G    + LS DHV N 
Sbjct: 620  GEGQSQKKKKAVSAGQLADVKVLEKTKD----GLKVAVLPHNIPGFLPTAHLS-DHVTNG 674

Query: 1500 ETIY 1503
              +Y
Sbjct: 675  PLLY 678



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 164/391 (41%), Gaps = 58/391 (14%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 453  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1179
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V +   
Sbjct: 509  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 557

Query: 1180 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--NKEKKLL--RLV 1233
            ++     ++  +    L + Y P      +  F+ G+ V   VL+   +KE+ LL  RL+
Sbjct: 558  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS--KILSGV-GGLVVQIGPH-LYGRV 1289
              P Q+G             Q+   +  +  G+++  K+L     GL V + PH + G +
Sbjct: 614  SDPKQEG-----------EGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFL 662

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
                L +   + PL             L        T H  L L  S + +       L 
Sbjct: 663  PTAHLSDHVTNGPL-------------LYHWLQTGDTLHRVLCLSVSEERVLLCRKPALV 709

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
            + V+  G++ +   ++ P M++ G+VKN+   G F+     L      + LSD +V S  
Sbjct: 710  SAVEG-GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTS 768

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
              F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 769  DHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 799



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 166/436 (38%), Gaps = 64/436 (14%)

Query: 1111 FKIGQTVTARIIAKSNKPDM----------KKSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
            FK G T   RII  S   ++          +  FLW   IKP  L   ++          
Sbjct: 411  FKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKV---------- 460

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
              +  +  G V K+  +   L  + HL A + I +           ++++H+G  V   V
Sbjct: 461  --LTIKPHGMVVKMGKQIRGLVPTMHL-ADILIKNP----------EKKYHVGDEVKCRV 507

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
            L  + + K L + L+          +   +D        G I+  R+        G +V+
Sbjct: 508  LLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFIL--RVKDY-----GCIVK 560

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1340
                + G V   EL    V DP S +  GQ VK  VL    +        LS R   D  
Sbjct: 561  FYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERML---LSFRLLSDPK 617

Query: 1341 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSN 1399
                           G+  +K + +S   +    V   T  G  + +L   +   +  ++
Sbjct: 618  QEGE-----------GQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFLPTAH 666

Query: 1400 LSDGYVESPEKEFPIGKLVAG----RVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSN 1454
            LSD     P        L  G    RVL +    +RV +  K +  S         + S 
Sbjct: 667  LSDHVTNGP---LLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSE 723

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
            +H G ++IG +K ++ YG+F+    + L GL   + LS+  V +    +  G+ V  K+ 
Sbjct: 724  IHPGMLLIGFVKNIKDYGVFVQFP-SGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVT 782

Query: 1515 KVDKEKRRISLGMKSS 1530
             VD+EK+R+ L ++ S
Sbjct: 783  NVDEEKQRMLLSLRLS 798


>gi|6323885|ref|NP_013956.1| Rrp5p [Saccharomyces cerevisiae S288c]
 gi|2498865|sp|Q05022.1|RRP5_YEAST RecName: Full=rRNA biogenesis protein RRP5; AltName: Full=Ribosomal
            RNA-processing protein 5; AltName: Full=U3 small
            nucleolar RNA-associated protein RRP5; Short=U3
            snoRNA-associated protein RRP5
 gi|887610|emb|CAA90200.1| Rrp5p [Saccharomyces cerevisiae]
 gi|285814233|tpg|DAA10128.1| TPA: Rrp5p [Saccharomyces cerevisiae S288c]
 gi|392297399|gb|EIW08499.1| Rrp5p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1729

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 377/1301 (28%), Positives = 624/1301 (47%), Gaps = 178/1301 (13%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      +      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   NM T I  GD + GR+ KI      +++ +G  + G    T+  N        
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTGISFITDALNDFSLTLKE 1130

Query: 1305 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1362
             +++     +   VL +    +    +ELSLR +     S  S                 
Sbjct: 1131 AFEDKINNVIPTTVLSVDEQNK---KIELSLRPATAKTRSIKSH---------------- 1171

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
            EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +K +   + V G+V
Sbjct: 1172 EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKV 1231

Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFI 1475
            ++ +  S R+ +TL+        +SEIN         S++  GD+  G IK V  +G+F+
Sbjct: 1232 VTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFV 1282

Query: 1476 TIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
             ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK++ISL +K+S+F  
Sbjct: 1283 KLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLKASHFSK 1342

Query: 1535 DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASV 1594
            +A   +++S   +   ++++   +   ++ ++     D D ES+ G              
Sbjct: 1343 EA---ELASTTTTTTTVDQLEKEDEDEVMADA--GFNDSDSESDIGDQ------------ 1385

Query: 1595 PPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK----EEREQEIRAAE 1649
                  + D +P+   +G+S + G    A  +D+        +++    E ++ + +  +
Sbjct: 1386 ---NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQEDFTENKKHKHKRRK 1442

Query: 1650 ERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1702
            E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++++EKAR +AERAL
Sbjct: 1443 ENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERAL 1502

Query: 1703 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1762
            +TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D   +H  LLG+YE +
Sbjct: 1503 KTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSYTIHTKLLGIYEIS 1560

Query: 1763 EQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKF 1820
            E+   A EL     KKF      +W+     L+   +E   + ++  AL +LP+  HI+ 
Sbjct: 1561 EKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEV 1620

Query: 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880
            + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D   +  LFER I+
Sbjct: 1621 VRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIIT 1680

Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
              +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1681 KKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 322/1386 (23%), Positives = 596/1386 (43%), Gaps = 188/1386 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALD----PILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNIYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFVI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALRSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   I   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                  RRI  +  +   + ++     +++V   ++++  V   T ++V+V +   G  +
Sbjct: 663  DVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-R 721

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--L 752
            G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A++  L
Sbjct: 722  GVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETL 781

Query: 753  P---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            P    D   ++ +  +H Y+ +I + G FV F G+  G    S AVD +  D+SK +Y+ 
Sbjct: 782  PLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYIN 841

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            QSV   +L  + +  +  LSLK                 +E+ +          S +K  
Sbjct: 842  QSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSW 889

Query: 870  EGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSV 919
            +   IGS+++ K+   + N   V+++   H         D Y  IT  +   +  +   V
Sbjct: 890  DDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDV 949

Query: 920  IQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            I+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + Q +  
Sbjct: 950  IKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTG 1008

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTA 1034
             V     N+L L++ P     I    ++D N   F +    N +SV     AL    ++ 
Sbjct: 1009 FVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASI 1063

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             R    + AI ++    +      S+  VG  +   + +I    + L  G    G   IT
Sbjct: 1064 DREHGFVNAIGKSHVDIN-----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFIT 1118

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
            +  +D S  ++  F + KI   +   +++  + NK         ELS++P+      I S
Sbjct: 1119 DALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRPATAKTRSIKS 1170

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
                   D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E+++ +  
Sbjct: 1171 -----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKP 1223

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
             + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I  +  
Sbjct: 1224 MQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKSVTD 1277

Query: 1273 GVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
               G+ V++    ++ G  H TE+ +    D  + +  G  VK  VL+ +   +    + 
Sbjct: 1278 --FGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK---QIS 1332

Query: 1331 LSLRSS 1336
            LSL++S
Sbjct: 1333 LSLKAS 1338



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 9/156 (5%)

Query: 1375 VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
            + +V+S G  + + + +  A V   ++SD  +  PE++F IG  V GRV+SV      V 
Sbjct: 518  ITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISVNSRG-NVH 576

Query: 1434 VTLKTS-----DSRTASQSEINNLSNL-HVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
            VTLK S     D+     S   N  N+    +  +  I+  +  G  I+     L G   
Sbjct: 577  VTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFG-GLSGFLP 635

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
             SE+SE  V   E   R G+ V VK+L VD ++RRI
Sbjct: 636  NSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRI 671


>gi|71002516|ref|XP_755939.1| rRNA biogenesis protein RRP5 [Aspergillus fumigatus Af293]
 gi|66853577|gb|EAL93901.1| rRNA biogenesis protein RRP5, putative [Aspergillus fumigatus Af293]
          Length = 1822

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 366/1336 (27%), Positives = 657/1336 (49%), Gaps = 152/1336 (11%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGTVVKGKIEKLLIGPAGVDGLIVTLADGIT-GLVPSMHFADTALQFPEKK--FREGM 610

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
                ++L ++ +   + L+ K SL+NS   +  D   I P S   G + NI   G  V+F
Sbjct: 611  TITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQF 670

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVSCKDP------ST 724

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHES----NDFGVVVSFEE 896
            F + +    EKI                 G  + G+V E  V +     ++FG++   + 
Sbjct: 725  FTETYRKAFEKIQ---------------PGLRVTGTVFEKSVDDVLLKLDEFGLIARLDL 769

Query: 897  HSDVYGFITHHQLAGATVESGSVIQ-AAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
               V G  +    A + +  G  +    +LD+ +A RL+ +S +           S ++A
Sbjct: 770  AHVVDGPESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKA 819

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQ 1012
             K+       +D+     V   V  +  + L +        IG      ++D N  K P 
Sbjct: 820  AKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEF--LGGIIGLVPKRLLADENVNK-PD 876

Query: 1013 KQFLNGQSVIATVMAL------------PSSSTAG----RLLLLLKAISETETSSSKRAK 1056
               +  Q V ATV ++            PS +T+            +  E   +  +  K
Sbjct: 877  YDMVKSQLVTATVHSIDRDFQRFILSMKPSEATSAGPKKPAPKPTPSNDEVTNAVDESIK 936

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIG 1114
              S +  G  V  ++  +K  ++ ++      GRI ++EV D   ++ +       F+  
Sbjct: 937  SMSDFTFGRTVNCKVVSVKATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFRPK 996

Query: 1115 QTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1165
            Q+++ARI+    A+S+K  P   +S    ++ELS+KPS L  +   S L  E+  V +G 
Sbjct: 997  QSISARILGIHDARSHKFLPISHRSGKFPVFELSVKPSFLQAAN-PSPLNLEQ--VQVGS 1053

Query: 1166 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
               G+V  V ++   + +S +++ +L  +D++ + S   + ++ F IG A+  HV +++ 
Sbjct: 1054 TWVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAAVDT 1113

Query: 1226 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285
            EK  L L  +     +S + + +           G I+ GR++K+      +++Q+   +
Sbjct: 1114 EKGRLDLTAKQRSSKLSFEDISV-----------GMILPGRVTKVTEK--QVIMQLSDTV 1160

Query: 1286 YGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1345
             G V+  +L +       + Y +   ++  V+ + +  +    + LSLR S         
Sbjct: 1161 VGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANK---KISLSLRPS--------- 1208

Query: 1346 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1405
              LS+ +      +  ++ L  N +V+G+VK V   G F+ L   + A V +S+LSD Y+
Sbjct: 1209 KVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDSYL 1268

Query: 1406 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1465
            +  +  F + +LV GRV  V+P   R++++LK S      ++ I  + +L VG  V G++
Sbjct: 1269 KEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPIT-MHDLKVGQFVTGKV 1327

Query: 1466 KRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1524
            ++VE +G FI I+ + N+ GLCH SE+++  VD+  T+Y  G+ VK KI+K+D+E  +IS
Sbjct: 1328 RKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKIIKIDRESGKIS 1387

Query: 1525 LGMKSSYFKNDADNLQMSSEEESDE---AIEEVGSYNRSSLLENSSVAVQ-------DMD 1574
              +K+S+FK+  +  +  S+EE D    +++ +G  +     ++             D++
Sbjct: 1388 FSLKASHFKDHDEEDESGSDEEGDSNGVSLDGMGGVDVEGSDDSEDDDDDDESMGGVDLE 1447

Query: 1575 MESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK 1634
             +SE  G      +E  ++    +  L     D    +  ++    ++ + DE N+R  K
Sbjct: 1448 EDSESDGGESDEDVEMTSAPVKRDGGLGATGFDWSGNVKDDEDEAMQSDSDDEDNSRKKK 1507

Query: 1635 KKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1694
            KK ++   Q  R  E   L+ + P++  ++ERL+   P+SS +W+KYMAF L + +VEKA
Sbjct: 1508 KKSRKPEIQVDRTGE---LDANGPQSVADYERLLLGEPDSSLLWLKYMAFQLELGEVEKA 1564

Query: 1695 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1754
            R IAERAL+TI+I ++ EKLNIWVA  NLEN YGN  ++++ +VF+RA QY D ++++  
Sbjct: 1565 REIAERALRTISIGQDTEKLNIWVALLNLENTYGN--DDSLDEVFKRACQYNDTQEIYDR 1622

Query: 1755 LLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLS 1811
            +  +Y ++ +N+ ADEL    + KK  ++ K +L     L       +  ++++ RAL S
Sbjct: 1623 MTSIYIQSGKNEKADELFQTALKKKISNTPKFFLNYASFLFDSMAAPDRARSLLPRALQS 1682

Query: 1812 LPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1869
            LP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI+ GD +
Sbjct: 1683 LPSHTHVELTSKFGQLEFRSPNGDVERGRTVFEGLLSSFPKRVDLWNVLLDLEIKNGDAE 1742

Query: 1870 LIRGLFERAISL-------------------SLPPKKMKFLFKKYLEYEKSV-----GEE 1905
             +R LFER + +                    L PK+ KF FKK+L +E+ +     G+E
Sbjct: 1743 QVRRLFERVLGIRDAKNGAAAAVATPTDASKKLRPKQAKFFFKKWLSFEEKLAAANGGDE 1802

Query: 1906 ERIEYVKQKAMEYVES 1921
            + +E +K +A +YV+S
Sbjct: 1803 KMVEEIKARAADYVKS 1818



 Score =  188 bits (477), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 224/913 (24%), Positives = 387/913 (42%), Gaps = 92/913 (10%)

Query: 3   ASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSL 62
           A +R+ QK+    G +     K+Q K    +    ++  +L +  DD+ P FPRGGG  L
Sbjct: 14  AVTRQPQKRVRVGGAE---QGKDQKKQRTSESTSDLKPTELTVLRDDE-PSFPRGGGSVL 69

Query: 63  TQRERDEIHAEVDAEFEAVERGLHKKNKK--------KKKKTERKANETVDDLGSLFGDG 114
           T  E+ +IH +   +    ++G  K +            +  + + N T   L       
Sbjct: 70  TPLEKKQIHIQATKDVLFEQKGSKKSSDNFAVGDDDEDIEMDDAEDNATSTKLSRKRKAK 129

Query: 115 ISGKLPRYANK--------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
              +    AN+        +  K I  G  + G V+ +N  D+ + LP  L G      A
Sbjct: 130 SKKRAKEEANEKQGVRIEGLNFKRIVPGSMVLGQVSSINAHDIGLSLPNNLTGYVPLT-A 188

Query: 167 LDPILDNEIEAN-EDNLLPTI-----------------FHVGQLVSCIVLQLDD---DKK 205
           +   LD +IE    DN                      F++GQ +   V+ +     D  
Sbjct: 189 VSKKLDEKIEKILNDNDNEDSDAEEEDGDDDSLDLTDYFYLGQYLRASVVSVGSNAADAP 248

Query: 206 EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPR 263
              K++I LS+       GLS   ++    + A V S+EDHG ++  G+      GF+ +
Sbjct: 249 SKNKKRIELSVDPRQANAGLSKSDLEVNTAIQASVVSVEDHGLVMDLGIEGADVKGFMSK 308

Query: 264 NNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLV 320
             +   +    +K G +   +V   +    VV LS++  +              +I+  +
Sbjct: 309 KEIDPKTDYSSIKEGSVFLCMVTGQNANGSVVKLSANLQSAGSIKKSHYLSTASTINSFL 368

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG      +  +  +G++   +     TVD+          +    +    K+  RI+  
Sbjct: 369 PGTAAEILLTEVSSSGLIGKIMGMLDATVDLVQSGGNSGKDDLTKKFQMGAKIKGRIVCT 428

Query: 381 DPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            P S    VG ++  ++L        P +      +  I  ++KVV VD G+G+ + + S
Sbjct: 429 FPASEPFKVGFSILDHVLKFATEGHGPGTSEDAPAISAIIPETKVVMVDPGMGVYVQMGS 488

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           T      +V +S +A+ +V  +  +   ++  S    R++G+   +GL     +    E 
Sbjct: 489 T--KHVGFVHVSRLADGKVEHIAPEHGPFRIDSVHEARVVGYSAFDGLYLLSFERKVIEQ 546

Query: 489 LVFTHSDVKPGMVVKGKV-------IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
                 DV  G VVKGK+         VD  G IV    G+  L P  H ++  +  P K
Sbjct: 547 PFLRMEDVTVGTVVKGKIEKLLIGPAGVD--GLIVTLADGITGLVPSMHFADTALQFPEK 604

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           KF+ G  +  R+L V  + ++I +T KK+L+ S+ AI   Y +      + G I  I+ H
Sbjct: 605 KFREGMTITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPH 664

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
           G  V+FY  V+GF P SE+      +PS  +  GQVV    +S  PA  ++ +S    P+
Sbjct: 665 GAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVS-CKDPS 723

Query: 660 RVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
             +E      + ++ G  V+G V   + + V++ +   G     +   H+ D  E   + 
Sbjct: 724 TFTETYRKAFEKIQPGLRVTGTVFEKSVDDVLLKLDEFGLI-ARLDLAHVVDGPESKQIS 782

Query: 715 K-SVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
             S I+ G + + LLVLD + +  L+  SA+ SL  +A+Q  LP+    I   + V G+V
Sbjct: 783 ALSKIRVGQKLNDLLVLDIQRARRLIKVSARASLKKAAKQGSLPAKFEDIQEGAEVTGFV 842

Query: 770 CNIIETGCFVRFLGRLTGFAPR----SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            NI   G F+ FLG + G  P+     + V+    D+ K+  V  +V S    ++ +  R
Sbjct: 843 RNITSDGLFIEFLGGIIGLVPKRLLADENVNKPDYDMVKSQLVTATVHS----IDRDFQR 898

Query: 826 ITLSLKQSCCSST 838
             LS+K S  +S 
Sbjct: 899 FILSMKPSEATSA 911



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 142/315 (45%), Gaps = 39/315 (12%)

Query: 541  KKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            K F +G+ L   V  V ++  R+ +T K+    SKL    S+ + +  +I  G +TK+ +
Sbjct: 1096 KHFPIGSALKVHVAAVDTEKGRLDLTAKQR--SSKL----SFEDISVGMILPGRVTKVTE 1149

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
                ++  + V G     +L  D      ++YH   V++  ++    A+++I+LS  ++P
Sbjct: 1150 KQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANKKISLS--LRP 1207

Query: 659  TRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLA 705
            ++V    L            +K+  +V G V  V  + + V +   G+     +    L+
Sbjct: 1208 SKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTL---GHDVTAYVRVSDLS 1264

Query: 706  DHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
            D     + +K   K  ++ DQL+     V+D E   L +S K S+++   + P     + 
Sbjct: 1265 D-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLK 1318

Query: 761  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
                V G V  + E G F+       ++G   RS+  D +  D    Y  G  V++ I+ 
Sbjct: 1319 VGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKIIK 1378

Query: 819  VNSETGRITLSLKQS 833
            ++ E+G+I+ SLK S
Sbjct: 1379 IDRESGKISFSLKAS 1393



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 155/349 (44%), Gaps = 50/349 (14%)

Query: 214  LSLRLSLLYKG----LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 269
            LS++ S L       L+LE VQ G     +V ++ D    ++   P+  G L   + +++
Sbjct: 1029 LSVKPSFLQAANPSPLNLEQVQVGSTWVGFVNNVADDCLWINLS-PNVRGRLRFMDASDD 1087

Query: 270  SGI--DVKP----GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 323
              +  DV+     G  L+  V ++D  +  + L++   + SK   +D   IS+ +++PG 
Sbjct: 1088 LSLFADVEKHFPIGSALKVHVAAVDTEKGRLDLTAKQRS-SKLSFED---ISVGMILPG- 1142

Query: 324  MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILF 379
                RV  + E  V++       G V++  L + +    PT   KND      + A ++ 
Sbjct: 1143 ----RVTKVTEKQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDV-----LRACVVG 1193

Query: 380  VDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGLGLLLDI 429
            VD  ++ + L+L P  + + + P           +KV D+  +  V RV D GL + L  
Sbjct: 1194 VDKANKKISLSLRPSKVLSSSLPVQDPEITSMKQLKVNDVV-RGFVKRVADSGLFVTLGH 1252

Query: 430  PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE-- 487
              T     AYV +SD+++  +++ +  ++    V+ R+      +G     LK S  +  
Sbjct: 1253 DVT-----AYVRVSDLSDSYLKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPE 1307

Query: 488  -GLVFTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSE 533
                 T  D+K G  V GKV  V+ FGA  ++     +  LC    M++
Sbjct: 1308 YKAPITMHDLKVGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMAD 1356



 Score = 54.3 bits (129), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G V  V +  L I L   +RG  R  DA D + L  ++E +      
Sbjct: 1044 LNLEQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKH------ 1097

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D +K   G+  +    R S     LS E +  GM+L   V  + 
Sbjct: 1098 --FPIGSALKVHVAAVDTEK---GRLDLTAKQRSS----KLSFEDISVGMILPGRVTKVT 1148

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   +LA++      P +     +L+  V  +D+  K + LS  
Sbjct: 1149 EKQVIMQLS-DTVVGAVNLIDLADDYS-KANPTVYHKNDVLRACVVGVDKANKKISLSLR 1206

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L ++
Sbjct: 1207 PSKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDS 1266

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQ 413
            +    WK+ +   + V  R+  VDP    + ++L   +L    +AP +   +KVG  +  
Sbjct: 1267 Y-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQ-FVT 1324

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             KV +V+     ++   S  +S   +   S++A++ V      Y+EG  V+ +I+     
Sbjct: 1325 GKVRKVEEFGAFIVIDRSANISGLCHR--SEMADKRVDDARTLYEEGDLVKAKIIKIDRE 1382

Query: 474  EGLATGILKASAFE 487
             G  +  LKAS F+
Sbjct: 1383 SGKISFSLKASHFK 1396


>gi|242817707|ref|XP_002487008.1| rRNA biogenesis protein RRP5, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218713473|gb|EED12897.1| rRNA biogenesis protein RRP5, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1810

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 373/1377 (27%), Positives = 670/1377 (48%), Gaps = 161/1377 (11%)

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMK----PTRVSEDDLVKLGSLVSGVVD--VVTPN 683
            +  G   K RI+          LSF  K    P    ED  V LG +V G ++  ++ P 
Sbjct: 506  FKTGSTHKARIIGHNSVDNLYLLSFEKKVIDQPYIRLED--VPLGEVVKGKIEKLLIGPE 563

Query: 684  AV--VVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 739
             +  ++  IA G + G +P+ H AD  L+H    +   + G     ++L ++ E   + L
Sbjct: 564  GIDGLILSIADGIT-GLVPSMHFADTVLQHP---EKKFREGLAISARVLSVNLEKRQMRL 619

Query: 740  SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            + K SL+NS   +  D + I P     G + NI   G  V+F G + GF P S+  +   
Sbjct: 620  TLKKSLLNSDSAIWKDYNDIVPGQQSPGTLINIQPNGATVQFYGTVRGFLPVSEMSEAYI 679

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 859
             D S+ +  GQ V  + + V+  + ++ +S K     ST +   +E F            
Sbjct: 680  KDPSQHFRKGQVVNVHAISVDISSDKLVVSCKDP---STSSEAYREAF------------ 724

Query: 860  KHNGSELK---WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
                SE++    V G +     +  + + + +GV         V G  +    A A +  
Sbjct: 725  ----SEIRPGVSVTGTVFEKSSDDLLLKLDKYGVTARLSAVHLVDGDASKAASAFAKIRV 780

Query: 917  GSVIQ-AAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVN 975
            G  +    +L+  +  RL+ ++ K           S R+A KK       ++L V   V 
Sbjct: 781  GQKLSDLLVLEAKRVHRLIKVTHKP----------SLRKALKKNSLPSTFEELEVGTEVT 830

Query: 976  AIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 1034
              V         V  L   N  +    V D ++   P   F   Q++ AT+  +      
Sbjct: 831  GFVRGTTSHGVFVEFLGGLNGLLPRRLVDDEHSN-MPDFGFYPSQALTATIHQIDEDHR- 888

Query: 1035 GRLLLLLKAISETETSSSKRAKKK-------------------SSYDVGSLVQAEITEIK 1075
             R  L ++ +     S   ++K++                   + Y VG + +A I  IK
Sbjct: 889  -RFTLTMRPVELPTASRQAQSKERPLPEDEKPVNPVDESIQTVAEYTVGKVTKARILSIK 947

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK-- 1127
              ++ +       GRI ++EV D   ++ +       F++ + +  RI+    A+S++  
Sbjct: 948  ETQINVVLADNLQGRIDVSEVFDKWEDIKDRKQPLQKFRVKEILPVRILGLHDARSHRFL 1007

Query: 1128 ---PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1184
                   K  ++ELS KPS +T  E    L  E+  V +G  + G+V  +++++  +++S
Sbjct: 1008 PISHRTSKHPVYELSAKPSFITAGE-RKPLSLEQ--VKVGSSMIGFVNNINDDYLWISLS 1064

Query: 1185 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             +++ ++  +D + + S L + +  + +G A+   V  ++ +K  L L ++      S  
Sbjct: 1065 PNVRGRVRAIDLSDDLSTLTDLESNYPMGSALKVRVTGVDSDKGHLDLSVK------SGS 1118

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T ++S D +     +G I+ GR++K+      +++Q+   L G V  T++ +       S
Sbjct: 1119 TRELSFDKLS----KGMILPGRVTKVTEK--QIIMQLSDSLVGAVTITDMADDYSKIDTS 1172

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
             Y + + ++  ++++ ++ +  F   LSLR S           LS+ +    + +  I+ 
Sbjct: 1173 IYKKNEILRACIIDVDKSNKKIF---LSLRPS---------KVLSSTLPVRDREITSIDQ 1220

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            L  N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF   +LV GR++ 
Sbjct: 1221 LKVNDIVRGFVRKVADNGLFVTLGHSVSAYVRISDLSDSYLKEWKDEFQADQLVKGRIIF 1280

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLV 1483
            V+  +KR++++LK S   +  ++ I  + +L  G IV G++++VE +G FI I+ + N+ 
Sbjct: 1281 VDQENKRLQMSLKESVLDSNYKTPIT-IRDLKPGQIVTGKVRKVEDFGAFIVIDRSANVS 1339

Query: 1484 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS 1543
            GLCH S+++E ++D+   ++ AG+ VK KILK+D ++ +IS G+K+SYFK   D   + S
Sbjct: 1340 GLCHRSQMAEQNIDDARKLFEAGDIVKAKILKIDPKQEKISFGLKASYFK---DEEGLDS 1396

Query: 1544 EEESDE--AIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLV-------LAQIESRASV 1594
            EE SDE  +++E G     S      +++  +++E               +   + RA  
Sbjct: 1397 EEGSDEDLSMDEAGGVELHSDDSGEDMSIGGVEIEDGSDDESESSDDDEDVTTADERAQN 1456

Query: 1595 PPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1654
                +++ D     D G+S     TD  K + E+    A  K+K  R+ EI+  +   L+
Sbjct: 1457 DKGGLDVGDFDWTGDAGLSSTSKITD-GKAVGEE----ASNKKKRIRKPEIQVDQTGDLD 1511

Query: 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1714
               P++  ++ERL+   P+SS +W++YMAF L + +V+KAR I +RA+++I+I ++ EKL
Sbjct: 1512 ARGPQSVADYERLLLGEPDSSLLWLQYMAFQLELGEVDKAREIGQRAIRSISIGQDTEKL 1571

Query: 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1774
            NIWVA  NLEN YG   ++++ +VF++A QY D ++++  L+ +Y ++ +N+ ADEL   
Sbjct: 1572 NIWVALLNLENTYGT--DDSLEEVFKKACQYNDTQEIYERLISIYIQSGKNEKADELFQT 1629

Query: 1775 MIKKFKHSCKVWLRRVQRLL---KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK- 1830
             +KK  +S + +       L       +  + +  RAL SLP + H+    +   LEF+ 
Sbjct: 1630 ALKKKVYSGQKFFINYATFLFDTLANPDRGRDLFPRALQSLPSNTHVDTTCKFIQLEFRS 1689

Query: 1831 -NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS------- 1882
             NG  +RGR++FEG+LS +PKRTDLW+I LD EI+ GD D +R +F+R + +S       
Sbjct: 1690 PNGDVERGRTLFEGLLSSFPKRTDLWNILLDLEIKQGDADQVRSVFQRVLGISTVLKKKG 1749

Query: 1883 -------------LPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYVES 1921
                         L PKK +F FKK+L++E+ +     G E+ +E VK +A +YV S
Sbjct: 1750 AVPTPASTETQKKLKPKKARFFFKKWLDFEEKLAAAEGGNEKMVEEVKARAADYVNS 1806



 Score =  234 bits (597), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 332/1387 (23%), Positives = 603/1387 (43%), Gaps = 125/1387 (9%)

Query: 54   FPRGGGHSLTQRERDEIH--AEVDAEFE---------AVERGLHKKNKKKKKKTERKANE 102
            FPRGGG  LT  ER +I   A  D  FE          ++ G+  ++   + + ++ A  
Sbjct: 65   FPRGGGSVLTPLERKQIQIQATRDVLFEQKRSGKSTEGLDDGISDEDIDMQDEGKKPATT 124

Query: 103  TVDDLGSLFGDGISGKLPRYANKI---TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG 159
                         S K  +   ++   + K ++ G  + G V  +N  D+ + LP  L G
Sbjct: 125  KKSRKSKNKKSRDSEKKTKEGVRVEGLSFKRLTIGTMVLGQVTSINSHDIGLALPNNLTG 184

Query: 160  ---LARAADALDPILDNEIEANEDN---------LLPT-IFHVGQLVSCIVLQLDDDKKE 206
               L   ++  D  ++N + A ++N         L P+  F+VGQ +   V        E
Sbjct: 185  YVPLTAISEVFDKKIENVLNAEDENEDDDSEEDSLDPSDYFYVGQYLRAYVTSTGSSAVE 244

Query: 207  IG----KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGF 260
             G    K+KI LSL       GLS   + EG ++ A V SIEDHG ++  GL      GF
Sbjct: 245  AGTAKIKKKIELSLDPRQANTGLSESDLVEGAMVQASVASIEDHGCVMDIGLGKKGAKGF 304

Query: 261  LPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLV 320
            +   + A  S I  K G +L  +V  ++ +R +  LSS   T +   +      +I   +
Sbjct: 305  MASTDEAIQSNI--KEGAVLLCIVTGVNASRTIFQLSSKLQTAASPKSVLKSAPTIQTFL 362

Query: 321  PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
            PG      + S+ E G++   +     TVD  H      + N    Y    K+ ARI   
Sbjct: 363  PGTAAEILLTSVTETGLVGKIMGLLDATVDFVHSGANSGSFNLTTKYQLGAKIKARITCT 422

Query: 381  DPTSRA--VGLTLNPYLLHNRAPPSHVKV-----GDIYDQSKVVRVDRGLGLLLDIPSTP 433
             P +    VG ++   +L  R  PS  +V     G I D ++V  V+ GLGL ++  S  
Sbjct: 423  FPAAEPFKVGASVLENILEWRRTPSTQEVSSPSIGTILD-ARVTTVEPGLGLYVEFGS-- 479

Query: 434  VSTPAYVTISDVAE---EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
            +    +V IS VA+   E +   +  +K GS  + RI+G   ++ L     +    +   
Sbjct: 480  LKHLGFVHISRVADGTVESISAEQGAFKTGSTHKARIIGHNSVDNLYLLSFEKKVIDQPY 539

Query: 491  FTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKV 545
                DV  G VVKGK+    I  +   G I+    G+  L P  H ++  +  P KKF+ 
Sbjct: 540  IRLEDVPLGEVVKGKIEKLLIGPEGIDGLILSIADGITGLVPSMHFADTVLQHPEKKFRE 599

Query: 546  GAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 603
            G  +  RVL V  + +++ +T KK+L+ S  AI   Y +      + G +  I+ +G  V
Sbjct: 600  GLAISARVLSVNLEKRQMRLTLKKSLLNSDSAIWKDYNDIVPGQQSPGTLINIQPNGATV 659

Query: 604  RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
            +FY  V+GF P SE+      +PS  +  GQVV    +S   +S ++ +S    P+  SE
Sbjct: 660  QFYGTVRGFLPVSEMSEAYIKDPSQHFRKGQVVNVHAISVDISSDKLVVS-CKDPSTSSE 718

Query: 664  D-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSV 717
                    ++ G  V+G V   + + +++ +   G +   +   HL D     A    + 
Sbjct: 719  AYREAFSEIRPGVSVTGTVFEKSSDDLLLKLDKYGVT-ARLSAVHLVDGDASKAASAFAK 777

Query: 718  IKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNII 773
            I+ G +   LLVL+ +  + L+  + K SL  + ++  LPS    +   + V G+V    
Sbjct: 778  IRVGQKLSDLLVLEAKRVHRLIKVTHKPSLRKALKKNSLPSTFEELEVGTEVTGFVRGTT 837

Query: 774  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSK-TYYVGQSVRSNILDVNSETGRITLSLKQ 832
              G FV FLG L G  PR + VD + +++    +Y  Q++ + I  ++ +  R TL+++ 
Sbjct: 838  SHGVFVEFLGGLNGLLPR-RLVDDEHSNMPDFGFYPSQALTATIHQIDEDHRRFTLTMRP 896

Query: 833  -SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE------- 884
                +++  +  +E  L E++    +        ++ V  + +G V + ++         
Sbjct: 897  VELPTASRQAQSKERPLPEDE----KPVNPVDESIQTVAEYTVGKVTKARILSIKETQIN 952

Query: 885  ---SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLK 939
               +++    +   E  D +  I   +          ++   IL +  A++ R + +S +
Sbjct: 953  VVLADNLQGRIDVSEVFDKWEDIKDRKQPLQKFRVKEILPVRILGLHDARSHRFLPISHR 1012

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIG 998
            T     +  +         +RK  + + + V  ++   V  + ++YL +SL P     + 
Sbjct: 1013 TSKHPVYELSAKPSFITAGERKPLSLEQVKVGSSMIGFVNNINDDYLWISLSPNVRGRVR 1072

Query: 999  YASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK 1057
               +S D +T    +  +  G ++   V  +   S  G L L +K+ S  E S  K +K 
Sbjct: 1073 AIDLSDDLSTLTDLESNYPMGSALKVRVTGV--DSDKGHLDLSVKSGSTRELSFDKLSK- 1129

Query: 1058 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 1117
                  G ++   +T++   ++ ++      G + IT++ DD S +  ++   +K  + +
Sbjct: 1130 ------GMILPGRVTKVTEKQIIMQLSDSLVGAVTITDMADDYSKIDTSI---YKKNEIL 1180

Query: 1118 TARII--AKSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYK 1173
             A II   KSN    KK F   LS++PS +  S   +  + +     + +   V G+V K
Sbjct: 1181 RACIIDVDKSN----KKIF---LSLRPSKVLSSTLPVRDREITSIDQLKVNDIVRGFVRK 1233

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            V +    +T+   + A + I D     S L+E++  F   + V G ++ +++E K L++ 
Sbjct: 1234 VADNGLFVTLGHSVSAYVRISD--LSDSYLKEWKDEFQADQLVKGRIIFVDQENKRLQMS 1291

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
            L+        ++V  SN      I +   G IV G++ K+      +V+    ++ G  H
Sbjct: 1292 LK--------ESVLDSNYKTPITIRDLKPGQIVTGKVRKVEDFGAFIVIDRSANVSGLCH 1343

Query: 1291 FTELKNICVSDPLSGYDEGQFVKCKVLEIS-RTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
             +++    + D    ++ G  VK K+L+I  +  + +F ++ S     +G+ S   SD  
Sbjct: 1344 RSQMAEQNIDDARKLFEAGDIVKAKILKIDPKQEKISFGLKASYFKDEEGLDSEEGSDED 1403

Query: 1350 TDVDTPG 1356
              +D  G
Sbjct: 1404 LSMDEAG 1410



 Score = 68.9 bits (167), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 121/531 (22%), Positives = 225/531 (42%), Gaps = 79/531 (14%)

Query: 1059 SSYDVGSLVQAEITEIKP-LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQT 1116
            SS  +G+++ A +T ++P L L ++FG   H G +HI+ V D     +      FK G T
Sbjct: 452  SSPSIGTILDARVTTVEPGLGLYVEFGSLKHLGFVHISRVADGTVESISAEQGAFKTGST 511

Query: 1117 VTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV-- 1174
              ARII  ++  +     L+ LS +  ++    I  +      DV +G+ V G + K+  
Sbjct: 512  HKARIIGHNSVDN-----LYLLSFEKKVIDQPYIRLE------DVPLGEVVKGKIEKLLI 560

Query: 1175 ---DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
                 +  +L+I+  +     +    +  + LQ  +++F  G A++  VLS+N EK+ +R
Sbjct: 561  GPEGIDGLILSIADGITG--LVPSMHFADTVLQHPEKKFREGLAISARVLSVNLEKRQMR 618

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-----LY 1286
            L L+            + N +   +    DIV G+ S       G ++ I P+      Y
Sbjct: 619  LTLKK----------SLLNSDSAIWKDYNDIVPGQQSP------GTLINIQPNGATVQFY 662

Query: 1287 GRVH----FTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
            G V      +E+    + DP   + +GQ V                  +S+  S D +  
Sbjct: 663  GTVRGFLPVSEMSEAYIKDPSQHFRKGQVVNVHA--------------ISVDISSDKL-V 707

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLS 1401
             +  D ST  +    + E   ++ P + V G V   +S    + L +  + A++   +L 
Sbjct: 708  VSCKDPSTSSEA---YREAFSEIRPGVSVTGTVFEKSSDDLLLKLDKYGVTARLSAVHLV 764

Query: 1402 DG---YVESPEKEFPIG-KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLH 1456
            DG      S   +  +G KL    VL  + + + ++VT K S  +   ++ + +    L 
Sbjct: 765  DGDASKAASAFAKIRVGQKLSDLLVLEAKRVHRLIKVTHKPSLRKALKKNSLPSTFEELE 824

Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
            VG  V G ++   S+G+F+      L GL     + ++H +  +  +   + +   I ++
Sbjct: 825  VGTEVTGFVRGTTSHGVFVEFLG-GLNGLLPRRLVDDEHSNMPDFGFYPSQALTATIHQI 883

Query: 1517 DKEKRRISLGMKSSYFKNDADNLQMSS----EEES-----DEAIEEVGSYN 1558
            D++ RR +L M+       +   Q       E+E      DE+I+ V  Y 
Sbjct: 884  DEDHRRFTLTMRPVELPTASRQAQSKERPLPEDEKPVNPVDESIQTVAEYT 934


>gi|402881399|ref|XP_003904261.1| PREDICTED: protein RRP5 homolog [Papio anubis]
          Length = 1871

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 404/1472 (27%), Positives = 685/1472 (46%), Gaps = 163/1472 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGMVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  ++ +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGTVLDDVPVQGFFKKAGATFRLKDGVL---AYARLNHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  ++
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVR 826

Query: 858  S--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
            S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  V
Sbjct: 827  SLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEV 886

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ  
Sbjct: 887  ESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ-- 929

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T
Sbjct: 930  -AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT 988

Query: 1034 AGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEI 1074
               LLL ++  +   T    R                     KK +  +G +V   +  I
Sbjct: 989  G--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSI 1046

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-S 1133
            KP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK   
Sbjct: 1047 KPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFK 1102

Query: 1134 FL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            FL            ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 FLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL- 1221

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                        I    ++    EG++  GR+ K+     GL V       G V    + 
Sbjct: 1222 ------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHVS 1264

Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1355
            +     PL  +   + V+C +L  + +V     + LSLR      SS  + +  + V+ P
Sbjct: 1265 DSYSETPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP 1313

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE---- 1411
               +  I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+    
Sbjct: 1314 --EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALYN 1368

Query: 1412 --FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
               P GKL+  RVL +      VE++    D+
Sbjct: 1369 KHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400



 Score =  292 bits (748), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1677
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1562 DEKPHQATKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1621

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1622 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1679

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1797
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1680 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1739

Query: 1798 Q-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            Q E    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1740 QAEASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1799

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1800 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1859

Query: 1917 EYVES 1921
            EYVE+
Sbjct: 1860 EYVEA 1864



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 151/326 (46%), Gaps = 46/326 (14%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++RL LRP           +S  N+ T + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGTVLDDVPVQGFFKKAGATF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARLNHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +
Sbjct: 433  ---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVLTIKSYGMLVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S
Sbjct: 473  GEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLVES 528

Query: 1448 E---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++ 
Sbjct: 529  KLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFY 587

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ VKV +L  +  K R+ L  K S
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 188/458 (41%), Gaps = 47/458 (10%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1136
             RLK G+  + R++   ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARLN--HLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 432  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLVPPMHL 485

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 486  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGL 543

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
               G I+  R+        G +V+   ++ G V   EL    + DP   +  GQ VK  V
Sbjct: 544  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAV 596

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L          + E S    L  +S   SSD     +  G   +K + ++   +V   V 
Sbjct: 597  L----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVL 644

Query: 1377 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVE 1433
              T  G  + +L   + A +  S+LSD     P        G ++  RVL +      V 
Sbjct: 645  EKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGHVL 703

Query: 1434 VTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            +  K +   T    +   N S +H G ++IG +K ++ YG+FI    + L GL   + +S
Sbjct: 704  LCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMS 762

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 763  DKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 41.2 bits (95), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1446 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPS 1362

Query: 1499 IETIYRA----GEKVKVKILKVDKEKRRISL 1525
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|151945933|gb|EDN64165.1| U3 snoRNP protein [Saccharomyces cerevisiae YJM789]
          Length = 1729

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 378/1301 (29%), Positives = 624/1301 (47%), Gaps = 178/1301 (13%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVDVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     S++K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSSYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   NM T I  GD + GR+ KI      +++ +G  + G    T+  N        
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTGISFITDALNDFSLTLKE 1130

Query: 1305 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1362
             +++     +   VL +    +    +ELSLRS+     S  S                 
Sbjct: 1131 AFEDKINNVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH---------------- 1171

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
            EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +K +   + V G+V
Sbjct: 1172 EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKV 1231

Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFI 1475
            ++ +  S R+ +TL+        +SEIN         S++  GD+  G IK V  +G+F+
Sbjct: 1232 VTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFEGTIKNVTDFGVFV 1282

Query: 1476 TIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
             ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK++ISL +K+S+F  
Sbjct: 1283 KLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLKASHFSK 1342

Query: 1535 DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASV 1594
            +A   +++S   +    +++   +   ++ ++     D D ES+ G              
Sbjct: 1343 EA---ELASTTTTTTTTDQLEKEDEDEVMADA--GFNDSDSESDIGDQ------------ 1385

Query: 1595 PPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK----EEREQEIRAAE 1649
                  + D +P+   +G+S + G    A  +D+        +++    E ++ + +  +
Sbjct: 1386 ---NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQEDFTENKKHKHKRRK 1442

Query: 1650 ERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1702
            E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++++EKAR +AERAL
Sbjct: 1443 ENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERAL 1502

Query: 1703 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1762
            +TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D   +H  LLG+YE +
Sbjct: 1503 KTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSYTIHTKLLGIYEIS 1560

Query: 1763 EQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKF 1820
            E+   A EL     KKF      +W+     L+   +E   + ++  AL +LP+  HI+ 
Sbjct: 1561 EKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEV 1620

Query: 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880
            + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D   +  LFER I+
Sbjct: 1621 VRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIIT 1680

Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
              +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1681 KKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  192 bits (488), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 325/1391 (23%), Positives = 597/1391 (42%), Gaps = 198/1391 (14%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALD----PILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALKSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG----VVDVV--TPNAVVVYVIA 691
                  RRI     +   +VS +   +    + ++V G     VDV+  T ++V+V +  
Sbjct: 663  DVDADRRRI-----IATCKVSNEQAAQQKDTIENIVPGRTIITVDVIEKTKDSVIVEIPD 717

Query: 692  KGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSA 749
             G  +G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A
Sbjct: 718  VGL-RGVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDA 776

Query: 750  QQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
            ++  LP    D   ++ +  +H Y+ +I + G FV F G+  G    S AVD +  D+SK
Sbjct: 777  KKETLPLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISK 836

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
             +Y+ QSV   +L  + +  +  LSLK                 +E+ +          S
Sbjct: 837  AFYINQSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DS 884

Query: 865  ELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATV 914
             +K  +   IGS+++ K+   + N   V+++   H         D Y  IT  +   ++ 
Sbjct: 885  SIKSWDDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSSY 944

Query: 915  ESGSVIQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
            +   VI+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + 
Sbjct: 945  KKDDVIKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIG 1003

Query: 972  QTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP- 1029
            Q +   V     N+L L++ P     I    ++D N   F +    N +SV     AL  
Sbjct: 1004 QELTGFVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQV 1058

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 1089
              ++  R    + AI ++    +      S+  VG  +   + +I    + L  G    G
Sbjct: 1059 KVASIDREHGFVNAIGKSHVDIN-----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTG 1113

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTV 1147
               IT+  +D S  ++  F + KI   +   +++  + NK         ELS++ +    
Sbjct: 1114 ISFITDALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKT 1165

Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1207
              I S       D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E++
Sbjct: 1166 RSIKS-----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWK 1218

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            + +   + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I
Sbjct: 1219 KFYKPMQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTI 1272

Query: 1268 SKILSGVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRG 1325
              +     G+ V++    ++ G  H TE+ +    D  + +  G  VK  VL+ +   + 
Sbjct: 1273 KNVTD--FGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK- 1329

Query: 1326 TFHVELSLRSS 1336
               + LSL++S
Sbjct: 1330 --QISLSLKAS 1338


>gi|355562752|gb|EHH19346.1| hypothetical protein EGK_20032 [Macaca mulatta]
          Length = 1871

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 401/1469 (27%), Positives = 682/1469 (46%), Gaps = 157/1469 (10%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIIEKVKGNGGVVSLSVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  ++
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVR 826

Query: 858  S--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
            S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  V
Sbjct: 827  SLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEV 886

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ  
Sbjct: 887  ESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ-- 929

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T
Sbjct: 930  -AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT 988

Query: 1034 AGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEI 1074
               LLL ++  +   T    R                     KK +  +G +V   +  I
Sbjct: 989  G--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSI 1046

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-S 1133
            KP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK   
Sbjct: 1047 KPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFK 1102

Query: 1134 FL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            FL            ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 FLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVIGPDSSKAFLCLSL- 1221

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                        I    ++    EG++  GR+ K+     GL V       G V    + 
Sbjct: 1222 ------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHVS 1264

Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1355
            +     PL  +   + V+C +L  + +V     + LSLR      SS  + +  + V+ P
Sbjct: 1265 DSYSETPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP 1313

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEF 1412
               +  I+D+    +++GYV ++   G F  L   +      S++S           K  
Sbjct: 1314 --EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHL 1371

Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            P GKL+  RVL +      VE++    D+
Sbjct: 1372 PEGKLLTARVLRLNHQKNLVELSFLPGDT 1400



 Score =  293 bits (750), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1677
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1562 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1621

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1622 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1679

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1797
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1680 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1739

Query: 1798 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1740 QAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1799

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1800 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1859

Query: 1917 EYVES 1921
            EYVE+
Sbjct: 1860 EYVEA 1864



 Score = 81.3 bits (199), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 46/326 (14%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +
Sbjct: 433  ---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVLTIKSYGMLVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S
Sbjct: 473  GEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLVES 528

Query: 1448 E---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++ 
Sbjct: 529  KLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFY 587

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ VKV +L  +  K R+ L  K S
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 188/463 (40%), Gaps = 57/463 (12%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1136
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
             LS++ S++    +         D+  G  V G V  + +   L+ +   ++  +     
Sbjct: 432  LLSLRTSIIEAQYLRYH------DIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLV----- 480

Query: 1197 AYEPSELQEF-----QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
               P  L +      ++++HIG  V   VL  + E K L + L+          +    D
Sbjct: 481  --PPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYAD 538

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                    G I+  R+        G +V+   ++ G V   EL    + DP   +  GQ 
Sbjct: 539  AKPGLQTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQV 591

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            VK  VL          + E S    L  +S   SSD     +  G   +K + ++   +V
Sbjct: 592  VKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLV 639

Query: 1372 QGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPL 1428
               V   T  G  + +L   + A +  S+LSD     P        G ++  RVL +   
Sbjct: 640  DVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQS 698

Query: 1429 SKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
               V +  K +   T    +   N S +H G ++IG +K ++ YG+FI    + L GL  
Sbjct: 699  EGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAP 757

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 758  KAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 42.0 bits (97), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVIGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1446 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1362

Query: 1499 IETIYRA----GEKVKVKILKVDKEKRRISL 1525
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|296472696|tpg|DAA14811.1| TPA: programmed cell death 11 [Bos taurus]
          Length = 1874

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 410/1470 (27%), Positives = 678/1470 (46%), Gaps = 169/1470 (11%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG     + E+    +       ++  E E+ +R   KK +K   KT++   ET   
Sbjct: 8    FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKR---KKIQKGPAKTKKLKVETRQ- 63

Query: 107  LGSLFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
                     S K  R   +I  ++++  GM++ G V EVNE +L I LP GL+G  +  +
Sbjct: 64   ---------SSKFVREKFEILNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTE 114

Query: 166  ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
              D   +  NE  A E+ L     LP +F  G LV C+V  LD  K    K+ + LSL  
Sbjct: 115  ICDAYTEKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTKG--SKKNVMLSLNP 172

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + + LS ET++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 173  KNVNRVLSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAK 232

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  ++  +  +R VV LS     VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 233  LKVGQYLNCLIEEVKGSRGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVT 292

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              G+ L FL++F+G VD  HL      T + N     ++V A +L V P +RAV L+L P
Sbjct: 293  PLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRP 347

Query: 394  YLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
              L    P + +   ++G + D   V       G    +      T AY   + ++  + 
Sbjct: 348  VFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKK 404

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKGKV+ + 
Sbjct: 405  TFKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIK 464

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
              G +V+    ++ L P  H+++  I  P KK+ VG E+  RVL    K+K++ +T KKT
Sbjct: 465  PHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKT 524

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+SKL  ++ Y +A   L THG+I +++ +GC V+FYN VQG  PR EL  +   +P S
Sbjct: 525  LVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPES 584

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDD------LVKLGSLVSGVVDVV 680
            +++ GQVVK  +++  P+  R+ LSF +   P +  E         V  G LV   V   
Sbjct: 585  VFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLVDVKVLEK 644

Query: 681  TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
            T + + V V+      G +PT HL+DH+ +  ++   ++ G    ++L L      +LL 
Sbjct: 645  TKDGLKVAVLPHNIP-GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLC 703

Query: 741  AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
             K +L+++ +  Q P   S IHP  ++ G+V NI + G FV+F   L+G AP++   D  
Sbjct: 704  RKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKF 763

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAM 855
                S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +          LEE+  +
Sbjct: 764  VTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 823

Query: 856  LQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAG 911
                 +  S L + +     G  ++ +V E  + G V+ F E   V G +   + +  AG
Sbjct: 824  RSLMSNRDSVLIQTLAEMTPGMALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAG 881

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              +E G   +A IL+V   +  V +SL    +        NR+A+K K+  +        
Sbjct: 882  QELEPGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSD-------- 925

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
              + AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+     
Sbjct: 926  --LQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEP 983

Query: 1031 SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 1071
              T   LLL ++  +   T    R                     KK +  +G +V   +
Sbjct: 984  GVTG--LLLAIEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTV 1041

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              IKP  + +    G  G IH + + DD   V  +  +  K+G+ VTAR+I      DMK
Sbjct: 1042 KSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMK 1097

Query: 1132 K-SFL-----------WELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYVYK 1173
               FL            ELS++PS L      T++      L +      GQ VT ++ K
Sbjct: 1098 TFKFLPISHPRFIRTIPELSVRPSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKK 1157

Query: 1174 --VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK--L 1229
              +  +W  + I+   + ++ +L ++     L+   ++F IG+A+   V+   +  K  L
Sbjct: 1158 SIMVKKWLEVEIAPDFRGRIPLLLTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKAFL 1217

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
               ++ P +                  + +G++  GR+ K+ +   GL V       GRV
Sbjct: 1218 CLSLIGPHK------------------LKKGEVAMGRVVKV-TPKEGLTVSFPFGRVGRV 1258

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
                + +      L  +   Q V+C VL  +  V     + LSLRS     S TN    S
Sbjct: 1259 SMFHVSDSYSETHLEDFVPQQVVRCYVLSAATPV-----LTLSLRS-----SRTNPETKS 1308

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVES 1407
               D     +  IEDL    +++G+VK+V   G  + L   +       ++S  +    +
Sbjct: 1309 KITDP---EINSIEDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNA 1365

Query: 1408 P-EKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            P ++  P GKL+  +VL +      VE++L
Sbjct: 1366 PYDRHLPEGKLLTAKVLRLNHQESLVELSL 1395



 Score =  259 bits (663), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 146/328 (44%), Positives = 220/328 (67%), Gaps = 6/328 (1%)

Query: 1598 EVNLDDEQPDMDNGISQNQGHTDEA--KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1655
            +V LD   P +      +    DE   +   +K ++  ++ EK++ E+E+   EE L++ 
Sbjct: 1542 DVGLDTLTPALPPHGDSSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRIEEALMDP 1601

Query: 1656 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1714
               P + ++F+RLV SSP+SS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKL
Sbjct: 1602 GRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL 1661

Query: 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1774
            N+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +
Sbjct: 1662 NVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNR 1719

Query: 1775 MIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833
            M+K+F+    VW++    LL++ + E    V+QRAL  LP+ +H+  I++ A LEF+ G 
Sbjct: 1720 MLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGD 1779

Query: 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1893
            A+R R++FE  LS YPKRTD+WS+Y+D  I+ G     R +FER I LSL PK+MKF FK
Sbjct: 1780 AERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFFK 1839

Query: 1894 KYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            +YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1840 RYLDYEKQHGSEKDVQAVKAKALEYVEA 1867



 Score = 70.9 bits (172), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1480
              +P +K++ +TLK    +T  +S++  ++   +   G    G I RV+ YG  +   N 
Sbjct: 509  LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 563

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            ++ GL    ELS ++V + E+++  G+ VKV +L  +  K R+ L  +
Sbjct: 564  DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 611



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 163/388 (42%), Gaps = 52/388 (13%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 453  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1179
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V +   
Sbjct: 509  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 557

Query: 1180 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--NKEKKLL--RLV 1233
            ++     ++  +    L + Y P      +  F+ G+ V   VL+   +KE+ LL  RL+
Sbjct: 558  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFT 1292
              P Q+G      +  +   +  +  G +V  ++  +     GL V + PH + G +   
Sbjct: 614  SDPKQEG------EGQSQKKKKAVSAGQLVDVKV--LEKTKDGLKVAVLPHNIPGFLPTA 665

Query: 1293 ELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1352
             L +   + PL             L        T H  L L  S + +       L + V
Sbjct: 666  HLSDHVTNGPL-------------LYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAV 712

Query: 1353 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1412
            +  G++ +   ++ P M++ G+VKN+   G F+     L      + LSD +V S    F
Sbjct: 713  EG-GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHF 771

Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
              G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 772  VEGQTVVAKVTNVDEEKQRMLLSLRLSD 799



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 167/436 (38%), Gaps = 64/436 (14%)

Query: 1111 FKIGQTVTARIIAKSNKPDM----------KKSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
            FK G T   RII  S   ++          +  FLW   IKP  L   ++          
Sbjct: 411  FKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKV---------- 460

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
              +  +  G V K+  +   L  + HL A + I +           ++++H+G  V   V
Sbjct: 461  --LTIKPHGMVVKMGKQIRGLVPTMHL-ADILIKNP----------EKKYHVGDEVKCRV 507

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
            L  + + K L + L+          +   +D        G I+  R+        G +V+
Sbjct: 508  LLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFIL--RVKDY-----GCIVK 560

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1340
                + G V   EL    V DP S +  GQ VK  VL    +        LS R   D  
Sbjct: 561  FYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERML---LSFRLLSDPK 617

Query: 1341 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSN 1399
                           G+  +K + +S   +V   V   T  G  + +L   +   +  ++
Sbjct: 618  QEGE-----------GQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPTAH 666

Query: 1400 LSDGYVESPEKEFPIGKLVAG----RVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSN 1454
            LSD     P        L  G    RVL +    +RV +  K +  S         + S 
Sbjct: 667  LSDHVTNGP---LLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSE 723

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
            +H G ++IG +K ++ YG+F+    + L GL   + LS+  V +    +  G+ V  K+ 
Sbjct: 724  IHPGMLLIGFVKNIKDYGVFVQFP-SGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVT 782

Query: 1515 KVDKEKRRISLGMKSS 1530
             VD+EK+R+ L ++ S
Sbjct: 783  NVDEEKQRMLLSLRLS 798


>gi|383416723|gb|AFH31575.1| protein RRP5 homolog [Macaca mulatta]
          Length = 1871

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 401/1469 (27%), Positives = 682/1469 (46%), Gaps = 157/1469 (10%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIIEKVKGNGGVVSLSVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  ++
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVR 826

Query: 858  S--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
            S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  V
Sbjct: 827  SLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEV 886

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ  
Sbjct: 887  ESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ-- 929

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T
Sbjct: 930  -AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT 988

Query: 1034 AGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEI 1074
               LLL ++  +   T    R                     KK +  +G +V   +  I
Sbjct: 989  G--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSI 1046

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-S 1133
            KP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK   
Sbjct: 1047 KPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFK 1102

Query: 1134 FL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            FL            ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 FLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL- 1221

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                        I    ++    EG++  GR+ K+     GL V       G V    + 
Sbjct: 1222 ------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHVS 1264

Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1355
            +     PL  +   + V+C +L  + +V     + LSLR      SS  + +  + V+ P
Sbjct: 1265 DSYSETPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP 1313

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEF 1412
               +  I+D+    +++GYV ++   G F  L   +      S++S           K  
Sbjct: 1314 --EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHL 1371

Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            P GKL+  RVL +      VE++    D+
Sbjct: 1372 PEGKLLTARVLRLNHQKNLVELSFLPGDT 1400



 Score =  293 bits (750), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1677
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1562 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1621

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1622 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1679

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1797
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1680 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1739

Query: 1798 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1740 QAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1799

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1800 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1859

Query: 1917 EYVES 1921
            EYVE+
Sbjct: 1860 EYVEA 1864



 Score = 81.3 bits (199), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 46/326 (14%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +
Sbjct: 433  ---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVLTIKSYGMLVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S
Sbjct: 473  GEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLVES 528

Query: 1448 E---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++ 
Sbjct: 529  KLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFY 587

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ VKV +L  +  K R+ L  K S
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 188/463 (40%), Gaps = 57/463 (12%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1136
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
             LS++ S++    +         D+  G  V G V  + +   L+ +   ++  +     
Sbjct: 432  LLSLRTSIIEAQYLRYH------DIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLV----- 480

Query: 1197 AYEPSELQEF-----QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
               P  L +      ++++HIG  V   VL  + E K L + L+          +    D
Sbjct: 481  --PPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYAD 538

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                    G I+  R+        G +V+   ++ G V   EL    + DP   +  GQ 
Sbjct: 539  AKPGLQTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQV 591

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            VK  VL          + E S    L  +S   SSD     +  G   +K + ++   +V
Sbjct: 592  VKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLV 639

Query: 1372 QGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPL 1428
               V   T  G  + +L   + A +  S+LSD     P        G ++  RVL +   
Sbjct: 640  DVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQS 698

Query: 1429 SKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
               V +  K +   T    +   N S +H G ++IG +K ++ YG+FI    + L GL  
Sbjct: 699  EGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAP 757

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 758  KAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 41.6 bits (96), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1446 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1362

Query: 1499 IETIYRA----GEKVKVKILKVDKEKRRISL 1525
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|159129996|gb|EDP55110.1| rRNA biogenesis protein RRP5, putative [Aspergillus fumigatus A1163]
          Length = 1822

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 366/1336 (27%), Positives = 656/1336 (49%), Gaps = 152/1336 (11%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGTVVKGKIEKLLIGPAGVDGLIVTLADGIT-GLVPSMHFADTALQFPEKK--FREGM 610

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
                ++L ++ +   + L+ K SL+NS   +  D   I P S   G + NI   G  V+F
Sbjct: 611  TITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPHGAVVQF 670

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVSCKDP------ST 724

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHES----NDFGVVVSFEE 896
            F + +    EKI                 G  + G+V E  V +     ++FG++   + 
Sbjct: 725  FTETYRKAFEKIQ---------------PGLRVTGTVFEKSVDDVLLKLDEFGLIARLDL 769

Query: 897  HSDVYGFITHHQLAGATVESGSVIQ-AAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
               V G  +    A + +  G  +    +LD+ +A RL+ +S +           S ++A
Sbjct: 770  AHVVDGPESKQISALSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKA 819

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQ 1012
             K+       +D+     V   V  +  + L +        IG      ++D N  K P 
Sbjct: 820  AKQGSLPAKFEDIQEGAEVTGFVRNITSDGLFIEF--LGGIIGLVPKRLLADENVNK-PD 876

Query: 1013 KQFLNGQSVIATVMAL------------PSSSTAG----RLLLLLKAISETETSSSKRAK 1056
               +  Q V ATV ++            PS +T+            +  E   +  +  K
Sbjct: 877  YDMVKSQLVTATVHSIDRDFQRFILSMKPSEATSAGPKKPAPKPTPSNDEVTNAVDESIK 936

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIG 1114
              S +  G  V  ++  +K  ++ ++      GRI ++EV D   ++ +       F+  
Sbjct: 937  SMSDFTFGRTVNCKVVSVKATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFRPK 996

Query: 1115 QTVTARII----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQ 1165
            Q ++ARI+    A+S+K  P   +S    ++ELS+KPS L  +   S L  E+  V +G 
Sbjct: 997  QLISARILGIHDARSHKFLPISHRSGKFPVFELSVKPSFLQAAN-PSPLNLEQ--VQVGS 1053

Query: 1166 RVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
               G+V  V ++   + +S +++ +L  +D++ + S   + ++ F IG A+  HV +++ 
Sbjct: 1054 TWVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAAVDT 1113

Query: 1226 EKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285
            EK  L L  +     +S + + +           G I+ GR++K+      +++Q+   +
Sbjct: 1114 EKGRLDLTAKQRSSKLSFEDISV-----------GMILPGRVTKVTEK--QVIMQLSDTV 1160

Query: 1286 YGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1345
             G V+  +L +       + Y +   ++  V+ + +  +    + LSLR S         
Sbjct: 1161 VGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANK---KISLSLRPS--------- 1208

Query: 1346 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1405
              LS+ +      +  ++ L  N +V+G+VK V   G F+ L   + A V +S+LSD Y+
Sbjct: 1209 KVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDSYL 1268

Query: 1406 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1465
            +  +  F + +LV GRV  V+P   R++++LK S      ++ I  + +L VG  V G++
Sbjct: 1269 KEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPIT-MHDLKVGQFVTGKV 1327

Query: 1466 KRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1524
            ++VE +G FI I+ + N+ GLCH SE+++  VD+  T+Y  G+ VK KI+K+D+E  +IS
Sbjct: 1328 RKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKIIKIDRESGKIS 1387

Query: 1525 LGMKSSYFKNDADNLQMSSEEESDE---AIEEVGSYNRSSLLENSSVAVQ-------DMD 1574
              +K+S+FK+  +  +  S+EE D    +++ +G  +     ++             D++
Sbjct: 1388 FSLKASHFKDHDEEDESGSDEEGDSNGVSLDGMGGVDVEGSDDSEDDDDDDESMGGVDLE 1447

Query: 1575 MESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK 1634
             +SE  G      +E  ++    +  L     D    +  ++    ++ + DE N+R  K
Sbjct: 1448 EDSESDGGESDEDVEMTSAPVKRDGGLGATGFDWSGNVKDDEDEAMQSDSDDEDNSRKKK 1507

Query: 1635 KKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1694
            KK ++   Q  R  E   L+ + P++  ++ERL+   P+SS +W+KYMAF L + +VEKA
Sbjct: 1508 KKSRKPEIQVDRTGE---LDANGPQSVADYERLLLGEPDSSLLWLKYMAFQLELGEVEKA 1564

Query: 1695 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1754
            R IAERAL+TI+I ++ EKLNIWVA  NLEN YGN  ++++ +VF+RA QY D ++++  
Sbjct: 1565 REIAERALRTISIGQDTEKLNIWVALLNLENTYGN--DDSLDEVFKRACQYNDTQEIYDR 1622

Query: 1755 LLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLS 1811
            +  +Y ++ +N+ ADEL    + KK  ++ K +L     L       +  ++++ RAL S
Sbjct: 1623 MTSIYIQSGKNEKADELFQTALKKKISNTPKFFLNYASFLFDSMAAPDRARSLLPRALQS 1682

Query: 1812 LPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1869
            LP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI+ GD +
Sbjct: 1683 LPSHTHVELTSKFGQLEFRSPNGDVERGRTVFEGLLSSFPKRVDLWNVLLDLEIKNGDAE 1742

Query: 1870 LIRGLFERAISL-------------------SLPPKKMKFLFKKYLEYEKSV-----GEE 1905
             +R LFER + +                    L PK+ KF FKK+L +E+ +     G+E
Sbjct: 1743 QVRRLFERVLGIRDAKKGAAAAVATPTDASKKLRPKQAKFFFKKWLSFEEKLAAANGGDE 1802

Query: 1906 ERIEYVKQKAMEYVES 1921
            + +E +K +A +YV+S
Sbjct: 1803 KMVEEIKARAADYVKS 1818



 Score =  187 bits (476), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 224/913 (24%), Positives = 387/913 (42%), Gaps = 92/913 (10%)

Query: 3   ASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSL 62
           A +R+ QK+    G +     K+Q K    +    ++  +L +  DD+ P FPRGGG  L
Sbjct: 14  AVTRQPQKRVRVGGAE---QGKDQKKQRTSESTSDLKPTELTVLRDDE-PSFPRGGGSVL 69

Query: 63  TQRERDEIHAEVDAEFEAVERGLHKKNKK--------KKKKTERKANETVDDLGSLFGDG 114
           T  E+ +IH +   +    ++G  K +            +  + + N T   L       
Sbjct: 70  TPLEKKQIHIQATKDVLFEQKGSKKSSDNFAVGDDDEDIEMDDAEDNATSTKLSRKRKAK 129

Query: 115 ISGKLPRYANK--------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
              +    AN+        +  K I  G  + G V+ +N  D+ + LP  L G      A
Sbjct: 130 SKKRAKEEANEKQGVRIEGLNFKRIVPGSMVLGQVSSINAHDIGLSLPNNLTGYVPLT-A 188

Query: 167 LDPILDNEIEAN-EDNLLPTI-----------------FHVGQLVSCIVLQLDD---DKK 205
           +   LD +IE    DN                      F++GQ +   V+ +     D  
Sbjct: 189 VSKKLDEKIEKILNDNDNEDSDAEEEDGDDDSLDLTDYFYLGQYLRASVVSVGSNAADAP 248

Query: 206 EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPR 263
              K++I LS+       GLS   ++    + A V S+EDHG ++  G+      GF+ +
Sbjct: 249 SKNKKRIELSVDPRQANAGLSKSDLEVNTAIQASVVSVEDHGLVMDLGIEGADVKGFMSK 308

Query: 264 NNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLV 320
             +   +    +K G +   +V   +    VV LS++  +              +I+  +
Sbjct: 309 KEIDPKTDYSSIKEGSVFLCMVTGQNANGSVVKLSANLQSAGSIKKSHYLSTASTINSFL 368

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG      +  +  +G++   +     TVD+          +    +    K+  RI+  
Sbjct: 369 PGTAAEILLTEVSSSGLIGKIMGMLDATVDLVQSGGNSGKDDLTKKFQMGAKIKGRIVCT 428

Query: 381 DPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            P S    VG ++  ++L        P +      +  I  ++KVV VD G+G+ + + S
Sbjct: 429 FPASEPFKVGFSILDHVLKFATEGHGPGTSEDAPAISAIIPETKVVMVDPGMGVYVQMGS 488

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           T      +V +S +A+ +V  +  +   ++  S    R++G+   +GL     +    E 
Sbjct: 489 T--KHVGFVHVSRLADGKVEHIAPEHGPFRIDSVHEARVVGYSAFDGLYLLSFERKVIEQ 546

Query: 489 LVFTHSDVKPGMVVKGKV-------IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
                 DV  G VVKGK+         VD  G IV    G+  L P  H ++  +  P K
Sbjct: 547 PFLRLEDVTVGTVVKGKIEKLLIGPAGVD--GLIVTLADGITGLVPSMHFADTALQFPEK 604

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           KF+ G  +  R+L V  + ++I +T KK+L+ S+ AI   Y +      + G I  I+ H
Sbjct: 605 KFREGMTITARILSVNLQKRQIRLTLKKSLLNSESAIWKDYQDIVPGSQSPGTIVNIQPH 664

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
           G  V+FY  V+GF P SE+      +PS  +  GQVV    +S  PA  ++ +S    P+
Sbjct: 665 GAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRQGQVVNVHALSVDPALGKLAVS-CKDPS 723

Query: 660 RVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
             +E      + ++ G  V+G V   + + V++ +   G     +   H+ D  E   + 
Sbjct: 724 TFTETYRKAFEKIQPGLRVTGTVFEKSVDDVLLKLDEFGLI-ARLDLAHVVDGPESKQIS 782

Query: 715 K-SVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
             S I+ G + + LLVLD + +  L+  SA+ SL  +A+Q  LP+    I   + V G+V
Sbjct: 783 ALSKIRVGQKLNDLLVLDIQRARRLIKVSARASLKKAAKQGSLPAKFEDIQEGAEVTGFV 842

Query: 770 CNIIETGCFVRFLGRLTGFAPR----SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            NI   G F+ FLG + G  P+     + V+    D+ K+  V  +V S    ++ +  R
Sbjct: 843 RNITSDGLFIEFLGGIIGLVPKRLLADENVNKPDYDMVKSQLVTATVHS----IDRDFQR 898

Query: 826 ITLSLKQSCCSST 838
             LS+K S  +S 
Sbjct: 899 FILSMKPSEATSA 911



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 142/315 (45%), Gaps = 39/315 (12%)

Query: 541  KKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            K F +G+ L   V  V ++  R+ +T K+    SKL    S+ + +  +I  G +TK+ +
Sbjct: 1096 KHFPIGSALKVHVAAVDTEKGRLDLTAKQR--SSKL----SFEDISVGMILPGRVTKVTE 1149

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
                ++  + V G     +L  D      ++YH   V++  ++    A+++I+LS  ++P
Sbjct: 1150 KQVIMQLSDTVVGAVNLIDLADDYSKANPTVYHKNDVLRACVVGVDKANKKISLS--LRP 1207

Query: 659  TRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLA 705
            ++V    L            +K+  +V G V  V  + + V +   G+     +    L+
Sbjct: 1208 SKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTL---GHDVTAYVRVSDLS 1264

Query: 706  DHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
            D     + +K   K  ++ DQL+     V+D E   L +S K S+++   + P     + 
Sbjct: 1265 D-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLK 1318

Query: 761  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
                V G V  + E G F+       ++G   RS+  D +  D    Y  G  V++ I+ 
Sbjct: 1319 VGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKIIK 1378

Query: 819  VNSETGRITLSLKQS 833
            ++ E+G+I+ SLK S
Sbjct: 1379 IDRESGKISFSLKAS 1393



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 169/382 (44%), Gaps = 51/382 (13%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 992  FFRPKQLISARILGIHDARSHKFLPISHRSGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1051

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1052 GSTWVGFVNNVADDCLWINLS-PNVRGRLRFMDASDDLSLFADVEKHFPIGSALKVHVAA 1110

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + L++   + SK   +D   IS+ +++PG     RV  + E  V++       
Sbjct: 1111 VDTEKGRLDLTAKQRS-SKLSFED---ISVGMILPG-----RVTKVTEKQVIMQLSDTVV 1161

Query: 347  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---- 402
            G V++  L + +   N    Y+++  + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1162 GAVNLIDLADDYSKAN-PTVYHKNDVLRACVVGVDKANKKISLSLRPSKVLSSSLPVQDP 1220

Query: 403  -----SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
                   +KV D+  +  V RV D GL + L    T     AYV +SD+++  +++ +  
Sbjct: 1221 EITSMKQLKVNDVV-RGFVKRVADSGLFVTLGHDVT-----AYVRVSDLSDSYLKEWKDS 1274

Query: 457  YKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFG 513
            ++    V+ R+      +G     LK S  +       T  D+K G  V GKV  V+ FG
Sbjct: 1275 FQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQFVTGKVRKVEEFG 1334

Query: 514  A--IVQFPGGVKALCPLPHMSE 533
            A  ++     +  LC    M++
Sbjct: 1335 AFIVIDRSANISGLCHRSEMAD 1356



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G V  V +  L I L   +RG  R  DA D + L  ++E +      
Sbjct: 1044 LNLEQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRFMDASDDLSLFADVEKH------ 1097

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D +K   G+  +    R S     LS E +  GM+L   V  + 
Sbjct: 1098 --FPIGSALKVHVAAVDTEK---GRLDLTAKQRSS----KLSFEDISVGMILPGRVTKVT 1148

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   +LA++      P +     +L+  V  +D+  K + LS  
Sbjct: 1149 EKQVIMQLS-DTVVGAVNLIDLADDYS-KANPTVYHKNDVLRACVVGVDKANKKISLSLR 1206

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L ++
Sbjct: 1207 PSKVLSSSLPVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVTLGHDVTAYVRVSDLSDS 1266

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQ 413
            +    WK+ +   + V  R+  VDP    + ++L   +L    +AP +   +KVG  +  
Sbjct: 1267 Y-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQMSLKESVLDPEYKAPITMHDLKVGQ-FVT 1324

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             KV +V+     ++   S  +S   +   S++A++ V      Y+EG  V+ +I+     
Sbjct: 1325 GKVRKVEEFGAFIVIDRSANISGLCHR--SEMADKRVDDARTLYEEGDLVKAKIIKIDRE 1382

Query: 474  EGLATGILKASAFE 487
             G  +  LKAS F+
Sbjct: 1383 SGKISFSLKASHFK 1396


>gi|384945910|gb|AFI36560.1| protein RRP5 homolog [Macaca mulatta]
          Length = 1871

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 401/1469 (27%), Positives = 682/1469 (46%), Gaps = 157/1469 (10%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIIEKVKGNGGVVSLSVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  ++
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVR 826

Query: 858  S--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
            S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  V
Sbjct: 827  SLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEV 886

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ  
Sbjct: 887  ESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ-- 929

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T
Sbjct: 930  -AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT 988

Query: 1034 AGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEI 1074
               LLL ++  +   T    R                     KK +  +G +V   +  I
Sbjct: 989  G--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSI 1046

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-S 1133
            KP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK   
Sbjct: 1047 KPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFK 1102

Query: 1134 FL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            FL            ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 FLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL- 1221

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                        I    ++    EG++  GR+ K+     GL V       G V    + 
Sbjct: 1222 ------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHVS 1264

Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1355
            +     PL  +   + V+C +L  + +V     + LSLR      SS  + +  + V+ P
Sbjct: 1265 DSYSETPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP 1313

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEF 1412
               +  I+D+    +++GYV ++   G F  L   +      S++S           K  
Sbjct: 1314 --EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHL 1371

Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            P GKL+  RVL +      VE++    D+
Sbjct: 1372 PEGKLLTARVLRLNHQKNLVELSFLPGDT 1400



 Score =  292 bits (748), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1677
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1562 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1621

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1622 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1679

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1797
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1680 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLQRS 1739

Query: 1798 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1740 QAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1799

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1800 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1859

Query: 1917 EYVES 1921
            EYVE+
Sbjct: 1860 EYVEA 1864



 Score = 81.3 bits (199), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 46/326 (14%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +
Sbjct: 433  ---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVLTIKSYGMLVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S
Sbjct: 473  GEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLVES 528

Query: 1448 E---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++ 
Sbjct: 529  KLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFY 587

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ VKV +L  +  K R+ L  K S
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 188/463 (40%), Gaps = 57/463 (12%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1136
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
             LS++ S++    +         D+  G  V G V  + +   L+ +   ++  +     
Sbjct: 432  LLSLRTSIIEAQYLRYH------DIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLV----- 480

Query: 1197 AYEPSELQEF-----QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
               P  L +      ++++HIG  V   VL  + E K L + L+          +    D
Sbjct: 481  --PPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYAD 538

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                    G I+  R+        G +V+   ++ G V   EL    + DP   +  GQ 
Sbjct: 539  AKPGLQTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQV 591

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            VK  VL          + E S    L  +S   SSD     +  G   +K + ++   +V
Sbjct: 592  VKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLV 639

Query: 1372 QGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPL 1428
               V   T  G  + +L   + A +  S+LSD     P        G ++  RVL +   
Sbjct: 640  DVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQS 698

Query: 1429 SKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
               V +  K +   T    +   N S +H G ++IG +K ++ YG+FI    + L GL  
Sbjct: 699  EGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAP 757

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 758  KAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1446 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1362

Query: 1499 IETIYRA----GEKVKVKILKVDKEKRRISL 1525
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|40352805|gb|AAH64486.1| PDCD11 protein [Homo sapiens]
 gi|51593565|gb|AAH80560.1| PDCD11 protein, partial [Homo sapiens]
          Length = 1434

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 402/1473 (27%), Positives = 681/1473 (46%), Gaps = 165/1473 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLSLT 1222

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+     GL V       G V    +
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHM 1263

Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
             +     PL  +   + V+C +L  +  V     + LSLR      SS  + +  + V+ 
Sbjct: 1264 SDSYSETPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVED 1312

Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--- 1411
            P   +  I+D+    +++GYV ++   G F  L   +      S++S     SP K+   
Sbjct: 1313 P--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQ---HSPSKKALY 1367

Query: 1412 ---FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
                P GKL+  RVL +      VE++    D+
Sbjct: 1368 NKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 149/326 (45%), Gaps = 46/326 (14%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +
Sbjct: 433  ---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVLTIKSYGMLVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S
Sbjct: 473  GEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLIES 528

Query: 1448 E---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++ 
Sbjct: 529  KLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFY 587

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ VKV +L  +  K R+ L  K S
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 61.6 bits (148), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 161/724 (22%), Positives = 274/724 (37%), Gaps = 121/724 (16%)

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 1025
             V Q +N IVE VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIVEKVKGNGGVVSL-----SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQV 288

Query: 1026 MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 1076
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVHLSL 345

Query: 1077 ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 1100
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 1101 SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1158
                 N+F+   FK G T   RII  S   +     L  LS++ S++             
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQ------YLRY 447

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-----QRRFHIG 1213
             D+  G  V G V  + +   L+ +   ++  +        P  L +      ++++HIG
Sbjct: 448  HDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLV-------PPMHLADILMKNPEKKYHIG 500

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
              V   VL  + E K L + L+          +    D        G I+  R+      
Sbjct: 501  DEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFII--RVKDY--- 555

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1333
              G +V+   ++ G V   EL    + DP   +  GQ VK  VL          + E S 
Sbjct: 556  --GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVL----------NCEPSK 603

Query: 1334 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLD 1392
               L  +S   SSD     +  G   +K + ++   +V   V   T  G  + +L   + 
Sbjct: 604  ERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIR 661

Query: 1393 AKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE-I 1449
            A +  S+LSD     P        G ++  RVL +     RV +  K +   T    +  
Sbjct: 662  AFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGRVLLCRKPALVSTVEGGQDP 720

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
             N S +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V
Sbjct: 721  KNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 779

Query: 1510 KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA 1569
              K+  VD+EK+R+ L ++ S       +L ++S    ++ +EE+    RS +    SV 
Sbjct: 780  AAKVTNVDEEKQRMLLSLRLS--DCGLGDLAITSLLLLNQCLEELQGV-RSLMSNRDSVL 836

Query: 1570 VQDM 1573
            +Q +
Sbjct: 837  IQTL 840



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 118/246 (47%), Gaps = 35/246 (14%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G  S+ +  L   +  P K LE+ E      +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKTF-LCLSLTGPHK-LEEGE------VAMGRVVKVTPNEGLTV 1248

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V + ++SD Y E+P ++F   K+V   +LS       + ++L++S +   +
Sbjct: 1249 SFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPET 1306

Query: 1446 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
            +S     EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  + +
Sbjct: 1307 KSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPSKK 1364

Query: 1501 TIYRA----GEKVKVKILKVDKEKRRISLGMKSSYFKNDA---DNL------QMSSEEES 1547
             +Y      G+ +  ++L+++ +K  + L    S+   D    D L      Q++ +EE 
Sbjct: 1365 ALYNKHLPEGKLLTARVLRLNHQKNLVEL----SFLPGDTGKPDVLSASLEGQLTKQEER 1420

Query: 1548 DEAIEE 1553
                EE
Sbjct: 1421 KTEAEE 1426


>gi|29436556|gb|AAH49838.1| PDCD11 protein, partial [Homo sapiens]
          Length = 1436

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 403/1473 (27%), Positives = 682/1473 (46%), Gaps = 165/1473 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            +             ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K LL L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLT 1222

Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
             P +                  + EG++  GR+ K+     GL V       G V    +
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHM 1263

Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
             +     PL  +   + V+C +L  +  V     + LSLR      SS  + +  + V+ 
Sbjct: 1264 SDSYSETPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVED 1312

Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--- 1411
            P   +  I+D+    +++GYV ++   G F  L   +      S++S     SP K+   
Sbjct: 1313 P--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQ---HSPSKKALY 1367

Query: 1412 ---FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
                P GKL+  RVL +      VE++    D+
Sbjct: 1368 NKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400



 Score = 76.3 bits (186), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 149/326 (45%), Gaps = 46/326 (14%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +
Sbjct: 433  ---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVLTIKSYGMLVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S
Sbjct: 473  GEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLIES 528

Query: 1448 E---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++ 
Sbjct: 529  KLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFY 587

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ VKV +L  +  K R+ L  K S
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 161/724 (22%), Positives = 275/724 (37%), Gaps = 121/724 (16%)

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 1025
             V Q +N IVE VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIVEKVKGNGGVVSL-----SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQV 288

Query: 1026 MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 1076
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVHLSL 345

Query: 1077 ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 1100
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 1101 SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1158
                 N+F+   FK G T   RII  S   +     L  LS++ S++    +        
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQYLRYH----- 448

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-----QRRFHIG 1213
             D+  G  V G V  + +   L+ +   ++  +        P  L +      ++++HIG
Sbjct: 449  -DIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLV-------PPMHLADILMKNPEKKYHIG 500

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
              V   VL  + E K L + L+          +    D        G I+  R+      
Sbjct: 501  DEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFII--RVKDY--- 555

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1333
              G +V+   ++ G V   EL    + DP   +  GQ VK  VL          + E S 
Sbjct: 556  --GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVL----------NCEPSK 603

Query: 1334 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLD 1392
               L  +S   SSD     +  G   +K + ++   +V   V   T  G  + +L   + 
Sbjct: 604  ERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIR 661

Query: 1393 AKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE-I 1449
            A +  S+LSD     P        G ++  RVL +     RV +  K +   T    +  
Sbjct: 662  AFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGRVLLCRKPALVSTVEGGQDP 720

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
             N S +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V
Sbjct: 721  KNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 779

Query: 1510 KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA 1569
              K+  VD+EK+R+ L ++ S       +L ++S    ++ +EE+    RS +    SV 
Sbjct: 780  AAKVTNVDEEKQRMLLSLRLS--DCGLGDLAITSLLLLNQCLEELQGV-RSLMSNRDSVL 836

Query: 1570 VQDM 1573
            +Q +
Sbjct: 837  IQTL 840



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 118/246 (47%), Gaps = 35/246 (14%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G  S+ +  L   +  P K LE+ E      +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKTL-LCLSLTGPHK-LEEGE------VAMGRVVKVTPNEGLTV 1248

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V + ++SD Y E+P ++F   K+V   +LS       + ++L++S +   +
Sbjct: 1249 SFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPET 1306

Query: 1446 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
            +S     EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  + +
Sbjct: 1307 KSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPSKK 1364

Query: 1501 TIYRA----GEKVKVKILKVDKEKRRISLGMKSSYFKNDA---DNL------QMSSEEES 1547
             +Y      G+ +  ++L+++ +K  + L    S+   D    D L      Q++ +EE 
Sbjct: 1365 ALYNKHLPEGKLLTARVLRLNHQKNLVEL----SFLPGDTGKPDVLSASLEGQLTKQEER 1420

Query: 1548 DEAIEE 1553
                EE
Sbjct: 1421 KTEAEE 1426


>gi|115388025|ref|XP_001211518.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195602|gb|EAU37302.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1798

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 378/1377 (27%), Positives = 659/1377 (47%), Gaps = 161/1377 (11%)

Query: 630  YHVGQVVKCRIMSSIPASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVD--VVTPN 683
            +  G V + R++          LSF    + +P    ED  V +G++V G ++  ++   
Sbjct: 494  FQTGSVHEARVIGYNALDNLYLLSFERQVIDQPFLRLED--VTVGAVVKGKIEKLLIGAG 551

Query: 684  AV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLS 740
             V  ++  +A G + G +P+ H AD        K   + G     ++L ++ E   + L+
Sbjct: 552  GVDGLIVSLADGIT-GLVPSMHFADAPLQFPEKK--FREGMTVSARILSVNLEKRQIRLT 608

Query: 741  AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 800
             K SL+NS   +  D   I P +   G + NI   G  V+F G + GF P S+  +    
Sbjct: 609  LKKSLLNSESAIWKDYESIVPGAQSPGTIVNIQPHGAVVQFYGSVRGFLPVSEMSEAYIK 668

Query: 801  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 860
            D S+ + +GQ V  + L V + +GR+ +S K       D S   E +             
Sbjct: 669  DPSQHFRLGQVVSVHALSVEAASGRLAVSCK-------DPSTFTESYR------------ 709

Query: 861  HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
                  K  E    G ++ G V E +   V++  +E   V      H   G+  +  S +
Sbjct: 710  ------KAFENIRPGLLVTGTVFEKSSDDVLLKLDEFGLVARLTLEHVSDGSLSKQNSTL 763

Query: 921  QAA----------ILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
                         +LD+ +  RL+ +S +           S ++A K+    E  +D+  
Sbjct: 764  SKIRVGQKLNDLLVLDIQRGRRLIKVSGRA----------SLKKAVKQGLIPENFEDVQE 813

Query: 971  HQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL- 1028
               V   +  I  +   V  L      +    V D N  K P       Q V ATV ++ 
Sbjct: 814  GSDVTGFIRNITLDGVFVEFLGGLIGLVPKRLVGDENITK-PSFGMTKSQIVTATVHSID 872

Query: 1029 -----------PSSST-AGRLLLLLKAISETETSSSKRAKK-------KSSYDVGSLVQA 1069
                       P+ +T AG    + K   +   S    A          S +  G +V+ 
Sbjct: 873  VDFRRFILSMNPAEATRAGAKKPVAKTTPKATPSDDAVANAVDDGVSTMSDFSFGRVVKC 932

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIAKSNK 1127
            ++  +K  ++ ++      GRI ++EV D   ++ +       F+  Q ++ARI+   + 
Sbjct: 933  KVVSVKATQVNVQLADNIQGRIDVSEVFDKLDDIKDRKQPLRFFRTKQVISARILGIHDA 992

Query: 1128 PDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEW 1178
             + K         K  ++ELS+KPS L  S   + L  E+  V +G    G++  V ++ 
Sbjct: 993  RNHKFLPISHRTGKYPVFELSVKPSYLKASN-PTPLNLEQ--VQVGSSWLGFINNVADDC 1049

Query: 1179 ALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
              + +S +++ +L  +D++ + S L + ++ F +G AV  HV +++ +K  L L  +   
Sbjct: 1050 LWVNLSPNVRGRLRFMDASDDLSLLADVEKNFPVGSAVKVHVTAVDSQKGRLDLSAKRRS 1109

Query: 1239 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
            D +S   + +           G I+ GR++K+      +++Q+   + G V   ++ +  
Sbjct: 1110 DKLSFSDISV-----------GMILPGRVTKVTERQ--VIMQLTDTIVGAVDLIDMADDY 1156

Query: 1299 VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1358
                 + Y + + ++  V+ + +  +    + LSLR S           LS+ +    + 
Sbjct: 1157 TKANPTIYQKNEVLRACVVAVDKANK---KISLSLRPS---------KVLSSSLPVQDRE 1204

Query: 1359 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1418
            +  ++DL  N +V+G+V+ V   G F+ +   +   V +S+LSD Y++  +  F   +LV
Sbjct: 1205 ITSMKDLKVNDVVRGFVRRVADSGLFVTVGHGVTVYVRVSDLSDSYLKEWKDSFQADQLV 1264

Query: 1419 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1478
             GR+  V+P   +++++LK S      ++ +  LS+L  G IV G++++VE +G FI I+
Sbjct: 1265 KGRITVVDPEHNKLQMSLKDSVLDPDYKAPLT-LSDLKPGQIVTGKVRKVEEFGAFIVID 1323

Query: 1479 NT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1537
             + N+ GLCH SE++E  VD+  T++  G+ VK KI+K+D+E+ ++S G+K+SYF N  +
Sbjct: 1324 RSANISGLCHRSEMAEKRVDDARTLFEEGDAVKAKIIKIDREQGKVSFGLKASYFDNGEE 1383

Query: 1538 NLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPL 1597
            + + S +E+  E +    S +    +E      +D D +   GG  +     S +     
Sbjct: 1384 DGESSGDEDESEGV----SLDGFGGMEVDGSDEEDDDSDMSMGGIDIEGDSGSDSGSDES 1439

Query: 1598 EVNLDDEQPDMDNG--------ISQN-QGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAA 1648
            +     + P    G         S N Q   DEA   D  ++  ++KK K+ R+ EI+  
Sbjct: 1440 DEEEGAKAPSKQKGGLGSGGFDWSGNVQDDEDEAMGSDSDDDEESRKKRKKHRKPEIQVD 1499

Query: 1649 EERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1708
                L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEK R IAERAL+TI I 
Sbjct: 1500 RTGELDANGPQSVADYERLLLGEPDSSQLWLQYMAFQLELGEVEKTREIAERALRTITIG 1559

Query: 1709 EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLA 1768
            ++ EKLNIWVA  NLEN YGN  ++ +  VF+RA QY D ++V+  ++ +Y ++ +N+ A
Sbjct: 1560 QDAEKLNIWVALLNLENTYGN--DDTLEDVFKRACQYNDTQEVYERMISIYIQSGKNEKA 1617

Query: 1769 DELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTA 1825
            DEL    + KK  HS K +L     L       E  +A++ RAL SLP H H++  S+  
Sbjct: 1618 DELFQTALKKKIFHSSKFYLNYASFLFDTMADPERGRALLPRALQSLPSHTHVETTSKFG 1677

Query: 1826 ILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-- 1881
             LEF+  NG  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R LFER + +  
Sbjct: 1678 QLEFRSANGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKAGDAEQVRRLFERVLGIRD 1737

Query: 1882 ------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYVES 1921
                         L PK+ +F FKK+L +E+ +     G E+ +E +K KA +YV+S
Sbjct: 1738 TKKGAVSVEESKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKAKAADYVKS 1794



 Score =  189 bits (480), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 230/902 (25%), Positives = 390/902 (43%), Gaps = 82/902 (9%)

Query: 2   AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQ-INDAVEAQDLALPPDDDVPVFPRGGGH 60
           AA    S +K ++ G      + ++ +N KKQ   DA +A +L +  +D+ P FPRGGG 
Sbjct: 10  AAEDASSAQKRARVG------ADDRKQNQKKQNTGDAPKASELTVLREDE-PSFPRGGGS 62

Query: 61  SLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGK 118
            LT  ER +I   A  D  FE         + +   + E    E VDD  +         
Sbjct: 63  VLTPLERKQIQIQATKDVLFEQKGAKGPSADFEDGDQDEDAEMEDVDDTTTTKKSRKRKS 122

Query: 119 LPRYANKITLKNISAGMKLWGV---VAEVNEKDLVICLPGGLRGLARAADALDPILDNEI 175
             +   K   K    G+++ G+   V+ +N  ++ + LP  L G      A+   L+ +I
Sbjct: 123 KGKKDAKADAKE--KGVRVEGLNFKVSSINAHNIGLSLPNNLTGYVPLT-AISKKLEQKI 179

Query: 176 E---------------ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLR 217
           E                ++   L   F++GQ +   V+ +  D  +     +++I LS+ 
Sbjct: 180 EDILKDDGSDDDDEDSEDDSLDLGKYFYLGQYLRAYVVSVGSDSADARSKHRKRIELSVD 239

Query: 218 LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGID-- 273
                 GL+   +   + + A V S+EDHG ++  G+      GF+    +  +  ID  
Sbjct: 240 PRQANSGLTKSDIVTNIAVQASVLSVEDHGLVMDLGIEGSDVKGFMSSKEI--DPKIDYS 297

Query: 274 -VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRV 329
            +K G +   +V   +    V+ LS++ ++ S  + K        +I+  VPG      +
Sbjct: 298 NIKEGSVFLCMVTGQNANGSVIKLSANLNS-SGSIKKSHYLSSAPTINSFVPGTAAEILL 356

Query: 330 QSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--V 387
             +  NG+    +     TVD+          + +  +    KV  R++   P S    V
Sbjct: 357 TEVSSNGIAGKIMGMLDATVDLVQSGGNSGKDDLEKKFKIGAKVKGRLVCTFPASEPYKV 416

Query: 388 GLTLNPYLLH----NRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYV 440
           G +L  ++         P S      V  I  ++KVV+VD GLG+ + I ST      +V
Sbjct: 417 GFSLLDHVCKFTSDGNGPGSSDDAPAVSAIVQEAKVVKVDPGLGVYVQIGST--KHIGFV 474

Query: 441 TISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
            +S +A+ +V  + +    ++ GS    R++G+  L+ L     +    +       DV 
Sbjct: 475 HVSRLADGQVETITEDHGPFQTGSVHEARVIGYNALDNLYLLSFERQVIDQPFLRLEDVT 534

Query: 498 PGMVVKGKV-------IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
            G VVKGK+         VD  G IV    G+  L P  H ++  +  P KKF+ G  + 
Sbjct: 535 VGAVVKGKIEKLLIGAGGVD--GLIVSLADGITGLVPSMHFADAPLQFPEKKFREGMTVS 592

Query: 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            R+L V  + ++I +T KK+L+ S+ AI   Y        + G I  I+ HG  V+FY  
Sbjct: 593 ARILSVNLEKRQIRLTLKKSLLNSESAIWKDYESIVPGAQSPGTIVNIQPHGAVVQFYGS 652

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---- 664
           V+GF P SE+      +PS  + +GQVV    +S   AS R+ +S    P+  +E     
Sbjct: 653 VRGFLPVSEMSEAYIKDPSQHFRLGQVVSVHALSVEAASGRLAVS-CKDPSTFTESYRKA 711

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGY 722
            + ++ G LV+G V   + + V++ +   G     +  EH++D  L       S I+ G 
Sbjct: 712 FENIRPGLLVTGTVFEKSSDDVLLKLDEFGLV-ARLTLEHVSDGSLSKQNSTLSKIRVGQ 770

Query: 723 EFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCF 778
           + + LLVLD +    L+  S + SL  + +Q  +P +   +   S V G++ NI   G F
Sbjct: 771 KLNDLLVLDIQRGRRLIKVSGRASLKKAVKQGLIPENFEDVQEGSDVTGFIRNITLDGVF 830

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V FLG L G  P+    D      S      Q V + +  ++ +  R  LS+  +  +  
Sbjct: 831 VEFLGGLIGLVPKRLVGDENITKPSFGMTKSQIVTATVHSIDVDFRRFILSMNPAEATRA 890

Query: 839 DA 840
            A
Sbjct: 891 GA 892



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 106/478 (22%), Positives = 202/478 (42%), Gaps = 65/478 (13%)

Query: 90   KKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDL 149
            KK   KT  KA  + D + +   DG+S          T+ + S G  +   V  V    +
Sbjct: 893  KKPVAKTTPKATPSDDAVANAVDDGVS----------TMSDFSFGRVVKCKVVSVKATQV 942

Query: 150  VICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKK---- 205
             + L   ++G    ++  D +  ++I+  +  L    F   Q++S  +L + D +     
Sbjct: 943  NVQLADNIQGRIDVSEVFDKL--DDIKDRKQPL--RFFRTKQVISARILGIHDARNHKFL 998

Query: 206  ----EIGKRKIW-LSLRLSLLYKG----LSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
                  GK  ++ LS++ S L       L+LE VQ G     ++ ++ D    ++   P+
Sbjct: 999  PISHRTGKYPVFELSVKPSYLKASNPTPLNLEQVQVGSSWLGFINNVADDCLWVNLS-PN 1057

Query: 257  FTGFLPRNNLAENSGI--DVKPGLLLQGVVR----SIDRTRKVVYLSSD--PDTVSKCVT 308
              G L   + +++  +  DV+    +   V+    ++D  +  + LS+    D +S    
Sbjct: 1058 VRGRLRFMDASDDLSLLADVEKNFPVGSAVKVHVTAVDSQKGRLDLSAKRRSDKLS---- 1113

Query: 309  KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 368
                 IS+ +++PG     RV  + E  V++       G VD+  + + +   N    Y 
Sbjct: 1114 --FSDISVGMILPG-----RVTKVTERQVIMQLTDTIVGAVDLIDMADDYTKAN-PTIYQ 1165

Query: 369  QHKKVNARILFVDPTSRAVGLTLNPY-LLHNRAPPSHVKVGDIYDQSKVVRVDRGL---- 423
            +++ + A ++ VD  ++ + L+L P  +L +  P    ++  + D  KV  V RG     
Sbjct: 1166 KNEVLRACVVAVDKANKKISLSLRPSKVLSSSLPVQDREITSMKDL-KVNDVVRGFVRRV 1224

Query: 424  ---GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
               GL + +         YV +SD+++  +++ +  ++    V+ RI             
Sbjct: 1225 ADSGLFVTVGH---GVTVYVRVSDLSDSYLKEWKDSFQADQLVKGRITVVDPEHNKLQMS 1281

Query: 481  LKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSE 533
            LK S  +       T SD+KPG +V GKV  V+ FGA  ++     +  LC    M+E
Sbjct: 1282 LKDSVLDPDYKAPLTLSDLKPGQIVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMAE 1339



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 157/374 (41%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G +  V +  L + L   +RG  R  DA D + L  ++E N      
Sbjct: 1027 LNLEQVQVGSSWLGFINNVADDCLWVNLSPNVRGRLRFMDASDDLSLLADVEKN------ 1080

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F VG  V   V  +D  K         L L        LS   +  GM+L   V  + 
Sbjct: 1081 --FPVGSAVKVHVTAVDSQKGR-------LDLSAKRRSDKLSFSDISVGMILPGRVTKVT 1131

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   ++A++      P +     +L+  V ++D+  K + LS  
Sbjct: 1132 ERQVIMQL-TDTIVGAVDLIDMADDY-TKANPTIYQKNEVLRACVVAVDKANKKISLSLR 1189

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L ++
Sbjct: 1190 PSKVLSSSLPVQDREITSMKDLKVNDVVRGFVRRVADSGLFVTVGHGVTVYVRVSDLSDS 1249

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN--RAPP--SHVKVGDIYDQ 413
            +    WK+ +   + V  RI  VDP    + ++L   +L    +AP   S +K G I   
Sbjct: 1250 Y-LKEWKDSFQADQLVKGRITVVDPEHNKLQMSLKDSVLDPDYKAPLTLSDLKPGQIV-T 1307

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             KV +V+     ++   S  +S   +   S++AE+ V      ++EG  V+ +I+     
Sbjct: 1308 GKVRKVEEFGAFIVIDRSANISGLCHR--SEMAEKRVDDARTLFEEGDAVKAKIIKIDRE 1365

Query: 474  EGLATGILKASAFE 487
            +G  +  LKAS F+
Sbjct: 1366 QGKVSFGLKASYFD 1379


>gi|426366071|ref|XP_004050088.1| PREDICTED: protein RRP5 homolog [Gorilla gorilla gorilla]
          Length = 1871

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 403/1475 (27%), Positives = 680/1475 (46%), Gaps = 169/1475 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IH   ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHAGMLLTGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAKMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQK 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITE 1073
            T   LLL ++  +   T    R                     KK +  +G +V   +  
Sbjct: 988  TG--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKS 1045

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            IKP  + +    G  G IH + + DD      +  +  K+G+ VTAR+I      DM K+
Sbjct: 1046 IKPTHVVVTLEDGIIGCIHASHILDDVPEGT-SATTKLKVGKMVTARVIGGR---DM-KT 1100

Query: 1134 FLW-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YK 1173
            F +             ELS++PS L    T     S    E+      GQ VT ++  Y 
Sbjct: 1101 FKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYN 1160

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L 
Sbjct: 1161 VVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTFLCLS 1220

Query: 1234 LR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
            L  P +                  + EG++  GR+ K+     GL V       G V   
Sbjct: 1221 LTGPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIF 1261

Query: 1293 ELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1352
             + +     PL  +   + V+C VL  +  V     + LSLR      SS  + +  + V
Sbjct: 1262 HMSDSYSETPLEDFVPQKVVRCYVLSTADNV-----LTLSLR------SSRTNPETKSKV 1310

Query: 1353 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE- 1411
            + P   +  I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+ 
Sbjct: 1311 EDP--EINSIQDIKEGQLLRGYVGSIRPHGVFFRLGPSV---VGLARYSHVSQHSPSKKA 1365

Query: 1412 -----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
                  P GKL+  RVL +      VE++    D+
Sbjct: 1366 LYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1400



 Score =  293 bits (750), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1677
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1562 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1621

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1622 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1679

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1797
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1680 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1739

Query: 1798 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            Q      V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1740 QAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1799

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +Y+D  I+ G    +RG+FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1800 VYIDMTIKHGSQKDVRGIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1859

Query: 1917 EYVES 1921
            EYVE+
Sbjct: 1860 EYVEA 1864



 Score = 79.7 bits (195), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 46/326 (14%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +
Sbjct: 433  ---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVLTIKSYGMLVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S
Sbjct: 473  GEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLIES 528

Query: 1448 E---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++ 
Sbjct: 529  KLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFY 587

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ VKV +L  +  K R+ L  K S
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 188/458 (41%), Gaps = 47/458 (10%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1136
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 384  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 431

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
             LS++ S++              D+  G  V G V  + +   L+ +   ++  +  +  
Sbjct: 432  LLSLRTSIIEAQ------YLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHL 485

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
            A     ++  ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 486  A--DILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGL 543

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
               G I+  R+        G +V+   ++ G V   EL    + DP   +  GQ VK  V
Sbjct: 544  QTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVV 596

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L          + E S    L  +S   SSD     +  G   +K + ++   +V   V 
Sbjct: 597  L----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVL 644

Query: 1377 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVE 1433
              T  G  + +L   + A +  S+LSD     P        G ++  RVL +     RV 
Sbjct: 645  EKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGRVL 703

Query: 1434 VTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            +  K +   T    +   N S +H G ++ G +K ++ YG+FI    + L GL   + +S
Sbjct: 704  LCRKPALVSTVEGGQDPKNFSEIHAGMLLTGFVKSIKDYGVFIQFP-SGLSGLAPKAIMS 762

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 763  DKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 800



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 101/209 (48%), Gaps = 22/209 (10%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKTF-LCLSLTGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1248

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V + ++SD Y E+P ++F   K+V   VLS       + ++L++S +   +
Sbjct: 1249 SFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYVLSTA--DNVLTLSLRSSRTNPET 1306

Query: 1446 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
            +S     EIN++ ++  G ++ G +  +  +G+F  +   ++VGL   S +S+ H  + +
Sbjct: 1307 KSKVEDPEINSIQDIKEGQLLRGYVGSIRPHGVFFRL-GPSVVGLARYSHVSQ-HSPSKK 1364

Query: 1501 TIYRA----GEKVKVKILKVDKEKRRISL 1525
             +Y      G+ +  ++L+++ +K  + L
Sbjct: 1365 ALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|67523381|ref|XP_659751.1| hypothetical protein AN2147.2 [Aspergillus nidulans FGSC A4]
 gi|40745035|gb|EAA64191.1| hypothetical protein AN2147.2 [Aspergillus nidulans FGSC A4]
 gi|259487526|tpe|CBF86270.1| TPA: rRNA biogenesis protein RRP5, putative (AFU_orthologue;
            AFUA_2G16040) [Aspergillus nidulans FGSC A4]
          Length = 1780

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 443/1754 (25%), Positives = 797/1754 (45%), Gaps = 264/1754 (15%)

Query: 311  LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV--------------------- 349
            ++G+S   LVPG ++  +V SI  + + +S     TG V                     
Sbjct: 144  IEGLSFKRLVPGALILGQVSSINAHNIGISLPNNLTGYVPLTSVSKTLESKIEKMLEEDE 203

Query: 350  ----------DIFHLQN---TFPTTNWKNDYNQHKKVNARI-LFVDPTSRAVGLTLNPYL 395
                      D F+L     T+  +      +   K   RI L +DP S   GL     +
Sbjct: 204  DSDEEEFDLHDYFYLGQYLRTYVVSVGNKSADASSKSKKRIELSIDPRSANTGLQKTDLV 263

Query: 396  LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
            ++     S V V D              GL++D+         +++  ++   + R    
Sbjct: 264  VNAAVQASVVSVED-------------HGLVMDLGIEGTDVRGFMSSKEI---DPRTDYS 307

Query: 456  KYKEGSCVRVRILGFRHLEG---------LATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
              KEGS     + G ++  G          ++G +K S F  +  T +   PG+  +  +
Sbjct: 308  TIKEGSVFLCMVTG-QNANGNVIKLSANLQSSGSIKKSHFLSVAPTINSFVPGVAAEILL 366

Query: 507  IAVDSFGAIVQFPGGVKALCPLPH----MSEFEIVKPGKKFKVGAELVFRVL----GVKS 558
              V S G I +  G +     L H      + ++ K   K+  GA++  R+     G + 
Sbjct: 367  TDVSSTGMIGKIMGMLDTTVDLVHSGGATGKTDLTK---KYHNGAKIKGRISCTFPGSEP 423

Query: 559  KRITVTH----KKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCFVRFYNGVQ-GF 612
             +I  +     +K   +      S  A A   +I    I  ++   G +V+  +    GF
Sbjct: 424  YKIGFSMLDHVQKFSAEGHGPNSSDDAPAISAVIPEATIVNVDPGLGVYVKIGSTKHMGF 483

Query: 613  APRSELGLDPGCEPSSMYH----VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
               S L  D   E  S  H    VG   + R++         +LSF  K   V     ++
Sbjct: 484  VHVSRLA-DGQVETISSDHGPFKVGTTHEARVVGYSAIDNLYSLSFERK---VINQPFLR 539

Query: 669  LGSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
            L  +  G V  VT   V+V           +  G + G IP+ H AD        K   +
Sbjct: 540  LEDVTLGAVVKVTITKVLVGESGVTGLIVSLTDGIT-GFIPSVHFADTRLQFPEKK--FR 596

Query: 720  PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
             G     ++L ++ E   + L+ K SL+N+   +  D   I P +   G + NI+  G  
Sbjct: 597  EGLSITARVLSVNLEKREVRLTLKKSLLNTEAAVWKDYRDILPGAQSPGTIINILPNGAV 656

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            V+F G + G+   S+  +    D S+ + +GQ V  + L+V++  G++++S +       
Sbjct: 657  VQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHALNVDASQGKLSVSCR------- 709

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
            D S + + +                +  K ++    G  + G V E +D  V++  E+  
Sbjct: 710  DQSLLADSYR---------------TAFKTIQP---GQSVTGTVFEKSDDYVLLRLEDLG 751

Query: 899  DVYGFITHHQLA-GATVESGSVI----------QAAILDVAKAERLVDLSLKTVFIDRFR 947
             +   +   Q+A G+  +  S +          +  +LDV +A RL+ ++ +        
Sbjct: 752  GLVARLGVGQVADGSASKRSSTLSKIRVGQKLNELVVLDVHRAHRLIHVTNRA------- 804

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA-----SV 1002
               S ++A K+       +DL     V   +  +    L +        IG         
Sbjct: 805  ---SLKKATKEGNMPSTFEDLREGAEVTGFIRNITPTGLFVQF--LGGLIGLVPRRLVGS 859

Query: 1003 SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD 1062
             D N  +F +  F   Q V ATV +L +     R +L +     T     K + KKS+ +
Sbjct: 860  EDSNKSEFGKANF---QVVSATVHSLDTDFR--RFILSMDPAEATHAGPKKESTKKSAKE 914

Query: 1063 ------------------------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
                                    VG +++ +I  +K  ++ +K      GRI ++EV D
Sbjct: 915  TAAAGDESLANPVDETLKAKSDITVGRVLKCKINSVKGTQINVKLADNVQGRIDVSEVFD 974

Query: 1099 DKSNVVE--NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTV 1147
               ++ +      +F+ GQ +TA+++   +              K  ++ELS+KP  +  
Sbjct: 975  SWEDISDKKQPLKHFRPGQVITAKVLGLHDARSYTYLPISHRTGKFNVYELSMKPKFVK- 1033

Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1207
            ++  + L  ++  V  G    G+V  V N++  +++S +++ +L  +D++ + S L + +
Sbjct: 1034 ADNATPLTIDQ--VQAGSSSFGFVNNVSNDFFWVSLSPNVRGRLRFIDASDDISLLADIE 1091

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            +++ IG A+   V  ++ EK  + L  R       +++  ++ D++      G ++  R+
Sbjct: 1092 KQYPIGCALKFRVTGVDAEKGHIDLSAR-------ERSESLTFDDLSV----GMVLPTRV 1140

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKN-ICVSDPLSGYDEGQFVKCKVLEISRTVRGT 1326
            +++      +++Q+   L G V    + +    +DP   Y + + V+  ++ + +  R  
Sbjct: 1141 TRVTDK--QVIMQLNNTLVGAVDLINMADDFSKADP-HAYHKNEVVRSCIIGVDKANR-- 1195

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1386
              + LSLR S           LS+ +      +  +E +  N I++G+V+ V+  G F+ 
Sbjct: 1196 -KIHLSLRPS---------KVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVT 1245

Query: 1387 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1446
            +   + A + +S+LSD Y++  +  F +G+LV GRV  V+P +K+++++LK S    + +
Sbjct: 1246 VGHNIVAFIRISDLSDSYLKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVLDPSYK 1305

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIE-NTNLVGLCHVSELSEDHVDNIETIYRA 1505
            + I  L +L  G IV G++++VE +G FI I+ ++N+ GLCH +E+++  V++  T+Y  
Sbjct: 1306 APIT-LYDLKPGQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTLYEE 1364

Query: 1506 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLEN 1565
            G+ VK K+LKVD+++ +IS G+K+SYF +DA++ + S  E+SD     + S+    L E+
Sbjct: 1365 GDAVKAKVLKVDRDQGKISFGLKASYFNDDAED-ESSGNEDSDSDGVSLDSFGGVELEES 1423

Query: 1566 SSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD-----------MD-NGIS 1613
                  D    S  G  L        +        + DE  +            D NG +
Sbjct: 1424 GESDEDDDSDVSMGGMDLEDESGSEESEEEEEGDAVVDEPTNKIRKGGLGAVGFDWNGNT 1483

Query: 1614 QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1673
            Q+    DEA   D  +     +K+++ R+ EI       L+ + P++  ++ERL+   PN
Sbjct: 1484 QDD--EDEAMQSDSDDEDKGIQKKRKHRQPEILVDRTGELDANGPQSVADYERLLLGEPN 1541

Query: 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733
            SS +W+KYMAF L + +VEKAR IAERAL+TI I ++ EKLNIWVA  NLEN YG+  ++
Sbjct: 1542 SSLLWLKYMAFQLELGEVEKAREIAERALRTITIGQDTEKLNIWVAMLNLENTYGD--DD 1599

Query: 1734 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQ 1791
             + +VF+RA QY D ++++  L  +Y ++ +N+ ADEL    +KK  F +S K ++    
Sbjct: 1600 TLEEVFKRACQYNDTQEIYERLTSIYIQSGKNEKADELFKTALKKKVFPNSPKFFINYAT 1659

Query: 1792 RLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSE 1847
             L       +  + ++ RAL SLP++ H++  S+ A LEF+  NG  +RGR++FEG+LS 
Sbjct: 1660 FLYDTMAAPDRGRGLLSRALQSLPKNTHVETTSKFAQLEFRSPNGDVERGRTVFEGLLSS 1719

Query: 1848 YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1907
            +PKR DLW++ LD EI+ GDV+  R                 F FKK+L++E+  G+E+ 
Sbjct: 1720 FPKRVDLWNVLLDLEIKNGDVEQAR-----------------FFFKKWLDFEEKKGDEKT 1762

Query: 1908 IEYVKQKAMEYVES 1921
            +E +K KA EYV+S
Sbjct: 1763 VEEIKAKAAEYVKS 1776



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 202/857 (23%), Positives = 367/857 (42%), Gaps = 91/857 (10%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
           DD P FPRGGG  LT  ER +IH  A  D  FE       K   KK  K E +A E   D
Sbjct: 53  DDEPSFPRGGGSVLTPLERKQIHIKATKDVLFE------QKSGTKKPSKDEDEAFEDDTD 106

Query: 107 LGSLFGDGIS---------GKLPRYANK------------ITLKNISAGMKLWGVVAEVN 145
           +     D  +         GK  + A +            ++ K +  G  + G V+ +N
Sbjct: 107 MEDADEDASTPAKKSQKRKGKGKKDAKQDKREKKGVRIEGLSFKRLVPGALILGQVSSIN 166

Query: 146 EKDLVICLPGGLRGLARAADALDPILDNEIE---------ANEDNLLPTIFHVGQLVSCI 196
             ++ I LP  L G      ++   L+++IE           E+  L   F++GQ +   
Sbjct: 167 AHNIGISLPNNLTGYVPLT-SVSKTLESKIEKMLEEDEDSDEEEFDLHDYFYLGQYLRTY 225

Query: 197 VLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG 253
           V+ + +   D     K++I LS+       GL    +     + A V S+EDHG ++  G
Sbjct: 226 VVSVGNKSADASSKSKKRIELSIDPRSANTGLQKTDLVVNAAVQASVVSVEDHGLVMDLG 285

Query: 254 L--PSFTGFL------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
           +      GF+      PR + +      +K G +   +V   +    V+ LS++  +   
Sbjct: 286 IEGTDVRGFMSSKEIDPRTDYST-----IKEGSVFLCMVTGQNANGNVIKLSANLQSSGS 340

Query: 306 CVTKDLKGI--SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 363
                   +  +I+  VPG+     +  +   G++   +     TVD+ H       T+ 
Sbjct: 341 IKKSHFLSVAPTINSFVPGVAAEILLTDVSSTGMIGKIMGMLDTTVDLVHSGGATGKTDL 400

Query: 364 KNDYNQHKKVNARILFVDPTSRA--VGLTL----NPYLLHNRAPPSH---VKVGDIYDQS 414
              Y+   K+  RI    P S    +G ++      +      P S      +  +  ++
Sbjct: 401 TKKYHNGAKIKGRISCTFPGSEPYKIGFSMLDHVQKFSAEGHGPNSSDDAPAISAVIPEA 460

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFR 471
            +V VD GLG+ + I ST      +V +S +A+ +V  +      +K G+    R++G+ 
Sbjct: 461 TIVNVDPGLGVYVKIGST--KHMGFVHVSRLADGQVETISSDHGPFKVGTTHEARVVGYS 518

Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPGMVVK---GKVIAVDS--FGAIVQFPGGVKALC 526
            ++ L +   +            DV  G VVK    KV+  +S   G IV    G+    
Sbjct: 519 AIDNLYSLSFERKVINQPFLRLEDVTLGAVVKVTITKVLVGESGVTGLIVSLTDGITGFI 578

Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEAT 584
           P  H ++  +  P KKF+ G  +  RVL V  + + + +T KK+L+ ++ A+   Y +  
Sbjct: 579 PSVHFADTRLQFPEKKFREGLSITARVLSVNLEKREVRLTLKKSLLNTEAAVWKDYRDIL 638

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
               + G I  I  +G  V+FY  V+G+   SE+      +PS  + +GQVV    ++  
Sbjct: 639 PGAQSPGTIINILPNGAVVQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHALNVD 698

Query: 645 PASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
            +  ++++S     ++  +  +    ++ G  V+G V   + + V++ +   G     + 
Sbjct: 699 ASQGKLSVSCRDQSLLADSYRTAFKTIQPGQSVTGTVFEKSDDYVLLRLEDLGGLVARLG 758

Query: 701 TEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSD 755
              +AD      +   S I+ G + ++L+VLD   ++ L+  + + SL  + ++  +PS 
Sbjct: 759 VGQVADGSASKRSSTLSKIRVGQKLNELVVLDVHRAHRLIHVTNRASLKKATKEGNMPST 818

Query: 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS--KAVDGQRADLSKTYYVGQSVR 813
              +   + V G++ NI  TG FV+FLG L G  PR    + D  +++  K  +  Q V 
Sbjct: 819 FEDLREGAEVTGFIRNITPTGLFVQFLGGLIGLVPRRLVGSEDSNKSEFGKANF--QVVS 876

Query: 814 SNILDVNSETGRITLSL 830
           + +  ++++  R  LS+
Sbjct: 877 ATVHSLDTDFRRFILSM 893



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 179/403 (44%), Gaps = 49/403 (12%)

Query: 187  FHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQEG 233
            F  GQ+++  VL L D +           GK  ++ LS++   +       L+++ VQ G
Sbjct: 989  FRPGQVITAKVLGLHDARSYTYLPISHRTGKFNVYELSMKPKFVKADNATPLTIDQVQAG 1048

Query: 234  MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRSI 287
                 +V ++ +  + +    P+  G L   + +++  +  D++     G  L+  V  +
Sbjct: 1049 SSSFGFVNNVSNDFFWVSLS-PNVRGRLRFIDASDDISLLADIEKQYPIGCALKFRVTGV 1107

Query: 288  DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
            D  +  + LS+   + S         ++ D L  GM++ TRV  + +  V++       G
Sbjct: 1108 DAEKGHIDLSARERSES---------LTFDDLSVGMVLPTRVTRVTDKQVIMQLNNTLVG 1158

Query: 348  TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP----- 402
             VD+ ++ + F   +  + Y++++ V + I+ VD  +R + L+L P  + + + P     
Sbjct: 1159 AVDLINMADDFSKAD-PHAYHKNEVVRSCIIGVDKANRKIHLSLRPSKVLSSSLPVQDPE 1217

Query: 403  ----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 458
                  VKV DI  +  V +V  G GL + +    V   A++ ISD+++  +++ +  ++
Sbjct: 1218 ITSMEQVKVNDII-RGFVRQVSDG-GLFVTVGHNIV---AFIRISDLSDSYLKEWKDSFQ 1272

Query: 459  EGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
             G  V+ R+             LK S  +       T  D+KPG +V GKV  V+ FGA 
Sbjct: 1273 VGQLVKGRVTLVDPENKKLQMSLKDSVLDPSYKAPITLYDLKPGQIVTGKVRKVEQFGAF 1332

Query: 516  VQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            +   G   V  LC    M++  +      ++ G  +  +VL V
Sbjct: 1333 IVIDGSSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLKV 1375



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 172/408 (42%), Gaps = 41/408 (10%)

Query: 123  ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDN 181
            A  +T+  + AG   +G V  V+     + L   +RG  R  DA D I L  +IE     
Sbjct: 1037 ATPLTIDQVQAGSSSFGFVNNVSNDFFWVSLSPNVRGRLRFIDASDDISLLADIEKQ--- 1093

Query: 182  LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
                 + +G  +   V  +D +K  I      LS R     + L+ + +  GMVL   V 
Sbjct: 1094 -----YPIGCALKFRVTGVDAEKGHID-----LSARER--SESLTFDDLSVGMVLPTRVT 1141

Query: 242  SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS----IDRTRKVVYLS 297
             + D   I+     +  G +   N+A++             VVRS    +D+  + ++LS
Sbjct: 1142 RVTDKQVIMQLN-NTLVGAVDLINMADDFSKADPHAYHKNEVVRSCIIGVDKANRKIHLS 1200

Query: 298  SDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
              P  V  S    +D +  S++ +    ++   V+ + + G+ ++        + I  L 
Sbjct: 1201 LRPSKVLSSSLPVQDPEITSMEQVKVNDIIRGFVRQVSDGGLFVTVGHNIVAFIRISDLS 1260

Query: 356  NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYD--- 412
            +++    WK+ +   + V  R+  VDP ++ + ++L   +L     PS+     +YD   
Sbjct: 1261 DSY-LKEWKDSFQVGQLVKGRVTLVDPENKKLQMSLKDSVLD----PSYKAPITLYDLKP 1315

Query: 413  ----QSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRI 467
                  KV +V++    ++   S+ VS   + T ++D   E+ R L   Y+EG  V+ ++
Sbjct: 1316 GQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTL---YEEGDAVKAKV 1372

Query: 468  LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
            L     +G  +  LKAS F       S         G  +++DSFG +
Sbjct: 1373 LKVDRDQGKISFGLKASYFNDDAEDESSGNEDSDSDG--VSLDSFGGV 1418


>gi|390473341|ref|XP_002756467.2| PREDICTED: protein RRP5 homolog [Callithrix jacchus]
          Length = 1880

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 403/1475 (27%), Positives = 691/1475 (46%), Gaps = 169/1475 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 19   FPRGGTRKIHKPEKAFQQSIEQDNLFDISTEEGSTKRKKSQKVPAKTKKLKIEKRE---- 74

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 75   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 128

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L   ++  GK+ + LSL    +
Sbjct: 129  AYTKKLNEQVMQEQPLKDLFHLPELFSPGMLVRCVVSSLSITER--GKKSVKLSLNPKNV 186

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 187  NRVLSAEVLKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIQQKNKGAKLKV 246

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +  +  VV+LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 247  GQYLNCIIEEVKGSGGVVHLSIGHLEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 306

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L++ P  L
Sbjct: 307  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVKACILCVHPRTRVVRLSMRPIFL 361

Query: 397  HNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P S +    +G +     V    +  G    +    +   AY  +S +++ +    
Sbjct: 362  QPGRPLSRLSCQHLGAVLTDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 418

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG VVKG V+ +  +G
Sbjct: 419  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGAVVKGTVLTIKPYG 478

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 479  MLVKVGEQMRGLVPHMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLVMTLKKTLVE 538

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL  ++ +A+A   L THG+I +++ +GC V+FY+ VQG  P+ EL  +   +P  +++
Sbjct: 539  SKLPAITCFADAKPGLQTHGFIIRVKDYGCIVKFYSDVQGLVPKHELSTEYIPDPERVFY 598

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM----KPTR------VSEDDLVKLGSLVSGVVDVVT 681
             GQVVK  +++S P+  R+ LSF +    +P +        ++  + +G LV   V   T
Sbjct: 599  TGQVVKVAVLNSEPSKERMLLSFKLLRDPEPKKEPAGHNQKKEKAINVGQLVDVKVLEKT 658

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+    ++  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 659  KDGLEVAVLPHN-TRAFLPTSHLSDHVTNGPLLHHWLQAGDTLHRVLCLSQSEGHVLLCR 717

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 718  KPALVSTVEGGQDPKNFSEIHPGMLLVGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 777

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S+ +  GQ+V + + +V+ E  R+ LSL+ S C   D +      L +  E++  ++
Sbjct: 778  TSTSEHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQGVR 837

Query: 858  SSKHNGSEL------KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 911
            S   N   +      +   G  +  V++ KV E  D  VV S     ++    + +   G
Sbjct: 838  SLMSNRDSVLIQTLAEMTPGMFLDLVVQ-KVLE--DGSVVFSGGPVPNLVLRASRYHRGG 894

Query: 912  ATVESGSVIQAAIL--DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
              VESG   +  IL  D+ K E LV L    V          NR+A+K ++  E      
Sbjct: 895  QEVESGQKKKVVILNVDLLKLEVLVSLHQDLV----------NRKAKKLRKGSE------ 938

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMAL 1028
             HQ   A+V+ +++++ + SL E  H + ++  S  N T +F  ++   GQ V  T+   
Sbjct: 939  -HQ---AVVQHLEKSFAIASLVETGHLVAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTT 994

Query: 1029 PSSST----------AGRLLLLLKAISET-------ETSSSKRAKKKSSYDVGSLVQAEI 1071
                T          A R + L +  SET       + + +    KK ++ +G +V   +
Sbjct: 995  EPGVTGLLLAVEGPAAKRTMRLTRKDSETVDEDEEVDPALTVGTIKKHTFSIGDMVTGTV 1054

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              IKP  + +    G  G IH + + DD         +  K+G+TVTAR+I      DMK
Sbjct: 1055 KSIKPTHVVVTLKDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DMK 1110

Query: 1132 K-SFL-----------WELSIKPSML----TVSEIGSKLLFEECD-VSIGQRVTGYV--Y 1172
               FL            ELS++PS L    T     S    E+      GQ VT ++  Y
Sbjct: 1111 TFKFLPISHPRFVRTVPELSVRPSELEDGHTALNTHSVSPMEKIKRYQAGQTVTCFLKKY 1170

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
             V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  LRL
Sbjct: 1171 NVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLRL 1230

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
             L             I    ++    EG++  GR+ K+     GL +       G V   
Sbjct: 1231 SL-------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTISFPFGKIGTVSLF 1272

Query: 1293 ELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1352
             + +     PL  +   + V+C +L     V     + LSLR      SS  + +  + V
Sbjct: 1273 HVSDSYSETPLEDFVPQKVVRCYILSTEDNV-----LTLSLR------SSRTNPETKSKV 1321

Query: 1353 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE- 1411
            + P   +  I+D+    +++GYV+++   G F  L   +   V L+        SP K+ 
Sbjct: 1322 EDP--EINSIQDIKEGQLLRGYVRSIQPHGVFFGLGPSV---VGLARYPHVSQHSPSKKA 1376

Query: 1412 -----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
                  P GKL+  RVL +      VE++    D+
Sbjct: 1377 LYNKHLPKGKLLTARVLRLNHQKNLVELSFLPGDT 1411



 Score =  291 bits (744), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1626 DEKNNRHAKKKEKEERE-------QEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFV 1677
            DEK ++  KKK K+ERE       +E+   EE L++    P + D+F+RLV SSPNSS +
Sbjct: 1572 DEKPHQATKKKSKKERELQKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1631

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1632 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1689

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1797
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1690 VFERAVQYNEPLKVFLHLADIYAKSEKFQEASELYNRMLKRFRQEKAVWIKYGAFLLRRS 1749

Query: 1798 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G  +R +++FE  L+ YPKRTD+WS
Sbjct: 1750 QAGASHCVLQRALECLPSTEHVDVIAKFAQLEFQLGDPERAKAIFENTLTTYPKRTDVWS 1809

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +Y+D  I+ G    +R +FER I LSL PKKMKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1810 VYIDMTIKHGSQKDVRDIFERVIHLSLAPKKMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1869

Query: 1917 EYVES 1921
            EYVE+
Sbjct: 1870 EYVEA 1874



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 148/323 (45%), Gaps = 44/323 (13%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++RL +RP           +S  ++   + +  + G     G   
Sbjct: 336  QAVKACILCVHPRTRVVRLSMRPIFLQPGRPLSRLSCQHLGAVLTDVPVQGFFKKAGATF 395

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 396  RLKDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 443

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  +   G  + +
Sbjct: 444  ---LSLRTSI----------------IEAQYL-RYHDIKPGAVVKGTVLTIKPYGMLVKV 483

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTAS 1445
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK +  +S+  +
Sbjct: 484  GEQMRGLVPHMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLVMTLKKTLVESKLPA 543

Query: 1446 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1505
               I   ++   G    G I RV+ YG  +    +++ GL    ELS +++ + E ++  
Sbjct: 544  ---ITCFADAKPGLQTHGFIIRVKDYGCIVKF-YSDVQGLVPKHELSTEYIPDPERVFYT 599

Query: 1506 GEKVKVKILKVDKEKRRISLGMK 1528
            G+ VKV +L  +  K R+ L  K
Sbjct: 600  GQVVKVAVLNSEPSKERMLLSFK 622



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 184/467 (39%), Gaps = 65/467 (13%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1136
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 395  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 442

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS---RHLKAQLFI 1193
             LS++ S++    +         D+  G  V G V  +     L+ +    R L   + +
Sbjct: 443  LLSLRTSIIEAQYLRYH------DIKPGAVVKGTVLTIKPYGMLVKVGEQMRGLVPHMHL 496

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
             D   +  E     +++HIG  V   VL  + E K L + L+          +    D  
Sbjct: 497  ADILMKNPE-----KKYHIGDEVKCRVLLCDPEAKKLVMTLKKTLVESKLPAITCFADAK 551

Query: 1254 QTFIHEGDIVG----GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
                  G I+     G I K  S V GLV +            EL    + DP   +  G
Sbjct: 552  PGLQTHGFIIRVKDYGCIVKFYSDVQGLVPK-----------HELSTEYIPDPERVFYTG 600

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
            Q VK  VL          + E S    L  +S     D     +  G + +K + ++   
Sbjct: 601  QVVKVAVL----------NSEPSKERML--LSFKLLRDPEPKKEPAGHNQKKEKAINVGQ 648

Query: 1370 IVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG----RVLS 1424
            +V   V   T  G  + +L     A +  S+LSD     P        L AG    RVL 
Sbjct: 649  LVDVKVLEKTKDGLEVAVLPHNTRAFLPTSHLSDHVTNGPLLHH---WLQAGDTLHRVLC 705

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1483
            +      V +  K +   T    +   N S +H G +++G +K ++ YG+FI    + L 
Sbjct: 706  LSQSEGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLVGFVKSIKDYGVFIQFP-SGLS 764

Query: 1484 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 765  GLAPKAIMSDKFVTSTSEHFVEGQTVVAKVTNVDEEKQRMLLSLRLS 811



 Score = 45.1 bits (105), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 105/209 (50%), Gaps = 22/209 (10%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G    +SS     +   G H  K+E+     +  G V  VT ++G  I
Sbjct: 1208 FRVGQALRATVVG---PDSSKAFLRLSLIGPH--KLEE---GEVAMGRVVKVTPNEGLTI 1259

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V L ++SD Y E+P ++F   K+V   +LS E     + ++L++S +   +
Sbjct: 1260 SFPFGKIGTVSLFHVSDSYSETPLEDFVPQKVVRCYILSTE--DNVLTLSLRSSRTNPET 1317

Query: 1446 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
            +S     EIN++ ++  G ++ G ++ ++ +G+F  +   ++VGL     +S+ H  + +
Sbjct: 1318 KSKVEDPEINSIQDIKEGQLLRGYVRSIQPHGVFFGL-GPSVVGLARYPHVSQ-HSPSKK 1375

Query: 1501 TIYR----AGEKVKVKILKVDKEKRRISL 1525
             +Y      G+ +  ++L+++ +K  + L
Sbjct: 1376 ALYNKHLPKGKLLTARVLRLNHQKNLVEL 1404


>gi|256271623|gb|EEU06665.1| Rrp5p [Saccharomyces cerevisiae JAY291]
 gi|323347043|gb|EGA81319.1| Rrp5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1729

 Score =  426 bits (1094), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 378/1301 (29%), Positives = 623/1301 (47%), Gaps = 178/1301 (13%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKGVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   NM T I   D + GR+ KI      +++ +G  + G    T+  N        
Sbjct: 1077 HVDI---NMST-IKVDDELPGRVLKIAEKY--VLLDLGNKVTGISFITDALNDFSLTLKE 1130

Query: 1305 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1362
             +++     +   VL +    +    +ELSLRS+     S  S                 
Sbjct: 1131 AFEDKINNVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH---------------- 1171

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
            EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +K +   + V G+V
Sbjct: 1172 EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKV 1231

Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFI 1475
            ++ +  S R+ +TL+        +SEIN         S++  GD+  G IK V  +G+F+
Sbjct: 1232 VTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFEGTIKNVTDFGVFV 1282

Query: 1476 TIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
             ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK++ISL +K+S+F  
Sbjct: 1283 KLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLKASHFSK 1342

Query: 1535 DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASV 1594
            +A   +++S   +    +++   +   ++ ++     D D ES+ G              
Sbjct: 1343 EA---ELASTTTTTTTADQLEKEDEDEVMADA--GFNDSDSESDIGDQ------------ 1385

Query: 1595 PPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK----EEREQEIRAAE 1649
                  + D +P+   +G+S + G    A  +D+        +++    E ++ + +  +
Sbjct: 1386 ---NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQEDFTENKKHKHKRRK 1442

Query: 1650 ERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1702
            E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++++EKAR +AERAL
Sbjct: 1443 ENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERAL 1502

Query: 1703 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1762
            +TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D   +H  LLG+YE +
Sbjct: 1503 KTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSYTIHTKLLGIYEIS 1560

Query: 1763 EQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKF 1820
            E+   A EL     KKF      +W+     L+   +E   + ++  AL +LP+  HI+ 
Sbjct: 1561 EKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEV 1620

Query: 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880
            + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D   +  LFER I+
Sbjct: 1621 VRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIIT 1680

Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
              +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1681 KKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  187 bits (474), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 319/1386 (23%), Positives = 594/1386 (42%), Gaps = 188/1386 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALD----PILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALRSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                  RRI  +  +   + ++     +++V   ++++  V   T ++V+V +   G  +
Sbjct: 663  DVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-R 721

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--L 752
            G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A++  L
Sbjct: 722  GVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETL 781

Query: 753  P---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            P    D   ++ +  +H Y+ +I + G FV F G+  G    S AVD +  D+SK +Y+ 
Sbjct: 782  PLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYIN 841

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            QSV   +L  + +  +  LSLK                 +E+ +          S +K  
Sbjct: 842  QSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSW 889

Query: 870  EGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSV 919
            +   IGS+++ K+   + N   V+++   H         D Y  IT  +   +  +   V
Sbjct: 890  DDLSIGSIVKAKIKGVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDV 949

Query: 920  IQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            I+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + Q +  
Sbjct: 950  IKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTG 1008

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTA 1034
             V     N+L L++ P     I    ++D N   F +    N +SV     AL    ++ 
Sbjct: 1009 FVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASI 1063

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             R    + AI ++    +      S+  V   +   + +I    + L  G    G   IT
Sbjct: 1064 DREHGFVNAIGKSHVDIN-----MSTIKVDDELPGRVLKIAEKYVLLDLGNKVTGISFIT 1118

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
            +  +D S  ++  F + KI   +   +++  + NK         ELS++ +      I S
Sbjct: 1119 DALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS 1170

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
                   D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E+++ +  
Sbjct: 1171 -----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKP 1223

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
             + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I  +  
Sbjct: 1224 MQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD 1277

Query: 1273 GVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
               G+ V++    ++ G  H TE+ +    D  + +  G  VK  VL+ +   +    + 
Sbjct: 1278 --FGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK---QIS 1332

Query: 1331 LSLRSS 1336
            LSL++S
Sbjct: 1333 LSLKAS 1338



 Score = 47.8 bits (112), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 9/156 (5%)

Query: 1375 VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
            + +V+S G  + + + +  A V   ++SD  +  PE++F IG  V GRV+SV      V 
Sbjct: 518  ITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISVNSRG-NVH 576

Query: 1434 VTLKTS-----DSRTASQSEINNLSNL-HVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
            VTLK S     D+     S   N  N+    +  +  ++  +  G  I+     L G   
Sbjct: 577  VTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFG-GLSGFLP 635

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
             SE+SE  V   E   R G+ V VK+L VD ++RRI
Sbjct: 636  NSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRI 671


>gi|225559332|gb|EEH07615.1| U3 snoRNP-associated protein Rrp5 [Ajellomyces capsulatus G186AR]
          Length = 1817

 Score =  424 bits (1091), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 390/1423 (27%), Positives = 681/1423 (47%), Gaps = 175/1423 (12%)

Query: 593  ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 648
            +TK+E   G +V+F +   GF   S L  D     SS    Y V    + RI+     S 
Sbjct: 477  VTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVG---FSA 533

Query: 649  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 699
              NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 534  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 592

Query: 700  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
            P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 593  PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 649

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 650  DILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 709

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
            +V+++  ++ +S K    S+       EH              H G+             
Sbjct: 710  NVDADFRKLVVSCKDQLSSTEAYKRALEHI-------------HPGN------------T 744

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI----------QAAILDV 927
            + G V E ++  +++  E+   V      H   G    +G+ +          +  IL++
Sbjct: 745  VSGTVFEKSNEDILLKLEDSGLVARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNM 804

Query: 928  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYL 986
             K+ RL+ ++ K           S +QA+++       +DL     V   V+ I+ +   
Sbjct: 805  QKSHRLIKVTNKP----------SLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLF 854

Query: 987  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 1046
            V  L      +    V D +  K P   +   Q +  TV ++       R +L LK    
Sbjct: 855  VEFLGGLTGFVPKRLVDDDHVNK-PSFGYALAQPISLTVQSIEDDRQ--RFILTLKEPHT 911

Query: 1047 TETSSSKRAKKKSSYD------------------VGSLVQAEITEIKPLELRLKFGIGFH 1088
             +   S R K+ ++ +                   G + +A++  IK  ++ ++      
Sbjct: 912  GKQRVSDRDKESNNANQSSINPIDGDIKSLDDLTFGRITKAKVVSIKETQINVQLAENIQ 971

Query: 1089 GRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWE 1137
            GRI ++EV D    + +       FK  Q +  RII    A+S++  P   +S    ++E
Sbjct: 972  GRIDVSEVFDSWEAIKDRKQPLRFFKAKQILPVRIIGIHDARSHRFLPISHRSGKYPVFE 1031

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
            LS KPS L  +++    L     V IG    G+V  + ++   ++IS +++ +L + D +
Sbjct: 1032 LSAKPSSLESTDLD---LLSLDKVKIGSAWIGFVNNIGDDCLWISISPNVRGRLRLTDVS 1088

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
             + S L +    F +G A+  HV  ++ +K  L L  +    G S   + IS+       
Sbjct: 1089 DDLSLLSDITTNFPVGSAIKVHVTGVDTDKNRLDLSAK---HGGSPNKLTISD------F 1139

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVL 1317
             +G+I+ GR++++      ++VQ+   + G ++  ++     +D  S  +   F K ++L
Sbjct: 1140 SKGEILLGRVTRVTEH--QVLVQLSDTVVGAINLIDM-----ADDYSKINPADFHKNEIL 1192

Query: 1318 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1377
             +         +++  +  L  M S+     S  +  P   +  I  +  N IV+G+V+ 
Sbjct: 1193 RVC-----VVDIDVPKKKILLSMRSSRVLSSSLPIQDP--EISSISQIKVNDIVRGFVRR 1245

Query: 1378 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437
            V   G F+ L   + A V +S+LSD Y++  + EF + +LV GRV+  +P S +++++LK
Sbjct: 1246 VADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLK 1305

Query: 1438 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHV 1496
             S      ++ I  + +L  G  V G+++ VE +G FI I+ T NL GLCH +E++E  V
Sbjct: 1306 QSVLDPNYKTPIT-IKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKV 1364

Query: 1497 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGS 1556
            ++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+  D       ++  E       
Sbjct: 1365 EDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKDSDDESDGEDVQDESEENVSESE 1424

Query: 1557 YNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM----DNGI 1612
            Y+             D+++ES D  S+    +E   +    E    D    M    D GI
Sbjct: 1425 YDGG----------MDLELESGDDISMGGVDLEDTMNGDNSESGSSDGDVQMTGTKDAGI 1474

Query: 1613 S------------QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRT 1660
            +             N   TDE    D  ++  A  K+K+ R+QEI+      L+ + P++
Sbjct: 1475 TGGLVTSGFDWNGNNNIGTDEDNESDSDSDNKAAVKKKKRRKQEIQVDRTGDLDTNGPQS 1534

Query: 1661 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY 1720
              ++ERL+   PNSS +W+KYMAF L +++V+KAR IAERAL++I+I ++ EK NIWVA 
Sbjct: 1535 VADYERLLLGEPNSSLLWLKYMAFQLELSEVDKAREIAERALRSISIGQDTEKFNIWVAM 1594

Query: 1721 FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI-KKF 1779
             NLEN +GN  ++ +  VF+RA QY DP+++H  L  +Y ++ ++  ADEL   ++ KKF
Sbjct: 1595 LNLENTFGN--DDTLEDVFKRACQYNDPQEIHERLTSIYIQSGKHDKADELFQAILKKKF 1652

Query: 1780 KHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVAD 1835
              S  ++L     L     + E  +A++ RA+ SLP H H+   S+   LEF+  NG  +
Sbjct: 1653 TQSPNIYLNFATFLFDTLAEPERGRALLPRAIQSLPTHTHVDITSKFGQLEFRSPNGDIE 1712

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP----------- 1884
            RGR++FEG++S +PKR DLW++ LD EI+ GD++ +R LF R + L  P           
Sbjct: 1713 RGRTIFEGLISSFPKRVDLWNVLLDLEIKNGDMEQVRRLFGRVLGLGHPIAADGTKPGAK 1772

Query: 1885 ---PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
                K+ KF FKK+L +E+  G+E+ ++ VK +A +YV +  A
Sbjct: 1773 RLKDKQAKFFFKKWLAFEEKTGDEKMVDEVKARAADYVRAIKA 1815



 Score =  180 bits (457), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 206/842 (24%), Positives = 361/842 (42%), Gaps = 62/842 (7%)

Query: 52  PVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNK-KKKKKTERKANETVDDLGSL 110
           P FPRGG   L+  E+ +IH +   +    ++G   ++    +  T++K +     + S 
Sbjct: 68  PAFPRGGADILSPLEQKQIHIQATRDVLFEQKGAQAQDDIDNEDGTQKKQSSKEFGIKSR 127

Query: 111 FGDGISGK--LPRYANK-------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG-- 159
            G   S K  +P+ + K       +  K I  G K+ G V+ +N  D+ + LP  L G  
Sbjct: 128 KGKTKSKKHTIPQASTKEEVRIEGLNFKRIVVGSKILGQVSSINAHDIGLSLPNNLTGYI 187

Query: 160 -LARAADALDPILDNEIEANEDNLL--------------PTIFHVGQLVSCIVLQLDDD- 203
            L   +  L   ++  + ++++                  + F +GQ +   V   + + 
Sbjct: 188 PLTAVSKTLQQKIEKLLNSSQEEDDNSDGDDDGDDDLDLKSYFKLGQYLRAAVTSTETEV 247

Query: 204 --KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTG 259
              K  GK+ I LS+       GLS   +     + A V S+EDHG ++  GL      G
Sbjct: 248 NHGKIKGKKHIELSVDPREANSGLSKSDLVVNATVQASVLSVEDHGLVMDLGLEDGQTRG 307

Query: 260 FLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISI 316
           F+    +  +   + +K G +   VV   +    VV LS++  T              +I
Sbjct: 308 FMSSKEIPHDLELLQIKEGTVFLCVVTGHNANGSVVKLSANLPTAGSIKKSHFLTSAPTI 367

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
           +  +PG      +  +   G+    +      VDI     T    +    Y+   K+  R
Sbjct: 368 NSFLPGTAAEILLTQVTSTGMAGKIMGMLDAVVDIVQSGATAGKEDITARYHVGAKIKGR 427

Query: 377 ILFVDPTSRAVGLTLN---------PYLLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLL 426
           ++   PT+  + L  +         P +L +++    V  +  I  + KV +V+ GLG+ 
Sbjct: 428 LICTFPTAEPLKLGFSILDHVVKFTPTVLDHKSSCEGVPAISAIVPEVKVTKVEPGLGVY 487

Query: 427 LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
           +              +SD   + +   +  Y   S    RI+GF  L+ L    L+    
Sbjct: 488 VQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVGFSALDNLYLLSLERKVI 547

Query: 487 EGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +       DV  G VVKGK+    I  D   G IV    G+  L P  HMS+ ++  P K
Sbjct: 548 DQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGISGLVPGMHMSDTKLQHPEK 607

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           KF+ G ++  R+L V  + +++ +T KKTL+ S+ +    Y++      + G I  I+ H
Sbjct: 608 KFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYSDILPGNQSPGTIISIQSH 667

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMK 657
           G  V+FY  V+GF P SE+      +P+  +++GQVV    ++     R++ +S    + 
Sbjct: 668 GAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNVDADFRKLVVSCKDQLS 727

Query: 658 PTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVM 714
            T   +  L  +  G+ VSG V   +   +++ +   G     +  EH++D         
Sbjct: 728 STEAYKRALEHIHPGNTVSGTVFEKSNEDILLKLEDSGLV-ARLNAEHVSDGQASRNGAA 786

Query: 715 KSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVC 770
            + I+ G + ++LL+L+ + S+ L+  + K SL  + Q  +LP+    +   S V G+V 
Sbjct: 787 LARIRVGQKLNELLILNMQKSHRLIKVTNKPSLKQARQRGELPAKFEDLEEGSKVTGFVK 846

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           NII  G FV FLG LTGF P+    D      S  Y + Q +   +  +  +  R  L+L
Sbjct: 847 NIIADGLFVEFLGGLTGFVPKRLVDDDHVNKPSFGYALAQPISLTVQSIEDDRQRFILTL 906

Query: 831 KQ 832
           K+
Sbjct: 907 KE 908



 Score = 45.4 bits (106), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 22/248 (8%)

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
            ++I     G ++  RV  + E+ V++       G +++  + + +   N   D+++++ +
Sbjct: 1134 LTISDFSKGEILLGRVTRVTEHQVLVQLSDTVVGAINLIDMADDYSKIN-PADFHKNEIL 1192

Query: 374  NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGL 423
               ++ +D   + + L++    + + + P         S +KV DI  +  V RV D GL
Sbjct: 1193 RVCVVDIDVPKKKILLSMRSSRVLSSSLPIQDPEISSISQIKVNDIV-RGFVRRVADNGL 1251

Query: 424  GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
             + L    T     AYV ISD+++  +++ + +++    VR R++            LK 
Sbjct: 1252 FVTLGHDVT-----AYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLKQ 1306

Query: 484  SAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVK 538
            S  +       T  D+K G  V GKV  V+ FGA +   G   +  LC    M+E ++  
Sbjct: 1307 SVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVED 1366

Query: 539  PGKKFKVG 546
              K F+ G
Sbjct: 1367 ARKLFEKG 1374


>gi|74194348|dbj|BAE24688.1| unnamed protein product [Mus musculus]
          Length = 1438

 Score =  424 bits (1091), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 406/1482 (27%), Positives = 685/1482 (46%), Gaps = 172/1482 (11%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+            +V  E   ++R   +K   K KK + +  +++  
Sbjct: 8    FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 68   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 116  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++ GM+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 174  RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 294  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 349  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 406  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 466  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL++++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 526  VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL---------VKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF ++  +R  +  +         V++G LV   V  
Sbjct: 586  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL
Sbjct: 646  KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D 
Sbjct: 705  CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
                 S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   
Sbjct: 765  FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG 
Sbjct: 825  IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VE G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ
Sbjct: 885  EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
                IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+      
Sbjct: 930  ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 986

Query: 1032 STAGRLLLLLKAIS----------ETETSSSK--------------------RAKKKSSY 1061
             T   L+L ++  +          ++ET   K                    ++KK+ S 
Sbjct: 987  VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSL 1044

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
             +G  V   I  +K   + +    GF G IH + + DD   V  +  +  K G+ VTAR+
Sbjct: 1045 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 1103

Query: 1122 IA----KSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSI-----GQRV 1167
            I     K++K  P     F   + ELS++PS L  S        E     I     GQ V
Sbjct: 1104 IGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTV 1163

Query: 1168 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
            T +   Y V  +W  + I   ++ ++ +L ++     L+   ++F +G+A+   V+  + 
Sbjct: 1164 TCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDV 1223

Query: 1226 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             +  L L ++ P++                  + EG++  GR+ K++    GL V     
Sbjct: 1224 PRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFG 1264

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1344
              G+V    L +     PL  +   + V+C +L  +  V     + LSLRSS     + N
Sbjct: 1265 KIGKVSMFHLSDSYSEAPLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKN 1319

Query: 1345 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1404
                   ++ P   +  IED+    +++GYVK V      I L   +      S++S+  
Sbjct: 1320 R------IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV 1371

Query: 1405 VESPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
               PEKE      P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1372 --PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411



 Score = 68.9 bits (167), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 138/321 (42%), Gaps = 40/321 (12%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y RV H ++ K    ++    +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARVSHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR S+              +  P     +  D+    +V+G V  +   G  + +
Sbjct: 433  ---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLAIKPFGILVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK +   T+  S
Sbjct: 473  GEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKT-LVTSKLS 531

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
             I        G    G I RV+ YG  +   N ++ GL    ELS  H+ + ET++  G+
Sbjct: 532  LITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIPDPETVFYTGQ 590

Query: 1508 KVKVKILKVDKEKRRISLGMK 1528
             VKV +L  +  K R+ L  +
Sbjct: 591  VVKVAVLSCEPSKERMLLSFR 611



 Score = 40.4 bits (93), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 180/458 (39%), Gaps = 47/458 (10%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
             RLK G+  + R+  + ++D K          FK G T   RII  S   +     L  L
Sbjct: 384  FRLKDGVLAYARV--SHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDE-----LALL 433

Query: 1139 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            S++ S++              D+ IG  V G V  +     L+ +   +K    +     
Sbjct: 434  SLRKSIIAAP------FLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKG--LVPSMHL 485

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
                ++  ++++  G  V   VL  + E K L + L+        KT+  S  ++ T  +
Sbjct: 486  ADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK--------KTLVTSKLSLIT-CY 536

Query: 1259 EGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            EG   G +   ++  V   G +V+    + G V   EL    + DP + +  GQ VK  V
Sbjct: 537  EGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAV 596

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L    +        LS R     +S +   D   +        +K   +    +V   V 
Sbjct: 597  LSCEPSKERML---LSFRL----LSDSRPKDPGVESSQ-----KKTGAVRIGQLVDVKVL 644

Query: 1377 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVE 1433
              T  G  + +L     A +   +LSD     P        G  +  RVL +    + + 
Sbjct: 645  EKTKTGLEVAILPHNTPAFLPTPHLSDHAANGPLLHHWLQTGDTLH-RVLCLSQSERHIL 703

Query: 1434 VTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            +  K +   T    +   +LS +  G ++IG +K ++ YG+F+    + L GL   + +S
Sbjct: 704  LCRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFP-SGLSGLSPKTIMS 762

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  V      +  G+ V  K+  VD+ K+R+ L ++ S
Sbjct: 763  DKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLS 800


>gi|410976033|ref|XP_003994430.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Felis catus]
          Length = 1871

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 408/1478 (27%), Positives = 680/1478 (46%), Gaps = 176/1478 (11%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG     + E+    +       ++  E E+ +R   +K   K KK + +  E    
Sbjct: 5    FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKRKKSQKGPAKTKKLKIEKRENSKS 64

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++++++  GM++ G V EVNE +LV+ LP GL+G  +  + 
Sbjct: 65   IREKF------------EILSIESLCEGMRILGCVXEVNELELVVSLPNGLKGFVQVTEI 112

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      +E  A E+ L     LP +F  G LV C+V  +     E GK+ + LSL   
Sbjct: 113  CDAYTKKLSEQVAQEEPLKDLARLPELFSPGMLVRCVVSSVGFT--EGGKKSVKLSLNPK 170

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G ++
Sbjct: 171  NVNEVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVGGARAFLPLQKAQEYIRQKNKGAEM 230

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  V+  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +  
Sbjct: 231  KVGHYLNCVIEEVKGNGGVVGLSIGHSEVSTAIATEEQNWTLNNLLPGLVVKAQVQKVTP 290

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
            +G++L+FL++FTG VD  HL      T + N     + V A +L V P +RAV L+L P 
Sbjct: 291  HGLILNFLSFFTGLVDFMHLDPKKAGTYFSN-----QTVRACVLCVHPRTRAVRLSLRPI 345

Query: 395  LLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
             L       R    H+  G + +   V       G    +    +   AY  +S +++ +
Sbjct: 346  FLQPGRSLTRLSCQHL--GAVLEDVPVQSFSSKAGATFRLKDGAL---AYARLSHLSDSK 400

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
                 + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKG V+ +
Sbjct: 401  NVFNAEAFKPGNTHKCRIIDYSQMDELALLSLRTSVIEAQYLRYHDIKPGALVKGTVLTI 460

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKK 567
              +G +V+    ++ L P  H+++  I  P KK+ +G E+  RVL    ++K++ +T KK
Sbjct: 461  KPYGMLVKVGEQIRGLVPPIHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKK 520

Query: 568  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
            TL++SKL  ++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P 
Sbjct: 521  TLIESKLPAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPE 580

Query: 628  SMYHVGQVVKCRIMSSIPASRRINLSFMM--KPTR------VSEDDLVKLGSLVSGVVDV 679
             +++ GQVVK  +++  P+  R+ LSF +   P R        +   V +G LV   V  
Sbjct: 581  RVFYTGQVVKVAVLNCEPSKERMLLSFKLLGDPKREHTGHSQKKRRAVSVGQLVDVKVLE 640

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T + + V V+        +P  HL+DH+ +  ++   ++ G    ++L L     ++LL
Sbjct: 641  KTKDGLEVAVLPHNVP-AFLPIPHLSDHVANGPLLYHWLQAGDILHRVLCLSQSEGHVLL 699

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S IHP  ++ G+V +I + G FV+F   L+G AP++   D 
Sbjct: 700  CRKPALVSTVEGGQDPKSFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDK 759

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEK-- 852
                 S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +          LEE+  
Sbjct: 760  FVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQG 819

Query: 853  IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQL 909
            +  L SS+ +   ++ +   I G V++ +V E  + G VV F E   V G +   + +  
Sbjct: 820  VRSLMSSR-DSVLIQTLAEMIPGMVLDLEVQEVLEDGSVV-FSE-GPVPGLVLRASRYHR 876

Query: 910  AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
            AG  VE G   +A IL++   +  V +SL    +        NR+A+K K+  E      
Sbjct: 877  AGQEVEPGQKKKAVILNIDMLKLEVHVSLCHDLV--------NRKAKKLKKGSE------ 922

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMAL 1028
             HQ   AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+   
Sbjct: 923  -HQ---AIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTT 978

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKR-------------------AKKKSSYDVGSLVQA 1069
                T    LL ++  +   T    R                   A KK +  +G +V  
Sbjct: 979  EPGVTG--FLLAVEGPATKRTVRQTRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTG 1036

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD 1129
             +  IKP  + +    G  G IH + + DD   V  +  +  K+G+TVTAR+I      D
Sbjct: 1037 TVKSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKTVTARVIGGR---D 1092

Query: 1130 MKK-SFL-----------WELSIKPSML-----TVSEIGSKLLFEEC-DVSIGQRVTGYV 1171
            MK   FL            ELS++PS L     T     S    E+      GQ V  ++
Sbjct: 1093 MKTFKFLPISHPRFIRTIPELSVRPSELEKDGCTALNTHSVSPLEKIKQYQAGQTVICFL 1152

Query: 1172 --YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1229
              Y V  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+  +  K  
Sbjct: 1153 KKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALKATVVGPDSSKAF 1212

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
            L L L             I    ++    +G++  GR+ K+ +   GL V       G V
Sbjct: 1213 LCLSL-------------IGPHKLE----KGEVAMGRVVKV-TPKEGLTVSFPFGKMGTV 1254

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
                + +     PL  +   + V+C VL  +  V     + LSLRS     S TN    S
Sbjct: 1255 SIFHVSDSYSEMPLEDFIPQKVVRCYVLSATDHV-----LTLSLRS-----SRTNPETKS 1304

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
               D     +  I+D+    +++GYVK+V   G    L   +   V L+        SP 
Sbjct: 1305 KITDA---EINSIQDIQEGQLLRGYVKSVQPHGVLFGLGPSV---VGLAQYPHVSQYSPS 1358

Query: 1410 KE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            K+       P GKL+  +VLS+      VE++    D+
Sbjct: 1359 KKALYNRYLPEGKLLTAKVLSLNRQKNLVELSFLPGDT 1396



 Score =  293 bits (751), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 149/327 (45%), Positives = 221/327 (67%), Gaps = 5/327 (1%)

Query: 1598 EVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1656
            +V LD   P +   G S +    D+ +   +K ++  +  EK++ E+E+   EE L++  
Sbjct: 1540 DVGLDSLTPALPPRGESSDSEEDDKPQQSTQKRSKKERMLEKQKAEKELSRIEEALMDPG 1599

Query: 1657 -APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1715
              P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN
Sbjct: 1600 RQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLN 1659

Query: 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1775
            +WVA  NLEN YG+P  E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +M
Sbjct: 1660 VWVALLNLENMYGSP--ESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRM 1717

Query: 1776 IKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
            +K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ G A
Sbjct: 1718 LKRFRQEKSVWIKYGAFLLRRGQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDA 1777

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
            +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+
Sbjct: 1778 ERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKR 1837

Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYVES 1921
            YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1838 YLDYEKQHGTEKDVQAVKAKALEYVEA 1864



 Score = 76.3 bits (186), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 150/322 (46%), Gaps = 42/322 (13%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            + V   VL ++   + +RL LRP   Q G S     ++  + Q   H G ++     +  
Sbjct: 322  QTVRACVLCVHPRTRAVRLSLRPIFLQPGRS-----LTRLSCQ---HLGAVLEDVPVQSF 373

Query: 1272 SGVGGLVVQI--GPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
            S   G   ++  G   Y R+ H ++ KN+  ++    +  G   KC++++ S+       
Sbjct: 374  SSKAGATFRLKDGALAYARLSHLSDSKNVFNAE---AFKPGNTHKCRIIDYSQMDELAL- 429

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
              LSLR+S+                   ++L +  D+ P  +V+G V  +   G  + + 
Sbjct: 430  --LSLRTSV----------------IEAQYL-RYHDIKPGALVKGTVLTIKPYGMLVKVG 470

Query: 1389 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQ 1446
             ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK +  +S+  + 
Sbjct: 471  EQIRGLVPPIHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPA- 529

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
              I   ++   G    G I RV+ YG  +   N ++ GL    ELS ++V + E ++  G
Sbjct: 530  --ITCYADAKPGLQTHGFILRVKDYGCIVKFYN-DVQGLVPKHELSAEYVPDPERVFYTG 586

Query: 1507 EKVKVKILKVDKEKRRISLGMK 1528
            + VKV +L  +  K R+ L  K
Sbjct: 587  QVVKVAVLNCEPSKERMLLSFK 608



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 100/245 (40%), Gaps = 33/245 (13%)

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 1064
            +   K P K+F  GQ++ ATV+  P SS A   L L+                    + G
Sbjct: 1183 FKVLKHPDKKFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEKG 1226

Query: 1065 SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
             +    + ++ P E L + F  G  G + I  V+D  S   E    +F   + V   +++
Sbjct: 1227 EVAMGRVVKVTPKEGLTVSFPFGKMGTVSIFHVSDSYS---EMPLEDFIPQKVVRCYVLS 1283

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1179
             ++        +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V     
Sbjct: 1284 ATD-------HVLTLSLRSSR-TNPETKSKITDAEINSIQDIQEGQLLRGYVKSVQPHGV 1335

Query: 1180 LLTISRHLKA-QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
            L  +   +     +   S Y PS+   + R    GK +T  VLS+N++K L+ L   P  
Sbjct: 1336 LFGLGPSVVGLAQYPHVSQYSPSKKALYNRYLPEGKLLTAKVLSLNRQKNLVELSFLPGD 1395

Query: 1239 DGISD 1243
             G  D
Sbjct: 1396 TGKPD 1400



 Score = 46.2 bits (108), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 180/460 (39%), Gaps = 53/460 (11%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSN--FKIGQTVTARIIAKSNKPDMKKSFLW 1136
             RLK G   + R+  + ++D K     N+F+   FK G T   RII  S   ++    L 
Sbjct: 381  FRLKDGALAYARL--SHLSDSK-----NVFNAEAFKPGNTHKCRIIDYSQMDELALLSLR 433

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
               I+   L   +I    L +   ++I  +  G + KV  +   L    HL A + I + 
Sbjct: 434  TSVIEAQYLRYHDIKPGALVKGTVLTI--KPYGMLVKVGEQIRGLVPPIHL-ADILIKNP 490

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
                      ++++HIG  V   VL  + E K L + L+          +    D     
Sbjct: 491  ----------EKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGL 540

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
               G I+  R+        G +V+    + G V   EL    V DP   +  GQ VK  V
Sbjct: 541  QTHGFIL--RVKDY-----GCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVAV 593

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L    +        + L   L G      +         G   +K   +S   +V   V 
Sbjct: 594  LNCEPSKE-----RMLLSFKLLGDPKREHT---------GHSQKKRRAVSVGQLVDVKVL 639

Query: 1377 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG----RVLSVEPLSKR 1431
              T  G  + +L   + A + + +LSD     P        L AG    RVL +      
Sbjct: 640  EKTKDGLEVAVLPHNVPAFLPIPHLSDHVANGP---LLYHWLQAGDILHRVLCLSQSEGH 696

Query: 1432 VEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V +  K +   T    +   + S +H G ++IG +K ++ YG+F+    + L GL   + 
Sbjct: 697  VLLCRKPALVSTVEGGQDPKSFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAI 755

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 756  MSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLS 795


>gi|345792763|ref|XP_535003.3| PREDICTED: protein RRP5 homolog [Canis lupus familiaris]
          Length = 1870

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 408/1479 (27%), Positives = 684/1479 (46%), Gaps = 178/1479 (12%)

Query: 54   FPRGGG---HSLTQR-----ERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
            FPRGG    H L +      E+D +  ++  E E+ +R   +K   K KK + +  E+  
Sbjct: 5    FPRGGTRKTHKLEKAFQQSVEQDNLF-DISIEEESTKRKKSQKGPAKTKKLKIEKRESSK 63

Query: 106  DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
             +   F              ++++++  GM++ G V EV+E +LVI LP GL+G  +A +
Sbjct: 64   SVREKF------------EVLSVESLREGMRILGCVKEVHELELVISLPNGLQGFVQATE 111

Query: 166  ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
              D   +  NE  A E+ L     L  +F  G LV C+V  +     E GK+ + LSL  
Sbjct: 112  ICDAYTEQLNEQVAQEEPLKDLVCLSELFSPGMLVRCVVSSVGIT--ESGKKSVKLSLNP 169

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 170  KNVNEVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAK 229

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  ++  +     VV LS  P  VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 230  LKVGQYLNCIIEEVKGNGGVVGLSIGPSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVT 289

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              G+ L+FLT+F+G VD  HL      T + N     + V A +L V P +RAV L+L P
Sbjct: 290  PVGLTLNFLTFFSGLVDFMHLDPKKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRP 344

Query: 394  YLLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 448
              L       R    H+  G + D   V       G    +    +   AY  +S +++ 
Sbjct: 345  IFLQPGRSLTRLSCQHL--GAVLDDVPVQSFFSKAGATFRLKDGAL---AYARLSHLSDS 399

Query: 449  EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
            +     + YK G+  + RI+ +  ++ +    L+ S  E   F + D+KPG +VKG V+ 
Sbjct: 400  KNIFNAEAYKPGNIHKCRIIDYSQMDEMVLLSLRPSIIESQYFRYHDIKPGALVKGTVLT 459

Query: 509  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHK 566
            ++ +G +V+    ++ L P  H+++  I  P KK+ +G E+  RVL    ++K++ +T K
Sbjct: 460  IEPYGMLVKVGEQIRGLIPPMHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK 519

Query: 567  KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
            KTL++SKL  ++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P
Sbjct: 520  KTLIESKLPAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDP 579

Query: 627  SSMYHVGQVVKCRIMSSIPASRRINLSFMM--KPTR------VSEDDLVKLGSLVSGVVD 678
              +++ GQVVK  +++  P+  R+ LSF +   P +        +   + +G LV   V 
Sbjct: 580  ERVFYTGQVVKVVVLNCEPSKERMLLSFKLLGDPKKEHTGHSQKKRRAISVGQLVDVKVL 639

Query: 679  VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
              T + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L      +L
Sbjct: 640  EKTKDGLEVSVLPHNIP-AFLPTPHLSDHVANGPLLYHWLQAGDTLHRVLCLSQSEGRVL 698

Query: 739  LSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            L  K +L+++ +  Q P + + IHP  ++ G+V +I + G FV+F   L+G AP++   D
Sbjct: 699  LCRKPALVSTVEGGQDPKNFAEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSD 758

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKI 853
                  S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +          LEE+ 
Sbjct: 759  KFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQ 818

Query: 854  AMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQL 909
             +     +  S L + +     G V++ +V E  + G VV F E   V G +   + +  
Sbjct: 819  GVRSLMSNRDSVLIQTLAEMTPGMVLDLEVQEVLEDGSVV-FSE-GPVSGLVLRASKYHR 876

Query: 910  AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
            AG  VE G   +  IL+V   +  V +SL    +        NR+ +K K+  E      
Sbjct: 877  AGQEVEPGQKKKVVILNVDMLKLEVHVSLCHDLV--------NRKPKKLKKGSE------ 922

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMAL 1028
             HQ   AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+   
Sbjct: 923  -HQ---AIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTT 978

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKR-------------------AKKKSSYDVGSLVQA 1069
                T    LL ++  +   T    R                   A KK +  +G +V  
Sbjct: 979  EPGMTG--FLLAVEGPAAKRTVRQTRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTG 1036

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD 1129
             +  IKP  + +    G  G IH + + DD   V  +  +  K+G+TVTAR+I      D
Sbjct: 1037 TVKSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGRTVTARVIGGR---D 1092

Query: 1130 MKK-SFL-----------WELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYV 1171
            MK   FL            ELS++PS L       ++   S  L +      GQ +  ++
Sbjct: 1093 MKTFKFLPISHPRFIRTIPELSVRPSELEKDGCTALNTHSSSHLEKIKQYQAGQTLICFL 1152

Query: 1172 --YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1229
              Y V  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+  +  K  
Sbjct: 1153 KKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALKATVVGPDSSKAF 1212

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
            L L L             I    ++    +G++  GR+ K+ +   GL V       G+V
Sbjct: 1213 LCLSL-------------IGPHKLE----KGEVAMGRVVKV-TPKEGLTVSFPFGKIGKV 1254

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV-ELSLRSSLDGMSSTNSSDL 1348
                + +     PL  +   + V+C VL        T HV  LSLRS     S TN    
Sbjct: 1255 SVFHVSDSYSETPLEDFVPQKIVRCYVLS------ATGHVLTLSLRS-----SRTNPETK 1303

Query: 1349 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1408
            S   D     +  I+D+    +++GYVK+V   G    L   +   V   ++S     SP
Sbjct: 1304 SKITDP---EINSIQDIQEGQLLRGYVKSVQPHGVLFGLGPSVVGLVQYPHVSQ---YSP 1357

Query: 1409 EKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
             K+       P GKL+  +VLS++     VE++   +D+
Sbjct: 1358 SKKTLYNRYLPEGKLLTAKVLSLKCQKNLVELSFLPNDT 1396



 Score =  289 bits (739), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 147/327 (44%), Positives = 221/327 (67%), Gaps = 5/327 (1%)

Query: 1598 EVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1656
            +V LD   P +   G S +    ++ +   +K ++  +  EK++ E+E+   EE L++  
Sbjct: 1539 DVGLDSLTPALPPRGESSDSEEDNKPQQSTQKKSKKERMLEKQKAEKELSRIEEALMDPG 1598

Query: 1657 -APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1715
              P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN
Sbjct: 1599 RQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLN 1658

Query: 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1775
            +WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +M
Sbjct: 1659 VWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYNKSEKFQEAGELYNRM 1716

Query: 1776 IKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
            +K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ G A
Sbjct: 1717 LKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDA 1776

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
            +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+
Sbjct: 1777 ERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKR 1836

Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYVES 1921
            YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1837 YLDYEKQHGTEKDVQAVKAKALEYVEA 1863



 Score = 77.4 bits (189), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 151/322 (46%), Gaps = 42/322 (13%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGG-RISKI 1270
            +AV   VL ++   + +RL LRP   Q G S     ++  + Q   H G ++    +   
Sbjct: 322  QAVRACVLCVHPRTRAVRLSLRPIFLQPGRS-----LTRLSCQ---HLGAVLDDVPVQSF 373

Query: 1271 LSGVGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
             S  G    ++ G   Y R+ H ++ KNI  ++    Y  G   KC++++ S+       
Sbjct: 374  FSKAGATFRLKDGALAYARLSHLSDSKNIFNAE---AYKPGNIHKCRIIDYSQMDE---M 427

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
            V LSLR S+              +++      +  D+ P  +V+G V  +   G  + + 
Sbjct: 428  VLLSLRPSI--------------IES---QYFRYHDIKPGALVKGTVLTIEPYGMLVKVG 470

Query: 1389 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQ 1446
             ++   +   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK +  +S+  + 
Sbjct: 471  EQIRGLIPPMHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPA- 529

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
              I   ++   G    G I RV+ YG  +   N ++ GL    ELS ++V + E ++  G
Sbjct: 530  --ITCYADAKPGLQTHGFILRVKDYGCIVKFYN-DVQGLVPKHELSAEYVPDPERVFYTG 586

Query: 1507 EKVKVKILKVDKEKRRISLGMK 1528
            + VKV +L  +  K R+ L  K
Sbjct: 587  QVVKVVVLNCEPSKERMLLSFK 608



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 108/465 (23%), Positives = 181/465 (38%), Gaps = 63/465 (13%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSN--FKIGQTVTARIIAKSNKPDMKKSFLW 1136
             RLK G   + R+  + ++D K     N+F+   +K G     RII  S   +M      
Sbjct: 381  FRLKDGALAYARL--SHLSDSK-----NIFNAEAYKPGNIHKCRIIDYSQMDEM-----V 428

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
             LS++PS++          F   D+  G  V G V  ++    L+ +   ++  +     
Sbjct: 429  LLSLRPSIIESQ------YFRYHDIKPGALVKGTVLTIEPYGMLVKVGEQIRGLI----- 477

Query: 1197 AYEPSELQEF-----QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
               P  L +      ++++HIG  V   VL  + E K L + L+          +    D
Sbjct: 478  --PPMHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYAD 535

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                    G I+  R+        G +V+    + G V   EL    V DP   +  GQ 
Sbjct: 536  AKPGLQTHGFIL--RVKDY-----GCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQV 588

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            VK  VL    +        + L   L G      +         G   +K   +S   +V
Sbjct: 589  VKVVVLNCEPSKE-----RMLLSFKLLGDPKKEHT---------GHSQKKRRAISVGQLV 634

Query: 1372 QGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG----RVLSVE 1426
               V   T  G  + +L   + A +   +LSD     P        L AG    RVL + 
Sbjct: 635  DVKVLEKTKDGLEVSVLPHNIPAFLPTPHLSDHVANGP---LLYHWLQAGDTLHRVLCLS 691

Query: 1427 PLSKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
                RV +  K +   T    +   N + +H G ++IG +K ++ YG+F+    + L GL
Sbjct: 692  QSEGRVLLCRKPALVSTVEGGQDPKNFAEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGL 750

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
               + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 751  APKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLS 795



 Score = 46.2 bits (108), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 33/245 (13%)

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 1064
            +   K P K+F  GQ++ ATV+  P SS A   L L+                    + G
Sbjct: 1183 FKVLKHPDKKFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEKG 1226

Query: 1065 SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
             +    + ++ P E L + F  G  G++ +  V+D  S   E    +F   + V   +++
Sbjct: 1227 EVAMGRVVKVTPKEGLTVSFPFGKIGKVSVFHVSDSYS---ETPLEDFVPQKIVRCYVLS 1283

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1179
             +         +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V     
Sbjct: 1284 ATG-------HVLTLSLRSSR-TNPETKSKITDPEINSIQDIQEGQLLRGYVKSVQPHGV 1335

Query: 1180 LLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
            L  +   +   + +   S Y PS+   + R    GK +T  VLS+  +K L+ L   P  
Sbjct: 1336 LFGLGPSVVGLVQYPHVSQYSPSKKTLYNRYLPEGKLLTAKVLSLKCQKNLVELSFLPND 1395

Query: 1239 DGISD 1243
             G  D
Sbjct: 1396 TGKPD 1400


>gi|190408455|gb|EDV11720.1| rRNA biogenesis protein RRP5 [Saccharomyces cerevisiae RM11-1a]
          Length = 1729

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 375/1301 (28%), Positives = 621/1301 (47%), Gaps = 178/1301 (13%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE-----IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +          ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFIAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   N+ T I   D + GR+ KI      +++ +G  + G    T+  N        
Sbjct: 1077 HVDI---NVST-IKVDDELPGRVLKIAEKY--VLLDLGNKVTGISFITDALNDFSLTLKE 1130

Query: 1305 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1362
             +++     +   VL +    +    +ELSLRS+     S  S                 
Sbjct: 1131 AFEDKINNVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH---------------- 1171

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
            EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +K +   + V G+V
Sbjct: 1172 EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKV 1231

Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFI 1475
            ++ +  S R+ +TL+        +SEIN         S++  GD+  G IK V  +G+F+
Sbjct: 1232 VTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFEGTIKNVTDFGVFV 1282

Query: 1476 TIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
             ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK++ISL +K+S+F  
Sbjct: 1283 KLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLKASHFSK 1342

Query: 1535 DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASV 1594
            +A   +++S   +    +++   +   ++ ++     D D ES+ G              
Sbjct: 1343 EA---ELASTTTTTTTADQLEKEDEDEVMADA--GFNDSDSESDIGDQ------------ 1385

Query: 1595 PPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK----EEREQEIRAAE 1649
                  + D +P+   +G+S + G    A  +D+        +++    E ++ + +  +
Sbjct: 1386 ---NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQEDFTENKKHKHKRRK 1442

Query: 1650 ERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1702
            E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++++EKAR +AERAL
Sbjct: 1443 ENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERAL 1502

Query: 1703 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1762
            +TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D   +H  LLG+YE +
Sbjct: 1503 KTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSYTIHTKLLGIYEIS 1560

Query: 1763 EQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKF 1820
            E+   A EL     KKF      +W+     L+   +E   + ++  AL +LP+  HI+ 
Sbjct: 1561 EKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEV 1620

Query: 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880
            + + A LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D   +  LFER I+
Sbjct: 1621 VRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIIT 1680

Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
              +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1681 KKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  186 bits (471), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 318/1386 (22%), Positives = 594/1386 (42%), Gaps = 188/1386 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALD----PILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALRSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                  RRI  +  +   + ++     +++V   ++++  V   T ++V+V +   G  +
Sbjct: 663  DVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-R 721

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--L 752
            G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A++  L
Sbjct: 722  GVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETL 781

Query: 753  P---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            P    D   ++ +  +H Y+ +I + G F+ F G+  G    S AVD +  D+SK +Y+ 
Sbjct: 782  PLTYDDVKDLNKDVPMHAYIKSISDKGLFIAFNGKFIGLVLPSYAVDSRDIDISKAFYIN 841

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            QSV   +L  + +  +  LSLK                 +E+ +          S +K  
Sbjct: 842  QSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSW 889

Query: 870  EGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSV 919
            +   IGS+++ K+   + N   V+++   H         D Y  IT  +   +  +   V
Sbjct: 890  DDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDV 949

Query: 920  IQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            I+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + Q +  
Sbjct: 950  IKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTG 1008

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTA 1034
             V     N+L L++ P     I    ++D N   F +    N +SV     AL    ++ 
Sbjct: 1009 FVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASI 1063

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             R    + AI ++    +      S+  V   +   + +I    + L  G    G   IT
Sbjct: 1064 DREHGFVNAIGKSHVDIN-----VSTIKVDDELPGRVLKIAEKYVLLDLGNKVTGISFIT 1118

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
            +  +D S  ++  F + KI   +   +++  + NK         ELS++ +      I S
Sbjct: 1119 DALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS 1170

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
                   D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E+++ +  
Sbjct: 1171 -----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKP 1223

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
             + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I  +  
Sbjct: 1224 MQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD 1277

Query: 1273 GVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
               G+ V++    ++ G  H TE+ +    D  + +  G  VK  VL+ +   +    + 
Sbjct: 1278 --FGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK---QIS 1332

Query: 1331 LSLRSS 1336
            LSL++S
Sbjct: 1333 LSLKAS 1338



 Score = 47.8 bits (112), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 9/156 (5%)

Query: 1375 VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
            + +V+S G  + + + +  A V   ++SD  +  PE++F IG  V GRV+SV      V 
Sbjct: 518  ITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISVNSRG-NVH 576

Query: 1434 VTLKTS-----DSRTASQSEINNLSNL-HVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
            VTLK S     D+     S   N  N+    +  +  ++  +  G  I+     L G   
Sbjct: 577  VTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFG-GLSGFLP 635

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
             SE+SE  V   E   R G+ V VK+L VD ++RRI
Sbjct: 636  NSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRI 671


>gi|431895473|gb|ELK04989.1| Protein RRP5 like protein [Pteropus alecto]
          Length = 2041

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 415/1511 (27%), Positives = 693/1511 (45%), Gaps = 201/1511 (13%)

Query: 37   AVEAQDLALPPDDDVPV----FPRGGGHSLTQRER--------DEIHAEVDAEFEAVERG 84
            AV A+ L L  D ++      FPRGG     + E+        D +  ++  E E+ +R 
Sbjct: 152  AVVARPLKLRGDPNMATMEESFPRGGTRKTHKSEKAFKQTVEQDNLF-DISTEEESTKRK 210

Query: 85   LHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEV 144
              +K   K KK + +  E+       F              ++++++  GM++ G V EV
Sbjct: 211  KSQKGPVKTKKLKIEKRESNKSAREKF------------EILSIESLCEGMRILGCVKEV 258

Query: 145  NEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIV 197
            NE +LVI LP GL+G  +  +  D      NE  A E+ L     LP +F  G LV C+V
Sbjct: 259  NELELVISLPNGLQGFVQVTEICDAYTKKLNEQVAQEEPLKDLVHLPELFSPGMLVRCVV 318

Query: 198  LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
              L   ++  GK+ + LSL    + K LS E ++ GM+LT  V S+EDHGY++  G+   
Sbjct: 319  SSLGITER--GKKSVKLSLNPKNVNKVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVGGA 376

Query: 258  TGFLPRN-----NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLK 312
              FLP       N  +N G  +K G  L  ++  +  +  VV LS D   VS  +  + +
Sbjct: 377  RAFLPLQKAQEYNRQKNKGAKLKVGQYLNCIIEEVKGSGGVVTLSIDHSEVSTAIATEEQ 436

Query: 313  GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 372
              +++ L+PG++V  ++Q +   G+ L+FL++FTG VD  HL      T     Y  ++ 
Sbjct: 437  NWTLNNLLPGLVVKAQIQKVTPLGLTLNFLSFFTGLVDFMHLDPKKAGT-----YCSNQA 491

Query: 373  VNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLL 427
            V A +L V P +R V L+L P  LH      R    H+  G + D   V       G   
Sbjct: 492  VRACVLCVHPRTRVVRLSLRPVFLHPGRSLTRLTCQHL--GAVLDDVPVQSFFNKAGATF 549

Query: 428  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
             +    +   AY  +S +++ +     + +K G+  + RI+ F  ++ LA   L+ S  E
Sbjct: 550  RLKDGSL---AYARLSHLSDSKTVFSPEAFKPGNTHKCRIIDFSQMDELAVLSLRTSIIE 606

Query: 488  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
               F + D+KPG +VKG V+ +  +G +V     ++ L P  H+++ ++  P KK+ +G 
Sbjct: 607  AQYFRYHDIKPGALVKGTVLTIKPYGMLVNVGEQIRGLVPPMHLADIQMKNPEKKYHIGD 666

Query: 548  ELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            E+  RVL    ++K++ +T KKTLV+SKL  ++ YA+A   L THG+I +++ +GC V+F
Sbjct: 667  EVTCRVLLCDPEAKKLMITLKKTLVESKLPAITCYADAKPGLQTHGFILRVKDYGCIVKF 726

Query: 606  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--KPTR--- 660
            YN VQG  P+ EL  +   +P  +++ GQVVK  +++  PA  R+ LSF +  +P +   
Sbjct: 727  YNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVAVLNCEPARERMLLSFKLLGEPEKERA 786

Query: 661  ---VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 717
                 +   V +G LV   V   T + + V V+        +PT HL+DH+ +  ++   
Sbjct: 787  GHSQKKRKAVNIGQLVDVKVLEKTRDGLEVAVLPHNIP-AFLPTSHLSDHVANGPLLYHW 845

Query: 718  IKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIET 775
            ++ G    ++L L      ++L  K +L+++ +  Q P   S I P  ++ G+V +I + 
Sbjct: 846  LQAGDTLHRVLCLSQSEGRIILCRKPALVSTMEGGQDPKSFSEIQPGMLLIGFVKSIKDY 905

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            G F++F   L+G AP++   D      S  +  GQ+V + + +V+ E  R+ LSL+ S C
Sbjct: 906  GVFIQFPSGLSGLAPKAVMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDC 965

Query: 836  SSTDASFMQEHF---LLEE--KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 890
            +  D +          LEE   +  L S++ +   ++ +     G V++ +V E  + G 
Sbjct: 966  ALGDLATTSLLLLSQCLEEWQGVRSLMSNR-DSVLIQTLAEMTPGMVLDLEVQEVLEDGS 1024

Query: 891  VVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
            V+ F E   V G +   + +  AG  VESG   +A IL+V   +  V +SL    +    
Sbjct: 1025 VI-FSE-GPVPGLVLRASKYHRAGQEVESGQKKKAVILNVDMLKLEVHVSLCHNLV---- 1078

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN- 1006
                NR+A+K K+  E       HQ   AIV+ ++E++ + SL E  H   ++  S  N 
Sbjct: 1079 ----NRKAKKLKKGSE-------HQ---AIVQHLEESFAIASLVETGHLAAFSLTSHLND 1124

Query: 1007 TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK---------- 1056
            T +F  ++   GQ V  T+       T   L +   A   T   + K ++          
Sbjct: 1125 TFRFDSEKLQVGQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRRTQKDSETVDEDDEADP 1184

Query: 1057 -------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 1109
                   KK +  +G +V   +  +KP  + +    G  G IH + + DD   V     +
Sbjct: 1185 AMVVGTLKKHTLSIGDMVTGTVKSVKPTHVVVTLKDGIIGCIHASHILDD-VPVGTCPTA 1243

Query: 1110 NFKIGQTVTARIIAKSNKPDMKK-SFL-----------WELSIKPSML-----TVSEIGS 1152
              K+G+TVTAR+I      DMK   FL            ELS++PS L     T     S
Sbjct: 1244 KLKVGKTVTARVIGGR---DMKTFKFLPISHPRFIRTIPELSVRPSELEKDGHTALNTHS 1300

Query: 1153 KLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR 1209
                E+      GQ VT ++  Y V  +W  + ++  ++ ++ IL ++     L+   ++
Sbjct: 1301 VSPSEKIKQYQAGQTVTCFLKKYNVVKKWLEVEVAPDIRGRIPILLTSLSFKVLKHPDKK 1360

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
            F IG+A+   V+  +  K  L L L             I    ++    +G++  GR+ K
Sbjct: 1361 FQIGQALKATVVGPDSSKAFLCLSL-------------IGPHKLE----KGEVAMGRVVK 1403

Query: 1270 ILSGVGGLVVQI-------------GPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            + +   GL V               GP L   +    LK+ C       +      +C V
Sbjct: 1404 V-TPKKGLTVSFPFGKIGTLWRGSQGPLLSPEM----LKSQCF------FLFCCHSRCYV 1452

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L  +  V     + LSLRSS         ++  T    P   +  I+D+    +++GYVK
Sbjct: 1453 LSTAGHV-----LTLSLRSS--------RTNPETKSKIPDPEINSIQDIEEGQLLRGYVK 1499

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVLSVEPLSK 1430
            +V   G  + L   +   V L+        SP K+       P GKL+  +VLSV     
Sbjct: 1500 SVEPHGVLLGLGPSV---VGLAQYPHVSQYSPSKKTLYNRHLPEGKLLTAKVLSVSHQKN 1556

Query: 1431 RVEVTLKTSDS 1441
             VE++    D+
Sbjct: 1557 LVELSFLPGDT 1567



 Score =  292 bits (747), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 161/371 (43%), Positives = 241/371 (64%), Gaps = 15/371 (4%)

Query: 1564 ENSSVAVQDMDMESEDGGSLVLAQIESR-ASVPPL--------EVNLDDEQPDMDNGISQ 1614
            ++S V V   + E E    ++LA+ ++R A VP L        +V LD   P +      
Sbjct: 1666 DDSGVEVYYREGEEETETRVLLAEKQTRPAEVPRLKLSSGFVWDVGLDSLTPALPPRGES 1725

Query: 1615 NQGHTDE--AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE-KDAPRTPDEFERLVRSS 1671
            +    DE   +   +K ++  ++ EK++ E+E+   EE L++ K  P + D+F+RLV SS
Sbjct: 1726 SDSEEDEKSQQATQKKKSKKERELEKQKAEKELSRIEEALMDPKRQPESADDFDRLVLSS 1785

Query: 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731
            PNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  
Sbjct: 1786 PNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS-- 1843

Query: 1732 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1791
            +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++   
Sbjct: 1844 QESLTKVFERAVQYNEPLKVFLQLADIYTKSEKFQEASELYNRMLKRFRQEKTVWIKYGA 1903

Query: 1792 RLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850
             LL++ Q E    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPK
Sbjct: 1904 FLLRRGQAEASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDAERAKALFENTLSIYPK 1963

Query: 1851 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1910
            RTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ 
Sbjct: 1964 RTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQS 2023

Query: 1911 VKQKAMEYVES 1921
            VK KA+EYVE+
Sbjct: 2024 VKAKALEYVEA 2034



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 146/322 (45%), Gaps = 42/322 (13%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +AV   VL ++   +++RL LRP     G S   +        T  H G ++     +  
Sbjct: 490  QAVRACVLCVHPRTRVVRLSLRPVFLHPGRSLTRL--------TCQHLGAVLDDVPVQSF 541

Query: 1272 SGVGGLVVQI--GPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
                G   ++  G   Y R+ H ++ K +   +    +  G   KC++++ S+       
Sbjct: 542  FNKAGATFRLKDGSLAYARLSHLSDSKTVFSPE---AFKPGNTHKCRIIDFSQMDELAV- 597

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
              LSLR+S+                   ++  +  D+ P  +V+G V  +   G  + + 
Sbjct: 598  --LSLRTSI----------------IEAQYF-RYHDIKPGALVKGTVLTIKPYGMLVNVG 638

Query: 1389 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQ 1446
             ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK +  +S+  + 
Sbjct: 639  EQIRGLVPPMHLADIQMKNPEKKYHIGDEVTCRVLLCDPEAKKLMITLKKTLVESKLPA- 697

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
              I   ++   G    G I RV+ YG  +   N ++ GL    ELS ++V + E ++ AG
Sbjct: 698  --ITCYADAKPGLQTHGFILRVKDYGCIVKFYN-DVQGLVPKHELSAEYVPDPERVFYAG 754

Query: 1507 EKVKVKILKVDKEKRRISLGMK 1528
            + VKV +L  +  + R+ L  K
Sbjct: 755  QVVKVAVLNCEPARERMLLSFK 776



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 184/460 (40%), Gaps = 53/460 (11%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1136
             RLK G   + R+  + ++D K+     +FS   FK G T   RII  S   +     L 
Sbjct: 549  FRLKDGSLAYARL--SHLSDSKT-----VFSPEAFKPGNTHKCRIIDFSQMDE-----LA 596

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
             LS++ S++          F   D+  G  V G V  +     L+ +   ++  +  +  
Sbjct: 597  VLSLRTSIIEAQ------YFRYHDIKPGALVKGTVLTIKPYGMLVNVGEQIRGLVPPMHL 650

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
            A    +++  ++++HIG  VT  VL  + E K L + L+          +    D     
Sbjct: 651  A--DIQMKNPEKKYHIGDEVTCRVLLCDPEAKKLMITLKKTLVESKLPAITCYADAKPGL 708

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
               G I+  R+        G +V+    + G V   EL    V DP   +  GQ VK  V
Sbjct: 709  QTHGFIL--RVKDY-----GCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVAV 761

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L             + L   L G           + +  G   +K + ++   +V   V 
Sbjct: 762  LNCEPA-----RERMLLSFKLLG---------EPEKERAGHSQKKRKAVNIGQLVDVKVL 807

Query: 1377 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG----RVLSVEPLSKR 1431
              T  G  + +L   + A +  S+LSD     P        L AG    RVL +     R
Sbjct: 808  EKTRDGLEVAVLPHNIPAFLPTSHLSDHVANGP---LLYHWLQAGDTLHRVLCLSQSEGR 864

Query: 1432 VEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + +  K +  S      +  + S +  G ++IG +K ++ YG+FI    + L GL   + 
Sbjct: 865  IILCRKPALVSTMEGGQDPKSFSEIQPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAV 923

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 924  MSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLS 963


>gi|301756220|ref|XP_002913967.1| PREDICTED: protein RRP5 homolog [Ailuropoda melanoleuca]
          Length = 1907

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 403/1480 (27%), Positives = 674/1480 (45%), Gaps = 180/1480 (12%)

Query: 54   FPRGGGH-------SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG         +L Q    +   ++  E E+ +R   +K   K KK + +  E+   
Sbjct: 39   FPRGGTRKTHKSKKALQQSVEQDNLFDISTEEESTKRKKSQKGSAKTKKLKIEKRESSKS 98

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++++++  GM++ G V EVNE +LVI LP GLRG  +  + 
Sbjct: 99   IREKF------------EILSIESLCEGMRILGCVKEVNEIELVISLPNGLRGFVQVTEI 146

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  +   ++  GK+ + LSL   
Sbjct: 147  CDAYTKKLNEQVAQEEPLKDLVSLPELFSPGMLVRCVVSSVGITER--GKKSVKLSLNPK 204

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +
Sbjct: 205  NVNEVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKL 264

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +  
Sbjct: 265  KVGQYLNCIIEEVKGNGGVVGLSVVHSEVSTAIATEEQNWTLNNLLPGLVVKAQVQKVTP 324

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FL++FTG VD  HL      T + N     + V A +L V P +RAV L+L P 
Sbjct: 325  VGLTLNFLSFFTGLVDFMHLDPKKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRPV 379

Query: 395  LLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
             L       R    H+  G + D+  V       G    +    +   AY  ++ +A+ +
Sbjct: 380  FLQPGRSLTRLSCQHL--GAVLDEVPVQNFFSKAGATFRLKDGAL---AYARLTHLADSK 434

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
                 + +K G+  + R++ +  ++ LA   L+ S  E     + D+KPG +V+G V+ +
Sbjct: 435  NVFNAEAFKPGNTHKCRVIDYSQMDELALLSLRTSVIEAQYLKYHDIKPGALVEGTVLTI 494

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKK 567
             S+G +V+    ++ L P  H+++  +  P KK+++G E+  RVL    ++K++ +T KK
Sbjct: 495  KSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKK 554

Query: 568  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
            TL++SKL  ++ YA+A   L THG+I +++  GC V+FYN VQG  P+ EL  +   +P 
Sbjct: 555  TLIESKLPAVTCYADAKPGLQTHGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYVPDPE 614

Query: 628  SMYHVGQVVKCRIMSSIPASRRINLSFMM-------KPTRVS-EDDLVKLGSLVSGVVDV 679
             +++ GQVVK  +++  P+  R+ LSF +        P +   E   V LG LV   V  
Sbjct: 615  RVFYAGQVVKVVVLNCEPSKERMLLSFRLLGDPKKEHPGKSQKERRTVSLGQLVDVKVLE 674

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L     ++LL
Sbjct: 675  KTKDGLEVAVLPHNIP-AFLPTPHLSDHVANGPLLYHWLRAGDTLHKVLCLSQSERHVLL 733

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   + IHP  ++ G+V +I + G FV+F   L+G AP++   D 
Sbjct: 734  CRKPALVSTVEGGQDPKSFAEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDK 793

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIA 854
                 S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +          LEE+  
Sbjct: 794  FVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQG 853

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLA 910
            +    S  +   ++ +     G V++ +V E  + G  V+F E   V G +   + +  A
Sbjct: 854  VRSLMSNRDSVLIQTLAEMTPGMVLDLEVQEVLEDG-SVAFSE-GPVPGLVLRASKYHRA 911

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
            G  VE G   +  IL+V   +  V +SL    +        NR+A+K ++  E       
Sbjct: 912  GQEVEPGQKKKVVILNVDMLKLEVHVSLCHDLV--------NRKAKKLRKGSE------- 956

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 1029
                 AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+    
Sbjct: 957  ---YQAIVQHLEESFAVASLVESGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTE 1013

Query: 1030 SSSTAGRLLLLLKAISETETSSSKR-------------------AKKKSSYDVGSLVQAE 1070
               T    LL ++  +   T    R                   A KK +  +G +V   
Sbjct: 1014 PGVTG--FLLAVEGPAAKRTVRQTRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTGT 1071

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
            +  IKP  + +    G  G IH + + DD   V  +  +  K+G+TVTAR+I      DM
Sbjct: 1072 VKSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKTVTARVIGGR---DM 1127

Query: 1131 KK-SFL-----------WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV------- 1171
            K   FL            ELSI+PS L   E   +       VS  +++  Y        
Sbjct: 1128 KTFKFLPISHPRFIRTIPELSIRPSEL---EKDGRTALNTHSVSPLEKIKQYQAGQTLIC 1184

Query: 1172 ----YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
                Y V  +W  + I+  ++ ++ +L  +     L+   ++F IG+A+   V+  +  K
Sbjct: 1185 FLKKYNVVKKWLEVEIAPDIRGRIPLLLMSLSFKVLKHPDKKFRIGQALKATVVGPDSSK 1244

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
              L L L             I    ++    +G++  GR+ K+ +   GL V       G
Sbjct: 1245 AFLCLSL-------------IGPHKLE----KGEVAMGRVMKV-TPKEGLTVSFPFGKIG 1286

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1347
            RV    + +     PL  +   + V+C VL ++  V     + LSLRS     S TN   
Sbjct: 1287 RVSIFHVSDSYSETPLEDFVPQKVVRCYVLSVTGHV-----LTLSLRS-----SRTNPET 1336

Query: 1348 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1407
             S   D     +  I+D+    +++GYVK V   G    L   +   V L+        S
Sbjct: 1337 KSKITDP---EINSIQDVQEGQLLRGYVKCVQPHGVLFGLGPSV---VGLARYPHVSQYS 1390

Query: 1408 PEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            P K+       P GKL+  +VL +      VE++   SD+
Sbjct: 1391 PSKKALYNRYLPEGKLLTAKVLRLNRQKNLVELSFLPSDT 1430



 Score =  288 bits (738), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/326 (44%), Positives = 217/326 (66%), Gaps = 4/326 (1%)

Query: 1598 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD- 1656
            +V LD   P +      +    D+      K ++  +  EK++ E+E+   EE L++   
Sbjct: 1577 DVGLDSLTPALPPRGESSDSEDDDKPQQSTKKSKKERMLEKQKAEKELSRIEEALMDPGR 1636

Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1716
             P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+
Sbjct: 1637 QPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNV 1696

Query: 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
            WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+
Sbjct: 1697 WVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRML 1754

Query: 1777 KKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835
            K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+
Sbjct: 1755 KRFRQEKAVWIKYGAFLLRRAQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDAE 1814

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+Y
Sbjct: 1815 RAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRY 1874

Query: 1896 LEYEKSVGEEERIEYVKQKAMEYVES 1921
            L+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1875 LDYEKQHGTEKDVQAVKAKALEYVEA 1900



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 149/321 (46%), Gaps = 40/321 (12%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +AV   VL ++   + +RL LRP   Q G S     +S  ++   + E  +         
Sbjct: 356  QAVRACVLCVHPRTRAVRLSLRPVFLQPGRS--LTRLSCQHLGAVLDEVPV-----QNFF 408

Query: 1272 SGVGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
            S  G    ++ G   Y R+ H  + KN+  ++    +  G   KC+V++ S+        
Sbjct: 409  SKAGATFRLKDGALAYARLTHLADSKNVFNAE---AFKPGNTHKCRVIDYSQMDELAL-- 463

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
             LSLR+S+                   ++L K  D+ P  +V+G V  + S G  + +  
Sbjct: 464  -LSLRTSV----------------IEAQYL-KYHDIKPGALVEGTVLTIKSYGMLVKVGE 505

Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQS 1447
            ++   +   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK +  +S+  +  
Sbjct: 506  QIRGLIPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPA-- 563

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
             +   ++   G    G I RV+  G  +   N ++ GL    ELS ++V + E ++ AG+
Sbjct: 564  -VTCYADAKPGLQTHGFILRVKDCGCIVKFYN-DVQGLVPKHELSAEYVPDPERVFYAGQ 621

Query: 1508 KVKVKILKVDKEKRRISLGMK 1528
             VKV +L  +  K R+ L  +
Sbjct: 622  VVKVVVLNCEPSKERMLLSFR 642



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 179/460 (38%), Gaps = 53/460 (11%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSN--FKIGQTVTARIIAKSNKPDMKKSFLW 1136
             RLK G   + R+  T + D K     N+F+   FK G T   R+I  S   ++    L 
Sbjct: 415  FRLKDGALAYARL--THLADSK-----NVFNAEAFKPGNTHKCRVIDYSQMDELALLSLR 467

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
               I+   L   +I    L E   ++I  +  G + KV  +   L    HL   L     
Sbjct: 468  TSVIEAQYLKYHDIKPGALVEGTVLTI--KSYGMLVKVGEQIRGLIPPMHLADIL----- 520

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
                  ++  ++++ IG  V   VL  + E K L + L+          V    D     
Sbjct: 521  ------MKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAVTCYADAKPGL 574

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
               G I+  R+        G +V+    + G V   EL    V DP   +  GQ VK  V
Sbjct: 575  QTHGFIL--RVKDC-----GCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVV 627

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L    +        LS R   D              + PGK  ++   +S   +V   V 
Sbjct: 628  LNCEPSKERML---LSFRLLGDPKK-----------EHPGKSQKERRTVSLGQLVDVKVL 673

Query: 1377 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG----RVLSVEPLSKR 1431
              T  G  + +L   + A +   +LSD     P        L AG    +VL +    + 
Sbjct: 674  EKTKDGLEVAVLPHNIPAFLPTPHLSDHVANGP---LLYHWLRAGDTLHKVLCLSQSERH 730

Query: 1432 VEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V +  K +   T    +   + + +H G ++IG +K ++ YG+F+    + L GL   + 
Sbjct: 731  VLLCRKPALVSTVEGGQDPKSFAEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAI 789

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 790  MSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLS 829


>gi|281352084|gb|EFB27668.1| hypothetical protein PANDA_001797 [Ailuropoda melanoleuca]
          Length = 1874

 Score =  422 bits (1085), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 404/1480 (27%), Positives = 674/1480 (45%), Gaps = 180/1480 (12%)

Query: 54   FPRGGGH-------SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG         +L Q    +   ++  E E+ +R   +K   K KK + +  E+   
Sbjct: 7    FPRGGTRKTHKSKKALQQSVEQDNLFDISTEEESTKRKKSQKGSAKTKKLKIEKRESSKS 66

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++++++  GM++ G V EVNE +LVI LP GLRG  +  + 
Sbjct: 67   IREKF------------EILSIESLCEGMRILGCVKEVNEIELVISLPNGLRGFVQVTEI 114

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  +   ++  GK+ + LSL   
Sbjct: 115  CDAYTKKLNEQVAQEEPLKDLVSLPELFSPGMLVRCVVSSVGITER--GKKSVKLSLNPK 172

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +
Sbjct: 173  NVNEVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKL 232

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +  
Sbjct: 233  KVGQYLNCIIEEVKGNGGVVGLSVVHSEVSTAIATEEQNWTLNNLLPGLVVKAQVQKVTP 292

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FL++FTG VD  HL      T + N     + V A +L V P +RAV L+L P 
Sbjct: 293  VGLTLNFLSFFTGLVDFMHLDPKKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRPV 347

Query: 395  LLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
             L       R    H+  G + D+  V       G    +    +   AY  ++ +A+ +
Sbjct: 348  FLQPGRSLTRLSCQHL--GAVLDEVPVQNFFSKAGATFRLKDGAL---AYARLTHLADSK 402

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
                 + +K G+  + R++ +  ++ LA   L+ S  E     + D+KPG +V+G V+ +
Sbjct: 403  NVFNAEAFKPGNTHKCRVIDYSQMDELALLSLRTSVIEAQYLKYHDIKPGALVEGTVLTI 462

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKK 567
             S+G +V+    ++ L P  H+++  +  P KK+++G E+  RVL    ++K++ +T KK
Sbjct: 463  KSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKK 522

Query: 568  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
            TL++SKL  ++ YA+A   L THG+I +++  GC V+FYN VQG  P+ EL  +   +P 
Sbjct: 523  TLIESKLPAVTCYADAKPGLQTHGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYVPDPE 582

Query: 628  SMYHVGQVVKCRIMSSIPASRRINLSFMM-------KPTRVS-EDDLVKLGSLVSGVVDV 679
             +++ GQVVK  +++  P+  R+ LSF +        P +   E   V LG LV   V  
Sbjct: 583  RVFYAGQVVKVVVLNCEPSKERMLLSFRLLGDPKKEHPGKSQKERRTVSLGQLVDVKVLE 642

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L     ++LL
Sbjct: 643  KTKDGLEVAVLPHNIP-AFLPTPHLSDHVANGPLLYHWLRAGDTLHKVLCLSQSERHVLL 701

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   + IHP  ++ G+V +I + G FV+F   L+G AP++   D 
Sbjct: 702  CRKPALVSTVEGGQDPKSFAEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDK 761

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIA 854
                 S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +          LEE+  
Sbjct: 762  FVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQG 821

Query: 855  MLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLA 910
            +     +  S L + +     G V++ +V E  + G  V+F E   V G +   + +  A
Sbjct: 822  VRSLMSNRDSVLIQTLAEMTPGMVLDLEVQEVLEDG-SVAFSE-GPVPGLVLRASKYHRA 879

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
            G  VE G   +  IL+V   +  V +SL    +        NR+A+K ++  E       
Sbjct: 880  GQEVEPGQKKKVVILNVDMLKLEVHVSLCHDLV--------NRKAKKLRKGSE------- 924

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 1029
                 AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+    
Sbjct: 925  ---YQAIVQHLEESFAVASLVESGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTE 981

Query: 1030 SSSTAGRLLLLLKAISETETSSSKR-------------------AKKKSSYDVGSLVQAE 1070
               T    LL ++  +   T    R                   A KK +  +G +V   
Sbjct: 982  PGVTG--FLLAVEGPAAKRTVRQTRKDSETVDEDEEADPALVVGAVKKHTLSIGDMVTGT 1039

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
            +  IKP  + +    G  G IH + + DD   V  +  +  K+G+TVTAR+I      DM
Sbjct: 1040 VKSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKTVTARVIGGR---DM 1095

Query: 1131 KK-SFL-----------WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV------- 1171
            K   FL            ELSI+PS L   E   +       VS  +++  Y        
Sbjct: 1096 KTFKFLPISHPRFIRTIPELSIRPSEL---EKDGRTALNTHSVSPLEKIKQYQAGQTLIC 1152

Query: 1172 ----YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
                Y V  +W  + I+  ++ ++ +L  +     L+   ++F IG+A+   V+  +  K
Sbjct: 1153 FLKKYNVVKKWLEVEIAPDIRGRIPLLLMSLSFKVLKHPDKKFRIGQALKATVVGPDSSK 1212

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
              L L L             I    ++    +G++  GR+ K+ +   GL V       G
Sbjct: 1213 AFLCLSL-------------IGPHKLE----KGEVAMGRVMKV-TPKEGLTVSFPFGKIG 1254

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1347
            RV    + +     PL  +   + V+C VL ++  V     + LSLRS     S TN   
Sbjct: 1255 RVSIFHVSDSYSETPLEDFVPQKVVRCYVLSVTGHV-----LTLSLRS-----SRTNPET 1304

Query: 1348 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1407
             S   D     +  I+D+    +++GYVK V   G    L   +   V L+        S
Sbjct: 1305 KSKITDP---EINSIQDVQEGQLLRGYVKCVQPHGVLFGLGPSV---VGLARYPHVSQYS 1358

Query: 1408 PEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            P K+       P GKL+  +VL +      VE++   SD+
Sbjct: 1359 PSKKALYNRYLPEGKLLTAKVLRLNRQKNLVELSFLPSDT 1398



 Score =  285 bits (730), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/330 (44%), Positives = 220/330 (66%), Gaps = 13/330 (3%)

Query: 1598 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE----KEEREQEIRAAEERLL 1653
            +V LD   P +       +G + +++  D+       KKE    K++ E+E+   EE L+
Sbjct: 1545 DVGLDSLTPALPP-----RGESSDSEDDDKPQQSTVSKKERMLEKQKAEKELSRIEEALM 1599

Query: 1654 EKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            +    P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE E
Sbjct: 1600 DPGRQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQE 1659

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL 
Sbjct: 1660 KLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELY 1717

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
             +M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ 
Sbjct: 1718 NRMLKRFRQEKAVWIKYGAFLLRRAQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQL 1777

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1891
            G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF 
Sbjct: 1778 GDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFF 1837

Query: 1892 FKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1838 FKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1867



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 149/321 (46%), Gaps = 40/321 (12%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +AV   VL ++   + +RL LRP   Q G S     +S  ++   + E  +         
Sbjct: 324  QAVRACVLCVHPRTRAVRLSLRPVFLQPGRS--LTRLSCQHLGAVLDEVPV-----QNFF 376

Query: 1272 SGVGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
            S  G    ++ G   Y R+ H  + KN+  ++    +  G   KC+V++ S+        
Sbjct: 377  SKAGATFRLKDGALAYARLTHLADSKNVFNAE---AFKPGNTHKCRVIDYSQMDELAL-- 431

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
             LSLR+S+                   ++L K  D+ P  +V+G V  + S G  + +  
Sbjct: 432  -LSLRTSV----------------IEAQYL-KYHDIKPGALVEGTVLTIKSYGMLVKVGE 473

Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQS 1447
            ++   +   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK +  +S+  +  
Sbjct: 474  QIRGLIPPMHLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPA-- 531

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
             +   ++   G    G I RV+  G  +   N ++ GL    ELS ++V + E ++ AG+
Sbjct: 532  -VTCYADAKPGLQTHGFILRVKDCGCIVKFYN-DVQGLVPKHELSAEYVPDPERVFYAGQ 589

Query: 1508 KVKVKILKVDKEKRRISLGMK 1528
             VKV +L  +  K R+ L  +
Sbjct: 590  VVKVVVLNCEPSKERMLLSFR 610



 Score = 48.1 bits (113), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 179/460 (38%), Gaps = 53/460 (11%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSN--FKIGQTVTARIIAKSNKPDMKKSFLW 1136
             RLK G   + R+  T + D K     N+F+   FK G T   R+I  S   ++    L 
Sbjct: 383  FRLKDGALAYARL--THLADSK-----NVFNAEAFKPGNTHKCRVIDYSQMDELALLSLR 435

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
               I+   L   +I    L E   ++I  +  G + KV  +   L    HL   L     
Sbjct: 436  TSVIEAQYLKYHDIKPGALVEGTVLTI--KSYGMLVKVGEQIRGLIPPMHLADIL----- 488

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
                  ++  ++++ IG  V   VL  + E K L + L+          V    D     
Sbjct: 489  ------MKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAVTCYADAKPGL 542

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
               G I+  R+        G +V+    + G V   EL    V DP   +  GQ VK  V
Sbjct: 543  QTHGFIL--RVKDC-----GCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVV 595

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L    +        LS R   D              + PGK  ++   +S   +V   V 
Sbjct: 596  LNCEPSKERML---LSFRLLGDPKK-----------EHPGKSQKERRTVSLGQLVDVKVL 641

Query: 1377 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG----RVLSVEPLSKR 1431
              T  G  + +L   + A +   +LSD     P        L AG    +VL +    + 
Sbjct: 642  EKTKDGLEVAVLPHNIPAFLPTPHLSDHVANGP---LLYHWLRAGDTLHKVLCLSQSERH 698

Query: 1432 VEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V +  K +   T    +   + + +H G ++IG +K ++ YG+F+    + L GL   + 
Sbjct: 699  VLLCRKPALVSTVEGGQDPKSFAEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAI 757

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 758  MSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLS 797


>gi|380792079|gb|AFE67915.1| protein RRP5 homolog, partial [Macaca mulatta]
          Length = 1431

 Score =  422 bits (1084), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 401/1469 (27%), Positives = 682/1469 (46%), Gaps = 157/1469 (10%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIIEKVKGNGGVVSLSVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  ++
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVR 826

Query: 858  S--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
            S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  V
Sbjct: 827  SLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEV 886

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ  
Sbjct: 887  ESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ-- 929

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T
Sbjct: 930  -AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT 988

Query: 1034 AGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEI 1074
               LLL ++  +   T    R                     KK +  +G +V   +  I
Sbjct: 989  G--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSI 1046

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-S 1133
            KP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK   
Sbjct: 1047 KPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFK 1102

Query: 1134 FL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            FL            ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1103 FLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVV 1162

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL- 1221

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                        I    ++    EG++  GR+ K+     GL V       G V    + 
Sbjct: 1222 ------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHVS 1264

Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1355
            +     PL  +   + V+C +L  + +V     + LSLR      SS  + +  + V+ P
Sbjct: 1265 DSYSETPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP 1313

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEF 1412
               +  I+D+    +++GYV ++   G F  L   +      S++S           K  
Sbjct: 1314 --EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHL 1371

Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            P GKL+  RVL +      VE++    D+
Sbjct: 1372 PEGKLLTARVLRLNHQKNLVELSFLPGDT 1400



 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 46/326 (14%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +
Sbjct: 433  ---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVLTIKSYGMLVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S
Sbjct: 473  GEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLVES 528

Query: 1448 E---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++ 
Sbjct: 529  KLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFY 587

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ VKV +L  +  K R+ L  K S
Sbjct: 588  TGQVVKVAVLNCEPSKERMLLSFKLS 613



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 150/681 (22%), Positives = 255/681 (37%), Gaps = 118/681 (17%)

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 1025
             V Q +N I+E VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIIEKVKGNGGVVSL-----SVGHSEVSTAIATEEQSWTLNNLLPGLVVKAQV 288

Query: 1026 MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 1076
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVRLSL 345

Query: 1077 ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 1100
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 1101 SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1158
                 N+F+   FK G T   RII  S   +     L  LS++ S++    +        
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQYLRYH----- 448

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-----QRRFHIG 1213
             D+  G  V G V  + +   L+ +   ++  +        P  L +      ++++HIG
Sbjct: 449  -DIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLV-------PPMHLADILMKNPEKKYHIG 500

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
              V   VL  + E K L + L+          +    D        G I+  R+      
Sbjct: 501  DEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYADAKPGLQTHGFII--RVKDY--- 555

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1333
              G +V+   ++ G V   EL    + DP   +  GQ VK  VL          + E S 
Sbjct: 556  --GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVL----------NCEPSK 603

Query: 1334 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLD 1392
               L  +S   SSD     +  G   +K + ++   +V   V   T  G  + +L   + 
Sbjct: 604  ERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIR 661

Query: 1393 AKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE-I 1449
            A +  S+LSD     P        G ++  RVL +      V +  K +   T    +  
Sbjct: 662  AFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGHVLLCRKPALVSTVEGGQDP 720

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
             N S +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V
Sbjct: 721  KNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 779

Query: 1510 KVKILKVDKEKRRISLGMKSS 1530
              K+  VD+EK+R+ L ++ S
Sbjct: 780  AAKVTNVDEEKQRMLLSLRLS 800



 Score = 41.2 bits (95), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 103/211 (48%), Gaps = 26/211 (12%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G  S+ +  L   +  P K LE+ E      +  G V  VT ++G  +
Sbjct: 1197 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-LEEGE------VAMGRVVKVTPNEGLTV 1248

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1249 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1304

Query: 1446 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1305 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1362

Query: 1499 IETIYRA----GEKVKVKILKVDKEKRRISL 1525
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1363 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1393


>gi|328767961|gb|EGF78009.1| hypothetical protein BATDEDRAFT_13567 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1670

 Score =  422 bits (1084), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 416/1524 (27%), Positives = 703/1524 (46%), Gaps = 195/1524 (12%)

Query: 478  TGILKASAFEGLVFTH-SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
            T I+  + F+    T  S ++PG +V   +  V   G  +       A     H+    I
Sbjct: 261  TKIISLTFFDLFYMTELSHIRPGSLVTATIQDVLENGLALHIFKFFSATIDWFHLGNGHI 320

Query: 537  VKPG---KKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHG 591
                    +FK G ++  RVL + +  K+I +T    L+  K     S+   T  +  + 
Sbjct: 321  SDKNDIKNQFKKGQKVASRVLYLNTAEKKIGLTLIPELILQKSPNFKSFEIGT--VSENI 378

Query: 592  WITKIEK-HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
             + +++   G  V++     G+   S +  D   +    +  G   + RI+     +  +
Sbjct: 379  TVLRVDPLFGLLVQYPGDRLGYVHMSRIADDHITKIDKAFRTGTTHRGRIVDHDYCNNLL 438

Query: 651  NLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
             ++F   P  V++  L    +K G  V G +  +TP+ VVV V       G  P+ H +D
Sbjct: 439  LIAF--APKIVNQPFLRLVDIKAGIKVKGQIRRITPSGVVVSVTDS--INGFCPSNHFSD 494

Query: 707  HLEHATVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
                      + +P   F +       +L +++    L+L+ K SL+ S  +LP+  S+ 
Sbjct: 495  --------VKIARPEKLFKEGATVAFHVLSVNSADKQLILTHKKSLMES--KLPTITSYT 544

Query: 760  --HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
               P  +  G + ++   GC V F   +    P  +  + +       + +GQ+++  ++
Sbjct: 545  EAQPGQITMGIITSVKNFGCIVSFYNNVHAIVPIVELSETRMDTPQDHFKIGQAIKCRVV 604

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG---FII 874
             V++        L +  C    ASF         K+A L      G++L  V G     +
Sbjct: 605  SVDA--------LNEKMC----ASF---------KLAAL------GNKLDSVSGTSTIQV 637

Query: 875  GSVIEG-KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERL 933
            G + +G  V +S D   V+S    +D+      H       +  ++ Q+    +    ++
Sbjct: 638  GQIYDGIVVTKSKD--TVISRVNDTDLVSISKSH-----LSDYPTIAQSLYDSLNTGSKI 690

Query: 934  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKENYLVL 988
                L  + ID++ +    R   K     +  +D GV +  + I +      V+  Y  L
Sbjct: 691  T--GLLAINIDKYGKPLITR---KHSLIFQVQQDNGVRKASDMINDQVCFGFVRNIYGKL 745

Query: 989  SLPEYNH----SIGYASVSDYNTQKFPQKQFLNGQSVIA----TVMALPSSSTAGRLLLL 1040
               E+      ++   ++SD N      +    GQSV A       A   + T  R+L +
Sbjct: 746  CFVEFTGGVVGAVSLQNISD-NFVSSVSEHLQIGQSVTAYQVPAWTATQVAFTQQRILAM 804

Query: 1041 LKAISETETSSSKRAKKK---------SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 1091
            L   ++ +     R  +           S     L++  +       + +       GRI
Sbjct: 805  LPKATKVKDMVQNRVLENPVDPHLSSLQSIKPDMLIKCTVKSFDDTYINVCIADNLDGRI 864

Query: 1092 HITEVNDDKSNVVE--NLFSNFKIGQTVTARII----------AKSNKPDMKKSFLWELS 1139
              TE+ D    + +     ++F+IGQ++ A++I            +N     K    +L+
Sbjct: 865  QATEIFDSFDQITDPKQPMASFQIGQSLQAKVIEVHIFKPHFHMTTNDKKSPKKVWIDLT 924

Query: 1140 IKPSML-------TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
            ++PS +       T S+I  KL   E    IG    G +  + +    + I   L   +F
Sbjct: 925  VRPSFIATENALTTASQIRPKLKTLE----IGSEHIGCIQHIGSRTLRILIQGGLLGDVF 980

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +D + +   +      F +G+ +   V+  + +KK   L L     G S K VD+    
Sbjct: 981  NMDISKDVDVVNNASSHFAVGQLIKCFVIFKDTQKKTFNLSLV----GASQKPVDM---- 1032

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
                   G  V G ++KI   + G+ ++IG H+  RVH T+L +     P   Y   Q V
Sbjct: 1033 ----FSVGQKVVGYVAKI-DPLKGINIRIGSHIIARVHITDLADEFNESPTDIYTIRQLV 1087

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            +  V+ I  T     H   SLR S              D   P   +          IVQ
Sbjct: 1088 QAVVVRID-TENNLIHC--SLRKSA----------FKPDTKFP---IFPFSSFQKGSIVQ 1131

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            GY+++++ KGCF+ L+  +  +V +  LSD +V   +  F  G LV GR++S+   SK++
Sbjct: 1132 GYIQSISEKGCFVGLTNDIYGRVKMCELSDSFVVDWKSAFKPGMLVKGRIISINTNSKQI 1191

Query: 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            E++ K S   T     +   S++ VG    G I+R+E YGLFI ++N+ L GLCHV E++
Sbjct: 1192 ELSFKKS-LVTNDAGNLLKFSDIKVGQKSEGVIRRIEDYGLFIVLKNSELCGLCHVLEVA 1250

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1552
            +  V N+E++Y  G+ V   +L+ + +K++ISL +K S F ND D L+ S EE   ++ E
Sbjct: 1251 DRPVKNLESLYSIGDSVMTVVLRTNPKKQQISLSIKPSRF-NDDDVLENSIEEAKVQSSE 1309

Query: 1553 EVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGI 1612
               S N S+ +++     ++ +ME  D   +  +                D QP  +  +
Sbjct: 1310 ---SENDSAFVDDE----ENDEMEQSDDEDINFSW---------------DTQPTAEKSV 1347

Query: 1613 SQNQG-------------HTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-AP 1658
              +                +D  +    K  R AKK+E+ + E+ I   E  L+E D  P
Sbjct: 1348 MHDSDSDSSSDSMQSGDDESDGDQQNKNKRKRRAKKRERAQEEKRIANKELELVEGDHPP 1407

Query: 1659 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1718
             T ++FERL+  SPN+S++WIKYM F L+MA++EKAR +AERAL+TIN REE E+LNIW+
Sbjct: 1408 ETAEDFERLLLGSPNNSYIWIKYMVFYLNMAEIEKARQVAERALKTINFREEQERLNIWI 1467

Query: 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1778
            A+ NLEN YGN   + + KV +RA+Q  D K V+  +  +YERT +++L  +L   M KK
Sbjct: 1468 AFLNLENTYGNV--DTLSKVLERAIQMNDAKTVYFHMAKIYERTGKDELCIKLYQTMCKK 1525

Query: 1779 FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837
            FK S +VW+     LL   +Q+  + ++ R++ SLP+ KH+   S+ A LEF +G  +RG
Sbjct: 1526 FKDSRQVWVSYACFLLTHGKQDAARQLLSRSMQSLPKRKHVDVTSKFAQLEFNHGEPERG 1585

Query: 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1897
            R++FEG+++  PKRTDLWS+Y+D EIR GD+ ++R LF+R +      +KMKF FKKY E
Sbjct: 1586 RTIFEGLMNSCPKRTDLWSVYIDMEIRAGDISIVRRLFDRVVQREWSARKMKFFFKKYFE 1645

Query: 1898 YEKSVGEEERIEYVKQKAMEYVES 1921
            +EK  G+E  ++ VKQ A+++VES
Sbjct: 1646 FEKKHGDENGVQNVKQAAIKFVES 1669



 Score =  340 bits (871), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 372/1434 (25%), Positives = 613/1434 (42%), Gaps = 202/1434 (14%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
            FPRGG       E  +I  +V  +      GL  + K  KK  +R  +   D   SL   
Sbjct: 9    FPRGGASDFNPLEYRDISDKVKEDVLFGVYGLTSEAKFNKKSKKRIVDNDFDSKSSLPKK 68

Query: 114  GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL-- 171
              +         ++ K +  GM L GVV ++N  ++V+ LP  L G     +  D I   
Sbjct: 69   SKTDFTALTVPILSYKKLDVGMCLLGVVKDINSLEMVVSLPNQLTGFVSLTEISDYISKQ 128

Query: 172  -------DNEIEANEDNL-------LPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWL 214
                   DNE E  + N        LP++   F +GQ V C ++  D   K    ++I L
Sbjct: 129  VEAAVDSDNEDEDTDMNSSAKDELDLPSLESYFQIGQSVVCKIISADQTSKN---KRIDL 185

Query: 215  SLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDV 274
            SL+   + +G+    +  GMVL   V S EDHGYIL  G+   +GFL      E++   +
Sbjct: 186  SLKPEAVNEGIEKTNIVSGMVLPMCVTSKEDHGYILSLGIKGVSGFLKN----EHASAYL 241

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSIL 333
                LL        +T  +V L+ +   +      DL  ++ +  + PG +V+  +Q +L
Sbjct: 242  SSKNLL-------GKTFCLVSLNLEYTKIISLTFFDLFYMTELSHIRPGSLVTATIQDVL 294

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPT--TNWKNDYNQHKKVNARILFVDPTSRAVGLTL 391
            ENG+ L    +F+ T+D FHL N   +   + KN + + +KV +R+L+++   + +GLTL
Sbjct: 295  ENGLALHIFKFFSATIDWFHLGNGHISDKNDIKNQFKKGQKVASRVLYLNTAEKKIGLTL 354

Query: 392  NPYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
             P L+  ++P     ++G + +   V+RVD   GLL+  P   +    YV +S +A++ +
Sbjct: 355  IPELILQKSPNFKSFEIGTVSENITVLRVDPLFGLLVQYPGDRL---GYVHMSRIADDHI 411

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
             K++K ++ G+  R RI+   +   L                  D+K G+ VKG++  + 
Sbjct: 412  TKIDKAFRTGTTHRGRIVDHDYCNNLLLIAFAPKIVNQPFLRLVDIKAGIKVKGQIRRIT 471

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 568
              G +V     +   CP  H S+ +I +P K FK GA + F VL V S  K++ +THKK+
Sbjct: 472  PSGVVVSVTDSINGFCPSNHFSDVKIARPEKLFKEGATVAFHVLSVNSADKQLILTHKKS 531

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            L++SKL  ++SY EA    IT G IT ++  GC V FYN V    P  EL       P  
Sbjct: 532  LMESKLPTITSYTEAQPGQITMGIITSVKNFGCIVSFYNNVHAIVPIVELSETRMDTPQD 591

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM-----KPTRVSEDDLVKLGSLVSGVVDVVTPN 683
             + +GQ +KCR++S    + ++  SF +     K   VS    +++G +  G+V   + +
Sbjct: 592  HFKIGQAIKCRVVSVDALNEKMCASFKLAALGNKLDSVSGTSTIQVGQIYDGIVVTKSKD 651

Query: 684  AVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD-NESSNLLLSAK 742
             V+  V        +I   HL+D+   A  +   +  G +   LL ++ ++    L++ K
Sbjct: 652  TVISRV--NDTDLVSISKSHLSDYPTIAQSLYDSLNTGSKITGLLAINIDKYGKPLITRK 709

Query: 743  YSLINSAQQLPS--DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 800
            +SLI   QQ      AS +  + V  G+V NI    CFV F G + G        D   +
Sbjct: 710  HSLIFQVQQDNGVRKASDMINDQVCFGFVRNIYGKLCFVEFTGGVVGAVSLQNISDNFVS 769

Query: 801  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 860
             +S+   +GQSV                + +    ++T  +F Q+  L     AML  + 
Sbjct: 770  SVSEHLQIGQSVT---------------AYQVPAWTATQVAFTQQRIL-----AMLPKAT 809

Query: 861  HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
                    V+  +   V+E  V            + H      I    L   TV+S    
Sbjct: 810  K-------VKDMVQNRVLENPV------------DPHLSSLQSIKPDMLIKCTVKS---F 847

Query: 921  QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI-VE 979
                ++V  A+ L      T   D F +    +Q         AS  +G       I V 
Sbjct: 848  DDTYINVCIADNLDGRIQATEIFDSFDQITDPKQPM-------ASFQIGQSLQAKVIEVH 900

Query: 980  IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN---GQSVIATVMALPSSSTAGR 1036
            I K ++ + +                N +K P+K +++     S IAT  AL   +TA +
Sbjct: 901  IFKPHFHMTT----------------NDKKSPKKVWIDLTVRPSFIATENAL---TTASQ 941

Query: 1037 LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
            +   LK +                 ++GS     I  I    LR+    G  G +   ++
Sbjct: 942  IRPKLKTL-----------------EIGSEHIGCIQHIGSRTLRILIQGGLLGDVFNMDI 984

Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL---SIKPSMLTVSEIGSK 1153
            + D  +VV N  S+F +GQ +   +I K  +   KK+F   L   S KP  +        
Sbjct: 985  SKD-VDVVNNASSHFAVGQLIKCFVIFKDTQ---KKTFNLSLVGASQKPVDM-------- 1032

Query: 1154 LLFEECDVSIGQRVTGYVYKVDNEWAL-LTISRHLKAQLFILDSAYE----PSELQEFQR 1208
                    S+GQ+V GYV K+D    + + I  H+ A++ I D A E    P+++     
Sbjct: 1033 -------FSVGQKVVGYVAKIDPLKGINIRIGSHIIARVHITDLADEFNESPTDI----- 1080

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLR--PFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
             + I + V   V+ I+ E  L+   LR   F+          S+        +G IV G 
Sbjct: 1081 -YTIRQLVQAVVVRIDTENNLIHCSLRKSAFKPDTKFPIFPFSS------FQKGSIVQGY 1133

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGT 1326
            I  I     G  V +   +YGRV   EL +  V D  S +  G  VK +++ I+   +  
Sbjct: 1134 IQSI--SEKGCFVGLTNDIYGRVKMCELSDSFVVDWKSAFKPGMLVKGRIISINTNSK-- 1189

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1386
              +ELS + SL              V     +L K  D+      +G ++ +   G FI+
Sbjct: 1190 -QIELSFKKSL--------------VTNDAGNLLKFSDIKVGQKSEGVIRRIEDYGLFIV 1234

Query: 1387 L-SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
            L + +L     +  ++D  V++ E  + IG  V   VL   P  +++ +++K S
Sbjct: 1235 LKNSELCGLCHVLEVADRPVKNLESLYSIGDSVMTVVLRTNPKKQQISLSIKPS 1288



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 120/260 (46%), Gaps = 12/260 (4%)

Query: 416  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
            V ++D   G+ + I S  +   A V I+D+A+E        Y     V+  ++       
Sbjct: 1043 VAKIDPLKGINIRIGSHII---ARVHITDLADEFNESPTDIYTIRQLVQAVVVRIDTENN 1099

Query: 476  LATGILKASAFEG----LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 531
            L    L+ SAF+      +F  S  + G +V+G + ++   G  V     +     +  +
Sbjct: 1100 LIHCSLRKSAFKPDTKFPIFPFSSFQKGSIVQGYIQSISEKGCFVGLTNDIYGRVKMCEL 1159

Query: 532  SEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
            S+  +V     FK G  +  R++ +   SK+I ++ KK+LV +    L  +++      +
Sbjct: 1160 SDSFVVDWKSAFKPGMLVKGRIISINTNSKQIELSFKKSLVTNDAGNLLKFSDIKVGQKS 1219

Query: 590  HGWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G I +IE +G F+   N  + G     E+   P     S+Y +G  V   ++ + P  +
Sbjct: 1220 EGVIRRIEDYGLFIVLKNSELCGLCHVLEVADRPVKNLESLYSIGDSVMTVVLRTNPKKQ 1279

Query: 649  RINLSFMMKPTRVSEDDLVK 668
            +I+LS  +KP+R ++DD+++
Sbjct: 1280 QISLS--IKPSRFNDDDVLE 1297


>gi|207342136|gb|EDZ69994.1| YMR229Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1729

 Score =  421 bits (1083), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 377/1301 (28%), Positives = 622/1301 (47%), Gaps = 178/1301 (13%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K ++P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 530  IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +LP      +A +I   N      V      GC + F G L+GF P S+  +      
Sbjct: 588  DNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C                K++  Q+++  
Sbjct: 648  EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686

Query: 863  GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
             +    +E  + G ++I   V E     V+V   +   + G I    L+ + +E      
Sbjct: 687  DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741

Query: 917  -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
                 G+ +   ++D     R+ ++SLK+  I   ++A            ++ +KD+ +H
Sbjct: 742  KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798

Query: 972  QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
              + +I +    V  N  ++ L LP Y        +S         K F   QSV  TV 
Sbjct: 799  AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847

Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             L +     + LL LKA           S  E       K      +GS+V+A+I  +K 
Sbjct: 848  LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIA----KSNK--- 1127
             +L +      HGR+ I EV D    + +     SN+K    +  +II     KS+K   
Sbjct: 908  NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967

Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
                + K+ + ELS+KPS L   E+ +K L E   ++IGQ +TG+V         LTIS 
Sbjct: 968  ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024

Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             LKA++ +LD A   S   E  +  F +G A+   V SI++E          F + I   
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VDI   NM T I   D + GR+ KI      +++ +G  + G    T+  N        
Sbjct: 1077 HVDI---NMST-IKVDDELPGRVLKIAEKY--VLLDLGNKVTGISFITDALNDFSLTLKE 1130

Query: 1305 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1362
             +++     +   VL +    +    +ELSLRS+     S  S                 
Sbjct: 1131 AFEDKINNVIPTTVLSVDEQNK---KIELSLRSATAKTRSIKSH---------------- 1171

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
            EDL    IV G VKNV  KG F+ LSRK++A V +S LSD Y++  +K +   + V G+V
Sbjct: 1172 EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKV 1231

Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFI 1475
            ++ +  S R+ +TL+        +SEIN         S++  GD+  G IK V  +G+F+
Sbjct: 1232 VTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFEGTIKNVTDFGVFV 1282

Query: 1476 TIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
             ++NT N+ GL H++E+++   +++  ++  G++VK  +LK + EK++ISL +K+S+F  
Sbjct: 1283 KLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLKASHFSK 1342

Query: 1535 DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASV 1594
            +A   +++S   +    +++   +   ++ ++     D D ES+ G              
Sbjct: 1343 EA---ELASTTTTTTTADQLEKEDEDEVMADA--GFNDSDSESDIGDQ------------ 1385

Query: 1595 PPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK----EEREQEIRAAE 1649
                  + D +P+   +G+S + G    A  +D+        +++    E ++ + +  +
Sbjct: 1386 ---NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQEDFTENKKHKHKRRK 1442

Query: 1650 ERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1702
            E +++         AP +  +FERL+  +PNSS VW+ YMAF L ++++EKAR +AERAL
Sbjct: 1443 ENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERAL 1502

Query: 1703 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1762
            +TIN REE EKLNIW+A  NLEN +G   EE + +VF RA QY D   +H  LLG+YE +
Sbjct: 1503 KTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSYTIHTKLLGIYEIS 1560

Query: 1763 EQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKF 1820
            E+   A EL     KKF      +W+     L+   +E   + ++  AL +LP+  HI+ 
Sbjct: 1561 EKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEV 1620

Query: 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880
            + + A LEF  G  +RGRS+FEG++++  KR DLW++Y+DQE++  D   +  LFER I+
Sbjct: 1621 VRKFAQLEFAKGDPERGRSLFEGLVADALKRIDLWNVYVDQEVKAKDKKKVEDLFERIIT 1680

Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
              +  K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1681 KKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721



 Score =  186 bits (472), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 319/1386 (23%), Positives = 594/1386 (42%), Gaps = 188/1386 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            FPRGG  +LT  E  ++  E  ++     E+V+         KKKKT +K+     +  S
Sbjct: 38   FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
               D     L  + N  TLKN   G  L G ++ + ++DL I    G+ G          
Sbjct: 98   ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154

Query: 160  -----------LARAADALD----PILDNEIEANED--------NLLPTI---FHVGQLV 193
                       +    DA D     + D E E+++D        N LP +   FH+GQ +
Sbjct: 155  FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214

Query: 194  SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
             C V++   L+   K+  K++I L++  S +      + V+   +  A VKSIEDHG  L
Sbjct: 215  RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNTYADEDLVKSTSIQCA-VKSIEDHGATL 273

Query: 251  HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
              GLP FTGF+ + +      +   PG +  G + +  DR+   + +++D    S    K
Sbjct: 274  DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325

Query: 310  DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
              +  SID ++PG +V    +SI +NG+        +G V++ HL+ TF   + K+ +  
Sbjct: 326  ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFAI 384

Query: 370  HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
               +  RI+                 L N+   S  KV  + +   +++++  L     +
Sbjct: 385  GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALRSTEGL 426

Query: 430  PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
             + P+             S   Y+ + D     V    V ++E      S    R+LG+ 
Sbjct: 427  DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+  G ++   ++ +V S G  ++ F G  KA  P  
Sbjct: 483  PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
            H+S+  +V P +KFK+G+++  RV+ V S+  + VT KK+LV    ++L ++S+Y  A +
Sbjct: 543  HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602

Query: 586  ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC + F+ G+ GF P SE+       P     +GQ V  +++
Sbjct: 603  IKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                  RRI  +  +   + ++     +++V   ++++  V   T ++V+V +   G  +
Sbjct: 663  DVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-R 721

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--L 752
            G I   HL+D  +E        ++ G E   L++  D  +    +S K SLI  A++  L
Sbjct: 722  GVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETL 781

Query: 753  P---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            P    D   ++ +  +H Y+ +I + G FV F G+  G    S AVD +  D+SK +Y+ 
Sbjct: 782  PLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYIN 841

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            QSV   +L  + +  +  LSLK                 +E+ +          S +K  
Sbjct: 842  QSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSW 889

Query: 870  EGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSV 919
            +   IGS+++ K+   + N   V+++   H         D Y  IT  +   +  +   V
Sbjct: 890  DDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDV 949

Query: 920  IQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            I+  I+   DV K+ + + ++ K         +    + + K+   ++ +++ + Q +  
Sbjct: 950  IKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTG 1008

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTA 1034
             V     N+L L++ P     I    ++D N   F +    N +SV     AL    ++ 
Sbjct: 1009 FVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASI 1063

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             R    + AI ++    +      S+  V   +   + +I    + L  G    G   IT
Sbjct: 1064 DREHGFVNAIGKSHVDIN-----MSTIKVDDELPGRVLKIAEKYVLLDLGNKVTGISFIT 1118

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
            +  +D S  ++  F + KI   +   +++  + NK         ELS++ +      I S
Sbjct: 1119 DALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRSATAKTRSIKS 1170

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
                   D+  G+ V G V  V+++   + +SR ++A  F+  S    S L+E+++ +  
Sbjct: 1171 -----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKP 1223

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
             + V G V++ +++ + + L LR  +     K +   +D     I  GD+  G I  +  
Sbjct: 1224 MQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKNVTD 1277

Query: 1273 GVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
               G+ V++    ++ G  H TE+ +    D  + +  G  VK  VL+ +   +    + 
Sbjct: 1278 --FGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK---QIS 1332

Query: 1331 LSLRSS 1336
            LSL++S
Sbjct: 1333 LSLKAS 1338



 Score = 47.8 bits (112), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 9/156 (5%)

Query: 1375 VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
            + +V+S G  + + + +  A V   ++SD  +  PE++F IG  V GRV+SV      V 
Sbjct: 518  ITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISVNSRG-NVH 576

Query: 1434 VTLKTS-----DSRTASQSEINNLSNL-HVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
            VTLK S     D+     S   N  N+    +  +  ++  +  G  I+     L G   
Sbjct: 577  VTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATVQVFKPNGCIISFFG-GLSGFLP 635

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
             SE+SE  V   E   R G+ V VK+L VD ++RRI
Sbjct: 636  NSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRI 671


>gi|326923909|ref|XP_003208175.1| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Meleagris
            gallopavo]
          Length = 2041

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 372/1393 (26%), Positives = 649/1393 (46%), Gaps = 141/1393 (10%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEI---EANE 179
            +T++ I  GM L G + EV   +LVI LP GL G   + + +DA   +L+ ++   E  E
Sbjct: 281  LTIQEICEGMLLLGCIKEVTFFELVISLPNGLTGFVPVTQISDAYSELLNEQVTQGELLE 340

Query: 180  D-NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 238
            D N L  ++  G LV C+V  ++  K   G+R I LS+    + KGL+   +  GM+L+ 
Sbjct: 341  DLNSLSDLYSPGMLVRCVVTSVE--KSADGRRSIKLSINPKNVNKGLNASALTSGMLLSG 398

Query: 239  YVKSIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRSIDRTRKV 293
            +V+S+EDHGY++  G+     FLP         A   G D+K G  L  ++  +    +V
Sbjct: 399  FVRSVEDHGYLIDIGVRGTHAFLPHQKAQNYIKAVKRGSDLKIGQSLNCLIEEVKNEGRV 458

Query: 294  VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
            V LS+D   V+  +  + +  ++  L+PG++V  +VQ +   G+ L+FL+ FTG VD  H
Sbjct: 459  VRLSADRSEVAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGISLTFLSSFTGIVDFMH 518

Query: 354  LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV---KVGDI 410
            +     T     +Y+ ++ V A IL   PTS+ V LTL    L     P+ +   ++G +
Sbjct: 519  VDPEKST-----NYSPNQVVKACILSTHPTSKVVHLTLRQAFLCPGGSPNQLSNDRIGAV 573

Query: 411  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
             ++S V    +  G + ++    +   A+  +  +++         +K G   + RI+ +
Sbjct: 574  VEESTVKAFYKQFGAVFELDDGML---AFARLKHLSKTRKSFKPAAFKAGCKHKCRIIDY 630

Query: 471  RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
              ++ +    LK    E     + D+  G V++GKV+++   G  V+   G+K L P  H
Sbjct: 631  SLMDEMCIVSLKHQIIEARFLRYQDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMH 690

Query: 531  MSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
            +++  + +P KK+ VG E+  RVL    + K++ +T KKTLV+SKL +LSSY +A   LI
Sbjct: 691  LADVILKQPEKKYNVGDEVRCRVLECNPEEKKLFLTLKKTLVQSKLPVLSSYEDAEPGLI 750

Query: 589  THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            THG++    + GC V+FYN V+G  P++EL  +P   P  ++H GQVVK  ++   P   
Sbjct: 751  THGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQE 810

Query: 649  RINLSFMMKPTRVSEDDL-----------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSK- 696
            R+ LSF +    V E               ++G +V   V     N + V ++  G    
Sbjct: 811  RLLLSFRLSSKPVPEGRTECTPKKKQQVKYQIGEMVDVKVLKKNENGLEVSILEDGDDVI 870

Query: 697  GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPS 754
              +PT HL+D + ++ ++   ++ G    +++ L ++   ++L  K ++I++ Q  Q+  
Sbjct: 871  AWLPTGHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQEEQVVR 930

Query: 755  DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
              S I P  ++ GYV  ++  G FV F   +TG AP+    D    D    + VGQ+V +
Sbjct: 931  SFSEIQPGVLLTGYVRKVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIA 990

Query: 815  NILDVNSETGRITLSLKQSCCSSTDA-----SFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             ++ ++ E  R+ L+LK S CSS D+     S + ++F   E+I  L   + +G   + +
Sbjct: 991  KVMSIDEEKQRVLLNLKVSECSSGDSAAESFSLLNQYFKEMEEIKNLLRRRESGLA-QCL 1049

Query: 870  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILD 926
               + G  ++  V +  + G   +    S V G+    TH+ L G  V  G   +  +L 
Sbjct: 1050 SELVPGKELQLVVQDVMEDG--SALFSGSCVRGWTVTATHYHLGGKKVVPGEKAKGLVLH 1107

Query: 927  VAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGVHQTVNAIVEIVKENY 985
            V      V +SL+   +                 K+E SK  L  +    AIV+ + E +
Sbjct: 1108 VDAITSKVYVSLREELL-----------------KKEPSKXRLTKNSQHPAIVQHIAEEF 1150

Query: 986  LVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS----------TA 1034
             ++SL +          S +N T +F  ++   GQ + AT+  + ++           T 
Sbjct: 1151 AIVSLLDSGRLAAVPIASHFNDTFRFDSEKMKVGQRIYATLKTVKANDLGVVLAVQDPTK 1210

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
                +  +  SET    +  A  K S  +G +V   +  +KP  + +       G IH +
Sbjct: 1211 KNAFVRDRKESETALEETLAAAVKHSLSLGDIVTGTVKSVKPTHVTVAIDDKLTGSIHAS 1270

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIAKSN----------KPDMKKSFLWELSIKPSM 1144
            ++ D+        ++  K GQ VTAR+I   +           P   +S + ELSI+P  
Sbjct: 1271 QILDEVPIYSFPTYT-LKAGQKVTARVIGGRDVNTHRYLPITHPHFTRS-VPELSIRP-- 1326

Query: 1145 LTVSEIGSK---LLFEECD----VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILD 1195
               SEI  K   +  + C+     ++GQ VT +V  Y +   W  + ++  ++ ++  L 
Sbjct: 1327 ---SEIEGKVETMRDDTCEKLGPYNVGQTVTCFVRKYNILKNWLEVEVAPDVRGRVPRLL 1383

Query: 1196 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
             +     L+  ++ F  G+A++  V   +  +  L L L   Q                 
Sbjct: 1384 LSLNTKVLKHPEKNFKNGQALSATVTGTDATETNLFLSLTGIQS---------------- 1427

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
             +  G I  G ++K++  + GL + +     G+V    L +     PLS +  G+ V+C 
Sbjct: 1428 -LEPGTITVGMVAKMIPHI-GLTITLPGGKTGKVSIFHLSDKYTESPLSDFKIGKVVRCY 1485

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L           ++LSLR S   ++  NSS +          +  I+D+    +++GYV
Sbjct: 1486 ILS-----NENGKIQLSLRQS--RLNPKNSSKVE------DAEITSIKDVKKGQLLRGYV 1532

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRV 1432
            K+VT  G F  LS  L  ++L  N+S  +V+     EK  P GKL+  +VL V      V
Sbjct: 1533 KSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLDVNKNENHV 1592

Query: 1433 EVTLKTSDSRTAS 1445
            E++L   D+   S
Sbjct: 1593 ELSLLPEDTEMPS 1605



 Score =  276 bits (705), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 133/265 (50%), Positives = 185/265 (69%), Gaps = 3/265 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P++ D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI  REE EKLN+W
Sbjct: 1772 PQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQEKLNVW 1831

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            VA  NLEN YG   EE ++KVF+RA+QY +P KV   L  +Y  +E+ K A+EL + M++
Sbjct: 1832 VALLNLENMYGT--EETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLR 1889

Query: 1778 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
            +F+    VWL+    LLKQ Q E    +++RAL +LP  +H+  IS+ A LEF+ G  + 
Sbjct: 1890 RFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFRFGDPEH 1949

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
             +++FE  L+ YPKRTD+WSIY+D  I+ G    +R +FER I L+L PKKMKF FK+YL
Sbjct: 1950 AKALFESTLNSYPKRTDIWSIYMDIMIKQGSQKEVRDIFERVIHLNLAPKKMKFFFKRYL 2009

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVES 1921
            +YEK  G  E +  VK  A+EYVE+
Sbjct: 2010 DYEKKYGTTETVMAVKTAALEYVEA 2034



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 8/173 (4%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
            + +D+    ++QG V ++   G  + ++  +   V   +L+D  ++ PEK++ +G  V  
Sbjct: 652  RYQDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLADVILKQPEKKYNVGDEVRC 711

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITI 1477
            RVL   P  K++ +TLK    +T  QS++  LS   +   G I  G +     +G  +  
Sbjct: 712  RVLECNPEEKKLFLTLK----KTLVQSKLPVLSSYEDAEPGLITHGFVVCAREFGCIVKF 767

Query: 1478 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             N ++ GL   +ELS + +   + ++  G+ VKV +LK + ++ R+ L  + S
Sbjct: 768  YN-DVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQERLLLSFRLS 819



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 145/337 (43%), Gaps = 32/337 (9%)

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEG 1260
            L++ ++++++G  V   VL  N E+K L L L+  +  +  K   +S+  D     I  G
Sbjct: 696  LKQPEKKYNVGDEVRCRVLECNPEEKKLFLTLK--KTLVQSKLPVLSSYEDAEPGLITHG 753

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
             +V  R         G +V+    + G V   EL +  +S P   + +GQ VK  VL+  
Sbjct: 754  FVVCAR-------EFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCE 806

Query: 1321 -RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
             +  R      LS +   +G +            TP K  +    +   + V+   KN  
Sbjct: 807  PQQERLLLSFRLSSKPVPEGRTEC----------TPKKKQQVKYQIGEMVDVKVLKKN-- 854

Query: 1380 SKGCFIMLSRKLD---AKVLLSNLSDGYVESPEKEFPIGKL-VAGRVLSVEPLSKRVEVT 1435
              G  + +    D   A +   +LSD    S      + +  V  RV+ +     R+ + 
Sbjct: 855  ENGLEVSILEDGDDVIAWLPTGHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRI-IL 913

Query: 1436 LKTSDSRTASQSE--INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
             + S   +A Q E  + + S +  G ++ G +++V  +G+F+      + GL     +S+
Sbjct: 914  CRKSAVISAVQEEQVVRSFSEIQPGVLLTGYVRKVMPFGVFVEFP-FGVTGLAPKVSMSD 972

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
              V + +  +  G+ V  K++ +D+EK+R+ L +K S
Sbjct: 973  KFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLNLKVS 1009


>gi|414883928|tpg|DAA59942.1| TPA: hypothetical protein ZEAMMB73_646840 [Zea mays]
          Length = 376

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/331 (63%), Positives = 266/331 (80%), Gaps = 14/331 (4%)

Query: 1597 LEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1656
            LE N+ +   ++ NG   N   +D          +  KK+ +++RE EI A EER L++D
Sbjct: 50   LEDNISNTCLEIANGTEANAKKSD----------KQLKKEARKQRELEISAMEERALQED 99

Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1716
             P+TPD+FE+LVRSSPNSSF+WIKYMA +L +ADV+KAR++AERAL+TI  REE EKLN+
Sbjct: 100  IPQTPDDFEKLVRSSPNSSFIWIKYMATLLDLADVKKARAVAERALKTIIPREEEEKLNV 159

Query: 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
            WVAYFNLENEYG+P E+AV KVFQRALQYCDPKK+HLALL +YERTEQ +LADELL ++ 
Sbjct: 160  WVAYFNLENEYGSPREDAVKKVFQRALQYCDPKKLHLALLAMYERTEQYELADELLDRIT 219

Query: 1777 KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
            K+FK SCK+WL R+Q  LKQ +  E ++A+V RALLSLP  K IKF+SQTAILEFK GV 
Sbjct: 220  KRFKTSCKIWLCRIQFALKQGKDVEYIKAIVNRALLSLPHRKRIKFLSQTAILEFKCGVP 279

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS-LSLPPKKMKFLFK 1893
            + GRS FE IL EYPKRTDLWS+YLDQEIRLGDV++IR LFER ++ L+LPPKKM+FLFK
Sbjct: 280  EEGRSRFELILREYPKRTDLWSVYLDQEIRLGDVEVIRALFERRVACLTLPPKKMQFLFK 339

Query: 1894 KYLEYEKSVGEE-ERIEYVKQKAMEYVESTL 1923
            KYL +EKS+G++ ERI+ V+QKA+EYV+S+L
Sbjct: 340  KYLNFEKSLGKDNERIQLVQQKAIEYVQSSL 370


>gi|291404761|ref|XP_002718640.1| PREDICTED: programmed cell death 11 isoform 1 [Oryctolagus cuniculus]
          Length = 1875

 Score =  419 bits (1076), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 399/1479 (26%), Positives = 678/1479 (45%), Gaps = 174/1479 (11%)

Query: 54   FPRGGGH---------SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETV 104
            FPRGG           S  Q    +   ++  E E+ +R   +K   K KK + +  E  
Sbjct: 8    FPRGGTRKKSDHKSEKSFPQSVEQDNLFDISTEEESTKRKKSQKGPAKTKKLKSEERERS 67

Query: 105  DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
              +   F              ++++++  GM++ G V EVNE +LVI LP GL+G  +  
Sbjct: 68   KSVREKF------------EILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVT 115

Query: 165  DALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLR 217
            +  D   +  NE    E+ L     LP +F  G LV C+V  L   +K  GKR + LSL 
Sbjct: 116  EICDAYTEKLNEQMTQEEPLKDLLRLPELFAPGMLVRCVVRSLAITEK--GKRSVKLSLN 173

Query: 218  LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGI 272
               + K LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G 
Sbjct: 174  PKNVNKVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLPLQKAQEYIRQKNKGA 233

Query: 273  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
            ++K G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +
Sbjct: 234  NLKVGQYLHCIIEEVKGDGGVVSLSVGHAEVSAAIASEEQSWTLNNLLPGLVVKAQVQKV 293

Query: 333  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
               G+ L+FL +FTG VD  HL      T + N     + V A IL V P ++ V L+L 
Sbjct: 294  TRFGLTLNFLKFFTGLVDFMHLDPKKVGTYFSN-----QAVRACILCVHPRTKVVRLSLR 348

Query: 393  PYLLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
            P  L    P + +    +G + D   V       G    + +  +   AY  +S +++ +
Sbjct: 349  PIFLQPGRPLTRLSCQHLGAVLDDVPVQGFFIKAGATFSLKNGVL---AYARLSHLSDSK 405

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
                 + +K G+  + RI+ +  L+ L    L+ S  E   F + D+KPG V+KG V+ +
Sbjct: 406  KVFKPEAFKPGNTHKCRIIDYSPLDELVLLSLRTSIIEAQYFRYHDIKPGAVIKGTVLTI 465

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKK 567
              +G +++    ++ L P  H+++  +  P KK+ +G EL  RVL    ++K++ +T KK
Sbjct: 466  KPYGILLKVGERIRGLVPPSHLADILMKNPEKKYHIGEELKCRVLLCDPEAKKLIMTLKK 525

Query: 568  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
            TLV+SKL  ++ YA+A   L THG I +++ +GC V+FYN VQG  P+ EL      +P 
Sbjct: 526  TLVESKLPPITCYADAQPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSAQYIPDPG 585

Query: 628  SMYHVGQVVKCRIMSSIPASRRINLSFMM------KPTRVSEDDLVKLGSLVSGVVDV-- 679
            S+++ GQVVK  +++S P+  R+ LSF +      K     +      G  V  +VDV  
Sbjct: 586  SVFYTGQVVKVVVLNSEPSKERMLLSFKLLSDGEPKKEHAGQGQKKGRGVTVGQLVDVKV 645

Query: 680  --VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
               T + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L     +L
Sbjct: 646  LEKTKDGLEVAVLPHNIP-AFLPTSHLSDHVANGPLLYHWLQAGDILHRVLCLSQSEKHL 704

Query: 738  LLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
             L  K +L+++ +  Q P + S IHP  ++ G+V +I + G FV+F   L+G AP++   
Sbjct: 705  FLCRKPALVSTVEGDQDPKNFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMS 764

Query: 796  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
            D      S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +      LL + +  
Sbjct: 765  DKFVTSPSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCMLGDVA-STSLLLLSQCLEE 823

Query: 856  LQS-----SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THH 907
            LQ      S  +   ++ +     G V++  V E  + G V+       V G +   + +
Sbjct: 824  LQGVRSLMSNRDSVLIQTLAKMTPGMVLDLMVQEVLEDGCVLF--SGGPVPGLVLKASKY 881

Query: 908  QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 967
              AG  VESG   +  IL+V   +  V +SL    +D        R+A+K K+  E    
Sbjct: 882  HRAGQEVESGQKKKVVILNVDMLKLEVHVSLLQNLVD--------RKAKKLKKGSE---- 929

Query: 968  LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVM 1026
               HQ   AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+ 
Sbjct: 930  ---HQ---AIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLK 983

Query: 1027 ALPSSSTAGRLLLLLKAISETETSSSKRAK------------------KKSSYDVGSLVQ 1068
                  T G LL +   +++     +++                    KK +  +G  V 
Sbjct: 984  TTEPGVT-GFLLAVEGPVAKRTMRQTRKDSEAVDEDEEVDPALAVGPIKKHALSIGDKVT 1042

Query: 1069 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----K 1124
              +  +KP  + +    G  G IH +++ DD   V  +  +  K+G+TVTAR+I     K
Sbjct: 1043 GTVKSVKPTHVVVTLEDGITGCIHASQILDD-VPVGTSPTAKLKVGKTVTARVIGGRDVK 1101

Query: 1125 SNK--PDMKKSFLW---ELSIKPSML-----------TVSEIGSKLLFEECDVSIGQRVT 1168
            + K  P     F+    ELS++PS L           +VS +     ++      GQ VT
Sbjct: 1102 TFKFLPISHPRFIRTIPELSVRPSELEKDGHTALNTYSVSPVEKIRQYQ-----AGQTVT 1156

Query: 1169 GYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
             ++  Y V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+     
Sbjct: 1157 CFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKCPDKKFRVGQALKATVVGPVSS 1216

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
            K  L L L             I    ++    +G++  GR+ ++     GL V       
Sbjct: 1217 KAFLCLSL-------------IGPHKLE----KGEVAMGRVVEVTPN-KGLTVSFPFGKK 1258

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1346
            GRV    + +     PL  +   + V+C VL     +     + LSLR      SS  + 
Sbjct: 1259 GRVSIFHVSDSYSETPLQDFVPQKIVRCYVLSTEEQM-----LTLSLR------SSRTNP 1307

Query: 1347 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
            +  + V+ P   ++ I+D+    +++GYV++V   G    L   +       ++S  Y  
Sbjct: 1308 ETKSKVEDP--EIDSIQDVKEGQLLRGYVRSVQPNGVLFSLGPSVTGLADYPHVSQ-YSP 1364

Query: 1407 SPE----KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            S +    K  P GKL+  +VL +      VE++    D+
Sbjct: 1365 SEKDLYNKYLPEGKLLTAKVLRLNHRQDLVELSFLPCDT 1403



 Score =  287 bits (734), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 149/305 (48%), Positives = 209/305 (68%), Gaps = 11/305 (3%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDA--------PRTPDEFERLVRSSPNSSFV 1677
            DEK +   KKK K+ERE E + AE+ L   +A        P + DEF+RLV SS NSS +
Sbjct: 1566 DEKPHPATKKKSKKERELEKQKAEKELSRIEAALMDPGRQPESADEFDRLVLSSANSSIL 1625

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1626 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLGK 1683

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1797
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1684 VFERAVQYNEPLKVFLHLADIYTKSEKFQEAAELYNRMLKRFRQEKAVWIKYGAFLLRRS 1743

Query: 1798 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            Q G    V+QRAL  LP  +H+  I + A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1744 QAGASHRVLQRALECLPAKEHMDVIVKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1803

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1804 VYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1863

Query: 1917 EYVES 1921
            EYVE+
Sbjct: 1864 EYVEA 1868



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 148/627 (23%), Positives = 244/627 (38%), Gaps = 93/627 (14%)

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDY---NTQK 1009
            ++AQ+  R++    +L V Q ++ I+E VK +  V+SL     S+G+A VS       Q 
Sbjct: 220  QKAQEYIRQKNKGANLKVGQYLHCIIEEVKGDGGVVSL-----SVGHAEVSAAIASEEQS 274

Query: 1010 FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQA 1069
            +     L G  V A V  +   +  G  L  LK  +          KK  +Y     V+A
Sbjct: 275  WTLNNLLPGLVVKAQVQKV---TRFGLTLNFLKFFTGLVDFMHLDPKKVGTYFSNQAVRA 331

Query: 1070 EITEIKP----LELRLKFGIGFHGRI-------HITEVNDDKSNVVENLF------SNFK 1112
             I  + P    + L L+      GR        H+  V DD    V+  F       + K
Sbjct: 332  CILCVHPRTKVVRLSLRPIFLQPGRPLTRLSCQHLGAVLDDVP--VQGFFIKAGATFSLK 389

Query: 1113 IGQTVTARIIAKSNKPDMKKSFLWELSIKPS------MLTVSEIGSKLL----------- 1155
             G    AR+   S+  D KK F  E + KP       ++  S +   +L           
Sbjct: 390  NGVLAYARL---SHLSDSKKVFKPE-AFKPGNTHKCRIIDYSPLDELVLLSLRTSIIEAQ 445

Query: 1156 -FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-----QRR 1209
             F   D+  G  + G V  +     LL +   ++  +        PS L +      +++
Sbjct: 446  YFRYHDIKPGAVIKGTVLTIKPYGILLKVGERIRGLV-------PPSHLADILMKNPEKK 498

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
            +HIG+ +   VL  + E K L + L+          +    D        G I+  R+  
Sbjct: 499  YHIGEELKCRVLLCDPEAKKLIMTLKKTLVESKLPPITCYADAQPGLQTHGVII--RVKD 556

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
                  G +V+    + G V   EL    + DP S +  GQ VK  VL    +       
Sbjct: 557  Y-----GCIVKFYNDVQGLVPKHELSAQYIPDPGSVFYTGQVVKVVVLNSEPSKERML-- 609

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLS 1388
             LS +   DG      +         G+  +K   ++   +V   V   T  G  + +L 
Sbjct: 610  -LSFKLLSDGEPKKEHA---------GQGQKKGRGVTVGQLVDVKVLEKTKDGLEVAVLP 659

Query: 1389 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG----RVLSVEPLSKRVEVTLKTS-DSRT 1443
              + A +  S+LSD     P        L AG    RVL +    K + +  K +  S  
Sbjct: 660  HNIPAFLPTSHLSDHVANGP---LLYHWLQAGDILHRVLCLSQSEKHLFLCRKPALVSTV 716

Query: 1444 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1503
                +  N S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +
Sbjct: 717  EGDQDPKNFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSPSDHF 775

Query: 1504 RAGEKVKVKILKVDKEKRRISLGMKSS 1530
              G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 776  VEGQTVVAKVTNVDEEKQRMLLSLRLS 802



 Score = 45.8 bits (107), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 101/207 (48%), Gaps = 18/207 (8%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +L++++ G  S+ +  L   +  P K LEK E      +  G V  VT +KG  +
Sbjct: 1200 FRVGQALKATVVGPVSSKAF-LCLSLIGPHK-LEKGE------VAMGRVVEVTPNKGLTV 1251

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                    +V + ++SD Y E+P ++F   K+V   VLS E   + + ++L++S +   +
Sbjct: 1252 SFPFGKKGRVSIFHVSDSYSETPLQDFVPQKIVRCYVLSTE--EQMLTLSLRSSRTNPET 1309

Query: 1446 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITI--ENTNLVGLCHVSELSEDHVDN 1498
            +S     EI+++ ++  G ++ G ++ V+  G+  ++    T L    HVS+ S    D 
Sbjct: 1310 KSKVEDPEIDSIQDVKEGQLLRGYVRSVQPNGVLFSLGPSVTGLADYPHVSQYSPSEKDL 1369

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISL 1525
                   G+ +  K+L+++  +  + L
Sbjct: 1370 YNKYLPEGKLLTAKVLRLNHRQDLVEL 1396


>gi|440640711|gb|ELR10630.1| hypothetical protein GMDG_04899 [Geomyces destructans 20631-21]
          Length = 1792

 Score =  419 bits (1076), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 356/1320 (26%), Positives = 632/1320 (47%), Gaps = 153/1320 (11%)

Query: 669  LGSLVSGVVDVVTPNAVVV---YV-IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
            +G +V G VD +  N   +   +V +A G + G +P  H+AD   H    K   K G   
Sbjct: 555  IGEVVKGKVDKLFINEAGIGGLFVKLADGIT-GLVPEMHMADVKFHHPEKK--FKQGLSV 611

Query: 725  D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
              ++L  D       L+ K +L+NS   +      I P S   G + +I+  G  V+F G
Sbjct: 612  TARVLSTDLSKRQFRLTLKKALVNSENPVFKSYEDIEPGSQSPGTIISILPGGAVVQFYG 671

Query: 784  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
             + GF P S+  +    D S+ ++VGQ V  ++L+V+    R+T+S K            
Sbjct: 672  TVRGFLPVSEMSESYIQDPSQHFHVGQVVNVHVLNVDPAAARLTVSCKDPAAFGLSQQSS 731

Query: 844  QEHFLLEEKIAMLQSSKHNGS-----ELKWVEGFI-IGSVIEGKVHESNDFGVVVSFEEH 897
             +   + E ++   + K N       EL  +   + +G + +G   E+ +F         
Sbjct: 732  LKKLRIGEIVSATVTEKSNDDISVELELSGLRAILPVGHLTDGS--EAKNFS-------- 781

Query: 898  SDVYGFITHHQLAGATVESGSVIQA-AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
                        A   +  G  +Q  A++D  +  RL+ L+ K+  +         + A 
Sbjct: 782  ------------AFKKIRVGQTLQNLAVIDKVEKNRLITLTNKSNLV---------KAAN 820

Query: 957  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 1016
            ++   RE + D+  ++ V+  V+ +    + +        +   S      Q  P     
Sbjct: 821  ERTLLREFA-DVKENKIVHGFVKNITPTAVFVQFGGGVTGLLPKSKLQDEAQTLPDFGLR 879

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETS---------SSKRA--------KKKS 1059
              QS+ A V+++  S    R LL +K I+ +  S          S++A            
Sbjct: 880  RLQSLTAKVLSVDQSEK--RFLLSVKDINISVPSVDGELVYHGESQKAINPVDESITAAE 937

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTV 1117
             + +G +  A I  +K  ++ ++      GRI ++EV +    + +  +    F   QT+
Sbjct: 938  DFTLGRVTMARIASVKETQINVQLANNIQGRIDVSEVFESWEEIKDRKHPLKQFSAKQTI 997

Query: 1118 TARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVT 1168
              R++   +  + +         K+ ++ELS K +  T+      L   +  V +G    
Sbjct: 998  PVRVLGIHDAKNHRFLPITHTAGKTAVFELSAKLTK-TIESAPEALTLNK--VKVGSSWI 1054

Query: 1169 GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1228
             +V  V ++   + IS +++ ++  LD + + S L   + +F +G A+   V  I+    
Sbjct: 1055 AFVNNVRDDCLWVNISPNVRGRIGALDISDDVSLLNNLESKFPVGSAIKVSVTGIDVANN 1114

Query: 1229 LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGR 1288
             L L  R  +   S  +      +M        +V  R++K+      ++VQ+   + G 
Sbjct: 1115 RLDLSGRSARGSSSALSFQDLKKDM--------VVPARVTKVTER--QIMVQLSDKVSGP 1164

Query: 1289 VHFTELKNICVSDPLSGYDEGQFVKCKVLEI---SRTVRGTFHVELSLRSSLDGMSSTNS 1345
            V+ T+L +       + Y +   V+  + ++   ++ +R T      L SSL    +  S
Sbjct: 1165 VNLTDLTDDFSDANPTIYSKNDIVRVCITDVDVPNKRIRLTTRPSRVLNSSLPVKDAEVS 1224

Query: 1346 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1405
            S               +  L  N +V+G+V NV   G F+ L   + A   +S+LSD Y+
Sbjct: 1225 S---------------VAQLKVNDVVRGFVNNVAENGIFVSLGGNVTAYTRVSDLSDAYI 1269

Query: 1406 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQI 1465
            +  +  F + +LV G+V++ +P    V+++LK+S       + I+ L++L VG  + G+I
Sbjct: 1270 KEWKPSFQVDQLVKGKVIAADPALNHVQLSLKSSVVDNDYVAPIS-LNDLEVGQTITGKI 1328

Query: 1466 KRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1524
            ++VE +G+FI ++ + N+ GLCH SE++E+ V +++ +Y  G+ VK K+LKV+ + RR+S
Sbjct: 1329 RKVEDFGVFIVVDGSMNVSGLCHRSEMTENRVTDVKKLYSEGDAVKAKVLKVELDNRRVS 1388

Query: 1525 LGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLV 1584
             G+++SYFK+     Q  S+EE D  I++         +E   +   D D +SE+G S  
Sbjct: 1389 FGLRASYFKD-----QSESDEEMDYGIKDG--------MEGVQLGSDD-DADSEEGNSGN 1434

Query: 1585 LAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEA-------KTIDEKNNR------ 1631
            L ++++  ++     + DD  PDM++ + Q  G   EA        T+D+ + +      
Sbjct: 1435 LERVDALVAL-----SGDDSDPDMEDALQQPSGLPLEAGGFNWTASTLDDADQQIGVDSE 1489

Query: 1632 ----HAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1687
                 +  K+K  R+  I+      L+ + P++  +FERL+ S P+SS +WI+YMAF + 
Sbjct: 1490 EEGLASASKKKARRKPLIKVDRTGELDANGPQSTSDFERLLLSEPDSSQLWIEYMAFQVK 1549

Query: 1688 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1747
            ++++ KAR +AERA++TIN+REE EK+N+W+A  NLEN YG+  ++   +VF+RA +Y D
Sbjct: 1550 LSELAKAREVAERAIRTINMREEAEKMNVWIALLNLENAYGS--DDTTEEVFKRACEYND 1607

Query: 1748 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL--LKQQQEGVQAVV 1805
              ++H  L  +Y ++ ++  ADEL   +IKKF      W      L       +   A++
Sbjct: 1608 AFEIHERLTSIYIQSGKHTKADELFQVLIKKFSQYPNAWYNYAHFLHYTLSSPDRAWALL 1667

Query: 1806 QRALLSLPRHKHIKFISQTAILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863
             RA+ SLP H H+    + A LEF   +G  +RGR+ FEG+L+ +PKR DLW+  LD EI
Sbjct: 1668 PRAIQSLPSHNHLTLTIKFAALEFHSPHGSPERGRTTFEGVLATFPKRLDLWNQLLDLEI 1727

Query: 1864 RLGDVDLIRGLFER-AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922
            + GD  ++R LFER A S  L PK  K  FK++ E+E   G+ +  E VK KA+E+V +T
Sbjct: 1728 QQGDEGMVRALFERVARSKDLKPKGAKAWFKRWSEWEGKYGDAKSQEKVKAKAIEWVRAT 1787



 Score =  223 bits (569), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 228/850 (26%), Positives = 379/850 (44%), Gaps = 88/850 (10%)

Query: 54  FPRGGGHSLTQRERDEIH----------------AEVDAEFEAVERGLHKKNKKKKKKTE 97
           FPRGG   LT  E  +I+                A+ D + EA      KK K+K K T 
Sbjct: 70  FPRGGASVLTPLEHKQINIDATRDVLFEHETASRAKADGDSEAATSHGGKKRKQKSKGT- 128

Query: 98  RKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL 157
           + AN   D+   +  +G+S            K +  G  + G V+++N  D+ + LP  L
Sbjct: 129 KDANVKGDEGDDIRIEGLS-----------YKRLVPGSLVLGQVSKINIHDIALALPNNL 177

Query: 158 RG---LARAADALDPILDNEIEANEDNL------------LPTIFHVGQLVSCIVLQLDD 202
            G   L   +  L   ++  + A +               L  +F VGQ +   V+  ++
Sbjct: 178 TGYVPLTSISGKLTERVEMLVAAYDGASDDDSSSIADDIDLNDLFSVGQYLRAFVVSTNE 237

Query: 203 DKK---EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSF 257
           +     E+GKR+I LSL+      G++ + +    ++ A V S+EDHG I+  GL   + 
Sbjct: 238 NNASGAEVGKRRIELSLQPQKANSGITAKELAPNSMIMASVVSVEDHGIIMDIGLQKSAI 297

Query: 258 TGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLKGI 314
            GF+    +     ++ ++ G ++  ++  +    K+V LS+D   +  SK  T      
Sbjct: 298 GGFMSSKEIGYAIEMNTIQEGAVMLCMITGLSSNGKIVKLSADLQKIANSKKPTYLSDAP 357

Query: 315 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
           ++D  +PG  V   +  I   GV    +     T D+ H   +    + +  Y    KV 
Sbjct: 358 TVDAFLPGTAVEFLLADITPRGVAGKVMGSIDVTADLIHSGLSNAGKDLEKKYKVGSKVK 417

Query: 375 ARILFVDPT--SRAVGLTLNPYLL-----------HNRAPPSHVKVGDIYDQSKVVRVDR 421
            RI+   P    R +G++L  +++               P   + +  I +++ V +V  
Sbjct: 418 GRIICTFPNVEPRKLGISLLDHVMSLSTQQAQKNAQKHDPLQILPLSSIIEEATVKKVQP 477

Query: 422 GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLAT 478
           G+GL +DI    V+   +V IS VA+ +V  L +    YK  S  R R++G+  L+G+  
Sbjct: 478 GIGLFVDIGVKGVN--GFVHISRVADSKVETLSESVGPYKVDSTHRGRVVGYNSLDGIYL 535

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSFGAI-VQFPGGVKALCPLPHMSE 533
             L+    E       D+  G VVKGKV    I     G + V+   G+  L P  HM++
Sbjct: 536 VSLEQRVLEQPFLQIEDLTIGEVVKGKVDKLFINEAGIGGLFVKLADGITGLVPEMHMAD 595

Query: 534 FEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 591
            +   P KKFK G  +  RVL   +  ++  +T KK LV S+  +  SY +      + G
Sbjct: 596 VKFHHPEKKFKQGLSVTARVLSTDLSKRQFRLTLKKALVNSENPVFKSYEDIEPGSQSPG 655

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            I  I   G  V+FY  V+GF P SE+      +PS  +HVGQVV   +++  PA+ R+ 
Sbjct: 656 TIISILPGGAVVQFYGTVRGFLPVSEMSESYIQDPSQHFHVGQVVNVHVLNVDPAAARLT 715

Query: 652 LSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
           +S         ++ S    +++G +VS  V   + + + V +   G  +  +P  HL D 
Sbjct: 716 VSCKDPAAFGLSQQSSLKKLRIGEIVSATVTEKSNDDISVELELSGL-RAILPVGHLTDG 774

Query: 708 LE--HATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ--LPSDASHIHP 761
            E  + +  K  I+ G     L V+D    N L  L+ K +L+ +A +  L  + + +  
Sbjct: 775 SEAKNFSAFKK-IRVGQTLQNLAVIDKVEKNRLITLTNKSNLVKAANERTLLREFADVKE 833

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
           N +VHG+V NI  T  FV+F G +TG  P+SK  D  +          QS+ + +L V+ 
Sbjct: 834 NKIVHGFVKNITPTAVFVQFGGGVTGLLPKSKLQDEAQTLPDFGLRRLQSLTAKVLSVDQ 893

Query: 822 ETGRITLSLK 831
              R  LS+K
Sbjct: 894 SEKRFLLSVK 903



 Score = 48.9 bits (115), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 18/248 (7%)

Query: 323  MMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDP 382
            M+V  RV  + E  +M+      +G V++  L + F   N    Y+++  V   I  VD 
Sbjct: 1139 MVVPARVTKVTERQIMVQLSDKVSGPVNLTDLTDDFSDAN-PTIYSKNDIVRVCITDVDV 1197

Query: 383  TSRAVGLTLNP-YLLHNRAPPSHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPV 434
             ++ + LT  P  +L++  P    +V  +  Q KV  V RG        G+ + +     
Sbjct: 1198 PNKRIRLTTRPSRVLNSSLPVKDAEVSSVA-QLKVNDVVRGFVNNVAENGIFVSLGG--- 1253

Query: 435  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVF 491
            +  AY  +SD+++  +++ +  ++    V+ +++            LK+S  +       
Sbjct: 1254 NVTAYTRVSDLSDAYIKEWKPSFQVDQLVKGKVIAADPALNHVQLSLKSSVVDNDYVAPI 1313

Query: 492  THSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            + +D++ G  + GK+  V+ FG  +   G   V  LC    M+E  +    K +  G  +
Sbjct: 1314 SLNDLEVGQTITGKIRKVEDFGVFIVVDGSMNVSGLCHRSEMTENRVTDVKKLYSEGDAV 1373

Query: 550  VFRVLGVK 557
              +VL V+
Sbjct: 1374 KAKVLKVE 1381


>gi|291404763|ref|XP_002718641.1| PREDICTED: programmed cell death 11 isoform 2 [Oryctolagus cuniculus]
          Length = 1860

 Score =  419 bits (1076), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 399/1479 (26%), Positives = 678/1479 (45%), Gaps = 174/1479 (11%)

Query: 54   FPRGGGH---------SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETV 104
            FPRGG           S  Q    +   ++  E E+ +R   +K   K KK + +  E  
Sbjct: 8    FPRGGTRKKSDHKSEKSFPQSVEQDNLFDISTEEESTKRKKSQKGPAKTKKLKSEERERS 67

Query: 105  DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
              +   F              ++++++  GM++ G V EVNE +LVI LP GL+G  +  
Sbjct: 68   KSVREKF------------EILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVT 115

Query: 165  DALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLR 217
            +  D   +  NE    E+ L     LP +F  G LV C+V  L   +K  GKR + LSL 
Sbjct: 116  EICDAYTEKLNEQMTQEEPLKDLLRLPELFAPGMLVRCVVRSLAITEK--GKRSVKLSLN 173

Query: 218  LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGI 272
               + K LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G 
Sbjct: 174  PKNVNKVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLPLQKAQEYIRQKNKGA 233

Query: 273  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
            ++K G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +
Sbjct: 234  NLKVGQYLHCIIEEVKGDGGVVSLSVGHAEVSAAIASEEQSWTLNNLLPGLVVKAQVQKV 293

Query: 333  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
               G+ L+FL +FTG VD  HL      T + N     + V A IL V P ++ V L+L 
Sbjct: 294  TRFGLTLNFLKFFTGLVDFMHLDPKKVGTYFSN-----QAVRACILCVHPRTKVVRLSLR 348

Query: 393  PYLLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
            P  L    P + +    +G + D   V       G    + +  +   AY  +S +++ +
Sbjct: 349  PIFLQPGRPLTRLSCQHLGAVLDDVPVQGFFIKAGATFSLKNGVL---AYARLSHLSDSK 405

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
                 + +K G+  + RI+ +  L+ L    L+ S  E   F + D+KPG V+KG V+ +
Sbjct: 406  KVFKPEAFKPGNTHKCRIIDYSPLDELVLLSLRTSIIEAQYFRYHDIKPGAVIKGTVLTI 465

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKK 567
              +G +++    ++ L P  H+++  +  P KK+ +G EL  RVL    ++K++ +T KK
Sbjct: 466  KPYGILLKVGERIRGLVPPSHLADILMKNPEKKYHIGEELKCRVLLCDPEAKKLIMTLKK 525

Query: 568  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
            TLV+SKL  ++ YA+A   L THG I +++ +GC V+FYN VQG  P+ EL      +P 
Sbjct: 526  TLVESKLPPITCYADAQPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSAQYIPDPG 585

Query: 628  SMYHVGQVVKCRIMSSIPASRRINLSFMM------KPTRVSEDDLVKLGSLVSGVVDV-- 679
            S+++ GQVVK  +++S P+  R+ LSF +      K     +      G  V  +VDV  
Sbjct: 586  SVFYTGQVVKVVVLNSEPSKERMLLSFKLLSDGEPKKEHAGQGQKKGRGVTVGQLVDVKV 645

Query: 680  --VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
               T + + V V+        +PT HL+DH+ +  ++   ++ G    ++L L     +L
Sbjct: 646  LEKTKDGLEVAVLPHNIP-AFLPTSHLSDHVANGPLLYHWLQAGDILHRVLCLSQSEKHL 704

Query: 738  LLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
             L  K +L+++ +  Q P + S IHP  ++ G+V +I + G FV+F   L+G AP++   
Sbjct: 705  FLCRKPALVSTVEGDQDPKNFSEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMS 764

Query: 796  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
            D      S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +      LL + +  
Sbjct: 765  DKFVTSPSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCMLGDVA-STSLLLLSQCLEE 823

Query: 856  LQS-----SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THH 907
            LQ      S  +   ++ +     G V++  V E  + G V+       V G +   + +
Sbjct: 824  LQGVRSLMSNRDSVLIQTLAKMTPGMVLDLMVQEVLEDGCVLF--SGGPVPGLVLKASKY 881

Query: 908  QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD 967
              AG  VESG   +  IL+V   +  V +SL    +D        R+A+K K+  E    
Sbjct: 882  HRAGQEVESGQKKKVVILNVDMLKLEVHVSLLQNLVD--------RKAKKLKKGSE---- 929

Query: 968  LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVM 1026
               HQ   AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+ 
Sbjct: 930  ---HQ---AIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLK 983

Query: 1027 ALPSSSTAGRLLLLLKAISETETSSSKRAK------------------KKSSYDVGSLVQ 1068
                  T G LL +   +++     +++                    KK +  +G  V 
Sbjct: 984  TTEPGVT-GFLLAVEGPVAKRTMRQTRKDSEAVDEDEEVDPALAVGPIKKHALSIGDKVT 1042

Query: 1069 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----K 1124
              +  +KP  + +    G  G IH +++ DD   V  +  +  K+G+TVTAR+I     K
Sbjct: 1043 GTVKSVKPTHVVVTLEDGITGCIHASQILDD-VPVGTSPTAKLKVGKTVTARVIGGRDVK 1101

Query: 1125 SNK--PDMKKSFLW---ELSIKPSML-----------TVSEIGSKLLFEECDVSIGQRVT 1168
            + K  P     F+    ELS++PS L           +VS +     ++      GQ VT
Sbjct: 1102 TFKFLPISHPRFIRTIPELSVRPSELEKDGHTALNTYSVSPVEKIRQYQ-----AGQTVT 1156

Query: 1169 GYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
             ++  Y V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+     
Sbjct: 1157 CFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKCPDKKFRVGQALKATVVGPVSS 1216

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
            K  L L L             I    ++    +G++  GR+ ++     GL V       
Sbjct: 1217 KAFLCLSL-------------IGPHKLE----KGEVAMGRVVEVTPN-KGLTVSFPFGKK 1258

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1346
            GRV    + +     PL  +   + V+C VL     +     + LSLR      SS  + 
Sbjct: 1259 GRVSIFHVSDSYSETPLQDFVPQKIVRCYVLSTEEQM-----LTLSLR------SSRTNP 1307

Query: 1347 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
            +  + V+ P   ++ I+D+    +++GYV++V   G    L   +       ++S  Y  
Sbjct: 1308 ETKSKVEDP--EIDSIQDVKEGQLLRGYVRSVQPNGVLFSLGPSVTGLADYPHVSQ-YSP 1364

Query: 1407 SPE----KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            S +    K  P GKL+  +VL +      VE++    D+
Sbjct: 1365 SEKDLYNKYLPEGKLLTAKVLRLNHRQDLVELSFLPCDT 1403



 Score =  287 bits (735), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 149/305 (48%), Positives = 209/305 (68%), Gaps = 11/305 (3%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDA--------PRTPDEFERLVRSSPNSSFV 1677
            DEK +   KKK K+ERE E + AE+ L   +A        P + DEF+RLV SS NSS +
Sbjct: 1551 DEKPHPATKKKSKKERELEKQKAEKELSRIEAALMDPGRQPESADEFDRLVLSSANSSIL 1610

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1611 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLGK 1668

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1797
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1669 VFERAVQYNEPLKVFLHLADIYTKSEKFQEAAELYNRMLKRFRQEKAVWIKYGAFLLRRS 1728

Query: 1798 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            Q G    V+QRAL  LP  +H+  I + A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1729 QAGASHRVLQRALECLPAKEHMDVIVKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1788

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1789 VYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1848

Query: 1917 EYVES 1921
            EYVE+
Sbjct: 1849 EYVEA 1853



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 148/627 (23%), Positives = 244/627 (38%), Gaps = 93/627 (14%)

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDY---NTQK 1009
            ++AQ+  R++    +L V Q ++ I+E VK +  V+SL     S+G+A VS       Q 
Sbjct: 220  QKAQEYIRQKNKGANLKVGQYLHCIIEEVKGDGGVVSL-----SVGHAEVSAAIASEEQS 274

Query: 1010 FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQA 1069
            +     L G  V A V  +   +  G  L  LK  +          KK  +Y     V+A
Sbjct: 275  WTLNNLLPGLVVKAQVQKV---TRFGLTLNFLKFFTGLVDFMHLDPKKVGTYFSNQAVRA 331

Query: 1070 EITEIKP----LELRLKFGIGFHGRI-------HITEVNDDKSNVVENLF------SNFK 1112
             I  + P    + L L+      GR        H+  V DD    V+  F       + K
Sbjct: 332  CILCVHPRTKVVRLSLRPIFLQPGRPLTRLSCQHLGAVLDDVP--VQGFFIKAGATFSLK 389

Query: 1113 IGQTVTARIIAKSNKPDMKKSFLWELSIKPS------MLTVSEIGSKLL----------- 1155
             G    AR+   S+  D KK F  E + KP       ++  S +   +L           
Sbjct: 390  NGVLAYARL---SHLSDSKKVFKPE-AFKPGNTHKCRIIDYSPLDELVLLSLRTSIIEAQ 445

Query: 1156 -FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-----QRR 1209
             F   D+  G  + G V  +     LL +   ++  +        PS L +      +++
Sbjct: 446  YFRYHDIKPGAVIKGTVLTIKPYGILLKVGERIRGLV-------PPSHLADILMKNPEKK 498

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
            +HIG+ +   VL  + E K L + L+          +    D        G I+  R+  
Sbjct: 499  YHIGEELKCRVLLCDPEAKKLIMTLKKTLVESKLPPITCYADAQPGLQTHGVII--RVKD 556

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
                  G +V+    + G V   EL    + DP S +  GQ VK  VL    +       
Sbjct: 557  Y-----GCIVKFYNDVQGLVPKHELSAQYIPDPGSVFYTGQVVKVVVLNSEPSKERML-- 609

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLS 1388
             LS +   DG      +         G+  +K   ++   +V   V   T  G  + +L 
Sbjct: 610  -LSFKLLSDGEPKKEHA---------GQGQKKGRGVTVGQLVDVKVLEKTKDGLEVAVLP 659

Query: 1389 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG----RVLSVEPLSKRVEVTLKTS-DSRT 1443
              + A +  S+LSD     P        L AG    RVL +    K + +  K +  S  
Sbjct: 660  HNIPAFLPTSHLSDHVANGP---LLYHWLQAGDILHRVLCLSQSEKHLFLCRKPALVSTV 716

Query: 1444 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1503
                +  N S +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +
Sbjct: 717  EGDQDPKNFSEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSPSDHF 775

Query: 1504 RAGEKVKVKILKVDKEKRRISLGMKSS 1530
              G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 776  VEGQTVVAKVTNVDEEKQRMLLSLRLS 802



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 101/207 (48%), Gaps = 18/207 (8%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +L++++ G  S+ +  L   +  P K LEK E      +  G V  VT +KG  +
Sbjct: 1200 FRVGQALKATVVGPVSSKAF-LCLSLIGPHK-LEKGE------VAMGRVVEVTPNKGLTV 1251

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                    +V + ++SD Y E+P ++F   K+V   VLS E   + + ++L++S +   +
Sbjct: 1252 SFPFGKKGRVSIFHVSDSYSETPLQDFVPQKIVRCYVLSTE--EQMLTLSLRSSRTNPET 1309

Query: 1446 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITI--ENTNLVGLCHVSELSEDHVDN 1498
            +S     EI+++ ++  G ++ G ++ V+  G+  ++    T L    HVS+ S    D 
Sbjct: 1310 KSKVEDPEIDSIQDVKEGQLLRGYVRSVQPNGVLFSLGPSVTGLADYPHVSQYSPSEKDL 1369

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISL 1525
                   G+ +  K+L+++  +  + L
Sbjct: 1370 YNKYLPEGKLLTAKVLRLNHRQDLVEL 1396


>gi|358374933|dbj|GAA91521.1| rRNA biogenesis protein RRP5 [Aspergillus kawachii IFO 4308]
          Length = 1823

 Score =  418 bits (1074), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 360/1328 (27%), Positives = 643/1328 (48%), Gaps = 140/1328 (10%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V +G++V G V+  ++  N V  ++ V+A G + G +P+ H AD        K   + G 
Sbjct: 559  VTVGAVVKGKVEKLLIGANGVDGLIVVLADGIT-GLVPSMHFADTPLQFPEKK--FREGM 615

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
                ++L ++ E   + L+ K SL+NS   +  D   I P +   G +  I   G  V+F
Sbjct: 616  TVSTRILSVNLEKRQIRLTLKKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAVVQF 675

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + GF P S+  +    D S+ + +GQ V  + L V++   ++ +S K         +
Sbjct: 676  YGSIRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDASREKLAVSCKDP------ET 729

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES----NDFGVVVSFEEH 897
            F + +    E I       H G         + G+V E    ++    +D+G+V      
Sbjct: 730  FTEAYRKAFENI-------HPGM-------LVSGTVFEKSADDTLLKLDDYGLVARLNVE 775

Query: 898  SDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
              V G  +      + +  G  + +  ++D+ +A RL+          R     S ++A 
Sbjct: 776  HVVDGSPSKQASTLSKIRVGQKLNELMVIDIQRAHRLI----------RVTGRQSLKKAA 825

Query: 957  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQK 1013
            K        +DL     V   +  +  N + +        IG      V D N  K P  
Sbjct: 826  KHGSIPSKFEDLKEGADVTGFIRNITMNGVFVEF--LGGVIGLVPKRLVGDENVNK-PDY 882

Query: 1014 QFLNGQSVIATVMAL------------PSSST-AGRLLLLLKAISETETSSS------KR 1054
                GQ V ATV ++            PS +T AG           T T  +      + 
Sbjct: 883  DMARGQVVTATVHSVDADFKRFILSMNPSEATHAGAKKKAAAKPEPTPTDDAVANAIDEG 942

Query: 1055 AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFK 1112
             K  S +  G + + ++  ++  ++ ++      GRI ++EV D   ++ +       F+
Sbjct: 943  IKSMSDFTFGRVTKCKVVSVRATQVNVQLADNIQGRIDVSEVFDKWEDIKDRKQPLRFFR 1002

Query: 1113 IGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1163
              Q ++ARI+   +  + K         K  ++ELS+KPS L  +   S L  E+  V +
Sbjct: 1003 PKQVISARILGIHDARNHKFLPISHRTGKFPVFELSVKPSFLQAAN-PSPLNLEQ--VQV 1059

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G    G+V  V ++   + +S +++ +L ++D++ + S L + ++ + +G A+  HV ++
Sbjct: 1060 GSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASDDLSLLADVEKHYPVGSALKVHVSAV 1119

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            + +K  L L  +   D +  + V +           G ++ GR++K+      +++Q+  
Sbjct: 1120 DADKGRLDLSAKQRSDKLVFEDVSV-----------GMVLPGRVTKVTER--QVIMQLSK 1166

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
             + G V   ++ +       + Y + + ++  V+ I +  +    + LSLR S       
Sbjct: 1167 SIVGAVDLIDMADDFSKANPTVYQKNEVLRACVVAIDKANK---KISLSLRPS------- 1216

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
                LS+ +    K +  I+ L  N IV+G+++ V   G F+ + R + A V +S+LSD 
Sbjct: 1217 --KVLSSSLPVQDKEITSIKQLKVNDIVRGFIRRVADNGLFVTVGRDVTAYVRISDLSDS 1274

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
            Y++  +  F   +LV GRV   +    +++++LK S      ++ I  L +L  G IV G
Sbjct: 1275 YLKEWKDSFQADQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPIT-LHDLKPGQIVTG 1333

Query: 1464 QIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            ++++VE +G F+ I+ + N+ GLCH SE++E  V++  T+Y  G+ VK KILK+D+++ +
Sbjct: 1334 KVRKVEEFGAFVVIDGSKNISGLCHRSEMAEGRVEDARTLYEEGDAVKAKILKIDRKQEK 1393

Query: 1523 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN-RSSLLENSSVAVQDMDMESEDGG 1581
            IS G+K+SYF  + D+ +   ++    +++  G  +   S  E S V++  +D+E +   
Sbjct: 1394 ISFGLKASYFDEEEDSDEEEDDDSEGVSLDGFGGVDVDGSDDEESDVSMGGVDLEGDSDE 1453

Query: 1582 SLVLAQIESRASVPPLEVNLDDEQPDMDN-GISQNQGHTDEAKT-IDEKNNRHAKKKEKE 1639
                   +   +  P + +  D          S N    DEA    D  +   ++ K+K+
Sbjct: 1454 ESEEESDDEEMTDAPAKASRKDGGLGAGGFDWSGNNQDDDEAGARSDSDDEEDSRPKKKK 1513

Query: 1640 EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1699
             R+ EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEKAR IAE
Sbjct: 1514 NRKPEIQVDRTGDLDANGPQSVADYERLLLGEPDSSLLWLQYMAFQLELGEVEKAREIAE 1573

Query: 1700 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1759
            RAL+TI I ++ EKLNIWVA  NLEN YGN  ++ +  VF+RA QY D ++V+   + +Y
Sbjct: 1574 RALRTITIGQDAEKLNIWVAMLNLENTYGN--DDTLEDVFKRACQYNDTQEVYERTISIY 1631

Query: 1760 ERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHK 1816
             ++ +N+ AD+L    + KK   S K ++     L       E  +A++ RAL SLP H 
Sbjct: 1632 IQSGKNEKADDLFQTALKKKVFGSPKFFVNYASFLFDTMAAPERARALLPRALQSLPSHT 1691

Query: 1817 HIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874
            H++  S+   LEF+  NG  +RGR++FEG+LS +PK+ DLW+I LD EI+ GD + +R L
Sbjct: 1692 HVELTSKFGQLEFRSANGDIERGRTVFEGLLSSFPKKIDLWNILLDLEIKNGDAEQVRRL 1751

Query: 1875 FERAISL----------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQ 1913
            FER + +                 + PK+ KF FKK+L +E+ +     G ++ +E +K 
Sbjct: 1752 FERVLGIRDTKKGGAAAAVEASKKVRPKQAKFFFKKWLSFEEKLASAEGGNDKMVEEIKA 1811

Query: 1914 KAMEYVES 1921
            KA +YV+S
Sbjct: 1812 KAADYVKS 1819



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 212/875 (24%), Positives = 367/875 (41%), Gaps = 78/875 (8%)

Query: 29  NSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEA----VE 82
           N K   N A +A +L++  DD+ P FPRGGG  LT  ER +I   A  D  FE       
Sbjct: 45  NPKPDANSAPKASELSVLRDDE-PSFPRGGGSVLTPLERKQIQIQATKDVLFEQKGSKPS 103

Query: 83  RGLHKKNKKKKKKTERKANETVDDLGSLFG------------DGISGKLPRYANKITLKN 130
            G    +  +    E   ++T                     D    K  R    +  K 
Sbjct: 104 AGDFGDDGMEDTDMEDAGDDTKSAAAKKSRKKKTKGKKDTEKDATEKKDVRIEG-LNFKR 162

Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE-------------- 176
           +  G  + G V+ +N  D+ + LP  L G      ++  +L+ +IE              
Sbjct: 163 VVPGTMVLGQVSSINAHDIGLSLPNNLTGYVPLT-SVSKVLEEKIEKILKDDGSDEEEDD 221

Query: 177 -ANEDNLLPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQE 232
             ++   L   F++GQ +   V+       D     +++I LS+       GLS   +  
Sbjct: 222 EDDDSLDLHKYFYLGQYLRAYVVSAGSNAADASAKSRKRIELSVDPRQANSGLSKSDLVV 281

Query: 233 GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSIDR 289
              + A V S+EDHG ++  GL      GF+    +  +     +K G +   +V   + 
Sbjct: 282 NSAVQASVVSVEDHGLVMDLGLEGGEVKGFMSSKEVDPKTQPSTIKEGSVFLCMVTGQNA 341

Query: 290 TRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
              V+ LS++  +              +I   +PG      +  +   G+    +     
Sbjct: 342 NGSVIKLSANLQSAGSIKKSHYLSTAPTITSFLPGTAAEILLTDVSSTGMAGKIMGMLDA 401

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYL--LHNRAPPS 403
           TVD+     +    +    Y+   K+  R++   P++    VG +L  ++        P 
Sbjct: 402 TVDLVQSGGSSGKDDLTKKYSTGAKIKGRLVCTFPSAEPYKVGFSLLDHVAKFATEGGPG 461

Query: 404 HV----KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--- 456
                  +  I  ++KVV+V+ GLG+ + I ST      +V +S +A+ +V  +  +   
Sbjct: 462 SSDDAPAISAIVPEAKVVKVEPGLGVYVQIGST--KHLGFVHVSRLADGQVETISPELGP 519

Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF 512
           ++  S    R++G+  ++ L     +    +       DV  G VVKGKV    I  +  
Sbjct: 520 FRVESVHEGRVVGYSAIDNLYLLSFEKKVIDQPFLRVEDVTVGAVVKGKVEKLLIGANGV 579

Query: 513 -GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 569
            G IV    G+  L P  H ++  +  P KKF+ G  +  R+L V  + ++I +T KK+L
Sbjct: 580 DGLIVVLADGITGLVPSMHFADTPLQFPEKKFREGMTVSTRILSVNLEKRQIRLTLKKSL 639

Query: 570 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
           + S+ AI   Y E T    + G I KI+ HG  V+FY  ++GF P SE+      +PS  
Sbjct: 640 LNSESAIWKDYEEITPGTQSPGTIIKIQPHGAVVQFYGSIRGFLPVSEMSEAYIKDPSQH 699

Query: 630 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNA 684
           + +GQVV    + S+ ASR         P   +E      + +  G LVSG V   + + 
Sbjct: 700 FRLGQVVNVHAL-SVDASREKLAVSCKDPETFTEAYRKAFENIHPGMLVSGTVFEKSADD 758

Query: 685 VVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--S 740
            ++ +   G     +  EH+ D    + A+ + S I+ G + ++L+V+D + ++ L+  +
Sbjct: 759 TLLKLDDYGLV-ARLNVEHVVDGSPSKQASTL-SKIRVGQKLNELMVIDIQRAHRLIRVT 816

Query: 741 AKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
            + SL  +A+   +PS    +   + V G++ NI   G FV FLG + G  P+    D  
Sbjct: 817 GRQSLKKAAKHGSIPSKFEDLKEGADVTGFIRNITMNGVFVEFLGGVIGLVPKRLVGDEN 876

Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
                     GQ V + +  V+++  R  LS+  S
Sbjct: 877 VNKPDYDMARGQVVTATVHSVDADFKRFILSMNPS 911



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 178/406 (43%), Gaps = 45/406 (11%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1000 FFRPKQVISARILGIHDARNHKFLPISHRTGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1059

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1060 GSTWVGFVNNVADDCLWINLS-PNVRGRLRLMDASDDLSLLADVEKHYPVGSALKVHVSA 1118

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+   +  K V +D   +S+ +++PG     RV  + E  V++       
Sbjct: 1119 VDADKGRLDLSAKQRS-DKLVFED---VSVGMVLPG-----RVTKVTERQVIMQLSKSIV 1169

Query: 347  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 406
            G VD+  + + F   N    Y +++ + A ++ +D  ++ + L+L P  + + + P   K
Sbjct: 1170 GAVDLIDMADDFSKAN-PTVYQKNEVLRACVVAIDKANKKISLSLRPSKVLSSSLPVQDK 1228

Query: 407  VGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 459
                  Q KV  + RG        GL + +        AYV ISD+++  +++ +  ++ 
Sbjct: 1229 EITSIKQLKVNDIVRGFIRRVADNGLFVTVGR---DVTAYVRISDLSDSYLKEWKDSFQA 1285

Query: 460  GSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
               V+ R+      +G     LK S  +       T  D+KPG +V GKV  V+ FGA V
Sbjct: 1286 DQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPITLHDLKPGQIVTGKVRKVEEFGAFV 1345

Query: 517  QFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
               G   +  LC    M+E  +      ++ G  +  ++L +  K+
Sbjct: 1346 VIDGSKNISGLCHRSEMAEGRVEDARTLYEEGDAVKAKILKIDRKQ 1391



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 156/373 (41%), Gaps = 33/373 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            + L+ +  G    G V  V +  L I L   +RG  R  DA D   D  + A+ +   P 
Sbjct: 1052 LNLEQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASD---DLSLLADVEKHYP- 1107

Query: 186  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
               VG  +   V  +D DK         L L        L  E V  GMVL   V  + +
Sbjct: 1108 ---VGSALKVHVSAVDADKGR-------LDLSAKQRSDKLVFEDVSVGMVLPGRVTKVTE 1157

Query: 246  HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDP 300
               I+     S  G +   ++A++      P +     +L+  V +ID+  K + LS  P
Sbjct: 1158 RQVIMQLS-KSIVGAVDLIDMADDFS-KANPTVYQKNEVLRACVVAIDKANKKISLSLRP 1215

Query: 301  DTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              V  S    +D +  SI  L    +V   ++ + +NG+ ++     T  V I  L +++
Sbjct: 1216 SKVLSSSLPVQDKEITSIKQLKVNDIVRGFIRRVADNGLFVTVGRDVTAYVRISDLSDSY 1275

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQS 414
                WK+ +   + V  R+   D     + ++L   +L  + +AP +   +K G I    
Sbjct: 1276 -LKEWKDSFQADQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPITLHDLKPGQIV-TG 1333

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHL 473
            KV +V+     ++   S  +S   +   S++AE  V      Y+EG  V+ +IL   R  
Sbjct: 1334 KVRKVEEFGAFVVIDGSKNISGLCHR--SEMAEGRVEDARTLYEEGDAVKAKILKIDRKQ 1391

Query: 474  EGLATGILKASAF 486
            E ++ G LKAS F
Sbjct: 1392 EKISFG-LKASYF 1403


>gi|74190944|dbj|BAE28246.1| unnamed protein product [Mus musculus]
          Length = 1414

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 406/1482 (27%), Positives = 683/1482 (46%), Gaps = 172/1482 (11%)

Query: 54   FPRGGGHSLTQRERDEIHA-EVDAEFEA------VERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+      E D  F+       ++R   +K   K KK + +  +++  
Sbjct: 8    FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTAEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 68   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 116  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++  M+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 174  RVNKVLSADALRPDMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 294  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +        AY  +S +++ +  
Sbjct: 349  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKD---GVLAYARVSHLSDSKKA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 406  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 466  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL++++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 526  VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL---------VKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF ++  +R  +  +         V++G LV   V  
Sbjct: 586  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL
Sbjct: 646  KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D 
Sbjct: 705  CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
                 S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   
Sbjct: 765  FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG 
Sbjct: 825  IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VE G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ
Sbjct: 885  EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
                IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+      
Sbjct: 930  ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 986

Query: 1032 STAGRLLLLLKAIS----------ETETSSSK--------------------RAKKKSSY 1061
             T   L+L ++  +          ++ET   K                    ++KK+ S 
Sbjct: 987  VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSL 1044

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
             +G  V   I  +K   + +    GF G IH + + DD   V  +  +  K G+ VTAR+
Sbjct: 1045 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 1103

Query: 1122 IA----KSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSI-----GQRV 1167
            I     K++K  P     F   + ELS++PS L  S        E     I     GQ V
Sbjct: 1104 IGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTV 1163

Query: 1168 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
            T +   Y V  +W  + I   ++ ++ +L ++     L+   ++F +G+A+   V+  + 
Sbjct: 1164 TCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDV 1223

Query: 1226 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             +  L L ++ P++                  + EG++  GR+ K++    GL V     
Sbjct: 1224 PRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFG 1264

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1344
              G+V    L +     PL  +   + V+C +L  +  V     + LSLRSS     + N
Sbjct: 1265 KIGKVSMFHLSDSYSEAPLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKN 1319

Query: 1345 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1404
                   ++ P   +  IED+     ++GYVK V      I L   +      S++S+  
Sbjct: 1320 R------IEDP--EINSIEDVKEGQHLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV 1371

Query: 1405 VESPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
               PEKE      P GKLV  +VL V P+   +E++L  SD+
Sbjct: 1372 --PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411



 Score = 68.6 bits (166), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 138/321 (42%), Gaps = 40/321 (12%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y RV H ++ K    ++    +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARVSHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR S+              +  P     +  D+    +V+G V  +   G  + +
Sbjct: 433  ---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLAIKPFGILVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK +   T+  S
Sbjct: 473  GEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLV-TSKLS 531

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
             I        G    G I RV+ YG  +   N ++ GL    ELS  H+ + ET++  G+
Sbjct: 532  LITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIPDPETVFYTGQ 590

Query: 1508 KVKVKILKVDKEKRRISLGMK 1528
             VKV +L  +  K R+ L  +
Sbjct: 591  VVKVAVLSCEPSKERMLLSFR 611


>gi|294659326|ref|XP_461694.2| DEHA2G03410p [Debaryomyces hansenii CBS767]
 gi|199433877|emb|CAG90142.2| DEHA2G03410p [Debaryomyces hansenii CBS767]
          Length = 1716

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 401/1515 (26%), Positives = 700/1515 (46%), Gaps = 209/1515 (13%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            ++PG++V   V  +   G + +  G V A   LP++++F++     K+ +G  +  RV G
Sbjct: 317  IEPGILVDALVSDITKNGIVTKVFGLVDATINLPNLNDFDLQTLKHKYTIGNNIKARVTG 376

Query: 556  V----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG-----CFVRF- 605
            +     +KR+ ++    ++    +  S  + A D         ++E  G      FV F 
Sbjct: 377  ILLKSGTKRLMLSQLPHIISFSSS-PSDDSSALDAFPIGHIFEEVEVKGSDPNYVFVGFG 435

Query: 606  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINLSFMMKPTRVSE 663
             + + G    S++  DP       Y VG   K R++  +SI     + +   +  ++   
Sbjct: 436  SSTLHGQVHNSKI--DPSKNLEIDYSVGSKHKARVIGYNSIENLLVLTMEPKVIDSKFLT 493

Query: 664  DDLVKLGSLVSG--VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
             D + +G  V+G  +V V+  +  ++  I  G+ +  +P  H++D          ++ P 
Sbjct: 494  TDDIPVGEFVNGAEIVKVLPDSGGIIVKILNGF-EALVPGNHMSD--------VRLVYPE 544

Query: 722  YEFD-----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY-------- 768
             +F      +  VL  +   L  + K SL+N           I  + ++ G+        
Sbjct: 545  RKFKVGGKVKGRVLRKQGRKLFFTLKKSLVN-----------IEDDEILTGFDKATVGFK 593

Query: 769  ----VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
                V   +  G  V F G L  + P+++  +      S    +GQ+V   IL+VN +  
Sbjct: 594  SPATVEKFVHNGAIVSFFGNLRAYLPKNEISETFVNQASDHLKIGQTVNVKILNVNKDDQ 653

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
            R+ ++L+QS                   I +  S K   S+L   +      V+E KV E
Sbjct: 654  RLMVTLRQS-------------------IDLSDSQKATISDLYPGKSITTAIVVE-KVKE 693

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLV 934
            S    V+V  E +S++ G I    L+    E           G  I   +L+     R V
Sbjct: 694  S----VIVELE-NSNLRGVIFSGHLSDGNYEQNRSIFKKLPIGDKIDVLVLEKDLKSRSV 748

Query: 935  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEY 993
             +S K   I          +A K+       KD+ V ++ ++  ++ V    L +S    
Sbjct: 749  TVSAKASLI----------EAAKQDEVPAYFKDIKVDNKMLHGYIKSVTNMGLFISFAGK 798

Query: 994  NHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 1053
               +  A  +     +   K+F   QSV   V+ +   +   R LL LK    ++ SS+ 
Sbjct: 799  LTGLVLAKYATDKPDEDLSKKFYKYQSVSCRVIRIDEENK--RFLLSLKKSENSKDSSNT 856

Query: 1054 RA------KKKSS---YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND------ 1098
                     +KS+   Y  G +  A +  IK  +L ++      GR+ IT+  +      
Sbjct: 857  EEVINPIDSEKSTVGDYTPGVITSAVVKSIKGTQLNVQLADNLQGRVDITQCFNSWSEIK 916

Query: 1099 DKSNVVENLFSNFKIGQTVTARIIAKSNK------PDMKKSFLWELSIKPSMLTVSEIGS 1152
            DK   +     N KI   V     AK+++          K+ + ELSI    L   +   
Sbjct: 917  DKKQPLSQFHKNDKIKVKVIGFHDAKTHRFLPITHRKSNKNIVLELSILEKELKTPDEPY 976

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
             +L    + S G +   Y+  V   +  ++I+  +K ++  ++ + + S   + + +  I
Sbjct: 977  HML-NLSNTSEGSKWVAYINNVAKGFVWVSITPTIKGRISFMELSDDVSVFDDIENKLPI 1035

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKI 1270
            G A+   V  I+ +   + L  R              N  M T   +  GD +  R+ K+
Sbjct: 1036 GMAIEATVKDIDNDHNTVVLSAR--------------NSTMGTVKDVKVGDKLPARVLKV 1081

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                  ++V++G +L      T+  N       + +    F    VL +    +    + 
Sbjct: 1082 RDTF--VLVELGKNLVASSFITDALNDYTEKLENVFHTNDFCTATVLAVDEESK---KIA 1136

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            +SLR+                 D   K ++ IEDL+   I++G+VKNV + G +I L R 
Sbjct: 1137 VSLRND----------------DATDKVIDSIEDLNRGDIIRGFVKNVANNGVYIALGRS 1180

Query: 1391 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
            + A V +++LSD +++  +K F   + + G++ S +    R+ +TLK S+       E+N
Sbjct: 1181 IHALVRITDLSDSFLKDWKKYFKPHQPIIGKISSCKE-EGRILMTLKESEI----NGELN 1235

Query: 1451 NL---SNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAG 1506
             L    +L VG+I  G ++RV  +G FI ++ T N+ GLCH S++S++ V+N+ +++  G
Sbjct: 1236 VLKKFEDLEVGEIFEGSVRRVTDFGAFIKLDGTVNISGLCHHSQISDNDVENVSSLFGEG 1295

Query: 1507 EKVKVKILKVDKEKRRISLGMKSSYFKN-----DADNLQMSS-------------EEESD 1548
            ++VKVKIL +D+EK+++SLGMK+SYF N     + D+++MS              E E+D
Sbjct: 1296 DRVKVKILAIDQEKKQLSLGMKASYFTNADASSEQDDVEMSDANDQNDSGSESDDEHEND 1355

Query: 1549 EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRAS-VPPLEVNLDDEQPD 1607
            E+ +EV       +LEN + A ++ + +SED          SR+S V  L  N  D    
Sbjct: 1356 ESDDEV----MEDVLENKNGASEN-ESDSEDDEE----NDNSRSSGVSGLSTNGFDWTAS 1406

Query: 1608 MDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERL 1667
            + +    N   +DE     EK  +    K  E++  ++           AP++  +FERL
Sbjct: 1407 ILDQAEDNYSSSDEEDFTHEKKKKKKTSKVIEDKTADLNTR--------APQSVSDFERL 1458

Query: 1668 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1727
            +  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE EK+NIW+A  NLEN +
Sbjct: 1459 LVGNPNSSIMWMNYMSFQLQLSEVDKAREIGERALKTINYREEQEKMNIWIALLNLENTF 1518

Query: 1728 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1787
            G   ++ + + F+R+ QY D   +H  L+ +Y  +E+ + ADEL   M KKF  +  +W+
Sbjct: 1519 GT--DDTLEETFKRSCQYMDSLIMHQKLVSIYTMSEKFRKADELYKVMCKKFGKNVSIWV 1576

Query: 1788 RRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1846
            +    LL +Q  +    V+ R+L  LP+ +HI+ + +   LEF  G  ++GRS+FEG++S
Sbjct: 1577 QYGSSLLDRQLNDEAHEVLARSLQVLPKREHIEVVRKFGQLEFTKGDPEQGRSLFEGLIS 1636

Query: 1847 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906
            + PKR DLW++Y+DQEI+  +   +  LFERAI+  L  K+ KF F K+L +E+   +++
Sbjct: 1637 DVPKRIDLWNVYIDQEIKQDNKAKVEDLFERAITKKLSRKQAKFFFSKWLSFEEEKNDQQ 1696

Query: 1907 RIEYVKQKAMEYVES 1921
                VK KA EYV+S
Sbjct: 1697 FAARVKAKAAEYVQS 1711



 Score =  201 bits (511), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 184/692 (26%), Positives = 337/692 (48%), Gaps = 42/692 (6%)

Query: 182 LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
           +L  IF +GQ +   V++   D K   K++I LS+   ++   L  E +  G +L   +K
Sbjct: 181 VLKEIFKIGQWLRAKVVKPSSDSK---KKRIQLSIEPEVVNATLEDEDLTPGNLLQCSIK 237

Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGI---DVKPGLLLQGVVRSIDRTRKVVYLSS 298
           SIEDHG IL+ G  +F+GF+    L  +  I   D+  G +L   + S   +R +     
Sbjct: 238 SIEDHGVILNVGRSNFSGFISNKELKNSKDIEAEDLNVGDVLLTSIVSKPSSRTITLRPV 297

Query: 299 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
             ++ SK  +      S+D + PG++V   V  I +NG++         T+++ +L N F
Sbjct: 298 QSNSTSKKASVSTIS-SVDSIEPGILVDALVSDITKNGIVTKVFGLVDATINLPNL-NDF 355

Query: 359 PTTNWKNDYNQHKKVNARI--LFVDPTSRAVGLTLNPYLLHNRAPPSHVK-------VGD 409
                K+ Y     + AR+  + +   ++ + L+  P+++   + PS          +G 
Sbjct: 356 DLQTLKHKYTIGNNIKARVTGILLKSGTKRLMLSQLPHIISFSSSPSDDSSALDAFPIGH 415

Query: 410 IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           I+++ +V   D    + +   S+ +    + +  D +    + LE  Y  GS  + R++G
Sbjct: 416 IFEEVEVKGSDPNY-VFVGFGSSTLHGQVHNSKIDPS----KNLEIDYSVGSKHKARVIG 470

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALC 526
           +  +E L    ++    +    T  D+  G  V G +++ V  DS G IV+   G +AL 
Sbjct: 471 YNSIENLLVLTMEPKVIDSKFLTTDDIPVGEFVNGAEIVKVLPDSGGIIVKILNGFEALV 530

Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATD 585
           P  HMS+  +V P +KFKVG ++  RVL  + +++  T KK+LV      IL+ + +AT 
Sbjct: 531 PGNHMSDVRLVYPERKFKVGGKVKGRVLRKQGRKLFFTLKKSLVNIEDDEILTGFDKATV 590

Query: 586 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
              +   + K   +G  V F+  ++ + P++E+      + S    +GQ V  +I++   
Sbjct: 591 GFKSPATVEKFVHNGAIVSFFGNLRAYLPKNEISETFVNQASDHLKIGQTVNVKILNVNK 650

Query: 646 ASRRINLSF-----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
             +R+ ++      +    + +  DL    S+ + +V      +V+V  +     +G I 
Sbjct: 651 DDQRLMVTLRQSIDLSDSQKATISDLYPGKSITTAIVVEKVKESVIVE-LENSNLRGVIF 709

Query: 701 TEHLAD--HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQQ--LPS 754
           + HL+D  + ++ ++ K  +  G + D +LVL  D +S ++ +SAK SLI +A+Q  +P+
Sbjct: 710 SGHLSDGNYEQNRSIFKK-LPIGDKID-VLVLEKDLKSRSVTVSAKASLIEAAKQDEVPA 767

Query: 755 DASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
               I   N ++HGY+ ++   G F+ F G+LTG      A D    DLSK +Y  QSV 
Sbjct: 768 YFKDIKVDNKMLHGYIKSVTNMGLFISFAGKLTGLVLAKYATDKPDEDLSKKFYKYQSVS 827

Query: 814 SNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
             ++ ++ E  R  LSLK+S  +S D+S  +E
Sbjct: 828 CRVIRIDEENKRFLLSLKKS-ENSKDSSNTEE 858


>gi|363735321|ref|XP_421739.3| PREDICTED: protein RRP5 homolog [Gallus gallus]
          Length = 1793

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 382/1408 (27%), Positives = 646/1408 (45%), Gaps = 145/1408 (10%)

Query: 114  GISGKL--PRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALD 168
            G +GK   P++        +  GM   G + EV   +LVI LP GL G   +   +DA  
Sbjct: 19   GTTGKKAKPKFEQDNLFDELCEGMLFLGCIKEVTVFELVISLPNGLTGFVPVTHISDAYS 78

Query: 169  PILDNEI---EANED-NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG 224
             +L  ++   E  ED N L  ++  G LV C+V  ++  K   G+R I LS+    + KG
Sbjct: 79   ELLSKQVTQGELLEDLNSLSDLYSPGMLVRCVVTSVE--KSADGRRSIKLSINPKSVNKG 136

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLL 279
            LS   +  GM+L+ +V S+EDHGY++  G+     FLP         A   G D+K G  
Sbjct: 137  LSASALTSGMLLSGFVSSVEDHGYLIDIGVSGTHAFLPHQKAQNYIKAVKRGSDLKIGQS 196

Query: 280  LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
            L  V+  +    +VV LS+D   V+  +  + +  ++  L+PG++V  +VQ +   GV L
Sbjct: 197  LNCVIEEVKNEGRVVRLSADRSEVAASIATEQQNWTLSNLLPGLVVKAQVQKVAPLGVSL 256

Query: 340  SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
            +FL+ FTG VD  H+     T     +Y+ ++ V A IL   PTS+ V LTL    LH  
Sbjct: 257  TFLSSFTGIVDFMHVDPEKST-----NYSPNQMVKACILSTHPTSKVVRLTLRQAFLHPG 311

Query: 400  APPSHV---KVGDIYDQSKVVRVDRGLGLL--LDIPSTPVSTPAYVTISDVAEEEVRKLE 454
              P+ +   ++G + ++S V    +  G +  LD      + P +++       + RK  
Sbjct: 312  GSPNQLSNDRIGAVVEESTVKAFYKQFGAVFQLDDGMLAFARPKHLS-------KTRKSF 364

Query: 455  K--KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
            K   +K G   + RI+ +  ++ +    LK    E     + D+  G V++GKV+++   
Sbjct: 365  KPAAFKAGCKHKCRIIDYSLMDEMCIVSLKHQIIEARFLRYEDIHTGDVMQGKVLSLKPI 424

Query: 513  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLV 570
            G  V+   G+K L P  H+++  + +P KK+ VG E+  RVL      K++ +T KKTLV
Sbjct: 425  GMQVKVTDGIKGLVPSMHLADVILKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLKKTLV 484

Query: 571  KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
            +SKL +LSSY +A   LITHG++    + GC V+FYN V+G  P++EL  +P   P  ++
Sbjct: 485  QSKLPVLSSYEDAEPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVF 544

Query: 631  HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-----------VKLGSLVSGVVDV 679
            H GQVVK  ++   P   R+ LSF +    V E               ++G +V   V  
Sbjct: 545  HDGQVVKVMVLKCEPQQERLLLSFRLSSRTVPEGRSECIPKKKQQVKYQIGEMVDVEVLK 604

Query: 680  VTPNAVVVYVIAKGYSK-GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
               N + V ++  G +    +PT HL+D + ++ ++   ++ G    +++ L ++   ++
Sbjct: 605  KNENGLEVSILEDGGNVIAWLPTVHLSDFVANSKLLWHCLQEGDVLPRVMCLSDKGDRII 664

Query: 739  LSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            L  K ++I++ Q  Q+    S I P  ++ GYV  ++  G FV F   +TG AP+    D
Sbjct: 665  LCRKSAVISAVQEEQVVRSFSEIQPGVLLIGYVRKVMPFGVFVEFPFGVTGLAPKVSMSD 724

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA-----SFMQEHFLLEE 851
                D    + VGQ+V + ++ ++ E  R+ LSLK S CSS D+     S + ++F   E
Sbjct: 725  KFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLSLKVSECSSGDSAAESFSLLNQYFKEVE 784

Query: 852  KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQ 908
            +I  L   +      + V   + G  ++  V +  + G   +      V G     T + 
Sbjct: 785  EIRNLLRRREESGLARCVCELVPGKELQLVVQDVMEDG--SALFSGGCVRGLTVTATRYH 842

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L G  V  G   +  +L V      V +SL+   +                 K+ A + L
Sbjct: 843  LGGKNVIPGEKAKGLVLHVDAITSKVYVSLREELL-----------------KKRAKQRL 885

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMA 1027
              +    AIV+ + E + ++SL +          S +N T +F  ++   GQ + AT + 
Sbjct: 886  TKNSQHPAIVQHIAEEFAIVSLLDSGRLAAIPIASHFNDTFRFDSEKLKVGQRIYAT-LK 944

Query: 1028 LPSSSTAGRLLLLL-----------KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
            +  ++  G LL +            +  SET    +  A  K S  +G +V   +  +KP
Sbjct: 945  MVKANDLGVLLAVQDPAKKNAFVRDRKESETALEETLAAAVKHSLSLGDIVTGTVKSVKP 1004

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTVTARIIAKSN-------- 1126
              + +       G IH + + D+   V  + F  +  K GQ VTAR+I   +        
Sbjct: 1005 THVTVAIDDKLTGSIHASRILDE---VPIHSFPTYTLKAGQKVTARVIGGRDVNTHRYLP 1061

Query: 1127 --KPDMKKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDN--EWAL 1180
               P   +S + ELSI+PS +   V  +      +    + GQ VT +V K +    W  
Sbjct: 1062 ITHPHFTRS-VPELSIRPSEIEGEVETMRDDTREKLGPYNTGQTVTCFVRKYNTLKNWLE 1120

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
            + ++  ++ ++  L  +     L+  ++ F  G+A++  V   +  +  L L L   Q  
Sbjct: 1121 VEVTPDVRGRVPRLLLSLNTKVLKHPEKNFKNGQALSATVTGTDATETNLFLSLTGIQS- 1179

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
                            +  G I  G ++K++  + GL + +     G+V    L +    
Sbjct: 1180 ----------------LEPGTITVGMVAKMIPHI-GLTITLPGGKAGKVSIFHLSDKYTE 1222

Query: 1301 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1360
             PLS +  G+ V+C +L           ++LSLR S   ++  NS  +  DV+     + 
Sbjct: 1223 SPLSDFKIGKVVRCYILS-----NENGKIQLSLRQS--RLNPRNSRKVE-DVE-----IT 1269

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKL 1417
             I+D+    +V+GYVK+VT  G F  LS  L  ++L  N+S  +V+     EK  P GKL
Sbjct: 1270 CIKDVKKGQLVRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKL 1329

Query: 1418 VAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
            +  +VL V      VE++L   D+   S
Sbjct: 1330 LTAKVLDVNKKENHVELSLLPEDTEMPS 1357



 Score =  276 bits (707), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 134/265 (50%), Positives = 185/265 (69%), Gaps = 3/265 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P++ D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI  REE EKLN+W
Sbjct: 1524 PQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQEKLNVW 1583

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            VA  NLEN YG   EE ++KVF+RA+QY +P KV   L  +Y  +E+ K A+EL + M++
Sbjct: 1584 VALLNLENMYGT--EETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLR 1641

Query: 1778 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
            +F+    VWL+    LLKQ Q E    +++RAL +LP  +H+  IS+ A LEF+ G  + 
Sbjct: 1642 RFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFRFGDPEH 1701

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
             +++FE  L+ YPKRTD+WSIY+D  I+ G    IR +FER I L+L PKKMKF FK+YL
Sbjct: 1702 AKALFESTLNSYPKRTDIWSIYMDIMIKQGSQKEIRDIFERVIHLNLAPKKMKFFFKRYL 1761

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVES 1921
            +YEK  G  E +  VK  A+EYVE+
Sbjct: 1762 DYEKKYGTTETVMAVKTAALEYVEA 1786



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 8/173 (4%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
            + ED+    ++QG V ++   G  + ++  +   V   +L+D  ++ PEK++ +G  V  
Sbjct: 404  RYEDIHTGDVMQGKVLSLKPIGMQVKVTDGIKGLVPSMHLADVILKQPEKKYNVGDEVRC 463

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITI 1477
            RVL   P  K++ +TLK    +T  QS++  LS   +   G I  G +     +G  +  
Sbjct: 464  RVLECNPAEKKLFLTLK----KTLVQSKLPVLSSYEDAEPGLITHGFVVCAREFGCIVKF 519

Query: 1478 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             N ++ GL   +ELS + +   + ++  G+ VKV +LK + ++ R+ L  + S
Sbjct: 520  YN-DVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCEPQQERLLLSFRLS 571



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 153/342 (44%), Gaps = 42/342 (12%)

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEG 1260
            L++ ++++++G  V   VL  N  +K L L L+  +  +  K   +S+  D     I  G
Sbjct: 448  LKQPEKKYNVGDEVRCRVLECNPAEKKLFLTLK--KTLVQSKLPVLSSYEDAEPGLITHG 505

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
             +V  R         G +V+    + G V   EL +  +S P   + +GQ VK  VL+  
Sbjct: 506  FVVCAR-------EFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFHDGQVVKVMVLKCE 558

Query: 1321 -RTVRGTFHVELSLRSSLDGMSSTNSS-------DLSTDVDTPGKHLEKIED-LSPNMIV 1371
             +  R      LS R+  +G S             +   VD   + L+K E+ L  +++ 
Sbjct: 559  PQQERLLLSFRLSSRTVPEGRSECIPKKKQQVKYQIGEMVDV--EVLKKNENGLEVSILE 616

Query: 1372 QGYVKNVTSKGCFIMLSRKL-DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
             G   NV +    + LS  + ++K+L   L +G V       P       RV+ +     
Sbjct: 617  DG--GNVIAWLPTVHLSDFVANSKLLWHCLQEGDV------LP-------RVMCLSDKGD 661

Query: 1431 RVEVTLKTSDSRTASQSE--INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
            R+ +  + S   +A Q E  + + S +  G ++IG +++V  +G+F+      + GL   
Sbjct: 662  RI-ILCRKSAVISAVQEEQVVRSFSEIQPGVLLIGYVRKVMPFGVFVEFP-FGVTGLAPK 719

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
              +S+  V + +  +  G+ V  K++ +D+EK+R+ L +K S
Sbjct: 720  VSMSDKFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLSLKVS 761


>gi|320582873|gb|EFW97090.1| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Ogataea parapolymorpha DL-1]
          Length = 1659

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 400/1492 (26%), Positives = 689/1492 (46%), Gaps = 201/1492 (13%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--- 554
            PGM V+  V  V   G I +  G   A  PL H+  +E  +    F VG++L  RV+   
Sbjct: 295  PGMGVEALVTEVTKEGVICKLFGVGNASIPLSHLGVYEYSELKHNFAVGSKLKSRVMVSH 354

Query: 555  -GVKSKRITVT---HKKTL---VKSKLAILSSYAEATDRLITHGW--ITKIEKHGCFVRF 605
                 KR  ++   H K+L   V  + + L ++       I H +  +T   K   ++  
Sbjct: 355  VRAGDKRFLLSVLPHIKSLNANVFGETSALEAFP------IGHIFDSVTIKGKDSSYIYV 408

Query: 606  YNGVQGFAPRSELGLDPGCEPSSM-YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
              G      ++ +      +   M + +G   + R++     S   NL  +    +  E 
Sbjct: 409  DVGSDFAIGQAHITRVSSTKDLDMDFKIGSTHRARVLG---YSATDNLYILTLDKQQIER 465

Query: 665  DLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMK 715
              +++     G L++  V  V     +V    + + +G +P  +++D    + E    + 
Sbjct: 466  KFLRVEDIPAGELINCEVRSVDAEKGIVVKFEEDF-EGIVPPAYMSDVKLIYPERKFKIG 524

Query: 716  SVIKPGYEFDQLLVLDNES--SNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNI 772
            S IK      ++L + N+S  S + ++ K SL+N   + + S    +         +  +
Sbjct: 525  SKIK-----GRVLRVVNQSGKSRIYVTLKKSLVNIENEDVVSSIEDVEAGKKTFATIDKM 579

Query: 773  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            + TGC VRF G +  F P S+  +           +GQ+V+  ++ V+ E  RI    K 
Sbjct: 580  LPTGCVVRFFGFVKAFLPNSEISETFVKRPEDHVKLGQTVKVRVVSVDKENNRI----KV 635

Query: 833  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVV 891
            SC  S   S MQ+                     K +   + G S+++ +V E      +
Sbjct: 636  SCRVSEVLSDMQK---------------------KTLSSIVPGRSIVDVQVVEKEKDSAI 674

Query: 892  VSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTV 941
            V   E S + G I    L     E           G+ ++  +L+     R+V LS K  
Sbjct: 675  VELTE-SGLRGIIYAGHLGEGNYEQSRAQLKKLQIGAELKTLVLEKDVRSRVVKLSAKQS 733

Query: 942  FIDRFREANSNRQAQKKK-----RKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
             I         + AQ+ K     R  E S +L     ++  V+ V  N + +S   + + 
Sbjct: 734  LI---------KDAQQGKLPLQYRDIEVSDEL-----LHGFVKSVTPNGVFVS---FGNG 776

Query: 997  IGYASVSDYNTQKFP----QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET----- 1047
            +   ++  +  +K P    QK F   QSV   V+ +  ++   R L+ +K  S T     
Sbjct: 777  LTGLALPRHAVEK-PVDDLQKAFFTNQSVTCHVIRVDDANK--RFLVSMKKESSTTSEPA 833

Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VE 1105
            E     + K    + VG   +A++  IK  +L ++      GRI ++E+ DD S +  V+
Sbjct: 834  ENPVDSKMKTLDDFTVGKNTKAKVKSIKQTQLNVQLADNLQGRIDVSELFDDVSEIKDVK 893

Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK---LLFEE---- 1158
               S F+ G+ +  +II      D +      +S K +  TV E+ +K   +L  +    
Sbjct: 894  RPLSQFQAGEVLDVKIIGFH---DSRNHRFLPISHKRTNQTVLELSAKKSSILSHKPVVP 950

Query: 1159 ---CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
                D  +G   TGY+      +  +TIS +L+A++ ++D + + S+ +  ++ + +G  
Sbjct: 951  ASIGDFHLGDECTGYINNFARGFLWVTISPNLRARISLMDLSDDASKFENLEKEYPVGSV 1010

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            V   V  ++ E  +L L  R        K +    D     +  G ++  R+ K      
Sbjct: 1011 VRAKVTDLDTEHNILSLSARS-------KAITSLED-----LEVGSVIPARVLKTRESY- 1057

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
             +VV++G  + G    T+  N         +         VLE+  + +  +   +SLR+
Sbjct: 1058 -VVVELGKQVSGISFITDALNDYTDKLDDIFSTNDICAATVLEVDHSNKKVY---VSLRT 1113

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
                             D   K +   EDLSP  +V+G+VKNV + G ++ L R + A V
Sbjct: 1114 K----------------DVKDKRIASYEDLSPGTVVRGFVKNVANNGVYVALGRTVHALV 1157

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1455
             +S+LSD Y++  ++ F + + V G++   E    ++ +TLK S+  + S S +     +
Sbjct: 1158 RVSDLSDSYLKDWKQYFKVHQPVLGKITKSEG-ENQILMTLKQSEIDSDS-SLLKRFDQI 1215

Query: 1456 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
               +I  G ++RV ++G+F+ ++ T N+ GLCH S+++++ V NIE+++  G++VKVKIL
Sbjct: 1216 QKDEIYEGSVRRVTNFGVFVNLDGTLNVSGLCHHSQIADNQVTNIESLFSEGDRVKVKIL 1275

Query: 1515 KVDKEKRRISLGMKSSYFKNDADNLQMSSEEE---SDEAIEEVGSYNRSSLLENSSVAVQ 1571
             VD EK+++SLGMK+SYF  + +   +  EE+   SD++I +    N S     S  +  
Sbjct: 1276 DVDHEKKQLSLGMKASYFTGETEEPAVEEEEDEVMSDDSIIDTAFGNESEKDAESDYS-D 1334

Query: 1572 DMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNR 1631
            D D  +  G S       S       +V+ DDE   MD    + +    E +T D     
Sbjct: 1335 DSDAPATGGLSAGFDWTASILDQAKEDVSEDDE---MDKPKRKKRKVVAEDQTAD----- 1386

Query: 1632 HAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADV 1691
                                 L    P++  +FERL+  +P+SS +W+ YM+F + ++++
Sbjct: 1387 ---------------------LNSRVPQSVSDFERLIVGNPDSSILWMNYMSFQIQLSEI 1425

Query: 1692 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1751
            +KAR I ERAL+TIN REE EKLNIW+A  NLEN +G   EE++   F+R+ QY DP  +
Sbjct: 1426 DKAREIGERALKTINYREEQEKLNIWIALLNLENMFGT--EESLEATFKRSCQYMDPYVM 1483

Query: 1752 HLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEGVQA--VVQRA 1808
            +  L  +Y  +E+    D+L   M KKF      VW+     LL QQQ+G +A  V+ +A
Sbjct: 1484 YQKLAAIYIASEKVDKVDQLYTAMCKKFGSQHTSVWVAYGSFLL-QQQDGERAREVLAKA 1542

Query: 1809 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1868
            L  L +  H++ + + A LEF  G  + GRS+FEG+LS+ PKR DLW++Y+DQEI+ GD 
Sbjct: 1543 LQVLSKRDHVEVVKKFAQLEFSKGDPEHGRSLFEGLLSDVPKRIDLWNVYIDQEIKFGDK 1602

Query: 1869 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
              +  +FER ++  L  K+ KF F K+LE+E+   +++  +YVK KA+EY +
Sbjct: 1603 KKVEAIFERVVTRKLTRKQAKFFFGKWLEFEEKHEDQKACDYVKAKAVEYAQ 1654



 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 219/847 (25%), Positives = 376/847 (44%), Gaps = 103/847 (12%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG  LT  E  E+  E  ++  A  +      K KK+K      E +         
Sbjct: 31  FPRGGGSVLTPLEIKEVANEAVSDALAEAKESKSSKKSKKQKVIEAPTEQI--------- 81

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI--- 170
           G+          +T K +  G  + G + +VN  ++V+ L   L G     +  DP+   
Sbjct: 82  GV--------EHVTFKTLLPGSMVLGQIKQVNRMEIVLSLTDNLMGFIPITNISDPLTSQ 133

Query: 171 -----------------------LDNEIEANEDNLLP---TIFHVGQLVSCIVLQLDDDK 204
                                  L N I +++    P   T F VGQ +  IV++    K
Sbjct: 134 LQEFDDEQEESDEEPAYGDEENTLTNGIISSKKKSFPQLVTRFQVGQWLRAIVMESTKSK 193

Query: 205 KEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRN 264
           K    ++I LS+  S + + +  E +    ++ A VKS+EDHG +L  G     GF+ + 
Sbjct: 194 K----KRIELSIEPSKVNEPMETEDLVTNAIVQASVKSVEDHGLVLDVGKEKLGGFIAKK 249

Query: 265 NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMM 324
           ++   S +D+   +LL  + +   RT     + S  + +S   T      SID ++PGM 
Sbjct: 250 DV--QSLVDI-GSVLLVNIAKKDGRT----LICSPINKLSAVQTIS----SIDAILPGMG 298

Query: 325 VSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDP 382
           V   V  + + GV+         ++ + HL   +  +  K+++    K+ +R++   V  
Sbjct: 299 VEALVTEVTKEGVICKLFGVGNASIPLSHL-GVYEYSELKHNFAVGSKLKSRVMVSHVRA 357

Query: 383 TSRAVGLTLNPYL-------LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
             +   L++ P++           +      +G I+D   +   D    + +D+ S    
Sbjct: 358 GDKRFLLSVLPHIKSLNANVFGETSALEAFPIGHIFDSVTIKGKDSSY-IYVDVGSDFAI 416

Query: 436 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 495
             A++T         + L+  +K GS  R R+LG+   + L    L     E       D
Sbjct: 417 GQAHIT----RVSSTKDLDMDFKIGSTHRARVLGYSATDNLYILTLDKQQIERKFLRVED 472

Query: 496 VKPGMVVKGKVIAVDS-FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +  G ++  +V +VD+  G +V+F    + + P  +MS+ +++ P +KFK+G+++  RVL
Sbjct: 473 IPAGELINCEVRSVDAEKGIVVKFEEDFEGIVPPAYMSDVKLIYPERKFKIGSKIKGRVL 532

Query: 555 GVKSK----RITVTHKKTLVK-SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            V ++    RI VT KK+LV      ++SS  +      T   I K+   GC VRF+  V
Sbjct: 533 RVVNQSGKSRIYVTLKKSLVNIENEDVVSSIEDVEAGKKTFATIDKMLPTGCVVRFFGFV 592

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLV 667
           + F P SE+       P     +GQ VK R++S    + RI +S      RVSE   D+ 
Sbjct: 593 KAFLPNSEISETFVKRPEDHVKLGQTVKVRVVSVDKENNRIKVS-----CRVSEVLSDMQ 647

Query: 668 K--LGSLVSG--VVDVVT----PNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 718
           K  L S+V G  +VDV       ++ +V +   G  +G I   HL + + E +      +
Sbjct: 648 KKTLSSIVPGRSIVDVQVVEKEKDSAIVELTESGL-RGIIYAGHLGEGNYEQSRAQLKKL 706

Query: 719 KPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQ--LPSDASHIH-PNSVVHGYVCNIIE 774
           + G E   L++  +  S ++ LSAK SLI  AQQ  LP     I   + ++HG+V ++  
Sbjct: 707 QIGAELKTLVLEKDVRSRVVKLSAKQSLIKDAQQGKLPLQYRDIEVSDELLHGFVKSVTP 766

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            G FV F   LTG A    AV+    DL K ++  QSV  +++ V+    R  +S+K+  
Sbjct: 767 NGVFVSFGNGLTGLALPRHAVEKPVDDLQKAFFTNQSVTCHVIRVDDANKRFLVSMKKES 826

Query: 835 CSSTDAS 841
            ++++ +
Sbjct: 827 STTSEPA 833



 Score = 45.1 bits (105), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
            +    V  +D + K VY+S     V     KD +  S + L PG +V   V+++  NGV 
Sbjct: 1092 ICAATVLEVDHSNKKVYVSLRTKDV-----KDKRIASYEDLSPGTVVRGFVKNVANNGVY 1146

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 398
            ++        V +  L +++   +WK  +  H+ V  +I   +  ++ + +TL    + +
Sbjct: 1147 VALGRTVHALVRVSDLSDSY-LKDWKQYFKVHQPVLGKITKSEGENQIL-MTLKQSEIDS 1204

Query: 399  RAPP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 454
             +        ++  +IY+ S  VR     G+ +++  T ++       S +A+ +V  +E
Sbjct: 1205 DSSLLKRFDQIQKDEIYEGS--VRRVTNFGVFVNLDGT-LNVSGLCHHSQIADNQVTNIE 1261

Query: 455  KKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
              + EG  V+V+IL   H +   +  +KAS F G
Sbjct: 1262 SLFSEGDRVKVKILDVDHEKKQLSLGMKASYFTG 1295



 Score = 40.8 bits (94), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 3/155 (1%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            + ++ D+ PG VV+G V  V + G  V     V AL  +  +S+  +    + FKV   +
Sbjct: 1121 IASYEDLSPGTVVRGFVKNVANNGVYVALGRTVHALVRVSDLSDSYLKDWKQYFKVHQPV 1180

Query: 550  VFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 607
            + ++   + + +I +T K++ + S  ++L  + +     I  G + ++   G FV     
Sbjct: 1181 LGKITKSEGENQILMTLKQSEIDSDSSLLKRFDQIQKDEIYEGSVRRVTNFGVFVNLDGT 1240

Query: 608  -GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
              V G    S++  +      S++  G  VK +I+
Sbjct: 1241 LNVSGLCHHSQIADNQVTNIESLFSEGDRVKVKIL 1275


>gi|156845672|ref|XP_001645726.1| hypothetical protein Kpol_1043p58 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156116393|gb|EDO17868.1| hypothetical protein Kpol_1043p58 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1725

 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 360/1195 (30%), Positives = 582/1195 (48%), Gaps = 151/1195 (12%)

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            GC V F G ++GF P ++  +       +   +GQ++   +L V  E  RI ++    C 
Sbjct: 625  GCVVSFFGGISGFLPNTEISEAFVKRPEEHLRLGQTILVKLLQVEKERSRIIVT----CK 680

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 893
             S D +  Q+     E I  L   K       +VE  +I    +  V E    G+  VV 
Sbjct: 681  VSNDKADSQK-----ETIEKLIPGKS------FVEASVIEKTKDSLVVEMEKTGLRGVVY 729

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
                SD+   I  ++     V  GS +   ++D      + +++LK   I   ++A   +
Sbjct: 730  VGHLSDLR--IEQNRAEIKKVRIGSKLNGLVIDKDTRTYIFNMTLKESLI---KDAKEGK 784

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVE---IVKEN--YLVLSLPEY---NHSIGYASVSDY 1005
                    +   K   +H  V ++ +    V  N  ++ L LP Y   N  I +      
Sbjct: 785  LPTSYSEVKTLDKSTPLHGYVKSVSDKGIFVAFNGKFVGLVLPSYAVENREIDF------ 838

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS-------ETETSS----SKR 1054
                  +K F   QSV A +  L +     R LL LK           T+T++       
Sbjct: 839  ------KKSFYMNQSVTAYI--LRTDDEQERFLLTLKEPKTKEKKKTSTDTAAINPIDSS 890

Query: 1055 AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFK 1112
             K  S + VGS+V+ +I  +K  +L +      HGR+ I EV D+ +++ +     SNFK
Sbjct: 891  IKDLSDFRVGSIVEGKIKGVKKNQLNIILADNLHGRVDIAEVFDNFADIKDKQQPLSNFK 950

Query: 1113 IGQTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1162
             G  +  +I+     KS K       ++K S L ELSIKPS L  S+I    + E   V 
Sbjct: 951  SGDLIKVKILGHHDVKSYKFLPISHSNLKNSVL-ELSIKPSELKSSKINIPSIDE---VK 1006

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            I   +TG++     +   LT+S  LKA+L + + + + S     +  F +G A+  HV S
Sbjct: 1007 IDSELTGFINNFAKDCVWLTVSPILKAKLPLFELSDDGSRFSAIEDSFPLGTALRVHVTS 1066

Query: 1223 INKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
            ++K    + +  R      I D  VD             DI+  RI K+      +++ +
Sbjct: 1067 VDKTHNFVTVSNRSKSVKSIDDVNVD-------------DILPARIIKVNDNY--VLLDL 1111

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
            G  + G    T+  N   S     YD+   + V  KV+ I R  +    + LSL++    
Sbjct: 1112 GHKITGISFITDALNDFSSSLHDEYDDKLNEMVSAKVISIDRETK---KINLSLQNE--- 1165

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
                 +S++          L+  EDL    +V+  +KNVT KG F+ LS  L+A V +S 
Sbjct: 1166 ----KASNM---------KLKSHEDLKQKDVVKAIIKNVTEKGIFVYLSSALEAFVPVSK 1212

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1459
            LSD Y++  +K +   + V G+V+S +  S  + +TL+ S+        +   S++ VGD
Sbjct: 1213 LSDSYLKDWKKFYKPMQSVIGKVISCDDNS-HILLTLRESEV-NGELKVLKGYSDIKVGD 1270

Query: 1460 IVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
            I  G IK V  +G+F+ ++NT N+ GL H +E+++   +N+ +I+  G++VK  +LK + 
Sbjct: 1271 IFNGNIKNVTDFGVFVKLDNTVNVSGLAHRTEIADTVPENLSSIFGVGDRVKAIVLKTNP 1330

Query: 1519 EKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1578
            EK++ISLG+K+SYF +        S+ ESDE  +EV               + D++   E
Sbjct: 1331 EKQQISLGLKASYFTSAKSKENSDSDLESDE--DEV---------------MADVNYNEE 1373

Query: 1579 DGGSLVLAQIESRASVPP-------LEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNR 1631
                  +   E ++S  P       L    D     ++   S +    +     + K ++
Sbjct: 1374 SEDEAEIDDEEPKSSKTPMTTDGLSLSAGFDWTANILNQAQSDDDLEDEMEDFTEVKRSK 1433

Query: 1632 HAKKKEK--EEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1689
            H + K K  E++  +I A         AP +  +FERL+  +PNSS +W+ YMAF L ++
Sbjct: 1434 HKRSKTKIIEDKTIDINAR--------APESVSDFERLIVGNPNSSVIWMNYMAFRLQLS 1485

Query: 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1749
            +++KAR IAERAL+TIN REENEKLNIW+A  NLEN +G   EE +  VF+R+ QY D  
Sbjct: 1486 EIDKAREIAERALKTINFREENEKLNIWIAMLNLENTFGT--EETLEDVFKRSCQYMDSF 1543

Query: 1750 KVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLL--KQQQEGVQAVVQ 1806
             +H  LL +Y+ +E+   A EL     KKF      VW+   + L+  KQ QE  ++V+ 
Sbjct: 1544 TMHNKLLSIYQMSEKLDKAAELFKATSKKFGSEKVSVWVSWGEFLINNKQAQEA-RSVLA 1602

Query: 1807 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866
             AL SLP+  H++ + + A LEF  G  +RGRS+FEG++++ PKR D+W++Y+DQEI++G
Sbjct: 1603 SALKSLPKRNHVELVRKFAQLEFAKGDPERGRSLFEGLIADAPKRIDIWNVYIDQEIKIG 1662

Query: 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            +      LFER I+  +  K+ KF F K+L++E+S  +E+ + YVK KA E+ E+
Sbjct: 1663 EKKKAEDLFERVINRKITRKQAKFFFNKWLQFEESQNDEKTVSYVKAKATEFAEN 1717



 Score =  163 bits (413), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 322/1411 (22%), Positives = 576/1411 (40%), Gaps = 198/1411 (14%)

Query: 54   FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
            FPRGG  +LT  E  ++  E   D  F          N+  KKK E  A     D     
Sbjct: 39   FPRGGASALTPLELKQVANEAANDVLFA---------NESSKKKAENSAETGTSDQRKSK 89

Query: 112  GDGISGKLPR--------------YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL 157
               ++ K                   + I  KN+  G +L G +  + ++D+ +     +
Sbjct: 90   KKKVTKKTDDDNEDSEEDIDVTSVIVSHINFKNLKVGSQLLGQIKYITKEDICVTFADNI 149

Query: 158  RG---LARAADALDPILDN------------------------EIEANEDNL-------L 183
             G   L   +D    IL+                         ++ +++  L       L
Sbjct: 150  SGYVPLTSISDQFTDILEQLDESMSDSSSDEEGEDEEEYESSDDVSSDKKPLAKKEVPNL 209

Query: 184  PTIFHVGQLVSCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
               F +GQ + C V     L+   K+  K+KI LS+  S++   L+ E + +   +   V
Sbjct: 210  RNYFKIGQWLRCSVSANTALETQSKKNKKKKILLSIEPSVV-NILTEEDLNKSTTVQCSV 268

Query: 241  KSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
            KSIEDHG  L  G+   TGF+ + +       ++KPG +  G +        VV L+  P
Sbjct: 269  KSIEDHGAALDLGIEGITGFISKKDYLNFD--ELKPGFVFLGNIAKKSGRSVVVNLNFSP 326

Query: 301  DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
                  ++      SID ++PG  V    +S+   G+         G +   HL  TF  
Sbjct: 327  KNKVSQIS------SIDAVIPGQSVDLLCESVQPTGITGKVYGLVPGFISNVHLH-TFDR 379

Query: 361  TNWKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYL------LHNRAPPSHVKVGDIY 411
               K+ Y     V  RIL         + + ++  P++      LH          G  +
Sbjct: 380  EEIKHKYAIGSNVQGRILASLNNKNGDKVLIISTLPHITSLENKLHEIENLEAFPFGYTF 439

Query: 412  DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 471
            D + +   D    L L +    +    +  I +  E E             +  R+LG+ 
Sbjct: 440  DSASIKGRDSEY-LYLALDEDRIGEVHHSKIGNAFESE------------KISARVLGYN 486

Query: 472  HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLP 529
             ++ +          +      +D+K G ++ G ++++V S G  ++ F     A  P  
Sbjct: 487  SIDNVFQLSTDPETLKLKYVRAADIKIGELLTGCEIVSVSSKGIQLKIFNNQFSAFVPPI 546

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV---KSKLAILSSYAEAT- 584
            H+S+  +V P +KFK+G+++  RVL V  +  I VT KKTLV   +++  +L SY  A  
Sbjct: 547  HISDTRLVYPERKFKIGSKIKGRVLSVDFRGHILVTLKKTLVNAEENETPLLDSYKAAQT 606

Query: 585  ---DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                   T   +   + +GC V F+ G+ GF P +E+       P     +GQ +  +++
Sbjct: 607  IKDSNSKTTATVQYFKPNGCVVSFFGGISGFLPNTEISEAFVKRPEEHLRLGQTILVKLL 666

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                   RI ++  +   +        + L+   S V   V   T +++VV +   G  +
Sbjct: 667  QVEKERSRIIVTCKVSNDKADSQKETIEKLIPGKSFVEASVIEKTKDSLVVEMEKTGL-R 725

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ-- 751
            G +   HL+D  +E        ++ G + +  LV+D ++   +  ++ K SLI  A++  
Sbjct: 726  GVVYVGHLSDLRIEQNRAEIKKVRIGSKLNG-LVIDKDTRTYIFNMTLKESLIKDAKEGK 784

Query: 752  LPSDASHIHP---NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
            LP+  S +     ++ +HGYV ++ + G FV F G+  G    S AV+ +  D  K++Y+
Sbjct: 785  LPTSYSEVKTLDKSTPLHGYVKSVSDKGIFVAFNGKFVGLVLPSYAVENREIDFKKSFYM 844

Query: 809  GQSVRSNILDVNSETGRITLSL-----KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
             QSV + IL  + E  R  L+L     K+   +STD +           I  + SS    
Sbjct: 845  NQSVTAYILRTDDEQERFLLTLKEPKTKEKKKTSTDTA----------AINPIDSS---- 890

Query: 864  SELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGAT 913
              +K +  F +GS++EGK+   + N   ++++   H         D +  I   Q   + 
Sbjct: 891  --IKDLSDFRVGSIVEGKIKGVKKNQLNIILADNLHGRVDIAEVFDNFADIKDKQQPLSN 948

Query: 914  VESGSVIQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
             +SG +I+  IL   DV         S K + I      NS  +   K  + ++SK    
Sbjct: 949  FKSGDLIKVKILGHHDVK--------SYKFLPISHSNLKNSVLELSIKPSELKSSK---- 996

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPS 1030
               + +I E+  ++ L   +  +     + +VS     K P  +  +  S  + +     
Sbjct: 997  -INIPSIDEVKIDSELTGFINNFAKDCVWLTVSPILKAKLPLFELSDDGSRFSAIEDSFP 1055

Query: 1031 SSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGSLVQAEITEIKPLELRLKFGIGF 1087
              TA R+ +     +    + S R+K   S D   V  ++ A I ++    + L  G   
Sbjct: 1056 LGTALRVHVTSVDKTHNFVTVSNRSKSVKSIDDVNVDDILPARIIKVNDNYVLLDLGHKI 1115

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1147
             G   IT+  +D S+ + + + + K+ + V+A++I  S   + KK     LS++    + 
Sbjct: 1116 TGISFITDALNDFSSSLHDEYDD-KLNEMVSAKVI--SIDRETKK---INLSLQNEKASN 1169

Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1207
             ++ S    ++ DV     V   +  V  +   + +S  L+A  F+  S    S L++++
Sbjct: 1170 MKLKSHEDLKQKDV-----VKAIIKNVTEKGIFVYLSSALEA--FVPVSKLSDSYLKDWK 1222

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            + +   ++V G V+S +    +L L LR  +     K +   +D     I  GDI  G I
Sbjct: 1223 KFYKPMQSVIGKVISCDDNSHIL-LTLRESEVNGELKVLKGYSD-----IKVGDIFNGNI 1276

Query: 1268 SKILSGVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRG 1325
              +     G+ V++    ++ G  H TE+ +    +  S +  G  VK  VL   +T   
Sbjct: 1277 KNVTD--FGVFVKLDNTVNVSGLAHRTEIADTVPENLSSIFGVGDRVKAIVL---KTNPE 1331

Query: 1326 TFHVELSLRSSL--DGMSSTNS-SDLSTDVD 1353
               + L L++S      S  NS SDL +D D
Sbjct: 1332 KQQISLGLKASYFTSAKSKENSDSDLESDED 1362


>gi|344274767|ref|XP_003409186.1| PREDICTED: protein RRP5 homolog [Loxodonta africana]
          Length = 1872

 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 398/1475 (26%), Positives = 676/1475 (45%), Gaps = 169/1475 (11%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG     + E+    +       ++  E E+ +R   +K   K KK + +  E +  
Sbjct: 8    FPRGGTRKAHKSEKAFQQSVEQDNLFDITTEEESTKRKKSQKGPAKTKKLKIEKRENIKL 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              +T++ +  GM++ G V EV++ +LVI LP GL+G  +  + 
Sbjct: 68   VKEKF------------EILTVETLCEGMRILGCVKEVSDLELVISLPNGLKGFVQVTEI 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  +   +K  GK+ + LSL   
Sbjct: 116  CDAYTKKLNEQVAQEEPLKDLVRLPELFSPGMLVRCVVSSVGITEK--GKKSVKLSLNPR 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             +   LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +
Sbjct: 174  NVNGVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVSGNRAFLPLQKAQEDTRQKNKGAKL 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  V+  +  +  VV LS     VS  +  + +  +++ L+PG++V  +VQ +  
Sbjct: 234  KVGQYLNCVIEEVKSSGGVVSLSVGHSEVSTAIATEEQNWTLNNLLPGLVVKGQVQKVTP 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ ++FL+YFTG VD  HL+     T + N     + V A ILF+ P +RAV L+L P 
Sbjct: 294  FGLTVNFLSYFTGLVDFMHLEPKKTGTYFSN-----QAVRACILFIHPRTRAVRLSLRPV 348

Query: 395  LLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             L    P + +    +G + D   V       G    +    +   AY   S ++  +  
Sbjct: 349  FLQPGRPLTRLSCQHLGAVLDDLPVHGFFNKAGATFKLKDGAL---AYARFSHLSNSKNV 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K G+  + RI+ +  ++ LA   L+ S  E    ++ D KPG VVKG V+ +  
Sbjct: 406  FKPEIFKPGNTHKCRIIDYSPMDELALLSLRTSIIEAQYLSYHDTKPGAVVKGTVLTIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 569
            +G +V+    ++ L P  H+++  +  P KK+ VG E+  RVL    ++K++ +T KKTL
Sbjct: 466  YGMLVKVGEQIRGLVPPMHLADILMKNPEKKYSVGDEVKCRVLVCDPEAKKLMMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V+S+L  ++ YA+A   L THG+I +++  GC V+FYN VQG  P+ EL  +    P ++
Sbjct: 526  VESRLPAITCYADAKPGLQTHGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYIPAPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDD--------LVKLGSLVSGVVDV 679
            ++ GQV+K  +++  PA  R+ LSF +   P    E +         V +G LV   V  
Sbjct: 586  FYPGQVMKVVVLNCEPAKERMLLSFKLLSDPEAKKEREGGSQKKRRAVHVGQLVDVKVVE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T + + V V+      G +P  HL+DH+ +  ++   ++ G    ++L L +E   +LL
Sbjct: 646  KTEDGLEVAVLPHSIP-GFLPIPHLSDHVPNGPLLYHWLQAGDTLHRVLCLQSE-GRVLL 703

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S IHP  ++ G+V +I + G FV+F   L+G AP++   D 
Sbjct: 704  CRKPALVSAVEGGQDPKSFSEIHPGMLLMGFVKSIKDYGVFVQFPSGLSGLAPKAAMSDK 763

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
                 S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      LL + +  LQ
Sbjct: 764  FVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDVA-TTSLLLLSQCLEELQ 822

Query: 858  S-----SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQL 909
                  S  +   ++ +     G +++ +V E  + G VV       V G +   + +  
Sbjct: 823  GVRSLMSNRDSVLIQTLAEMTPGMILDLEVQEVLEDGSVVF--GGGPVPGLVLRASRYHR 880

Query: 910  AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
            AG  VESG   +A +L+V   +  V +SL    +        NR+ +K K+  E      
Sbjct: 881  AGQEVESGQKKKAVVLNVDMLKLEVHVSLCQDLV--------NRKHKKLKKGSE------ 926

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMAL 1028
                  A V+ ++E++ + SL E      ++  S  N T +F  ++   GQ V   + A 
Sbjct: 927  ----YQATVQHLEESFAIASLVETGQLAAFSLTSHLNDTFRFDSEKLQVGQGVSLALKAT 982

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQA 1069
                T   L+L ++  +   T    R +                   KK +  +G +V  
Sbjct: 983  QPGVTG--LILAVEGPAAKRTMRQTRKESETVDEDEESDPALVVGTVKKHTLSIGDMVTG 1040

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KS 1125
             +  IK   + +    G  G IH + + DD   V  +  S  K+G+TVTAR+I     K+
Sbjct: 1041 TVKSIKATHVVVTLEDGVIGCIHASNILDD-VPVGTSPTSKLKVGKTVTARVIGGRDVKT 1099

Query: 1126 NK--PDMKKSFLW---ELSIKPSML-----TVSEIGSKLLFEEC-DVSIGQRVTGYV--Y 1172
             K  P     F+    ELS++PS L     T     S    E+      GQ VT ++  Y
Sbjct: 1100 YKFLPISHPRFIRTIPELSVRPSELEKDGHTALNTHSVSPSEKIKQYQAGQTVTCFLKRY 1159

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
             V  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+  +  K  L L
Sbjct: 1160 NVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALNATVVGPDSCKAFLCL 1219

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
             L             I    ++    +G++  GR+ K+     GL V      +GR    
Sbjct: 1220 SL-------------IGPHKLE----KGEVAMGRVVKVTPN-EGLTVSFPFGKFGRASIF 1261

Query: 1293 ELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1352
             + +     PL  +   + V+C VL  +  V     + LSLR      SS  + +  + +
Sbjct: 1262 HVSDSYSETPLEDFVPQKIVRCCVLSTAGHV-----LTLSLR------SSRTNPETKSKI 1310

Query: 1353 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE- 1411
            + P   +  I+D+    +++GYVK V   G    L   +      S++S     SP K+ 
Sbjct: 1311 EDP--EINSIQDIEEGQLLRGYVKAVEPHGVLFSLGPSVVGLARYSHVSQ---YSPSKKA 1365

Query: 1412 -----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
                  P GKL+  ++LS+      V ++   SD+
Sbjct: 1366 LYSRYLPEGKLLTAKILSLNHKRSLVRLSFLPSDT 1400



 Score =  280 bits (717), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 138/285 (48%), Positives = 202/285 (70%), Gaps = 4/285 (1%)

Query: 1639 EEREQEIRAAEERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            ++ E+E+   EE L++ +  P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1583 QKAEKELSRIEEALMDPRRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1642

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  
Sbjct: 1643 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1700

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1816
            +Y ++E+ + A EL  +M+K+F+    VW++    LL + Q G    V+QRAL  LP+ +
Sbjct: 1701 IYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGSFLLGRGQAGASHRVLQRALECLPQKE 1760

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
            H+  I++ A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1761 HVDVIARFAQLEFQLGDKERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGTQKEVRDIFE 1820

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            R I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1821 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1865



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 6/167 (3%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D  P  +V+G V  +   G  + +  ++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 449  DTKPGAVVKGTVLTIKPYGMLVKVGEQIRGLVPPMHLADILMKNPEKKYSVGDEVKCRVL 508

Query: 1424 SVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
              +P +K++ +TLK +  +SR  +   I   ++   G    G I RV+  G  +   N +
Sbjct: 509  VCDPEAKKLMMTLKKTLVESRLPA---ITCYADAKPGLQTHGFILRVKDCGCIVKFYN-D 564

Query: 1482 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            + GL    ELS +++   ET++  G+ +KV +L  +  K R+ L  K
Sbjct: 565  VQGLVPKHELSAEYIPAPETVFYPGQVMKVVVLNCEPAKERMLLSFK 611



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 100/245 (40%), Gaps = 33/245 (13%)

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 1064
            +   K P K+F  GQ++ ATV+  P S  A   L L+                    + G
Sbjct: 1187 FKVLKHPDKKFRIGQALNATVVG-PDSCKAFLCLSLIGP---------------HKLEKG 1230

Query: 1065 SLVQAEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
             +    + ++ P E L + F  G  GR  I  V+D  S   E    +F   + V   +++
Sbjct: 1231 EVAMGRVVKVTPNEGLTVSFPFGKFGRASIFHVSDSYS---ETPLEDFVPQKIVRCCVLS 1287

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWA 1179
             +         +  LS++ S  T  E  SK+   E     D+  GQ + GYV  V+    
Sbjct: 1288 TAG-------HVLTLSLRSSR-TNPETKSKIEDPEINSIQDIEEGQLLRGYVKAVEPHGV 1339

Query: 1180 LLTISRHLKA-QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
            L ++   +     +   S Y PS+   + R    GK +T  +LS+N ++ L+RL   P  
Sbjct: 1340 LFSLGPSVVGLARYSHVSQYSPSKKALYSRYLPEGKLLTAKILSLNHKRSLVRLSFLPSD 1399

Query: 1239 DGISD 1243
             G  D
Sbjct: 1400 TGKPD 1404



 Score = 44.3 bits (103), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
            + S +H G +++G +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V 
Sbjct: 721  SFSEIHPGMLLMGFVKSIKDYGVFVQFP-SGLSGLAPKAAMSDKFVTSTSDHFVEGQTVV 779

Query: 1511 VKILKVDKEKRRISLGMKSS 1530
             K+  VD+EK+R+ L ++ S
Sbjct: 780  AKVTNVDEEKQRMLLSLRLS 799



 Score = 41.6 bits (96), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 11/140 (7%)

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS-----EINNLS 1453
            ++SD Y E+P ++F   K+V   VLS       + ++L++S +   ++S     EIN++ 
Sbjct: 1262 HVSDSYSETPLEDFVPQKIVRCCVLSTA--GHVLTLSLRSSRTNPETKSKIEDPEINSIQ 1319

Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDHVDNIETIYRAGEKVK 1510
            ++  G ++ G +K VE +G+  ++   ++VGL    HVS+ S             G+ + 
Sbjct: 1320 DIEEGQLLRGYVKAVEPHGVLFSL-GPSVVGLARYSHVSQYSPSKKALYSRYLPEGKLLT 1378

Query: 1511 VKILKVDKEKRRISLGMKSS 1530
             KIL ++ ++  + L    S
Sbjct: 1379 AKILSLNHKRSLVRLSFLPS 1398


>gi|121716713|ref|XP_001275889.1| rRNA biogenesis protein RRP5, putative [Aspergillus clavatus NRRL 1]
 gi|119404046|gb|EAW14463.1| rRNA biogenesis protein RRP5, putative [Aspergillus clavatus NRRL 1]
          Length = 1819

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 354/1326 (26%), Positives = 660/1326 (49%), Gaps = 135/1326 (10%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V +G++V G ++  ++ P  V  ++  +A G + G +P+ H AD        K   + G 
Sbjct: 554  VTVGAVVKGKIEKLLIGPTGVDGLIVALADGIT-GLVPSMHFADAALQFPEKK--FREGM 610

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
                ++L ++ ++  + L+ K SL+NS   +  D   I P +   G + NI   G  V+F
Sbjct: 611  AITARILSVNLQNRQIRLTLKKSLLNSESAIWKDYEDIVPGAQSPGTIVNIQPHGAVVQF 670

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + GF P S+  +    D S+ +  GQ V  + L V+   G++ +S K        ++
Sbjct: 671  YGSVRGFLPVSEMSEAFIKDPSQHFRQGQVVNVHALSVDPSLGKLAVSCKDP------ST 724

Query: 842  FMQEHFLLEEKI--AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
            F + +    EKI   ML            V G +     +  + + ++FG+V   +    
Sbjct: 725  FTESYKKAFEKIQPGML------------VTGTVFEKSADDLLLKLDEFGLVARLDLAHV 772

Query: 900  VYGFITHHQLAGATVESGSVIQ-AAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
            V G         + +  G  +    +LD+ +A RL+ +S +           S ++A K+
Sbjct: 773  VDGSYPKQSSTLSKIRVGQKLNDLLVLDIQRARRLIKVSARA----------SLKKASKQ 822

Query: 959  KRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN 1017
                   +D+     V   V  I  +   V  L      +    +++ +  K P    + 
Sbjct: 823  GSLPAKFEDVQEGTEVTGFVRNITADGLFVEFLGGITGLVPKRLLAEESASK-PDYGMVK 881

Query: 1018 GQSVIATVMAL------------PSS-STAGRLLLLLKAISETETSSS---KRAKKKSSY 1061
             Q V ATV ++            PS  ++AG      K     +  ++   +  +  S +
Sbjct: 882  SQIVTATVHSVDADFRRFILSMNPSELTSAGPKKPAPKPTPSNDAVANAVDESIEAMSDF 941

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTA 1119
              G  V+ ++  +K  ++ ++      GRI ++EV D+  ++ +       F+  Q ++A
Sbjct: 942  TFGRTVKCKVVSVKATQVNVQLADNVQGRIDVSEVFDEWEDIKDRKQPLRFFRPKQIISA 1001

Query: 1120 RIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            RI+   +  + K         K  ++ELSIKPS L  S   + L  E+  V  G    G+
Sbjct: 1002 RILGIHDARNHKFLPISHRSGKFPVFELSIKPSFLEASN-PTPLNLEQ--VQTGSSWLGF 1058

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
            +  + ++   + +S +++ +L  +D++ + S L + ++ F IG A+  HV +++ EK  L
Sbjct: 1059 INNIADDCLWVNLSPNVRGRLRFMDASDDLSLLADVEKHFPIGSALKVHVTAVDTEKGRL 1118

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
             L  +   D +S   + +           G +V GR++K+      +++Q+   + G V+
Sbjct: 1119 DLAAKQRSDKLSFSDITV-----------GMVVPGRVTKVTEK--QVIMQLSDSIVGAVN 1165

Query: 1291 FTELKN-ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
              +L +    +DP + Y++ + ++  V+ + +  +    + LSLR S    SS +  D  
Sbjct: 1166 LIDLSDDYSKADP-TVYNKNEVLRACVVGVDKANK---KISLSLRPSKVLSSSLSVQD-- 1219

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
                     +  ++ L  N +V+G+VK V   G F+ L   + A V +S+LSD Y++  +
Sbjct: 1220 -------PEITSMKQLKVNDVVRGFVKRVADSGLFVALGHDVTAYVRVSDLSDSYLKEWK 1272

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1469
              F + +L+ GR+  V+P   R+++TLK S      ++ +  +++L VG IV G++++VE
Sbjct: 1273 DSFQVDQLIKGRITLVDPEQGRLQMTLKESALDPNYKAPVT-INDLKVGQIVTGKVRKVE 1331

Query: 1470 SYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             +G FI ++ + N+ GLCH SE+++  V+N + +Y  G+ VK KI+K+D+++ +IS  +K
Sbjct: 1332 EFGAFIVVDRSANISGLCHRSEMADKRVENAKALYEEGDVVKAKIIKIDRDQGKISFSLK 1391

Query: 1529 SSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQI 1588
            +S+F++D ++   S E++  + +   G  +      +S    ++ D +   GG  +    
Sbjct: 1392 ASHFRDDDEDESGSDEDDVSQGVSLDGMEDVDFEGSDSDDDDEEGDDDESMGGVDLEDDS 1451

Query: 1589 ESRASVPPLEVNLDDEQPDMDNGISQN--------QGHTDEAKTIDEKNNRHAKKKEKEE 1640
            +         V +D+   +   G+ +         +   DEA   D ++   +++K+K+ 
Sbjct: 1452 DDDEDDEDSNVEMDNAPSNRKGGLGEAGFDWSGNVRDEEDEAARSDSEDEDDSRRKKKKN 1511

Query: 1641 REQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1700
            R+ EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + ++EKAR IAER
Sbjct: 1512 RKPEIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLQYMAFQLELGELEKAREIAER 1571

Query: 1701 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1760
            AL+TI++ ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++++  L  +Y 
Sbjct: 1572 ALRTISLGQDTEKLNIWVALLNLENTYGN--DDTLEEVFKRACQYNDTQEIYDRLTSIYI 1629

Query: 1761 RTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKH 1817
            ++ +N+ AD+L    + KK  ++ K +L     L       E  + ++ RAL SLP H H
Sbjct: 1630 QSGKNEKADDLFRTALKKKISNTPKFFLNYASFLFDSMAAPERGRGLLPRALQSLPSHTH 1689

Query: 1818 IKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875
            ++  S+ A LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI+ GD + +R LF
Sbjct: 1690 VETTSKFAQLEFRSPNGDIERGRTVFEGLLSSFPKRIDLWNVLLDLEIKNGDAEQVRRLF 1749

Query: 1876 ERAISL---------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKA 1915
            ER + +                L PK+ +F+FKK+L +E+ +     G  + +E +K KA
Sbjct: 1750 ERVLGIRDVRKGAAAPLDASKKLRPKQARFMFKKWLTFEEKLAADNGGNVKMVEEIKAKA 1809

Query: 1916 MEYVES 1921
             +YV+S
Sbjct: 1810 ADYVKS 1815



 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 214/895 (23%), Positives = 387/895 (43%), Gaps = 89/895 (9%)

Query: 21  KASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEA 80
           ++SK+Q K    +  +A  A +L++  DD+ P FPRGGG  LT  E+ +IH +   +   
Sbjct: 29  ESSKDQKKQKTSESANAPNASELSVLRDDE-PSFPRGGGSVLTPLEKKQIHIQATKDVLF 87

Query: 81  VERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANK--------------- 125
            +RG     K+       + ++   ++G    +  S K  +                   
Sbjct: 88  EQRG----PKQSSGNFVDEDDDEDVEMGDADDNATSTKQSKKRKTKGKKRAEQEAKDKQG 143

Query: 126 -----ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA-------DALDPIL-D 172
                +  K +  G  + G V+ +N  ++ + LP  L G            D ++ IL D
Sbjct: 144 VRIEGLNFKRLVPGSMVLGQVSSINAHNIGLSLPNNLTGYVSLTAISKVLEDKIEKILND 203

Query: 173 NEIEA---------NEDNLLPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSL 220
           NE E           +   L   F++GQ +   V+ +     D     K++I L++    
Sbjct: 204 NEKEGSDAEDESDDEDSLDLKNYFYLGQYLRAYVVSVGSNSADAPSKNKKRIELTIDPRQ 263

Query: 221 LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGI-DVKPG 277
              GL+   ++    + A V S+EDHG ++  G+   +  GF+    +  N+    +K G
Sbjct: 264 TNTGLAKTDLELNTAVQASVVSVEDHGLVMDLGIEGANVKGFMSSKEIDFNTKYSSIKEG 323

Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILEN 335
            +   ++   +    VV LS++  +              +I+  +PG      +  +  +
Sbjct: 324 SVFLCMITGQNANGSVVKLSANLQSAGSIRKSHYLSTASTINSFLPGTAAEILLTDVSSS 383

Query: 336 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNP 393
           G++   +     TVD+          +    +    K+  RI+   P+S    VG +L  
Sbjct: 384 GLIGKIMGMLDATVDLVQSGANSGKEDLAKKFQIGAKIKGRIVCTFPSSTPFKVGFSLLD 443

Query: 394 YLLH----NRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA 446
           ++L        P +      +  I  ++KVV+VD GLG+ + I  T      +V +S +A
Sbjct: 444 HVLRFATEGHGPGTSEDAPAISAIVPEAKVVKVDPGLGVYVKIGDT--KKMGFVHVSRLA 501

Query: 447 EEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
           + +V  +      ++  S    R++G+  L+ L     +    E       DV  G VVK
Sbjct: 502 DGKVENIAPDHGPFRVDSVHEARVVGYSALDDLYLLSYERKVIEQPFLRLEDVTVGAVVK 561

Query: 504 GKV-------IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           GK+         VD  G IV    G+  L P  H ++  +  P KKF+ G  +  R+L V
Sbjct: 562 GKIEKLLIGPTGVD--GLIVALADGITGLVPSMHFADAALQFPEKKFREGMAITARILSV 619

Query: 557 --KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
             ++++I +T KK+L+ S+ AI   Y +      + G I  I+ HG  V+FY  V+GF P
Sbjct: 620 NLQNRQIRLTLKKSLLNSESAIWKDYEDIVPGAQSPGTIVNIQPHGAVVQFYGSVRGFLP 679

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKL 669
            SE+      +PS  +  GQVV    +S  P+  ++ +S    P+  +E      + ++ 
Sbjct: 680 VSEMSEAFIKDPSQHFRQGQVVNVHALSVDPSLGKLAVS-CKDPSTFTESYKKAFEKIQP 738

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQL 727
           G LV+G V   + + +++ +   G     +   H+ D  + + ++ + S I+ G + + L
Sbjct: 739 GMLVTGTVFEKSADDLLLKLDEFGLV-ARLDLAHVVDGSYPKQSSTL-SKIRVGQKLNDL 796

Query: 728 LVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           LVLD + +  L+  SA+ SL  +++Q  LP+    +   + V G+V NI   G FV FLG
Sbjct: 797 LVLDIQRARRLIKVSARASLKKASKQGSLPAKFEDVQEGTEVTGFVRNITADGLFVEFLG 856

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            +TG  P+    +   +         Q V + +  V+++  R  LS+  S  +S 
Sbjct: 857 GITGLVPKRLLAEESASKPDYGMVKSQIVTATVHSVDADFRRFILSMNPSELTSA 911



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 157/373 (42%), Gaps = 33/373 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +      
Sbjct: 1044 LNLEQVQTGSSWLGFINNIADDCLWVNLSPNVRGRLRFMDASDDLSLLADVEKH------ 1097

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D +K         L L        LS   +  GMV+   V  + 
Sbjct: 1098 --FPIGSALKVHVTAVDTEKGR-------LDLAAKQRSDKLSFSDITVGMVVPGRVTKVT 1148

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     S  G +   +L+++      P +     +L+  V  +D+  K + LS  
Sbjct: 1149 EKQVIMQLS-DSIVGAVNLIDLSDDYS-KADPTVYNKNEVLRACVVGVDKANKKISLSLR 1206

Query: 300  PDTVSKCVT--KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V       +D +  S+  L    +V   V+ + ++G+ ++     T  V +  L ++
Sbjct: 1207 PSKVLSSSLSVQDPEITSMKQLKVNDVVRGFVKRVADSGLFVALGHDVTAYVRVSDLSDS 1266

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQ 413
            +    WK+ +   + +  RI  VDP    + +TL    L  + +AP +   +KVG I   
Sbjct: 1267 Y-LKEWKDSFQVDQLIKGRITLVDPEQGRLQMTLKESALDPNYKAPVTINDLKVGQIV-T 1324

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             KV +V+     ++   S  +S   +   S++A++ V   +  Y+EG  V+ +I+     
Sbjct: 1325 GKVRKVEEFGAFIVVDRSANISGLCHR--SEMADKRVENAKALYEEGDVVKAKIIKIDRD 1382

Query: 474  EGLATGILKASAF 486
            +G  +  LKAS F
Sbjct: 1383 QGKISFSLKASHF 1395


>gi|347837370|emb|CCD51942.1| hypothetical protein [Botryotinia fuckeliana]
          Length = 1792

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 409/1502 (27%), Positives = 701/1502 (46%), Gaps = 160/1502 (10%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS------EFEIVKPGKKFKVGAELVF 551
            PG  V+  ++ V S G   +  G V     L H        E E     KKFK+GA++  
Sbjct: 360  PGTAVETLIVDVSSRGLTGKVMGMVDVTADLMHSGTSVMNQELE-----KKFKIGAKVRG 414

Query: 552  RVLGV----KSKRITVT---HKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKH 599
            RV+        +++ ++   H  +L + +     +     D L     +    I K+E  
Sbjct: 415  RVICTFPNSDPQKLGISLLDHVTSLTQQQAGKPGNKVNPLDTLPLSTIVEEVTIKKVESG 474

Query: 600  -GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL 652
             G FV     G+ GF   S +    ++   E +  Y VG V + R++  +S+     I+L
Sbjct: 475  VGLFVDVGIKGIPGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVLGYNSLDGVYLISL 534

Query: 653  --SFMMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD 706
              S + +P    ED  +K+G +V G V+  +V    V  ++  +A+  S G +P  HLAD
Sbjct: 535  EKSVLEQPYLRIED--LKIGEVVKGKVEKLIVNDKGVGGLLVNLAENIS-GLVPETHLAD 591

Query: 707  -HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 764
              L H    +   K G     ++L  D     + L+ K +L+NS          I     
Sbjct: 592  IQLLHP---EKKFKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSESPALVSYDDITVGMQ 648

Query: 765  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
              G + NI+ TG  V+F G + GF P S+  +    D ++ + +GQ V  ++L V+ E  
Sbjct: 649  SPGTIVNILNTGAVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIGQVVNVHVLKVDPEAK 708

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
            ++T+S K             ++  + E ++ L   K N      ++G  + +++      
Sbjct: 709  KLTVSCKDPSVFGLAQQNALKNLKIGEIVSALVIEKSNDDISVEIQGLGLKAILP----- 763

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFI 943
                G +    E+     F          +  G V+   A+LD  + +RL+ L+ K   +
Sbjct: 764  ---VGHLTDGSENKSRSSF--------KNIRVGQVLSDLAVLDKLEPKRLIVLTNKPALV 812

Query: 944  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS-------------L 990
                     + AQ K   R    D+   +TV+  V+ +    + +              +
Sbjct: 813  ---------KAAQNKTLLR-MFDDVKEKKTVHGFVKNITLTAVFVQFGGGLTGLLPKNKI 862

Query: 991  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 1050
            PE N  +       Y T +       +GQ      MA  +S       L   A  E    
Sbjct: 863  PEKNLRLPDFGFKKYQTIEVKVLTIDHGQRRFLLSMADATSDKKSNEPLAPGANQEAVNP 922

Query: 1051 SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLF 1108
              +  K      +G L +A ++ +K  ++ ++      GRI +++  D  S++   +   
Sbjct: 923  IDETIKSIEDITLGRLTKARVSSVKDTQVNVQLADNIQGRIDVSQAFDSWSDIKSKKQPL 982

Query: 1109 SNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEEC 1159
              F   Q V  R++   +  + +         K+ ++ELS KPS  T S      L +  
Sbjct: 983  KTFSPKQIVDVRVLGIHDARNHRFLPISHRSGKTLVFELSAKPSDQTESAQDPVSLDK-- 1040

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
             + +G     +V  V  +   + IS +++ ++  LD + + S L++    F IG A+  H
Sbjct: 1041 -IKVGSSWLAFVNNVGVDCLWVNISPNVRGRISALDVSDDVSLLKDLAANFPIGSAIRVH 1099

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGL 1277
            V  ++ E   L L  R  QD               TF  + +G IV G+++++      +
Sbjct: 1100 VKGVDVETNRLDLSARSSQDS-----------EALTFDKLSQGMIVPGKVTRV--NERQV 1146

Query: 1278 VVQIGPHLYGRVHFTEL-KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            +VQ+   +   ++ T+L  +   +DP S Y +   V+  V +I    +    V LS R+S
Sbjct: 1147 MVQLTDSISAPINLTDLCDDYSEADP-SKYSKNDIVRVCVTDIDVPNK---RVRLSTRAS 1202

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
                SS    D           +  I  L  N IV+G+VK+V  KG F+ L   + A V 
Sbjct: 1203 RVMNSSAAVQD---------PEISSISQLKVNDIVRGFVKHVADKGLFVNLGGNVTAYVR 1253

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSN 1454
            +S+LSD Y++  + EF + +LV G+V  V+ +   V+++LK S  D    +    N++  
Sbjct: 1254 ISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLSLKPSVIDKDYVAPLTFNDI-- 1311

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
              V  +V G+I++VE +G+FI ++ + N+ GLCH SE++E  V +++ +Y  G+ VK  +
Sbjct: 1312 -QVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLYSEGDAVKAIV 1370

Query: 1514 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA---- 1569
            LK+D EK+RIS  MK+S+F+ D +     S+++  + ++           ++        
Sbjct: 1371 LKMDTEKKRISFSMKASHFE-DGNESDDESDDDGVDGVKLDSMDIDDDDDDDDDSEGGID 1429

Query: 1570 ---VQDMDMESEDGGSLVLAQIE---SRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1623
               VQD++  +EDG     +  E   +   VP L     D   D+   + Q  G ++   
Sbjct: 1430 LDDVQDLESAAEDGDEASDSDEEMPDAEGDVPALSAGGFDWSADL---LDQADGQSN--- 1483

Query: 1624 TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMA 1683
             +D  +    +K +K++R+ EI+      L+ + P++  +FERL+   P+SS +W +YMA
Sbjct: 1484 -VDSDDEGTEEKPKKKKRKAEIKVDRTGDLDANGPQSISDFERLLLGQPDSSSLWTQYMA 1542

Query: 1684 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1743
            F + ++++ KAR IAERA++TIN+REE EKLNIW+A  NLE  YG+  +E V  VF+RA 
Sbjct: 1543 FQMQLSELGKAREIAERAIKTINMREETEKLNIWLALLNLEIAYGS--DETVEAVFKRAC 1600

Query: 1744 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL---LKQQQEG 1800
            QY D ++VH  L  +Y ++ +NK ADEL   + KKF  S  VW+     L   L     G
Sbjct: 1601 QYNDAQEVHERLASIYIQSGKNKKADELFQALTKKFSQSPTVWVNYAHFLFNTLGAPDRG 1660

Query: 1801 VQAVVQRALLSLPRHKHIKFISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIY 1858
             +A++ RA  SLP H H+    + A LEF++  G  +RGR++FEG+L+++ KR D+W   
Sbjct: 1661 -RALLPRATQSLPPHTHLPLTLKFAALEFRSEHGSPERGRTIFEGVLAKWSKRLDIWGQL 1719

Query: 1859 LDQEIRLGDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917
            LD EI+ GD  ++RG+FER   +  L PK     FK++ E+E++ G+++  E V+  A E
Sbjct: 1720 LDLEIKAGDKSIVRGVFERVARIKGLKPKGAMGWFKRWTEWEEANGDKKSQEKVRAIAEE 1779

Query: 1918 YV 1919
            +V
Sbjct: 1780 WV 1781



 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 214/804 (26%), Positives = 353/804 (43%), Gaps = 71/804 (8%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG   LT  E  +I  ++DA  + +      K+ K   + +  A+ T     S    
Sbjct: 65  FPRGGASVLTPLEHKQI--QIDATRDVLFEQYGAKSSKPDGEDQEGADATKVKKKSKGKG 122

Query: 114 GI-----SGKLPRYANKI---TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
                    ++     KI   + K + +G  + G V+++N  D+ + LP  L G      
Sbjct: 123 KSKKAAHDSEVEEETVKIEGLSYKRLVSGSLVLGQVSQINATDIALSLPNNLTGYVPITA 182

Query: 166 ALDPILDNEIEANEDNL-------------LPTIFHVGQLVSCIVLQLDDDKKEI----G 208
             D + +                       L  IF +GQ +   V+   DD        G
Sbjct: 183 ISDKVTERVEAIAAAEEDDADDEVEVEDIDLKKIFSLGQYLRAYVVSTSDDTNTATLGKG 242

Query: 209 KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNL 266
           KR+I LSLR      G++ + +     L A V S+EDHG I++ GL      GF+   ++
Sbjct: 243 KRRIELSLRPQHANNGVTPQNLINNTTLMASVTSVEDHGLIMNIGLEDTGIRGFMGAKDI 302

Query: 267 A-ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGM 323
             E    DV+ G +   +V  +    K V L +D   +      +      ++D  +PG 
Sbjct: 303 GYEVVLADVQEGAVFLCMVTGLSSNGKTVKLCADTQKIGNVKKSNYLTDAPTVDAFLPGT 362

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT 383
            V T +  +   G+    +     T D+ H   +      +  +    KV  R++   P 
Sbjct: 363 AVETLIVDVSSRGLTGKVMGMVDVTADLMHSGTSVMNQELEKKFKIGAKVRGRVICTFPN 422

Query: 384 S--RAVGLTLNPY---LLHNRA--------PPSHVKVGDIYDQSKVVRVDRGLGLLLDIP 430
           S  + +G++L  +   L   +A        P   + +  I ++  + +V+ G+GL +D+ 
Sbjct: 423 SDPQKLGISLLDHVTSLTQQQAGKPGNKVNPLDTLPLSTIVEEVTIKKVESGVGLFVDVG 482

Query: 431 STPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFE 487
              +  P +V IS V + ++  LE+    YK GS  R R+LG+  L+G+    L+ S  E
Sbjct: 483 IKGI--PGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVLGYNSLDGVYLISLEKSVLE 540

Query: 488 GLVFTHSDVKPGMVVKGKV---IAVDS--FGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
                  D+K G VVKGKV   I  D    G +V     +  L P  H+++ +++ P KK
Sbjct: 541 QPYLRIEDLKIGEVVKGKVEKLIVNDKGVGGLLVNLAENISGLVPETHLADIQLLHPEKK 600

Query: 543 FKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           FK G  +  RVL      ++I +T KKTLV S+   L SY + T  + + G I  I   G
Sbjct: 601 FKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSESPALVSYDDITVGMQSPGTIVNILNTG 660

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------F 654
             V+FY  V+GF P SE+      +P+  + +GQVV   ++   P ++++ +S      F
Sbjct: 661 AVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIGQVVNVHVLKVDPEAKKLTVSCKDPSVF 720

Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
            +      ++  +K+G +VS +V   + + + V +   G  K  +P  HL D  E+ +  
Sbjct: 721 GLAQQNALKN--LKIGEIVSALVIEKSNDDISVEIQGLGL-KAILPVGHLTDGSENKSRS 777

Query: 715 K-SVIKPGYEFDQLLVLDN-ESSNLL-LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
               I+ G     L VLD  E   L+ L+ K +L+ +AQ   L      +     VHG+V
Sbjct: 778 SFKNIRVGQVLSDLAVLDKLEPKRLIVLTNKPALVKAAQNKTLLRMFDDVKEKKTVHGFV 837

Query: 770 CNIIETGCFVRFLGRLTGFAPRSK 793
            NI  T  FV+F G LTG  P++K
Sbjct: 838 KNITLTAVFVQFGGGLTGLLPKNK 861



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 129/606 (21%), Positives = 241/606 (39%), Gaps = 81/606 (13%)

Query: 123  ANKITLKNISAGMKLWGVVAEVNEKDLVICLPG-GLRGLARAADALDPILDNEIEANEDN 181
            A +  LKN+  G  +  +V E +  D+ + + G GL+ +       D   +N+  ++  N
Sbjct: 723  AQQNALKNLKIGEIVSALVIEKSNDDISVEIQGLGLKAILPVGHLTDGS-ENKSRSSFKN 781

Query: 182  LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS------LETVQEGMV 235
            +      VGQ++S + +    DK E  KR I L+ + +L+    +       + V+E   
Sbjct: 782  I-----RVGQVLSDLAVL---DKLE-PKRLIVLTNKPALVKAAQNKTLLRMFDDVKEKKT 832

Query: 236  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS----GIDVKPGLLLQGVVRSIDRTR 291
            +  +VK+I      + FG    TG LP+N + E +        K    ++  V +ID  +
Sbjct: 833  VHGFVKNITLTAVFVQFG-GGLTGLLPKNKIPEKNLRLPDFGFKKYQTIEVKVLTIDHGQ 891

Query: 292  KVVYLSSDPDTVSKCVTKDLKG--------------ISIDLLVPGMMVSTRVQSILENGV 337
            +   LS    T  K   + L                 SI+ +  G +   RV S+ +  V
Sbjct: 892  RRFLLSMADATSDKKSNEPLAPGANQEAVNPIDETIKSIEDITLGRLTKARVSSVKDTQV 951

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKND----YNQHKKVNARILFVD--------PTSR 385
             +       G +D+    +++     K      ++  + V+ R+L +         P S 
Sbjct: 952  NVQLADNIQGRIDVSQAFDSWSDIKSKKQPLKTFSPKQIVDVRVLGIHDARNHRFLPISH 1011

Query: 386  AVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS-- 443
              G TL   +    A PS  +     D   + ++  G   L  + +  V    +V IS  
Sbjct: 1012 RSGKTL---VFELSAKPSD-QTESAQDPVSLDKIKVGSSWLAFVNNVGVDC-LWVNISPN 1066

Query: 444  --------DVAEEE--VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
                    DV+++   ++ L   +  GS +RV + G   +E     +   S+ +    T 
Sbjct: 1067 VRGRISALDVSDDVSLLKDLAANFPIGSAIRVHVKGV-DVETNRLDLSARSSQDSEALTF 1125

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVKPGKKFKVGAELVFR 552
              +  GM+V GKV  V+    +VQ    + A   L  +  ++    P K  K     + R
Sbjct: 1126 DKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEADPSKYSK---NDIVR 1182

Query: 553  V----LGVKSKRITVTHKKTLVKSKLAI-----LSSYAEATDRLITHGWITKIEKHGCFV 603
            V    + V +KR+ ++ + + V +  A      +SS ++     I  G++  +   G FV
Sbjct: 1183 VCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHVADKGLFV 1242

Query: 604  RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
                 V  +   S+L      +  S + V Q+VK ++         + LS  +KP+ + +
Sbjct: 1243 NLGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLS--LKPSVIDK 1300

Query: 664  DDLVKL 669
            D +  L
Sbjct: 1301 DYVAPL 1306



 Score = 45.4 bits (106), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 22/277 (7%)

Query: 308  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 367
            ++D + ++ D L  GM+V  +V  + E  VM+      +  +++  L + +   +  + Y
Sbjct: 1117 SQDSEALTFDKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEAD-PSKY 1175

Query: 368  NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVR 418
            +++  V   +  +D  ++ V L+     + N +           S +KV DI        
Sbjct: 1176 SKNDIVRVCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHV 1235

Query: 419  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 478
             D+GL + L    T     AYV ISD+++  ++  + +++    V+ ++     +     
Sbjct: 1236 ADKGLFVNLGGNVT-----AYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQ 1290

Query: 479  GILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSE 533
              LK S  +       T +D++   VV GK+  V+ FG  +   G   V  LC    M+E
Sbjct: 1291 LSLKPSVIDKDYVAPLTFNDIQVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAE 1350

Query: 534  FEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 568
              +    K +  G  +   VL + +  KRI+ + K +
Sbjct: 1351 KRVHDVKKLYSEGDAVKAIVLKMDTEKKRISFSMKAS 1387


>gi|414883925|tpg|DAA59939.1| TPA: hypothetical protein ZEAMMB73_130902 [Zea mays]
          Length = 285

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/278 (71%), Positives = 240/278 (86%), Gaps = 3/278 (1%)

Query: 1649 EERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1708
            EER L++D P+TPD+FE+LVRSSPNSSF+WIKYMA +L +ADVEKAR++AERAL+TI  R
Sbjct: 2    EERALQEDIPQTPDDFEKLVRSSPNSSFIWIKYMATLLDLADVEKARAVAERALKTIIPR 61

Query: 1709 EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLA 1768
            EE EKLN+WVAYFNLENEYG+P E+AV KVFQRALQYCDPKK+HLALL +YERTEQ +LA
Sbjct: 62   EEEEKLNVWVAYFNLENEYGSPREDAVKKVFQRALQYCDPKKLHLALLAMYERTEQYELA 121

Query: 1769 DELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAI 1826
            DELL +M K+FK SCK+WL R+Q  LKQ +  E ++A+V RALLSLP  K IKF+SQTAI
Sbjct: 122  DELLDRMTKRFKTSCKIWLCRIQFALKQGKDVEYIKAIVNRALLSLPHRKRIKFLSQTAI 181

Query: 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886
            LEFK GV + GRS FE IL EYPKRTDLWS+YLDQEIRLGDV++IR LFER   L+LPPK
Sbjct: 182  LEFKCGVPEEGRSRFELILREYPKRTDLWSVYLDQEIRLGDVEVIRALFERVTCLTLPPK 241

Query: 1887 KMKFLFKKYLEYEKSVGEE-ERIEYVKQKAMEYVESTL 1923
            KM+FLFKKYL +EKS+G++ ERI+ V+QKA+EYV+S+L
Sbjct: 242  KMQFLFKKYLNFEKSLGKDNERIQLVQQKAIEYVQSSL 279


>gi|302667984|ref|XP_003025570.1| hypothetical protein TRV_00210 [Trichophyton verrucosum HKI 0517]
 gi|291189685|gb|EFE44959.1| hypothetical protein TRV_00210 [Trichophyton verrucosum HKI 0517]
          Length = 1799

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 392/1401 (27%), Positives = 661/1401 (47%), Gaps = 176/1401 (12%)

Query: 610  QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            QGF   S L    +D        Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 481  QGFVHLSRLADGRVDSISSIEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 537

Query: 667  VKL-----GSLVSGVVD--VVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSV 717
             +L     GS+V G ++  ++ P  +   +++   S  G +P  H+AD  L+H    +  
Sbjct: 538  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMADTKLQHP---EKK 594

Query: 718  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 595  FREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 654

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 655  AIVQFYGSVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLVVSCKDPSTV 714

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            + D    Q  F                      E    G V+ G V E +   +++  ++
Sbjct: 715  TAD---YQSAF----------------------ENVHPGLVVSGTVFEKSSDDLLIKLQD 749

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 946
               +    ++H   G+  +  S +             +  V K+ RL++++ K       
Sbjct: 750  SGLIARLTSNHISDGSATKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATL---- 805

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 1005
                  ++A  + R     +D+     V  IV+ I+ E   V  L      I    V D 
Sbjct: 806  ------KEAAAEGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDD 859

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS------ETETSSSKRA---- 1055
            +T + P   +   Q + ATV A+   S   R LL LK +S      ++ ++S K+A    
Sbjct: 860  HTSR-PDFGYSRFQVISATVCAVQEDSD--RFLLSLKPVSKPKQQSDSSSASEKKAPAVV 916

Query: 1056 ---------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 1106
                     K      VG + +A+IT +K  +L +       GRI I+E+ D   ++ + 
Sbjct: 917  LNNPIDEELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDR 976

Query: 1107 L--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1155
                 +F   + +  R++   +  + K         K  ++ELS K S L  SE    L 
Sbjct: 977  KRPLKSFHSKEILPVRVLGIHDARNHKFLPISHRAGKVSVYELSTKRSCLQASEF-KPLH 1035

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             E+  + +G+R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A
Sbjct: 1036 LEQ--LKVGERYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSA 1093

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   V  I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI     
Sbjct: 1094 LQVAVTGIDAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR-- 1142

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
             ++VQI  ++ G V   ++     +D  +  +   F K + L +         V++ + +
Sbjct: 1143 QVLVQINDNVVGAVSLIDM-----ADDYTKVNPTNFHKNEALRVCV-------VDVDIPN 1190

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
                 S   S  LS+ +      +  I++L    IV+G+V+ V + G F+ L   + A +
Sbjct: 1191 KKICFSVRPSKVLSSSLPVVDPEITSIDNLKVGQIVRGFVRRVDNIGVFVTLGHDVTAYI 1250

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1455
             +S+LSD +++  + EF + +LV GR+  V+  + +V++TLK S +   +      L +L
Sbjct: 1251 RVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKVQMTLKKS-ALDPNYKPPFTLKDL 1309

Query: 1456 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
             VG IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y   + VK K+L
Sbjct: 1310 KVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVL 1369

Query: 1515 KVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD--EAIEEVGSYNRSSLLENSSVAVQD 1572
            KVD EK +I+LG+K+SYF++      +  EEESD   + +E G       L+  S +  D
Sbjct: 1370 KVDLEKGQIALGLKASYFRD------LPEEEESDANSSDDEAGGIK----LDVGSDSDDD 1419

Query: 1573 MDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD-------MDNGIS-QNQGHTDEAKT 1624
            + M    GG  +  + +        E    +  PD       + +G      G  D  + 
Sbjct: 1420 VSM----GGVDLEGEDDEEEEEDSDEDIEMENAPDSTKKSGLVTSGFDWTGDGDKDMNEA 1475

Query: 1625 IDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAF 1684
             DE        K K+ R+ EI+      L+ + P+T  ++ERL+   P+SS +W+KYMAF
Sbjct: 1476 ADESTEDDGATKRKKRRKAEIQVDRTGDLDANGPQTVADYERLLLGEPDSSLLWLKYMAF 1535

Query: 1685 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1744
             L + +V+KAR IA+RAL+T++I ++ EKLN+WVA  NLEN +GN  ++ + +VF+ A +
Sbjct: 1536 QLELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLNLENTFGN--DDTLDEVFKSACE 1593

Query: 1745 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA- 1803
            Y D  +++  +  ++ ++ + + ADEL    +KK   S   +       L    E  Q  
Sbjct: 1594 YNDAHEIYDRMTSIFIQSGKAEKADELFQTALKKKVSSTPDFFLNYANFLFDTMEAPQRG 1653

Query: 1804 --VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYL 1859
              ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ L
Sbjct: 1654 RDLLPRALQSLPPHTHVEVTSRFGQLEFRSPNGGIERGRTVFEGLLSSFPKRIDLWNVLL 1713

Query: 1860 DQEIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLFKKYLEYEKSV- 1902
            D EI++GD + +R LFER + +                 L  K+ KFLFKK+L +E+ + 
Sbjct: 1714 DLEIKVGDEEQVRRLFERVLGIGHGVVAADGTKGGPKKKLKEKQAKFLFKKWLAFEEKIA 1773

Query: 1903 --GEEERIEYVKQKAMEYVES 1921
              G+ + ++ VK +A +YV S
Sbjct: 1774 PEGDTKMVDEVKARAADYVRS 1794



 Score =  209 bits (531), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 283/1192 (23%), Positives = 509/1192 (42%), Gaps = 98/1192 (8%)

Query: 189  VGQLVSCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
            VGQ +   V   ++ +DD+K   K+ I LS+       GL+   +     + A V S+ED
Sbjct: 217  VGQYLRAAVTATIRNEDDRKVKNKKHIELSIEPHAANSGLTKADMVVNATVQASVVSVED 276

Query: 246  HGYILHFGLP--SFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDP 300
            HG ++  GL      GF+    L   +G+D   VK G +   +V   + +  V+ LS+D 
Sbjct: 277  HGLVMDLGLEENEAKGFISSRELP--AGVDISTVKEGSVFLCIVTGQNASGTVIKLSADL 334

Query: 301  DTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
             +              +I+  +PG      +  +   G++   +      VD+ H   + 
Sbjct: 335  ASAGSVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVIHSGASD 394

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGL---TLNPYL-------LHNRAPPSHVKVG 408
               +    Y+   K+  R++   P+S  + L    L+  L       L N A      + 
Sbjct: 395  GKKDLTTKYHAGAKIKGRLITTYPSSDPIKLGFSILDSVLKFSPTATLVNGADDDLPSIS 454

Query: 409  DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKEGSCVRV 465
            DI  + KV  VD  LGL + + ST      +V +S +A+   + +  +E  YK GS    
Sbjct: 455  DIIPEVKVTYVDSSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSIEGPYKVGSTHEG 512

Query: 466  RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPG 520
            RI+GF  ++ L    L+    E   F   DV  G VVKGK+    I  +   G IV    
Sbjct: 513  RIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTD 572

Query: 521  GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILS 578
             +  L P  HM++ ++  P KKF+ G ++  RVL V  + +++ +T KK+L+ S  A   
Sbjct: 573  SISGLVPEMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWK 632

Query: 579  SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
             Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQVV  
Sbjct: 633  DYESISAGSRSPGTLIKIQNNGAIVQFYGSVKGFLPVSEMSEAYIKDPSQHFTVGQVVNV 692

Query: 639  RIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
              ++    + R+ +S    P+ V+ D     + V  G +VSG V   + + +++ +   G
Sbjct: 693  HALTVDAENERLVVS-CKDPSTVTADYQSAFENVHPGLVVSGTVFEKSSDDLLIKLQDSG 751

Query: 694  YSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ 750
                 + + H++D      T   + I+ G + D LLV   + S+ L+  + K +L  +A 
Sbjct: 752  LI-ARLTSNHISDGSATKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATLKEAAA 810

Query: 751  Q--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
            +  LP+    I     V G V NII  G FV FL  LTG  P+    D   +     Y  
Sbjct: 811  EGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHTSRPDFGYSR 870

Query: 809  GQSVRSNILDVNSETGRITLSLK-----QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
             Q + + +  V  ++ R  LSLK     +    S+ AS        E+K   +  +    
Sbjct: 871  FQVISATVCAVQEDSDRFLLSLKPVSKPKQQSDSSSAS--------EKKAPAVVLNNPID 922

Query: 864  SELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDVYGFITHHQLAGAT 913
             ELK +E  ++G + + K+    D    VV        +   E  D +  I   +    +
Sbjct: 923  EELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLKS 982

Query: 914  VESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              S  ++   +L +  A+  + + +S +   +  +  +      Q  + K    + L V 
Sbjct: 983  FHSKEILPVRVLGIHDARNHKFLPISHRAGKVSVYELSTKRSCLQASEFKPLHLEQLKVG 1042

Query: 972  QTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALP 1029
            +     V  + E+ L L++ P     +    +S D + +   QK F  G ++   V  + 
Sbjct: 1043 ERYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVTGID 1102

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 1089
            +     RL L  +  S  +T +     K      G ++   +T+I   ++ ++      G
Sbjct: 1103 AEKN--RLDLSARIGSSAKTLTVADLSK------GMILVGRVTKITDRQVLVQINDNVVG 1154

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE 1149
             + + ++ DD + V     +NF   + +   ++   + P+ K  F    S++PS +  S 
Sbjct: 1155 AVSLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKICF----SVRPSKVLSSS 1206

Query: 1150 IG--SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1207
            +      +    ++ +GQ V G+V +VDN    +T+   + A  +I  S    S L+E++
Sbjct: 1207 LPVVDPEITSIDNLKVGQIVRGFVRRVDNIGVFVTLGHDVTA--YIRVSDLSDSFLKEWK 1264

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
              F + + V G +  ++K+   +++ L+      + K      D     +  G IV G++
Sbjct: 1265 DEFQVDQLVQGRLTVVDKDNNKVQMTLKKSALDPNYKPPFTLKD-----LKVGQIVTGKV 1319

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
             K+      + +    +L G  H +E+    V D    Y++   VK KVL++
Sbjct: 1320 RKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKV 1371


>gi|350636490|gb|EHA24850.1| hypothetical protein ASPNIDRAFT_48843 [Aspergillus niger ATCC 1015]
          Length = 1822

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 362/1339 (27%), Positives = 642/1339 (47%), Gaps = 163/1339 (12%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V LG++V G V+  ++  N V  ++  +A G + G +P+ H AD     T ++   K  +
Sbjct: 559  VTLGAVVKGKVEKLLIGANGVDGLIVALADGIT-GLVPSMHFAD-----TPLQFPEKKFH 612

Query: 723  E----FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            E      ++L ++ E   + L+ K SL+NS   +  D   I P +   G +  I   G  
Sbjct: 613  EGMTVSTRILSVNLEKRQIRLTLKKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAV 672

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            V+F G + GF P S+  +    D S+ + +GQ V  + L V++   ++ +S K       
Sbjct: 673  VQFYGPIRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDASREKLAVSCK------- 725

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
            D     E +                   K  E    G ++ G V E +    ++  +++ 
Sbjct: 726  DPETFTEAYR------------------KAFENIHPGMLVSGTVFEKSADDTLLKLDDYG 767

Query: 899  DVYGFITHHQLAGATVESGSVI----------QAAILDVAKAERLVDLSLKTVFIDRFRE 948
             V      H   G+  +  S +          +  ++D+ +A RL+ ++           
Sbjct: 768  LVARLNVEHVADGSPSKQASTLSKIRVGQKLNELMVIDIQRAHRLIKVT----------- 816

Query: 949  ANSNRQAQKKKRKREAS----KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS--- 1001
                RQ+ KK  K  +     +DL     V   +  +  N + +        IG      
Sbjct: 817  ---GRQSLKKAAKHGSIPSKIEDLKEGADVTGFIRNITMNGVFVEF--LGGVIGLVPKRL 871

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSST-AGRLLLLLKAISETE 1048
            V D N  K P      GQ V ATV ++            P+ +T AG           T 
Sbjct: 872  VGDENVNK-PDYGMARGQVVTATVHSVDADFQRFILSMNPAEATHAGAKKKAAAKPEPTP 930

Query: 1049 TSSS------KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 1102
            T  +      +  K  S +  G + + +I  ++  ++ ++      GRI ++EV D   +
Sbjct: 931  TDDAVANAIDEGIKSMSDFTFGRVTKCKIVSVRATQVNVQLADNIQGRIDVSEVFDKWED 990

Query: 1103 VVE--NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIG 1151
            + +       F+  Q ++ARI+   +  + K         K  ++ELS+KPS L  +   
Sbjct: 991  IKDRKQPLRFFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAAN-P 1049

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
            S L  E+  V +G    G+V  V ++   + +S +++ +L ++D++ + S L + ++ + 
Sbjct: 1050 SPLNLEQ--VQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASDDLSLLADVEKHYP 1107

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +G A+  HV +++ +K  L L  +   D +  + V +           G I+ GR++K+ 
Sbjct: 1108 VGSAMKVHVSAVDADKGRLDLSAKQRSDKLVFEDVSV-----------GMILPGRVTKVT 1156

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
                 +++Q+   + G V   ++ +       +   + + ++  V+ I +  +    + L
Sbjct: 1157 ER--QVIMQLSKSIVGAVDLIDMADDYTKANPTVCQKNEVLRACVIAIDKANK---KISL 1211

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
            SLR S           LS+ +    K +  I+ L  N IV+G+V+ V   G F+ + R +
Sbjct: 1212 SLRPS---------KVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGRDV 1262

Query: 1392 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1451
             A V +S+LSD Y++  +  F + +LV GRV   +    +++++LK S      ++ +  
Sbjct: 1263 TAYVRISDLSDSYLKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLT- 1321

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
            L +L  G +V G++++VE +G FI I+ + N+ GLCH SE++E+ V++  T+Y  G+ VK
Sbjct: 1322 LHDLKPGQVVTGKVRKVEEFGAFIVIDGSKNISGLCHRSEMAENRVEDARTLYEEGDAVK 1381

Query: 1511 VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN-RSSLLENSSVA 1569
             KILK+D+++ +IS G+K+SYF  + D      ++    +++ +G  +   S  E S V+
Sbjct: 1382 AKILKIDRKQEKISFGLKASYFDEEEDEDSEEDDDSEGISLDGLGGVDVEGSDDEESDVS 1441

Query: 1570 VQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKT-IDEK 1628
            +  +D+E +       +  E     P      D          S N    DEA    D  
Sbjct: 1442 MGGVDLEDDSDDESEQSDDEEMTDAPAKASRQDGGLGAGGFDWSGNNQDDDEAGARSDSD 1501

Query: 1629 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1688
            +   ++ K+K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L +
Sbjct: 1502 DEEDSRPKKKKNRKPEIQVDRTGDLDANGPQSVADYERLLLGEPDSSLLWLQYMAFQLEL 1561

Query: 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748
             +VEKAR IAERAL+TI I ++ EKLNIWVA  NLEN YGN  ++ +  VF+RA QY D 
Sbjct: 1562 GEVEKAREIAERALRTITIGQDAEKLNIWVAMLNLENTYGN--DDTLEDVFKRACQYNDT 1619

Query: 1749 KKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVV 1805
            ++V+   + +Y ++ +N+ AD+L    + KK   S K ++     L       E  +A++
Sbjct: 1620 QEVYERTISIYIQSGKNEKADDLFQTALKKKVFGSPKFFINYASFLFDTMAAPERARALL 1679

Query: 1806 QRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863
             RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PK+ DLW+I LD EI
Sbjct: 1680 PRALQSLPSHTHVELTSKFGQLEFRSANGDIERGRTVFEGLLSSFPKKIDLWNILLDLEI 1739

Query: 1864 RLGDVDLIRGLFERAISL----------------SLPPKKMKFLFKKYLEYEKSV----- 1902
            + GD + +R LFER + +                 + PK+ KF FKK+L +E+ +     
Sbjct: 1740 KNGDAEQVRRLFERVLGIRDTKKGGAAAAVEASKKVRPKQAKFFFKKWLSFEEKLASAEG 1799

Query: 1903 GEEERIEYVKQKAMEYVES 1921
            G ++ +E +K KA EYV+S
Sbjct: 1800 GNDKMVEEIKAKAAEYVKS 1818



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 216/872 (24%), Positives = 370/872 (42%), Gaps = 78/872 (8%)

Query: 29  NSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEA----VE 82
           NSK   N A +A +L++  DD+ P FPRGGG  LT  ER +I   A  D  FE       
Sbjct: 45  NSKPDANSAPKASELSVLRDDE-PSFPRGGGSVLTPLERKQIQIQATKDVLFEQKGSKPS 103

Query: 83  RGLHKKNKKKKKKTERKANETVDDLGSLFG------------DGISGKLPRYANKITLKN 130
            G    +  +    E   ++T                     D    K  R    +  K 
Sbjct: 104 AGDFGDDGMEDTDMEDAGDDTKSAAAKKSRKKKTKGKKDAEKDATEKKDVRIEG-LNFKR 162

Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE-------------- 176
           I  G  + G V+ +N  D+ + LP  L G      ++  +L+ +IE              
Sbjct: 163 IVPGTMVLGQVSSINAHDIGLSLPNNLTGYVPLT-SVSKVLEEKIEKILKDDGSDEEEDD 221

Query: 177 -ANEDNLLPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQE 232
             ++   L   F++GQ +   V+       D     +++I LS+       GLS   +  
Sbjct: 222 DEDDSLDLHKYFYLGQYLRAYVVSAGSNAADASAKSRKRIELSVDPRQANSGLSKSDLVV 281

Query: 233 GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSIDR 289
              + A V S+EDHG ++  GL      GF+    +  +     +K G +   +V   + 
Sbjct: 282 NSAVQASVVSVEDHGLVMDLGLEGGEVKGFMSSKEVDPKTQPSSIKEGSVFLCMVTGQNA 341

Query: 290 TRKVVYLSSD-PDTVSKCVTKDLK-GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
              V+ LS++ P   S   +  L    +I   +PG      +  +   G+    +     
Sbjct: 342 NGSVIKLSANLPSAGSIKKSHYLSTAPTITSFLPGTAAEILLTDVSSTGMAGKIMGMLDA 401

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYL--LHNRAPPS 403
           TVD+     +    +    Y+   K+  R++   P++    VG +L  ++        P 
Sbjct: 402 TVDLVQSGGSSGKDDLTKKYSTGAKIKGRLVCTFPSAEPYKVGFSLLDHVAKFATEGGPG 461

Query: 404 HV----KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--- 456
                  +  I  ++KVV+V+ GLG+ + I ST      +V +S +++ +V  +  +   
Sbjct: 462 SSDDAPAISAIVPEAKVVKVEPGLGVYVQIGST--KHLGFVHVSRLSDGQVETISPELGP 519

Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF 512
           ++  S    R++G+  ++ L     +    +       DV  G VVKGKV    I  +  
Sbjct: 520 FRVDSVHEGRVVGYSAIDNLYLLSFEKKVIDQPFLRVEDVTLGAVVKGKVEKLLIGANGV 579

Query: 513 -GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 569
            G IV    G+  L P  H ++  +  P KKF  G  +  R+L V  + ++I +T KK+L
Sbjct: 580 DGLIVALADGITGLVPSMHFADTPLQFPEKKFHEGMTVSTRILSVNLEKRQIRLTLKKSL 639

Query: 570 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
           + S+ AI   Y E T    + G I KI+ HG  V+FY  ++GF P SE+      +PS  
Sbjct: 640 LNSESAIWKDYEEITPGTQSPGTIIKIQPHGAVVQFYGPIRGFLPVSEMSEAYIKDPSQH 699

Query: 630 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNA 684
           + +GQVV    + S+ ASR         P   +E      + +  G LVSG V   + + 
Sbjct: 700 FRLGQVVNVHAL-SVDASREKLAVSCKDPETFTEAYRKAFENIHPGMLVSGTVFEKSADD 758

Query: 685 VVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--S 740
            ++ +   G     +  EH+AD    + A+ + S I+ G + ++L+V+D + ++ L+  +
Sbjct: 759 TLLKLDDYGLV-ARLNVEHVADGSPSKQASTL-SKIRVGQKLNELMVIDIQRAHRLIKVT 816

Query: 741 AKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
            + SL  +A+   +PS    +   + V G++ NI   G FV FLG + G  P+    D  
Sbjct: 817 GRQSLKKAAKHGSIPSKIEDLKEGADVTGFIRNITMNGVFVEFLGGVIGLVPKRLVGDEN 876

Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
                     GQ V + +  V+++  R  LS+
Sbjct: 877 VNKPDYGMARGQVVTATVHSVDADFQRFILSM 908



 Score = 67.4 bits (163), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 178/410 (43%), Gaps = 53/410 (12%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1000 FFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1059

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  ++  V +
Sbjct: 1060 GSTWVGFVNNVADDCLWINLS-PNVRGRLRLMDASDDLSLLADVEKHYPVGSAMKVHVSA 1118

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+   +  K V +D   +S+ +++PG     RV  + E  V++       
Sbjct: 1119 VDADKGRLDLSAKQRS-DKLVFED---VSVGMILPG-----RVTKVTERQVIMQLSKSIV 1169

Query: 347  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
            G VD+  + + +    PT   KN+      + A ++ +D  ++ + L+L P  + + + P
Sbjct: 1170 GAVDLIDMADDYTKANPTVCQKNEV-----LRACVIAIDKANKKISLSLRPSKVLSSSLP 1224

Query: 403  SHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
               K      Q KV  + RG        GL + +        AYV ISD+++  +++ + 
Sbjct: 1225 VQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGR---DVTAYVRISDLSDSYLKEWKD 1281

Query: 456  KYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSF 512
             ++    V+ R+      +G     LK S  +       T  D+KPG VV GKV  V+ F
Sbjct: 1282 SFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVVTGKVRKVEEF 1341

Query: 513  GAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            GA +   G   +  LC    M+E  +      ++ G  +  ++L +  K+
Sbjct: 1342 GAFIVIDGSKNISGLCHRSEMAENRVEDARTLYEEGDAVKAKILKIDRKQ 1391



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 156/373 (41%), Gaps = 33/373 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            + L+ +  G    G V  V +  L I L   +RG  R  DA D   D  + A+ +   P 
Sbjct: 1052 LNLEQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASD---DLSLLADVEKHYP- 1107

Query: 186  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
               VG  +   V  +D DK         L L        L  E V  GM+L   V  + +
Sbjct: 1108 ---VGSAMKVHVSAVDADKGR-------LDLSAKQRSDKLVFEDVSVGMILPGRVTKVTE 1157

Query: 246  HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDP 300
               I+     S  G +   ++A++      P +     +L+  V +ID+  K + LS  P
Sbjct: 1158 RQVIMQLS-KSIVGAVDLIDMADDY-TKANPTVCQKNEVLRACVIAIDKANKKISLSLRP 1215

Query: 301  DTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              V  S    +D +  SI  L    +V   V+ + +NG+ ++     T  V I  L +++
Sbjct: 1216 SKVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGRDVTAYVRISDLSDSY 1275

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQS 414
                WK+ +   + V  R+   D     + ++L   +L  + +AP +   +K G +    
Sbjct: 1276 -LKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVV-TG 1333

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHL 473
            KV +V+     ++   S  +S   +   S++AE  V      Y+EG  V+ +IL   R  
Sbjct: 1334 KVRKVEEFGAFIVIDGSKNISGLCHR--SEMAENRVEDARTLYEEGDAVKAKILKIDRKQ 1391

Query: 474  EGLATGILKASAF 486
            E ++ G LKAS F
Sbjct: 1392 EKISFG-LKASYF 1403


>gi|145251307|ref|XP_001397167.1| rRNA biogenesis protein RRP5 [Aspergillus niger CBS 513.88]
 gi|134082698|emb|CAK42591.1| unnamed protein product [Aspergillus niger]
          Length = 1822

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 362/1339 (27%), Positives = 642/1339 (47%), Gaps = 163/1339 (12%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            V LG++V G V+  ++  N V  ++  +A G + G +P+ H AD     T ++   K  +
Sbjct: 559  VTLGAVVKGKVEKLLIGANGVDGLIVALADGIT-GLVPSMHFAD-----TPLQFPEKKFH 612

Query: 723  E----FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            E      ++L ++ E   + L+ K SL+NS   +  D   I P +   G +  I   G  
Sbjct: 613  EGMTVSTRILSVNLEKRQIRLTLKKSLLNSESAIWKDYEEITPGTQSPGTIIKIQPHGAV 672

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            V+F G + GF P S+  +    D S+ + +GQ V  + L V++   ++ +S K       
Sbjct: 673  VQFYGPIRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDASREKLAVSCK------- 725

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
            D     E +                   K  E    G ++ G V E +    ++  +++ 
Sbjct: 726  DPETFTEAYR------------------KAFENIHPGMLVSGTVFEKSADDTLLKLDDYG 767

Query: 899  DVYGFITHHQLAGATVESGSVI----------QAAILDVAKAERLVDLSLKTVFIDRFRE 948
             V      H   G+  +  S +          +  ++D+ +A RL+ ++           
Sbjct: 768  LVARLNVEHVADGSPSKQASTLSKIRVGQKLNELMVIDIQRAHRLIKVT----------- 816

Query: 949  ANSNRQAQKKKRKREAS----KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS--- 1001
                RQ+ KK  K  +     +DL     V   +  +  N + +        IG      
Sbjct: 817  ---GRQSLKKAAKHGSIPSEIEDLKEGADVTGFIRNITMNGVFVEF--LGGVIGLVPKRL 871

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSST-AGRLLLLLKAISETE 1048
            V D N  K P      GQ V ATV ++            P+ +T AG           T 
Sbjct: 872  VGDENVNK-PDYGMARGQVVTATVHSVDADFQRFILSMNPAEATHAGAKKKAAAKPEPTP 930

Query: 1049 TSSS------KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 1102
            T  +      +  K  S +  G + + +I  ++  ++ ++      GRI ++EV D   +
Sbjct: 931  TDDAVANAIDEGIKSMSDFTFGRVTKCKIVSVRATQVNVQLADNIQGRIDVSEVFDKWED 990

Query: 1103 VVE--NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIG 1151
            + +       F+  Q ++ARI+   +  + K         K  ++ELS+KPS L  +   
Sbjct: 991  IKDRKQPLRFFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAAN-P 1049

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
            S L  E+  V +G    G+V  V ++   + +S +++ +L ++D++ + S L + ++ + 
Sbjct: 1050 SPLNLEQ--VQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASDDLSLLADVEKHYP 1107

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +G A+  HV +++ +K  L L  +   D +  + V +           G I+ GR++K+ 
Sbjct: 1108 VGSAMKVHVSAVDADKGRLDLSAKQRSDKLVFEDVSV-----------GMILPGRVTKVT 1156

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
                 +++Q+   + G V   ++ +       +   + + ++  V+ I +  +    + L
Sbjct: 1157 ER--QVIMQLSKSIVGAVDLIDMADDYTKANPTVCQKNEVLRACVIAIDKANK---KISL 1211

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
            SLR S           LS+ +    K +  I+ L  N IV+G+V+ V   G F+ + R +
Sbjct: 1212 SLRPS---------KVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGRDV 1262

Query: 1392 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1451
             A V +S+LSD Y++  +  F + +LV GRV   +    +++++LK S      ++ +  
Sbjct: 1263 TAYVRISDLSDSYLKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLT- 1321

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
            L +L  G +V G++++VE +G FI I+ + N+ GLCH SE++E+ V++  T+Y  G+ VK
Sbjct: 1322 LHDLKPGQVVTGKVRKVEEFGAFIVIDGSKNISGLCHRSEMAENRVEDARTLYEEGDAVK 1381

Query: 1511 VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN-RSSLLENSSVA 1569
             KILK+D+++ +IS G+K+SYF  + D      ++    +++ +G  +   S  E S V+
Sbjct: 1382 AKILKIDRKQEKISFGLKASYFDEEEDEDSEEDDDSEGISLDGLGGVDVEGSDDEESDVS 1441

Query: 1570 VQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKT-IDEK 1628
            +  +D+E +       +  E     P      D          S N    DEA    D  
Sbjct: 1442 MGGVDLEDDSDDESEQSDDEEMTDAPAKASRQDGGLGAGGFDWSGNNQDDDEAGARSDSD 1501

Query: 1629 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1688
            +   ++ K+K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L +
Sbjct: 1502 DEEDSRPKKKKNRKPEIQVDRTGDLDANGPQSVADYERLLLGEPDSSLLWLQYMAFQLEL 1561

Query: 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748
             +VEKAR IAERAL+TI I ++ EKLNIWVA  NLEN YGN  ++ +  VF+RA QY D 
Sbjct: 1562 GEVEKAREIAERALRTITIGQDAEKLNIWVAMLNLENTYGN--DDTLEDVFKRACQYNDT 1619

Query: 1749 KKVHLALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVV 1805
            ++V+   + +Y ++ +N+ AD+L    + KK   S K ++     L       E  +A++
Sbjct: 1620 QEVYERTISIYIQSGKNEKADDLFQTALKKKVFGSPKFFINYASFLFDTMAAPERARALL 1679

Query: 1806 QRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863
             RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PK+ DLW+I LD EI
Sbjct: 1680 PRALQSLPSHTHVELTSKFGQLEFRSANGDIERGRTVFEGLLSSFPKKIDLWNILLDLEI 1739

Query: 1864 RLGDVDLIRGLFERAISL----------------SLPPKKMKFLFKKYLEYEKSV----- 1902
            + GD + +R LFER + +                 + PK+ KF FKK+L +E+ +     
Sbjct: 1740 KNGDAEQVRRLFERVLGIRDTKKGGAAAAVEASKKVRPKQAKFFFKKWLSFEEKLASAEG 1799

Query: 1903 GEEERIEYVKQKAMEYVES 1921
            G ++ +E +K KA EYV+S
Sbjct: 1800 GNDKMVEEIKAKAAEYVKS 1818



 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 216/872 (24%), Positives = 371/872 (42%), Gaps = 78/872 (8%)

Query: 29  NSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEA----VE 82
           NSK   N A +A +L++  DD+ P FPRGGG  LT  ER +I   A  D  FE       
Sbjct: 45  NSKPDANSAPKASELSVLRDDE-PSFPRGGGSVLTPLERKQIQIQATKDVLFEQKGSKPS 103

Query: 83  RGLHKKNKKKKKKTERKANETVDDLGSLFG------------DGISGKLPRYANKITLKN 130
            G    +  +    E   ++T                     D    K  R    +  K 
Sbjct: 104 AGDFGDDGMEDTDMEDAGDDTKSAAAKKSRKKKTKGKKDAEKDATEKKDVRIEG-LNFKR 162

Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE-------------- 176
           I  G  + G V+ +N  D+ + LP  L G      ++  +L+ +IE              
Sbjct: 163 IVPGTMVLGQVSSINAHDIGLSLPNNLTGYVPLT-SVSKVLEEKIEKILKDDGSDEEEDD 221

Query: 177 -ANEDNLLPTIFHVGQLVSCIVLQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQE 232
             ++   L   F++GQ +   V+       D     +++I LS+       GLS   +  
Sbjct: 222 DEDDSLDLHKYFYLGQYLRAYVVSAGSNAADASAKSRKRIELSVDPRQANSGLSKSDLVV 281

Query: 233 GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL-AENSGIDVKPGLLLQGVVRSIDR 289
              + A V S+EDHG ++  GL      GF+    +  +     +K G +   +V   + 
Sbjct: 282 NSAVQASVVSVEDHGLVMDLGLEGGEVKGFMSSKEVDPKTQPSSIKEGSVFLCMVTGQNA 341

Query: 290 TRKVVYLSSD-PDTVSKCVTKDLK-GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
              V+ LS++ P   S   +  L    +I   +PG      +  +   G+    +     
Sbjct: 342 NGSVIKLSANLPSAGSIKKSHYLSTAPTITSFLPGTAAEILLTDVSSTGMAGKIMGMLDA 401

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYL--LHNRAPPS 403
           TVD+     +    +    Y+   K+  R++   P++    VG +L  ++        P 
Sbjct: 402 TVDLVQSGGSSGKDDLTKKYSTGAKIKGRLVCTFPSAEPYKVGFSLLDHVAKFATEGGPG 461

Query: 404 HV----KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--- 456
                  +  I  ++KVV+V+ GLG+ + I ST      +V +S +++ +V  +  +   
Sbjct: 462 SSDDAPAISAIVPEAKVVKVEPGLGVYVQIGST--KHLGFVHVSRLSDGQVETISPELGP 519

Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF 512
           ++  S    R++G+  ++ L     +    +       DV  G VVKGKV    I  +  
Sbjct: 520 FRVDSVHEGRVVGYSAIDNLYLLSFEKKVIDQPFLRVEDVTLGAVVKGKVEKLLIGANGV 579

Query: 513 -GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 569
            G IV    G+  L P  H ++  +  P KKF  G  +  R+L V  + ++I +T KK+L
Sbjct: 580 DGLIVALADGITGLVPSMHFADTPLQFPEKKFHEGMTVSTRILSVNLEKRQIRLTLKKSL 639

Query: 570 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
           + S+ AI   Y E T    + G I KI+ HG  V+FY  ++GF P SE+      +PS  
Sbjct: 640 LNSESAIWKDYEEITPGTQSPGTIIKIQPHGAVVQFYGPIRGFLPVSEMSEAYIKDPSQH 699

Query: 630 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNA 684
           + +GQVV    + S+ ASR         P   +E      + +  G LVSG V   + + 
Sbjct: 700 FRLGQVVNVHAL-SVDASREKLAVSCKDPETFTEAYRKAFENIHPGMLVSGTVFEKSADD 758

Query: 685 VVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--S 740
            ++ +   G     +  EH+AD    + A+ + S I+ G + ++L+V+D + ++ L+  +
Sbjct: 759 TLLKLDDYGLV-ARLNVEHVADGSPSKQASTL-SKIRVGQKLNELMVIDIQRAHRLIKVT 816

Query: 741 AKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
            + SL  +A+   +PS+   +   + V G++ NI   G FV FLG + G  P+    D  
Sbjct: 817 GRQSLKKAAKHGSIPSEIEDLKEGADVTGFIRNITMNGVFVEFLGGVIGLVPKRLVGDEN 876

Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
                     GQ V + +  V+++  R  LS+
Sbjct: 877 VNKPDYGMARGQVVTATVHSVDADFQRFILSM 908



 Score = 67.4 bits (163), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 178/410 (43%), Gaps = 53/410 (12%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   Q++S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1000 FFRPKQIISARILGIHDARNHKFLPISHRSGKFPVFELSVKPSFLQAANPSPLNLEQVQV 1059

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     +V ++ D    ++   P+  G L   + +++  +  DV+     G  ++  V +
Sbjct: 1060 GSTWVGFVNNVADDCLWINLS-PNVRGRLRLMDASDDLSLLADVEKHYPVGSAMKVHVSA 1118

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+   +  K V +D   +S+ +++PG     RV  + E  V++       
Sbjct: 1119 VDADKGRLDLSAKQRS-DKLVFED---VSVGMILPG-----RVTKVTERQVIMQLSKSIV 1169

Query: 347  GTVDIFHLQNTF----PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
            G VD+  + + +    PT   KN+      + A ++ +D  ++ + L+L P  + + + P
Sbjct: 1170 GAVDLIDMADDYTKANPTVCQKNEV-----LRACVIAIDKANKKISLSLRPSKVLSSSLP 1224

Query: 403  SHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
               K      Q KV  + RG        GL + +        AYV ISD+++  +++ + 
Sbjct: 1225 VQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGR---DVTAYVRISDLSDSYLKEWKD 1281

Query: 456  KYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSF 512
             ++    V+ R+      +G     LK S  +       T  D+KPG VV GKV  V+ F
Sbjct: 1282 SFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVVTGKVRKVEEF 1341

Query: 513  GAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            GA +   G   +  LC    M+E  +      ++ G  +  ++L +  K+
Sbjct: 1342 GAFIVIDGSKNISGLCHRSEMAENRVEDARTLYEEGDAVKAKILKIDRKQ 1391



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 156/373 (41%), Gaps = 33/373 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
            + L+ +  G    G V  V +  L I L   +RG  R  DA D   D  + A+ +   P 
Sbjct: 1052 LNLEQVQVGSTWVGFVNNVADDCLWINLSPNVRGRLRLMDASD---DLSLLADVEKHYP- 1107

Query: 186  IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
               VG  +   V  +D DK         L L        L  E V  GM+L   V  + +
Sbjct: 1108 ---VGSAMKVHVSAVDADKGR-------LDLSAKQRSDKLVFEDVSVGMILPGRVTKVTE 1157

Query: 246  HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSDP 300
               I+     S  G +   ++A++      P +     +L+  V +ID+  K + LS  P
Sbjct: 1158 RQVIMQLS-KSIVGAVDLIDMADDY-TKANPTVCQKNEVLRACVIAIDKANKKISLSLRP 1215

Query: 301  DTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              V  S    +D +  SI  L    +V   V+ + +NG+ ++     T  V I  L +++
Sbjct: 1216 SKVLSSSLPVQDKEITSIKQLKVNDIVRGFVRRVADNGLFVTVGRDVTAYVRISDLSDSY 1275

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQS 414
                WK+ +   + V  R+   D     + ++L   +L  + +AP +   +K G +    
Sbjct: 1276 -LKEWKDSFQVDQLVKGRVTVSDSEQGKLQMSLKESVLDPNYKAPLTLHDLKPGQVV-TG 1333

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHL 473
            KV +V+     ++   S  +S   +   S++AE  V      Y+EG  V+ +IL   R  
Sbjct: 1334 KVRKVEEFGAFIVIDGSKNISGLCHR--SEMAENRVEDARTLYEEGDAVKAKILKIDRKQ 1391

Query: 474  EGLATGILKASAF 486
            E ++ G LKAS F
Sbjct: 1392 EKISFG-LKASYF 1403


>gi|302505220|ref|XP_003014831.1| hypothetical protein ARB_07392 [Arthroderma benhamiae CBS 112371]
 gi|291178137|gb|EFE33928.1| hypothetical protein ARB_07392 [Arthroderma benhamiae CBS 112371]
          Length = 1820

 Score =  411 bits (1057), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 389/1401 (27%), Positives = 660/1401 (47%), Gaps = 176/1401 (12%)

Query: 610  QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            QGF   S L    +D        Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 502  QGFVHLSRLADGRVDSISSIEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 558

Query: 667  VKL-----GSLVSGVVD--VVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSV 717
             +L     GS+V G ++  ++ P  +   +++   S  G +P  H+AD  L+H    +  
Sbjct: 559  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMADTKLQHP---EKK 615

Query: 718  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 616  FREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 675

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 676  AIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNIHALTVDAENERLVVSCKDPSTV 735

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            + D    Q  F                      E    G V+ G V E +   +++  ++
Sbjct: 736  TAD---YQSAF----------------------ENVHPGLVVSGTVFEKSSDDLLIKLQD 770

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 946
               +    + H   G++ +  S +             +  V K+ RL++++ K       
Sbjct: 771  SGLIARLTSDHISDGSSTKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATL---- 826

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 1005
                  ++A  + R     +D+     V  IV+ I+ E   V  L      I    V D 
Sbjct: 827  ------KEAAAEGRLPAKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDD 880

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS------ETETSSSKRA---- 1055
            +  + P   +   Q + ATV A+   S   R LL LK +S      ++ ++S K+A    
Sbjct: 881  HASR-PDFGYSRFQVISATVCAVQEDSD--RFLLSLKPVSKLKQQSDSSSASEKKAPAVV 937

Query: 1056 ---------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 1106
                     K      VG + +A+IT +K  +L +       GRI I+E+ D   ++ + 
Sbjct: 938  LNNPIDEELKAMEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDR 997

Query: 1107 --LFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1155
                 +F     +  R++   +  + K         K  ++ELS K S L  SE    L 
Sbjct: 998  KRPLKSFHSKAILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEF-KPLH 1056

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             E+  + +G R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A
Sbjct: 1057 LEQ--LKVGDRYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSA 1114

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   V  I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI     
Sbjct: 1115 LQVAVTGIDVEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR-- 1163

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
             ++VQI  ++ G +   ++     +D  +  +   F K + L +         V++ + +
Sbjct: 1164 QVLVQINDNVVGAISLIDM-----ADDYTKVNPTNFHKNEALRVCV-------VDVDIPN 1211

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
                 S   S  LS+ +      +  I++L    IV+G+V+ V + G F+ L   + A +
Sbjct: 1212 KKISFSVRPSKVLSSSLAVVDPEITSIDNLKVGQIVRGFVRRVDNIGVFVTLGHDVTAYI 1271

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1455
             +S+LSD +++  + EF + +LV GR+  V+  + +++++LK S +   +     NL +L
Sbjct: 1272 RVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKIQMSLKKS-ALDPNYKPPFNLKDL 1330

Query: 1456 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
             +G IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y   + VK K+L
Sbjct: 1331 KIGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVL 1390

Query: 1515 KVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD--EAIEEVGSYNRSSLLENSSVAVQD 1572
            KVD EK +I+LG+K+SYF++      +  EEESD   + +E G       L+  S +  D
Sbjct: 1391 KVDLEKGQIALGLKASYFRD------LPEEEESDANSSDDEAGGIK----LDVGSDSDDD 1440

Query: 1573 MDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD-------MDNGIS-QNQGHTDEAKT 1624
            + M    GG  +  + +        E    +  PD       + +G      G  D  +T
Sbjct: 1441 VSM----GGVDLEGEDDKEEEEDSDEDIEMENAPDSTKKGGLVTSGFDWTGDGDKDMNET 1496

Query: 1625 IDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAF 1684
             DE        K K+ R+ EI+      L+ + P+T  ++ERL+   P+SS +W+KYMAF
Sbjct: 1497 ADESTEDDGATKRKKRRKAEIQVDRTGDLDANGPQTVADYERLLLGEPDSSLLWLKYMAF 1556

Query: 1685 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1744
             L + +V+KAR IA+RAL+T++I ++ EKLN+WVA  NLEN +GN  ++ + +VF+ A +
Sbjct: 1557 QLELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLNLENTFGN--DDTLDEVFKSACE 1614

Query: 1745 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA- 1803
            Y D  +++  ++ ++ ++ + + ADEL    +KK   S   +       L    E  Q  
Sbjct: 1615 YNDAHEIYDRMISIFIQSGKAEKADELFQTALKKKVSSTPDFFLNYANFLFDTMEAPQRG 1674

Query: 1804 --VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYL 1859
              ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ L
Sbjct: 1675 RDLLPRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERGRTVFEGLLSSFPKRIDLWNVLL 1734

Query: 1860 DQEIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLFKKYLEYEKSV- 1902
            D EI++GD + +R LFER + +                 L  K+ KFLFKK+L +E+ + 
Sbjct: 1735 DLEIKVGDEEQVRRLFERVLGIGHGVVAADGTKGGPKKKLKEKQAKFLFKKWLAFEEKIA 1794

Query: 1903 --GEEERIEYVKQKAMEYVES 1921
              G+   ++ VK +A +YV S
Sbjct: 1795 PEGDTRMVDEVKARAADYVRS 1815



 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 329/1377 (23%), Positives = 579/1377 (42%), Gaps = 164/1377 (11%)

Query: 49   DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            D+ P FPRGG + LT  ER +I   A  D  FE          +K K   E   +E    
Sbjct: 74   DEQPAFPRGGNNVLTPLERKQIQIQATKDVLFE----------QKGKNGAEFANSEDEGS 123

Query: 107  LGSLFGDGISG--------------KLPRYANK------ITLKNISAGMKLWGVVAEVNE 146
            LG++     +G              + P  A +      +T K I+ G ++ G V+ +  
Sbjct: 124  LGAVEDKKDAGTKSKKRKAKASKTKEAPAAAKQGVKVESLTYKRIAVGSRILGQVSSIGL 183

Query: 147  KDLVICLPGGLRGLARAADALDPILDNEIEA-------------NEDNLLPTIFHVGQLV 193
             D+ + LP  L G     +A+   L  ++EA             ++D  L     VGQ +
Sbjct: 184  HDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEEDEDDDLELKNYVRVGQYL 242

Query: 194  SCIV---LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
               V   ++ +DD+K   K+ I LS+       GL+   +     + A V S+EDHG ++
Sbjct: 243  RAAVTATIRNEDDRKVKNKKHIELSIEPHAANSGLTKADMVVNATVQASVISVEDHGLVM 302

Query: 251  HFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
              GL      GF+    L   +G+D   VK G +   +V   + +  V+ LS+D  +   
Sbjct: 303  DLGLEDNEAKGFISSRELP--AGVDISTVKEGSVFLCIVTGQNASGTVIKLSADLPSAGS 360

Query: 306  CVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 363
                       +I+  +PG      +  +   G++   +      VD+ H   +    + 
Sbjct: 361  VKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVIHSGASDGKKDL 420

Query: 364  KNDYNQHKKVNARILFVDPTSRAVGL---TLNPYL-------LHNRAPPSHVKVGDIYDQ 413
               Y+   K+  R++   P+S  V L    L+  L       L N A      + DI  +
Sbjct: 421  TTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGADDDLPSISDIIPE 480

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKEGSCVRVRILGF 470
             KV  VD  LGL + + ST      +V +S +A+   + +  +E  YK GS    RI+GF
Sbjct: 481  VKVTYVDSSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSIEGPYKVGSTHEGRIIGF 538

Query: 471  RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKAL 525
              ++ L    L+    E   F   DV  G VVKGK+    I  +   G IV     +  L
Sbjct: 539  SAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGL 598

Query: 526  CPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEA 583
             P  HM++ ++  P KKF+ G ++  RVL V  + +++ +T KK+L+ S  A    Y   
Sbjct: 599  VPEMHMADTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESI 658

Query: 584  TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQVV    ++ 
Sbjct: 659  SAGSRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNIHALTV 718

Query: 644  IPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 698
               + R+ +S    P+ V+ D     + V  G +VSG V   + + +++ +   G     
Sbjct: 719  DAENERLVVS-CKDPSTVTADYQSAFENVHPGLVVSGTVFEKSSDDLLIKLQDSGLI-AR 776

Query: 699  IPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LP 753
            + ++H++D      T   + I+ G + D LLV   + S+ L+  + K +L  +A +  LP
Sbjct: 777  LTSDHISDGSSTKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATLKEAAAEGRLP 836

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            +    I     V G V NII  G FV FL  LTG  P+    D   +     Y   Q + 
Sbjct: 837  AKFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHASRPDFGYSRFQVIS 896

Query: 814  SNILDVNSETGRITLSLK-----QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
            + +  V  ++ R  LSLK     +    S+ AS        E+K   +  +     ELK 
Sbjct: 897  ATVCAVQEDSDRFLLSLKPVSKLKQQSDSSSAS--------EKKAPAVVLNNPIDEELKA 948

Query: 869  VEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDVYGFITHHQLAGATVESGS 918
            +E  ++G + + K+    D    VV        +   E  D +  I   +    +  S +
Sbjct: 949  MEDIVVGKITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLKSFHSKA 1008

Query: 919  VIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            ++   +L +  A+  + + +S ++  +  +  +      Q  + K    + L V      
Sbjct: 1009 ILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEFKPLHLEQLKVGDRYIG 1068

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTA 1034
             V  + E+ L L++ P     +    +S D + +   QK F  G ++   V  +      
Sbjct: 1069 FVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVTGIDVEKN- 1127

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             RL L  +  S  +T +     K      G ++   +T+I   ++ ++      G I + 
Sbjct: 1128 -RLDLSARIGSSAKTLTVADLSK------GMILVGRVTKITDRQVLVQINDNVVGAISLI 1180

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG--S 1152
            ++ DD + V     +NF   + +   ++   + P+ K SF    S++PS +  S +    
Sbjct: 1181 DMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKISF----SVRPSKVLSSSLAVVD 1232

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
              +    ++ +GQ V G+V +VDN    +T+   + A  +I  S    S L+E++  F +
Sbjct: 1233 PEITSIDNLKVGQIVRGFVRRVDNIGVFVTLGHDVTA--YIRVSDLSDSFLKEWKDEFQV 1290

Query: 1213 GKAVTGHVLSINKEKKLLRLVLR----------PFQDGISDKTVDISNDNMQTFIHEGDI 1262
             + V G +  ++K+   +++ L+          PF              N++  +  G I
Sbjct: 1291 DQLVQGRLTVVDKDNNKIQMSLKKSALDPNYKPPF--------------NLKD-LKIGQI 1335

Query: 1263 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            V G++ K+      + +    +L G  H +E+    V D    Y++   VK KVL++
Sbjct: 1336 VTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKV 1392


>gi|260950407|ref|XP_002619500.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720]
 gi|238847072|gb|EEQ36536.1| hypothetical protein CLUG_00659 [Clavispora lusitaniae ATCC 42720]
          Length = 1677

 Score =  411 bits (1057), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 386/1486 (25%), Positives = 692/1486 (46%), Gaps = 166/1486 (11%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            V PG +V   +  +   G   +  G V A   LPH+ E+ + K    F +G+ +  R++G
Sbjct: 292  VHPGTLVNAIIAELSDDGVAARLFGMVDASFTLPHVEEYALEKLKNSFGIGSTVRARIIG 351

Query: 556  VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI--TKIEKHGC---FVRFYNGVQ 610
               +  T     +   + LA+      +       G+I  + IE  G    F+    G  
Sbjct: 352  TLLQNGTKKFILSRATAPLALQPELDSSALEAFPVGFIFDSGIEVVGADSDFIYLSTGSH 411

Query: 611  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN--LSFMMKPTR-----VSE 663
              A   +  +DP  +P+  Y VG     R++       RI+  L   + P       VS 
Sbjct: 412  -MAQVHKSQVDPELDPNMNYPVGSKHNARVL----GYNRIDNLLVVTLNPKLIASKFVSA 466

Query: 664  DDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            DD V +G  +  V +  +   A  + V   G  +  +P  H++D          ++ P  
Sbjct: 467  DD-VPVGEYIPAVEIIKILDEAKGMIVKIFGDFEALVPANHMSDI--------KLVYPER 517

Query: 723  EFD-----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY-----VCNI 772
            +F      +  VL      L ++ + SL+N    +  DA      +VV G+     V   
Sbjct: 518  KFKVGGKVKGRVLYKNGKKLFVTLRKSLVN----MEDDAIVSDIENVVVGFKTTAIVDRF 573

Query: 773  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            +  G  V F G+L  + P+S+  +    +      +GQ+V   IL VN+E  +I+++L+Q
Sbjct: 574  VPGGALVTFFGKLRAYLPKSEISETFVEEAKDYLKLGQAVTVRILSVNAEENKISVTLRQ 633

Query: 833  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVV 891
            S                         ++ +  +++ +E   IG +++E  + E     V+
Sbjct: 634  S-------------------------TELSNKQIEHLESISIGRTLVEANIVEKTKEAVI 668

Query: 892  VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV---DLSLKTVFIDRFRE 948
            +  E  S++ G I+ + L+    E   +I   +      E LV   D+  +TV     + 
Sbjct: 669  IELE-GSNLRGVISTNHLSDGNYEENRIIYKNLEIGGSIEVLVLEKDIRARTVIASAKKS 727

Query: 949  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
              +  + +      E   D+ V   V   ++ V    L +S       +  A  +  +  
Sbjct: 728  LITAARTETLPVHYE---DIHVGSMVPGYIKSVTNLGLFVSFGGRLTGLVLAKNATNDPT 784

Query: 1009 KFPQKQFLNGQSVIATV-----------MALPSSSTAGRLLLLLKAISETETSSSKRAKK 1057
            +    +F   QSV+  V           ++L SS +AG         S+       + K 
Sbjct: 785  EDLSSKFYKNQSVVCDVIKTDDDNKRFLLSLTSSDSAGAF-----ESSKLSNPVDAQMKS 839

Query: 1058 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQ 1115
            K+ Y VG      I  I+P  L+++      GR+   +      ++ +  N  ++F +G+
Sbjct: 840  KTDYAVGVSTFGVIDSIEPGYLKIRLADNLEGRVEANQCIRSWKSIKDPKNPLASFTVGE 899

Query: 1116 TVTARIIAKSNKPDMK-KSFLWELSIKPSM---LTVS--EIGSKLLFEE---CDVSIGQR 1166
             V  +++      D K  SF    + K +    LT +  ++ SK  ++     D+++G  
Sbjct: 900  KVPVKVLGTY---DYKWHSFTTAAAFKKTTVLSLTTAKDQLKSKSPYKPDQLSDITVGSE 956

Query: 1167 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
               Y+ +  N  A ++++  +K ++ + + + + S+  +F   F +G A+  +V+ I+ E
Sbjct: 957  YVVYIERFHNGTAKVSLTPSIKGEISVYNLSDDMSKYSKFDESFPLGTALKANVIGIDFE 1016

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPH 1284
              +++L  R                N+ +F  +  GD    ++ K+      ++V++ P 
Sbjct: 1017 HGMVKLSAR--------------KQNLTSFTQLKVGDQYPAKVFKVTKSF--VLVELAPG 1060

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD--GMSS 1342
            L G  + T        D L  YD         L++  T      V +++  +L+  G  S
Sbjct: 1061 LVGYSYIT--------DALDDYD---------LKLEETYHINQPVAVTITETLENEGKFS 1103

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
             +  +  T  D P   +  I +L    +V+G++K + + G ++ L R L A V +SN+SD
Sbjct: 1104 VSLRNEKTAKDKP---VNSISELHRGDVVKGFIKAINNAGLYVSLGRDLFALVPVSNISD 1160

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1462
             ++   +K F   + + G+++  + +  R+ +TLK S+      ++      L +G+I  
Sbjct: 1161 AFLVDWKKFFKPFQSIVGKIVQCK-VEGRITMTLKESE-LNGHLADYKTFDELEIGEIYD 1218

Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            G +K+V  YG+F+ ++ T + GLCH SE++++ V+N   ++  G++VKVKILK+ K+K++
Sbjct: 1219 GTVKKVADYGVFVKLDGTAVDGLCHRSEIADNQVENAAALFAEGDRVKVKILKIFKDKKQ 1278

Query: 1523 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGS 1582
            +SLGMK+SYF    +N   S + E  EA ++      +S  E  +    D D  S+    
Sbjct: 1279 LSLGMKASYFTEADEN---SDDVEMAEASDDDDEEEVNSEDEVMAEGFSDNDQSSDSEDE 1335

Query: 1583 LVLAQIESRASVPP----LEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEK 1638
               +  E   + P     L  N  D    + +    N+  +DE +   E + +  +K +K
Sbjct: 1336 EEESAKEGTDAAPTGLSGLSTNGFDWTASILDQAEDNESSSDEDEDFTESHKKRKRKGKK 1395

Query: 1639 --EEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1696
              E++  EI A         AP +  +FER++  +P+SS +W+ YM+F L + +++K+R 
Sbjct: 1396 NVEDKTSEINAR--------APESVQDFERMIIGNPDSSVLWMNYMSFQLQLGEIDKSRE 1447

Query: 1697 IAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL 1756
            IAERAL+TIN REE EK+NIW+A  NLEN +G+  EE++   F+RA+Q+ D   +H  L+
Sbjct: 1448 IAERALKTINYREEQEKMNIWIAILNLENTFGS--EESLDAAFKRAVQHMDSLTMHQKLI 1505

Query: 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRH 1815
            G+Y+ +E+   ADEL   M KKF  +  VW+     L+ ++  +    ++ RAL SLP+ 
Sbjct: 1506 GIYQLSEKFDKADELYRVMTKKFAKNVNVWVSFGSSLMDRKLFDDAHELLARALQSLPKS 1565

Query: 1816 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875
             HI  + + A LEF  G  ++GRS+FEG++++ PKR DLW++Y+DQEI+ GD + I  LF
Sbjct: 1566 SHIDVVRKFAQLEFAKGDPEQGRSLFEGLVTDAPKRIDLWNVYIDQEIKQGDREKIVSLF 1625

Query: 1876 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            ER ++  L  K+ KF F K+L YE+  G E+    VK  A+EYV+S
Sbjct: 1626 ERVVTKKLSRKQAKFFFSKWLGYEEEHGSEQSASRVKALAVEYVQS 1671



 Score =  192 bits (489), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 229/838 (27%), Positives = 368/838 (43%), Gaps = 93/838 (11%)

Query: 54  FPRGGGHSLTQRERDEI--HAEVDAEFEAVERGLHK--------KNKKKKKKTERKANET 103
           FPRGGG  LT  E   I   A  D  FE  +             K +KK+ KT     ET
Sbjct: 16  FPRGGGSVLTPLEMKTISNKATEDVLFEQAQASKRSGGSTSHPAKKRKKQSKTAVSKTET 75

Query: 104 VDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---- 159
            +        GIS       + +TLKN+  G ++ G +  V++ DLV+ +   L G    
Sbjct: 76  EEK-------GIS------VDHMTLKNLIPGCEVLGQIVRVDKMDLVLAITDNLVGRVPI 122

Query: 160 ----------LARAADALDPILDNEIE-----ANEDNLLPTIFHVGQLVSCIVLQLDDDK 204
                     L +   A+D   + + E     A E   L ++F  GQ +  IV    +  
Sbjct: 123 TAIGAEVSAMLEKYEAAMDSSDEEDDEPTQSFAPEFPKLASLFEPGQWLRAIVTPTPE-- 180

Query: 205 KEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRN 264
              G+R + LS+  S +   +  +    G ++ A VKSIEDHG +L+ G+   +GFL + 
Sbjct: 181 ---GQRGLHLSIAPSDVNASMESDDFTPGNIVQASVKSIEDHGVVLNLGVGKLSGFLSKK 237

Query: 265 NL--AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS-KCVTKDLKGISIDLLVP 321
            L  A+        G ++   V S D  R V    ++ + VS K V   +   SID + P
Sbjct: 238 ELKKADIPLSSFTVGKVILTSVASAD-ARTVSLRPAEKENVSKKTVVTTIS--SIDAVHP 294

Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL--- 378
           G +V+  +  + ++GV          +  + H++  +     KN +     V ARI+   
Sbjct: 295 GTLVNAIIAELSDDGVAARLFGMVDASFTLPHVEE-YALEKLKNSFGIGSTVRARIIGTL 353

Query: 379 -------FVDPTSRAVG-LTLNPYLLHNRAPPSHVKVGDIYDQS-KVVRVDRGLGLLLDI 429
                  F+   SRA   L L P L  + +      VG I+D   +VV  D     L   
Sbjct: 354 LQNGTKKFI--LSRATAPLALQPEL--DSSALEAFPVGFIFDSGIEVVGADSDFIYL--- 406

Query: 430 PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGL 489
             +  S  A V  S V  E    +   Y  GS    R+LG+  ++ L    L        
Sbjct: 407 --STGSHMAQVHKSQVDPELDPNM--NYPVGSKHNARVLGYNRIDNLLVVTLNPKLIASK 462

Query: 490 VFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
             +  DV  G  +   ++I +  ++ G IV+  G  +AL P  HMS+ ++V P +KFKVG
Sbjct: 463 FVSADDVPVGEYIPAVEIIKILDEAKGMIVKIFGDFEALVPANHMSDIKLVYPERKFKVG 522

Query: 547 AELVFRVLGVKSKRITVTHKKTLVKSK-LAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            ++  RVL    K++ VT +K+LV  +  AI+S          T   + +    G  V F
Sbjct: 523 GKVKGRVLYKNGKKLFVTLRKSLVNMEDDAIVSDIENVVVGFKTTAIVDRFVPGGALVTF 582

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           +  ++ + P+SE+      E      +GQ V  RI+S      +I+++ + + T +S   
Sbjct: 583 FGKLRAYLPKSEISETFVEEAKDYLKLGQAVTVRILSVNAEENKISVT-LRQSTELSNKQ 641

Query: 666 LVKLGSLVSGVV----DVVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIK 719
           +  L S+  G      ++V      V +  +G + +G I T HL+D + E   ++   ++
Sbjct: 642 IEHLESISIGRTLVEANIVEKTKEAVIIELEGSNLRGVISTNHLSDGNYEENRIIYKNLE 701

Query: 720 PGYEFDQLLVLDNE--SSNLLLSAKYSLINSA--QQLPSDASHIHPNSVVHGYVCNIIET 775
            G    ++LVL+ +  +  ++ SAK SLI +A  + LP     IH  S+V GY+ ++   
Sbjct: 702 IGGSI-EVLVLEKDIRARTVIASAKKSLITAARTETLPVHYEDIHVGSMVPGYIKSVTNL 760

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G FV F GRLTG      A +    DLS  +Y  QSV  +++  + +  R  LSL  S
Sbjct: 761 GLFVSFGGRLTGLVLAKNATNDPTEDLSSKFYKNQSVVCDVIKTDDDNKRFLLSLTSS 818



 Score = 51.2 bits (121), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 107/484 (22%), Positives = 207/484 (42%), Gaps = 72/484 (14%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNVVENLFSNFKIGQTV-TARI 1121
            G++VQA +  I+   + L  G+G   G +   E+   K+++     S+F +G+ + T+  
Sbjct: 206  GNIVQASVKSIEDHGVVLNLGVGKLSGFLSKKELK--KADIP---LSSFTVGKVILTSVA 260

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
             A +    ++ +    +S K  + T+S I +        V  G  V   + ++ ++    
Sbjct: 261  SADARTVSLRPAEKENVSKKTVVTTISSIDA--------VHPGTLVNAIIAELSDD---- 308

Query: 1182 TISRHLKAQLF-ILDSAY-----EPSELQEFQRRFHIGKAVTGHVLSI---NKEKKLL-- 1230
                 + A+LF ++D+++     E   L++ +  F IG  V   ++     N  KK +  
Sbjct: 309  ----GVAARLFGMVDASFTLPHVEEYALEKLKNSFGIGSTVRARIIGTLLQNGTKKFILS 364

Query: 1231 ----RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
                 L L+P          ++ +  ++ F   G I    I  + +    + +  G H+ 
Sbjct: 365  RATAPLALQP----------ELDSSALEAF-PVGFIFDSGIEVVGADSDFIYLSTGSHM- 412

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1346
             +VH +++      DP   Y  G     +VL  +R       + ++L   L      ++ 
Sbjct: 413  AQVHKSQVDPEL--DPNMNYPVGSKHNARVLGYNRIDN---LLVVTLNPKLIASKFVSAD 467

Query: 1347 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
            D+      P   + KI D +  MIV+ +       G F       +A V  +++SD  + 
Sbjct: 468  DVPVGEYIPAVEIIKILDEAKGMIVKIF-------GDF-------EALVPANHMSDIKLV 513

Query: 1407 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
             PE++F +G  V GRVL      K++ VTL+ S       + ++++ N+ VG      + 
Sbjct: 514  YPERKFKVGGKVKGRVLYKN--GKKLFVTLRKSLVNMEDDAIVSDIENVVVGFKTTAIVD 571

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
            R    G  +T     L      SE+SE  V+  +   + G+ V V+IL V+ E+ +IS+ 
Sbjct: 572  RFVPGGALVTFFG-KLRAYLPKSEISETFVEEAKDYLKLGQAVTVRILSVNAEENKISVT 630

Query: 1527 MKSS 1530
            ++ S
Sbjct: 631  LRQS 634


>gi|440912389|gb|ELR61959.1| Protein RRP5-like protein, partial [Bos grunniens mutus]
          Length = 1304

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 387/1369 (28%), Positives = 640/1369 (46%), Gaps = 162/1369 (11%)

Query: 54   FPRGGGHSLTQRER--------DEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
            FPRGG     + E+        D +  ++  E E+ +R   KK +K   KT++   ET  
Sbjct: 11   FPRGGTRKTHKSEKAFQQSVEQDNLF-DISTEEESTKR---KKIQKGPAKTKKLKVETRQ 66

Query: 106  DLGSLFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA 164
                      S K  R   +I  ++++  GM++ G V EVNE +LVI LP GL+G  +  
Sbjct: 67   ----------SSKFVREKFEILNVESLCEGMRILGCVKEVNELELVISLPNGLQGYVQVT 116

Query: 165  DALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLR 217
            +  D   +  NE  A E+ L     LP +F  G LV C+V  LD  K    K+ + LSL 
Sbjct: 117  EICDAYTEKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTKGS--KKNVMLSLN 174

Query: 218  LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGI 272
               + + LS ET++ GM+LT  V S+EDHGY++  G+     FLP     E     N G 
Sbjct: 175  PKNVNRVLSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIWQKNKGA 234

Query: 273  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
             +K G  L  ++  +  +R VV LS     VS  +  + +  +++ L+PG++V  +VQ +
Sbjct: 235  KLKVGQYLNCLIEEVKGSRGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKV 294

Query: 333  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
               G+ L FL++F+G VD  HL      T + N     ++V A +L V P +RAV L+L 
Sbjct: 295  TPLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLR 349

Query: 393  PYLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
            P  L    P + +   ++G + D   V       G    +      T AY   + ++  +
Sbjct: 350  PVFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSK 406

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
                 + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG +VKGKV+ +
Sbjct: 407  KTFKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTI 466

Query: 510  DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567
               G +V+    ++ L P  H+++  I  P KK+ VG E+  RVL    K+K++ +T KK
Sbjct: 467  KPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKK 526

Query: 568  TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
            TLV+SKL  ++ Y +A   L THG+I +++ +GC V+FYN VQG  PR EL  +   +P 
Sbjct: 527  TLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPE 586

Query: 628  SMYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDD------LVKLGSLVSGVVDV 679
            S+++ GQVVK  +++  P+  R+ LSF +   P +  E         V  G LV   V  
Sbjct: 587  SVFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQECEGQSQKKKKAVSAGQLVDVKVLE 646

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T + + V V+      G +PT HL+DH+ +  ++   ++ G    ++L L      +LL
Sbjct: 647  KTKDGLKVAVLPHNIP-GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLL 705

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S IHP  ++ G+V NI + G FV+F   L+G AP++   D 
Sbjct: 706  CRKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDK 765

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEK-- 852
                 S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +          LEE+  
Sbjct: 766  FVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQG 825

Query: 853  IAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQL 909
            +  L S++ +   ++ +     G  ++ +V E  + G V+ F E   V G +   + +  
Sbjct: 826  VRSLMSNR-DSVLIQTLAEMTPGMALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHR 882

Query: 910  AGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG 969
            AG  +E G   +A IL+V   +  V +SL    +        NR+A+K K+  +      
Sbjct: 883  AGQELEPGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSD------ 928

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMAL 1028
                + AIV+ ++E++ V SL E  H   ++  S  N T +F  ++   GQ V  T+   
Sbjct: 929  ----LQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTT 984

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQA 1069
                T   LLL ++  +   T    R                     KK +  +G +V  
Sbjct: 985  EPGVTG--LLLAVEGPAAKRTMRQTRKDSETVDEDEEVDPALVIGTVKKHTLSIGDMVTG 1042

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD 1129
             +  IKP  + +    G  G IH + + DD   V  +  +  K+G+ VTAR+I      D
Sbjct: 1043 TVKSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKKVTARVIGGR---D 1098

Query: 1130 MKK-SFL-----------WELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYV 1171
            MK   FL            ELS++PS L      T++      L +      GQ VT ++
Sbjct: 1099 MKTFKFLPISHPRFIRTIPELSVRPSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFL 1158

Query: 1172 --YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK- 1228
              Y +  +W  + I+  ++ ++ +L ++     L+   ++F IG+A+   V+   +  K 
Sbjct: 1159 KKYNMVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKA 1218

Query: 1229 -LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
             L   ++ P +                  + +G++  GR+ K+ +   GL V       G
Sbjct: 1219 FLCLSLIGPHK------------------LKKGEVAMGRVVKV-TPKEGLTVSFPFGRVG 1259

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            RV    + +      L  +   Q V+C VL  +  V     + LSLRSS
Sbjct: 1260 RVSMFHVSDSYSETHLEDFVPQQIVRCYVLSAATPV-----LTLSLRSS 1303



 Score = 70.5 bits (171), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D+ P  +V+G V  +   G  + + +++   V   +L+D  +++PEK++ +G  V  RVL
Sbjct: 452  DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 511

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1480
              +P +K++ +TLK    +T  +S++  ++   +   G    G I RV+ YG  +   N 
Sbjct: 512  LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 566

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            ++ GL    ELS ++V + E+++  G+ VKV +L  +  K R+ L  +
Sbjct: 567  DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 614



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/385 (21%), Positives = 157/385 (40%), Gaps = 44/385 (11%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G+LV+ ++  IKP  + +K G    G +    + D    +++N    + +G  V  R++ 
Sbjct: 456  GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 511

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1179
                       L +   K  M+T+ +  + SKL    C  D   G +  G++ +V +   
Sbjct: 512  -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 560

Query: 1180 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            ++     ++  +    L + Y P      +  F+ G+ V   VL+    K+ + L  R  
Sbjct: 561  IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 616

Query: 1238 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELKN 1296
             D    +  +  +   +  +  G +V  ++  +     GL V + PH + G +    L +
Sbjct: 617  SD--PKQECEGQSQKKKKAVSAGQLVDVKV--LEKTKDGLKVAVLPHNIPGFLPTAHLSD 672

Query: 1297 ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1356
               + PL             L        T H  L L  S + +       L + V+  G
Sbjct: 673  HVTNGPL-------------LYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEG-G 718

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            ++ +   ++ P M++ G+VKN+   G F+     L      + LSD +V S    F  G+
Sbjct: 719  QNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQ 778

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDS 1441
             V  +V +V+   +R+ ++L+ SD 
Sbjct: 779  TVVAKVTNVDEEKQRMLLSLRLSDC 803



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 168/434 (38%), Gaps = 60/434 (13%)

Query: 1111 FKIGQTVTARIIAKSNKPDM----------KKSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
            FK G T   RII  S   ++          +  FLW   IKP  L   ++          
Sbjct: 414  FKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKV---------- 463

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
              +  +  G V K+  +   L  + HL A + I +           ++++H+G  V   V
Sbjct: 464  --LTIKPHGMVVKMGKQIRGLVPTMHL-ADILIKNP----------EKKYHVGDEVKCRV 510

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
            L  + + K L + L+          +   +D        G I+  R+        G +V+
Sbjct: 511  LLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFIL--RVKDY-----GCIVK 563

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1340
                + G V   EL    V DP S +  GQ VK  VL    +        LS R   D  
Sbjct: 564  FYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERML---LSFRLLSDPK 620

Query: 1341 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSN 1399
                        +  G+  +K + +S   +V   V   T  G  + +L   +   +  ++
Sbjct: 621  Q-----------ECEGQSQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPTAH 669

Query: 1400 LSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLH 1456
            LSD     P        G  +  RVL +    +RV +  K +  S         + S +H
Sbjct: 670  LSDHVTNGPLLYHWLQTGDTLH-RVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSEIH 728

Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
             G ++IG +K ++ YG+F+    + L GL   + LS+  V +    +  G+ V  K+  V
Sbjct: 729  PGMLLIGFVKNIKDYGVFVQFP-SGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVTNV 787

Query: 1517 DKEKRRISLGMKSS 1530
            D+EK+R+ L ++ S
Sbjct: 788  DEEKQRMLLSLRLS 801


>gi|403217806|emb|CCK72299.1| hypothetical protein KNAG_0J02180 [Kazachstania naganishii CBS 8797]
          Length = 1704

 Score =  408 bits (1049), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 344/1202 (28%), Positives = 573/1202 (47%), Gaps = 164/1202 (13%)

Query: 774  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            +TGC V F G + GF P ++  +       +   +GQ+V   +L V++E  RI      +
Sbjct: 606  KTGCIVSFFGGVRGFLPNAEISEVFVKKPEQHLRLGQTVVVRLLKVDAEDSRIL-----A 660

Query: 834  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
             C  ++A   ++    +E I  L   +               S+I   V E     +++ 
Sbjct: 661  TCKVSNAQAQEQ----KETIEQLVPGR---------------SMINVTVVEKTKDALIIE 701

Query: 894  FEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFI 943
             ++  ++ G +    L+ + +E           G+ ++  ++D     ++ +++LK   I
Sbjct: 702  MDK-VELRGVLQVGHLSDSRIEQNRADFKKIAIGTHLRGLVIDKETRTQVFNMTLKKSLI 760

Query: 944  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKENYLVLSLPEYNHSIG 998
            +    A            +  SKD  +   V +I +          ++ L LP Y     
Sbjct: 761  E---AAEKEELPTSYSDIKAVSKDTPLCGYVKSISDKGLFIAFNGKFVGLVLPSYAVESR 817

Query: 999  YASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA-----------ISET 1047
               +S         K F   QSV A +  L S     R LL LKA             E 
Sbjct: 818  DVDIS---------KTFFINQSVSAYL--LRSDDENERFLLTLKAPKIESKKKEPASDEV 866

Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
                    KK S Y +G +V+  I  +K  +L +      HGRI ++EV D+ S+++   
Sbjct: 867  TNPIDNSIKKLSDYTIGKIVKGTIKAVKKNQLNIILADDLHGRIDVSEVYDNYSDILNTK 926

Query: 1108 --FSNFKIGQTVTARIIA----KSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLF 1156
               S FK G  + A+I+     KS+K       +KK  + ELSIKPS+L+ SE    L  
Sbjct: 927  APLSQFKNGSIIEAKIVGNHDIKSHKFLPITHQIKKGTVLELSIKPSVLS-SEDNRPLSL 985

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGKA 1215
            +  D+SIG  + G+V      +  LTIS  LKA+L + D   +  EL +  +  F +G A
Sbjct: 986  K--DISIGDELVGFVNNYSLNFLWLTISPILKAKLSMFDLTEDGLELSKNIEDNFPLGSA 1043

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   V +I+   +   +       G S    D  +      I   D++  RI KI     
Sbjct: 1044 IPVKVTAIDSTHEFATVT------GRSHVVKDFDS------IAVNDVIPARIGKIFENF- 1090

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE--GQFVKCKVLEISRTVRGTFHVELSL 1333
             L++ +G  + G V  T+  +   +     Y +   + V  KV+ I +  +    + LSL
Sbjct: 1091 -LLLDLGNSITGLVFATDALDSFSTSLNEAYGDKVNRIVSAKVVAIDKKNK---KINLSL 1146

Query: 1334 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1393
            RS    + +  S                  DL    IV G VK V  KG F+ LSR ++A
Sbjct: 1147 RSEASKVPTVTS----------------YSDLKQGDIVHGLVKTVNDKGIFVYLSRTVEA 1190

Query: 1394 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1453
             V +S LSD Y++  +K +   + V G+V+  E   K + +TL+ S+        + N  
Sbjct: 1191 FVPISKLSDAYLKDWKKFYKPMQHVIGKVVKSED-DKHILITLRESEV-NGDLKVLKNYD 1248

Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
            ++ VG++  G +K +  +G+FI ++NT N+ GL H+SE+++   ++I +++  G+KVK  
Sbjct: 1249 DIKVGEVFKGSVKNITDFGVFIKLDNTANVTGLAHISEIADSTPNDISSLFGPGDKVKAI 1308

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQD 1572
            +LK +  K+++SL +K+S+F           E + ++  +++ + N      +S V V D
Sbjct: 1309 VLKTNSAKKQLSLSLKASHF--------TKEETDEEKDEDQIATVNFDD--ADSEVDV-D 1357

Query: 1573 MDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKN--- 1629
             D+E+E                 P ++ L     D   G+S + G       +D+     
Sbjct: 1358 SDIENE-----------------PEKMKLTSMSTD---GLSLSSGFDWTTSILDQARESE 1397

Query: 1630 --------NRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKY 1681
                    N    KK K +R   I   +   +   AP +  +FERL+  +PNSS VW+ Y
Sbjct: 1398 SESEDEEDNFMESKKHKHKRRDRIVQDKTIDINTRAPESVGDFERLIMGNPNSSVVWMNY 1457

Query: 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741
            +AF L +++VEKAR IAERAL+TIN REE EKLNIW+A  NLEN +G P  + +  +F+R
Sbjct: 1458 IAFQLQLSEVEKAREIAERALKTINFREETEKLNIWIAMLNLENTFGTP--DTLDDIFKR 1515

Query: 1742 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQE 1799
            A QY D   +H  LL +Y+ +++ + A  L     KKF      +W+   + LL   +++
Sbjct: 1516 ACQYMDSYTMHNKLLSIYQMSDKTEAAATLFKATAKKFGSEKVSIWIAWSEFLLANGEED 1575

Query: 1800 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859
            G + ++  AL +LP+  H++ + + A LEF  G ++RGRS+FEG+L++ PKR D+W++Y+
Sbjct: 1576 GARNILSNALKALPKRHHVEVVRRFAQLEFSKGDSERGRSLFEGLLADAPKRIDIWNVYI 1635

Query: 1860 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
            DQE + GD   +  L+ER  S  +  K+ KF F K+L++E++ G+E+ I+YVK KA EYV
Sbjct: 1636 DQESKAGDKQKVDALYERVFSRKITKKQAKFFFNKWLQFEETAGDEKMIDYVKAKASEYV 1695

Query: 1920 ES 1921
            +S
Sbjct: 1696 DS 1697



 Score =  179 bits (454), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 313/1374 (22%), Positives = 596/1374 (43%), Gaps = 176/1374 (12%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKK--KKKKTERKANETVDDLGSLF 111
            FPRGG  +L+  E  ++  E  ++   V  G +K + +  + KK ++ + +  D  G L 
Sbjct: 38   FPRGGASALSPLELKQVANEAASD---VLFGNNKTSTEVSRPKKKKKTSIKDKDAAGELN 94

Query: 112  GDG-ISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA------ 164
             D  +  +     + I+ +++  G  L G V+E+N+ D+ +    G+ G           
Sbjct: 95   EDAALEDEKLSVVHHISFRSLKVGSSLIGQVSEINKNDICVTFSDGISGFVNLTHISEQF 154

Query: 165  ----DALDPILDNEIE-----------ANEDNLLPTI---FHVGQLVSCIVLQ---LDDD 203
                + LD  +D++ E           A E   LP +   F +GQ + C VL    L   
Sbjct: 155  THILEELDENMDSDEEKESEYESDNEKAAEAKELPDLKNYFKLGQWLRCNVLTNNALTTK 214

Query: 204  KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR 263
             K   KR+I L++  S +    + E + +   +   VKS+EDHG  L  G+   TGF+ +
Sbjct: 215  SKNNKKRRIELTIEPSYV-NTFTEEDLVKSAPVQCSVKSVEDHGATLDVGVVGITGFISK 273

Query: 264  NNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS-IDLLVPG 322
             ++  + G+   PG +  G V    +T +VV ++ D  +    +T+    IS +D LVPG
Sbjct: 274  KDIGSSLGL--LPGAVFLGNVYK--QTERVVNINLDFSSKKNKITQ----ISNVDALVPG 325

Query: 323  MMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL--FV 380
            M +    ++I  +G++        G +   HL   F   + K+ +     +  R+L   +
Sbjct: 326  MSLDLLCKAITPSGIVGKCFGLVNGFISSAHL-GVFKEDDMKHKFAIGSNIQCRVLATLI 384

Query: 381  DPTSRAVGL-TLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
            +  S  V L +L P +   R  P+ +K  + ++   +       G   +          Y
Sbjct: 385  NNESEKVALLSLIPNI--ERLEPT-LKCTEAFEAFPI-------GYNFETTKVKGRDSEY 434

Query: 440  VTISDVAEEEVRKLEK----KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 495
            + ++ V ++ V ++ K    +      ++ +++G+  ++ +                  D
Sbjct: 435  LYLA-VDDDRVGRVHKSRIGELDSTDNLKAKVMGYDIVDNMYELATDPKILALKYVRSKD 493

Query: 496  VKPGMVVKGKVI-AVDSFGAIVQFPGG--VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
            +K G ++   ++ AV   G  ++   G  V  + PL H+S+  +V P +KFK+G ++  R
Sbjct: 494  IKIGELLTTCIVNAVSEKGIELKIFNGQFVATVSPL-HISDTRLVYPERKFKIGGKVKAR 552

Query: 553  VLGVKSK-RITVTHKKTLV---KSKLAILSSYAEA-TDRLITHGWITKIE---KHGCFVR 604
            +L V ++ RI  T KK+LV   + +  I+SSY  A T +      +  +E   K GC V 
Sbjct: 553  ILNVDNRGRIYATMKKSLVNLEQDETPIISSYEIAKTAKEKNEKTLATVEVFRKTGCIVS 612

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE- 663
            F+ GV+GF P +E+      +P     +GQ V  R++       RI  +  +   +  E 
Sbjct: 613  FFGGVRGFLPNAEISEVFVKKPEQHLRLGQTVVVRLLKVDAEDSRILATCKVSNAQAQEQ 672

Query: 664  ----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 718
                + LV   S+++  V   T +A+++  + K   +G +   HL+D  +E        I
Sbjct: 673  KETIEQLVPGRSMINVTVVEKTKDALIIE-MDKVELRGVLQVGHLSDSRIEQNRADFKKI 731

Query: 719  KPGYEFDQLLVLDNESSNLL--LSAKYSLINSA--QQLP---SDASHIHPNSVVHGYVCN 771
              G    + LV+D E+   +  ++ K SLI +A  ++LP   SD   +  ++ + GYV +
Sbjct: 732  AIGTHL-RGLVIDKETRTQVFNMTLKKSLIEAAEKEELPTSYSDIKAVSKDTPLCGYVKS 790

Query: 772  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            I + G F+ F G+  G    S AV+ +  D+SKT+++ QSV + +L  + E  R  L+LK
Sbjct: 791  ISDKGLFIAFNGKFVGLVLPSYAVESRDVDISKTFFINQSVSAYLLRSDDENERFLLTLK 850

Query: 832  QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG--KVHESNDFG 889
                 S            +++ A  + +    + +K +  + IG +++G  K  + N   
Sbjct: 851  APKIESK-----------KKEPASDEVTNPIDNSIKKLSDYTIGKIVKGTIKAVKKNQLN 899

Query: 890  VVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAIL---DVA---------- 928
            ++++ + H         D Y  I + +   +  ++GS+I+A I+   D+           
Sbjct: 900  IILADDLHGRIDVSEVYDNYSDILNTKAPLSQFKNGSIIEAKIVGNHDIKSHKFLPITHQ 959

Query: 929  -KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLV 987
             K   +++LS+K   +     +  NR          + KD+ +   +   V     N+L 
Sbjct: 960  IKKGTVLELSIKPSVL----SSEDNRPL--------SLKDISIGDELVGFVNNYSLNFLW 1007

Query: 988  LSL-PEYNHSIGYASVSDYNTQ--KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAI 1044
            L++ P     +    +++   +  K  +  F  G ++   V A+ S+             
Sbjct: 1008 LTISPILKAKLSMFDLTEDGLELSKNIEDNFPLGSAIPVKVTAIDSTHEFA--------- 1058

Query: 1045 SETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV 1104
              T T  S   K   S  V  ++ A I +I    L L  G    G +  T+  D  S  +
Sbjct: 1059 --TVTGRSHVVKDFDSIAVNDVIPARIGKIFENFLLLDLGNSITGLVFATDALDSFSTSL 1116

Query: 1105 ENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1162
               + + K+ + V+A+++A  K NK  +  S   E S  P++ + S           D+ 
Sbjct: 1117 NEAYGD-KVNRIVSAKVVAIDKKNKK-INLSLRSEASKVPTVTSYS-----------DLK 1163

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
             G  V G V  V+++   + +SR ++A  F+  S    + L+++++ +   + V G V+ 
Sbjct: 1164 QGDIVHGLVKTVNDKGIFVYLSRTVEA--FVPISKLSDAYLKDWKKFYKPMQHVIGKVVK 1221

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
               +K +L + LR  +     K +   +D     I  G++  G +  I      + +   
Sbjct: 1222 SEDDKHIL-ITLRESEVNGDLKVLKNYDD-----IKVGEVFKGSVKNITDFGVFIKLDNT 1275

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
             ++ G  H +E+ +   +D  S +  G  VK  VL   +T      + LSL++S
Sbjct: 1276 ANVTGLAHISEIADSTPNDISSLFGPGDKVKAIVL---KTNSAKKQLSLSLKAS 1326


>gi|406867357|gb|EKD20395.1| rRNA biogenesis protein RRP5 [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1789

 Score =  408 bits (1049), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 275/886 (31%), Positives = 485/886 (54%), Gaps = 74/886 (8%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN--LFSNFKIGQTVTARI 1121
            G L +A+I+ +K  ++ ++      GRI ++++ D   ++ +      +F   Q +  R+
Sbjct: 932  GRLTKAKISSVKETQINVQLADNIQGRIDVSQIFDSFDDIKDRKRPVRSFSPKQILNVRV 991

Query: 1122 IAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
            +   +  + +         K+ ++ELS KPS     +    L  ++  V +G     YV 
Sbjct: 992  LGIHDAKNHRFLPISHRSGKTMVFELSAKPSDQN-DDPKEPLALDK--VKVGSSWVAYVN 1048

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
             +  E+  + +S +++ ++  L+ + + S+L+  +  F IG A+  HV  ++     L L
Sbjct: 1049 NIKEEYVWVNLSPNVRGRIPALELSEDVSKLKNLETHFPIGSAIKVHVKHVDAGNNRLDL 1108

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
                 Q   S   + + +      + +G +V G+++K  S    ++VQ+  +L   V+ T
Sbjct: 1109 SALSSQ---SSGPITLKS------LSKGMVVTGKVTK--STERHIMVQLSDNLSAPVNLT 1157

Query: 1293 ELKN-ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1351
            +L +    +DP + Y +G+ V+  V+++    +    + LS R S           LS+ 
Sbjct: 1158 DLADDYSEADP-TKYSKGEIVRVCVVDVDLPNK---KIRLSTRPS---------RVLSSS 1204

Query: 1352 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1411
            ++     + +I  L PN IV+G++KN+T  G FI L  K+DA V +++LSD +++  + E
Sbjct: 1205 LEVKDPEISEISQLKPNDIVRGFIKNITEAGLFINLGGKVDALVKVADLSDSFIKDWQSE 1264

Query: 1412 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1471
            + + +LV G+V+ ++     V+++LK S +         + ++L  G IV G+I++VE +
Sbjct: 1265 YEVDQLVKGKVIGIDKSRGNVQMSLKAS-ALDKDYVLPMSFADLRPGQIVTGKIRKVEEF 1323

Query: 1472 GLFITIENTN-LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            G FI I+ TN L GLCH +++++  VD+++++Y+AG++VK KI+ +D EKR+ISLG+K+S
Sbjct: 1324 GAFIVIDGTNNLSGLCHRTQMADKRVDDVKSLYQAGDQVKAKIVFLDAEKRQISLGLKAS 1383

Query: 1531 YFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESED-----GGSLVL 1585
            YF+++A +   S  E+ D  +E +     SS  E+      D+D+ES D     GG    
Sbjct: 1384 YFEDNAGSGDNSDGEDLD-GVEGIEIGGDSSGDEDGQDGGIDLDVESIDSNEGQGGG--- 1439

Query: 1586 AQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHA------KKKEKE 1639
               ES   +P       D Q D D       G    A  +DE++N  +      +K +K+
Sbjct: 1440 ---ESDLEMP-------DAQDDTDAPALSAGGFDWSANVLDEQSNAGSDNEGADEKPKKK 1489

Query: 1640 EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1699
             R+ EI       L+ + P++  +FERL+   P+SS +WI+YMAF + ++++ KAR +AE
Sbjct: 1490 RRKAEITVDRTGDLDVNGPQSVSDFERLLLGQPDSSTLWIQYMAFQMQLSELSKAREVAE 1549

Query: 1700 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1759
            RA++TINIREE EK+N+W+A  NLEN YG+  +E V +VF+RA QY D ++++  L  +Y
Sbjct: 1550 RAIKTINIREETEKMNVWIALLNLENAYGS--DETVEEVFKRACQYNDAQEIYERLTSIY 1607

Query: 1760 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKH 1817
             ++ ++  AD+L   ++KKF  S  VW      L       +  +A++ RA  SLP H H
Sbjct: 1608 IQSGKHSKADDLFQVLVKKFSQSPNVWANYAHFLHSTLSSPDRARALLSRAKQSLPSHTH 1667

Query: 1818 IKFISQTAILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875
            +    + A LEF  K G  +RGR+MFE +L+ +PKR D+W+  LD EI+  D D+IRG+F
Sbjct: 1668 VAITLKFAALEFHSKVGSPERGRTMFEALLTTFPKRLDIWNQLLDLEIQQNDKDIIRGVF 1727

Query: 1876 ERAISL--SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
            ER +    +L PK+    F+++ E+E+  G+++  E V  K  E+V
Sbjct: 1728 ERMVKTNKALKPKQAVAWFRRWSEWEEGNGDKKSKEKVLAKTQEWV 1773



 Score =  202 bits (514), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 324/1395 (23%), Positives = 588/1395 (42%), Gaps = 153/1395 (10%)

Query: 49   DDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLG 108
            D+   FPRGG   LT  E  +I  E   +    E+G + K+ +     E  A +      
Sbjct: 59   DEEVAFPRGGASLLTPLEHKQIQIEATRDV-LFEQGANSKSVEAGVNGEPAAKKKHKLKK 117

Query: 109  SLFGDGISGKLPRYANK------ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLAR 162
                     +      K      ++   I  G  + G V+++N+ D+ + LP  L G   
Sbjct: 118  VKGKGNKGSEAAEVEEKNVRIEGLSYTRIVPGSLVLGQVSQINDLDVALSLPNNLTGYVP 177

Query: 163  AADALDPILDNEIEA-------NEDNL------LPTIFHVGQLVSCIVLQLDDDKK--EI 207
                 D I +  IEA       +ED        L  +F +GQ +   V+   DD+     
Sbjct: 178  ITSISDKITE-RIEAIAAQEGEDEDETDLKDVNLKKLFSIGQYLRAYVVSTKDDEAAGSK 236

Query: 208  GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF--TGFLPRNN 265
             KR I LSLR       ++++ V     L A V S+EDHG I+  GLP     GF+  N 
Sbjct: 237  AKRHIELSLRPQQSNANIAVQNVVTNNTLMASVASVEDHGLIMDLGLPELGVKGFMSSNE 296

Query: 266  LAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS----IDLLV 320
            +     +  ++ G +    +  ++ + K V LS DP  ++   +K+ K +S    ID  +
Sbjct: 297  VGYGVALSSIEEGAVFLCTILGLNSSGKTVKLSVDPQKIAN--SKNPKYLSDAPTIDAFL 354

Query: 321  PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
            PG  V   V  I   G+    +     T D+ H        + +  Y    KV  R++  
Sbjct: 355  PGTAVEILVSEITLRGISGKVMGSLDVTADLMHSGAGASGKDLEKKYKIGSKVKGRLICT 414

Query: 381  DPTSRA--VGLTLNPYLLHN-----------RAPPSHVKVGDIYDQSKVVRVDRGLGLLL 427
             P S+   +G++L  ++L             + P   + +    ++ KV +V+ G+GL +
Sbjct: 415  FPNSQPAKLGVSLLDHVLSLSSLQGLLNSELKNPLDILPLSSFVEEVKVKKVEPGMGLFV 474

Query: 428  DIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKAS 484
            D+    V+   +V IS V + ++  L +    +K GS  R R++G+  L+GL    L+ S
Sbjct: 475  DVGVKGVA--GFVHISRVKDGKIETLAETSGPFKTGSVHRGRLIGYNALDGLYIVSLEPS 532

Query: 485  AFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKP 539
                      D+  G VVKGKV  I V+  G    +V    G+  L P  HM++  +++P
Sbjct: 533  ILAQPFLRVEDLSIGEVVKGKVEKIVVNERGVGGLLVNLADGISGLVPEAHMADVHLLRP 592

Query: 540  GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
             KKFK G+ ++ RVL      ++I +T KKTLV S  A+  SY +    + + G I  I 
Sbjct: 593  EKKFKEGSTVMARVLSTDPGKRQIRLTLKKTLVNSDAALFVSYDDIKVGMQSPGTIVNIL 652

Query: 598  KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---- 653
              G  V+FY  ++GF P +E+      +PS  + VGQVV   ++   P ++++ +S    
Sbjct: 653  STGAVVQFYGTIRGFLPVAEMSEAYIQDPSQHFLVGQVVNVHVVKVDPEAKKLIVSCKDP 712

Query: 654  --FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLE 709
              F +      +   +KLG +VS VV   + + + + +      + T+P   L D    +
Sbjct: 713  AAFGLAQQAAFKK--LKLGEVVSAVVTEKSNDNISLDLHG---IRATLPIGQLTDGSSQK 767

Query: 710  HATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQ--LPSDASHIHPNSVV 765
            +A+ +K  I+ G     L+VL    +   ++L+ K +L+  A+   L      +  + VV
Sbjct: 768  NASALKK-IRVGQTLTDLVVLGKYENKRLIILTNKPNLVKDAKAKLLLRSFEDVKEDKVV 826

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ--------------RADLSKTYYVGQS 811
            HG+V NI  T  FV+F G LTG  P+ K  +                +  +++  +  + 
Sbjct: 827  HGFVKNITLTAVFVQFAGGLTGLLPKVKLPEAAIRLPDFGMKKFQTLQVKITRVDHGQRQ 886

Query: 812  VRSNILD------VNSETGRITLSLKQSCCSSTDASF-----MQEHFLLEEKIAMLQSSK 860
             + +++D      V  ET   + S+ Q   +  D +      + +  L + KI+ ++ ++
Sbjct: 887  FQLSMVDAASKERVEPETPVSSGSINQEAVNPIDTTLTCLDDLTQGRLTKAKISSVKETQ 946

Query: 861  HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
             N           +   I+G++  S  F          D +  I   +    +     ++
Sbjct: 947  IN---------VQLADNIQGRIDVSQIF----------DSFDDIKDRKRPVRSFSPKQIL 987

Query: 921  QAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
               +L +  AK  R + +S ++     F  +          ++  A   + V  +  A V
Sbjct: 988  NVRVLGIHDAKNHRFLPISHRSGKTMVFELSAKPSDQNDDPKEPLALDKVKVGSSWVAYV 1047

Query: 979  EIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGR 1036
              +KE Y+ ++L P     I    +S D +  K  +  F  G ++   V  +     AG 
Sbjct: 1048 NNIKEEYVWVNLSPNVRGRIPALELSEDVSKLKNLETHFPIGSAIKVHVKHV----DAGN 1103

Query: 1037 LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
              L L A+S    S S       S   G +V  ++T+     + ++        +++T++
Sbjct: 1104 NRLDLSALS----SQSSGPITLKSLSKGMVVTGKVTKSTERHIMVQLSDNLSAPVNLTDL 1159

Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS--EIGSKL 1154
             DD S      +S  +I +     +    + P+ K      LS +PS +  S  E+    
Sbjct: 1160 ADDYSEADPTKYSKGEIVRVCVVDV----DLPNKK----IRLSTRPSRVLSSSLEVKDPE 1211

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
            + E   +     V G++  +      + +   + A + + D     S ++++Q  + + +
Sbjct: 1212 ISEISQLKPNDIVRGFIKNITEAGLFINLGGKVDALVKVAD--LSDSFIKDWQSEYEVDQ 1269

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
             V G V+ I+K +  +++ L+       D  + +S  +++     G IV G+I K+    
Sbjct: 1270 LVKGKVIGIDKSRGNVQMSLKASALD-KDYVLPMSFADLRP----GQIVTGKIRKVEEFG 1324

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
              +V+    +L G  H T++ +  V D  S Y  G  VK K++ +    R    + L L+
Sbjct: 1325 AFIVIDGTNNLSGLCHRTQMADKRVDDVKSLYQAGDQVKAKIVFLDAEKR---QISLGLK 1381

Query: 1335 SSL--DGMSSTNSSD 1347
            +S   D   S ++SD
Sbjct: 1382 ASYFEDNAGSGDNSD 1396



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 86/181 (47%), Gaps = 20/181 (11%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            G++V G++ KI+    GVGGL+V +   + G V    + ++ +  P   + EG  V  +V
Sbjct: 547  GEVVKGKVEKIVVNERGVGGLLVNLADGISGLVPEAHMADVHLLRPEKKFKEGSTVMARV 606

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L    T  G   + L+L+ +L              V++        +D+   M   G + 
Sbjct: 607  LS---TDPGKRQIRLTLKKTL--------------VNSDAALFVSYDDIKVGMQSPGTIV 649

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            N+ S G  +     +   + ++ +S+ Y++ P + F +G++V   V+ V+P +K++ V+ 
Sbjct: 650  NILSTGAVVQFYGTIRGFLPVAEMSEAYIQDPSQHFLVGQVVNVHVVKVDPEAKKLIVSC 709

Query: 1437 K 1437
            K
Sbjct: 710  K 710


>gi|297301793|ref|XP_001105950.2| PREDICTED: protein RRP5 homolog [Macaca mulatta]
          Length = 1858

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 397/1469 (27%), Positives = 672/1469 (45%), Gaps = 170/1469 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +  +  VV LS     VS  +  +     + L+ P              G
Sbjct: 236  GQYLNCIIEKVKGSGGVVSLSVGHSEVSTAIATEEISCFLILVTP-------------FG 282

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 283  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 337

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 338  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 394

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 395  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKSYG 454

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTLV+
Sbjct: 455  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVE 514

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 515  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 574

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 575  TGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 634

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  
Sbjct: 635  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLLCR 693

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 694  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 753

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQ 857
               S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  ++
Sbjct: 754  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQGVR 813

Query: 858  S--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
            S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  V
Sbjct: 814  SLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEV 873

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            ESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ  
Sbjct: 874  ESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ-- 916

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
             AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+       T
Sbjct: 917  -AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVT 975

Query: 1034 AGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEI 1074
               LLL ++  +   T    R                     KK +  +G +V   +  I
Sbjct: 976  G--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVKSI 1033

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-S 1133
            KP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK   
Sbjct: 1034 KPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKTFK 1089

Query: 1134 FL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
            FL            ELS++PS L    T     S    E+      GQ VT ++  Y V 
Sbjct: 1090 FLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVV 1149

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
             +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L L 
Sbjct: 1150 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVIGPDSSKAFLCLSL- 1208

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                        I    ++    EG++  GR+ K+     GL V       G V    + 
Sbjct: 1209 ------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHVS 1251

Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1355
            +     PL  +   + V+C +L  + +V     + LSLR      SS  + +  + V+ P
Sbjct: 1252 DSYSETPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVEDP 1300

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEF 1412
               +  I+D+    +++GYV ++   G F  L   +      S++S           K  
Sbjct: 1301 --EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSSSKKALYNKHL 1358

Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            P GKL+  RVL +      VE++    D+
Sbjct: 1359 PEGKLLTARVLRLNHQKNLVELSFLPGDT 1387



 Score =  293 bits (750), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1677
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1549 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1608

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1609 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1666

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1797
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1667 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1726

Query: 1798 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            Q G    V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1727 QAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1786

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1787 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1846

Query: 1917 EYVES 1921
            EYVE+
Sbjct: 1847 EYVEA 1851



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 46/326 (14%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 312  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 371

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 372  RLKDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 419

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +
Sbjct: 420  ---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVLTIKSYGMLVKV 459

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S
Sbjct: 460  GEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLVES 515

Query: 1448 E---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++ 
Sbjct: 516  KLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFY 574

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ VKV +L  +  K R+ L  K S
Sbjct: 575  TGQVVKVAVLNCEPSKERMLLSFKLS 600



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 188/463 (40%), Gaps = 57/463 (12%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1136
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 371  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 418

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
             LS++ S++    +         D+  G  V G V  + +   L+ +   ++  +     
Sbjct: 419  LLSLRTSIIEAQYLRYH------DIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLV----- 467

Query: 1197 AYEPSELQEF-----QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
               P  L +      ++++HIG  V   VL  + E K L + L+          +    D
Sbjct: 468  --PPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYAD 525

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                    G I+  R+        G +V+   ++ G V   EL    + DP   +  GQ 
Sbjct: 526  AKPGLQTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQV 578

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            VK  VL          + E S    L  +S   SSD     +  G   +K + ++   +V
Sbjct: 579  VKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLV 626

Query: 1372 QGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPL 1428
               V   T  G  + +L   + A +  S+LSD     P        G ++  RVL +   
Sbjct: 627  DVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQS 685

Query: 1429 SKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
               V +  K +   T    +   N S +H G ++IG +K ++ YG+FI    + L GL  
Sbjct: 686  EGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAP 744

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 745  KAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 787



 Score = 42.0 bits (97), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1184 FRVGQALRATVIGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1235

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1236 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1291

Query: 1446 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1292 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSSS 1349

Query: 1499 IETIYRA----GEKVKVKILKVDKEKRRISL 1525
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1350 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1380


>gi|355783073|gb|EHH64994.1| hypothetical protein EGM_18331 [Macaca fascicularis]
          Length = 1873

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 400/1474 (27%), Positives = 677/1474 (45%), Gaps = 165/1474 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLS--SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            G  L  ++  +     VV LS     +T S  +   +  I  D +   +     +  +  
Sbjct: 236  GQYLNCIIEKVKGNGGVVSLSVGHSEETASAGIVLPVSFIGRDNVALSVYCEQCLTFVTP 295

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P 
Sbjct: 296  FGLTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPI 350

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             L    P + +    +G + D   V    +  G    +    +   AY  +S +++ +  
Sbjct: 351  FLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNV 407

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S
Sbjct: 408  FNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGIVLTIKS 467

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
            +G +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL
Sbjct: 468  YGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTL 527

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V+SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +
Sbjct: 528  VESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERV 587

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDV 679
            ++ GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V  
Sbjct: 588  FYTGQVVKVAVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLE 647

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++LL
Sbjct: 648  KTKDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVLL 706

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D 
Sbjct: 707  CRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDK 766

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAM 855
                 S  +  GQ+V + + +V+ E  R+ LSL+ S C+  D +      L +  E++  
Sbjct: 767  FVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCALGDLATTSLLLLSQCLEELQG 826

Query: 856  LQS--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            ++S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG 
Sbjct: 827  VRSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQ 886

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ
Sbjct: 887  EVESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ 931

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
               AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+      
Sbjct: 932  ---AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPG 988

Query: 1032 STAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEIT 1072
             T   LLL ++  +   T    R                     KK +  +G +V   + 
Sbjct: 989  VTG--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTVKKHTLSIGDMVTGTVK 1046

Query: 1073 EIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK 1132
             IKP  + +    G  G IH + + DD    +    +  K+G+TVTAR+I      DMK 
Sbjct: 1047 SIKPTHVVVTLEDGIIGCIHASHILDDVPEGISPT-TKLKVGKTVTARVIGGR---DMKT 1102

Query: 1133 -SFL-----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YK 1173
              FL            ELS++PS L    T     S    E+      GQ VT ++  Y 
Sbjct: 1103 FKFLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYN 1162

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L L 
Sbjct: 1163 VVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLS 1222

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
            L             I    ++    EG++  GR+ K+     GL V       G V    
Sbjct: 1223 L-------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFH 1264

Query: 1294 LKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1353
            + +     PL  +   + V+C +L  + +V     + LSLR      SS  + +  + V+
Sbjct: 1265 VSDSYSETPLEDFVPQKVVRCYILSTADSV-----LTLSLR------SSRTNPETKSKVE 1313

Query: 1354 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-- 1411
             P   +  I+D+    +++GYV ++   G F  L   +   V L+  S     SP K+  
Sbjct: 1314 DP--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKAL 1368

Query: 1412 ----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
                 P GKL+  RVL +      VE++    D+
Sbjct: 1369 YNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1402



 Score =  291 bits (744), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/305 (48%), Positives = 211/305 (69%), Gaps = 11/305 (3%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1677
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1564 DEKPHQAMKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1623

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1624 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1681

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1797
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1682 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRG 1741

Query: 1798 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            Q G    ++QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1742 QAGASHRMLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1801

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1802 VYIDMTIKHGSQKAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1861

Query: 1917 EYVES 1921
            EYVE+
Sbjct: 1862 EYVEA 1866



 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 46/326 (14%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++RL LRP           +S  N+   + +  + G     G   
Sbjct: 327  QAVRACILCVHPRTRVVRLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 386

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 387  RLKDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 434

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +
Sbjct: 435  ---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGIVLTIKSYGMLVKV 474

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S
Sbjct: 475  GEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLVES 530

Query: 1448 E---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++ 
Sbjct: 531  KLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFY 589

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ VKV +L  +  K R+ L  K S
Sbjct: 590  TGQVVKVAVLNCEPSKERMLLSFKLS 615



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 188/463 (40%), Gaps = 57/463 (12%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLW 1136
             RLK G+  + R+  + ++D K     N+F+   FK G T   RII  S   +     L 
Sbjct: 386  FRLKDGVLAYARL--SHLSDSK-----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LA 433

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
             LS++ S++    +         D+  G  V G V  + +   L+ +   ++  +     
Sbjct: 434  LLSLRTSIIEAQYLRYH------DIEPGAVVKGIVLTIKSYGMLVKVGEQMRGLV----- 482

Query: 1197 AYEPSELQEF-----QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
               P  L +      ++++HIG  V   VL  + E K L + L+          +    D
Sbjct: 483  --PPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLVESKLPVITCYAD 540

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                    G I+  R+        G +V+   ++ G V   EL    + DP   +  GQ 
Sbjct: 541  AKPGLQTHGFII--RVKDY-----GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQV 593

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            VK  VL          + E S    L  +S   SSD     +  G   +K + ++   +V
Sbjct: 594  VKVAVL----------NCEPSKERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLV 641

Query: 1372 QGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPL 1428
               V   T  G  + +L   + A +  S+LSD     P        G ++  RVL +   
Sbjct: 642  DVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQS 700

Query: 1429 SKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
               V +  K +   T    +   N S +H G ++IG +K ++ YG+FI    + L GL  
Sbjct: 701  EGHVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAP 759

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             + +S+  V +    +  G+ V  K+  VD+EK+R+ L ++ S
Sbjct: 760  KAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLS 802



 Score = 41.6 bits (96), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G  S+ +  L   +  P K       L    +  G V  VT ++G  +
Sbjct: 1199 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-------LEEGEVAMGRVVKVTPNEGLTV 1250

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V + ++SD Y E+P ++F   K+V   +LS    +    +TL    SRT  
Sbjct: 1251 SFPFGKIGTVSIFHVSDSYSETPLEDFVPQKVVRCYILS----TADSVLTLSLRSSRTNP 1306

Query: 1446 QS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
            ++       EIN++ ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  +
Sbjct: 1307 ETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSPS 1364

Query: 1499 IETIYRA----GEKVKVKILKVDKEKRRISL 1525
             + +Y      G+ +  ++L+++ +K  + L
Sbjct: 1365 KKALYNKHLPEGKLLTARVLRLNHQKNLVEL 1395


>gi|390357065|ref|XP_789726.3| PREDICTED: protein RRP5 homolog [Strongylocentrotus purpuratus]
          Length = 1841

 Score =  405 bits (1041), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 377/1411 (26%), Positives = 643/1411 (45%), Gaps = 163/1411 (11%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD-----NEIEANED 180
            +T K +S GM +  VV E++E ++V+ LP G     +  D            NE    ED
Sbjct: 87   LTSKTLSEGMLVLAVVQEIHEYEIVLSLPNGQTAFVQITDVSSFFTQQLQELNESNGAED 146

Query: 181  NLLPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
              LP I   + VG LV C V  L   K   G R+I  SL    +   L +  ++ GM L 
Sbjct: 147  QDLPNIQDVYQVGNLVPCKVKSLGASKD--GHRRIQASLDYKEVNSELGISFIKAGMTLH 204

Query: 238  AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS----GIDVKPGLLLQGVVRSIDRTRKV 293
              V S+EDHGY +  G+     FL +    + +    G  +K G L+  +V+++    + 
Sbjct: 205  GCVSSVEDHGYTIDLGIRGTNAFLAKEEATKGAKGRKGETMKTGKLVTCLVKAVKANGRS 264

Query: 294  VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
            + L+ DP+ +  C        +   L+PG  +   V  +L N +++     + G VD  H
Sbjct: 265  IILTFDPERLKSCKATKATHTTFSSLIPGTRLDAMVTKVLSNSLIMDIFGLYKGCVDPIH 324

Query: 354  LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS-----HVKVG 408
            L++T    +    Y+  +K+ A +L+  PT++++GL+LNP        P+      +  G
Sbjct: 325  LKDT---VDELTKYDIGQKLVAVVLYNCPTTKSIGLSLNPAHHKTTFDPATDVIRDLSPG 381

Query: 409  DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC---VRV 465
            DI + + VVRV     L++ +   P  T   V  S  ++++    +K+Y   S    VR 
Sbjct: 382  DIIEAALVVRVQEKENLIVQL--NP-KTRGIVYHSHGSDDK----QKRYSPASVGEKVRC 434

Query: 466  RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            RIL F   + LA   ++ S  +      +DVKPGM+VKG + +V S G  V+    +   
Sbjct: 435  RILSFNLFDRLAIVSMRKSILDKPFLGINDVKPGMLVKGVIESVMSRGVAVKIQDRIHGF 494

Query: 526  CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             P  H+++  + KP ++F +G+E+  RVL V+   +R+ +THKKT+VKS L  L+SYA+ 
Sbjct: 495  VPRTHLADIPVQKPQERFTIGSEIELRVLLVEPAKRRVLLTHKKTMVKSSLPFLASYAQP 554

Query: 584  TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM-S 642
               +  HG +  ++  GC V FYN V+G  PR+ELG+D    P+  ++VGQV+KCR++ +
Sbjct: 555  KLGMWIHGCVVAVKDFGCIVSFYNDVKGIIPRAELGMDESSSPTDNFYVGQVLKCRVLRT 614

Query: 643  SIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
              P S+++ LS + K  R  E +  + G +V   +  V  + + V  +  G     IP  
Sbjct: 615  HSPESKKLALS-LRKDGR-KERESFEAGKIVKVKISKVKQDGLEVIQLP-GNKPAFIPKT 671

Query: 703  HLADHLEHATVMKSVIKPGYEFDQLLV--LDNESSNLLLSAKYSLINSAQ---QLPSDAS 757
            HL+DH +    + +    G   DQ L      +S   +++ K  L+N+A+   ++  D S
Sbjct: 672  HLSDHPDICDALLASYSEGDVIDQALTWSYSGKSRTCIVTCKPLLLNAARNKTEIVRDFS 731

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             +  N  + G + + +  G FV F   + G AP++   D   +D SK Y VGQ++R+ + 
Sbjct: 732  ELETNMFLIGVLRHTMSYGVFVEFPNHIVGLAPKAMMSDEFVSDTSKLYEVGQTLRAKVT 791

Query: 818  DVNSETGRITLSLKQSCCSSTDASF-----------------MQEHFLLEEKI-----AM 855
            +VN E  R  +SLK S C   DA                   +Q   ++  K+     A 
Sbjct: 792  EVNVEKKRFLVSLKTSDCFQDDAXXXXXXXXXXXXXXXXXQPLQFKHVISHKVGSLVHAT 851

Query: 856  LQSSKHNG------------------SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            ++++   G                   E K V    +GS++   V  +   G++ S    
Sbjct: 852  VRNTPGKGIICSLPHAVDAVIPQDHVHEFKHVISHKVGSLVHATVRSTPGKGIICSLPHA 911

Query: 898  SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
             D    I    + G + + G  I+A ++++  + + V LSLK   I+  +++ S  +  K
Sbjct: 912  VD--AVIPQDHVHGKSPKVGDSIEACVMNIDLSSKAVTLSLKPDTIEGCKKSKSKGKKGK 969

Query: 958  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN 1017
            K     A +D G        V +VK  +++            A            KQ LN
Sbjct: 970  KAVASLA-EDKGK-------VLMVKSEFIL------------AQTGQGKLVYLSAKQHLN 1009

Query: 1018 GQSVIA-------TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD-----VGS 1065
              SV         TV    SS   GR L  L    +      K  K  + +D     VG 
Sbjct: 1010 NFSVQKDAIKIGDTVTIGDSSFVDGRFLAALVKEDKPSKKKEKERKSAAVHDTSQKLVGQ 1069

Query: 1066 LVQAEITEIKPLELRLKF--GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII- 1122
            +V A +  +K  ++ ++   G G+ GRIH TEV+D        L   F IGQ V A++I 
Sbjct: 1070 IVDAVVKSVKESQVNIEIEGGQGY-GRIHATEVSDTMKPGSYPL-EFFTIGQKVKAKVIG 1127

Query: 1123 AKSNKPDMKKSF--------LWELSIKPSMLTVSEIGSKLLFEECDVS---IGQRVTGYV 1171
             +  K     +         L ELS + S++    + S+    E +++   IGQ VT  +
Sbjct: 1128 CRRGKRGQHLAVSHGHGALSLLELSTRKSVMEADSVPSEDQSSENEMNAFQIGQTVTCII 1187

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
             +   E   + +SR L+ ++  L+ +   S L+  +  F  G+     V+  + E  +L 
Sbjct: 1188 NRFHKEILWVHLSRSLEGKIHRLNLSKHASTLENPESYFKPGQVHRAKVVRQDNEHNMLE 1247

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
            L +               +  + T    G +V  +++KIL       VQ+   L G +  
Sbjct: 1248 LSM---------------SGCIATTFEVGSVVNCKVTKILENKAQ--VQLPYGLQGSMFA 1290

Query: 1292 TELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR-SSLDGMSSTNSSDLST 1350
            T++ +I   +PL  ++  ++ +C + E S    G     +S+R S +   +  +  DL  
Sbjct: 1291 TDIDDIYQENPLERFEHHKYHRCCISEAS---TGKHGASVSMRPSQVKKATPPSGYDL-- 1345

Query: 1351 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1410
                    +  ++DL    +V+GYV++ + KG F+ LS  L  ++LL  LS  YV+ P  
Sbjct: 1346 -------EIRTLDDLKKGQVVRGYVRHCSEKGVFVSLSSNLHGRILLKKLSAFYVKDPSA 1398

Query: 1411 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
             F +GKL++ +VLS++  S ++E++  + D+
Sbjct: 1399 VFTVGKLLSTKVLSIDKKSGKIELSSSSKDT 1429



 Score =  291 bits (744), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 199/575 (34%), Positives = 311/575 (54%), Gaps = 27/575 (4%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +V   V  +      + L   L   +  +++ D Y E+P + F   K     +       
Sbjct: 1263 VVNCKVTKILENKAQVQLPYGLQGSMFATDIDDIYQENPLERFEHHKYHRCCISEASTGK 1322

Query: 1430 KRVEVTLKTSDSRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1484
                V+++ S  + A+       EI  L +L  G +V G ++     G+F+++ ++NL G
Sbjct: 1323 HGASVSMRPSQVKKATPPSGYDLEIRTLDDLKKGQVVRGYVRHCSEKGVFVSL-SSNLHG 1381

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1544
               + +LS  +V +   ++  G+ +  K+L +DK+  +I L   SS      D +     
Sbjct: 1382 RILLKKLSAFYVKDPSAVFTVGKLLSTKVLSIDKKSGKIELS-SSSKDTGLEDPVPEDQR 1440

Query: 1545 EESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDE 1604
            +   +   +     + S  + +   + + D  S+    ++    +S +  P L+++    
Sbjct: 1441 QAGVKRKRDGTKKGKKSTEDGNDSGLGEADPLSDTEAEIITVAKKSSSDTPRLQISSGFS 1500

Query: 1605 QPDMDN--GISQNQGHTDEAKTI-----------DEKNNRHAKK--KEKEEREQEIRAAE 1649
              D       S+  G  DE+              +E   + +KK  KE+E+ +++I    
Sbjct: 1501 WGDTTTKPATSRKAGTADESDDDDDEEDEEEEEDNEPPVKTSKKDLKEEEKAQEDILYKT 1560

Query: 1650 ERLL--EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1707
            ER L   +  P TP++F+RLV SSPNSS  WI+YMAF L   D+EKAR+IAERAL+TIN 
Sbjct: 1561 ERALMDAERTPETPEDFDRLVASSPNSSLAWIRYMAFYLHSVDIEKARAIAERALKTINF 1620

Query: 1708 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1767
            REE EKLN+WVAY NLEN YG   EE VV VF+RALQ C+P KV   L+ +Y RT + + 
Sbjct: 1621 REEQEKLNVWVAYLNLENLYGT--EEEVVAVFKRALQQCEPIKVFQQLVSIYTRTSKIEQ 1678

Query: 1768 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1826
            A++L   M+K+FK    VW+     L+K  + +  + ++QR+  SL +  H+  I + A 
Sbjct: 1679 AEQLYETMVKRFKFDPDVWIGFGTFLMKHGKHDPARRLMQRSFKSLIQKDHVSVIVKFAQ 1738

Query: 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886
            LE+++  ++RG++MFE ILS YPKRTD+WSIYLD  I+ GD    R LFER I+L L  K
Sbjct: 1739 LEYRHAESERGKTMFENILSNYPKRTDIWSIYLDLTIKQGDTGTSRHLFERVINLKLSAK 1798

Query: 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            K+KF FK++L++EK  G+E  I  VKQKA++YVES
Sbjct: 1799 KVKFFFKRFLDFEKKYGDESTINSVKQKAVDYVES 1833



 Score = 68.9 bits (167), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 150/328 (45%), Gaps = 42/328 (12%)

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS-DKTVDISNDNMQTFIHEGDIVGGRI 1267
            ++ IG+ +   VL      K + L L P     + D   D+  D     +  GDI+   +
Sbjct: 334  KYDIGQKLVAVVLYNCPTTKSIGLSLNPAHHKTTFDPATDVIRD-----LSPGDIIEAAL 388

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE---GQFVKCKVLEISRTVR 1324
               +     L+VQ+ P   G V+ +   +    D    Y     G+ V+C++L  +   R
Sbjct: 389  VVRVQEKENLIVQLNPKTRGIVYHSHGSD----DKQKRYSPASVGEKVRCRILSFNLFDR 444

Query: 1325 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1384
                  +S+R S+              +D P      I D+ P M+V+G +++V S+G  
Sbjct: 445  LAI---VSMRKSI--------------LDKP---FLGINDVKPGMLVKGVIESVMSRGVA 484

Query: 1385 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1444
            + +  ++   V  ++L+D  V+ P++ F IG  +  RVL VEP  +RV +T K    +T 
Sbjct: 485  VKIQDRIHGFVPRTHLADIPVQKPQERFTIGSEIELRVLLVEPAKRRVLLTHK----KTM 540

Query: 1445 SQSEINNLSNL---HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1501
             +S +  L++     +G  + G +  V+ +G  ++  N ++ G+   +EL  D   +   
Sbjct: 541  VKSSLPFLASYAQPKLGMWIHGCVVAVKDFGCIVSFYN-DVKGIIPRAELGMDESSSPTD 599

Query: 1502 IYRAGEKVKVKILKV-DKEKRRISLGMK 1528
             +  G+ +K ++L+    E ++++L ++
Sbjct: 600  NFYVGQVLKCRVLRTHSPESKKLALSLR 627



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 170/400 (42%), Gaps = 64/400 (16%)

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYA-----SVSD-YNTQKFPQKQFLNGQSVIA 1023
            V Q V+A+V+ VKE+ + +   E     GY       VSD      +P + F  GQ V A
Sbjct: 1067 VGQIVDAVVKSVKESQVNI---EIEGGQGYGRIHATEVSDTMKPGSYPLEFFTIGQKVKA 1123

Query: 1024 TVMA---------LPSSSTAGRLLLL----LKAISETETSSSKRAKKKS---SYDVGSLV 1067
             V+          L  S   G L LL     K++ E ++  S+    ++   ++ +G  V
Sbjct: 1124 KVIGCRRGKRGQHLAVSHGHGALSLLELSTRKSVMEADSVPSEDQSSENEMNAFQIGQTV 1183

Query: 1068 QAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 1127
               I       L +       G+IH   ++   S + EN  S FK GQ   A+++ + N+
Sbjct: 1184 TCIINRFHKEILWVHLSRSLEGKIHRLNLSKHASTL-ENPESYFKPGQVHRAKVVRQDNE 1242

Query: 1128 PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHL 1187
             +M      ELS+   + T  E+GS +    C V+          K+    A + +   L
Sbjct: 1243 HNM-----LELSMSGCIATTFEVGSVV---NCKVT----------KILENKAQVQLPYGL 1284

Query: 1188 KAQLFI--LDSAYEPSELQEFQR-RFH---IGKAVTG-HVLSINKEKKLLRLVLRPFQDG 1240
            +  +F   +D  Y+ + L+ F+  ++H   I +A TG H  S++     ++    P    
Sbjct: 1285 QGSMFATDIDDIYQENPLERFEHHKYHRCCISEASTGKHGASVSMRPSQVKKATPPSGYD 1344

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
            +  +T+D         + +G +V G +        G+ V +  +L+GR+   +L    V 
Sbjct: 1345 LEIRTLDD--------LKKGQVVRGYVRHCSEK--GVFVSLSSNLHGRILLKKLSAFYVK 1394

Query: 1301 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1340
            DP + +  G+ +  KVL I +    +  +ELS  S   G+
Sbjct: 1395 DPSAVFTVGKLLSTKVLSIDKK---SGKIELSSSSKDTGL 1431



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 1449 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1508
            + + S L     +IG ++   SYG+F+   N ++VGL   + +S++ V +   +Y  G+ 
Sbjct: 727  VRDFSELETNMFLIGVLRHTMSYGVFVEFPN-HIVGLAPKAMMSDEFVSDTSKLYEVGQT 785

Query: 1509 VKVKILKVDKEKRRISLGMKSS-YFKNDA 1536
            ++ K+ +V+ EK+R  + +K+S  F++DA
Sbjct: 786  LRAKVTEVNVEKKRFLVSLKTSDCFQDDA 814


>gi|327267495|ref|XP_003218536.1| PREDICTED: protein RRP5 homolog [Anolis carolinensis]
          Length = 1816

 Score =  405 bits (1041), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 385/1479 (26%), Positives = 680/1479 (45%), Gaps = 174/1479 (11%)

Query: 54   FPRGGGHSLTQRERDEIHA------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDDL 107
            FPRGG    TQ++R E +       + D  F+A    + +K KKK +          D+ 
Sbjct: 8    FPRGG----TQKKRQEGNTPRSQTIDQDNLFQAQNEEVTRKRKKKHQDQAEPKKLKSDER 63

Query: 108  GSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---A 164
             +L  +    +L      +T ++++ GM L G V E ++ +LVI LP GL G  +     
Sbjct: 64   AALKINAKDFEL------LTAESLTDGMLLLGCVKEAHQLELVISLPNGLTGFVQVTQIC 117

Query: 165  DALDPILDNEIEANED----NLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSL 220
            DA + IL+ ++  +E     + L  +F  G +V C V+ L+  K + G+R I LS+    
Sbjct: 118  DAYNKILNTQVATDEHLEDLSSLSDLFFPGMVVRCAVVNLE--KTKAGRRSIQLSVNPKD 175

Query: 221  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVK 275
            + K L+  T++ GM+L+  + S+EDHGY++  G+P+   FLPR        + N G ++K
Sbjct: 176  VNKALNSSTLRPGMLLSGCIASVEDHGYLIDIGVPAAKAFLPRQKAQGYLQSNNKGAELK 235

Query: 276  PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
             G  L  ++  +    +++ +S     ++  +  + +  S+  L+PG++V  +V+ +  +
Sbjct: 236  IGQYLNCLIEDVKNNGRIIRISISQAEIAAAIATEEQNWSLSNLLPGLVVKAQVREVTPS 295

Query: 336  GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
            G+ L FL+ FTG VD  H  +    T     Y+  + V A IL  +PT++A+ L+L P  
Sbjct: 296  GMSLGFLSSFTGIVDFMHKNHLKGRT-----YSPGEMVKACILSNNPTTKAIRLSLRPAF 350

Query: 396  LHNRAPPSHV---KVGDIYDQSKVVRV--DRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
            L      S +   ++G I + SKV       G   +LD  S   +   +++ S ++ +  
Sbjct: 351  LQPGTQLSQLCSDRIGMIVENSKVKTFLSKTGAIFVLDDGSLGFAHQKHLSDSRLSFKP- 409

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                +K+K G+  + RI+ +  ++ +A   LK +  +     + D+ PG V++G ++ + 
Sbjct: 410  ----EKFKPGNEHKCRIIEYSLMDDMALLSLKQNIMDAPFLKYQDIHPGQVLEGTILTLK 465

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 568
             FG  V+    +K L P  H+++  + +P KK+  GA +  RVL    ++++I +T KKT
Sbjct: 466  PFGMHVKLTEYIKGLVPCLHLADVPLKQPEKKYSEGASVKCRVLVSIPEARKIVLTLKKT 525

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV SKL IL+SY +A   LITHG++    + GC V+FYN ++G  P++ELGL P   P  
Sbjct: 526  LVNSKLPILASYEDAKPGLITHGFVVCAREFGCIVKFYNDIKGLVPKNELGLPPLTPPQE 585

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM----------------KPTRVSED----DLVK 668
            +++ GQVVK  ++   P   ++ LSF +                K  ++ E+    D+  
Sbjct: 586  VFYEGQVVKVMVLKCEPEQGKVLLSFNLTDNPLDKTGRGEKTSKKQEKIYENAQVADVKI 645

Query: 669  LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
            L     G+   + PN +  Y          +P  HL+D++ H+ +    +K       ++
Sbjct: 646  LKKKDDGLDITILPNNISAY----------LPMMHLSDYVSHSKLWSHWLKEDDLLHSVV 695

Query: 729  VLDNESSNLLLSAKYSLINSAQQLPS--DASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
             L ++  +L LS K +L+ +AQ+  +  + S + P  ++ G+V NI+  G FV F   LT
Sbjct: 696  CLHSKGRHLTLSRKPTLVLAAQEEHAVKNFSDLEPGLLLTGFVKNIMPYGVFVEFPYGLT 755

Query: 787  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA-----S 841
            G AP+S   D    D    + +GQ+V + + +++ E  RI LSLK S CSS D+     S
Sbjct: 756  GMAPKSAMSDKFVTDTKDHFVIGQTVIAKVTNIDEEKQRILLSLKLSDCSSEDSVSQSFS 815

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
             + ++F   ++I  +   + + S  + +        +E  VH+    G  V     +D  
Sbjct: 816  LLLQYFKELQEIKSIMKKRDDSSVAQRLCEIKPAQKLELVVHKVETDGSAVFRGTCADGL 875

Query: 902  GFI-THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
              +  H  L G  V  G   +A +L        +D     +++    E  S++       
Sbjct: 876  TVVAAHSHLGGKNVAVGEKAEAVVL-------YIDYLKAKIYVSLREELLSSK------- 921

Query: 961  KREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQ 1019
                 K L +     AIV+ V   Y V SL      I     S +N T +F  ++   GQ
Sbjct: 922  ----PKKLTLDSQYEAIVQHVATEYSVASLIGTGQLIAIPVTSHFNDTFRFDSEKLKMGQ 977

Query: 1020 SVIATVMA--------LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEI 1071
            SV+  +          L +    G+ +  +++  ++E         K S  VG +V+  +
Sbjct: 978  SVMVVLKMVERGDYGLLLAVQAPGKRMTAIRSRRDSEALEETLPTVKHSLCVGDVVKGTV 1037

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF--SNFKIGQTVTARIIA----KS 1125
              +KP  + +       G IH +++ DD   V E  F  S  K+GQ VTAR+I     ++
Sbjct: 1038 KSVKPTHVLVAIDDHLMGSIHASQIVDD---VFEGTFPTSLLKVGQKVTARVIGGREIRT 1094

Query: 1126 NK--PDMKKSF--LW-ELSIKPSMLTVSEIGSKLLFEECDVS--------IGQRVTGYV- 1171
            ++  P     F   W ELS++PS L        +L  E D S         GQ VT +V 
Sbjct: 1095 HRYLPITHPHFTQTWPELSVRPSELKGE--NKTVLGPEDDKSEETLKLFKPGQTVTCFVK 1152

Query: 1172 -YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
             Y  + +W  + ++  ++ ++  L  + +P  L++    F  G+A+   V   +     +
Sbjct: 1153 KYNTEKKWLEVEVTPDIRGRIHELLLSLKPKILKKPGNFFKTGQALIATVTGCDTTGTKV 1212

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
             L L     G+               + +G I  G I  ++  V GL V +     G+V 
Sbjct: 1213 YLSL----SGVYS-------------LEKGTITLGCIKSVIPHV-GLQVTLPFGRTGKVS 1254

Query: 1291 FTELKNICVSDPLSGYDEGQFVKCKVL-EISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
               L +     PL  +  G+ V+C VL +  +T++      LSLR S     S N     
Sbjct: 1255 LFHLSDSYTEQPLEDFSVGKIVRCYVLSDEDKTIK------LSLRQSRVSPKSHNK---- 1304

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
              ++ P   +  ++++  + +++GYVK++T+ G    LS  +   + L  ++   V    
Sbjct: 1305 --IEDP--EIASLDNIKKDQLIRGYVKSITATGILFRLSDSVVGCIPLQRITPVCVPDHS 1360

Query: 1410 ---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
               K    G+L+  +V S+      VE++L   D+   S
Sbjct: 1361 LCAKYIHPGQLLTAKVFSINKAENLVELSLLPEDTGNPS 1399



 Score =  304 bits (779), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 252/819 (30%), Positives = 402/819 (49%), Gaps = 94/819 (11%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLF---ILDSAYE---PSEL----QEFQRRF 1210
            + +G  V G V  V     L+ I  HL   +    I+D  +E   P+ L    Q+   R 
Sbjct: 1027 LCVGDVVKGTVKSVKPTHVLVAIDDHLMGSIHASQIVDDVFEGTFPTSLLKVGQKVTARV 1086

Query: 1211 HIGKAVTGH----VLSINKEKKLLRLVLRPFQDGISDKTV-----DISNDNMQTFIHEGD 1261
              G+ +  H    +   +  +    L +RP +    +KTV     D S + ++ F   G 
Sbjct: 1087 IGGREIRTHRYLPITHPHFTQTWPELSVRPSELKGENKTVLGPEDDKSEETLKLF-KPGQ 1145

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVH--FTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
             V   + K  +    L V++ P + GR+H     LK   +  P + +  GQ        +
Sbjct: 1146 TVTCFVKKYNTEKKWLEVEVTPDIRGRIHELLLSLKPKILKKPGNFFKTGQ-------AL 1198

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
              TV G       +  SL G+ S                LEK        I  G +K+V 
Sbjct: 1199 IATVTGCDTTGTKVYLSLSGVYS----------------LEK------GTITLGCIKSVI 1236

Query: 1380 SK-GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
               G  + L      KV L +LSD Y E P ++F +GK+V   VLS E   K ++++L+ 
Sbjct: 1237 PHVGLQVTLPFGRTGKVSLFHLSDSYTEQPLEDFSVGKIVRCYVLSDE--DKTIKLSLRQ 1294

Query: 1439 SDSRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            S     S +     EI +L N+    ++ G +K + + G+   + ++ +VG   +  ++ 
Sbjct: 1295 SRVSPKSHNKIEDPEIASLDNIKKDQLIRGYVKSITATGILFRLSDS-VVGCIPLQRITP 1353

Query: 1494 ----DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1549
                DH    + I+  G+ +  K+  ++K +  + L +      N +   ++ S E +  
Sbjct: 1354 VCVPDHSLCAKYIH-PGQLLTAKVFSINKAENLVELSLLPEDTGNPSIIPELCSSETNTN 1412

Query: 1550 AIEEVGSYNRSSLLENSSVAVQDMDMESEDGGS---------------LVLAQIESRASV 1594
             ++      R+S  E   V  +     +ED  S                VL   + R  +
Sbjct: 1413 LMKTRKRKRRNSENEQQQVKPKKRVHCTEDDDSGVEIYCREEEEEEKHNVLFFYQQRKEI 1472

Query: 1595 PPLEVNLDDEQPDMDNGISQNQGHTDE----------AKTIDEKNNRHAKKKEKEEREQE 1644
              L+++      +  N ++       E           +T  +K  +  ++ EK++ E+E
Sbjct: 1473 SRLKISTSFTWEEGLNVLNTAMLKPKEQSSDSEEEDDTETTTKKQTKKQRELEKQKAEKE 1532

Query: 1645 IRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            +   E  L++ +  P+T D+F+RLV S+P+SS +W++YMAF L   ++EKAR++AERAL+
Sbjct: 1533 LSKLEAALMDPNRKPQTADDFDRLVLSNPDSSILWLQYMAFHLQATEIEKARAVAERALK 1592

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
            TI+ REE EKLN+WVA  NLEN YG   EEA++KVF+RA+QY +P KV   L  +Y  +E
Sbjct: 1593 TISFREEQEKLNVWVALLNLENMYGT--EEALMKVFERAIQYNEPLKVFQQLADIYTGSE 1650

Query: 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFIS 1822
            + K AD+L   M+K+F+    VW++    LLK+   E    ++ RAL  LP  +H+  IS
Sbjct: 1651 KYKEADDLYNTMLKRFRQEKSVWVKYSTFLLKRGLLEAAHRLLPRALKCLPEKEHVDVIS 1710

Query: 1823 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882
            + A LEF+ G ++ G+++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LS
Sbjct: 1711 KLAQLEFQFGDSEHGKAIFENTLSTYPKRTDIWSVYIDMIIKHGSQKEVRDIFERVIHLS 1770

Query: 1883 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            L  KKMKF FK+YLEYEK  G  E ++ VK  A+EYVES
Sbjct: 1771 LAAKKMKFFFKRYLEYEKKYGTAETVQVVKAAALEYVES 1809



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 137/323 (42%), Gaps = 34/323 (10%)

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            R +  G+ V   +LS N   K +RL LRP       +   + +D +   +        ++
Sbjct: 320  RTYSPGEMVKACILSNNPTTKAIRLSLRPAFLQPGTQLSQLCSDRIGMIVE-----NSKV 374

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
               LS  G + V     L G  H   L +  +S     +  G   KC+++E S       
Sbjct: 375  KTFLSKTGAIFVLDDGSL-GFAHQKHLSDSRLSFKPEKFKPGNEHKCRIIEYSLMDDMAL 433

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSL+ ++              +D P     K +D+ P  +++G +  +   G  + L
Sbjct: 434  ---LSLKQNI--------------MDAP---FLKYQDIHPGQVLEGTILTLKPFGMHVKL 473

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
            +  +   V   +L+D  ++ PEK++  G  V  RVL   P ++++ +TLK    +T   S
Sbjct: 474  TEYIKGLVPCLHLADVPLKQPEKKYSEGASVKCRVLVSIPEARKIVLTLK----KTLVNS 529

Query: 1448 EINNLSNLH---VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            ++  L++      G I  G +     +G  +   N ++ GL   +EL    +   + ++ 
Sbjct: 530  KLPILASYEDAKPGLITHGFVVCAREFGCIVKFYN-DIKGLVPKNELGLPPLTPPQEVFY 588

Query: 1505 AGEKVKVKILKVDKEKRRISLGM 1527
             G+ VKV +LK + E+ ++ L  
Sbjct: 589  EGQVVKVMVLKCEPEQGKVLLSF 611



 Score = 47.8 bits (112), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 6/153 (3%)

Query: 1444 ASQSE--INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1501
            A+Q E  + N S+L  G ++ G +K +  YG+F+      L G+   S +S+  V + + 
Sbjct: 715  AAQEEHAVKNFSDLEPGLLLTGFVKNIMPYGVFVEFP-YGLTGMAPKSAMSDKFVTDTKD 773

Query: 1502 IYRAGEKVKVKILKVDKEKRRISLGMK-SSYFKNDADNLQMSSEEESDEAIEEVGSYNRS 1560
             +  G+ V  K+  +D+EK+RI L +K S     D+ +   S   +  + ++E+ S  + 
Sbjct: 774  HFVIGQTVIAKVTNIDEEKQRILLSLKLSDCSSEDSVSQSFSLLLQYFKELQEIKSIMKK 833

Query: 1561 SLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1593
               ++SSVA +  +++      LV+ ++E+  S
Sbjct: 834  R--DDSSVAQRLCEIKPAQKLELVVHKVETDGS 864


>gi|212530734|ref|XP_002145524.1| rRNA biogenesis protein RRP5, putative [Talaromyces marneffei ATCC
            18224]
 gi|210074922|gb|EEA29009.1| rRNA biogenesis protein RRP5, putative [Talaromyces marneffei ATCC
            18224]
          Length = 1807

 Score =  404 bits (1039), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 364/1380 (26%), Positives = 660/1380 (47%), Gaps = 163/1380 (11%)

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMK----PTRVSEDDLVKLGSLVSGVVD--VVTPN 683
            +  G   K RI+          LSF  K    P    ED  V LG +V G ++  ++ P 
Sbjct: 500  FKTGSKHKARIIGYNSVDNLYLLSFEKKVIDQPYIRLED--VPLGEVVKGKIEKLLIGPE 557

Query: 684  AV--VVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 739
             +  ++  IA G + G +P+ H AD  L+H    +   + G     ++L ++ +   + L
Sbjct: 558  GIDGLILSIADGIT-GLVPSMHFADTVLQHP---EKKFREGLTVSARVLSVNLDKRQMRL 613

Query: 740  SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            + K SL+NS   +  D + I P     G + NI   G  V+F G +  F P S+  +   
Sbjct: 614  TLKKSLLNSDSAIWKDYNDIVPGKQSPGTLINIQPNGATVQFYGTVRAFLPVSEMSEAYI 673

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 859
             D S+ +  GQ V  + + V++   ++ +S K     ST +   +E F  E +  +L   
Sbjct: 674  KDPSQHFRKGQVVNVHAISVDTAAEKLVVSCKDP---STSSEAYREAFG-EIRPGVL--- 726

Query: 860  KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV 919
                     V G +     +  + + + +GV         V G       A A V  G  
Sbjct: 727  ---------VTGTVFEKSSDDLLLKLDKYGVTARLSAIHLVDGDAAKAASAFAKVRVGQK 777

Query: 920  I-QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
            +    +L+  +  RL+ ++ K+          S R+A KK       ++L V   +   V
Sbjct: 778  LSDLLVLEAKRVHRLIKVTHKS----------SLRKALKKNSLPATFEELEVGTEITGFV 827

Query: 979  E-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
              I      V  L   N  +    V D +  K P       QS+ ATV  +   +   R 
Sbjct: 828  RGITSHGIFVEFLGGLNGLLPRRLVDDEHANK-PDFGLYRSQSLTATVHQIDEDNR--RF 884

Query: 1038 LLLLKAISETETSSSKRAKKK-------------------SSYDVGSLVQAEITEIKPLE 1078
             L ++ +     S  +++K+K                   + + +G + +A I  IK  +
Sbjct: 885  TLTMRPLELPTGSRPEQSKEKPLPEDEKLANPVDESIHTAADFTIGKVTKARIASIKETQ 944

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK----- 1127
            + +       GRI ++EV D   ++ +       F++ + +  RI+    A+S++     
Sbjct: 945  INVVLADNLQGRIDVSEVFDKWDDIKDRKQPLQKFRVKEILPVRILGLHDARSHRFLPIS 1004

Query: 1128 PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHL 1187
                K  ++ELS KPS ++ +E    L  E+  V +G  + G+V  V N++  +++S ++
Sbjct: 1005 HRTSKHPVYELSAKPSFISSAE-PKPLTLEQ--VKVGSSMIGFVNNVANDYLWVSLSPNV 1061

Query: 1188 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1247
            + ++  +D + + S L + +  + +G A+   V  I+ +K  L L ++      S    D
Sbjct: 1062 RGRVRAIDLSDDLSTLADLESNYPVGSALKVRVTGIDLDKGHLDLSVK------SGSARD 1115

Query: 1248 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1307
            +S D +      G I+ GR++K+      +++Q+   L G V+ T++ +       + Y 
Sbjct: 1116 LSFDKLS----RGMILPGRVTKVTEK--QIIMQLSDTLVGAVNLTDMADDYSKIDTTIYK 1169

Query: 1308 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1367
            + + ++  ++++ ++ +  F   LSLR S           LS+ +    + +  ++ L P
Sbjct: 1170 KNEILRACIIDLDKSKKKIF---LSLRPS---------KVLSSTLPVRDREITSMDQLKP 1217

Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1427
            N +V+G+V+ V   G F+ L   + A + +S+LSD +++  + EF   +LV GR++ V+ 
Sbjct: 1218 NDVVRGFVRRVADNGLFVTLGHNVSAYIRISDLSDSFLKEWKDEFQTDQLVKGRIILVDS 1277

Query: 1428 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLC 1486
             + R++++LK S      ++ I  + +L VG +V G++++VE +G FI I+ + N+ GLC
Sbjct: 1278 ENNRLQMSLKESVLDPNFKTPIT-IRDLKVGQVVTGKVRKVEDFGAFIVIDGSANVSGLC 1336

Query: 1487 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
            H S+++E +V +   ++ AG+ VK KILK+D  + ++S G+K+SYF  D +        +
Sbjct: 1337 HRSQMAEQNVQDARKLFEAGDIVKAKILKIDANQGKVSFGLKASYF-GDEEGSDSEGGSD 1395

Query: 1547 SDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQP 1606
             D +++E G       L++   + +DM +   D       + ES          +   Q 
Sbjct: 1396 GDLSMDEAGGVE----LDSDEDSDEDMSVGGVDIEDASEDEDESSDDEEDASATVKRSQS 1451

Query: 1607 DM------------DNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1654
            D             D G+S     TD     DE +N     K+K  R+ EI+  +   L+
Sbjct: 1452 DKGGLDVGGFDWTGDAGLSSTSKLTDRQAVGDEASN-----KKKRIRKPEIQVDQTGDLD 1506

Query: 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1714
               P++  ++ERL+   P+SS +W++YMAF L + +V KAR I +RA+++I+I ++ EKL
Sbjct: 1507 ARGPQSVADYERLLLGEPDSSLLWLQYMAFQLELGEVVKAREIGQRAIRSISIGQDTEKL 1566

Query: 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1774
            NIWVA  NLEN YG   ++++ +VF+ A QY D ++++  L+ +Y ++ +N+ ADEL   
Sbjct: 1567 NIWVALLNLENTYGT--DDSLEEVFKNACQYNDTQEIYERLISIYIQSGKNEKADELFKT 1624

Query: 1775 MIKKFKHSCKVWLRRVQRLL---KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK- 1830
             +KK  +S + +       L       +  + ++ RAL SLP + H+    +   LEF+ 
Sbjct: 1625 ALKKKVYSGQKFFVNYATFLFDTLSSPDRGRDLLPRALQSLPPNTHVDTTCKFIQLEFRS 1684

Query: 1831 -NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS------- 1882
             +G  +RGR++FEG+LS +PKRTDLW+I LD E++ GD D +R +F+R + +S       
Sbjct: 1685 PSGDVERGRTLFEGLLSSFPKRTDLWNILLDLEMKQGDADQVRSVFQRVLGISTAPKTQS 1744

Query: 1883 -----------------LPPKKMKFLFKKYLEYEKSV----GEEERIEYVKQKAMEYVES 1921
                             L PKK +F FKK+L++E+ +    G E+ +E VK +A +YV S
Sbjct: 1745 KKKGAIPAPSSTEAQKKLKPKKARFFFKKWLDFEEKLAAEGGNEKMVEEVKARAADYVNS 1804



 Score =  209 bits (532), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 323/1407 (22%), Positives = 587/1407 (41%), Gaps = 170/1407 (12%)

Query: 54   FPRGGGHSLTQRERDEIH--AEVDAEFEAVERG--------------------------- 84
            FPRGGG  LT  ER +I   A  D  FE    G                           
Sbjct: 64   FPRGGGSVLTPLERKQIQIQATRDVLFEQKRSGKSAEALDDDVSDADVDMQDEGKKTTAT 123

Query: 85   ---LHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVV 141
                 K   KK + TE+K  E V   G                 ++ K ++ G  + G V
Sbjct: 124  TKKSRKSKNKKSRDTEKKTKEGVRVEG-----------------LSFKRLTIGTMVLGQV 166

Query: 142  AEVNEKDLVICLPGGLRG---LARAADALDPILD---------NEIEANEDNLLPT-IFH 188
              +N  D+ + LP  L G   L   ++  D  ++         +++E+ ED+L P+  F+
Sbjct: 167  TSINSHDIGLALPNNLTGYVPLTAISETFDKKIEKVLNAEDDGDDVESEEDSLDPSDYFY 226

Query: 189  VGQLVSCIVLQLDDDKKEIG--KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 246
            +GQ +   V    +   + G  K+KI L+L       GL+   + EG+++ A V S+EDH
Sbjct: 227  IGQYLRAYVTSTGNSSADPGANKKKIELTLDPRQTNSGLAESDLVEGVMVQASVTSVEDH 286

Query: 247  GYILHFGL-PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
            G ++  GL     GF+     A     +VK G +L  VV  ++ +R +  LSS     + 
Sbjct: 287  GCVMDIGLGKKLKGFM-----ASTDDSNVKEGAVLLCVVTGVNASRTIFQLSSKLQAAAS 341

Query: 306  CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 365
              +      +I   +PG      + S+ E G++   +     T+D  H      + +   
Sbjct: 342  PKSVLKSAPTIQAFLPGTAAEMLLTSVTETGLVGKIMGLLDATIDFVHSGANSGSFDLTT 401

Query: 366  DYNQHKKVNARILFVDPTSRA--VGLTLNPYLLHNRAPPSHVK-----VGDIYDQSKVVR 418
             Y    K+ ARI    P +    VG ++   +L  +   S  +     +G I D  KV  
Sbjct: 402  KYQLGAKIKARITCTFPAAEPFKVGASILENVLDWKRTLSTQEEDSPSIGTILD-VKVAT 460

Query: 419  VDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
            V+ GLGL  +  S       +++ +SD   E +   +  +K GS  + RI+G+  ++ L 
Sbjct: 461  VEPGLGLYAEFGSPKHIGFVHISRVSDGTVETISAEQGPFKTGSKHKARIIGYNSVDNLY 520

Query: 478  TGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMS 532
                +    +       DV  G VVKGK+    I  +   G I+    G+  L P  H +
Sbjct: 521  LLSFEKKVIDQPYIRLEDVPLGEVVKGKIEKLLIGPEGIDGLILSIADGITGLVPSMHFA 580

Query: 533  EFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
            +  +  P KKF+ G  +  RVL V    +++ +T KK+L+ S  AI   Y +      + 
Sbjct: 581  DTVLQHPEKKFREGLTVSARVLSVNLDKRQMRLTLKKSLLNSDSAIWKDYNDIVPGKQSP 640

Query: 591  GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
            G +  I+ +G  V+FY  V+ F P SE+      +PS  +  GQVV    +S   A+ ++
Sbjct: 641  GTLINIQPNGATVQFYGTVRAFLPVSEMSEAYIKDPSQHFRKGQVVNVHAISVDTAAEKL 700

Query: 651  NLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
             +S    P+  SE        ++ G LV+G V   + + +++ +   G +   +   HL 
Sbjct: 701  VVS-CKDPSTSSEAYREAFGEIRPGVLVTGTVFEKSSDDLLLKLDKYGVT-ARLSAIHLV 758

Query: 706  D-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIH 760
            D     A    + ++ G +   LLVL+ +  + L+  + K SL  + ++  LP+    + 
Sbjct: 759  DGDAAKAASAFAKVRVGQKLSDLLVLEAKRVHRLIKVTHKSSLRKALKKNSLPATFEELE 818

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK-TYYVGQSVRSNILDV 819
              + + G+V  I   G FV FLG L G  PR + VD + A+      Y  QS+ + +  +
Sbjct: 819  VGTEITGFVRGITSHGIFVEFLGGLNGLLPR-RLVDDEHANKPDFGLYRSQSLTATVHQI 877

Query: 820  NSETGRITLSLK--QSCCSSTDASFMQEHFLLEEKIAM-LQSSKHNGSELKWVEGFIIGS 876
            + +  R TL+++  +    S      ++    +EK+A  +  S H  ++      F IG 
Sbjct: 878  DEDNRRFTLTMRPLELPTGSRPEQSKEKPLPEDEKLANPVDESIHTAAD------FTIGK 931

Query: 877  VIEGKVHE----------SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILD 926
            V + ++            +++    +   E  D +  I   +          ++   IL 
Sbjct: 932  VTKARIASIKETQINVVLADNLQGRIDVSEVFDKWDDIKDRKQPLQKFRVKEILPVRILG 991

Query: 927  V--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN 984
            +  A++ R + +S +T     +  +         + K    + + V  ++   V  V  +
Sbjct: 992  LHDARSHRFLPISHRTSKHPVYELSAKPSFISSAEPKPLTLEQVKVGSSMIGFVNNVAND 1051

Query: 985  YLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK 1042
            YL +SL P     +    +S D +T    +  +  G ++   V  +      G L L +K
Sbjct: 1052 YLWVSLSPNVRGRVRAIDLSDDLSTLADLESNYPVGSALKVRVTGI--DLDKGHLDLSVK 1109

Query: 1043 AISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 1102
            + S  + S  K ++       G ++   +T++   ++ ++      G +++T++ DD S 
Sbjct: 1110 SGSARDLSFDKLSR-------GMILPGRVTKVTEKQIIMQLSDTLVGAVNLTDMADDYSK 1162

Query: 1103 VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS-------EIGSKLL 1155
            +   +   +K  + + A II        KK F   LS++PS +  S       EI S   
Sbjct: 1163 IDTTI---YKKNEILRACIIDLDKS--KKKIF---LSLRPSKVLSSTLPVRDREITSMDQ 1214

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             +  DV     V G+V +V +    +T+  ++ A + I D     S L+E++  F   + 
Sbjct: 1215 LKPNDV-----VRGFVRRVADNGLFVTLGHNVSAYIRISD--LSDSFLKEWKDEFQTDQL 1267

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI-----HEGDIVGGRISKI 1270
            V G ++ ++ E   L++ L+            + + N +T I       G +V G++ K+
Sbjct: 1268 VKGRIILVDSENNRLQMSLKE----------SVLDPNFKTPITIRDLKVGQVVTGKVRKV 1317

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI-SRTVRGTFHV 1329
                  +V+    ++ G  H +++    V D    ++ G  VK K+L+I +   + +F +
Sbjct: 1318 EDFGAFIVIDGSANVSGLCHRSQMAEQNVQDARKLFEAGDIVKAKILKIDANQGKVSFGL 1377

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPG 1356
            + S     +G  S   SD    +D  G
Sbjct: 1378 KASYFGDEEGSDSEGGSDGDLSMDEAG 1404


>gi|326471469|gb|EGD95478.1| rRNA biogenesis protein RRP5 [Trichophyton tonsurans CBS 112818]
          Length = 1827

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 385/1399 (27%), Positives = 653/1399 (46%), Gaps = 171/1399 (12%)

Query: 610  QGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            QGF   S L        SSM   Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 508  QGFVHLSRLADGRVDSISSMEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 564

Query: 667  VKL-----GSLVSGVVD--VVTPNAVVVYVIA-KGYSKGTIPTEHLAD-HLEHATVMKSV 717
             +L     GS+V G ++  ++ P  +   +++      G +P  H+AD  L+H    +  
Sbjct: 565  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDNISGLVPEMHMADTKLQHP---EKK 621

Query: 718  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 622  FREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 681

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 682  AIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLVVSCKDPSTV 741

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            + D    Q  F   EK+                     G V+ G V E +   +++  ++
Sbjct: 742  TAD---YQSAF---EKVHP-------------------GLVVSGTVFEKSSDDLLIKLQD 776

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 946
               +    ++H   G++ +  S               +  V K+ RL++++ K       
Sbjct: 777  SGLIARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKVKKSHRLIEVTNKATL---- 832

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 1005
                  ++A  + R     +D+     V  +V+ I+ E   V  L      I    V D 
Sbjct: 833  ------KKAAAEGRLPAKFEDIKHGLKVTGVVKNIIPEGIFVEFLDNLTGLIPKRLVDDD 886

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDV- 1063
            +  + P   +   Q + ATV A+   S   R LL LK +S+  E S S  A +K +  V 
Sbjct: 887  HASR-PDFGYSRFQVISATVCAVQEDSD--RFLLSLKPVSKPKEQSDSNPASEKKAPAVV 943

Query: 1064 -----------------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN 1106
                             G + +A+IT +K  +L +       GRI I+E+ D   ++ + 
Sbjct: 944  LNNPIDEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDR 1003

Query: 1107 L--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1155
                 +F     +  R++   +  + K         K  ++ELS K S L  SE    L 
Sbjct: 1004 KRPLKSFHSKDILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEF-KPLH 1062

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             E+  + +G R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A
Sbjct: 1063 LEQ--LKVGDRHIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSA 1120

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   V+ I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI     
Sbjct: 1121 LQVAVIGIDAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR-- 1169

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
             ++VQI  ++ G +   ++     +D  +  +   F K + L +         V++ + +
Sbjct: 1170 QVLVQINDNVVGAISLIDM-----ADDYTKVNPTNFHKNEALRVCV-------VDVDIPN 1217

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
                 S   S  LS+ +      +  I++L    IV+G+++ V + G F+ L   + A +
Sbjct: 1218 KKISFSVRPSKVLSSSLPVVDPEITSIDNLKVGQIVRGFIRRVDNIGVFVTLGHDVTAYI 1277

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1455
             +S+LSD +++  + EF + +LV GR+  V+  + ++++TLK S      +     L  L
Sbjct: 1278 RVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLKKSVLDPNYKPPFT-LKEL 1336

Query: 1456 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
             VG IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y   + VK K+L
Sbjct: 1337 KVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVL 1396

Query: 1515 KVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE--AIEEVGSYNRSSLLENSSVAVQD 1572
            KVD EK +I+LG+K+SYF++         EEESD   + +E G      +L+    +  D
Sbjct: 1397 KVDLEKGQIALGLKASYFRD-------LPEEESDANCSDDEAGGI----MLDAGGDSDDD 1445

Query: 1573 MDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN------QGHTDEAKTID 1626
            + M   D       + E            +        G+  +       G  D+ +  D
Sbjct: 1446 VSMGGVDLEGEDDEEGEEEEDSDEDIEMENAPDSTKKGGLVTSGFDWTGDGDKDQNEAAD 1505

Query: 1627 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1686
            E        K K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W+KYMAF L
Sbjct: 1506 ESAEDDGATKRKKRRKAEIQVDRTGDLDANGPQSVADYERLLLGEPDSSLLWLKYMAFQL 1565

Query: 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1746
             + +V+KAR IA+RAL+T++I ++ EKLN+WVA  NLEN +GN  ++ + +VF+ A +Y 
Sbjct: 1566 ELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLNLENTFGN--DDTLDEVFKSACEYN 1623

Query: 1747 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA--- 1803
            D  +++  +  ++ ++ + + ADEL    +KK   S   +       L    E  Q    
Sbjct: 1624 DAHEIYDRMTSIFIQSGKAEKADELFQTALKKKVSSTPDFFLNYANFLFDTMEAPQRGRD 1683

Query: 1804 VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861
            ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD 
Sbjct: 1684 LLHRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERGRTVFEGLLSSFPKRIDLWNVLLDL 1743

Query: 1862 EIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLFKKYLEYEKSV--- 1902
            EI++GD + +R LFER + +                 L  K+ KFLFKK+L +E+ +   
Sbjct: 1744 EIKVGDEEQVRRLFERVLGIGHGIVAADGTKGGPKKKLKEKQAKFLFKKWLAFEEKIAPE 1803

Query: 1903 GEEERIEYVKQKAMEYVES 1921
            G+ + ++ VK +A +YV S
Sbjct: 1804 GDTKMVDEVKARAADYVRS 1822



 Score =  233 bits (593), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 341/1438 (23%), Positives = 596/1438 (41%), Gaps = 174/1438 (12%)

Query: 3    ASSRKSQKKSSKDGPKFNKAS---------------KNQFKNSKKQINDAVEAQDLALPP 47
            +SS   +KK+  D  + N AS               K   K SKK  +   +A  +++  
Sbjct: 14   SSSSAPKKKAKVDAEELNGASKLKKKSKEPKEQKEQKEAVKASKKDTSTVSKAAPISMLR 73

Query: 48   DDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE-------------------AVE--RG 84
            D+  P FPRGG + LT  ER +I   A  D  FE                   A E  + 
Sbjct: 74   DEQ-PAFPRGGNNVLTPLERKQIQIQATKDVLFEQKGKNGAEFANSDDEGSLGAAEDKKD 132

Query: 85   LHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEV 144
               K+KK+K KT +                 + K       +T K ++ G ++ G V+ +
Sbjct: 133  AGTKSKKRKAKTSKTKEAPA-----------AAKQGVKVESLTYKRLAVGSRILGQVSSI 181

Query: 145  NEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL-------------------LPT 185
               D+ + LP  L G     +A+   L  ++EA   +                    L  
Sbjct: 182  GLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEDDDDDDDDDDDDLELKN 240

Query: 186  IFHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 242
               VGQ +   V      +DDKK   K+ I LS+       GL+   +     + A V S
Sbjct: 241  YVKVGQYLRAAVTATTRNEDDKKVKNKKHIELSIEPHAANSGLTKADMVVNATVQASVIS 300

Query: 243  IEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLS 297
            +EDHG ++  GL      GF+    L   +GID   VK G +   +V   + +  V+ LS
Sbjct: 301  VEDHGLVMDLGLEENEAKGFISSRELP--AGIDISTVKEGSVFLCIVTGQNASGTVIKLS 358

Query: 298  SDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
            +D  + +            +I+  +PG      +  +   G++   +      VD+ H  
Sbjct: 359  ADLSSAASVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVIHSG 418

Query: 356  NTFPTTNWKNDYNQHKKVNARILFVDPTSRAV--GLTLNPYLLHNRAPPSHVKVGD---- 409
             +    +    Y+   K+  R++   P+S  V  G ++   +L      + V  GD    
Sbjct: 419  ASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGGDDDLP 478

Query: 410  ----IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKEGSC 462
                I  + KV  VD  LGL + + ST      +V +S +A+   + +  +E  YK GS 
Sbjct: 479  LISDIIPEVKVTYVDTSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSMEGPYKVGST 536

Query: 463  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQ 517
               RI+GF  ++ L    L+    E   F   DV  G VVKGK+    I  +   G IV 
Sbjct: 537  HEGRIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVS 596

Query: 518  FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLA 575
                +  L P  HM++ ++  P KKF+ G ++  R+L V  + +++ +T KK+L+ S  A
Sbjct: 597  LTDNISGLVPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSA 656

Query: 576  ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
                Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQV
Sbjct: 657  PWKDYESISAGSRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQV 716

Query: 636  VKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVI 690
            V    ++    + R+ +S    P+ V+ D     + V  G +VSG V   + + +++ + 
Sbjct: 717  VNVHALTVDAENERLVVS-CKDPSTVTADYQSAFEKVHPGLVVSGTVFEKSSDDLLIKLQ 775

Query: 691  AKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLIN 747
              G     + + H++D      T   + I+ G + D LLV   + S+ L+  + K +L  
Sbjct: 776  DSGLI-ARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKVKKSHRLIEVTNKATLKK 834

Query: 748  SAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
            +A +  LP+    I     V G V NII  G FV FL  LTG  P+    D   +     
Sbjct: 835  AAAEGRLPAKFEDIKHGLKVTGVVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHASRPDFG 894

Query: 806  YYVGQSVRSNILDVNSETGRITLSLK-----QSCCSSTDASFMQEHFLLEEKIAMLQSSK 860
            Y   Q + + +  V  ++ R  LSLK     +    S  AS        E+K   +  + 
Sbjct: 895  YSRFQVISATVCAVQEDSDRFLLSLKPVSKPKEQSDSNPAS--------EKKAPAVVLNN 946

Query: 861  HNGSELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHSDVYGFITHHQLA 910
                ELK +E  ++G + + K+    D    VV        +   E  D +  I   +  
Sbjct: 947  PIDEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRP 1006

Query: 911  GATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
              +  S  ++   +L +  A+  + + +S ++  +  +  +      Q  + K    + L
Sbjct: 1007 LKSFHSKDILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEFKPLHLEQL 1066

Query: 969  GVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVM 1026
             V       V  + E+ L L++ P     +    +S D + +   QK F  G ++   V+
Sbjct: 1067 KVGDRHIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVI 1126

Query: 1027 ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIG 1086
             + +     RL L  +  S  +T +     K      G ++   +T+I   ++ ++    
Sbjct: 1127 GIDAEKN--RLDLSARIGSSAKTLTVADLSK------GMILVGRVTKITDRQVLVQINDN 1178

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1146
              G I + ++ DD + V     +NF   + +   ++   + P+ K SF    S++PS + 
Sbjct: 1179 VVGAISLIDMADDYTKVNP---TNFHKNEALRVCVV-DVDIPNKKISF----SVRPSKVL 1230

Query: 1147 VSEIG--SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1204
             S +      +    ++ +GQ V G++ +VDN    +T+   + A  +I  S    S L+
Sbjct: 1231 SSSLPVVDPEITSIDNLKVGQIVRGFIRRVDNIGVFVTLGHDVTA--YIRVSDLSDSFLK 1288

Query: 1205 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GD 1261
            E++  F + + V G +  ++KE   +++ L+        K+V   N      + E   G 
Sbjct: 1289 EWKDEFQVDQLVQGRLTVVDKENNKIQMTLK--------KSVLDPNYKPPFTLKELKVGQ 1340

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            IV G++ K+      + +    +L G  H +E+    V D    Y++   VK KVL++
Sbjct: 1341 IVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKV 1398


>gi|348579013|ref|XP_003475276.1| PREDICTED: protein RRP5 homolog [Cavia porcellus]
          Length = 1841

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 383/1443 (26%), Positives = 672/1443 (46%), Gaps = 149/1443 (10%)

Query: 80   AVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANK----ITLKNISAGM 135
            A+E    +   +K  K+E+    +V+  G+LF   I    P+  ++     T K++  GM
Sbjct: 3    ALEESFPRGGSRKIHKSEKSHQPSVEH-GNLFDISIEEDPPKGKDQNGPAKTKKSLCKGM 61

Query: 136  KLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--NEIEANEDNL-----LPTIFH 188
            ++ G V EVNE +LVI LP GL+G  +  +  D      NE  A E+ L     LP +F 
Sbjct: 62   RILGCVKEVNELELVIGLPNGLQGFVQVTEICDAYTQKLNEQVAQEEPLKDLLRLPELFS 121

Query: 189  VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 248
            +G LV C+V  +     E GK+ + LSL    + + LS E ++ GM+LT  V S+EDHGY
Sbjct: 122  LGMLVRCVVSSVSIT--EQGKKSVKLSLNPRNVNRVLSAEALKPGMLLTGTVSSLEDHGY 179

Query: 249  ILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV 303
            ++  G+     FLP+    E     N G  +K G  L  ++  +     VV LS +   +
Sbjct: 180  LVDIGVEGTRAFLPQQKAQEYIRQKNKGAKLKVGQYLNCIIEEMKGNGGVVGLSIEQSEI 239

Query: 304  SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 363
            S  +    +  +++ L+PG+++  +VQ + + G+ L+F T+FTG VD  HL         
Sbjct: 240  STAIATQEQNWNLNNLLPGLVLQAQVQKVTQFGLTLNFFTFFTGLVDFMHLD-----PKK 294

Query: 364  KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRVD 420
               Y  ++ V A +L V P +RAV L+L P  L    P + +    +G +     V    
Sbjct: 295  VGMYFSNQTVRACVLCVHPRTRAVRLSLRPIFLQPGRPLTRLSCQHLGAVLQDVPVQGFF 354

Query: 421  RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
               G    +    +   AY  +S +++ +     + +K G+  + RI+ +  ++ LA   
Sbjct: 355  NKAGATFRLKDGAL---AYARLSHLSDSKNGFRPEAFKPGNTHKCRIIDYSQMDELALLS 411

Query: 481  LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
            L+ S  E     + D+K G V+KG V+ +  FG +V+    ++ L P  H+++  +  P 
Sbjct: 412  LRTSVIEAQYLKYHDIKTGAVIKGTVMTIKPFGMLVKVGEQMRGLVPAMHLADIPMKNPE 471

Query: 541  KKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            KK+ VG E+  RVL    ++K++ +T KKTLV SKL +++ Y +A   L THG I +++ 
Sbjct: 472  KKYHVGDEVKCRVLLCDPEAKKLILTLKKTLVTSKLPVITCYEDAKPGLQTHGAILRVKD 531

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-- 656
            +GC V+FYN VQG  P+ EL      +P  +++VGQVVK  +++  P+  R+ LSF +  
Sbjct: 532  YGCIVKFYNDVQGLVPKHELSDQHIPDPEKVFYVGQVVKVAVLNCEPSRERMLLSFKLLS 591

Query: 657  KPTRVS--------EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
             P R +            + +G LV   +   T + + V V+        +PT HL+DH+
Sbjct: 592  DPERKNGSVERRQKSKKAISVGQLVDVKILEKTKDGLHVAVLPHNIP-AFLPTPHLSDHV 650

Query: 709  EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVH 766
             +  ++   ++ G    ++L L      +LL  K +L+++ +  Q+P   S I P  ++ 
Sbjct: 651  TNGPLLYHWLQAGDTLHRVLCLSQSEKQVLLCRKPALVSAVEDGQVPKSFSEIQPGMLLV 710

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
            G+V +I + G FV+F   L+G AP++   D    + S  +  GQ+V   +  V+ E  R+
Sbjct: 711  GFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTNPSDHFVEGQTVVVKVTKVDEEKQRM 770

Query: 827  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE----LKWVEGFIIGSVIEGKV 882
             +SL+ S C    +S      L +    +       GS+    ++ +     G V++  V
Sbjct: 771  LVSLRLSDCRLGSSSSTSLLLLSQCLEELHGVRSLMGSQDSVLIQTLAKMTPGMVLDLVV 830

Query: 883  HES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
             E   D  VV+S     D+    + +  AG  VE+G   +A IL V   E  V +SL   
Sbjct: 831  QEVLEDGSVVLSGGPVPDLVLRASRYHRAGQEVEAGQKRKAVILHVDMLELEVHVSLLKE 890

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
             +        NR+A+K K+ R+            A V+ ++E++ + SL E  H + ++ 
Sbjct: 891  LV--------NRKARKLKKGRK----------YQATVQHLEESFALASLVETGHLVAFSL 932

Query: 1002 VSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKR------ 1054
             S  N T +F  ++   GQ V   V+        G LL ++   ++     +++      
Sbjct: 933  ASHLNDTFRFDSEKLQVGQGV-CLVLKTTEPGVTGLLLAVVGPAAQRVLRQTRKDSETVD 991

Query: 1055 ------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSN 1102
                         +++ +  +G  V   +  +KP  + +    G  G IH + + DD   
Sbjct: 992  DDEEGDPALVTGLRRQHTLALGDTVTGTVKSVKPTHVVVTLEGGLVGCIHASHILDD--- 1048

Query: 1103 VVENLF--SNFKIGQTVTARIIA----KSNK--PDMKKSFLW---ELSIKPSML----TV 1147
            VVE     +  K+GQ+VTAR+I     K++K  P     F+    ELSI+PS L    T 
Sbjct: 1049 VVEGSMPTATLKVGQSVTARVIGGRDVKTSKFLPISHPRFIRTIPELSIRPSELEQGHTA 1108

Query: 1148 SEIGSKLLFEECD-VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1204
             +  S    E+ +    GQ VT ++  Y V  +W  + I+  ++ ++ +L ++     L+
Sbjct: 1109 LDTYSASPGEKIEHYQAGQTVTCFLKKYNVVKKWLEVDIAPDIRGRIPLLLASLSFKVLK 1168

Query: 1205 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG 1264
               ++F IG+A+   V+  +  +  L L L             I    ++    +G++  
Sbjct: 1169 HPDKKFQIGQALRATVVGPDSSRAFLCLSL-------------IGPHKLE----KGEVAM 1211

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
            GR+ K+ +   GL V       G V    + +     PL  +   + V+C VL  +  + 
Sbjct: 1212 GRVVKV-TPHKGLTVAFPFGRTGTVSVFHMSDSYSETPLEDFMPQKVVRCYVLSTADHM- 1269

Query: 1325 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1384
                + LSLR     +S TN  +  + V+ P   ++ ++D+    +++GYV+++   G  
Sbjct: 1270 ----LTLSLR-----LSRTN-PETKSKVEDP--EIDSMQDVKAGQLLRGYVQSIEPSGVL 1317

Query: 1385 IMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
            + L   +   V L+  S     SP K+       P G+L+  +VL +      VE++   
Sbjct: 1318 LGLGPSV---VGLAQFSHVSQSSPPKKDLYRKYLPEGRLLTAKVLRLNHNKNLVELSFLP 1374

Query: 1439 SDS 1441
            +D+
Sbjct: 1375 TDT 1377



 Score =  288 bits (737), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/328 (45%), Positives = 222/328 (67%), Gaps = 6/328 (1%)

Query: 1598 EVNLDDEQPDMDNGISQNQGHTDEA--KTIDEKNNRHAKKKEKEEREQEIRAAEERLLE- 1654
            +V LD   P +      +    DE   + + +K ++  ++ EK++ E+E+   EE L++ 
Sbjct: 1509 DVGLDSLTPALPPRGESSDSEEDEKPHQAMHKKKSKKERELEKQQSEKELSRIEEALMDP 1568

Query: 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1714
            +  P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKL
Sbjct: 1569 RRQPGSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL 1628

Query: 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1774
            N+WVA  NLEN YG+P  E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +
Sbjct: 1629 NVWVALLNLENMYGSP--ESLSKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNR 1686

Query: 1775 MIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833
            M+K+F+    VW++    LL++ Q G  + V+QRAL  LP  +H+  I++ A LEF+ G 
Sbjct: 1687 MLKRFRQEKAVWVKYGAFLLRRSQAGACRRVLQRALECLPTKEHMDVITKFAQLEFQLGD 1746

Query: 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1893
            A+R +++FE +LS YPKRTD+WS+++D  I+      IR LFER I LSL PKKMKF FK
Sbjct: 1747 AERAKAIFENMLSTYPKRTDVWSVFIDLTIKHSSQKEIRDLFERVIHLSLAPKKMKFFFK 1806

Query: 1894 KYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            +YL+YEK  G E+ +  VK KA+EYVE+
Sbjct: 1807 RYLDYEKQHGTEKDVLAVKAKALEYVEA 1834



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 140/317 (44%), Gaps = 32/317 (10%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
            + V   VL ++   + +RL LRP           +S  ++   + +  + G       + 
Sbjct: 302  QTVRACVLCVHPRTRAVRLSLRPIFLQPGRPLTRLSCQHLGAVLQDVPVQG-----FFNK 356

Query: 1274 VGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
             G    ++ G   Y R+ H ++ KN    +    +  G   KC++++ S+         L
Sbjct: 357  AGATFRLKDGALAYARLSHLSDSKNGFRPE---AFKPGNTHKCRIIDYSQMDELAL---L 410

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
            SLR+S+                   ++L K  D+    +++G V  +   G  + +  ++
Sbjct: 411  SLRTSV----------------IEAQYL-KYHDIKTGAVIKGTVMTIKPFGMLVKVGEQM 453

Query: 1392 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1451
               V   +L+D  +++PEK++ +G  V  RVL  +P +K++ +TLK +   T+    I  
Sbjct: 454  RGLVPAMHLADIPMKNPEKKYHVGDEVKCRVLLCDPEAKKLILTLKKTLV-TSKLPVITC 512

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
              +   G    G I RV+ YG  +   N ++ GL    ELS+ H+ + E ++  G+ VKV
Sbjct: 513  YEDAKPGLQTHGAILRVKDYGCIVKFYN-DVQGLVPKHELSDQHIPDPEKVFYVGQVVKV 571

Query: 1512 KILKVDKEKRRISLGMK 1528
             +L  +  + R+ L  K
Sbjct: 572  AVLNCEPSRERMLLSFK 588



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 140/686 (20%), Positives = 256/686 (37%), Gaps = 91/686 (13%)

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETG 824
            HGY+ +I   G           F P+ KA +  R  +      VGQ +   I ++    G
Sbjct: 177  HGYLVDIGVEGT--------RAFLPQQKAQEYIRQKNKGAKLKVGQYLNCIIEEMKGNGG 228

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW-VEGFIIGSVIEGKVH 883
             + LS++QS  S+  A+                       E  W +   + G V++ +V 
Sbjct: 229  VVGLSIEQSEISTAIAT----------------------QEQNWNLNNLLPGLVLQAQVQ 266

Query: 884  ESNDFGVVVSFEEHSDVYGFITHHQLAGATVE---SGSVIQAAILDVAKAERLVDLSLKT 940
            +   FG+ ++F   +   G +    L    V    S   ++A +L V    R V LSL+ 
Sbjct: 267  KVTQFGLTLNF--FTFFTGLVDFMHLDPKKVGMYFSNQTVRACVLCVHPRTRAVRLSLRP 324

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
            +F+   R              R + + LG       +     +      L   + ++ YA
Sbjct: 325  IFLQPGRPLT-----------RLSCQHLGAVLQDVPVQGFFNKAGATFRL--KDGALAYA 371

Query: 1001 SVSDYNTQK--FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK 1058
             +S  +  K  F  + F  G +    ++     S    L LL    S  E    K    K
Sbjct: 372  RLSHLSDSKNGFRPEAFKPGNTHKCRII---DYSQMDELALLSLRTSVIEAQYLKYHDIK 428

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
            +    G++++  +  IKP  + +K G    G +    + D     ++N    + +G  V 
Sbjct: 429  T----GAVIKGTVMTIKPFGMLVKVGEQMRGLVPAMHLADIP---MKNPEKKYHVGDEVK 481

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC--DVSIGQRVTGYVYKVDN 1176
             R++     P+ KK  L   ++K +++T     SKL    C  D   G +  G + +V +
Sbjct: 482  CRVLL--CDPEAKKLIL---TLKKTLVT-----SKLPVITCYEDAKPGLQTHGAILRVKD 531

Query: 1177 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
               ++     +  Q  +         + + ++ F++G+ V   VL+    ++ + L  + 
Sbjct: 532  YGCIVKFYNDV--QGLVPKHELSDQHIPDPEKVFYVGQVVKVAVLNCEPSRERMLLSFKL 589

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
              D              +  I  G +V  +I  +     GL V + PH           N
Sbjct: 590  LSDPERKNGSVERRQKSKKAISVGQLVDVKI--LEKTKDGLHVAVLPH-----------N 636

Query: 1297 ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPG 1356
            I    P     +       +L        T H  L L  S   +       L + V+  G
Sbjct: 637  IPAFLPTPHLSD-HVTNGPLLYHWLQAGDTLHRVLCLSQSEKQVLLCRKPALVSAVED-G 694

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            +  +   ++ P M++ G+VK++   G F+     L      + +SD +V +P   F  G+
Sbjct: 695  QVPKSFSEIQPGMLLVGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTNPSDHFVEGQ 754

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDSR 1442
             V  +V  V+   +R+ V+L+ SD R
Sbjct: 755  TVVVKVTKVDEEKQRMLVSLRLSDCR 780



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 23/228 (10%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS-KGCFI 1385
            F +  +LR+++ G  S+ +  L   +  P K LEK E      +  G V  VT  KG  +
Sbjct: 1174 FQIGQALRATVVGPDSSRAF-LCLSLIGPHK-LEKGE------VAMGRVVKVTPHKGLTV 1225

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V + ++SD Y E+P ++F   K+V   VLS       + + L  ++  T S
Sbjct: 1226 AFPFGRTGTVSVFHMSDSYSETPLEDFMPQKVVRCYVLSTADHMLTLSLRLSRTNPETKS 1285

Query: 1446 Q---SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDHVDNI 1499
            +    EI+++ ++  G ++ G ++ +E  G+ + +   ++VGL    HVS+ S    D  
Sbjct: 1286 KVEDPEIDSMQDVKAGQLLRGYVQSIEPSGVLLGL-GPSVVGLAQFSHVSQSSPPKKDLY 1344

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA---DNLQMSSE 1544
                  G  +  K+L+++  K  + L    S+   D    D L +S E
Sbjct: 1345 RKYLPEGRLLTAKVLRLNHNKNLVEL----SFLPTDTGRPDVLSVSPE 1388



 Score = 41.6 bits (96), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 104/460 (22%), Positives = 186/460 (40%), Gaps = 51/460 (11%)

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
             RLK G   + R+  + ++D K+         FK G T   RII  S   +     L  L
Sbjct: 361  FRLKDGALAYARL--SHLSDSKNGFRPE---AFKPGNTHKCRIIDYSQMDE-----LALL 410

Query: 1139 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            S++ S++    +         D+  G  + G V  +     L+ +   ++  +  +  A 
Sbjct: 411  SLRTSVIEAQYLKYH------DIKTGAVIKGTVMTIKPFGMLVKVGEQMRGLVPAMHLAD 464

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
             P  ++  ++++H+G  V   VL  + E K L L L+          +    D       
Sbjct: 465  IP--MKNPEKKYHVGDEVKCRVLLCDPEAKKLILTLKKTLVTSKLPVITCYEDAKPGLQT 522

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVL- 1317
             G I+  R+        G +V+    + G V   EL +  + DP   +  GQ VK  VL 
Sbjct: 523  HGAIL--RVKDY-----GCIVKFYNDVQGLVPKHELSDQHIPDPEKVFYVGQVVKVAVLN 575

Query: 1318 -EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
             E SR       + LS +   D      S +         +  +  + +S   +V   + 
Sbjct: 576  CEPSRE-----RMLLSFKLLSDPERKNGSVE---------RRQKSKKAISVGQLVDVKIL 621

Query: 1377 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG----RVLSVEPLSKR 1431
              T  G  + +L   + A +   +LSD     P        L AG    RVL +    K+
Sbjct: 622  EKTKDGLHVAVLPHNIPAFLPTPHLSDHVTNGP---LLYHWLQAGDTLHRVLCLSQSEKQ 678

Query: 1432 VEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V +  K +        ++  + S +  G +++G +K ++ YG+F+    + L GL   + 
Sbjct: 679  VLLCRKPALVSAVEDGQVPKSFSEIQPGMLLVGFVKSIKDYGVFVQFP-SGLSGLAPKAI 737

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +S+  V N    +  G+ V VK+ KVD+EK+R+ + ++ S
Sbjct: 738  MSDKFVTNPSDHFVEGQTVVVKVTKVDEEKQRMLVSLRLS 777


>gi|255714000|ref|XP_002553282.1| KLTH0D13156p [Lachancea thermotolerans]
 gi|238934662|emb|CAR22844.1| KLTH0D13156p [Lachancea thermotolerans CBS 6340]
          Length = 1731

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 380/1332 (28%), Positives = 622/1332 (46%), Gaps = 196/1332 (14%)

Query: 667  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
            + +G++V G       +  +   I  G  K T+P  H++D        +   K G +   
Sbjct: 508  IPVGTIVPGCEITEVSDKGIKLSIFGGQFKATVPPLHISDI--RLVYPERKFKIGSKVKG 565

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH-------PNSVVHGYVCNIIETGCFV 779
            +L+   E   L +S K SL+N  ++    AS           +S +   V      GC V
Sbjct: 566  ILINATERGQLFMSLKKSLVNLDREETELASSFEDIEKIASSDSKLAATVDIFKPNGCIV 625

Query: 780  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             FL  L GF P S   +           +GQ+V   +L  N E  R+ ++ K    SS  
Sbjct: 626  SFLNGLRGFLPNSNISEAYVKRPQDHLRLGQTVIVKVLQHNKEQNRVIVTCK---VSSEA 682

Query: 840  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHS 898
            AS  +E                       +E  I+G S+I+  V E     +VV  +  +
Sbjct: 683  ASLQREA----------------------IENMIVGRSIIKVAVVEKTKDSIVVE-QVGT 719

Query: 899  DVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
             + G +    L+ + VE           GS ++  ++D  +  R+ +LS K   +    +
Sbjct: 720  GLRGVVYVGHLSDSRVEQNRAQLKKLKIGSELEGLVIDKDERTRVFNLSCKKSLMKDAEK 779

Query: 949  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKE---------NYLVLSLPEYNHSIGY 999
            +      Q  K++       G H   N  V+ V E          ++ L LP Y      
Sbjct: 780  SLLPLNYQDVKQR-------GNHSPFNGYVKSVSEKGVFVAFNGQFVGLVLPSYAVDSRD 832

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA---- 1055
             S+S          +F   QSV A    L +     R LL  K     ++S +  +    
Sbjct: 833  VSLS---------SKFYVNQSVSA--FLLRTDDDNERFLLSFKEPKNEKSSKTPESERPA 881

Query: 1056 --------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 1105
                    K+ S + +G + +A++  +K  +L +      HGRI I+EV D   ++ +  
Sbjct: 882  INPVDQSIKEVSEFALGKVTKAKVKAVKKNQLNVVLSDNLHGRIDISEVFDKFEDIKDPK 941

Query: 1106 NLFSNFKIGQTVTARIIA----KSNK-----PDMKKSFLWELSIKPSMLT-VSEIGSKLL 1155
               + FK G  +  ++I     KS+K         K+ L ELS KPS L  V+    K  
Sbjct: 942  KPLATFKKGDVLDVKVIGFHDVKSHKFLPVSHRSSKNVLIELSAKPSSLAGVNHATIK-- 999

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGK 1214
                DV +G  + G+V  V  +   LT+S  LKA++   D A E S+L    +  F +G 
Sbjct: 1000 ----DVKVGDSIVGFVNNVSKDIMWLTVSPSLKAKIDFFDLADENSQLGHGIEDSFPLGC 1055

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
            A+   V+SI++++  L +  R     GI D             I+ GD +  R+ KI   
Sbjct: 1056 ALRTKVVSIDQDRNTLSVSARTHDIKGIKD-------------INVGDCLPARLLKITDS 1102

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ---FVKCKVLEISRTVRGTFHVE 1330
               L++++G ++ G    T+  +   S PL      Q    V  KV+ I +   G  ++ 
Sbjct: 1103 Y--LLLELGENVRGVAFATDALD-DYSKPLKDVYANQKNSIVSAKVISIDKD-DGKLNLS 1158

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            L   +  DG + T+                  EDL    +V+G VK +T KG FI LS  
Sbjct: 1159 LRSENPRDGTAKTH------------------EDLKRGDVVRGLVKKITEKGIFIYLSST 1200

Query: 1391 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
            L A V +S L+D +++   K F   + V G+V++ +  S  + VTLK        +SE+N
Sbjct: 1201 LQAFVPVSKLTDSFIKDWRKFFKPMQSVVGKVVNCDDDS-HILVTLK--------ESEVN 1251

Query: 1451 -------NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETI 1502
                   + +++ VG+I  G +K V  +GLF+ ++NT N+ GL H +E+++  V ++ +I
Sbjct: 1252 GELRILKSYNDIKVGEIFEGAVKNVTDFGLFVKLDNTVNVTGLAHKTEVADSAVGDLASI 1311

Query: 1503 YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGS--YNRS 1560
            +  G+KVK  +LKV+ +K+++SLG+K+SYFK   +N Q S + E DE  E       N  
Sbjct: 1312 FGVGDKVKAIVLKVNPDKKQLSLGLKASYFKESNEN-QASDDAEGDEGSESSDEEVVNEE 1370

Query: 1561 SLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD-NGISQNQGHT 1619
               E+ S  ++  D E ED G                  +   +QP +  +G+S + G  
Sbjct: 1371 GQ-ESDSDGMEVDDHEGEDKG------------------DKSKQQPVLSSDGLSLSAGFD 1411

Query: 1620 DEAKTIDEKNNRHAKKKEKEER-------EQEIRAAEERLLEKD--APRTPDEFERLVRS 1670
                 +D+     + ++E           ++ ++  E++ ++ +  AP +  +FER++  
Sbjct: 1412 WTTSILDQAQEEESSEEEDFSETKRSKKKKKSVQGVEDQTIDINTRAPESVGDFERMIMG 1471

Query: 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1730
            +PNSS +W+ YMAF L + +++KAR +AERAL+TI+ REE EKLNIW+   NLEN +G  
Sbjct: 1472 NPNSSVIWMNYMAFQLQLGEIDKAREVAERALKTISFREEAEKLNIWIGLLNLENTFGT- 1530

Query: 1731 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRR 1789
             E  + +VF RA QY D   +H  L+ +++ +   + A  L     KKF      +W+  
Sbjct: 1531 -ESTLNEVFSRACQYMDSYTIHSKLINIFQMSHNFEKASLLFKTTAKKFGAEKVSIWVLW 1589

Query: 1790 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1848
               L++Q + E  + V+  AL SLPR  HI+ + + A LEF  G +++GRS+FEG+L++ 
Sbjct: 1590 SDFLIEQGRAEEARQVLASALQSLPRRNHIEVVRKFAQLEFAKGDSEQGRSLFEGLLADT 1649

Query: 1849 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908
            PKR DLW++YLDQEI+ GD   +  LFER ++  L  K+ KF F K+L++E++  +++  
Sbjct: 1650 PKRIDLWNVYLDQEIKSGDKKRVENLFERVVNRKLTRKQAKFFFGKWLDFEEASDDQKTA 1709

Query: 1909 EYVKQKAMEYVE 1920
            EYVK KA EYVE
Sbjct: 1710 EYVKAKASEYVE 1721



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 212/865 (24%), Positives = 359/865 (41%), Gaps = 124/865 (14%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEF-----EAVERGLHKKNKK---KKKKTERKANETVD 105
           FPRGG  +LT  E  ++  E  ++       AV       +++   KKK + + A  T D
Sbjct: 39  FPRGGASALTPLELKQVANEAASDVLFGSGPAVASPAANDSQRPKKKKKTSPKAATGTKD 98

Query: 106 DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
             G   GD  S  +    + +T +N+  G  + G +++VN+ DL + L   L G     +
Sbjct: 99  AAG---GDDESVAV---IDHLTFRNLPVGTLVLGRISKVNKHDLCVALSDNLCGFVTLPN 152

Query: 166 ALDPI----------LDNEIEANEDNL--------------------------LPTIFHV 189
             +P           ++++ EA++D                            L   F  
Sbjct: 153 ISEPFTKLLEDIDESMESDKEASDDESDAEYDNDDDDQKSSQAQAAKLKDLPDLNNFFTQ 212

Query: 190 GQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 246
           GQ + C V     LD + K+  +++I LS+  S   + L  E +     +   VKSIEDH
Sbjct: 213 GQWLRCSVHSNSALDKNSKK--QKRIELSIEPSATNQ-LIEEDLARNCTIQCAVKSIEDH 269

Query: 247 GYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKVVY-LSSDPDTVS 304
           G IL  G+   TGF+ +      S  +  PG + L  V +   RT  V +   +    VS
Sbjct: 270 GAILDVGMDGITGFISKKEC--ESLPNFAPGTVFLANVAKKSGRTVTVNFEFKNKKSKVS 327

Query: 305 KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 364
           +         S+D ++PG  V    Q    NGV+        G ++I   Q     T+ K
Sbjct: 328 QIS-------SVDAVIPGQAVDFLCQKKTSNGVIGKVFGLVDGFLNI--SQQAIFYTDSK 378

Query: 365 NDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLG 424
           +D       N R+  +               L N++    V + D+     +     G  
Sbjct: 379 SDQAYPIGSNTRVRIIAS-------------LKNKSGDKFVILSDLPSVLSLASETSGNS 425

Query: 425 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY-------KEGSC-----VRVRILGFRH 472
            L   P         V   D ++    KL K +       K G       V  R+LG+  
Sbjct: 426 ALEAFPVGYTFENCEVKGRD-SQYFYLKLNKDFLGRVHLSKTGEQEPSGEVSARVLGYDS 484

Query: 473 LEG---LATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCP 527
            +G   LAT   K  A E L     D+  G +V G ++  V   G  +  F G  KA  P
Sbjct: 485 FDGYYQLATDP-KVIAVEYL--RPIDIPVGTIVPGCEITEVSDKGIKLSIFGGQFKATVP 541

Query: 528 LPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV---KSKLAILSSYAE- 582
             H+S+  +V P +KFK+G+++   ++    + ++ ++ KK+LV   + +  + SS+ + 
Sbjct: 542 PLHISDIRLVYPERKFKIGSKVKGILINATERGQLFMSLKKSLVNLDREETELASSFEDI 601

Query: 583 ---ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 639
              A+        +   + +GC V F NG++GF P S +       P     +GQ V  +
Sbjct: 602 EKIASSDSKLAATVDIFKPNGCIVSFLNGLRGFLPNSNISEAYVKRPQDHLRLGQTVIVK 661

Query: 640 IMSSIPASRRINLSFMMKP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 694
           ++       R+ ++  +        R + ++++   S++   V   T +++VV  +  G 
Sbjct: 662 VLQHNKEQNRVIVTCKVSSEAASLQREAIENMIVGRSIIKVAVVEKTKDSIVVEQVGTGL 721

Query: 695 SKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQ- 751
            +G +   HL+D  +E        +K G E + L++  +E + +  LS K SL+  A++ 
Sbjct: 722 -RGVVYVGHLSDSRVEQNRAQLKKLKIGSELEGLVIDKDERTRVFNLSCKKSLMKDAEKS 780

Query: 752 -LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 807
            LP    D      +S  +GYV ++ E G FV F G+  G    S AVD +   LS  +Y
Sbjct: 781 LLPLNYQDVKQRGNHSPFNGYVKSVSEKGVFVAFNGQFVGLVLPSYAVDSRDVSLSSKFY 840

Query: 808 VGQSVRSNILDVNSETGRITLSLKQ 832
           V QSV + +L  + +  R  LS K+
Sbjct: 841 VNQSVSAFLLRTDDDNERFLLSFKE 865


>gi|449302185|gb|EMC98194.1| hypothetical protein BAUCODRAFT_32189 [Baudoinia compniacensis UAMH
            10762]
          Length = 1803

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 380/1386 (27%), Positives = 664/1386 (47%), Gaps = 169/1386 (12%)

Query: 616  SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSL 672
            S+  +D     S ++ V  V K RI++  P      +S    ++    +  +DL K+G +
Sbjct: 502  SDTRIDVLSSSSGLFKVDSVHKARIIAFNPIDNLYYVSLKQSVLDQAYLRLEDL-KVGEV 560

Query: 673  VSGVVD--VVTPNAVVVYVIAK--GYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-Q 726
            V G V+  ++     +  V+ K      G +P  H +D  L+H    +   + G+    +
Sbjct: 561  VKGTVERLILGGKTGITGVLVKLSATITGLVPETHFSDAQLQHP---ERKFREGFPVQAR 617

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
            +L +D E  ++ L+ K SLI+   ++  D + + P     G + N++ +G  V+F G + 
Sbjct: 618  VLSVDLEKRHVRLTFKKSLIDREVEVWQDYNILKPGMEGTGTIVNLLPSGAAVQFFGNVR 677

Query: 787  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
             + P ++  +G    + + + +GQ+V   IL VN+ET  + +S KQS             
Sbjct: 678  AWLPVAEMSEGYIERVEQHFRLGQTVNVRILSVNAETQEMKVSCKQSGL----------- 726

Query: 847  FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
            F  E++ A             W E    G ++ G V      G  V+ E  + + G I H
Sbjct: 727  FDAEQQEA-------------W-EAVSGGQLVSGSVTVKG--GESVTVELQNGLLGLIRH 770

Query: 907  HQLA-GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 965
              LA GA  ++ S    A+  +   + L DL      +   RE +       K    +A+
Sbjct: 771  GHLADGAPTKADS----ALSRIRVGQNLTDL-----LVLGKRERSRQVLLSNKPSLVKAA 821

Query: 966  KDLGVHQTVNAIVE-IVKENYLVLSLPE------YNHSIGYASVSDYNTQKFPQKQF--L 1016
            K   + ++   + E  V + ++    PE       N  +G    S   T K  +  F  L
Sbjct: 822  KAGTLIRSFADVREGAVAQGFVRNVTPEGVYVDFTNGIVGLVPKSQVGTDKVGKPAFGLL 881

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV--GSLVQAEITEI 1074
              Q+V   V+ + ++    R    L    +T+  +     + + +DV  G +V+  I  I
Sbjct: 882  KEQTVHTWVLNIDTA----RERFTLSMREQTDKPAVADRAQTAVHDVTKGQIVKVMIASI 937

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVEN--LFSNFKIGQTVTARIIAKSNKPDMK- 1131
            K  +L ++   G  GRI ++EV D   ++  N      FK  + + A+++   +  + + 
Sbjct: 938  KATQLNVRLANGVQGRIDVSEVFDSWDDISNNKAPLQKFKPNEELEAKVLGLHDARNHRF 997

Query: 1132 --------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
                    K+ ++ELS K S   +++   +LL  +  V     +  +V    +    + +
Sbjct: 998  LPISHRQGKAPVFELSAKRSR--INDQSEQLLGLDSIVPNASYLA-FVNNHGDNCVWVNL 1054

Query: 1184 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
            S +++ ++ ++D + +   LQ+ ++ F IG A+   V +I+     L L  R   +    
Sbjct: 1055 SPNVRGRIALMDLSDDAGMLQKVEKSFPIGCALQVTVKAIDLVSGRLDLTAR---NSTEQ 1111

Query: 1244 KTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1303
            K + + +      I  G ++ GR++K+      + VQ+   L G V   E+ +      +
Sbjct: 1112 KALTLQD------ISPGMVLPGRVTKVTER--AITVQLSDTLAGPVPLVEMSDNYEQLNV 1163

Query: 1304 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1363
              Y +   V+  VL I    +  F   LSLR S           LS+ +      +  + 
Sbjct: 1164 LQYRKNDIVRVCVLGIDTPNKKLF---LSLRPS---------KVLSSSLPVKDPQIASVS 1211

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
             L P  +V+G+VK+V  +G  + LS +LDA V +S+LSD YV+  +    I +LV GRV 
Sbjct: 1212 QLKPGDLVRGFVKHVGDRGVIVSLSPQLDAFVRISDLSDQYVKDWKSLVEIDQLVKGRVT 1271

Query: 1424 SVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
            +V+  +K V+++LK S  D        IN+L+    G IV G++++VE +G FI I+NT 
Sbjct: 1272 AVDSETKNVQLSLKASHVDEDYVPPISINDLA---AGTIVTGKVRKVEDFGAFIDIDNTQ 1328

Query: 1482 --LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADN 1538
              L GLCH SE++   V+++  +Y AG+ VK K+L VD E R+ISLG+K+SYF + DA++
Sbjct: 1329 PRLSGLCHRSEVAAKRVEDVRKLYSAGDVVKAKVLSVDLEARKISLGLKASYFADVDAND 1388

Query: 1539 LQMSSEEESDEAIEEVGSYNRSSL-LENSSVAVQDMDMESEDGGSLVLAQIESRASVPPL 1597
              +++++  DEA  +VG      + L N     +D D++ ++                  
Sbjct: 1389 PGVAADDVEDEAASDVGGVGIDDVQLGNGPYGEEDEDVDPDN----------------IA 1432

Query: 1598 EVNLDDEQPDMDNGISQNQ----------------------GHTDEAKTIDEKNNRHAKK 1635
            +V++ D + D  +G+  ++                      G        D +      K
Sbjct: 1433 DVDVHDGRTDGIDGMGFDEETVSKPTSGLKTLGFDWNGDAFGSATNGAMSDSEPETSVTK 1492

Query: 1636 KEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1695
            K K  +  EI+      L+K  PR+  +FER +   PN S +WI+YMAF L +++V++AR
Sbjct: 1493 KRKRNKP-EIKVDMTGDLDKYGPRSESDFERQLLGQPNYSGLWIQYMAFQLQLSEVQRAR 1551

Query: 1696 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1755
             IAERAL+TINIRE +EK NIW+A+ NLE EYG+  E  V +VF +A Q  D  ++H  L
Sbjct: 1552 DIAERALRTINIRETDEKANIWIAWLNLEVEYGD--EARVEEVFAQACQVQDSLEMHEKL 1609

Query: 1756 LGLYERTEQNKLADELLYKMI--KKFKHSCKVWLRRVQRLLKQQQEGV--QAVVQRALLS 1811
              +Y  + ++K AD +  +++  K F+ S +VWL     L+ + ++ V  +A++ RAL S
Sbjct: 1610 ASIYIDSGKHKRADNIFERIVAHKAFRASPEVWLNYATFLMDRSRDPVRARALLTRALQS 1669

Query: 1812 LPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQE----IRL 1865
            +  ++H    ++ A LEF+  NG  +RGR++FEG+L+E+PK +  W +++D E     R+
Sbjct: 1670 IQMNEHRPLTAKFAGLEFRFLNGDPERGRTIFEGLLTEWPKWSSGWDMWVDLERSRLARV 1729

Query: 1866 GDVD-------LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
            G  D        +R L+ER  +     ++ +F+FK++LE+E+  G  +  E VK  A EY
Sbjct: 1730 GPQDERAEAREKVRALYERMAAQKTKKRRARFVFKQWLEFEEKEGNGKGAERVKALAKEY 1789

Query: 1919 VESTLA 1924
            VES  A
Sbjct: 1790 VESQQA 1795



 Score =  204 bits (520), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 329/1410 (23%), Positives = 590/1410 (41%), Gaps = 169/1410 (11%)

Query: 54   FPRGGGHSLTQRERDEIHAEV------------------DAEFEAVERGLHKKNKKKKKK 95
            FPRGG   LT  E  +I A+                   DA+ E       ++  +KK+K
Sbjct: 59   FPRGGASVLTPIEHKQIKAQAERDVLFEQQTGQKAPGRDDADGELFGEEPTQEPVRKKRK 118

Query: 96   TERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPG 155
            T +++N T    G+  G  I G        ++ KN++ G ++ G V  +  +D+ + LP 
Sbjct: 119  T-KQSNSTAAPQGTGSGIRIQG--------LSYKNLAVGSQVLGYVTAITARDIALALPN 169

Query: 156  GLRGLARAADALDPILDNEIE-----------ANEDNLLPTIFHVGQLVSCIVLQLDDDK 204
             L G      A+  IL+  IE            +ED  L  +F+VGQ +   V  +  ++
Sbjct: 170  NLTGYV-PITAVSDILNARIERLLAEDERRADDDEDVDLKRLFYVGQWLRATVRSVGSEQ 228

Query: 205  K-EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT--GFL 261
                 KR I L++  S +  GL  ++V    +L A V+S+EDHG ++  GL   T  GF+
Sbjct: 229  AGSKSKRHIELAIAPSQVNGGLDGDSVVVNSMLQAAVRSVEDHGVVMDLGLGDETVKGFV 288

Query: 262  PRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK-CVTKDLKGIS---- 315
             + +L     +  ++ G ++  +V       KV+ LS D    S     K+   +S    
Sbjct: 289  SKKDLGAGFKLGQLQEGQVMMCLVTGKSSNGKVLKLSPDAARFSTHGAEKETPVVSEAPT 348

Query: 316  IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 375
            ++  +PG  VS  V      GV+   +     T D+ H        +    Y    K+  
Sbjct: 349  VEAFLPGTAVSILVTDSGAGGVVGKVMGMVDVTADVMHSGAATKGADMSKKYKIGSKIYG 408

Query: 376  RILFVDPTS---RAVGLTLNPYLLHNRAPPS-------------------HVKVGDIYDQ 413
            RI++  P +   R VG++L  ++L    P S                   H+ +  I   
Sbjct: 409  RIVWTLPNADDGRRVGVSLLDHMLCLPPPTSRLPEAASAKLRVQATQLEQHMPISAIIGD 468

Query: 414  SKVVRVDRGLGLLLDIPSTP-VSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILG 469
            +KVV +    G+ L++P+      PA+  IS V++  +  L      +K  S  + RI+ 
Sbjct: 469  AKVVHLLSERGIFLELPTVAGQPAPAFAHISQVSDTRIDVLSSSSGLFKVDSVHKARIIA 528

Query: 470  FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV------DSFGAIVQFPGGVK 523
            F  ++ L    LK S  +       D+K G VVKG V  +         G +V+    + 
Sbjct: 529  FNPIDNLYYVSLKQSVLDQAYLRLEDLKVGEVVKGTVERLILGGKTGITGVLVKLSATIT 588

Query: 524  ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYA 581
             L P  H S+ ++  P +KF+ G  +  RVL V  + + + +T KK+L+  ++ +   Y 
Sbjct: 589  GLVPETHFSDAQLQHPERKFREGFPVQARVLSVDLEKRHVRLTFKKSLIDREVEVWQDYN 648

Query: 582  EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
                 +   G I  +   G  V+F+  V+ + P +E+           + +GQ V  RI+
Sbjct: 649  ILKPGMEGTGTIVNLLPSGAAVQFFGNVRAWLPVAEMSEGYIERVEQHFRLGQTVNVRIL 708

Query: 642  SSIPASRRINLSFMMKPTRVSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
            S    ++ + +S        +E     + V  G LVSG V V    +V V +  +    G
Sbjct: 709  SVNAETQEMKVSCKQSGLFDAEQQEAWEAVSGGQLVSGSVTVKGGESVTVEL--QNGLLG 766

Query: 698  TIPTEHLADHL-EHATVMKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQQ--L 752
             I   HLAD     A    S I+ G     LLVL     S  +LLS K SL+ +A+   L
Sbjct: 767  LIRHGHLADGAPTKADSALSRIRVGQNLTDLLVLGKRERSRQVLLSNKPSLVKAAKAGTL 826

Query: 753  PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
                + +   +V  G+V N+   G +V F   + G  P+S+    +    +      Q+V
Sbjct: 827  IRSFADVREGAVAQGFVRNVTPEGVYVDFTNGIVGLVPKSQVGTDKVGKPAFGLLKEQTV 886

Query: 813  RSNILDVNSETGRITLSLKQSCCSSTDASFMQE--HFLLEEKI--AMLQSSKHNGSELKW 868
             + +L++++   R TLS+++       A   Q   H + + +I   M+ S K     ++ 
Sbjct: 887  HTWVLNIDTARERFTLSMREQTDKPAVADRAQTAVHDVTKGQIVKVMIASIKATQLNVRL 946

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV- 927
              G      ++G++  S  F          D +  I++++      +    ++A +L + 
Sbjct: 947  ANG------VQGRIDVSEVF----------DSWDDISNNKAPLQKFKPNEELEAKVLGLH 990

Query: 928  -AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVN-----AIVEIV 981
             A+  R + +S +      F  +     A++ +   ++ + LG+   V      A V   
Sbjct: 991  DARNHRFLPISHRQGKAPVFELS-----AKRSRINDQSEQLLGLDSIVPNASYLAFVNNH 1045

Query: 982  KENYLVLSL-PEYNHSIGYASVSDYNT--QKFPQKQFLNGQSVIATVMALPSSSTAGRLL 1038
             +N + ++L P     I    +SD     QK  +K F  G ++  TV A+     +GRL 
Sbjct: 1046 GDNCVWVNLSPNVRGRIALMDLSDDAGMLQKV-EKSFPIGCALQVTVKAI--DLVSGRLD 1102

Query: 1039 LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
            L  +       S+ ++A        G ++   +T++    + ++      G + + E++D
Sbjct: 1103 LTAR------NSTEQKALTLQDISPGMVLPGRVTKVTERAITVQLSDTLAGPVPLVEMSD 1156

Query: 1099 DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK--LLF 1156
            +   +  N+    K    +    +   + P+ KK F   LS++PS +  S +  K   + 
Sbjct: 1157 NYEQL--NVLQYRK--NDIVRVCVLGIDTPN-KKLF---LSLRPSKVLSSSLPVKDPQIA 1208

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1216
                +  G  V G+V  V +   ++++S  L A  F+  S      +++++    I + V
Sbjct: 1209 SVSQLKPGDLVRGFVKHVGDRGVIVSLSPQLDA--FVRISDLSDQYVKDWKSLVEIDQLV 1266

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
             G V +++ E K ++L L+       D    IS +++      G IV G++ K+    G 
Sbjct: 1267 KGRVTAVDSETKNVQLSLKASHVD-EDYVPPISINDLAA----GTIVTGKVRKV-EDFGA 1320

Query: 1277 L--VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
               +    P L G  H +E+    V D    Y  G  VK KVL +    R     ++SL 
Sbjct: 1321 FIDIDNTQPRLSGLCHRSEVAAKRVEDVRKLYSAGDVVKAKVLSVDLEAR-----KISL- 1374

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G+ ++  +D+  D + PG   + +ED
Sbjct: 1375 ----GLKASYFADV--DANDPGVAADDVED 1398



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 98/450 (21%), Positives = 193/450 (42%), Gaps = 54/450 (12%)

Query: 1092 HITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG 1151
            HI++V+D + +V+ +    FK+     ARIIA  N  D     L+ +S+K S+L      
Sbjct: 497  HISQVSDTRIDVLSSSSGLFKVDSVHKARIIA-FNPIDN----LYYVSLKQSVL------ 545

Query: 1152 SKLLFEECDVSIGQRVTGYVYK--VDNEWALLTISRHLKAQL--FILDSAYEPSELQEFQ 1207
             +      D+ +G+ V G V +  +  +  +  +   L A +   + ++ +  ++LQ  +
Sbjct: 546  DQAYLRLEDLKVGEVVKGTVERLILGGKTGITGVLVKLSATITGLVPETHFSDAQLQHPE 605

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND-NMQTFIHEGDIVGGR 1266
            R+F  G  V   VLS++ EK+ +RL    F+  + D+ V++  D N+     EG    G 
Sbjct: 606  RKFREGFPVQARVLSVDLEKRHVRLT---FKKSLIDREVEVWQDYNILKPGMEGT---GT 659

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGT 1326
            I  +L    G  VQ   ++   +   E+    +      +  GQ V  ++L ++   +  
Sbjct: 660  IVNLLP--SGAAVQFFGNVRAWLPVAEMSEGYIERVEQHFRLGQTVNVRILSVNAETQ-- 715

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1386
               E+ +     G+                +  E  E +S   +V G V     +   + 
Sbjct: 716  ---EMKVSCKQSGLFDA-------------EQQEAWEAVSGGQLVSGSVTVKGGESVTVE 759

Query: 1387 LSRKLDAKVLLSNLSDGYVESPEK-EFPIGKLVAGR------VLSVEPLSKRVEVTLKTS 1439
            L   L   +   +L+DG   +P K +  + ++  G+      VL     S++V ++ K S
Sbjct: 760  LQNGLLGLIRHGHLADG---APTKADSALSRIRVGQNLTDLLVLGKRERSRQVLLSNKPS 816

Query: 1440 DSRTA-SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
              + A + + I + +++  G +  G ++ V   G+++   N  +VGL   S++  D V  
Sbjct: 817  LVKAAKAGTLIRSFADVREGAVAQGFVRNVTPEGVYVDFTN-GIVGLVPKSQVGTDKVGK 875

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
                    + V   +L +D  + R +L M+
Sbjct: 876  PAFGLLKEQTVHTWVLNIDTARERFTLSMR 905


>gi|327305835|ref|XP_003237609.1| rRNA biogenesis protein RRP5 [Trichophyton rubrum CBS 118892]
 gi|326460607|gb|EGD86060.1| rRNA biogenesis protein RRP5 [Trichophyton rubrum CBS 118892]
          Length = 1823

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 363/1337 (27%), Positives = 638/1337 (47%), Gaps = 165/1337 (12%)

Query: 667  VKLGSLVSGVVD--VVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIKPGY 722
            V +GS+V G ++  ++ P  +   +++   S  G +P  H+AD  L+H    +   + G 
Sbjct: 565  VTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMADTKLQHP---EKKFREGL 621

Query: 723  EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
            +   ++L +D +   L L+ K SL+NS      D   I   +   G +  I   G  V+F
Sbjct: 622  KVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGNRSPGTLIKIQNNGAIVQF 681

Query: 782  LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     + D  
Sbjct: 682  YGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLIVSCKDPSTVTAD-- 739

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
              Q  F   EK+                     G V+ G V E +   +++  ++   + 
Sbjct: 740  -YQSAF---EKVHP-------------------GLVVSGTVFEKSSDDLLIKLQDSGLIA 776

Query: 902  GFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRFREANS 951
               + H   G++ +  S +             +  V K+ RL++++ K            
Sbjct: 777  RITSDHISDGSSAKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATL--------- 827

Query: 952  NRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKF 1010
             ++A  + R     +D+     V  IV+ I+ E   V  L      I    V D +  + 
Sbjct: 828  -KEAAAEGRLPANFEDIKHGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHASR- 885

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS------ETETSSSKRA--------- 1055
            P   +   Q + ATV A+   S   R LL L+ +S      ++ ++S K+A         
Sbjct: 886  PDFGYSRFQVISATVCAVQEDSD--RFLLSLRPVSKPKQQSDSNSASEKKAPAVVLNNPV 943

Query: 1056 ----KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FS 1109
                K      VG + +A+IT +K  +L +       GRI I+E+ D   ++ +      
Sbjct: 944  DEELKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLK 1003

Query: 1110 NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
            +F   + +  R++   +  + K         K  ++ELS K S L   E    L  E+  
Sbjct: 1004 SFHSKEILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQAGEF-KPLHLEQ-- 1060

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +  G +  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A+   V
Sbjct: 1061 LKAGDQYIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAV 1120

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
              I+ EK  L L  R    G S KT+ +++      + +G I+ GR++KI      ++VQ
Sbjct: 1121 TGIDAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR--QVLVQ 1169

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1340
            I  ++ G +   ++     +D  +  +   F K + L +         V++ + +     
Sbjct: 1170 INDNVVGAISLIDM-----ADDYTKVNPTNFHKNEALRVCV-------VDVDIPNKKISF 1217

Query: 1341 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1400
            S   S  LS+ +      +  I++L    IV+G+++ V + G F+ L   + A + +S+L
Sbjct: 1218 SVRPSKVLSSSLPVVDPEITSIDNLKIGQIVRGFIRRVDNIGVFVTLGHDVTAYIRVSDL 1277

Query: 1401 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1460
            SD +++  + EF + +LV GR+  V+  + ++++TLK S +   +      L +L VG I
Sbjct: 1278 SDSFLKEWKDEFQVDQLVQGRLTVVDKDNNKIQMTLKKS-ALDPNYKPPFTLKDLKVGQI 1336

Query: 1461 VIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKE 1519
            V G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y   + VK K+LKVD E
Sbjct: 1337 VTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKVDLE 1396

Query: 1520 KRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESED 1579
            K +I+LG+K+SYF++  D      E E++ + +E G     + +++      D+ M    
Sbjct: 1397 KGQIALGLKASYFRDLPDE----DESEANASDDEAGGIKLDAGVDSD----DDVSM---- 1444

Query: 1580 GGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN-----------QGHTDEAKTIDEK 1628
             G + L   +        + + D E  +  + I +             G  D+ +  DE 
Sbjct: 1445 -GGVDLEGEDDEEEEEEEDSDEDTEMENASDSIKKGGLVTSGFDWTGDGDKDKYEAADES 1503

Query: 1629 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1688
                   K K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W+KYMAF L +
Sbjct: 1504 AEDDGATKRKKRRKAEIQIDRTGDLDANGPQSVADYERLLLGEPDSSLLWLKYMAFQLEL 1563

Query: 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748
             +V+KAR IA+RAL+T++I ++ EKLNIW+A  NLEN +GN  ++ + +VF+ A +Y D 
Sbjct: 1564 GEVDKAREIADRALRTMSIGQDTEKLNIWIARLNLENTFGN--DDTLDEVFKSACEYNDA 1621

Query: 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA---VV 1805
             +++  +  ++ ++ + + ADEL    +KK   S   +       L    E  Q    ++
Sbjct: 1622 HEIYDRMTSIFIQSGKTEKADELFQTALKKKVSSTPDFFLNYANFLFDTMEAPQRGRDLL 1681

Query: 1806 QRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863
             RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI
Sbjct: 1682 PRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERGRTVFEGLLSSFPKRIDLWNVLLDLEI 1741

Query: 1864 RLGDVDLIRGLFERAISLS----------------LPPKKMKFLFKKYLEYEKSV---GE 1904
            ++GD + +R LFER + +                 L  K+ KFLFKK+L +E+ +   G+
Sbjct: 1742 KVGDEEQVRRLFERVLGIGHGVVAADGTKGGPKKKLKEKQAKFLFKKWLAFEEKIAPEGD 1801

Query: 1905 EERIEYVKQKAMEYVES 1921
             + ++ VK +A +YV S
Sbjct: 1802 TKMVDEVKARAADYVRS 1818



 Score =  237 bits (604), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 339/1430 (23%), Positives = 603/1430 (42%), Gaps = 163/1430 (11%)

Query: 3    ASSRKSQKKSSKDGPKFNKAS---------------KNQFKNSKKQINDAVEAQDLALPP 47
            +SS   +KK+  D  + N AS               K   K SKK  N   +A  +++  
Sbjct: 14   SSSSAPKKKAKVDAEELNGASKLKKKSKEPKEQKEQKETVKASKKDTNTVSKAAPISMLR 73

Query: 48   DDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERG------LHKKNKKKKKKTERKAN 101
            D+  P FPRGG + LT  ER +I  +   +    ++G       + +++      E K +
Sbjct: 74   DEQ-PAFPRGGNNVLTPLERKQIQIQATKDVLFEQKGKNGAEFANSEDEGSLGAAEDKKD 132

Query: 102  ETVDDLGSLFGDGISGKLPRYANK------ITLKNISAGMKLWGVVAEVNEKDLVICLPG 155
             +            + + P  A +      +T K I+ G ++ G V+ +   D+ + LP 
Sbjct: 133  ASTKSKKRKAKASKTKEAPAAAKQGVKVESLTYKRIAVGSRILGQVSSIGLHDISLALPN 192

Query: 156  GLRGLARAADALDPILDNEIEA--------------NEDNLLPTIFHVGQLVSCIV---L 198
             L G     +A+   L  ++EA              ++D  L +   VGQ +   V   +
Sbjct: 193  NLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEEDEDDDDLDLKSYVKVGQYLRAAVTATI 251

Query: 199  QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-- 256
            + +DD+K   K+ I LS+       GL+   +     + A V S+EDHG ++  GL    
Sbjct: 252  RNEDDRKVKNKKHIELSIEPHAANSGLTKADMVVNATVQASVISVEDHGLVMDLGLEENE 311

Query: 257  FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSD---PDTVSKCVTKD 310
              GF+    L   +G+D   VK G +   +V   + +  V+ LS+D   P +V K    +
Sbjct: 312  AKGFISSRELP--AGVDISTVKEGSVFLCIVTGQNASGTVIKLSADLASPGSVKKAHFLN 369

Query: 311  LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 370
                +I+  +PG      +  +   G++   +      VD+ H   +    +    Y+  
Sbjct: 370  -TAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVIHSGASDGKKDLTTKYHAG 428

Query: 371  KKVNARILFVDPTSRAVGL---TLNPYL-------LHNRAPPSHVKVGDIYDQSKVVRVD 420
             K+  R++   P+S  V L    L+  L       L N A      + DI  + KV  VD
Sbjct: 429  AKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGAGDDLPSISDIIPEVKVTYVD 488

Query: 421  RGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
              LGL + + ST      +V +S +A+   + +  +E  YK GS    RI+GF  ++ L 
Sbjct: 489  SSLGLYVQLGST--KHQGFVHLSRIADGRVDSISSIEGPYKVGSTHEGRIIGFSAMDNLF 546

Query: 478  TGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMS 532
               L+    E   F   DV  G VVKGK+    I  +   G IV     +  L P  HM+
Sbjct: 547  LVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDSISGLVPEMHMA 606

Query: 533  EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
            + ++  P KKF+ G ++  RVL V  + +++ +T KK+L+ S  A    Y   +    + 
Sbjct: 607  DTKLQHPEKKFREGLKVSVRVLSVDLQKRQLRLTLKKSLLNSDSAPWKDYESISAGNRSP 666

Query: 591  GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
            G + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQVV    ++    + R+
Sbjct: 667  GTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERL 726

Query: 651  NLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
             +S    P+ V+ D     + V  G +VSG V   + + +++ +   G     I ++H++
Sbjct: 727  IVS-CKDPSTVTADYQSAFEKVHPGLVVSGTVFEKSSDDLLIKLQDSGLI-ARITSDHIS 784

Query: 706  D-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIH 760
            D      T   + I+ G + D LLV   + S+ L+  + K +L  +A +  LP++   I 
Sbjct: 785  DGSSAKRTSTLNRIRVGQKMDGLLVYRVKKSHRLIEVTNKATLKEAAAEGRLPANFEDIK 844

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
                V G V NII  G FV FL  LTG  P+    D   +     Y   Q + + +  V 
Sbjct: 845  HGLKVTGIVKNIIPEGIFVEFLDNLTGLIPKRLVDDDHASRPDFGYSRFQVISATVCAVQ 904

Query: 821  SETGRITLSLK-----QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG 875
             ++ R  LSL+     +    S  AS        E+K   +  +     ELK +E  ++G
Sbjct: 905  EDSDRFLLSLRPVSKPKQQSDSNSAS--------EKKAPAVVLNNPVDEELKAMEDIVVG 956

Query: 876  SVIEGKVHESND--FGVV--------VSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL 925
             + + K+    D    VV        +   E  D +  I   +    +  S  ++   +L
Sbjct: 957  RITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLKSFHSKEILPVRVL 1016

Query: 926  DV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKE 983
             +  A+  + + +S ++  +  +  +      Q  + K    + L         V  + E
Sbjct: 1017 GIHDARNHKFLPISHRSGKVSVYELSTKRSCLQAGEFKPLHLEQLKAGDQYIGFVNNIAE 1076

Query: 984  NYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL 1041
            + L L++ P     +    +S D + +   QK F  G ++   V  + +     RL L  
Sbjct: 1077 DCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVTGIDAEKN--RLDLSA 1134

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            +  S  +T +     K      G ++   +T+I   ++ ++      G I + ++ DD +
Sbjct: 1135 RIGSSAKTLTVADLSK------GMILVGRVTKITDRQVLVQINDNVVGAISLIDMADDYT 1188

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG--SKLLFEEC 1159
             V     +NF   + +   ++   + P+ K SF    S++PS +  S +      +    
Sbjct: 1189 KVNP---TNFHKNEALRVCVV-DVDIPNKKISF----SVRPSKVLSSSLPVVDPEITSID 1240

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ IGQ V G++ +VDN    +T+   + A  +I  S    S L+E++  F + + V G 
Sbjct: 1241 NLKIGQIVRGFIRRVDNIGVFVTLGHDVTA--YIRVSDLSDSFLKEWKDEFQVDQLVQGR 1298

Query: 1220 VLSINKEKKLLRLVLR----------PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
            +  ++K+   +++ L+          PF   + D  V             G IV G++ K
Sbjct: 1299 LTVVDKDNNKIQMTLKKSALDPNYKPPFT--LKDLKV-------------GQIVTGKVRK 1343

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            +      + +    +L G  H +E+    V D    Y++   VK KVL++
Sbjct: 1344 VEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKV 1393


>gi|164425200|ref|XP_962876.2| hypothetical protein NCU06272 [Neurospora crassa OR74A]
 gi|157070830|gb|EAA33640.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1774

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 383/1393 (27%), Positives = 664/1393 (47%), Gaps = 184/1393 (13%)

Query: 608  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTR 660
            GV GF   S +    +D   E S  Y VG V   R++  ++      I+L  S + +P  
Sbjct: 465  GVSGFVHISRVKDGKVDALFENSGPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFL 524

Query: 661  VSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 715
              ED  + +G++VSGVV+ +  NA     ++  IA G S G +P  H AD HL++    +
Sbjct: 525  RIED--IPVGAVVSGVVEKMVVNAAGVGGLIVKIADGIS-GLVPEMHFADVHLQNP---E 578

Query: 716  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNI 772
               + G +   ++L  D  S  + L+ K +L+NS   LP+  S+  I       G + N+
Sbjct: 579  KKFREGLKVKARVLSTDAASRQIRLTLKKTLVNS--DLPAIQSYEQIAVGQQALGTIINV 636

Query: 773  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            ++ G  V+F GRL GF P S+  +    D  + + VGQ+V   ++  + +  ++ +S K 
Sbjct: 637  LQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKD 696

Query: 833  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
                          F LE+++A+              +   IG V+  KV +  D  V V
Sbjct: 697  PSA-----------FGLEKQLAL--------------KKLQIGDVVSAKVTQKTDDDVFV 731

Query: 893  SFEEHSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLKTVF 942
               + S        H    +  ++ S ++            IL+  +A R + LS K   
Sbjct: 732  ELADSSLKAILPVAHLTDKSVSKTQSALKKIHVNQTLAELVILEKNEARRSIILSQKPSL 791

Query: 943  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYAS 1001
            +   +E          +   E S   G  + + A    V+    L   LP+        S
Sbjct: 792  VKASKEGKFLTTLDGARVGDEVS---GYIRNITATAVFVQFGGKLTALLPK--------S 840

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE----TETSSSKRA-- 1055
            +     Q  P       QSV   + ++  ++   RL++ +   +E     ET   K A  
Sbjct: 841  MIPREDQDKPDFGMFKSQSVTVKITSV--NTELNRLVVAIPGAAEQVKKVETKGEKVANP 898

Query: 1056 --KKKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLF 1108
              +  ++ D   +G L +A I  +K  +L ++      GRI +++V D    +   +   
Sbjct: 899  VDESITTLDDISIGKLTKARIVSVKDTQLNVQLADNIQGRIDVSQVYDSWEQIKDTKKPL 958

Query: 1109 SNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECD 1160
              F+  Q V  R++    A++++  P   +S   + ELS KPS +        L F+  +
Sbjct: 959  KRFQPNQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEGASSEPLSFD--N 1016

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            + +G    G+V  V      + +S  ++ ++  ++++ + S L    + F IG A+   V
Sbjct: 1017 LKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSALRVRV 1076

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
            +S++ E K L L  R    G  D   +++ D     I +  I+ G+I+K+      ++V+
Sbjct: 1077 VSVDAESKRLDLSAR--SPGSED---ELTWDK----IAQDVILVGKITKVDER--QVIVK 1125

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1340
            +   L G VH  +L +       + + + + V+  V+E+ ++ +    + LS R S    
Sbjct: 1126 LSESLAGPVHKVDLVDDYEEANPAKFAKNEIVRVAVVEVDKSNK---RIRLSTRPS---- 1178

Query: 1341 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1400
                   L++ +    K + +   L    IV+G+VKNV+ KG F+ L   + A V + NL
Sbjct: 1179 -----RILNSSLPVKDKEITQNTKLEVGEIVRGFVKNVSDKGLFVTLGGTVTAFVQIKNL 1233

Query: 1401 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1460
            SD Y++  +++F + +LV GR++SV   + R+E++LK S         +  +S+L  G  
Sbjct: 1234 SDAYLKYWKEQFQVDQLVKGRIISVA--NGRIEMSLKPS-VVDKDYVPLTTISDLKEGQT 1290

Query: 1461 VIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKE 1519
            + G++++VE +G FI I+ + NL GLCH SE+S+  V +   +Y  G+KVK K+LKVD  
Sbjct: 1291 ITGRVRKVEEFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEGDKVKAKVLKVDIT 1350

Query: 1520 KRRISLGMKSSYFKNDADNLQMSSE----------------EESDEAIEEVGSYN----R 1559
             +RI+LG+K SYF    D  +M  +                 ++D+A++  G+ N     
Sbjct: 1351 AKRINLGLKPSYFGEQDDEDEMDVDEEDAEDSEGDDSDEDMSDADDAVQITGTDNVEDES 1410

Query: 1560 SSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHT 1619
                E S V + D D++  + G                     D    +++G   N    
Sbjct: 1411 EDEDEASDVEMVDADVKGLEAGGF-------------------DWSASLEDGEKANASAA 1451

Query: 1620 D-EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1678
            D EA            KK+K  RE ++   +   L+ D P+T  ++ERL+   PNSS +W
Sbjct: 1452 DLEA----------LAKKKKARREPQVTVDKTASLDVDGPQTASDYERLLLGQPNSSQLW 1501

Query: 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1738
            I YMAF + ++D+  AR +AERA++TINI+EE EKLN+W+AY NLE  YGN  EE V +V
Sbjct: 1502 IAYMAFQMQVSDLAAARQVAERAIKTINIKEEIEKLNVWIAYLNLEVAYGN--EETVDEV 1559

Query: 1739 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRRVQRL--LK 1795
            F+RA  Y D ++VH  L  +Y ++ + K AD+L  K++K+F + S +VW+     L    
Sbjct: 1560 FKRACTYNDKQEVHERLASIYIQSGKRKQADDLFEKIVKEFGYKSPEVWVNYAHFLHTTA 1619

Query: 1796 QQQEGVQAVVQRA--LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKR 1851
               +  +A+++RA  +L    H ++  + + A LEF+  NG  ++GR++FE +L+ YPK+
Sbjct: 1620 HSPDRARALLKRATQVLGKETHMYLALLPKFAALEFRSPNGDKEQGRTLFENLLATYPKK 1679

Query: 1852 TDLWSIYLDQEIRLGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERI 1908
             DLW+  +D E    D D  +IR LF+R   +  L P++ K  F+++ ++E+  G+++  
Sbjct: 1680 FDLWNQLIDLETSAADADKGVIRDLFDRGSKVKGLKPRQAKAWFRRWAQWEEKNGDKKSR 1739

Query: 1909 EYVKQKAMEYVES 1921
            E V  KA E+  +
Sbjct: 1740 ERVSAKAQEWART 1752



 Score =  206 bits (523), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 232/878 (26%), Positives = 384/878 (43%), Gaps = 85/878 (9%)

Query: 7   KSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRE 66
           KS    SK G K  K        S K    A  A   +    ++ P+FPRGG   LT  E
Sbjct: 32  KSNDAGSKAGAKTGKQGNKPAPKSDKPAPPAPTAPATSTLLKEEEPMFPRGGASILTPLE 91

Query: 67  RDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYAN 124
             +I   A+ DA FE          ++  K T +KA E             S   P   +
Sbjct: 92  YKQIQVQAKNDALFE----------EQSSKATAKKAGEKEGKQKKSKKRSKSDDTPAKPD 141

Query: 125 -------KITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------------RAA 164
                   +  K +  G  + G V  +N  D+ + LP  + G                A+
Sbjct: 142 ADAVKVESLNFKRLVKGSLVLGSVCAINSLDIAVALPNNIIGHVPITAISAPLTKRLEAS 201

Query: 165 DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKE----IGKRKIWLSLRLSL 220
              D   ++E E + D  L ++F +GQ V   V+   D+         KR I LSL+ SL
Sbjct: 202 AGNDNAEESEDENDNDVDLESLFQIGQYVRAYVVSTVDEASTHTPGKAKRHIELSLQPSL 261

Query: 221 LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPG 277
              G++ + V     + A + S+EDHGY++   +      GFL R  + ++   + ++PG
Sbjct: 262 ANTGMAEQDVVVNSTVMAAIASVEDHGYVMDIEIADSKLQGFLARKQVDKSIPQEALQPG 321

Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
            +L  +V + +   KVV LS+  +T+           +ID  +PG      V  +  +G+
Sbjct: 322 AVLLCIV-TKNAKGKVVQLSTLGETMGNVENVPSTATTIDTFLPGTAADVLVSEVSSHGI 380

Query: 338 MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH 397
           +   +     T D+ H        + ++ Y    ++ AR++   PT++      +P L  
Sbjct: 381 VGKIMGSLDVTADLVHSGAGPDGIDLEDTYKVGSRLKARVICNFPTAK------HPKLGI 434

Query: 398 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---E 454
           +  P S      I ++  V +V+  +GL +D+    VS   +V IS V + +V  L    
Sbjct: 435 SALPHST-----IVEKCTVKQVEPEIGLYVDVGVEGVS--GFVHISRVKDGKVDALFENS 487

Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSF 512
             YK GS    R++G+   +G+    L+ S  E       D+  G VV G V  + V++ 
Sbjct: 488 GPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFLRIEDIPVGAVVSGVVEKMVVNAA 547

Query: 513 GA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKK 567
           G    IV+   G+  L P  H ++  +  P KKF+ G ++  RVL     S++I +T KK
Sbjct: 548 GVGGLIVKIADGISGLVPEMHFADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLTLKK 607

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
           TLV S L  + SY +        G I  + +HG  V+FY  ++GF P SE+      +P 
Sbjct: 608 TLVNSDLPAIQSYEQIAVGQQALGTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIQDPK 667

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPN 683
             + VGQ V   ++S  P + ++ +S         E  L    +++G +VS  V   T +
Sbjct: 668 EHFRVGQTVSIYVISFDPDAAKLIVSCKDPSAFGLEKQLALKKLQIGDVVSAKVTQKTDD 727

Query: 684 AVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLL 738
            V V  +A    K  +P  HL D  +  +  +S +K         +L++L+ NE+  +++
Sbjct: 728 DVFVE-LADSSLKAILPVAHLTD--KSVSKTQSALKKIHVNQTLAELVILEKNEARRSII 784

Query: 739 LSAKYSLINSAQQ----LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
           LS K SL+ ++++       D + +     V GY+ NI  T  FV+F G+LT   P+S  
Sbjct: 785 LSQKPSLVKASKEGKFLTTLDGARV--GDEVSGYIRNITATAVFVQFGGKLTALLPKSMI 842

Query: 795 V--DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
              D  + D     +  QSV   I  VN+E  R+ +++
Sbjct: 843 PREDQDKPDFG--MFKSQSVTVKITSVNTELNRLVVAI 878



 Score = 50.8 bits (120), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 4/163 (2%)

Query: 499  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
            G +V+G V  V   G  V   G V A   + ++S+  +    ++F+V   +  R++ V +
Sbjct: 1201 GEIVRGFVKNVSDKGLFVTLGGTVTAFVQIKNLSDAYLKYWKEQFQVDQLVKGRIISVAN 1260

Query: 559  KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGVQGFAPRS 616
             RI ++ K ++V      L++ ++  +     G + K+E+ G F+       + G   RS
Sbjct: 1261 GRIEMSLKPSVVDKDYVPLTTISDLKEGQTITGRVRKVEEFGAFIDIDGSANLSGLCHRS 1320

Query: 617  ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            E+      +   +Y  G  VK +++     ++RINL   +KP+
Sbjct: 1321 EMSDKTVKDARKLYEEGDKVKAKVLKVDITAKRINLG--LKPS 1361


>gi|401626228|gb|EJS44184.1| rrp5p [Saccharomyces arboricola H-6]
          Length = 1726

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 376/1295 (29%), Positives = 618/1295 (47%), Gaps = 172/1295 (13%)

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
            I  G  K  +P  H++D        +   K G +    ++  N   N+ ++ K SL+N  
Sbjct: 533  IFNGQFKANVPALHISD--TRLVYPERKFKIGSKVKGRILSVNLRGNVHMTLKKSLVNIE 590

Query: 749  AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
            A + P       A  I   N      V      GC + F G L+GF P S+  +      
Sbjct: 591  ADESPLVSNYESAKEIKEKNEKTLATVQVFKPNGCVISFFGGLSGFLPNSEISEVFVKKP 650

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
             +   +GQ+V   +LDV+++  RI      + C  ++    Q+   +E  +         
Sbjct: 651  EEHLRLGQTVVVKLLDVDADRRRII-----ATCKVSNEQAAQQKDTIENIVP-------- 697

Query: 863  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES------ 916
            G  L      I  SVIE K  ES    V+V      ++ G I    L+ A +E       
Sbjct: 698  GRTL------ITVSVIE-KTKES----VIVEIP-GVNLRGVIYAGHLSDARIEQNRAQLK 745

Query: 917  ----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
                G+ +   ++D     R+ +++LK+  I   ++A            +   KD+ +H 
Sbjct: 746  KIRIGAELTGLVIDKDTRTRVFNMTLKSSLI---KDAKKKTLPLTYDDVKNIKKDVPMHA 802

Query: 973  TVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 1027
             + +I +    V  N  ++ L LP Y  ++    + D N      K F   QSV  TV  
Sbjct: 803  YIKSISDKGLFVAFNGKFIGLVLPSY--AVDSRDI-DIN------KTFYINQSV--TVYL 851

Query: 1028 LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD----------VGSLVQAEITEIKPL 1077
            L +     + LL LKA    E      +  +S  D          +GS+V+A+I  +K  
Sbjct: 852  LRTDDQNQKFLLSLKAPKVKEEKKQVESNIESPIDSSIKTWDDISIGSVVKAKIKSVKKN 911

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIA----KSNK---- 1127
            +L +      HGR+ I EV D    + +     S++K    +  +II     KS+K    
Sbjct: 912  QLNVILAANLHGRVDIAEVFDTYEEIKDKKQPLSHYKKDDVIQVKIIGNHDVKSHKFLPI 971

Query: 1128 -PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1186
               + K+ + ELS+KP  L   E  +K L E   + +G+ +TG+V         LTIS  
Sbjct: 972  THRISKASILELSMKPLELKSKETHTKTLEE---IKVGEELTGFVNNSSGNHLWLTISPV 1028

Query: 1187 LKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1245
            LKA++ +LD     +   E  +  F +G A+   V S++ E          F + I    
Sbjct: 1029 LKARISLLDLTENDTRFSENVESVFPLGSALQVKVASVDHE--------HGFINAIGKTH 1080

Query: 1246 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE-LKNICVSDPLS 1304
            VD+   +M T I   D + GR+  +      +++ +G  + G    T+ L +  +S   +
Sbjct: 1081 VDV---DMST-IKVADELPGRVLNVAEKY--VLLDLGNKVTGISFITDALDDFSISLKEA 1134

Query: 1305 GYDE-GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1363
              D+    +   VL ++   +    +ELSLRS+     S NS +                
Sbjct: 1135 FQDKINNVIPTTVLAVNAENK---KIELSLRSATPKSRSINSHN---------------- 1175

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D+    IV G +KNV  KG F+ LS+K++A V ++ LSD Y++  +K +   + V G+V+
Sbjct: 1176 DVKQGDIVDGIIKNVNDKGIFVYLSKKVEAFVPVTKLSDSYLKEWKKFYKPMQYVVGKVV 1235

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NL 1482
            +    S R+ +TL+ S+        + + S++  GDI  G +K V  +G+F+ ++NT N 
Sbjct: 1236 TCSEDS-RISLTLRESEV-NGDLKVLKSYSDIKAGDIFDGTVKNVTDFGVFVKLDNTVNA 1293

Query: 1483 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1542
             GL HV+E+++   +++  ++  G++VK  +LK + EK++ISL +K+S+F   A+    +
Sbjct: 1294 TGLAHVTEIADKKPEDLSVLFGVGDRVKAIVLKTNPEKKQISLSLKASHFSKGAETTSTT 1353

Query: 1543 SE---EESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV 1599
             +   E+ DE + +V  +N S   +N+S A +D D++  D           +A +P    
Sbjct: 1354 DQAEKEDEDEIMADV-DFNDS---DNASDA-EDQDIKVTD----------KKAEIPS--- 1395

Query: 1600 NLDDEQPDMDNGISQNQGHTDEAKTIDEK-----------NNRHAKKKEKEEREQEIRAA 1648
                      +G+S + G    A  +D+            N    KK + + R+++I   
Sbjct: 1396 ----------DGLSLSAGFDWTASILDQAQEEEESEEDQENFTENKKHKHKRRKEKIVQD 1445

Query: 1649 EERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1708
            +   +   AP +  +FERL+  +PNSS +W+ YMAF L ++++EKAR +AERAL+TIN R
Sbjct: 1446 KTIDINTRAPESVADFERLIIGNPNSSVLWMNYMAFQLQLSEIEKARELAERALKTINFR 1505

Query: 1709 EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLA 1768
            EE EKLNIW+A  NLEN +G   EE +  VF RA QY D   +H  LLG+YE + +   A
Sbjct: 1506 EEAEKLNIWIAMLNLENTFGT--EETLEDVFYRACQYMDSYIIHTKLLGIYEISAKLDKA 1563

Query: 1769 DELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFISQTAI 1826
             EL     KKF      +W+     L+   +E   + ++  AL SLP+  HI+ + + A 
Sbjct: 1564 AELFKTTAKKFGSEKPSIWVSWGDFLISHNEEQEARTILSNALKSLPKRSHIEVVRKFAQ 1623

Query: 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886
            LEF  G  +RGRS+FEG++++ PKR DLW++Y+DQE++  D   +  LFER I+  +  K
Sbjct: 1624 LEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIITKKITRK 1683

Query: 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            + KF F K+LE+E+S  +E+ +EYVK KA EYV S
Sbjct: 1684 QAKFFFNKWLEFEQSQSDEKAVEYVKAKATEYVTS 1718



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 323/1405 (22%), Positives = 592/1405 (42%), Gaps = 199/1405 (14%)

Query: 54   FPRGGGHSLTQRERDEIHAEV--DAEF--------EAVERGLHKKNKKKK--KKTERKAN 101
            FPRGG  +LT  E  ++  E   D  F        E   R L KK   K+   K   K+ 
Sbjct: 38   FPRGGSSALTPLELKQVANEAANDVLFGNENAKTTETSTRPLKKKKTTKEATSKDSDKSE 97

Query: 102  ETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG-- 159
             + ++ G          L  + N  TLKN   G  L G ++ + ++DL I    G+ G  
Sbjct: 98   TSSENSGEA-----KVNLVEHVNFKTLKN---GSSLLGQISGITKQDLCITFTDGISGYV 149

Query: 160  -LARAADALDPIL----------------------DNEIEANED--------NLLPTI-- 186
             L   +D    IL                      D E E+++D        N LP +  
Sbjct: 150  NLTHISDVFTSILEDLDEDMDSDAETADKTKSKGDDTEYESSDDEDEKNDKSNDLPNLKK 209

Query: 187  -FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 242
             FH+GQ + C V++   L+   K+  K++I L++  S +    S E + +   +   +KS
Sbjct: 210  YFHIGQWLRCSVIKNTFLEPATKKTKKKRIELTIEPSFV-NTYSDEDLVKSTSIQCAIKS 268

Query: 243  IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPD 301
            IEDHG IL  GLP FTGF+ + +++    +   PG +  G + +  DR+  V    SD  
Sbjct: 269  IEDHGAILDVGLPDFTGFIAKKDISNFENL--LPGAVFLGNITKKSDRSIVVNTNFSDKK 326

Query: 302  TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 361
                 ++      SID ++PG +V    ++I +NGV        +G +++ HL+ +F   
Sbjct: 327  NRITQIS------SIDAVIPGQIVDLLCETITKNGVSGKAFGLVSGVINVSHLR-SFSEE 379

Query: 362  NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDR 421
            + K+ +     +  RI+                 L N+   S  KV  +     ++R++ 
Sbjct: 380  DLKHKFAIGSSIRCRII---------------ACLENK---SGDKVLILSTLPHILRLED 421

Query: 422  GLGLLLDIPSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCV 463
             L     + + P+             S   Y+ + D     V    V ++E   K  S  
Sbjct: 422  SLKSTEGLDAFPIGYTFESCAVKGRDSDYLYLALDDDRLGKVHSSRVGEIENPEKLSS-- 479

Query: 464  RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGG 521
              R+LG+  ++ +          +      +D+  G +    ++ +V S G  ++ F G 
Sbjct: 480  --RVLGYSPVDDIYQLSTDPKYLKLKYLRTNDIPIGELAPSCEITSVSSSGIELKIFNGQ 537

Query: 522  VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAIL 577
             KA  P  H+S+  +V P +KFK+G+++  R+L V  +  + +T KK+LV     +  ++
Sbjct: 538  FKANVPALHISDTRLVYPERKFKIGSKVKGRILSVNLRGNVHMTLKKSLVNIEADESPLV 597

Query: 578  SSYAEATD----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
            S+Y  A +       T   +   + +GC + F+ G+ GF P SE+      +P     +G
Sbjct: 598  SNYESAKEIKEKNEKTLATVQVFKPNGCVISFFGGLSGFLPNSEISEVFVKKPEEHLRLG 657

Query: 634  QVVKCRIMSSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVY 688
            Q V  +++      RRI  +  +   + ++     +++V   +L++  V   T  +V+V 
Sbjct: 658  QTVVVKLLDVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTLITVSVIEKTKESVIVE 717

Query: 689  VIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLI 746
            +      +G I   HL+D  +E        I+ G E   L++  D  +    ++ K SLI
Sbjct: 718  IPGVNL-RGVIYAGHLSDARIEQNRAQLKKIRIGAELTGLVIDKDTRTRVFNMTLKSSLI 776

Query: 747  NSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
              A++  LP    D  +I  +  +H Y+ +I + G FV F G+  G    S AVD +  D
Sbjct: 777  KDAKKKTLPLTYDDVKNIKKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDID 836

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 861
            ++KT+Y+ QSV   +L  + +  +  LSLK            +E   +E  I     S  
Sbjct: 837  INKTFYINQSVTVYLLRTDDQNQKFLLSLKA-------PKVKEEKKQVESNI----ESPI 885

Query: 862  NGSELKWVEGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAG 911
            + S   W +   IGSV++ K+   + N   V+++   H         D Y  I   +   
Sbjct: 886  DSSIKTW-DDISIGSVVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEIKDKKQPL 944

Query: 912  ATVESGSVIQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            +  +   VIQ  I+   DV K+ + + ++ +         +    + + K+   +  +++
Sbjct: 945  SHYKKDDVIQVKIIGNHDV-KSHKFLPITHRISKASILELSMKPLELKSKETHTKTLEEI 1003

Query: 969  GVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 1027
             V + +   V     N+L L++ P     I    +++ +T +F +    N +SV     A
Sbjct: 1004 KVGEELTGFVNNSSGNHLWLTISPVLKARISLLDLTENDT-RFSE----NVESVFPLGSA 1058

Query: 1028 LP-SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIG 1086
            L    ++       + AI +T           S+  V   +   +  +    + L  G  
Sbjct: 1059 LQVKVASVDHEHGFINAIGKTHVDVD-----MSTIKVADELPGRVLNVAEKYVLLDLGNK 1113

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1146
              G   IT+  DD S  ++  F + KI   +   ++A  N  + K     ELS++ +   
Sbjct: 1114 VTGISFITDALDDFSISLKEAFQD-KINNVIPTTVLA-VNAENKK----IELSLRSATPK 1167

Query: 1147 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1206
               I S       DV  G  V G +  V+++   + +S+ ++A  F+  +    S L+E+
Sbjct: 1168 SRSINS-----HNDVKQGDIVDGIIKNVNDKGIFVYLSKKVEA--FVPVTKLSDSYLKEW 1220

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            ++ +   + V G V++ +++ + + L LR      S+   D+      + I  GDI  G 
Sbjct: 1221 KKFYKPMQYVVGKVVTCSEDSR-ISLTLRE-----SEVNGDLKVLKSYSDIKAGDIFDGT 1274

Query: 1267 ISKILSGVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
            +  +     G+ V++    +  G  H TE+ +    D    +  G  VK  VL+ +   +
Sbjct: 1275 VKNVTD--FGVFVKLDNTVNATGLAHVTEIADKKPEDLSVLFGVGDRVKAIVLKTNPEKK 1332

Query: 1325 GTFHVELSLRSS--LDGMSSTNSSD 1347
                + LSL++S    G  +T+++D
Sbjct: 1333 ---QISLSLKASHFSKGAETTSTTD 1354



 Score = 44.7 bits (104), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 13/158 (8%)

Query: 1375 VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
            + +V+S G  + + + +  A V   ++SD  +  PE++F IG  V GR+LSV  L   V 
Sbjct: 521  ITSVSSSGIELKIFNGQFKANVPALHISDTRLVYPERKFKIGSKVKGRILSVN-LRGNVH 579

Query: 1434 VTLKTSDSRT-ASQSEINNLSNLHVG-------DIVIGQIKRVESYGLFITIENTNLVGL 1485
            +TLK S     A +S +  +SN           +  +  ++  +  G  I+     L G 
Sbjct: 580  MTLKKSLVNIEADESPL--VSNYESAKEIKEKNEKTLATVQVFKPNGCVISFFG-GLSGF 636

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
               SE+SE  V   E   R G+ V VK+L VD ++RRI
Sbjct: 637  LPNSEISEVFVKKPEEHLRLGQTVVVKLLDVDADRRRI 674


>gi|226291917|gb|EEH47345.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb18]
          Length = 1780

 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 290/907 (31%), Positives = 482/907 (53%), Gaps = 93/907 (10%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARI 1121
            G + +A+I  +K  ++ ++      GRI ++E+ D  D     +     FK  Q +  RI
Sbjct: 912  GRITKAKIVSVKETQINVQLADNIQGRIDVSEIFDGWDAIKDRKQPLRYFKPKQIIPVRI 971

Query: 1122 I----AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
            I    A+S+K  P   +S    ++ELS KPS L   +I    L     V IG    G+V 
Sbjct: 972  IGIHDARSHKFLPISHRSGKYPVFELSAKPSSLESKDIE---LLSLDKVEIGSSWLGFVN 1028

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
             + ++   + I+ +++ +L I D + + S + +  + F +G A+  HV  +N +K  L L
Sbjct: 1029 NIGDDCLWINITPNVRGRLRITDVSDDLSLVGDVTKNFPVGSAIKVHVTGVNVDKNRLDL 1088

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
                     S K  D  N    +   +G+I+ GR++K+      ++VQ+     G ++  
Sbjct: 1089 ---------SAKHGDPLNKRTISDFSKGEILLGRVTKVSDR--QVLVQLSDTTVGAINL- 1136

Query: 1293 ELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1352
                I ++D  +      F K +VL +         V++  +  L  +S   S  LS+ +
Sbjct: 1137 ----IDMADDYTKVIPANFHKNEVLRVC-----ILDVDVPNKKIL--LSVRPSRVLSSSL 1185

Query: 1353 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1412
                  ++ I  L  N IV+G+V+ V + G F+ L  ++ A V +S+LSD Y++  + EF
Sbjct: 1186 PIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLSDSYLKDWQSEF 1245

Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1472
             + +LV GR++ V+  + +++++LK S      ++ I  + +L+ G IV G+++ VE +G
Sbjct: 1246 QVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAPIT-IRDLNRGQIVTGKVRSVEEFG 1304

Query: 1473 LFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1531
             FI I+ T NL GLCH +E++E  V++   ++  G+ VK KILK+D +K RISLG+K+SY
Sbjct: 1305 AFIVIDGTANLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHDKERISLGLKASY 1364

Query: 1532 FKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESR 1591
            FK         S+++SD    E G  N  S+ E+      +++ ES+D  S+    +   
Sbjct: 1365 FK--------ESDDKSDGENSEDG--NEQSVSESEDGGELELEFESDDDVSMGGVDLGGG 1414

Query: 1592 ASVPPLEVNLDDEQPDM----DNGIS----------QNQGHT--DEAKTIDEKNNRHAKK 1635
                  E N+ DE   M    D G++             G T  DEA      ++  A  
Sbjct: 1415 DGS---ESNVSDEDVQMAGTEDTGVTGGLVTSGFDWNGSGTTGADEANDSGSSSDGQAVL 1471

Query: 1636 KEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1695
            K+K+ R+ EI+      L+   P++  ++ERL+   P+SS +W+KYMAF L +++V+KAR
Sbjct: 1472 KKKKRRKPEIQVDRTGDLDAHGPQSIADYERLLLGEPDSSLLWLKYMAFQLELSEVDKAR 1531

Query: 1696 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1755
             IAERAL++I I ++ EK NIW+A  NLEN +GN  ++++  VF+RA QY DP+++H  +
Sbjct: 1532 EIAERALRSIRIGQDAEKFNIWIAMLNLENIFGN--DDSLEDVFKRACQYNDPQEIHERM 1589

Query: 1756 LGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRL---LKQQQEGVQAVVQRALLS 1811
              +Y ++ +N+ ADEL    + KKF  S  +++     L   L   Q G +A++ RA+ S
Sbjct: 1590 TSIYIQSGKNEKADELFQTTLKKKFTQSPNIYINYATFLFDTLADPQRG-RALLPRAIQS 1648

Query: 1812 LPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1869
            LP H H+   S+   LEF+  NG  +RGR++FE +LS +PKR DLW++ LD EI+ GD +
Sbjct: 1649 LPAHTHVDITSKFGQLEFRSPNGDIERGRTVFEALLSSFPKRVDLWNVLLDLEIKNGDAE 1708

Query: 1870 LIRGLFERAISLS--------------LPPKKMKFLFKKYLEYEKSV--GEEERIEYVKQ 1913
             +R LFER + L               L  K+ KF FKK+L +E+ V  G E+ ++ VK 
Sbjct: 1709 QVRRLFERVLGLGHGIAADGTKTGPKRLKDKQAKFFFKKWLAFEEKVGGGNEKMVDEVKA 1768

Query: 1914 KAMEYVE 1920
            +A  YV+
Sbjct: 1769 RAAAYVK 1775



 Score =  154 bits (390), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 209/888 (23%), Positives = 365/888 (41%), Gaps = 100/888 (11%)

Query: 9   QKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERD 68
           Q+K +K G       K+Q +NS+   +   +A  +++  +++ P+FPRGGG+ LT  E+ 
Sbjct: 30  QRKGAKGG------KKSQAENSRDSSDLPSKAPAVSVLREEE-PMFPRGGGNILTPLEQK 82

Query: 69  EIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISG----------- 117
           +I  +   +    + G   +      + +R   ++    G       S            
Sbjct: 83  QIQIQATRDVLFEQNGAAGQQDDNMDEADRGHKKSGKSSGVKVKKVKSKAKKQAASEDPT 142

Query: 118 KLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNE 174
           K       +  K I  G K+ G V+ +N  D+ + LP  L G   L   +      ++  
Sbjct: 143 KQAVRIEGLNFKRIVIGSKVLGQVSSINAHDIGLSLPNNLTGYVPLTSISRTFQQKIEKL 202

Query: 175 IEANEDN---------------LLPTIFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSL 216
           + +NED                 L + F +GQ +   V   + + K     GK+ I LS+
Sbjct: 203 LNSNEDENEGSDDGDSDDEEDLDLKSYFELGQYLRASVTATESETKNPQTKGKKHIQLSV 262

Query: 217 RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI-D 273
                  GLS   +     + A V S+EDHG ++  GL      GF+    +  +  +  
Sbjct: 263 DPRDANSGLSKSDMVVNTTVQASVVSVEDHGLVMDLGLDDGQTKGFMSSKEIPPDLEVSQ 322

Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSD-PDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQS 331
           +K G +   VV   +    VV LS++ P   S   +  L    +I+  +PG      +  
Sbjct: 323 IKEGSVFLCVVTGHNANGSVVKLSANLPAAGSIKKSHYLTSAPTINSFLPGTAAEILLNE 382

Query: 332 ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT--SRAVGL 389
           +   G+    +      VD+    +T  T N    Y+   K+  R++   PT     +G 
Sbjct: 383 VTSTGMAGKIMGMLDAVVDLVQSGSTTGTENLTTKYHVGAKIKGRLICTFPTVEPSKLGF 442

Query: 390 TL-------NPYLLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT 441
           ++       +P +L   +    +  V  I  ++KV +V+ GLG+ +   +          
Sbjct: 443 SILEHVVKFSPTVLEQYSTSEDIPAVSAIVPEAKVTKVEPGLGVYVQFNNKHYGFVHISR 502

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV 501
           +SD   + +   +  YK  S    RI+GF  L+ L     +    +       DV  G V
Sbjct: 503 LSDDKVDSISATQGPYKVDSTHEARIVGFSALDNLYLLSFERKVIDQPFLRLEDVTVGAV 562

Query: 502 VKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           VKGK+       D   G IV    G+  L P  H+S+ ++  P +KF+ G ++  R+L V
Sbjct: 563 VKGKIEKLLTGPDGIDGLIVSLADGISGLVPRMHLSDTKLQHPERKFREGTQVSARILSV 622

Query: 557 --KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
             + +++ +T KK+L+ S+      Y++      + G I  I  HG  V+FY  V+    
Sbjct: 623 NLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQSPGTIISIHPHGAIVQFYGEVR---- 678

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 674
                     E   +     VV C+  S+   + + N    ++P           G LVS
Sbjct: 679 ----------EVRKL-----VVSCKDPSTSTETYK-NAFENIQP-----------GDLVS 711

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDN 732
             V   +   +++ +   G     +  EH+ D    +H + + + I+ G +   L++L  
Sbjct: 712 CTVFEKSKEVILLRLEGSGLV-ARLNAEHVTDGQSSKHGSAL-ACIRVGQKLHDLVILSM 769

Query: 733 ESSNLLL--SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
           +  + L+  S K SL  + Q  +LP+        S V G+V NII  G FV FL  LTGF
Sbjct: 770 QKVHRLIKVSNKPSLKQARQRGELPAKFEDFQEGSKVTGFVKNIIADGLFVEFLRGLTGF 829

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            P+    D   A     Y + Q++ S +  +  +  R TLS+K++  S
Sbjct: 830 LPKRLMDDDHVAKPDFGYTLSQTISSFVHSIEDDRQRFTLSMKENQTS 877



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 118/507 (23%), Positives = 203/507 (40%), Gaps = 119/507 (23%)

Query: 1068 QAEITEIKP-LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 1126
            +A++T+++P L + ++F    +G +HI+ ++DDK + +      +K+  T  ARI+  S 
Sbjct: 474  EAKVTKVEPGLGVYVQFNNKHYGFVHISRLSDDKVDSISATQGPYKVDSTHEARIVGFSA 533

Query: 1127 KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1186
              +     L+ LS +  ++       +      DV++G  V G + K      LLT    
Sbjct: 534  LDN-----LYLLSFERKVI------DQPFLRLEDVTVGAVVKGKIEK------LLTGPDG 576

Query: 1187 LKAQLFILD---SAYEP------SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            +   +  L    S   P      ++LQ  +R+F  G  V+  +LS+N EK+ LRL L+  
Sbjct: 577  IDGLIVSLADGISGLVPRMHLSDTKLQHPERKFREGTQVSARILSVNLEKRQLRLTLKK- 635

Query: 1238 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-----LYGRVHFT 1292
                      + N     +    DI+ G  S       G ++ I PH      YG V   
Sbjct: 636  ---------SLLNSESPAWKEYSDILPGNQSP------GTIISIHPHGAIVQFYGEVR-- 678

Query: 1293 ELKNICVS--DPLSGYDE----------GQFVKCKVLEISRTV-----RGTFHV-ELSLR 1334
            E++ + VS  DP +  +           G  V C V E S+ V      G+  V  L+  
Sbjct: 679  EVRKLVVSCKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEGSGLVARLNAE 738

Query: 1335 SSLDGMSSTNSSDLST-------------------------------DVDTPGKHLEKIE 1363
               DG SS + S L+                                     G+   K E
Sbjct: 739  HVTDGQSSKHGSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKFE 798

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D      V G+VKN+ + G F+   R L   +    + D +V  P+  + + + ++  V 
Sbjct: 799  DFQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFVH 858

Query: 1424 SVEPLSKRVEVTLK---TSDSR---------TASQSEIN-------NLSNLHVGDIVIGQ 1464
            S+E   +R  +++K   TS  R          A+Q+ IN       +  +L  G I   +
Sbjct: 859  SIEDDRQRFTLSMKENQTSKQRVSDNARPASNANQASINPVDGDIKSFDDLTFGRITKAK 918

Query: 1465 IKRVESYGLFITIENTNLVGLCHVSEL 1491
            I  V+   + + + + N+ G   VSE+
Sbjct: 919  IVSVKETQINVQLAD-NIQGRIDVSEI 944



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 41/252 (16%)

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVR 780
            +L +D  +  +LLS + S + S+  LP         S +  N +V G+V  +   G FV 
Sbjct: 1161 ILDVDVPNKKILLSVRPSRVLSSS-LPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVT 1219

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
                +T +   S   D    D    + V Q V   I+ V++E  ++ +SLK+S       
Sbjct: 1220 LGHEVTAYVRISDLSDSYLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESV------ 1273

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
              ++ ++     I  L                  G ++ GKV    +FG  +  +  +++
Sbjct: 1274 --LEPNYKAPITIRDLNR----------------GQIVTGKVRSVEEFGAFIVIDGTANL 1315

Query: 901  YGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
             G     ++A   VE        G +++A IL +   +  + L LK  +   F+E++   
Sbjct: 1316 SGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHDKERISLGLKASY---FKESDDKS 1372

Query: 954  QAQKKKRKREAS 965
              +  +   E S
Sbjct: 1373 DGENSEDGNEQS 1384



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 80/374 (21%), Positives = 157/374 (41%), Gaps = 31/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            ++L  +  G    G V  + +  L I +   +RG  R  D  D + L  ++  N      
Sbjct: 1012 LSLDKVEIGSSWLGFVNNIGDDCLWINITPNVRGRLRITDVSDDLSLVGDVTKN------ 1065

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F VG  +   V  ++ DK      ++ LS +        ++    +G +L   V  + 
Sbjct: 1066 --FPVGSAIKVHVTGVNVDKN-----RLDLSAKHGDPLNKRTISDFSKGEILLGRVTKVS 1118

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR----SIDRTRKVVYLSSDP 300
            D   ++     +  G +   ++A++    +        V+R     +D   K + LS  P
Sbjct: 1119 DRQVLVQLS-DTTVGAINLIDMADDYTKVIPANFHKNEVLRVCILDVDVPNKKILLSVRP 1177

Query: 301  DTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              V  S    +D +  SI  L    +V   V+ +  NG+ ++     T  V I  L +++
Sbjct: 1178 SRVLSSSLPIEDPEIKSISQLKVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLSDSY 1237

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPSHVKVGDIYDQSKV 416
               +W++++   + V+ RI+FVD  +  + ++L   +L  + +AP   + + D+     V
Sbjct: 1238 -LKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAP---ITIRDLNRGQIV 1293

Query: 417  ---VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
               VR     G  + I  T  +       +++AE++V    K +++G  V+ +IL   H 
Sbjct: 1294 TGKVRSVEEFGAFIVIDGT-ANLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHD 1352

Query: 474  EGLATGILKASAFE 487
            +   +  LKAS F+
Sbjct: 1353 KERISLGLKASYFK 1366



 Score = 45.1 bits (105), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 111/288 (38%), Gaps = 68/288 (23%)

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF--EGLVFT-HSDVKPGMV 501
           +++ +++  E+K++EG+ V  RIL     +      LK S    E   +  +SD+ PG  
Sbjct: 597 LSDTKLQHPERKFREGTQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQ 656

Query: 502 VKGKVIAVDSFGAIVQFPGGVKAL------CPLPHMS------EFEIVKPGKKFKV---- 545
             G +I++   GAIVQF G V+ +      C  P  S       FE ++PG         
Sbjct: 657 SPGTIISIHPHGAIVQFYGEVREVRKLVVSCKDPSTSTETYKNAFENIQPGDLVSCTVFE 716

Query: 546 -----------GAELVFRVL------GVKSKR---------------------------I 561
                      G+ LV R+       G  SK                            I
Sbjct: 717 KSKEVILLRLEGSGLVARLNAEHVTDGQSSKHGSALACIRVGQKLHDLVILSMQKVHRLI 776

Query: 562 TVTHKKTL--VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
            V++K +L   + +  + + + +  +     G++  I   G FV F  G+ GF P+  + 
Sbjct: 777 KVSNKPSLKQARQRGELPAKFEDFQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMD 836

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT---RVSED 664
            D   +P   Y + Q +   + S     +R  LS     T   RVS++
Sbjct: 837 DDHVAKPDFGYTLSQTISSFVHSIEDDRQRFTLSMKENQTSKQRVSDN 884



 Score = 43.9 bits (102), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 117/268 (43%), Gaps = 35/268 (13%)

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
             +++K+  G+G + VQ     YG VH + L +                  KV  IS T +
Sbjct: 475  AKVTKVEPGLG-VYVQFNNKHYGFVHISRLSD-----------------DKVDSISAT-Q 515

Query: 1325 GTFHVELSLRSSLDGMSS-TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS--- 1380
            G + V+ +  + + G S+  N   LS +     +   ++ED++   +V+G ++ + +   
Sbjct: 516  GPYKVDSTHEARIVGFSALDNLYLLSFERKVIDQPFLRLEDVTVGAVVKGKIEKLLTGPD 575

Query: 1381 --KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
               G  + L+  +   V   +LSD  ++ PE++F  G  V+ R+LSV    +++ +TLK 
Sbjct: 576  GIDGLIVSLADGISGLVPRMHLSDTKLQHPERKFREGTQVSARILSVNLEKRQLRLTLKK 635

Query: 1439 S--DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI-----ENTNLVGLCHVSEL 1491
            S  +S + +  E    S++  G+   G I  +  +G  +       E   LV  C     
Sbjct: 636  SLLNSESPAWKE---YSDILPGNQSPGTIISIHPHGAIVQFYGEVREVRKLVVSCKDPST 692

Query: 1492 SEDHVDNIETIYRAGEKVKVKILKVDKE 1519
            S +   N     + G+ V   + +  KE
Sbjct: 693  STETYKNAFENIQPGDLVSCTVFEKSKE 720


>gi|296804114|ref|XP_002842909.1| rRNA biogenesis protein RRP5 [Arthroderma otae CBS 113480]
 gi|238845511|gb|EEQ35173.1| rRNA biogenesis protein RRP5 [Arthroderma otae CBS 113480]
          Length = 1819

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 381/1412 (26%), Positives = 656/1412 (46%), Gaps = 195/1412 (13%)

Query: 610  QGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            QGF   S L    +D        Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 498  QGFVHLSRLADERVDSIYSSEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 554

Query: 667  VKL-----GSLVSGVVDV--VTPNAVVVYVIA-KGYSKGTIPTEHLAD-HLEHATVMKSV 717
            ++L     GS V G ++   + P  +   +++      G +P  H+AD  L+H    +  
Sbjct: 555  LRLEDVTVGSTVKGKIEKLHIGPEGIDGLIVSLTDKISGLVPGMHMADTKLQHP---EKK 611

Query: 718  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
             + G +   ++L +D +   L L+ K SL+NS      D  +I   +   G +  I   G
Sbjct: 612  FREGLKVSVRVLSVDLQKHQLRLTMKKSLLNSESAPWKDYENISAGNRSPGTLIKIQNNG 671

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              V+F G + GF P S+  +   +D S+ + VGQ V  + L V+ E G++ +S K     
Sbjct: 672  AVVQFYGPVRGFLPVSEMSEAYISDPSQHFTVGQVVNVHALSVDPENGKLVVSCKDPATV 731

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            + D    Q  F   EKI                     G V+ G V E +   +++  ++
Sbjct: 732  TAD---YQTAF---EKIRP-------------------GLVVSGTVFEKSSDDLLIKLQD 766

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAA----------ILDVAKAERLVDLSLKTVFIDRF 946
               V    + H   G+  +  S +             +  V K  RL+ ++ +       
Sbjct: 767  SGLVARLNSDHISDGSASKRASALNRIRVGQKMDGLLVYKVKKTHRLIQVTNRVTL---- 822

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDY 1005
                  ++A  + R     +D+     V  ++  I+ E   V  L      I    V D 
Sbjct: 823  ------KEAAAEGRLPAKFEDIKHGLKVTGLIRNIIPEGIFVEFLDNLTGLIPKRLVDDD 876

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSS---- 1060
            +  + P   +   Q + +TV A+   S   R LL LK + ++ ETS +  A +K +    
Sbjct: 877  HISR-PDFGYSRSQVLSSTVCAVQEDSE--RFLLSLKPVGKSKETSEAGSAPEKKTTARP 933

Query: 1061 --------------YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE- 1105
                            +G + +A+IT +K  +L +       GRI ++E+ D   ++ + 
Sbjct: 934  LTNPVDEELKSMEDITLGKVTKAKITSVKDTQLNVIIAENVQGRIDVSEIFDSWEDIKDR 993

Query: 1106 -NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLL 1155
             +    F   Q +  R++   +  + K         K  ++ELS KPS L        L 
Sbjct: 994  KHPLQIFHSKQILPVRVLGIHDARNHKFLPISHRSGKVSVYELSAKPSCLEAPTF-EPLH 1052

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             E   + +G    GYV  +  +   L IS +++ +L I D + + S     Q+ F +G A
Sbjct: 1053 LER--LKVGDIHIGYVNNIAEDCLWLNISPNVRGRLRITDISDDMSVRGNIQKHFPVGSA 1110

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   V  ++ EK  L L  +    G + KT+ ++N      + +G I+ GR++K+     
Sbjct: 1111 IKVAVAGVDTEKNRLDLSAKI---GDTAKTLTVAN------LSKGMILLGRVTKVTDH-- 1159

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
             ++VQI  ++ G V   ++     +D  +  +   F K + L +         V++ + +
Sbjct: 1160 QVLVQINDNVVGVVSLIDM-----ADDYTKVNPTNFHKNEALRVCV-------VDVDIPN 1207

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
                 S   S  LS+ +      +  I  L    IV+G+++ V + G F+ L   + A +
Sbjct: 1208 KKIYFSVRPSKILSSSLPVEDPEITSINQLRVGQIVRGFIRRVDNIGVFVTLGHNVSAYI 1267

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1455
             +S+LSD Y++  + EF + +LV GR+  V+  S ++++TLK S +   +      L +L
Sbjct: 1268 RVSDLSDSYLKEWKDEFQVDQLVQGRITLVDKESNKIQMTLKKS-ALDPNYKPPFTLKDL 1326

Query: 1456 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
             VG IV G++++VE YG FI I+ + NL GLCH SE++E  V++   +Y   + VK KIL
Sbjct: 1327 KVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKIL 1386

Query: 1515 KVDKEKRRISLGMKSSYFKN--------------DADNLQMSSEEESDEAIEEVG-SYNR 1559
            KVD EK +I+LG+K+SYF +              +A  +++ +E++SDE     G   + 
Sbjct: 1387 KVDLEKCQIALGLKASYFNDLPAEEESEDSGNDDNAGGIKLHAEDDSDEDTSMGGVDIDG 1446

Query: 1560 SSLLENSSVAVQDMDMESEDG------GSLVLAQIESRASVPPLEVNLDDEQPDMDNGIS 1613
                EN      D D++ ED       G LV +  +             D+Q   D+  +
Sbjct: 1447 EDEEENGDEGESDDDVQMEDAADDTKKGGLVTSGFDWTGD------GDKDKQEVPDDSSA 1500

Query: 1614 QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPN 1673
            ++ G T                K K+ R+ EI+  +   L+ + P++  ++ERL+   P+
Sbjct: 1501 EDDGTT----------------KRKKRRKAEIQVDKTGDLDANGPQSVADYERLLLGEPD 1544

Query: 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733
            SS +W+KYMAF L + +V+KAR IA+RAL+T++I ++ EKLN+WVA  NLEN +GN  ++
Sbjct: 1545 SSLLWLKYMAFQLELGEVDKAREIADRALRTMSIGQDTEKLNVWVARLNLENTFGN--DD 1602

Query: 1734 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793
            ++ +VF+ A +Y D  +++  +  ++ ++ + + ADEL    +KK   S   +       
Sbjct: 1603 SLEEVFKSACEYNDAHEIYDRMASIFIQSGKTEKADELFQAALKKKVSSTPDFFLNYANF 1662

Query: 1794 LKQQQEGVQA---VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEY 1848
            L    E  Q    ++ RAL SLP H H++  S+   LEF+  NG  +RGR++FEG+LS +
Sbjct: 1663 LFDTMEAPQRGRDLLPRALQSLPPHTHVEVTSRFGQLEFRSPNGDIERGRTVFEGLLSSF 1722

Query: 1849 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS----------------LPPKKMKFLF 1892
            PKR DLW++ LD EI++GD + +R LFER + +                 L  K+ KFLF
Sbjct: 1723 PKRIDLWNVLLDLEIKVGDEEQVRRLFERVLGIGHGVVAADGSKEGPKKKLKEKQAKFLF 1782

Query: 1893 KKYLEYEKSV---GEEERIEYVKQKAMEYVES 1921
            KK+L +E+ +   G+ + ++ VK +A +YV S
Sbjct: 1783 KKWLAFEEKIASDGDLKMVDEVKARAADYVRS 1814



 Score =  232 bits (591), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 336/1418 (23%), Positives = 592/1418 (41%), Gaps = 156/1418 (11%)

Query: 9    QKKSSKDGPKFNKASKNQF-----------KNSKKQINDAVEAQDLALPPDDDVPVFPRG 57
            +KK+  D  + N ASK++            K SK   + A +A  +++  D+  P FPRG
Sbjct: 20   KKKTKVDAKELNGASKSKKPKEHKEPKEASKASKSDTSTAPKAAPISILRDEQ-PAFPRG 78

Query: 58   GGHSLTQRERDEIHAEVD------------AEF-----EAVERGLHKKNKKKKKKTERKA 100
            G   LT  ER +I  +              AEF     E   + L  K     K  +RKA
Sbjct: 79   GNSVLTPLERKQIQIQATKDVLFEQNGKNGAEFANSDDEGSMKELEDKKDTYTKPKKRKA 138

Query: 101  NET-VDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG 159
              T   D  +    G+          +T K I+ G K+ G V+ +   D+ + LP  L G
Sbjct: 139  KSTKAKDEPAAAKQGVK------VESLTYKRIAVGSKILGQVSSIGIHDISLALPNNLTG 192

Query: 160  LARAADALDPILDNEIEA--NEDNL-----------LPTIFHVGQLVSCIVLQL---DDD 203
                  A+   L  ++EA    DN            L     VGQ +   V      D+D
Sbjct: 193  FVPLT-AISKTLTQKVEALLGNDNSEDEDDEDDDFELKDFVKVGQYLRASVTSTTRDDED 251

Query: 204  KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFL 261
            KK   K++I LS+       GL+   +     + A V S+EDHG I+  GL      GF+
Sbjct: 252  KKVKNKKRIELSIEPHAANSGLTKADMVVNATVQASVASVEDHGLIMDLGLDDSETKGFV 311

Query: 262  PRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISI 316
                L   +G+D   VK G +   +V   + +  VV LS+D  + +            +I
Sbjct: 312  SSRELP--AGVDISTVKEGSVFLCIVTGQNASGTVVKLSADLASAASVKKAHFLNTAPTI 369

Query: 317  DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
            +  +PG      +  +   G++   +      VDI H   +    +    Y+   K+  R
Sbjct: 370  NAFLPGTAAEVLITEVTPRGLVGKIMGMLNAVVDIVHSGASDGKKDLTTKYHVGAKIKGR 429

Query: 377  ILFVDPTSRAV--GLTLNPYLLH------------NRAPPSHVKVGDIYDQSKVVRVDRG 422
            ++   P+S  +  G ++   +L             N AP     + DI  + KV  VD  
Sbjct: 430  LITTYPSSDPIKLGFSILDSVLKFSPTATLTSGDDNDAP----SISDIIPEVKVTYVDSS 485

Query: 423  LGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATG 479
            LGL + + ST      +V +S +A+E V  +   E  YK GS    RI+GF  ++ L   
Sbjct: 486  LGLYVQLGSTKYQ--GFVHLSRLADERVDSIYSSEGPYKVGSTHEGRIIGFSAMDNLFLV 543

Query: 480  ILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEF 534
             L+    E       DV  G  VKGK+    I  +   G IV     +  L P  HM++ 
Sbjct: 544  SLEPKIIEQPFLRLEDVTVGSTVKGKIEKLHIGPEGIDGLIVSLTDKISGLVPGMHMADT 603

Query: 535  EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW 592
            ++  P KKF+ G ++  RVL V  +  ++ +T KK+L+ S+ A    Y   +    + G 
Sbjct: 604  KLQHPEKKFREGLKVSVRVLSVDLQKHQLRLTMKKSLLNSESAPWKDYENISAGNRSPGT 663

Query: 593  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
            + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQVV    +S  P + ++ +
Sbjct: 664  LIKIQNNGAVVQFYGPVRGFLPVSEMSEAYISDPSQHFTVGQVVNVHALSVDPENGKLVV 723

Query: 653  SFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD- 706
            S    P  V+ D     + ++ G +VSG V   + + +++ +   G     + ++H++D 
Sbjct: 724  S-CKDPATVTADYQTAFEKIRPGLVVSGTVFEKSSDDLLIKLQDSGLV-ARLNSDHISDG 781

Query: 707  -HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHP 761
               + A+ +   I+ G + D LLV   + ++ L+  + + +L  +A +  LP+    I  
Sbjct: 782  SASKRASALNR-IRVGQKMDGLLVYKVKKTHRLIQVTNRVTLKEAAAEGRLPAKFEDIKH 840

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
               V G + NII  G FV FL  LTG  P+    D   +     Y   Q + S +  V  
Sbjct: 841  GLKVTGLIRNIIPEGIFVEFLDNLTGLIPKRLVDDDHISRPDFGYSRSQVLSSTVCAVQE 900

Query: 822  ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
            ++ R  LSLK    S   +   +     E+K      +     ELK +E   +G V + K
Sbjct: 901  DSERFLLSLKPVGKSKETS---EAGSAPEKKTTARPLTNPVDEELKSMEDITLGKVTKAK 957

Query: 882  VHESNDFGVVVSFEEHS----------DVYGFITHHQLAGATVESGSVIQAAILDV--AK 929
            +    D  + V   E+           D +  I   +       S  ++   +L +  A+
Sbjct: 958  ITSVKDTQLNVIIAENVQGRIDVSEIFDSWEDIKDRKHPLQIFHSKQILPVRVLGIHDAR 1017

Query: 930  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 989
              + + +S ++  +  +  +      +    +    + L V       V  + E+ L L+
Sbjct: 1018 NHKFLPISHRSGKVSVYELSAKPSCLEAPTFEPLHLERLKVGDIHIGYVNNIAEDCLWLN 1077

Query: 990  L-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET 1047
            + P     +    +S D + +   QK F  G ++   V  + +     RL L  K     
Sbjct: 1078 ISPNVRGRLRITDISDDMSVRGNIQKHFPVGSAIKVAVAGVDTEKN--RLDLSAKIGDTA 1135

Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
            +T +     K      G ++   +T++   ++ ++      G + + ++ DD + V    
Sbjct: 1136 KTLTVANLSK------GMILLGRVTKVTDHQVLVQINDNVVGVVSLIDMADDYTKVNP-- 1187

Query: 1108 FSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS----- 1162
             +NF   + +   ++   + P+ K  F    S++PS +    + S L  E+ +++     
Sbjct: 1188 -TNFHKNEALRVCVV-DVDIPNKKIYF----SVRPSKI----LSSSLPVEDPEITSINQL 1237

Query: 1163 -IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
             +GQ V G++ +VDN    +T+  ++ A  +I  S    S L+E++  F + + V G + 
Sbjct: 1238 RVGQIVRGFIRRVDNIGVFVTLGHNVSA--YIRVSDLSDSYLKEWKDEFQVDQLVQGRIT 1295

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
             ++KE   +++ L+      + K      D     +  G IV G++ K+      + +  
Sbjct: 1296 LVDKESNKIQMTLKKSALDPNYKPPFTLKD-----LKVGQIVTGKVRKVEEYGAFIAIDG 1350

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
              +L G  H +E+    V D    Y++   VK K+L++
Sbjct: 1351 SANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKILKV 1388



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 154/362 (42%), Gaps = 29/362 (8%)

Query: 139  GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 198
            G V  + E  L + +   +RG  R  D  D   D  +  N    +   F VG  +   V 
Sbjct: 1064 GYVNNIAEDCLWLNISPNVRGRLRITDISD---DMSVRGN----IQKHFPVGSAIKVAVA 1116

Query: 199  QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 258
             +D +K      ++ LS ++    K L++  + +GM+L   V  + DH  ++     +  
Sbjct: 1117 GVDTEK-----NRLDLSAKIGDTAKTLTVANLSKGMILLGRVTKVTDHQVLVQIN-DNVV 1170

Query: 259  GFLPRNNLAEN----SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLK 312
            G +   ++A++    +  +      L+  V  +D   K +Y S  P  +  S    +D +
Sbjct: 1171 GVVSLIDMADDYTKVNPTNFHKNEALRVCVVDVDIPNKKIYFSVRPSKILSSSLPVEDPE 1230

Query: 313  GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 372
              SI+ L  G +V   ++ +   GV ++     +  + +  L +++    WK+++   + 
Sbjct: 1231 ITSINQLRVGQIVRGFIRRVDNIGVFVTLGHNVSAYIRVSDLSDSY-LKEWKDEFQVDQL 1289

Query: 373  VNARILFVDPTSRAVGLTLNPYLLH-NRAPP---SHVKVGDIYDQSKVVRVDRGLGLLLD 428
            V  RI  VD  S  + +TL    L  N  PP     +KVG I    KV +V+   G  + 
Sbjct: 1290 VQGRITLVDKESNKIQMTLKKSALDPNYKPPFTLKDLKVGQIV-TGKVRKVEE-YGAFIA 1347

Query: 429  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI-LKASAFE 487
            I  +  +       S++AE+ V    + Y++   V+ +IL    LE     + LKAS F 
Sbjct: 1348 IDGS-ANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKILKV-DLEKCQIALGLKASYFN 1405

Query: 488  GL 489
             L
Sbjct: 1406 DL 1407


>gi|336469521|gb|EGO57683.1| hypothetical protein NEUTE1DRAFT_122065 [Neurospora tetrasperma FGSC
            2508]
 gi|350290834|gb|EGZ72048.1| nucleic acid-binding protein [Neurospora tetrasperma FGSC 2509]
          Length = 1774

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 379/1393 (27%), Positives = 663/1393 (47%), Gaps = 184/1393 (13%)

Query: 608  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTR 660
            GV GF   S +    +D   E S  Y VG V   R++  ++      I+L  S + +P  
Sbjct: 465  GVSGFVHISRVKDGKVDALFENSGPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFL 524

Query: 661  VSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 715
              ED  + +G++VSGVV+ +  NA     ++  IA G S G +P  H AD HL++    +
Sbjct: 525  RIED--IPVGAVVSGVVEKMVVNAAGVGGLIVKIADGIS-GLVPEMHFADVHLQNP---E 578

Query: 716  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNI 772
               + G +   ++L  D  S  + L+ K +L+NS   LP+  S+  I       G + N+
Sbjct: 579  KKFREGLKVKARVLSTDAASRQIRLTLKKTLVNS--DLPAIQSYEQIAVGQQALGTIINV 636

Query: 773  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            ++ G  V+F GRL GF P S+  +    D  + + VGQ+V   ++  + +  ++ +S K 
Sbjct: 637  LQHGAIVQFYGRLRGFLPVSEMSEAYIQDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKD 696

Query: 833  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
                          F LE+++A+              +   IG V+  KV +  D  V V
Sbjct: 697  PSA-----------FGLEKQLAL--------------KKLQIGDVVSAKVTQKTDDDVFV 731

Query: 893  SFEEHSDVYGFITHHQLAGATVE-----------SGSVIQAAILDVAKAERLVDLSLKTV 941
               + S +   +    L   +V            + ++ +  IL+  +A R + LS K  
Sbjct: 732  ELADSS-LKAILPVAHLTDKSVSKTQSALKKIHVNQTLAELVILEKNEARRSIILSQKPS 790

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYA 1000
             +   +E          +   E S   G  + + A    V+    L   LP+        
Sbjct: 791  LVKASKEGKFLTTLDGARVGDEVS---GYVRNITATAVFVQFGGKLTALLPK-------- 839

Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE----TETSSSKRA- 1055
            S+     Q  P       QSV   + ++  ++   RL++ +   +E     ET   K A 
Sbjct: 840  SMIPREEQDKPDFGMFKSQSVTVKITSV--NTELNRLVVAIPGAAEQVKKVETKGEKVAN 897

Query: 1056 ---KKKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENL 1107
               +  ++ D   +G L +A I  +K  +L ++      GRI +++V D    +   +  
Sbjct: 898  PVDESITTLDDISIGKLTKARIVSVKDTQLNVQLADNIQGRIDVSQVYDSWEQIKDTKKP 957

Query: 1108 FSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEEC 1159
               F+  Q V  R++    A++++  P   +S   + ELS KPS +        L F+  
Sbjct: 958  LKKFQPNQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEGASSEPLSFD-- 1015

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G    G+V  V      + +S  ++ ++  ++++ + S L    + F IG A+   
Sbjct: 1016 NLKVGSSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSALRVR 1075

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            V+S++ E K L L  R    G  D   +++ D     I +  I+ G+++K+      ++V
Sbjct: 1076 VVSVDAESKRLDLSAR--SPGSED---ELTWDK----IAQDVILVGKVTKVDER--QVIV 1124

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
            ++   L G VH  +L +       + + + + V+  V+E+ ++ +    + LS R S   
Sbjct: 1125 KLSESLAGPVHKIDLVDDYEEANPAKFAKNEIVRVAVVEVDKSNK---RIRLSTRPS--- 1178

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
                    L++ +    K + +   L    I++G+VKNV+ KG F+ L   + A V + N
Sbjct: 1179 ------RILNSSLPVKDKEITQNTKLEVGDIIRGFVKNVSDKGLFVTLGGNVTAFVQIKN 1232

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1459
            LSD Y++  +++F + +LV GR++SV   + R+E++LK S         +  +S+L  G 
Sbjct: 1233 LSDAYLKYWKEQFQVDQLVKGRIISVA--NGRIEMSLKPS-VVDKDYVPLTTISDLKEGQ 1289

Query: 1460 IVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             + G++++VE +G FI I+ + NL GLCH SE+S+  V +   +Y  G+KVK K+LKVD 
Sbjct: 1290 TITGRVRKVEEFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEGDKVKAKVLKVDV 1349

Query: 1519 EKRRISLGMKSSYFKNDADNLQMSSE----------------EESDEAIEEVGSYN---- 1558
              +RI+L +K SYF    D  +M  +                 ++D+A++  G+ N    
Sbjct: 1350 TAKRINLSLKPSYFGEQDDEDEMDVDEEDAEDSEGDDSDEDMSDADDAVQITGTDNVEDE 1409

Query: 1559 RSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGH 1618
                 E S V + D D++  + G                           D   S   G 
Sbjct: 1410 SEDEDEASDVEMVDADVKGLEAGGF-------------------------DWSASLEDGE 1444

Query: 1619 TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1678
              +A   D +      KK+K  RE ++   +   L+ D P+T  ++ERL+   PNSS +W
Sbjct: 1445 KADASAADLE---ALAKKKKARREPQVTVDKTASLDVDGPQTASDYERLLLGQPNSSQLW 1501

Query: 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1738
            I YMAF + ++D+  AR +AERA++TINI+EE EKLN+W+AY NLE  YGN  EE V +V
Sbjct: 1502 IAYMAFQMQVSDLAAARQVAERAIKTINIKEEIEKLNVWIAYLNLEVAYGN--EETVDEV 1559

Query: 1739 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRRVQRL--LK 1795
            F+RA  Y D ++VH  L  +Y ++ + K AD+L  K++K+F + S +VW+     L    
Sbjct: 1560 FKRACTYNDKQEVHERLASIYIQSGKRKQADDLFEKIVKEFGYKSPEVWVNYAHFLHTTA 1619

Query: 1796 QQQEGVQAVVQRA--LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKR 1851
               +  +A+++RA  +L    H ++  + + A LEF+  NG  ++GR++FE +L+ YPK+
Sbjct: 1620 HSPDRARALLKRATQVLGKETHMYLALLPKFAALEFRSPNGDKEQGRTLFENLLATYPKK 1679

Query: 1852 TDLWSIYLDQEIRLGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERI 1908
             DLW+  +D E    D D  +IR LF+R   +  L P++ K  F+++ ++E+  G+++  
Sbjct: 1680 FDLWNQLIDLETSAADADKGVIRDLFDRGSKVKGLKPRQAKAWFRRWAQWEEKNGDKKSR 1739

Query: 1909 EYVKQKAMEYVES 1921
            E V  KA E+  +
Sbjct: 1740 ERVSAKAQEWART 1752



 Score =  206 bits (525), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 231/876 (26%), Positives = 383/876 (43%), Gaps = 81/876 (9%)

Query: 7   KSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRE 66
           KS    SK G K  K        S K    A  A   +    ++ P+FPRGG   LT  E
Sbjct: 32  KSNDAGSKAGAKTGKQGNKPAPKSDKPAPPAPTAPAKSTLLKEEEPMFPRGGASVLTPLE 91

Query: 67  RDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYAN 124
             +I   A+ DA FE          ++  K T +KA E             S   P   +
Sbjct: 92  YKQIQVQAKNDALFE----------EQSSKATAKKAGEKEGKQKKSKKRSKSDDTPAKPD 141

Query: 125 -------KITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------------RAA 164
                   +  K +  G  + G V  +N  D+ + LP  + G                A+
Sbjct: 142 ADAVKVESLNFKRLVKGSLVLGSVCAINSLDIAVALPNNIIGHVPITAISAPLTKRLEAS 201

Query: 165 DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKE----IGKRKIWLSLRLSL 220
              D   ++E E + D  L ++F +GQ V   V+   D+         KR I LSL+ SL
Sbjct: 202 AGNDDAEESEDENDNDVDLESLFQIGQYVRAYVVSTVDEASTHTPGKAKRHIELSLQPSL 261

Query: 221 LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPG 277
              G++ + V     + A + S+EDHGY++   +      GFL R  + ++   + ++PG
Sbjct: 262 ANTGMAEQDVVVNSTVMAAIASVEDHGYVMDIEIADSKLQGFLARKQVDKSIPQEALQPG 321

Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
            +L  +V + +   KVV LS+  +T+           +ID  +PG      V  +  +G+
Sbjct: 322 AVLLCIV-TKNAKGKVVQLSTLGETMGNVENVPSTATTIDTFLPGTAADVLVSEVSSHGI 380

Query: 338 MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH 397
           +   +     T D+ H        + ++ Y    ++ AR++   PT++      +P L  
Sbjct: 381 VGKIMGSLDVTADLVHSGAGPDGIDLEDTYKVGSRLKARVICNFPTAK------HPKLGI 434

Query: 398 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---E 454
           +  P S      I ++  V +V+  +GL +D+    VS   +V IS V + +V  L    
Sbjct: 435 SALPHST-----IVEKCTVKQVEPEIGLYVDVGVEGVS--GFVHISRVKDGKVDALFENS 487

Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSF 512
             YK GS    R++G+   +G+    L+ S  E       D+  G VV G V  + V++ 
Sbjct: 488 GPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFLRIEDIPVGAVVSGVVEKMVVNAA 547

Query: 513 GA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKK 567
           G    IV+   G+  L P  H ++  +  P KKF+ G ++  RVL     S++I +T KK
Sbjct: 548 GVGGLIVKIADGISGLVPEMHFADVHLQNPEKKFREGLKVKARVLSTDAASRQIRLTLKK 607

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
           TLV S L  + SY +        G I  + +HG  V+FY  ++GF P SE+      +P 
Sbjct: 608 TLVNSDLPAIQSYEQIAVGQQALGTIINVLQHGAIVQFYGRLRGFLPVSEMSEAYIQDPK 667

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPN 683
             + VGQ V   ++S  P + ++ +S         E  L    +++G +VS  V   T +
Sbjct: 668 EHFRVGQTVSIYVISFDPDAAKLIVSCKDPSAFGLEKQLALKKLQIGDVVSAKVTQKTDD 727

Query: 684 AVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVLD-NES-SNLL 738
            V V  +A    K  +P  HL D  +  +  +S +K         +L++L+ NE+  +++
Sbjct: 728 DVFVE-LADSSLKAILPVAHLTD--KSVSKTQSALKKIHVNQTLAELVILEKNEARRSII 784

Query: 739 LSAKYSLINSAQQ----LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
           LS K SL+ ++++       D + +     V GYV NI  T  FV+F G+LT   P+S  
Sbjct: 785 LSQKPSLVKASKEGKFLTTLDGARV--GDEVSGYVRNITATAVFVQFGGKLTALLPKSMI 842

Query: 795 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
              ++       +  QSV   I  VN+E  R+ +++
Sbjct: 843 PREEQDKPDFGMFKSQSVTVKITSVNTELNRLVVAI 878



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 4/163 (2%)

Query: 499  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
            G +++G V  V   G  V   G V A   + ++S+  +    ++F+V   +  R++ V +
Sbjct: 1201 GDIIRGFVKNVSDKGLFVTLGGNVTAFVQIKNLSDAYLKYWKEQFQVDQLVKGRIISVAN 1260

Query: 559  KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGVQGFAPRS 616
             RI ++ K ++V      L++ ++  +     G + K+E+ G F+       + G   RS
Sbjct: 1261 GRIEMSLKPSVVDKDYVPLTTISDLKEGQTITGRVRKVEEFGAFIDIDGSANLSGLCHRS 1320

Query: 617  ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            E+      +   +Y  G  VK +++     ++RINLS  +KP+
Sbjct: 1321 EMSDKTVKDARKLYEEGDKVKAKVLKVDVTAKRINLS--LKPS 1361


>gi|367027696|ref|XP_003663132.1| hypothetical protein MYCTH_2304622 [Myceliophthora thermophila ATCC
            42464]
 gi|347010401|gb|AEO57887.1| hypothetical protein MYCTH_2304622 [Myceliophthora thermophila ATCC
            42464]
          Length = 1818

 Score =  395 bits (1015), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 402/1519 (26%), Positives = 708/1519 (46%), Gaps = 192/1519 (12%)

Query: 488  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG----VKALCPLPHMSEFEIVKPGKKF 543
            G V  H DV   +V  G     D    + Q+  G     + +C  P+          K  
Sbjct: 381  GKVMGHLDVTADLVHSGA--GPDGVDIVNQYKVGSRLKARIICTFPN---------AKLP 429

Query: 544  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 603
            K+G  L+  V+ +K K      ++ L  + LA  +   E T R +  G        G +V
Sbjct: 430  KLGISLLPHVVSLKPKIANKDGQELLPTAILAHSAIVNECTVRKVEPGI-------GLYV 482

Query: 604  RF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF----M 655
                 GV GF   S +    +D   E S  Y VG V   R++          LSF    +
Sbjct: 483  DVGVEGVPGFVHISRVKDGKVDTLFENSGPYKVGSVHPGRVVGYNNFDGMFLLSFEKKVL 542

Query: 656  MKPTRVSEDDLVKLGSLVSGVVDVVTPN----AVVVYVIAKGYSKGTIPTEHLAD-HLEH 710
             +P    ED  + +G++V GVV+ +  N      ++  IA+G S G +P  HLAD HL+H
Sbjct: 543  EQPFLRIED--IPIGAVVPGVVEKLVINQDGLGGLIVNIAQGIS-GLVPEMHLADVHLQH 599

Query: 711  ATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
                +   + G +    ++  N + + L L+ K +L+NS          +       G +
Sbjct: 600  P---EKKFREGMKVKARVLSTNPAMHQLRLTLKKTLVNSEAPAIKSYDELAVGLQAPGTI 656

Query: 770  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             N+++ G  V+F G+L GF P S+  +   +D  + + VGQ+V   +L  + ET R+ +S
Sbjct: 657  VNVLQHGAIVQFYGQLRGFLPVSEMSEAYISDPKEHFRVGQTVSIYVLSFDPETRRLIVS 716

Query: 830  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
             K               F LE+++A+ +                IG ++  KV +  +  
Sbjct: 717  CKDPSA-----------FGLEKQLALKK--------------LQIGDLVSAKVTQKTEDD 751

Query: 890  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLK 939
            V V   + S        H    +  ++ S ++            +L+  +A R + LS K
Sbjct: 752  VFVELTDSSLKAILPVGHLTDKSVSKTQSALKKIHVNQTLSDLVVLEKNEARRSIILSHK 811

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
               +          QA K+ +   +  D  +  TV   V  +      +       ++  
Sbjct: 812  PSLV----------QASKEGKLLRSVDDARLGDTVAGFVRNITATAAFVQFAGNLTALLP 861

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET-SSSKRAKKK 1058
             +    + Q          QS+   + ++      GRLL+ + ++S+ E   SSK A + 
Sbjct: 862  KTKLPKDAQDKLNFGLFKSQSLAVKITSI--DRDLGRLLVAIPSVSDEEARKSSKPADRA 919

Query: 1059 --------SSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
                    SS D   +G + +A +  +K  +L ++      GRI ++++ D   ++ ++ 
Sbjct: 920  VNALDDSVSSMDDLKIGKITKARVKSVKETQLNVQIADNVQGRIDVSQIFDKWEDIPDSR 979

Query: 1108 --FSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFE 1157
                 FK    + AR++    A++++  P   +S   + ELS KPS L    +   L  +
Sbjct: 980  RPLKRFKQNDILEARVLGIHDARNHRFLPITHRSSHSVLELSAKPSDLKPDTLPEPLSLD 1039

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
            +  +  G     +V  V + +  + +S +++ ++  ++++ + S+L   ++ F +G A+ 
Sbjct: 1040 K--IEPGSSYIAFVNNVASSYLWVNLSPNVRGRISAMEASDDLSKLANLEKSFPVGSALQ 1097

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              VLS++KEK+ + L  R        +   +S D +Q    +G ++  +++KI      +
Sbjct: 1098 VRVLSVDKEKQRVDLSAR-----APGEAAQLSWDKIQ----QGLVLPAKVTKI--NDRQV 1146

Query: 1278 VVQIGPHLYGRVHFTELKN-ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            VV++   + G VH  +L +    ++PLS + + + V+  V+E+ ++ +    + LS+R S
Sbjct: 1147 VVKLSELVAGPVHLADLADDYDEANPLS-HSKNEIVRVAVVEVDKSNK---RLRLSMRPS 1202

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
                       L++ +    K + K   L    I++G+VKNV+ KG F+ L   + A V 
Sbjct: 1203 ---------RVLNSSLPVKDKEITKSTKLEVGDIIRGFVKNVSDKGLFVSLGGDVVAHVK 1253

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1456
            + NLSD Y++  ++ F + +LV GR++SV     R+E+ LK S         I  +++L 
Sbjct: 1254 IKNLSDAYLKDWKEHFQVDQLVKGRIISVA--DGRIEMDLKPSVVEQDYVPPIT-IADLR 1310

Query: 1457 VGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
             G IV G++++VE +G F+ I+ + NL GLCH SE+++ +V +  T+Y  G++VK ++LK
Sbjct: 1311 EGQIVTGKVRKVEEFGAFVDIDGSMNLSGLCHRSEMADRNVKDARTLYNEGDRVKARVLK 1370

Query: 1516 VDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM 1575
            VD EK+R++LG+K SYFK+D  +      EE D      G        E+S       D 
Sbjct: 1371 VDLEKKRVNLGLKPSYFKDDEVDDMDVDSEEEDAGAALNGE-------EDSG------DE 1417

Query: 1576 ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTD-EAKTIDEKNNRHAK 1634
            E  D G  +L            E + D+ + D++ G +  +G T  EA   D   +    
Sbjct: 1418 EMSDAGGAILVGGSDDDDDEEDEEDDDEGKSDVEMGEAPEEGLTGLEAGGFDWTADALDA 1477

Query: 1635 -------------KKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKY 1681
                         KK K+ RE +    +   L+ + P+T  ++ERL+   P+SS +WI Y
Sbjct: 1478 DEDAKAGPADEPIKKTKKRREPQGIVDKTAELDINGPQTSSDYERLLLGQPDSSELWIAY 1537

Query: 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741
            MA  + + D+  AR +AERAL+TINI+EE EKLN+W+AY NLE  YG   EE V +VF+R
Sbjct: 1538 MASQMQINDLASARQVAERALKTINIKEETEKLNVWIAYLNLEVAYGT--EETVEEVFKR 1595

Query: 1742 ALQYCDPKKVHLALLGLYERTEQNKLADELL-YKMIKKF-KHSCKVWLRRVQRLLKQ--Q 1797
            A  Y D +++H  L  +Y ++ ++K A+ L   +++KK+   S  VW+     L  +  Q
Sbjct: 1596 ACTYNDDQEIHERLASIYIQSGKHKEAERLFEERILKKYGSRSPHVWINYAHFLHTKANQ 1655

Query: 1798 QEGVQAVVQRALLSL---------PRHKHIKFISQTAILEFKNGVADR--GRSMFEGILS 1846
             E  +A+ +RA   L         P   ++  + + A LEF++   DR  GR++FE +L+
Sbjct: 1656 PERARALCKRATQILCNPANVHTNPSQVYLTLLPKFAALEFRSPSGDREQGRTLFEQLLA 1715

Query: 1847 EYPKRTDLWSIYLDQEIR-----LGDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEK 1900
             YP++ DLW+   D E       + DV ++R LFER   +  L P++ K  F+++ ++E+
Sbjct: 1716 TYPRKFDLWNQLADLETSSFRDGVDDVGVVRDLFERGSKVKGLKPRQAKAWFRRWAKWEE 1775

Query: 1901 SVGEEERIEYVKQKAMEYV 1919
              G+ +  E V  KA E+ 
Sbjct: 1776 EKGDAKSRERVSAKAQEWA 1794



 Score =  241 bits (615), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 346/1446 (23%), Positives = 600/1446 (41%), Gaps = 222/1446 (15%)

Query: 8    SQKKSSKDGPKFNKASKNQFKNSKKQIND----AVEAQDLALPPDDDV--------PVFP 55
            S  KS++  P+   + + +   S K  +D    A E++  A PP   V        P+FP
Sbjct: 14   SASKSNRAAPESRPSKRAKASESAKAKDDSNKGAKESKPPAKPPATTVISKPKEEEPLFP 73

Query: 56   RGGGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
            RGGG  LT  E+ +I   A  D  FE            KKK+ + + + TV        D
Sbjct: 74   RGGGSVLTPLEQKQISIQARKDVLFEEQSESKKGDKAAKKKRRKSQVDATV---AKATKD 130

Query: 114  GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPI 170
              + K+      +  K +  G  + G V  +N  D+ + LP  L G   +   +++L   
Sbjct: 131  EDAVKV----ESLNFKRLVKGSLVLGTVCAINPLDIAVALPNNLVGHVPITSISESLTQR 186

Query: 171  LDNEI----------------------EANEDNLLPTIFHVGQLVSCIVLQ-LDDDKKEI 207
            L                             +D  L  +F++GQ V   V   LD+     
Sbjct: 187  LQESAEKEEAEEEEEEEEEEEGGGSGERGADDVDLNGLFYIGQYVRAYVTSTLDESTPGK 246

Query: 208  GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNN 265
             KR I LSL  +    G+S + + E   L A V SIEDHG++++ G+      GFLPR  
Sbjct: 247  SKRHIGLSLEPAHANTGMSEQDLVENSTLMASVASIEDHGFVMNIGIADSDVKGFLPRKQ 306

Query: 266  LAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMM 324
            L ++    +++PG +L  +V     + KVV LS+  D +        +  +I   +PG  
Sbjct: 307  LDKSIPPENLQPGSVLLCIVTGRAASGKVVQLSTLSDRLGNPKHNPAEATTIGSFLPGAA 366

Query: 325  VSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 384
                V  + ++GV+   + +   T D+ H        +  N Y    ++ ARI+   P +
Sbjct: 367  ADVLVSEVSQHGVIGKVMGHLDVTADLVHSGAGPDGVDIVNQYKVGSRLKARIICTFPNA 426

Query: 385  R--AVGLTLNPYLLHNRA-----------PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            +   +G++L P+++  +            P + +    I ++  V +V+ G+GL +D+  
Sbjct: 427  KLPKLGISLLPHVVSLKPKIANKDGQELLPTAILAHSAIVNECTVRKVEPGIGLYVDVGV 486

Query: 432  TPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
              V  P +V IS V + +V  L      YK GS    R++G+ + +G+     +    E 
Sbjct: 487  EGV--PGFVHISRVKDGKVDTLFENSGPYKVGSVHPGRVVGYNNFDGMFLLSFEKKVLEQ 544

Query: 489  LVFTHSDVKPGMVVKGKV----IAVDSFGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
                  D+  G VV G V    I  D  G  IV    G+  L P  H+++  +  P KKF
Sbjct: 545  PFLRIEDIPIGAVVPGVVEKLVINQDGLGGLIVNIAQGISGLVPEMHLADVHLQHPEKKF 604

Query: 544  KVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
            + G ++  RVL       ++ +T KKTLV S+   + SY E    L   G I  + +HG 
Sbjct: 605  REGMKVKARVLSTNPAMHQLRLTLKKTLVNSEAPAIKSYDELAVGLQAPGTIVNVLQHGA 664

Query: 602  FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
             V+FY  ++GF P SE+      +P   + VGQ V   ++S  P +RR+ +S        
Sbjct: 665  IVQFYGQLRGFLPVSEMSEAYISDPKEHFRVGQTVSIYVLSFDPETRRLIVSCKDPSAFG 724

Query: 662  SEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 717
             E  L    +++G LVS  V   T + V V +      K  +P  HL D  +  +  +S 
Sbjct: 725  LEKQLALKKLQIGDLVSAKVTQKTEDDVFVELTDSSL-KAILPVGHLTD--KSVSKTQSA 781

Query: 718  IKP---GYEFDQLLVLD-NES-SNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVC 770
            +K          L+VL+ NE+  +++LS K SL+ ++++  L            V G+V 
Sbjct: 782  LKKIHVNQTLSDLVVLEKNEARRSIILSHKPSLVQASKEGKLLRSVDDARLGDTVAGFVR 841

Query: 771  NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            NI  T  FV+F G LT   P++K     +  L+   +  QS+   I  ++ + GR+ +++
Sbjct: 842  NITATAAFVQFAGNLTALLPKTKLPKDAQDKLNFGLFKSQSLAVKITSIDRDLGRLLVAI 901

Query: 831  KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 890
                 S +D    +     +  +  L  S  +  +LK      IG + + +V    +  +
Sbjct: 902  P----SVSDEEARKSSKPADRAVNALDDSVSSMDDLK------IGKITKARVKSVKETQL 951

Query: 891  VVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
             V   +  +V G I   Q+                                  D++ +  
Sbjct: 952  NVQIAD--NVQGRIDVSQI---------------------------------FDKWEDIP 976

Query: 951  SNRQAQKKKRKRE--ASKDLGVHQTVN-AIVEIV-KENYLVLSLPEYNHSIGYASVSDYN 1006
             +R+  K+ ++ +   ++ LG+H   N   + I  + ++ VL L         A  SD  
Sbjct: 977  DSRRPLKRFKQNDILEARVLGIHDARNHRFLPITHRSSHSVLEL--------SAKPSDLK 1028

Query: 1007 TQKFPQKQFLN----GQSVIATVMALPSSSTAGRLLLLLKA-ISETETSS--SKRAKKKS 1059
                P+   L+    G S IA V  + SS     L   ++  IS  E S   SK A  + 
Sbjct: 1029 PDTLPEPLSLDKIEPGSSYIAFVNNVASSYLWVNLSPNVRGRISAMEASDDLSKLANLEK 1088

Query: 1060 SYDVGSLVQAEI--------------------------------------TEIKPLELRL 1081
            S+ VGS +Q  +                                      T+I   ++ +
Sbjct: 1089 SFPVGSALQVRVLSVDKEKQRVDLSARAPGEAAQLSWDKIQQGLVLPAKVTKINDRQVVV 1148

Query: 1082 KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI-IAKSNKPDMKKSFLWELSI 1140
            K      G +H+ ++ DD      N  S+ K      A + + KSNK          LS+
Sbjct: 1149 KLSELVAGPVHLADLADDYDEA--NPLSHSKNEIVRVAVVEVDKSNK-------RLRLSM 1199

Query: 1141 KPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI--LDS 1196
            +PS +  S   +  K + +   + +G  + G+V  V ++   +++   + A + I  L  
Sbjct: 1200 RPSRVLNSSLPVKDKEITKSTKLEVGDIIRGFVKNVSDKGLFVSLGGDVVAHVKIKNLSD 1259

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF---QDGISDKTVDISNDNM 1253
            AY    L++++  F + + V G ++S+   +  + + L+P    QD +   T+       
Sbjct: 1260 AY----LKDWKEHFQVDQLVKGRIISVADGR--IEMDLKPSVVEQDYVPPITI------- 1306

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
               + EG IV G++ K+      + +    +L G  H +E+ +  V D  + Y+EG  VK
Sbjct: 1307 -ADLREGQIVTGKVRKVEEFGAFVDIDGSMNLSGLCHRSEMADRNVKDARTLYNEGDRVK 1365

Query: 1314 CKVLEI 1319
             +VL++
Sbjct: 1366 ARVLKV 1371



 Score = 65.9 bits (159), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 180/867 (20%), Positives = 325/867 (37%), Gaps = 179/867 (20%)

Query: 131  ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVG 190
            ++ G++  G +  V +   ++   G LRG    ++  +  + +  E          F VG
Sbjct: 646  LAVGLQAPGTIVNVLQHGAIVQFYGQLRGFLPVSEMSEAYISDPKEH---------FRVG 696

Query: 191  QLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLY---KGLSLETVQEGMVLTAYVKSIEDHG 247
            Q VS  VL  D +      R++ +S +    +   K L+L+ +Q G +++A V    +  
Sbjct: 697  QTVSIYVLSFDPET-----RRLIVSCKDPSAFGLEKQLALKKLQIGDLVSAKVTQKTEDD 751

Query: 248  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVYLSSD 299
              +     S    LP  +L + S    +  L        L   VV   +  R+ + LS  
Sbjct: 752  VFVELTDSSLKAILPVGHLTDKSVSKTQSALKKIHVNQTLSDLVVLEKNEARRSIILSHK 811

Query: 300  PDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
            P  V    +K+ K + S+D    G  V+  V++I      + F    T            
Sbjct: 812  PSLVQ--ASKEGKLLRSVDDARLGDTVAGFVRNITATAAFVQFAGNLTAL---------L 860

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR 418
            P T    D     K+N  +      S+++ +                         K+  
Sbjct: 861  PKTKLPKD--AQDKLNFGLF----KSQSLAV-------------------------KITS 889

Query: 419  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 478
            +DR LG LL            V I  V++EE RK  K                       
Sbjct: 890  IDRDLGRLL------------VAIPSVSDEEARKSSKPADRA------------------ 919

Query: 479  GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIV 537
                 +A +  V +  D+K G + K +V +V      VQ    V+    +  +  ++E +
Sbjct: 920  ----VNALDDSVSSMDDLKIGKITKARVKSVKETQLNVQIADNVQGRIDVSQIFDKWEDI 975

Query: 538  ----KPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLIT 589
                +P K+FK    L  RVLG+   R    + +TH+ +    +L+   S  +  D L  
Sbjct: 976  PDSRRPLKRFKQNDILEARVLGIHDARNHRFLPITHRSSHSVLELSAKPSDLKP-DTLPE 1034

Query: 590  HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---------------YHVGQ 634
               + KIE    ++ F N V        L  +     S+M               + VG 
Sbjct: 1035 PLSLDKIEPGSSYIAFVNNVASSYLWVNLSPNVRGRISAMEASDDLSKLANLEKSFPVGS 1094

Query: 635  VVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
             ++ R++S     +R++LS    P   ++   D ++ G ++   V  +    VVV +   
Sbjct: 1095 ALQVRVLSVDKEKQRVDLS-ARAPGEAAQLSWDKIQQGLVLPAKVTKINDRQVVVKL--- 1150

Query: 693  GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS-LINSA 749
              S+      HLAD  +       +     E  ++ V++ + SN  L LS + S ++NS+
Sbjct: 1151 --SELVAGPVHLADLADDYDEANPLSHSKNEIVRVAVVEVDKSNKRLRLSMRPSRVLNSS 1208

Query: 750  QQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
              LP      + ++ +    ++ G+V N+ + G FV   G +          D    D  
Sbjct: 1209 --LPVKDKEITKSTKLEVGDIIRGFVKNVSDKGLFVSLGGDVVAHVKIKNLSDAYLKDWK 1266

Query: 804  KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
            + + V Q V+  I+ V    GRI + LK S         +++ ++    IA L+      
Sbjct: 1267 EHFQVDQLVKGRIISVAD--GRIEMDLKPSV--------VEQDYVPPITIADLRE----- 1311

Query: 864  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES------- 916
                       G ++ GKV +  +FG  V  +   ++ G     ++A   V+        
Sbjct: 1312 -----------GQIVTGKVRKVEEFGAFVDIDGSMNLSGLCHRSEMADRNVKDARTLYNE 1360

Query: 917  GSVIQAAILDVAKAERLVDLSLKTVFI 943
            G  ++A +L V   ++ V+L LK  + 
Sbjct: 1361 GDRVKARVLKVDLEKKRVNLGLKPSYF 1387



 Score = 49.3 bits (116), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 171/379 (45%), Gaps = 40/379 (10%)

Query: 216  LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL----PRNNLAENSG 271
            L+   L + LSL+ ++ G    A+V ++    Y+     P+  G +      ++L++ + 
Sbjct: 1027 LKPDTLPEPLSLDKIEPGSSYIAFVNNVAS-SYLWVNLSPNVRGRISAMEASDDLSKLAN 1085

Query: 272  ID--VKPGLLLQGVVRSIDRTRKVVYLSS-DPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328
            ++     G  LQ  V S+D+ ++ V LS+  P   ++        +S D +  G+++  +
Sbjct: 1086 LEKSFPVGSALQVRVLSVDKEKQRVDLSARAPGEAAQ--------LSWDKIQQGLVLPAK 1137

Query: 329  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
            V  I +  V++       G V +  L + +   N  + +++++ V   ++ VD +++ + 
Sbjct: 1138 VTKINDRQVVVKLSELVAGPVHLADLADDYDEANPLS-HSKNEIVRVAVVEVDKSNKRLR 1196

Query: 389  LTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
            L++ P  + N + P         + ++VGDI      V+     GL + +    V   A+
Sbjct: 1197 LSMRPSRVLNSSLPVKDKEITKSTKLEVGDII--RGFVKNVSDKGLFVSLGGDVV---AH 1251

Query: 440  VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDV 496
            V I ++++  ++  ++ ++    V+ RI+     +G     LK S  E       T +D+
Sbjct: 1252 VKIKNLSDAYLKDWKEHFQVDQLVKGRIISV--ADGRIEMDLKPSVVEQDYVPPITIADL 1309

Query: 497  KPGMVVKGKVIAVDSFGAIVQFPGGVK--ALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            + G +V GKV  V+ FGA V   G +    LC    M++  +      +  G  +  RVL
Sbjct: 1310 REGQIVTGKVRKVEEFGAFVDIDGSMNLSGLCHRSEMADRNVKDARTLYNEGDRVKARVL 1369

Query: 555  GV--KSKRITVTHKKTLVK 571
             V  + KR+ +  K +  K
Sbjct: 1370 KVDLEKKRVNLGLKPSYFK 1388


>gi|254570329|ref|XP_002492274.1| RNA binding protein with preference for single stranded tracts of U's
            involved in synthesis of both [Komagataella pastoris
            GS115]
 gi|238032072|emb|CAY69994.1| RNA binding protein with preference for single stranded tracts of U's
            involved in synthesis of both [Komagataella pastoris
            GS115]
 gi|328353721|emb|CCA40119.1| Polyribonucleotide nucleotidyltransferase [Komagataella pastoris CBS
            7435]
          Length = 1694

 Score =  395 bits (1014), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 393/1489 (26%), Positives = 704/1489 (47%), Gaps = 186/1489 (12%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            V PG++V   ++ +   G   +  G +    PL H+  F + +  + +K+G+ +  RV+G
Sbjct: 324  VLPGVMVNAHILDITEEGIFCRVLGLLPGRIPLAHLKLFNVPEIRETYKIGSTIKSRVVG 383

Query: 556  VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW------ITKIEKHGCFVRFYNGV 609
            V     + +   + + S L + S+Y E+       G+      I   + +  ++      
Sbjct: 384  VLEYEGSKSLTLSTIPSILELDSTYDESPLESFPFGFTFESVKIVGKDSNNVYLELNEDT 443

Query: 610  QGFAPRSELGLDPGCEPSSMYHVGQVV-KCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 666
             G    S+L  +   +  S Y VG    K R++   P  +   L+  M P ++    L  
Sbjct: 444  YGQVHLSKLNKEVSID--SFYKVGSTHHKARVIGYSPVDKVFVLT--MDPRQLEAKFLNI 499

Query: 667  --VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
              + +G +V+GVV  V  + + + +  +   +  +P  H++D +     MK   K G + 
Sbjct: 500  QDIPIGEIVTGVVTKVHSHGLNIKIFDQ--FEAQVPYGHMSDVMLTYPEMK--FKIGTKV 555

Query: 725  DQLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
             +  VL     NL ++ K SL+ S + +L      + PN      V     TG  + F  
Sbjct: 556  -KGRVLKFYRGNLCVTLKKSLLRSERDELIFTYEDVVPNKRTFATVEKFFPTGVLMSFFN 614

Query: 784  RLTGFAPRSKAVDG--QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             ++GF P+++  +    R +     +   SVR + +D  +   R+      SC  S D S
Sbjct: 615  NISGFLPKTEISEAYVNRPEDHLKLFQTISVRIDSIDPATNKFRV------SCLLSKDLS 668

Query: 842  FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS-VIEGKVHESNDFGVVVSFEEHSDV 900
              QE                     K +  FI GS ++E  + E     ++V  ++ S+V
Sbjct: 669  EEQE---------------------KKISTFIPGSSILEVYIVEKMKDAMIVEVKD-SNV 706

Query: 901  YGFITHHQLA-GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR--------FREANS 951
             G I   QL+ G   ++ ++++ A+         V  SL+ +F+ R        F   +S
Sbjct: 707  RGVIQEGQLSDGDQNQNKTLLRTAV---------VGSSLEALFLHRDPKSRTINFTAKDS 757

Query: 952  NRQAQKKKRKREASKDL-GVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYA---SVSDYN 1006
              +A K  +   + ++L  V + V   V  +    L +   E+   + G+A    ++D  
Sbjct: 758  LIRASKSGQLPASFEELPAVGEIVYGYVHTITNAGLFI---EFADGLSGFARTKDITDEP 814

Query: 1007 TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLL--LLKAISETETSSSKRAKKKSSYDVG 1064
            + K P   F N QSV A ++ L       RL L  +   I        K     + +  G
Sbjct: 815  SDKLPSLYFKN-QSVRARILKLDDEFRKFRLTLKDIDHQIVAATNPVDKSITNLNEFVPG 873

Query: 1065 SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARII 1122
             + +A+I  + P +L ++      GRI +++V D    +   +   S+FK G  +  ++I
Sbjct: 874  KITKAKIKSVTPTQLTVELAENQLGRIDVSQVFDSLLEIKDTKKPLSSFKEGAELKVKVI 933

Query: 1123 AKSNKPDMKKS--------FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1174
               NK     S         L ELSIK S L   E G   +     ++ G +  G+V + 
Sbjct: 934  GYQNKDSSFTSVAFRDWGDILVELSIKKSEL--EEEGKVNVLSLTQITPGTKWLGFVTRY 991

Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
               +  +++S   + +L ++D +   S ++E ++ + +G A+      I           
Sbjct: 992  ARGFWWVSVSPKFRTKLSLMDLSKSGS-VEELEKAYPLGSAIEVTAKQI----------- 1039

Query: 1235 RPFQDGISDKTVDI-SNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
                  I +K V++ S +N    I++   GD +  RI  +      + V++   +  +  
Sbjct: 1040 ------IGNKAVEVFSKENRIETINDVKVGDKLPCRIISLSHDY--VTVELSDKVKAKSF 1091

Query: 1291 FTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1350
             TE  +       S +         VL +  T R  F   +SLRS        N+ D   
Sbjct: 1092 ITEALDDYSESLESTFSTNDICTATVLSVDDTTRQIF---VSLRSE-------NAKD--- 1138

Query: 1351 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1410
                  K +E  ED+    IV+G++  +++ G ++ L R + A V ++++SD ++   +K
Sbjct: 1139 ------KLIESFEDVKRGDIVRGFITRISNFGVYVSLGRTVFALVRVTDISDLFLTDWKK 1192

Query: 1411 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1470
               + + V G+++      +R+ +TLK S     + + ++   +L VGD+  G IK++  
Sbjct: 1193 HVKLNQFVTGKIVDAGE-ERRILMTLKESQVGQGTGA-LHQFDDLKVGDVYEGTIKKIMD 1250

Query: 1471 YGLFITIENTNLV-GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            +G+FIT++  + V GLCH S++S+  ++N E+++  G++VKVKIL +++ K+++SLGMK+
Sbjct: 1251 FGVFITLDGVHSVDGLCHRSQISDSKIENFESLFNQGDRVKVKILDINRNKKQLSLGMKA 1310

Query: 1530 SYFKNDADNLQMSSEEESD----EAIEEVGSYNRSSLLEN-SSVAVQDMDMESEDGGSLV 1584
            SYF N  D      EEE+D    E  + V S +   ++EN      QD D E +      
Sbjct: 1311 SYFANRDD------EEEADQLRAETDDSVDSDSDDQMMENIFETRQQDSDDEPD------ 1358

Query: 1585 LAQIESRASVPPLEVNLDDEQPD-MDNGISQNQGHTDEAKTIDE---------KNNRHAK 1634
                          V++D E P  + +G+S N G    A  +D+               K
Sbjct: 1359 --------------VDIDTESPKKIASGLSTN-GFDWTASILDQAEDDESSSSDEEDFTK 1403

Query: 1635 KKEKEEREQEIRAAEER--LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVE 1692
            KK+K+ R+ +   AE++   L    P++  +FERL+  +P+SS +W+ YM+F L ++++E
Sbjct: 1404 KKDKKNRKTKASIAEDKSATLNTRTPQSVSDFERLLIGNPDSSILWMNYMSFQLQLSEIE 1463

Query: 1693 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVH 1752
            KAR IAERAL+ IN REE EK+NIW+A  NLEN +G   ++ + +VF+RA QY D   +H
Sbjct: 1464 KAREIAERALKIINYREEQEKMNIWIALLNLENTFGT--DDTLEEVFKRACQYMDSYVMH 1521

Query: 1753 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811
              L+G++  +E+ +  +E+   M KKF  +   W+     LL++   +  + V+ RAL  
Sbjct: 1522 QKLVGIFALSEKWEKCEEIYTVMTKKFGRNVTTWVSYGAFLLERGNPDEARQVLGRALKV 1581

Query: 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1871
            LP+  HI+ + + A LEF +G A++GRS+FEG+L++ PKR DLW++Y+DQEI++ +   +
Sbjct: 1582 LPKADHIEVVRKFAQLEFAHGDAEQGRSLFEGLLADVPKRIDLWNVYIDQEIKINEKKKV 1641

Query: 1872 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
              LFER I+  L  K+ +F F K+LE+E+   + +  +YVK +A +YV+
Sbjct: 1642 EDLFERVITKKLTRKQARFFFGKWLEFEEKQKDVKAADYVKAQASDYVQ 1690



 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 220/832 (26%), Positives = 379/832 (45%), Gaps = 73/832 (8%)

Query: 53  VFPRGGGHSLTQRERDEIHAEVDAE--FE---AVERGLHKKNKKKKKKTERKA--NETVD 105
           VFPRGGG  LT  ER EI   V A+  FE   A E      +  KK+KT      N    
Sbjct: 36  VFPRGGGSVLTPLERKEISNRVTADVLFEKETAKESSFKSTDATKKRKTTATTVINPAPT 95

Query: 106 DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG------ 159
             G+++              +TLKN+  G  + G V  + +  + + LPG +RG      
Sbjct: 96  VSGTIYDQKDDSNTT--TTSMTLKNLIPGSVVLGQVISIQKLGMQLGLPGNIRGYVPITS 153

Query: 160 ----LARAADALDPILDNEIEANEDNL-------LPTIFHVGQLVSCIVLQLDDDKKEIG 208
               + +  +AL+   D+E  ++   L       L  IF +GQ +  +VL+      E  
Sbjct: 154 VSKQITQQLEALEQDSDDEDASSSPQLSEKVFPELSKIFQLGQWLRAVVLEESSVPSE-H 212

Query: 209 KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE 268
           K KI LS+    +   L  + +  G VL   V S++DHG I+  G     GF+   +  +
Sbjct: 213 KHKIQLSVEPEKVNAHLEDDDLVPGGVLQVAVNSVQDHGCIVDTG-KKIPGFIFSKSF-K 270

Query: 269 NSGIDV----KPGL-LLQGVVRSIDRTRKVVYLSS--DPDTVSKCVTKDLKGISIDLLVP 321
           NSGID+    KPG  LL  + +S ++    + L S  + D  S   T      S+D ++P
Sbjct: 271 NSGIDMETDLKPGFVLLATISKSNNKNTITLTLPSMNNKDNGSTLST----ATSVDAVLP 326

Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
           G+MV+  +  I E G+    L    G + + HL+  F     +  Y     + +R++ V 
Sbjct: 327 GVMVNAHILDITEEGIFCRVLGLLPGRIPLAHLK-LFNVPEIRETYKIGSTIKSRVVGVL 385

Query: 382 PTSRAVGLTLN--PYLL-----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
               +  LTL+  P +L     ++ +P      G  ++  K+V  D    + L++     
Sbjct: 386 EYEGSKSLTLSTIPSILELDSTYDESPLESFPFGFTFESVKIVGKDSN-NVYLELNE--- 441

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCV-RVRILGFRHLEGLATGILKASAFEGLVFTH 493
            T   V +S + +E    ++  YK GS   + R++G+  ++ +    +     E      
Sbjct: 442 DTYGQVHLSKLNKE--VSIDSFYKVGSTHHKARVIGYSPVDKVFVLTMDPRQLEAKFLNI 499

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            D+  G +V G V  V S G  ++     +A  P  HMS+  +  P  KFK+G ++  RV
Sbjct: 500 QDIPIGEIVTGVVTKVHSHGLNIKIFDQFEAQVPYGHMSDVMLTYPEMKFKIGTKVKGRV 559

Query: 554 LGVKSKRITVTHKKTLVKS-KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           L      + VT KK+L++S +  ++ +Y +      T   + K    G  + F+N + GF
Sbjct: 560 LKFYRGNLCVTLKKSLLRSERDELIFTYEDVVPNKRTFATVEKFFPTGVLMSFFNNISGF 619

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
            P++E+       P     + Q +  RI S  PA+ +  +S ++    +SE+   K+ + 
Sbjct: 620 LPKTEISEAYVNRPEDHLKLFQTISVRIDSIDPATNKFRVSCLLSKD-LSEEQEKKISTF 678

Query: 673 VSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEF 724
           + G  +++V       +A++V V      +G I    L+  D  ++ T++++ +  G   
Sbjct: 679 IPGSSILEVYIVEKMKDAMIVEV-KDSNVRGVIQEGQLSDGDQNQNKTLLRTAV-VGSSL 736

Query: 725 DQLLV-LDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
           + L +  D +S  +  +AK SLI +++  QLP+    +     +V+GYV  I   G F+ 
Sbjct: 737 EALFLHRDPKSRTINFTAKDSLIRASKSGQLPASFEELPAVGEIVYGYVHTITNAGLFIE 796

Query: 781 FLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           F   L+GFA R+K +  + +D L   Y+  QSVR+ IL ++ E  +  L+LK
Sbjct: 797 FADGLSGFA-RTKDITDEPSDKLPSLYFKNQSVRARILKLDDEFRKFRLTLK 847



 Score = 43.1 bits (100), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 484  SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
            +A + L+ +  DVK G +V+G +  + +FG  V     V AL  +  +S+  +    K  
Sbjct: 1135 NAKDKLIESFEDVKRGDIVRGFITRISNFGVYVSLGRTVFALVRVTDISDLFLTDWKKHV 1194

Query: 544  KVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
            K+   +  +++   + +RI +T K++ V      L  + +     +  G I KI   G F
Sbjct: 1195 KLNQFVTGKIVDAGEERRILMTLKESQVGQGTGALHQFDDLKVGDVYEGTIKKIMDFGVF 1254

Query: 603  VRF--YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
            +     + V G   RS++         S+++ G  VK +I+
Sbjct: 1255 ITLDGVHSVDGLCHRSQISDSKIENFESLFNQGDRVKVKIL 1295


>gi|410076380|ref|XP_003955772.1| hypothetical protein KAFR_0B03400 [Kazachstania africana CBS 2517]
 gi|372462355|emb|CCF56637.1| hypothetical protein KAFR_0B03400 [Kazachstania africana CBS 2517]
          Length = 1715

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 353/1220 (28%), Positives = 583/1220 (47%), Gaps = 195/1220 (15%)

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            +GC V F G + GF P ++  +       +   +GQ+V   +L V+ E  RI      SC
Sbjct: 616  SGCVVSFFGGIRGFLPNAEISEVFVKRPEEHLRLGQTVSVKLLQVDEEKARIL----TSC 671

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
              S++ S  Q+                           +I +++ GK      F  VV+ 
Sbjct: 672  KISSEQSQEQKD--------------------------VITNLVPGKT-----FIDVVAV 700

Query: 895  EEHSD----------VYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLV 934
            E+  D          + G I    L+ + +E           G+     ++D     ++ 
Sbjct: 701  EKTKDSIIVEMSKTGLRGVIYVGHLSDSRIEQNRAALKKITIGAEFNGLVIDKDVRTQVF 760

Query: 935  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV--NAIVEIVKENYLVLSLPE 992
            +L+LK   I   +      Q  + K   +A    G  +++  N +       ++ L LP 
Sbjct: 761  NLTLKKSLIKAAKNNTLPTQYSEIKSVSKAEALPGYVKSISNNGVFVAFNGKFVGLVLPS 820

Query: 993  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 1052
            Y          D +  K     F   QSV A +  L +     R LL LKA  E      
Sbjct: 821  Y-----AVDSRDIDISKI----FYVNQSVTAYL--LRTDDKNERFLLTLKAQKE------ 863

Query: 1053 KRAKKKSSYDV----------------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
            + AKK +S ++                G +V A+I  +K  +L +      HGR+ + E+
Sbjct: 864  ETAKKTTSSEIVNPIDPAIQSLNDLTTGKVVSAKIKSVKKNQLNIVIADNIHGRVDVAEI 923

Query: 1097 NDDKSNVVE--NLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSML 1145
             DD  ++ +     S FK  QTV  +II   N    K         K  + ELS+KPS+L
Sbjct: 924  FDDLKDIKDRKQPLSAFKKDQTVKVKIIGYHNIKSHKFLPITHQVSKGSVLELSMKPSLL 983

Query: 1146 TVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1203
               +  SK + E   +++G+ + GYV  +  +N W  LTIS  LKA+L + D A + +EL
Sbjct: 984  NSEDTFSKTIKE---INVGEELVGYVNNFASNNLW--LTISPVLKARLSVFDLAGDNTEL 1038

Query: 1204 QE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1262
             E  +  F +G A+   V SI+ E   +          +++K   + + N    I  G+ 
Sbjct: 1039 SENVEDSFPLGSAIPVKVTSIDSEHGFIT---------VANKYHTMKDINS---IKVGES 1086

Query: 1263 VGGRISKILSGVGGLVVQIGPHLYGRVHFTE-LKNICVSDPLSGYDE-GQFVKCKVLEIS 1320
            +  RI+KI      +++ +G  L G    T+ L +  V+   + +D+  Q V   ++ + 
Sbjct: 1087 LPARIAKIFEKY--ILLDLGNKLTGMAFATDALDDFSVTLQDAFHDKVNQIVMATIVSLD 1144

Query: 1321 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1380
               +    V LSLR+               D  TP   +   +DL    IV   VK+V+ 
Sbjct: 1145 VDSK---KVNLSLRTK--------------DAKTPT--ITSHDDLKKGDIVHALVKSVSD 1185

Query: 1381 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
            KG F+ LSR L+A V ++ LSD Y++  +K +   + V G+V+  +    R+ +TL+ S+
Sbjct: 1186 KGIFLHLSRTLEAFVPVTMLSDSYLKEWKKFYKSMQHVVGKVVKCDE-DARILITLRESE 1244

Query: 1441 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNI 1499
                    + N  ++ VGD+V G +K V  +G+F+ ++NT N+ GL H+SE+++   ++I
Sbjct: 1245 V-NGELKVLKNYDDIEVGDVVSGSVKNVTDFGVFVKLDNTVNVSGLAHISEIADKKPEDI 1303

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE-SDEAIEEVGSYN 1558
              ++  G++VK  +LK + EK+++SL +K+S F       Q+ +EEE SD+ + E     
Sbjct: 1304 SALFGPGDRVKTIVLKTNPEKKQLSLSLKASRFTT----AQVENEEEHSDDEMHE----- 1354

Query: 1559 RSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGH 1618
                          ++ ++ +  S    Q +      P   N         NG+S + G 
Sbjct: 1355 -------------QIEFDNANEESEDEEQEDESEKAKPQTTN---------NGLSLSTGF 1392

Query: 1619 TDEAKTIDEKNNRHAKKKEKEE----------REQEIRAAEERLLEKD--APRTPDEFER 1666
               A  +D+     A +  ++E          R++  R  E++ ++ +  AP +  +FER
Sbjct: 1393 DWTASILDQAQESEASEDSQDEDFTETKKHKNRKKRARITEDKTIDINTRAPESVSDFER 1452

Query: 1667 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1726
            ++  +PNSS VW+ YMAF L +++VEKAR IAERAL+TIN R+E EKLNIW+A  NLEN 
Sbjct: 1453 MIMGNPNSSIVWMNYMAFQLQLSEVEKAREIAERALKTINFRDEAEKLNIWIAMLNLENT 1512

Query: 1727 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKV 1785
            +G    + +  VF+RA QY D   +H  LL +Y+ +E+     EL     KKF      +
Sbjct: 1513 FGT--SDTLEDVFKRACQYMDSFTIHNKLLTIYQISEKYNQTSELYKSAAKKFGSEKVSI 1570

Query: 1786 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1844
            W+     L+ Q Q+E  ++++ +AL  LP+  HI+ + + A LEF  G A+RGRS+FEG+
Sbjct: 1571 WISWGDFLITQKQEEEARSILSKALKVLPKRDHIELVRKFAQLEFTKGDAERGRSLFEGL 1630

Query: 1845 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1904
            +++ PKR DLW++Y+DQEI+L +   +  L ER I   +  K+ KF F K+L++E++ G+
Sbjct: 1631 IADAPKRIDLWNVYIDQEIKLKEKKKVEELLERVILKKITKKQAKFFFNKWLQFEEAQGD 1690

Query: 1905 EERIEYVKQKAMEYVESTLA 1924
             + IEYVK KA EYVE + A
Sbjct: 1691 SKAIEYVKAKATEYVEKSKA 1710



 Score =  171 bits (434), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 201/772 (26%), Positives = 341/772 (44%), Gaps = 92/772 (11%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL----------- 171
           +  K +  G  L G V+++   D+ I    G+ G   L R +D    IL           
Sbjct: 114 LNFKTLKVGSSLLGQVSKITRGDICITCSDGISGYVNLTRISDQFTTILEDLDDDMESDD 173

Query: 172 ----DNEIEANEDNL--------LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIW 213
               D E + ++D          LP +   F +GQ + C ++    L+   K+  KR+I 
Sbjct: 174 ETKNDEEYDLSDDEEGKERKAAELPDLNDYFKLGQWLRCSIVSNSTLEPKSKQNNKRRIE 233

Query: 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID 273
            ++  +L+   +S E +Q+ M L   VKSIEDHG IL  G+   TGF+ + ++     + 
Sbjct: 234 FTIEPTLV-NAMSEEDLQKFMPLQCAVKSIEDHGAILDIGIDGMTGFITKKDVPNFDKLL 292

Query: 274 VKPGLLLQGVVRSIDRTRKV-VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
           V   + L  V +  +R+  V +  ++  + +S+         S+D +VPG +V    Q +
Sbjct: 293 V-GSVFLGNVYKKTERSVNVNLDFANKKNIISQIS-------SVDAIVPGQLVDLLCQQV 344

Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL--FVDPT-SRAVGL 389
            + G+         G +   HL   F     K+ +     V ARIL   +D    + + L
Sbjct: 345 SQYGISGKVFGLVPGFIGSSHLLK-FKEEELKHSFAIGSNVRARILASLIDGNGDKTLIL 403

Query: 390 TLNPYL------LHNRAPPSHVKVGDIYDQSKVVRVDRG-LGLLLDIPSTPVSTPAYVTI 442
           +  P++      L   +      +G I++ S V   D   L L LD             +
Sbjct: 404 STLPHIQSLETDLKEISALDAFPIGYIFENSIVKGRDSDYLYLALDEDR----------L 453

Query: 443 SDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG-MV 501
             V   ++ KLE        +R R+LG+  ++ +    +  +  +       D+  G ++
Sbjct: 454 GKVHRSKIGKLESI----DNLRARVLGYNSVDKIYELAVDPNVLKMQYIRTKDIPAGELL 509

Query: 502 VKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK- 559
              ++  V S G  ++   G   A  P  H+S+  +V P +KFK+G+++  RVL V  + 
Sbjct: 510 AACEIETVSSSGIQLKILNGQFTASVPPLHISDTRLVYPERKFKIGSKVKGRVLTVDQRG 569

Query: 560 RITVTHKKTLVK---SKLAILSSYAEA----TDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           R+ +T KK+LV     +  I+SS+A A     +   T   +      GC V F+ G++GF
Sbjct: 570 RVFMTLKKSLVNIDTEETPIVSSFALAQEVKNNNKKTVATVQSFRPSGCVVSFFGGIRGF 629

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
            P +E+       P     +GQ V  +++       RI  S  +   +  E   V + +L
Sbjct: 630 LPNAEISEVFVKRPEEHLRLGQTVSVKLLQVDEEKARILTSCKISSEQSQEQKDV-ITNL 688

Query: 673 VSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 725
           V G   +DVV    T ++++V +   G  +G I   HL+D  +E        I  G EF+
Sbjct: 689 VPGKTFIDVVAVEKTKDSIIVEMSKTGL-RGVIYVGHLSDSRIEQNRAALKKITIGAEFN 747

Query: 726 QLLVLDNESSNLL-LSAKYSLINSAQQ--LPSDASHIHPNS---VVHGYVCNIIETGCFV 779
            L++  +  + +  L+ K SLI +A+   LP+  S I   S    + GYV +I   G FV
Sbjct: 748 GLVIDKDVRTQVFNLTLKKSLIKAAKNNTLPTQYSEIKSVSKAEALPGYVKSISNNGVFV 807

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            F G+  G    S AVD +  D+SK +YV QSV + +L  + +  R  L+LK
Sbjct: 808 AFNGKFVGLVLPSYAVDSRDIDISKIFYVNQSVTAYLLRTDDKNERFLLTLK 859



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 13/262 (4%)

Query: 593  ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH--VGQVVKCRIMSSIPASRRI 650
            I KI +    +   N + G A  ++   D        +H  V Q+V   I+S    S+++
Sbjct: 1091 IAKIFEKYILLDLGNKLTGMAFATDALDDFSVTLQDAFHDKVNQIVMATIVSLDVDSKKV 1150

Query: 651  NLSFMMK----PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            NLS   K    PT  S DDL K G +V  +V  V+   + +++      +  +P   L+D
Sbjct: 1151 NLSLRTKDAKTPTITSHDDLKK-GDIVHALVKSVSDKGIFLHL--SRTLEAFVPVTMLSD 1207

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 766
               +    K   K        +V  +E + +L++ + S +N   ++  +   I    VV 
Sbjct: 1208 S--YLKEWKKFYKSMQHVVGKVVKCDEDARILITLRESEVNGELKVLKNYDDIEVGDVVS 1265

Query: 767  GYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
            G V N+ + G FV+      ++G A  S+  D +  D+S  +  G  V++ +L  N E  
Sbjct: 1266 GSVKNVTDFGVFVKLDNTVNVSGLAHISEIADKKPEDISALFGPGDRVKTIVLKTNPEKK 1325

Query: 825  RITLSLKQSCCSSTDASFMQEH 846
            +++LSLK S  ++      +EH
Sbjct: 1326 QLSLSLKASRFTTAQVENEEEH 1347



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 19/153 (12%)

Query: 121  RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANED 180
            +Y     + +I  G  L   +A++ EK +++ L   L G+A A DALD            
Sbjct: 1071 KYHTMKDINSIKVGESLPARIAKIFEKYILLDLGNKLTGMAFATDALDDF---------S 1121

Query: 181  NLLPTIFH--VGQLVSCIVLQLDDDKKEIGKRKIWLSLRL--SLLYKGLSLETVQEGMVL 236
              L   FH  V Q+V   ++ LD D K     K+ LSLR   +      S + +++G ++
Sbjct: 1122 VTLQDAFHDKVNQIVMATIVSLDVDSK-----KVNLSLRTKDAKTPTITSHDDLKKGDIV 1176

Query: 237  TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN 269
             A VKS+ D G  LH    +   F+P   L+++
Sbjct: 1177 HALVKSVSDKGIFLHLS-RTLEAFVPVTMLSDS 1208



 Score = 46.2 bits (108), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 41/179 (22%)

Query: 1375 VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
            ++ V+S G  + +L+ +  A V   ++SD  +  PE++F IG  V GRVL+V+    RV 
Sbjct: 514  IETVSSSGIQLKILNGQFTASVPPLHISDTRLVYPERKFKIGSKVKGRVLTVDQRG-RVF 572

Query: 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN------------ 1481
            +TLK S            L N+   +  I     V S+ L   ++N N            
Sbjct: 573  MTLKKS------------LVNIDTEETPI-----VSSFALAQEVKNNNKKTVATVQSFRP 615

Query: 1482 ----------LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
                      + G    +E+SE  V   E   R G+ V VK+L+VD+EK RI    K S
Sbjct: 616  SGCVVSFFGGIRGFLPNAEISEVFVKRPEEHLRLGQTVSVKLLQVDEEKARILTSCKIS 674



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 204/963 (21%), Positives = 379/963 (39%), Gaps = 177/963 (18%)

Query: 282  GVVRSIDRTR----------KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 331
            G + SID  R          K+  L+ DP+ +     +     + D+    ++ +  +++
Sbjct: 462  GKLESIDNLRARVLGYNSVDKIYELAVDPNVLKMQYIR-----TKDIPAGELLAACEIET 516

Query: 332  ILENGVMLSFLT-YFTGTVDIFHLQNT---FPTTNWKNDYNQHKKVNARILFVDPTSRAV 387
            +  +G+ L  L   FT +V   H+ +T   +P   +K       KV  R+L VD   R V
Sbjct: 517  VSSSGIQLKILNGQFTASVPPLHISDTRLVYPERKFK----IGSKVKGRVLTVDQRGR-V 571

Query: 388  GLTLNPYLLH---NRAP--PSHVKVGDIYDQSK----VVRVDRGLGLLLDIPSTPVSTPA 438
             +TL   L++      P   S     ++ + +K     V+  R  G ++           
Sbjct: 572  FMTLKKSLVNIDTEETPIVSSFALAQEVKNNNKKTVATVQSFRPSGCVVSFFG---GIRG 628

Query: 439  YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP 498
            ++  ++++E  V++ E+  + G  V V++L     +       K S+ +       DV  
Sbjct: 629  FLPNAEISEVFVKRPEEHLRLGQTVSVKLLQVDEEKARILTSCKISSEQSQ--EQKDVIT 686

Query: 499  GMVVKGK----VIAVDSF--GAIVQFP-GGVKALCPLPHMSEFEIVKPG---KKFKVGAE 548
             +V  GK    V+AV+      IV+    G++ +  + H+S+  I +     KK  +GAE
Sbjct: 687  NLV-PGKTFIDVVAVEKTKDSIIVEMSKTGLRGVIYVGHLSDSRIEQNRAALKKITIGAE 745

Query: 549  LVFRVLG--VKSKRITVTHKKTLVKSKL--AILSSYAE---ATDRLITHGWITKIEKHGC 601
                V+   V+++   +T KK+L+K+     + + Y+E    +      G++  I  +G 
Sbjct: 746  FNGLVIDKDVRTQVFNLTLKKSLIKAAKNNTLPTQYSEIKSVSKAEALPGYVKSISNNGV 805

Query: 602  FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM------ 655
            FV F     G    S        + S +++V Q V   ++ +   + R  L+        
Sbjct: 806  FVAFNGKFVGLVLPSYAVDSRDIDISKIFYVNQSVTAYLLRTDDKNERFLLTLKAQKEET 865

Query: 656  ------------MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
                        + P   S +DL   G +VS  +  V  N + + VIA     G +    
Sbjct: 866  AKKTTSSEIVNPIDPAIQSLNDLTT-GKVVSAKIKSVKKNQLNI-VIADNIH-GRVDVAE 922

Query: 704  LADHLEHATVMKSVIKPGYEFDQLLVLD-------------------NESSNLLLSAKYS 744
            + D L+     K  +   ++ DQ + +                    ++ S L LS K S
Sbjct: 923  IFDDLKDIKDRKQPL-SAFKKDQTVKVKIIGYHNIKSHKFLPITHQVSKGSVLELSMKPS 981

Query: 745  LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR----FLGRLTGFAPRSKAVDGQRA 800
            L+NS          I+    + GYV N      ++        RL+ F      + G   
Sbjct: 982  LLNSEDTFSKTIKEINVGEELVGYVNNFASNNLWLTISPVLKARLSVF-----DLAGDNT 1036

Query: 801  DLSK----TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
            +LS+    ++ +G ++   +  ++SE G IT++ K       ++  + E   L  +IA  
Sbjct: 1037 ELSENVEDSFPLGSAIPVKVTSIDSEHGFITVANKYHTMKDINSIKVGES--LPARIA-- 1092

Query: 857  QSSKHNGSELKWVEGFI---IGSVIEGKVHES---NDFGVVVSFEEHSDVYGFITHHQLA 910
                      K  E +I   +G+ + G    +   +DF V +    H  V      +Q+ 
Sbjct: 1093 ----------KIFEKYILLDLGNKLTGMAFATDALDDFSVTLQDAFHDKV------NQIV 1136

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
             AT+ S        LDV    + V+LSL+T                 K     +  DL  
Sbjct: 1137 MATIVS--------LDV--DSKKVNLSLRT--------------KDAKTPTITSHDDLKK 1172

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPS 1030
               V+A+V+ V +  + L L     +    ++   +  K  +K + + Q V+  V+    
Sbjct: 1173 GDIVHALVKSVSDKGIFLHLSRTLEAFVPVTMLSDSYLKEWKKFYKSMQHVVGKVVKCDE 1232

Query: 1031 SSTAGRLLLLLKAISETETSSS-KRAKKKSSYDVGSLVQAEITEIKPLELRLKFG--IGF 1087
             +   R+L+ L+   E+E +   K  K     +VG +V   +  +    + +K    +  
Sbjct: 1233 DA---RILITLR---ESEVNGELKVLKNYDDIEVGDVVSGSVKNVTDFGVFVKLDNTVNV 1286

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1147
             G  HI+E+ D K   +  LF     G  V   I+ K+N P+ K+     LS+K S  T 
Sbjct: 1287 SGLAHISEIADKKPEDISALFGP---GDRVKT-IVLKTN-PEKKQ---LSLSLKASRFTT 1338

Query: 1148 SEI 1150
            +++
Sbjct: 1339 AQV 1341


>gi|336273586|ref|XP_003351547.1| hypothetical protein SMAC_00089 [Sordaria macrospora k-hell]
 gi|380095827|emb|CCC05873.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1776

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 373/1375 (27%), Positives = 667/1375 (48%), Gaps = 150/1375 (10%)

Query: 609  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFMMKPTRVSED 664
            V+   P   L +D G E    Y VG V   R++  ++      I+L  S + +P    ED
Sbjct: 469  VKQVEPEIGLYVDVGVEDVGPYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFLRIED 528

Query: 665  DLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIK 719
              + +G++VSGVV+ +  NA     ++  IA G S G +P  H AD HL++    +   +
Sbjct: 529  --IPVGAVVSGVVEKMVLNAAGVGGLIVKIADGIS-GLVPEMHFADVHLQNP---EKKFR 582

Query: 720  PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETG 776
             G +   ++L  D  S  + L+ K +L+NS   LP+  ++  I       G + N+++ G
Sbjct: 583  EGLKVKARVLSTDAASRQIRLTLKKTLVNS--DLPAIQTYDEITVGQQALGTIINVLQHG 640

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              V+F GRL GF P S+  +    D  + + VGQ+V   ++  + +  ++ +S K     
Sbjct: 641  AIVQFYGRLRGFLPVSEMSEAYIHDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKDPAA- 699

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
                      F LE+++A+              +   IG V+  KV +  D  V V   +
Sbjct: 700  ----------FGLEKQLAL--------------KKLQIGDVVSAKVTQKTDDDVFVELAD 735

Query: 897  HSDVYGFITHHQLAGATVESGSVIQA----------AILDVAKAERLVDLSLKTVFIDRF 946
             S        H    +  ++ S ++            IL+  +A R + LS K + +   
Sbjct: 736  SSLKAILPVAHLTDKSVSKTQSALKKIHVNQTLSELVILEKNEARRSIILSQKPILVKAT 795

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDY 1005
            +E          +   E +   G  + + A    V+    L   LP+        S+   
Sbjct: 796  KEGKFLTSLDGARVGEEVA---GYVRNITATAVFVQFGGKLTALLPK--------SMIPK 844

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE----TETSSSKRA----KK 1057
              Q  P       QS+   + ++  ++   RL++ +   +E     +T   K A    + 
Sbjct: 845  EDQDKPDFGMFKSQSITVKITSV--NNELNRLVVAVPGATEQVKRVDTKGEKLANPVDES 902

Query: 1058 KSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFK 1112
             +S D   +G L +A +  +K  ++ ++      GRI +++V D+   +   +     F+
Sbjct: 903  ITSLDDISIGKLTKARVVSVKDTQVNVQLADNIQGRIDVSQVYDNWEQIKDTKKPLKKFQ 962

Query: 1113 IGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
              Q V  R++    A++++  P   +S   + ELS KPS +        L F+  ++ +G
Sbjct: 963  PKQVVPVRVLGVHDARNHRFLPISHRSSHSVLELSAKPSDVKEGASSEALSFD--NLKVG 1020

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
                G+V  V      + +S  ++ ++  ++++ + S L    + F IG A+   V+S++
Sbjct: 1021 SSYVGFVNNVGQGHLWVNLSPTVRGRVNAMEASDDVSLLTNLAKNFPIGSALRVRVVSVD 1080

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             E K L L  R    G  D   +++ D     I +  I+ G+++K+      ++V++   
Sbjct: 1081 AESKRLDLSAR--SPGSED---ELTWDK----IAQDVILVGKVTKVDER--QVIVKLSET 1129

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1344
            L G VH  +L +       + + + + V+  V+E+ ++ +    + LS R S        
Sbjct: 1130 LAGPVHKVDLADDYEEANPAKFAKNEIVRVAVVEVDKSNK---RIRLSTRPS-------- 1178

Query: 1345 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1404
               L++ +    K + +   L    IV+G+VKNV+ KG F+ L   + A V + NLSD Y
Sbjct: 1179 -RILNSSLPVKDKEIVQHTKLEVGEIVRGFVKNVSDKGLFVTLGGNVTAFVQIKNLSDAY 1237

Query: 1405 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ 1464
            ++  +++F + +LV GR++SV   + R+E++LK S         +  +S+L  G  + G+
Sbjct: 1238 LKYWKEQFQVDQLVKGRIVSVA--NGRIEMSLKPS-VVDKDYVPLTTISDLKEGQTITGR 1294

Query: 1465 IKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
            +++VE +G FI I+ + NL GLCH SE+S+  V +   +Y  G+KVK K+LKVD   +RI
Sbjct: 1295 VRKVEEFGAFIDIDGSDNLSGLCHRSEMSDKAVKDARKLYEEGDKVKAKVLKVDATAKRI 1354

Query: 1524 SLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQ-----DMDMESE 1578
            +LG+K SYF    +       +  +EA E+    +    + ++  AVQ     +++ +SE
Sbjct: 1355 NLGLKPSYF---GEQGDEDEMDVDEEAAEDSEGDDSDEDMSDADGAVQITGTDNIEEDSE 1411

Query: 1579 DGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTD-EAKTIDEKNNRHAKKKE 1637
            D       ++   + V  LE    D    +++G   +    D EA            KK+
Sbjct: 1412 DEDEGSDVEMADASDVKGLEAGGFDWSASLEDGEKADASAADLEA----------LAKKK 1461

Query: 1638 KEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            K  RE +I   +   L+ + P+T  ++ERL+   P+SS +WI YMAF + ++D+  AR +
Sbjct: 1462 KARREPQITVDKTASLDVNGPQTASDYERLLLGQPDSSQLWIAYMAFQMQVSDLAAARQV 1521

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERA++TINI+EE EKLN+W+AY NLE  YGN  EE V +VF+RA  Y D ++V+  L  
Sbjct: 1522 AERAIKTINIKEEIEKLNVWIAYLNLEVAYGN--EETVDEVFKRACTYNDKQEVYERLAS 1579

Query: 1758 LYERTEQNKLADELLYKMIKKFKH-SCKVWLRRVQRL--LKQQQEGVQAVVQRA--LLSL 1812
            +Y ++ + K AD+L  K++K+F + S +VW+     L       +  +A+++RA  +L  
Sbjct: 1580 IYIQSGKRKEADDLFEKIVKEFGYKSPEVWVNYAHFLHTTMHSPDRARALLKRATQVLGK 1639

Query: 1813 PRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD- 1869
              H +I  + + A LEF+  NG  ++GR++FE +L+ YPK+ DLW+  +D E    D D 
Sbjct: 1640 ETHLYIALLPKFAALEFRSPNGDKEQGRTLFENLLATYPKKFDLWNQLIDLETSAADADK 1699

Query: 1870 -LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922
             +IR LF+R   +  L P++ K  F+++ ++E+  G+++  E V  KA E+  + 
Sbjct: 1700 GVIRDLFDRGSKVKGLKPRQAKAWFRRWAQWEEKNGDKKSREKVSAKAQEWARTA 1754



 Score =  192 bits (489), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 230/888 (25%), Positives = 373/888 (42%), Gaps = 95/888 (10%)

Query: 4   SSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLT 63
           S+R S++  S D P     +K     S K    A  A   +    ++ P+FPRGG   LT
Sbjct: 25  STRPSKRPKSNDAPNKKAGAKKPGPKSDKPAPPAPTAPANSSLLKEEEPMFPRGGASVLT 84

Query: 64  QRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPR 121
             E  +I   A  DA FE             KK    K  +         GD    K   
Sbjct: 85  PLEYKQIQVQARSDALFEE-----QSGKADAKKAGGEKEGKQKKSKKRSKGDDTPAKPDE 139

Query: 122 YANKI---TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN 178
            A K+     K +  G  + G V  +N  D+ + LP  + G      A+   L   +EA+
Sbjct: 140 DAVKVESLNFKRLVKGSLVLGSVCAINALDIAVALPNNIIGHV-PITAISAPLTKRLEAS 198

Query: 179 --------------EDNLLPTIFHVGQLVSCIVLQLDDDKKE----IGKRKIWLSLRLSL 220
                          D  L +IF +GQ V   V+   D+         KR I LSL+ SL
Sbjct: 199 AGDDDAEESDDENENDVDLESIFQIGQYVRAYVVSTVDEASTHTPGKAKRHIELSLQPSL 258

Query: 221 LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID-VKPG 277
              G++ + V     + A + S+EDHGY++   +      GFL R  + ++   + ++PG
Sbjct: 259 ANTGMAEQDVVVNSTVMAAIASVEDHGYVMDIEIADSKLQGFLARKQVDKSIPQEALQPG 318

Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
            +L  +V    +  K+V LS+  +T+           +ID  +PG      V  +  +G+
Sbjct: 319 AVLLCMVTKSAKG-KIVQLSTLGETIGNVENVPAAATTIDTFLPGTAADVLVSEVSNHGI 377

Query: 338 MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL-------- 389
           +   +     T D+ H        + ++ Y    ++ AR++   PT++   L        
Sbjct: 378 VGKIMGSLDVTADLVHSGAGPDGVDLEDTYKVGSRLKARVICNFPTAKNPKLGISVLKHV 437

Query: 390 -TLNPYLLHNRAPP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD 444
            +L P        P      +    I ++  V +V+  +GL +D           V + D
Sbjct: 438 TSLKPKTASKDEQPVVPLQALPHSTIVEKCTVKQVEPEIGLYVD-----------VGVED 486

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           V           YK GS    R++G+   +G+    L+ S  E       D+  G VV G
Sbjct: 487 VG---------PYKVGSVHAGRVVGYNAFDGMYLISLEKSVLEQPFLRIEDIPVGAVVSG 537

Query: 505 KV-----IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VK 557
            V      A    G IV+   G+  L P  H ++  +  P KKF+ G ++  RVL     
Sbjct: 538 VVEKMVLNAAGVGGLIVKIADGISGLVPEMHFADVHLQNPEKKFREGLKVKARVLSTDAA 597

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           S++I +T KKTLV S L  + +Y E T      G I  + +HG  V+FY  ++GF P SE
Sbjct: 598 SRQIRLTLKKTLVNSDLPAIQTYDEITVGQQALGTIINVLQHGAIVQFYGRLRGFLPVSE 657

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLV 673
           +      +P   + VGQ V   ++S  P + ++ +S         E  L    +++G +V
Sbjct: 658 MSEAYIHDPKEHFRVGQTVSIYVISFDPDAAKLIVSCKDPAAFGLEKQLALKKLQIGDVV 717

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEFDQLLVL 730
           S  V   T + V V  +A    K  +P  HL D  +  +  +S +K         +L++L
Sbjct: 718 SAKVTQKTDDDVFVE-LADSSLKAILPVAHLTD--KSVSKTQSALKKIHVNQTLSELVIL 774

Query: 731 D-NES-SNLLLSAKYSLINSAQQ---LPS-DASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           + NE+  +++LS K  L+ + ++   L S D + +     V GYV NI  T  FV+F G+
Sbjct: 775 EKNEARRSIILSQKPILVKATKEGKFLTSLDGARV--GEEVAGYVRNITATAVFVQFGGK 832

Query: 785 LTGFAPRS--KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           LT   P+S     D  + D     +  QS+   I  VN+E  R+ +++
Sbjct: 833 LTALLPKSMIPKEDQDKPDFG--MFKSQSITVKITSVNNELNRLVVAV 878



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 4/176 (2%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            +  H+ ++ G +V+G V  V   G  V   G V A   + ++S+  +    ++F+V   +
Sbjct: 1192 IVQHTKLEVGEIVRGFVKNVSDKGLFVTLGGNVTAFVQIKNLSDAYLKYWKEQFQVDQLV 1251

Query: 550  VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YN 607
              R++ V + RI ++ K ++V      L++ ++  +     G + K+E+ G F+     +
Sbjct: 1252 KGRIVSVANGRIEMSLKPSVVDKDYVPLTTISDLKEGQTITGRVRKVEEFGAFIDIDGSD 1311

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
             + G   RSE+      +   +Y  G  VK +++     ++RINL   +KP+   E
Sbjct: 1312 NLSGLCHRSEMSDKAVKDARKLYEEGDKVKAKVLKVDATAKRINLG--LKPSYFGE 1365


>gi|367003163|ref|XP_003686315.1| hypothetical protein TPHA_0G00450 [Tetrapisispora phaffii CBS 4417]
 gi|357524616|emb|CCE63881.1| hypothetical protein TPHA_0G00450 [Tetrapisispora phaffii CBS 4417]
          Length = 1706

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 360/1257 (28%), Positives = 593/1257 (47%), Gaps = 186/1257 (14%)

Query: 732  NESSNLLLSAKYSLINSAQQLP-------SDASHI-HPNSVVHGYVCNIIETGCFVRFLG 783
            N+  ++ ++ K +L+N+             DA+ +   NS     V      G  + F G
Sbjct: 560  NDRGHIFVTLKKTLVNTTDDDDFTIITSYDDATAVKESNSKTIATVLQFRPAGAVISFFG 619

Query: 784  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
             + GF P S+  +       +   +GQ+V   +L+V+ E  RI  + K S   S +   +
Sbjct: 620  GVRGFIPNSEISEAFVRRPEEHLRLGQTVIVKLLEVSGERSRIVGTCKVSAAKSAEQKDL 679

Query: 844  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYG 902
                                     ++ F++G ++I+ +V E     V+V  ++ S++ G
Sbjct: 680  -------------------------IKSFVLGRTIIDVEVIEKTKESVLVELKD-SELRG 713

Query: 903  FITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
             I    L+ + +E           GS ++  I+D+    ++ ++SLK   I   ++A   
Sbjct: 714  VINVGHLSDSRIEQNRAELKKIRIGSKLRGLIIDIDSKTQIFNMSLKKSLI---KDAEKE 770

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVE---IVKEN--YLVLSLPEY---NHSIGYASVSD 1004
                  ++     K   +H  V ++      V  N  ++ L LP +   +  I   S+  
Sbjct: 771  ILPINYQQIVSVGKSTPLHGYVKSVSNKGVFVAFNGKFVGLVLPNFAVESRKIDINSIYY 830

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL-----KAISETETSSSKRAKKKS 1059
             N            QSV A ++         R LL L     K    T T +S      S
Sbjct: 831  VN------------QSVTAYLLRFDDGKE--RFLLSLRDEKPKQKENTITPASLLNPVDS 876

Query: 1060 SYD------VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNF 1111
            S        +G  ++A+IT +K  +L +       GRIHI EV D+   +   ++  SNF
Sbjct: 877  SVSNFADCTLGKFIKAKITAVKKNQLNVNIADNLFGRIHIAEVYDNLKQIKDAKHPLSNF 936

Query: 1112 KIGQTVTARIIA---------KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1162
            K+G  V  ++I           S   ++K   + EL++KPS +  +E+    L +  D+ 
Sbjct: 937  KVGDIVNVKVIGLHDFVNHKFVSKFSELKAKSILELTMKPSEMKSNEVK---LLKASDLE 993

Query: 1163 IGQRVTGYVYKVDNE--WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +GQ + G+V  V +   W  +T S H +   F L      S  +       IG A+   +
Sbjct: 994  VGQDIVGFVNNVKDSTIWLSITPSLHARLSSFNLTENSNDSNGESL-----IGSALKVQI 1048

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
             SI+ +     L+++   D + D             I+ G  V  +I K+   +  L ++
Sbjct: 1049 KSIDSKNN--SLIVKTESDSVVD-------------INVGSTVDAKIVKVTDKLVLLQLR 1093

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGT---FHVE-----LS 1332
             G +              ++D L  Y +    +     IS+ +  T   F+ E     LS
Sbjct: 1094 NGSNAVS----------YITDALDDYSK-TLPEVYGNMISKIIPATVLAFNAENNKIKLS 1142

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
            LRS   G  S            P  H     DL PN IV   VKNVT KG F+ LS  LD
Sbjct: 1143 LRSK--GAYSL-----------PTVHT----DLKPNDIVNAIVKNVTEKGIFVALSSNLD 1185

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
            A V +S LSD Y++  +  F   + V G+V++    S R+ +TLK S+     Q  + N 
Sbjct: 1186 AFVPISKLSDSYLKEWKAFFKPMQPVVGKVVTCANNS-RILLTLKESEVNGEIQI-LKNY 1243

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
            +++ VGDI  G +K V  +G+F+ ++NT N+ GL H SE++E   +++++++  G+KVK 
Sbjct: 1244 NDIKVGDIFSGVVKNVADFGVFVKLDNTLNVSGLAHSSEVAESVPEDLQSLFGPGDKVKA 1303

Query: 1512 KILKVDKEKRRISLGMKSSYFK--NDADNLQMSSEEESDEAIEEVGSYNRS---SLLENS 1566
             +LKV+ EK+++SL +K+S+F   N   +   SS+E+ D  +E+    N S   S +E++
Sbjct: 1304 YVLKVNPEKKQLSLSLKASHFSKTNSGKSANDSSDEDGDVIMEDAEYNNVSDAGSDVEDT 1363

Query: 1567 SVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID 1626
            +  +    + S DG SL  A  +  A +      LD  Q D ++   ++   T       
Sbjct: 1364 TTVITKQAVMSTDGLSLS-AGFDWTAKI------LDQAQSDDESEEDEDFTET------- 1409

Query: 1627 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1686
             K NRH KK+     ++ I       +   AP +  +FERL+  +PNSS VW+ YMAF L
Sbjct: 1410 -KKNRHRKKRAHVVEDKTID------INTRAPESVGDFERLIMGNPNSSVVWMNYMAFQL 1462

Query: 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1746
             +++++KAR I+ERAL+TIN REE EKLNIW+A  NLEN +G+  EE +  VF++A QY 
Sbjct: 1463 QLSEIDKAREISERALKTINFREEAEKLNIWIAKLNLENTFGS--EETLEDVFKKACQYM 1520

Query: 1747 DPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEG-VQAV 1804
            D   +H  LL + + + Q     EL     KKF      +W+     L+ Q+Q    + +
Sbjct: 1521 DSFTIHSKLLSILQMSGQTNKTAELFKTTAKKFGSEKVSIWVSWGDWLISQKQSNEARNI 1580

Query: 1805 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1864
            +  AL +LP+  HI+ + + A LE+  G  +RGRS+FEG++++  KR D+W++Y+DQEI+
Sbjct: 1581 LSSALKALPKRHHIEVVRKFAQLEYAKGDPERGRSLFEGLIADAGKRIDIWNVYIDQEIK 1640

Query: 1865 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            + D   +  LFER I   +  K+ KF F K+L+YE+   +E+ I YVK KA E+ ES
Sbjct: 1641 VDDKKKVEDLFERVIQKKITRKQAKFFFNKWLQYEEGKEDEKAIGYVKAKATEFAES 1697



 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 335/1422 (23%), Positives = 582/1422 (40%), Gaps = 238/1422 (16%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKAN------------ 101
            FPRGG  +LT  E  ++  E      A    L   N KKK+++    +            
Sbjct: 37   FPRGGASALTSLELKQVSNE------AANDVLFGNNGKKKRESPSTGSKSKKSNKKSKKA 90

Query: 102  -----ETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGG 156
                 E VDD    F              +  KN+  G +L G ++ +   DL I    G
Sbjct: 91   DATELELVDDEDDEFA---------IIQHVNFKNLKVGSQLLGQISSITRNDLRISFTDG 141

Query: 157  LRGLARAADALDPILDNEIEANED------------------------------NLLPTI 186
            + G     +  + I D   + +E+                              NL+  +
Sbjct: 142  INGYVPITNISEQITDILTQIDEEMADSSDDSDSDEEYESSDDKSEKKKLTEKPNLID-L 200

Query: 187  FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 243
            F VGQ + C V +   LD   K+  KR++ LS+  S +    S + + +   +   VKSI
Sbjct: 201  FKVGQWLRCSVTENTALDATTKK--KRRLELSIEPSAV-NTFSADDLNKFSTVQCSVKSI 257

Query: 244  EDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKVVYLSSDPDT 302
            EDHG IL  G+ +FTGF+ + +    +  ++KPG + L  ++   DRT  V  + S  + 
Sbjct: 258  EDHGAILDLGISNFTGFISKKD--SKTFDNLKPGHVFLANIINKSDRTVTVNQVFSKKNK 315

Query: 303  VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 362
            VS          SID +VPG +V    + I  NG+         G +   HL+ TF    
Sbjct: 316  VSHIS-------SIDCVVPGQLVEFLSEKIGGNGIFGKAFGSIAGYITDIHLE-TFSEEK 367

Query: 363  WKNDYNQHKKVNARILFVDPTSRA---VGLTLNPYLLHNRAPPSHVK------VGDIYDQ 413
             K  +   + V ARI+ + P       + L+   +++   +  S ++      +G  +D 
Sbjct: 368  LKEKFPVGQNVPARIIAILPNKEGDNVLLLSAQTHIISLTSVLSEIENLEAFPIGYTFDS 427

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
            + +   D    L L + +  V       I    E E             +  R+LG+  +
Sbjct: 428  ATIKGRDSSF-LYLTLDNERVGQVHNKNIGSALESE------------KISARVLGYTSV 474

Query: 474  EGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQFPGG-VKALCPLPHM 531
            +                    D+K G V+   ++ AV + G  ++  GG   A  P  H+
Sbjct: 475  DNAFQLSTDPEMLAKKYVRAIDIKIGEVLTNCEITAVSTEGIQLKLFGGQFTAFVPPLHI 534

Query: 532  SEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVKSK----LAILSSYAEAT-- 584
            S+ ++V P +KFK+ +++  RVL V  +  I VT KKTLV +       I++SY +AT  
Sbjct: 535  SDTKLVYPERKFKIASKVKGRVLNVNDRGHIFVTLKKTLVNTTDDDDFTIITSYDDATAV 594

Query: 585  --DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
                  T   + +    G  + F+ GV+GF P SE+       P     +GQ V  +++ 
Sbjct: 595  KESNSKTIATVLQFRPAGAVISFFGGVRGFIPNSEISEAFVRRPEEHLRLGQTVIVKLLE 654

Query: 643  SIPASRRINLSFMMKPTRVSED-DLVKLGSLVSGVVDV----VTPNAVVVYVIAKGYSKG 697
                  RI  +  +   + +E  DL+K   L   ++DV     T  +V+V  +     +G
Sbjct: 655  VSGERSRIVGTCKVSAAKSAEQKDLIKSFVLGRTIIDVEVIEKTKESVLVE-LKDSELRG 713

Query: 698  TIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LP 753
             I   HL+D  +E        I+ G +   L++ +D+++    +S K SLI  A++  LP
Sbjct: 714  VINVGHLSDSRIEQNRAELKKIRIGSKLRGLIIDIDSKTQIFNMSLKKSLIKDAEKEILP 773

Query: 754  SDASHI---HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
             +   I     ++ +HGYV ++   G FV F G+  G    + AV+ ++ D++  YYV Q
Sbjct: 774  INYQQIVSVGKSTPLHGYVKSVSNKGVFVAFNGKFVGLVLPNFAVESRKIDINSIYYVNQ 833

Query: 811  SVRSNILDVNSETGRITLSL-----KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
            SV + +L  +    R  LSL     KQ   + T AS +            + SS  N ++
Sbjct: 834  SVTAYLLRFDDGKERFLLSLRDEKPKQKENTITPASLLNP----------VDSSVSNFAD 883

Query: 866  LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH-------SDVYGFITH-----HQLAGAT 913
                    +G  I+ K+       + V+  ++       ++VY  +       H L+   
Sbjct: 884  C------TLGKFIKAKITAVKKNQLNVNIADNLFGRIHIAEVYDNLKQIKDAKHPLSNFK 937

Query: 914  VESGSVIQAAILDV--------------AKAERLVDLSLKTVFIDRFREANSNRQAQKKK 959
            V  G ++   ++ +               KA+ +++L++K        E  SN      +
Sbjct: 938  V--GDIVNVKVIGLHDFVNHKFVSKFSELKAKSILELTMKP------SEMKSN------E 983

Query: 960  RKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQ 1019
             K   + DL V Q +   V  VK++ + LS+    H    A +S +N  +       NG+
Sbjct: 984  VKLLKASDLEVGQDIVGFVNNVKDSTIWLSITPSLH----ARLSSFNLTENSNDS--NGE 1037

Query: 1020 SVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD--VGSLVQAEITEIKPL 1077
            S+I + + +            +K+I     S   + +  S  D  VGS V A+I ++   
Sbjct: 1038 SLIGSALKVQ-----------IKSIDSKNNSLIVKTESDSVVDINVGSTVDAKIVKVTDK 1086

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1137
             + L+   G +   +IT+  DD S  +  ++ N  I + + A ++A + + +  K     
Sbjct: 1087 LVLLQLRNGSNAVSYITDALDDYSKTLPEVYGNM-ISKIIPATVLAFNAENNKIK----- 1140

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
            LS++      S+    L     D+     V   V  V  +   + +S +L A  F+  S 
Sbjct: 1141 LSLR------SKGAYSLPTVHTDLKPNDIVNAIVKNVTEKGIFVALSSNLDA--FVPISK 1192

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
               S L+E++  F   + V G V++     ++L L L+  +     + +   ND     I
Sbjct: 1193 LSDSYLKEWKAFFKPMQPVVGKVVTCANNSRIL-LTLKESEVNGEIQILKNYND-----I 1246

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHL--YGRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
              GDI  G +  +     G+ V++   L   G  H +E+      D  S +  G  VK  
Sbjct: 1247 KVGDIFSGVVKNVAD--FGVFVKLDNTLNVSGLAHSSEVAESVPEDLQSLFGPGDKVKAY 1304

Query: 1316 VLEISRTVRGTFHVELSLRSSL-----DGMSSTNSSDLSTDV 1352
            VL+++   +    + LSL++S       G S+ +SSD   DV
Sbjct: 1305 VLKVNPEKK---QLSLSLKASHFSKTNSGKSANDSSDEDGDV 1343


>gi|340959662|gb|EGS20843.1| hypothetical protein CTHT_0026810 [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1796

 Score =  392 bits (1007), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 390/1519 (25%), Positives = 712/1519 (46%), Gaps = 195/1519 (12%)

Query: 488  GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKA--LCPLPHMSEFEIVKPGKKF 543
            G V  H DV   +V  G     D    + Q+  G  VKA  +C  P  +         K 
Sbjct: 366  GKVMGHLDVTADIVHSGS--GPDGADLVNQYKVGSRVKARVICNFPTAN---------KP 414

Query: 544  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCF 602
            K+G  L+  VL +K K        T  K    +L +   A   +I    + ++E   G +
Sbjct: 415  KLGISLLPHVLSLKPK--------TTTKDGQEVLPTDVLAHSAIIQECRVERVEPGIGLY 466

Query: 603  VRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SF 654
            V     GV GF   S +    +D   E S  Y +G V   R++  +S      ++L  S 
Sbjct: 467  VNVGVEGVSGFVHISRVKDGKIDTLFENSGPYKIGSVHPGRVVGYNSFDGVYLLSLEKSV 526

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV----VVYVIAKGYSKGTIPTEHLAD-HLE 709
            + +P    ED  + +G++VSG V+ +  N      ++  IA+G S G +P  H++D HL+
Sbjct: 527  LEQPFLRIED--IPIGAVVSGQVEKLVVNTQGFGGLIVKIAEGIS-GLVPEMHVSDVHLQ 583

Query: 710  HATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
            H    +   + G +    ++  N + + + L+ K +L+NS          +       G 
Sbjct: 584  HP---EKKFREGMKVKARVLSTNPARHQVRLTLKKTLVNSDAPAIKSYDELAVGMQAFGT 640

Query: 769  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
            +  +++ G  V+F G+L GF P S+  +    D  + + VGQ+V   +L  + E  R+ +
Sbjct: 641  IVAVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPKEHFRVGQTVSIYVLSFDPEVARLIV 700

Query: 829  SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 888
            S K               F LE+++A+              +   +G V+  KV +  + 
Sbjct: 701  SCKDPSA-----------FGLEKQLAL--------------KKLQVGDVVSAKVTQKTED 735

Query: 889  GVVVSFEEHSDVYGFITHHQLAGATVE-----------SGSVIQAAILDVAKAERLVDLS 937
             V V   + S +   +    L   +V            + ++ +  +L+  +  R + LS
Sbjct: 736  DVFVELID-SSLKAILPVGHLTDKSVNKTQAALKRIHVNQTLTELVVLEKNEGRRSIILS 794

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
             K   +          QA K+ +      D  + + V   V  +  +   +       ++
Sbjct: 795  HKPSLV----------QAGKEGKLISTVDDARLGEQVPGFVRNITASAAFVQFGSKLTAL 844

Query: 998  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK 1057
               S+   +    P       QS++  + ++      GRL++ + + ++ E+   ++   
Sbjct: 845  LPKSLMPQDWHDKPNFGLHKYQSLLVKITSI--DKELGRLVVAIPSAADQESKKPEKPAD 902

Query: 1058 KS------------SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE 1105
            ++               +G L +A +  +K  +L ++      GRI ++++ D   ++ +
Sbjct: 903  QAVNPLDETVTTMADLTIGKLTKARVRAVKETQLNVEIADNIQGRIDVSQIFDKWEDIPD 962

Query: 1106 --NLFSNFKIGQTVTARII----AKSNK--PDMKKS--FLWELSIKPSMLTVSEIGSKLL 1155
                   FK    +  R++    A++++  P   +S   + ELS KPS +    +   L 
Sbjct: 963  PRRPLKRFKPKDIIDVRVLGIHDARNHRFLPITHRSSHAVLELSAKPSDVQAPSLPEPLS 1022

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
             E+ +V  G     +V  V + +  + +S +++ ++  ++++ + S+L   +R F IG A
Sbjct: 1023 LEKIEV--GSTHLAFVNNVASNYLWVNLSPNVRGRISAMEASNDLSKLANLERSFPIGCA 1080

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   VLS++KEK  + L         S +T   S++     I +G ++  +++KI     
Sbjct: 1081 LKVRVLSVDKEKSRVDL---------SARTPGASHELTWDMIEQGMVLPAKVTKI--NDR 1129

Query: 1276 GLVVQIGPHLYGRVHFTELKN-ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
             ++V++   + G VH  +L +    ++PLS + + + V+  V+E+ ++ +    + LS+R
Sbjct: 1130 QVIVKLSESVAGPVHLPDLADDYDEANPLS-HSKFEIVRVAVVEVDKSNK---KLRLSMR 1185

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
             S           L++ +    + + K   L    I++G+VKNV+ KG F+ L   + A 
Sbjct: 1186 PS---------RVLNSSLPIKDREITKNTKLQVGDIIRGFVKNVSDKGLFVNLGGDVVAL 1236

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V + NLSD Y++  ++ F + +LV GR++S+     R+E++LK S         I  +S+
Sbjct: 1237 VKIKNLSDSYLKDWKEHFQVDQLVKGRIISLA--DGRIEMSLKQSVVEKDYVPPIT-ISD 1293

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTN-LVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
            L  G  V G++++VE +G FI I+ ++ L GLCH SE+++  V +  T+Y  G++VK ++
Sbjct: 1294 LKEGQTVTGKVRKVEEFGAFIDIDGSDRLSGLCHRSEMADRMVQDARTLYNEGDRVKARV 1353

Query: 1514 LKVDKEKRRISLGMKSSYFKNDADN-------------LQMSSEEESDEAIEEVGSYNRS 1560
            LKVD E +RI+LG+K SYFK+  ++             L   ++ +SDE + ++G     
Sbjct: 1354 LKVDVENKRINLGLKPSYFKDGDEDDVDVDSDSDAGAALNGGADSDSDEEMSDIGGALVV 1413

Query: 1561 SLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTD 1620
               ++ S   +D D+E  +     L  +E+         NLD          + + G+ D
Sbjct: 1414 GESDDESDEEKDSDIEMTEAPEEGLIGLEA-GGFDWAAANLD----------ADDHGNAD 1462

Query: 1621 EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIK 1680
             A+           KK K+ RE +    +   L+ + P+T  +FERL+   P+SS +WI 
Sbjct: 1463 VAEV--------PSKKAKKRREPQGIVDKTAELDVNGPQTASDFERLLLGQPDSSELWIA 1514

Query: 1681 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1740
            YMA  + + D+  AR IAERAL+TINIREE EKLN+W+AY NLE  YG   +E V +VF+
Sbjct: 1515 YMASQMQVNDLSSARQIAERALKTINIREETEKLNVWIAYLNLEVAYGT--DETVQEVFK 1572

Query: 1741 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ--Q 1797
            RA  Y D ++VH  L  +Y ++ + K A++L  K++KK+   +  VW      L  +  +
Sbjct: 1573 RACTYNDDREVHERLASIYIQSGKYKEAEDLFEKIVKKYGSEAPHVWYNYAHFLHTKSNK 1632

Query: 1798 QEGVQAVVQRA--LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTD 1853
             E  +A+++RA  +L   +  ++  + + A LEF+  NG  ++GR++FE +L+ YPKR D
Sbjct: 1633 PEQARALLKRATQVLGNTKDTYLYLLPKFAALEFRSPNGDREQGRTLFEKLLATYPKRFD 1692

Query: 1854 LWSIYLDQEIRL-------GDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEE 1905
            LW+  LD E           D  +IR LFER   +  L P++ K  F+++ ++E+  G+ 
Sbjct: 1693 LWNQLLDLETSASSVAKNPADPSVIRDLFERGTKVKGLRPRQAKAWFRRWAQWEEKFGDA 1752

Query: 1906 ERIEYVKQKAMEYVESTLA 1924
            +  E V  KA E+  +  A
Sbjct: 1753 KSREKVSAKAQEWARAKAA 1771



 Score =  216 bits (550), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 236/893 (26%), Positives = 398/893 (44%), Gaps = 74/893 (8%)

Query: 2   AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPP----DDDVPVFPRG 57
            +S+ KS++  S +  K  K   N+     KQ+     A+ +  P      D+ P+FPRG
Sbjct: 12  GSSASKSKRAKSGETTKDTKIDSNK---DAKQLKTPAVAKPITTPVVTVLKDEEPLFPRG 68

Query: 58  GGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGI 115
           GG  LT  E+ +I   A+ D  FE  ++G     +    ++++K    +++  +   D  
Sbjct: 69  GGSVLTPLEQKQISIQAKKDVLFEEAKKG---GKEDTAARSKKKRKSKIEEPATKSKDED 125

Query: 116 SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL- 171
           S K+      +  K +  G  + G +  ++  ++ + LP  L G   +   +++L   L 
Sbjct: 126 SVKI----ESLNFKRLVKGSLVLGTICGISPLEIAVALPNNLIGHVPITAISESLTQRLQ 181

Query: 172 ---------DNEIEANEDNL----LPTIFHVGQLVSC-IVLQLDDDKKEIGKRKIWLSLR 217
                    D E   +E+NL    +    H+GQ V   +V  +D+      +R I LSL 
Sbjct: 182 ALQANGEKGDGEESGDENNLDDIDINLFVHLGQYVRAYVVSTIDESVAGKTRRHIELSLY 241

Query: 218 LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID-V 274
            +    GLS + +     L A V S+EDHG+++  G+      GFLPR  L  +   + V
Sbjct: 242 PAHANSGLSEQDIVLNSTLMASVVSVEDHGFVMDIGISDSQLKGFLPRKQLDPSIPEETV 301

Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
           +PG +L  +V     + KVV LS+  D +        +  +ID  +PG      V  +  
Sbjct: 302 QPGSVLLCIVTGKAASGKVVQLSTLVDRLGNPKHFPAEATTIDTFLPGTAAEVLVSEVHT 361

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLN 392
           +G++   + +   T DI H  +     +  N Y    +V AR++   PT+    +G++L 
Sbjct: 362 HGLVGKVMGHLDVTADIVHSGSGPDGADLVNQYKVGSRVKARVICNFPTANKPKLGISLL 421

Query: 393 PYLLHNRAPPSHVKVGD------------IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYV 440
           P++L  + P +  K G             I  + +V RV+ G+GL +++    VS   +V
Sbjct: 422 PHVLSLK-PKTTTKDGQEVLPTDVLAHSAIIQECRVERVEPGIGLYVNVGVEGVS--GFV 478

Query: 441 TISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
            IS V + ++  L      YK GS    R++G+   +G+    L+ S  E       D+ 
Sbjct: 479 HISRVKDGKIDTLFENSGPYKIGSVHPGRVVGYNSFDGVYLLSLEKSVLEQPFLRIEDIP 538

Query: 498 PGMVVKGKV----IAVDSFGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
            G VV G+V    +    FG  IV+   G+  L P  H+S+  +  P KKF+ G ++  R
Sbjct: 539 IGAVVSGQVEKLVVNTQGFGGLIVKIAEGISGLVPEMHVSDVHLQHPEKKFREGMKVKAR 598

Query: 553 VLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VL     R  + +T KKTLV S    + SY E    +   G I  + +HG  V+FY  ++
Sbjct: 599 VLSTNPARHQVRLTLKKTLVNSDAPAIKSYDELAVGMQAFGTIVAVLQHGAIVQFYGQLR 658

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---- 666
           GF P SE+      +P   + VGQ V   ++S  P   R+ +S         E  L    
Sbjct: 659 GFLPVSEMSEAYIHDPKEHFRVGQTVSIYVLSFDPEVARLIVSCKDPSAFGLEKQLALKK 718

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFD 725
           +++G +VS  V   T + V V +I     K  +P  HL D   + T      I       
Sbjct: 719 LQVGDVVSAKVTQKTEDDVFVELIDSSL-KAILPVGHLTDKSVNKTQAALKRIHVNQTLT 777

Query: 726 QLLVLD-NES-SNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           +L+VL+ NE   +++LS K SL+ + ++  L S          V G+V NI  +  FV+F
Sbjct: 778 ELVVLEKNEGRRSIILSHKPSLVQAGKEGKLISTVDDARLGEQVPGFVRNITASAAFVQF 837

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             +LT   P+S          +   +  QS+   I  ++ E GR+ +++  + 
Sbjct: 838 GSKLTALLPKSLMPQDWHDKPNFGLHKYQSLLVKITSIDKELGRLVVAIPSAA 890



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 182/869 (20%), Positives = 322/869 (37%), Gaps = 183/869 (21%)

Query: 131  ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVG 190
            ++ GM+ +G +  V +   ++   G LRG    ++  +  + +  E          F VG
Sbjct: 631  LAVGMQAFGTIVAVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPKEH---------FRVG 681

Query: 191  QLVSCIVLQLDDDKKEIGKRKIWLSLRLSL-LYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
            Q VS  VL  D    E+ +  +      +  L K L+L+ +Q G V++A V    +    
Sbjct: 682  QTVSIYVLSFD---PEVARLIVSCKDPSAFGLEKQLALKKLQVGDVVSAKVTQKTEDDVF 738

Query: 250  LHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVYLSSDPD 301
            +     S    LP  +L + S    +  L        L + VV   +  R+ + LS  P 
Sbjct: 739  VELIDSSLKAILPVGHLTDKSVNKTQAALKRIHVNQTLTELVVLEKNEGRRSIILSHKPS 798

Query: 302  TVSKCVTKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
             V     K+ K IS +D    G  V   V++I  +   + F +  T       L  +   
Sbjct: 799  LVQ--AGKEGKLISTVDDARLGEQVPGFVRNITASAAFVQFGSKLTAL-----LPKSLMP 851

Query: 361  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 420
             +W      H K N             GL     LL                  K+  +D
Sbjct: 852  QDW------HDKPN------------FGLHKYQSLL-----------------VKITSID 876

Query: 421  RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
            + LG L+            V I   A++E +K EK   +                     
Sbjct: 877  KELGRLV------------VAIPSAADQESKKPEKPADQA-------------------- 904

Query: 481  LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIV-- 537
               +  +  V T +D+  G + K +V AV      V+    ++    +  +  ++E +  
Sbjct: 905  --VNPLDETVTTMADLTIGKLTKARVRAVKETQLNVEIADNIQGRIDVSQIFDKWEDIPD 962

Query: 538  --KPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATD----RL 587
              +P K+FK    +  RVLG+   R    + +TH+     S  A+L   A+ +D     L
Sbjct: 963  PRRPLKRFKPKDIIDVRVLGIHDARNHRFLPITHR-----SSHAVLELSAKPSDVQAPSL 1017

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---------------YHV 632
                 + KIE     + F N V        L  +     S+M               + +
Sbjct: 1018 PEPLSLEKIEVGSTHLAFVNNVASNYLWVNLSPNVRGRISAMEASNDLSKLANLERSFPI 1077

Query: 633  GQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVKLGSLVSGVVDVVTPNAVVVYVI 690
            G  +K R++S      R++LS    P    E   D+++ G ++   V  +    V+V + 
Sbjct: 1078 GCALKVRVLSVDKEKSRVDLS-ARTPGASHELTWDMIEQGMVLPAKVTKINDRQVIVKLS 1136

Query: 691  AKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS-LIN 747
                  G +    LAD  + A  +       +E  ++ V++ + SN  L LS + S ++N
Sbjct: 1137 ES--VAGPVHLPDLADDYDEANPLS---HSKFEIVRVAVVEVDKSNKKLRLSMRPSRVLN 1191

Query: 748  SAQQLPSDASHIHPNS------VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
            S+  LP     I  N+      ++ G+V N+ + G FV   G +          D    D
Sbjct: 1192 SS--LPIKDREITKNTKLQVGDIIRGFVKNVSDKGLFVNLGGDVVALVKIKNLSDSYLKD 1249

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 861
              + + V Q V+  I+ +    GRI +SLKQS         +++ ++    I+ L+    
Sbjct: 1250 WKEHFQVDQLVKGRIISLAD--GRIEMSLKQSV--------VEKDYVPPITISDLKE--- 1296

Query: 862  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
                         G  + GKV +  +FG  +  +    + G     ++A   V+      
Sbjct: 1297 -------------GQTVTGKVRKVEEFGAFIDIDGSDRLSGLCHRSEMADRMVQDARTLY 1343

Query: 917  --GSVIQAAILDVAKAERLVDLSLKTVFI 943
              G  ++A +L V    + ++L LK  + 
Sbjct: 1344 NEGDRVKARVLKVDVENKRINLGLKPSYF 1372



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 169/377 (44%), Gaps = 46/377 (12%)

Query: 221  LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL----PRNNLAENSGID--V 274
            L + LSLE ++ G    A+V ++  +   ++   P+  G +      N+L++ + ++   
Sbjct: 1017 LPEPLSLEKIEVGSTHLAFVNNVASNYLWVNLS-PNVRGRISAMEASNDLSKLANLERSF 1075

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
              G  L+  V S+D+ +  V LS+     S  +T        D++  GM++  +V  I +
Sbjct: 1076 PIGCALKVRVLSVDKEKSRVDLSARTPGASHELT-------WDMIEQGMVLPAKVTKIND 1128

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
              V++       G V +  L + +   N    +++ + V   ++ VD +++ + L++ P 
Sbjct: 1129 RQVIVKLSESVAGPVHLPDLADDYDEAN-PLSHSKFEIVRVAVVEVDKSNKKLRLSMRPS 1187

Query: 395  LLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 445
             + N + P         + ++VGDI      V+     GL +++    V   A V I ++
Sbjct: 1188 RVLNSSLPIKDREITKNTKLQVGDII--RGFVKNVSDKGLFVNLGGDVV---ALVKIKNL 1242

Query: 446  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKP 498
            ++  ++  ++ ++    V+ RI+       LA G ++ S  + +V        T SD+K 
Sbjct: 1243 SDSYLKDWKEHFQVDQLVKGRIIS------LADGRIEMSLKQSVVEKDYVPPITISDLKE 1296

Query: 499  GMVVKGKVIAVDSFGAIVQFPGG--VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL-- 554
            G  V GKV  V+ FGA +   G   +  LC    M++  +      +  G  +  RVL  
Sbjct: 1297 GQTVTGKVRKVEEFGAFIDIDGSDRLSGLCHRSEMADRMVQDARTLYNEGDRVKARVLKV 1356

Query: 555  GVKSKRITVTHKKTLVK 571
             V++KRI +  K +  K
Sbjct: 1357 DVENKRINLGLKPSYFK 1373


>gi|348532680|ref|XP_003453834.1| PREDICTED: protein RRP5 homolog [Oreochromis niloticus]
          Length = 1805

 Score =  392 bits (1007), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 357/1444 (24%), Positives = 676/1444 (46%), Gaps = 130/1444 (9%)

Query: 54   FPRGGGHSLTQRERDEIH-AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFG 112
            FPRGG    +   +  +H  E D  F++ E+   KK K   K   +K  +   +   +  
Sbjct: 8    FPRGGTAKKSTGSKTVVHRTEADNLFQSNEQTETKKRKAGAKDDSKKLKKQKAEEKKV-- 65

Query: 113  DGISGKLP-RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALD 168
             G++   P +    + +K++  GM + G V EV + ++ + LP GL+G   +    D+  
Sbjct: 66   -GLTLNAPVKCVEILHVKDVKEGMLMLGCVKEVTDFEVTVSLPSGLQGFLSIKNICDSYT 124

Query: 169  PILDNEIEANEDN---LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL 225
             +L  ++++ +      LP +F+ G ++ C+V +LD  K+  G   I LS+   L+ K L
Sbjct: 125  KLLSEQLDSTDTEEICSLPHLFYPGMVLRCVVAKLDVTKR--GSLSIQLSINPKLVNKNL 182

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA--ENSGIDVKPGLLLQGV 283
            +   ++ GMVL+A V+S+ED+GYI+  G+     FL + +L    N+  ++K G  L   
Sbjct: 183  TPSALKTGMVLSACVESVEDYGYIIDIGVSGTKAFLSKESLKFKHNNAQELKVGQYLTSQ 242

Query: 284  VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
            V  +    +VV LS++  T+++   +  +G ++  L+PG++V   ++ + ++G++L FL+
Sbjct: 243  VEEVKNDGRVVQLSANLTTIAQTCAEPKQGWNLTTLLPGLLVKATIKEVTKHGLILDFLS 302

Query: 344  YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----N 398
             F G VD  H++         + Y +  KVNAR+L+++P +R VG++L  +L+H     +
Sbjct: 303  SFNGQVDFLHME-----PEQASSYTKGLKVNARVLYIEPQTRLVGMSLRSHLIHLETGID 357

Query: 399  RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY- 457
              P    ++G++  + K+  +    G +L++P     T A+V  + + E      E +  
Sbjct: 358  PVPAGGERIGEVVKECKMTAMHHLSGGVLELPD---KTLAFVHRNHLKESNEEANENRVF 414

Query: 458  --KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
               E +C   RIL F  +E +    L+ S      + + D++ G VV+G V  + S G +
Sbjct: 415  AQPEHTC---RILDFSPMEQIHFATLRRSVIGKPFYRYHDLQAGQVVEGTVSVLLSHGMV 471

Query: 516  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 573
            V     +K L P  H+S+  +  P KK+  G ++  RVL V  ++K++ +T KKTLV+S 
Sbjct: 472  VHLSDHIKGLVPRTHLSDIVLQNPEKKYMEGMKVKCRVLSVDAENKKLYLTRKKTLVESS 531

Query: 574  LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
            L +  SY +     ++HG+I  ++  GC VRFYNGV+G  P SEL  +P   P  +++VG
Sbjct: 532  LPLFLSYNDTRPGRVSHGYIVSVKDFGCIVRFYNGVKGLVPLSELSSEPIVRPGDIFYVG 591

Query: 634  QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-----VKLGSLVSGVVDVVTPNAVVVY 688
            QVVK +++   P   ++ LSF     + +E+        ++G  +   V   + N + V 
Sbjct: 592  QVVKAKVLQCDPEKGKMVLSFKAVGEKENEETEKPEFDCEVGKRLDAKVLKKSLNGLEVA 651

Query: 689  VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS 748
            ++     +  +P  HL+DH+ +  ++   ++ G    +L+       NL L+ K ++  S
Sbjct: 652  ILPDEI-RAVLPMIHLSDHMSNCPLLWESLQEGDIISKLICSSKNKQNLTLTKKPTVRWS 710

Query: 749  AQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
             ++  +  D S I     + G++ NI+  G FV F   L G AP+S   D    D + ++
Sbjct: 711  LEEGVVAKDFSEITVGLQLVGWIKNIMSYGVFVEFPYGLVGLAPKSAMTDKFIRDATNSF 770

Query: 807  YVGQSVRSNILDVNSETGR--ITLSLKQSCCSSTDASF-----MQEHFLLEEKIAMLQSS 859
             VGQ+V + + +++ E  R  +TL + +      DA       +QE   + E + +    
Sbjct: 771  QVGQTVIAKVTNLDEEKRRFLVTLKISEVISPQGDAQTRLINGLQERRAVTEMLVL---- 826

Query: 860  KHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSV 919
            K N    + +    +G  ++  V   ND G     +           H + G  +  G  
Sbjct: 827  KDNSELQQQLAALSVGQKLKLTVDTVNDTGARFKSDGLIGATILANKHHMMGVKLTEGQK 886

Query: 920  IQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 979
            + A +L V      V +S+ +  +             KKK   E  K         A+V+
Sbjct: 887  VGAVVLHVDMLSACVHVSILSKLMG------------KKKSLAEGLKH-------TAMVQ 927

Query: 980  IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLL 1038
             + +++ V+SL +        + S  N     + + L  G ++ A V+  PS      L 
Sbjct: 928  YIDKDFAVISLGDTAQLTVIQTYSHLNEIFLSESEKLKVGMTLSAEVIE-PSCQELQGLP 986

Query: 1039 LLL--KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
            L+   +++ E + ++S+    +  +  G ++Q  +  +KP  +++    G  G +H++EV
Sbjct: 987  LVSWERSMPERKRTASENQTGRKGHCFGEILQGTVRTVKPTCIQVTLEDGSSGSVHVSEV 1046

Query: 1097 NDDKSNVVENL-FSNFKIGQTVTARII----AKSNK--PDMKKSFLW---ELSIKPSMLT 1146
             +     + +   S+ K+G  VTAR+I    A S++  P     F +   EL++ PS L 
Sbjct: 1047 VEPAEVRLGSFPTSSVKVGSVVTARVIGGREASSHRFLPFSHPKFTYTISELTLIPSKLN 1106

Query: 1147 VSEIGSKLLFEE--CDVSIGQRVTGYVYKVDNEWALLTISR--HLKAQLFILDSAYEPSE 1202
             S     +  +E       G+ +T +V K +++   L ++    +   + +L    +P +
Sbjct: 1107 ESVDFKPVTAKEKLSSYKAGEEITCFVSKFNSDRKSLEVTTDPSVTGTVELLAMTTDPKD 1166

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDI 1262
            +   ++   +G+AV   V+ ++       L L     G+               + +G I
Sbjct: 1167 IGHPEKLHKLGQAVRARVVEVSFTPHRFVLSL----TGVHK-------------LEKGSI 1209

Query: 1263 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRT 1322
              G ++ I     GL+V++     G V  T+L +    +PL+ Y++ QF++C +L+    
Sbjct: 1210 TLGIVTNIQPQT-GLLVKLPFGGMGTVAVTDLADAYRPNPLAVYNKDQFLRCYLLDNEND 1268

Query: 1323 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE--KIEDLSPNMIVQGYVKNVTS 1380
                   +LSLR           S L+ +   P K  E   +  L    I++GYVK+V  
Sbjct: 1269 -----KWQLSLR----------PSRLNPEKAKPAKDPEVLSVNKLKAGQIIRGYVKSVGE 1313

Query: 1381 KGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437
            +G FI LSR +  +  L   +  +V++ +   +  P   L+  ++LS++   + + ++L 
Sbjct: 1314 QGVFIRLSRSIIGRAELQQTTKYFVKNHKIVSEHLPPNTLLTTKILSIDEEEEFINLSLL 1373

Query: 1438 TSDS 1441
              D+
Sbjct: 1374 PEDT 1377



 Score =  263 bits (673), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 137/307 (44%), Positives = 209/307 (68%), Gaps = 4/307 (1%)

Query: 1617 GHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSS 1675
            G   E  T  +K +RH +++EK+E E+ +   E  L++ +  P+    FERL+ +SPNSS
Sbjct: 1494 GEDQEGSTKPQKKSRHEQEQEKKEAEKALIQREAELMDPNLRPKDAAAFERLLLASPNSS 1553

Query: 1676 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735
             +W+++MA  L    +E+ARS+AERAL+TI+ REE EKLN+WVA  NLEN YG   EE++
Sbjct: 1554 LLWLQFMAHHLQATQIEQARSVAERALKTISFREEQEKLNVWVALLNLENMYGT--EESL 1611

Query: 1736 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1795
             KVF+RA+Q+C+P  V+  L  +Y ++ + K A+ L   M+K+F+ + +VW      LL+
Sbjct: 1612 KKVFERAVQFCEPMPVYQKLAEIYAKSNKIKEAEGLYKTMVKRFRQNKEVWFSYGTFLLQ 1671

Query: 1796 QQQEGVQA-VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1854
            Q Q  V + ++QRAL SLP  + +  I++ A LEF+ G  +RGR+MF+ +L+ YPKRTDL
Sbjct: 1672 QGQSDVASTLLQRALKSLPPKESVDVIAKFAQLEFRYGDVERGRNMFDKVLTTYPKRTDL 1731

Query: 1855 WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1914
            WS+++D  ++ G    IR LF+R I LS+  KK+KF FK+YLEYEK+ G  + ++ VK+K
Sbjct: 1732 WSVFIDLMVKHGSQKEIRALFDRVIHLSVSVKKIKFFFKRYLEYEKTHGTPQSVQAVKEK 1791

Query: 1915 AMEYVES 1921
            A+E+VE+
Sbjct: 1792 AIEFVEA 1798



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 113/512 (22%), Positives = 214/512 (41%), Gaps = 71/512 (13%)

Query: 1035 GRLLLL---LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI 1091
            GR++ L   L  I++T  +  K+    ++   G LV+A I E+    L L F   F+G++
Sbjct: 250  GRVVQLSANLTTIAQT-CAEPKQGWNLTTLLPGLLVKATIKEVTKHGLILDFLSSFNGQV 308

Query: 1092 HITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL------WELSIKPSML 1145
                +  +++       S++  G  V AR++    +  +    L       E  I P   
Sbjct: 309  DFLHMEPEQA-------SSYTKGLKVNARVLYIEPQTRLVGMSLRSHLIHLETGIDPVPA 361

Query: 1146 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205
                IG   + +EC ++    ++G V ++ ++        HLK      +S  E +E + 
Sbjct: 362  GGERIGE--VVKECKMTAMHHLSGGVLELPDKTLAFVHRNHLK------ESNEEANENRV 413

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1265
            F +  H     T  +L  +  +++    LR     +  K     +D     +  G +V G
Sbjct: 414  FAQPEH-----TCRILDFSPMEQIHFATLR---RSVIGKPFYRYHD-----LQAGQVVEG 460

Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRG 1325
             +S +LS   G+VV +  H+ G V  T L +I + +P   Y EG  VKC+VL +    + 
Sbjct: 461  TVSVLLSH--GMVVHLSDHIKGLVPRTHLSDIVLQNPEKKYMEGMKVKCRVLSVDAENKK 518

Query: 1326 TFHV--ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1383
             +    +  + SSL    S N                   D  P  +  GY+ +V   GC
Sbjct: 519  LYLTRKKTLVESSLPLFLSYN-------------------DTRPGRVSHGYIVSVKDFGC 559

Query: 1384 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1443
             +     +   V LS LS   +  P   F +G++V  +VL  +P   ++ ++ K    + 
Sbjct: 560  IVRFYNGVKGLVPLSELSSEPIVRPGDIFYVGQVVKAKVLQCDPEKGKMVLSFKAVGEKE 619

Query: 1444 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI---ENTNLVGLCHVSELSEDHVDNIE 1500
              ++E     +  VG  +  ++ +    GL + I   E   ++ + H+S    DH+ N  
Sbjct: 620  NEETEKPEF-DCEVGKRLDAKVLKKSLNGLEVAILPDEIRAVLPMIHLS----DHMSNCP 674

Query: 1501 TIYRAGEKVKV--KILKVDKEKRRISLGMKSS 1530
             ++ + ++  +  K++   K K+ ++L  K +
Sbjct: 675  LLWESLQEGDIISKLICSSKNKQNLTLTKKPT 706



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
            + S + VG  ++G IK + SYG+F+      LVGL   S +++  + +    ++ G+ V 
Sbjct: 719  DFSEITVGLQLVGWIKNIMSYGVFVEFP-YGLVGLAPKSAMTDKFIRDATNSFQVGQTVI 777

Query: 1511 VKILKVDKEKRRISLGMKSS 1530
             K+  +D+EKRR  + +K S
Sbjct: 778  AKVTNLDEEKRRFLVTLKIS 797


>gi|363754491|ref|XP_003647461.1| hypothetical protein Ecym_6262 [Eremothecium cymbalariae DBVPG#7215]
 gi|356891098|gb|AET40644.1| hypothetical protein Ecym_6262 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1714

 Score =  389 bits (998), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 354/1196 (29%), Positives = 573/1196 (47%), Gaps = 153/1196 (12%)

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            GC V  LG L  F P S+  +           +GQ+V   +L+ N +  RI +S K    
Sbjct: 612  GCIVSLLGNLKAFLPNSEISEAFVKKAQDHLRLGQTVMIKVLECNEDRQRIIVSCK---V 668

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 893
            SST AS  QE     EK+ + +S          ++  I+    +  V ESND G+  V+ 
Sbjct: 669  SSTAASQQQEAI---EKMIVGRS---------IIDVTIVEKTKDSIVAESNDAGLRGVIF 716

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
                SD    I  ++     ++ G+ ++  + D     R+ +++ K   I   R+A  + 
Sbjct: 717  VGHLSD--SRIEQNRALLKKLKIGTGLRGLVTDKDTKTRVFNMTCKKSLI---RDAEEDL 771

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVE-----IVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
                 ++ +   K+  +H  V +I E          ++ L LP Y        +S     
Sbjct: 772  LPLNFEKIKNKDKNSPMHGYVKSISEKGIFVAFHGKFVGLVLPSYATESRDVGIS----- 826

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKK---------- 1058
                K+F   QSV  TV  L       R LL +K   E + S++K   K           
Sbjct: 827  ----KKFYINQSV--TVYLLRIDEENERFLLTMK---EPKLSTNKEEPKVVGALNPVDQN 877

Query: 1059 ----SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN---F 1111
                S Y +G L +A I  IK  +L +      HGRI ++E+ D+   + EN+ +    F
Sbjct: 878  IKYLSEYTIGRLTKARINSIKKTQLNVVLADNLHGRIDVSEIFDNFEEI-ENISTPLVPF 936

Query: 1112 KIGQTVTARII----AKSNK--PDMKKS---FLWELSIKPSMLTVSEIGSKLLFEECDVS 1162
            K G  +  R+I    AK++K  P   ++    + ELS K S+L+        +    DV 
Sbjct: 937  KKGDIIDVRVIGFHDAKTHKFLPVSHRNGINTVLELSAKKSVLS----NEHRILSFKDVK 992

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ-EFQRRFHIGKAVTGHVL 1221
            +G  + G+V     ++  LTIS+ LKA++   + + E    + E    F +G A+   V 
Sbjct: 993  VGDSLVGFVNNFSKDFVWLTISQSLKAKIPNFELSDEGDIFKSEIDHTFPLGSALKVKVT 1052

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
            S++ E + + +  R         ++ +  D     +  G  +  R+ K+ S    L++ +
Sbjct: 1053 SLDSEHRTVNVSARS-------TSITVIKD-----VEIGSTLPARVVKVSSSY--LLLDL 1098

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYD-------EGQFVKCKVLEISRTVRGTFHVELSLR 1334
            G  + G V F       V+D L  Y        EG+        +     G   + LSLR
Sbjct: 1099 GNKVTG-VAF-------VTDALDEYSLSLETAFEGKVGSIVSATVVDCDVGNNRINLSLR 1150

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
                        D+++  D           L    +V+G++K VT KG F+ LSR + A 
Sbjct: 1151 GG-----KPKDRDITSHTD-----------LKRGDVVRGFIKTVTEKGIFVYLSRSIQAF 1194

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S L+D Y++  +K +   + +  +V++    S  + +T+K S+        +   ++
Sbjct: 1195 VPVSKLTDAYIKEWKKFYRPMQPITAKVVNCADNS-HILLTMKESEV-NGDLHILKGYND 1252

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
            + VGDI  G +K V  +G+F+ + NT N+ GL H SE+SE  V+++  ++  G+KVK  I
Sbjct: 1253 IQVGDIFEGYVKNVTDFGVFVKLGNTLNVTGLAHKSEVSEAKVEDLHNLFGEGDKVKAII 1312

Query: 1514 LKVDKEKRRISLGMKSSYFKNDADNL----QM---SSEEESDEAIEEVGSYNRSSLLENS 1566
            LK +  K++ISLG+K+SYFKN+  ++    QM     E E+DE +E V   N S      
Sbjct: 1313 LKTNPTKKQISLGLKASYFKNEVADVVEEEQMIPSDPESEADEVMEGVDYNNESENESEE 1372

Query: 1567 SVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID 1626
                + +   S DG SL  A  +  ASV      LD        G  +     +E  T  
Sbjct: 1373 QELSKKVISSSNDGLSLS-AAFDWTASV------LDQA------GEVEESSDEEEDFTSK 1419

Query: 1627 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1686
            +      K K   ++  +I           AP +  ++ERL+  +PNSS +W+ YMAF L
Sbjct: 1420 KSKRNKRKTKVSADKTIDINTR--------APESVADYERLIMGNPNSSVIWMNYMAFQL 1471

Query: 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1746
             +++V+KAR + ERAL+TIN REE EKLNIW+A  NLEN +G+  EE +  +F+RA QY 
Sbjct: 1472 QLSEVDKARELGERALKTINFREEAEKLNIWIAILNLENTFGS--EETLEGMFRRACQYM 1529

Query: 1747 DPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAV 1804
            +   +H+ L+ +Y  +E+   A+EL     KKF      +W+   + LL Q ++E   A+
Sbjct: 1530 ESFTIHMKLISIYTMSEKFDKANELYSSTAKKFGSEKVSIWVSWSEFLLVQGRKEEAHAI 1589

Query: 1805 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1864
            + +AL  LP+  HI+ + + A LEF  G  ++GRS+FEG+L++ PKR DLW++Y+DQEI+
Sbjct: 1590 LAKALNVLPKRNHIEIVRKVAQLEFSKGEPEQGRSLFEGLLADAPKRIDLWNVYIDQEIK 1649

Query: 1865 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            L D   +  LFER I+  +  K+ KF F K+L++E+S  ++   EYVK KA EYV+
Sbjct: 1650 LLDKKKVENLFERVITKKISRKQAKFFFNKWLQFEESQDDQRTAEYVKAKAAEYVQ 1705



 Score =  177 bits (449), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 311/1367 (22%), Positives = 585/1367 (42%), Gaps = 161/1367 (11%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANET---VDDLGSL 110
            FPRGG   LT  E  ++  E   +   V  G+ + +K + +  ++K N +    +  G++
Sbjct: 40   FPRGGASVLTPLELKQVANEAARD---VLFGVEESSKMEGRPKKKKKNSSGSMKEGAGNV 96

Query: 111  FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADAL 167
             G   +  +  +   ++ + ++ G  + G V  +++ D+ +     LRG   L   +D  
Sbjct: 97   KGSEDTTDIIEH---VSFRALTPGTLVLGQVCSISKMDICVAFTDNLRGYVPLTNISDRF 153

Query: 168  DPIL---DNEIEA------------------NEDNL----LPTI---FHVGQLVSCIVLQ 199
              IL   D+ +E+                  NE+N     LP +   F VGQ + C V +
Sbjct: 154  SSILEELDDAMESGSDSEDEDGEYDSSDERKNENNRPTAELPNLQNYFTVGQWLRCYVQK 213

Query: 200  ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
               LD   K+  K +I LS+    + + L  E + +   +   VKSIEDHG IL  G+ +
Sbjct: 214  NTALDPQHKK--KHRIELSIEPPKVNQ-LEDEDLSKNSTIQCSVKSIEDHGAILDLGIKN 270

Query: 257  FTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK-CVTKDLKGIS 315
             TGF+ + +   ++ + +   + L  +V+   RT  V +     D  SK C    +   S
Sbjct: 271  ITGFISKKDFPGSNEL-LAGSVFLANIVKRSGRTVTVNF-----DFASKKCKVSQIS--S 322

Query: 316  IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 375
            +D ++PG  V    Q I  +G++        G + I  LQ  F T   KN Y     +  
Sbjct: 323  VDAVIPGQTVDFLCQKITNHGIVGKAFGLVDGFLGISQLQ-CFSTDIIKNKYPVGNNIKC 381

Query: 376  RILFVDPTSRAVGLTLNPYLLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLD--IPST 432
            RI+    T        N  +L +  P  HV  + D   + + ++    +G LLD  +  T
Sbjct: 382  RIIATLTTKNG-----NKTILVSTLP--HVLSLNDTLLEHEALQA-FSVGYLLDSCMVET 433

Query: 433  PVSTPAYVTISD--VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
                  Y+ +SD  + +  + K+      G+ ++ RI+G+  ++            E   
Sbjct: 434  RDQQYFYIKLSDDRLGQVHISKIGDVLPAGN-MKARIIGYNTIDAYYQLTTDPKMLEVDY 492

Query: 491  FTHSDVKPG-MVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAE 548
                D+  G ++ K ++ +V   G  +   GG  KA  P  H+S+  +V P +KFK+G++
Sbjct: 493  LRSLDIPIGKILTKCEITSVSDKGIELNLYGGQFKAFVPPLHISDVRLVYPERKFKIGSQ 552

Query: 549  LVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYA-----EATDRLITHGWITKIEKH 599
            +  RVL V  K RI  T KK+LV    S + ++SS+      EA DR  T G +   +  
Sbjct: 553  VKARVLNVDHKGRIYATLKKSLVSYDDSSIQLISSFENVKNLEADDRK-TLGTVESFKPG 611

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            GC V     ++ F P SE+      +      +GQ V  +++      +RI +S  +  T
Sbjct: 612  GCIVSLLGNLKAFLPNSEISEAFVKKAQDHLRLGQTVMIKVLECNEDRQRIIVSCKVSST 671

Query: 660  RVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHAT 712
              S+     +  ++ G  ++DV     T +++V      G  +G I   HL+D  +E   
Sbjct: 672  AASQQQEA-IEKMIVGRSIIDVTIVEKTKDSIVAESNDAGL-RGVIFVGHLSDSRIEQNR 729

Query: 713  VMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LPSDASHIH---PNSVVH 766
             +   +K G     L+   D ++    ++ K SLI  A++  LP +   I     NS +H
Sbjct: 730  ALLKKLKIGTGLRGLVTDKDTKTRVFNMTCKKSLIRDAEEDLLPLNFEKIKNKDKNSPMH 789

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
            GYV +I E G FV F G+  G    S A + +   +SK +Y+ QSV   +L ++ E  R 
Sbjct: 790  GYVKSISEKGIFVAFHGKFVGLVLPSYATESRDVGISKKFYINQSVTVYLLRIDEENERF 849

Query: 827  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--E 884
             L++K+   S+            +E+  ++ +       +K++  + IG + + +++  +
Sbjct: 850  LLTMKEPKLSTN-----------KEEPKVVGALNPVDQNIKYLSEYTIGRLTKARINSIK 898

Query: 885  SNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLV 934
                 VV++   H         D +  I +        + G +I   ++    AK  + +
Sbjct: 899  KTQLNVVLADNLHGRIDVSEIFDNFEEIENISTPLVPFKKGDIIDVRVIGFHDAKTHKFL 958

Query: 935  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE-Y 993
             +S +   I+   E ++ +     + +  + KD+ V  ++   V    ++++ L++ +  
Sbjct: 959  PVSHRN-GINTVLELSAKKSVLSNEHRILSFKDVKVGDSLVGFVNNFSKDFVWLTISQSL 1017

Query: 994  NHSIGYASVSDYNT--QKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS 1051
               I    +SD     +      F  G ++   V +L S           + ++ +  S+
Sbjct: 1018 KAKIPNFELSDEGDIFKSEIDHTFPLGSALKVKVTSLDSEH---------RTVNVSARST 1068

Query: 1052 SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF 1111
            S    K    ++GS + A + ++    L L  G    G   +T+  D+ S  +E  F   
Sbjct: 1069 SITVIK--DVEIGSTLPARVVKVSSSYLLLDLGNKVTGVAFVTDALDEYSLSLETAFEG- 1125

Query: 1112 KIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
            K+G  V+A ++      D+  + +  LS++       +I S       D+  G  V G++
Sbjct: 1126 KVGSIVSATVV----DCDVGNNRI-NLSLRGGKPKDRDITS-----HTDLKRGDVVRGFI 1175

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
              V  +   + +SR ++A  F+  S    + ++E+++ +   + +T  V++      +L 
Sbjct: 1176 KTVTEKGIFVYLSRSIQA--FVPVSKLTDAYIKEWKKFYRPMQPITAKVVNCADNSHIL- 1232

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL--YGRV 1289
            L ++  +       +   ND     I  GDI  G +  +     G+ V++G  L   G  
Sbjct: 1233 LTMKESEVNGDLHILKGYND-----IQVGDIFEGYVKNVTD--FGVFVKLGNTLNVTGLA 1285

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            H +E+    V D  + + EG  VK  +L+ + T +    + L L++S
Sbjct: 1286 HKSEVSEAKVEDLHNLFGEGDKVKAIILKTNPTKK---QISLGLKAS 1329


>gi|354546265|emb|CCE42995.1| hypothetical protein CPAR2_206380 [Candida parapsilosis]
          Length = 1728

 Score =  388 bits (997), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 347/1260 (27%), Positives = 592/1260 (46%), Gaps = 173/1260 (13%)

Query: 738  LLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            L++ + SL+N    ++ S        S  +  V   +  G  V F G L  F P+++  +
Sbjct: 560  LVTLRKSLVNLEDDEILSSFDDAKVGSKTNAIVEKFVHGGVLVSFFGSLRAFLPKTEISE 619

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
                D SK   +GQ V   ILD+N E  R+ ++LKQS                       
Sbjct: 620  TFVDDASKYLKLGQVVNVKILDINEEQKRLVVTLKQS----------------------- 656

Query: 857  QSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 915
              S+ + S+   +   I G SV+   V E  +  V++  E  S++ G +   QL+    E
Sbjct: 657  --SQLSASQKTEIANLIPGISVVHAVVVEKKNDSVLIELE-GSNLRGVVHDGQLSDGNYE 713

Query: 916  SGSVIQAAILDVAKAERLV---DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
                +   +   +K E L+   DL  +TV         S  +A KKK+      D+  ++
Sbjct: 714  QNRALFKKLEISSKVEVLILEKDLKARTVIA---TAKKSLIEASKKKQLPTDFDDVQPNR 770

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS 1032
             +   V+ V    L ++       +  A     +  +   K+F   QS+   V+++ S +
Sbjct: 771  IIKGYVKSVTNLGLFVAFTGRLTGLILAKYVSKSAHEDLSKRFYKYQSLTCKVLSVDSEN 830

Query: 1033 TAGRLLLLLKAISETETSS-----SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 1087
               R LL +    +++  +         K    Y  G   +A I  +K  +L ++     
Sbjct: 831  K--RFLLTIANGKDSDGDNLINPVDPTKKTIEDYASGIYTKAIIKSVKGTQLNVRLADNL 888

Query: 1088 HGRIHITEV---NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD----------MKKSF 1134
            +GR+ +T+      D  N+++ L S F  G+ +  ++I   +  +            K  
Sbjct: 889  NGRVDVTQCFKSTKDIKNLLQPLSSGFHKGEELNVKVIGIHDAKNHTFLPITHNKTNKQT 948

Query: 1135 LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194
            + ELS++   +    +    L    DV  G +   +V  +D  +  ++IS  +K ++  +
Sbjct: 949  IMELSLQDPQVRKKNLSDLKL---PDVQKGDKFVAFVNNIDRGFVWVSISPSIKGRISFM 1005

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDIS 1249
            D + + S   +F+ ++ IG A+   V  ++ E + L L  R      F+D + DKT    
Sbjct: 1006 DLSDDGSIFYDFENKYPIGAALQVKVKEVDNEHQTLSLTSREQYISKFEDVVKDKTY--- 1062

Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS-GYDE 1308
                            RI K+      ++V +G  +      T+  N   SD L   +  
Sbjct: 1063 --------------PARIIKVKDSY--VLVDLGDKVIASSFITDALN-DYSDKLDHAFHV 1105

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
             ++V   VL+I         + +SLR                D D+  K +  I+DLS  
Sbjct: 1106 NEYVGATVLDIDV---DQHKISVSLR----------------DKDSMDKTINSIKDLSRG 1146

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             +V+G+VKNV+S G ++ L R + A V +S+LSD Y++  +K F   + V G++++ +  
Sbjct: 1147 DVVKGFVKNVSSNGVYVSLGRSVYALVRVSDLSDSYLKDWKKFFKPNQSVTGKIINCKE- 1205

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCH 1487
              R+ +TLK S+     ++ + +  +L VGD+  G + +   +G+F+ ++ T N+ GLCH
Sbjct: 1206 EGRILMTLKESEVNGELKT-MKSFDDLAVGDVFEGHVTKTTDFGVFVKLDGTVNVSGLCH 1264

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1547
             +E+SE+ V N+  ++  G++VKVKILK+D  K+++SLGMK+SYFK+  ++     E E 
Sbjct: 1265 HTEISENDVKNVMALFGEGDRVKVKILKIDPSKKQLSLGMKASYFKDFVED-----ESEV 1319

Query: 1548 DEAIEEVGSYNRSSLLE---------NSSVAVQDMDMESEDGGSLV----------LAQI 1588
            D  +++          E         N  V V   D E ED    V            + 
Sbjct: 1320 DVEMKDAEEEEEEEEEEEEYESEGSENDDVVV---DAEKEDKEEDVSDDDNESGEEDDEE 1376

Query: 1589 ESRASVPP--LEVNLDD------EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEE 1640
            E++A+  P  L  N  D      +Q + +N  S ++   + +K++  K +R   K E + 
Sbjct: 1377 EAQATSEPRSLSTNGFDWTASILDQTEDNNTSSDDEDFVNNSKSLKPKKSRKQTKVEDKT 1436

Query: 1641 REQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1700
             +   RA          P++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ER
Sbjct: 1437 IDLNTRA----------PQSVADFERLLIGNPNSSILWMNYMSFNLQLSEVDKARQIGER 1486

Query: 1701 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1760
            AL+TIN REE EKLNIW+A  NLEN +G   +E++  VF++A QY D   +H  L  +  
Sbjct: 1487 ALETINYREEQEKLNIWIALLNLENTFGT--DESLDAVFKKACQYMDSFTIHQKLASILI 1544

Query: 1761 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIK 1819
             +E+   A++L   M KKF  +   W+     LL Q      + V+ +AL  LP+  HI+
Sbjct: 1545 MSEKFDQANDLFKVMSKKFGQNVLTWVLYGSFLLDQDANNEARQVLAKALQVLPKRDHIE 1604

Query: 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVD------ 1869
             + + A LE+  G  ++ RS+FEG++++ PKR DLW++Y+DQEI+     GDVD      
Sbjct: 1605 VVRKFAQLEYAKGDIEQARSLFEGLIADAPKRIDLWNVYIDQEIKCGGGGGDVDEDKEKN 1664

Query: 1870 ---------LIRGLFERAI-SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
                      +  LFER I +  +  K+ KF F K+LEYE+S G+++ +  VK KA+EYV
Sbjct: 1665 KSKTASNKQQVESLFERVIENKKVSRKQAKFFFNKWLEYEESQGDDKMVGKVKAKAIEYV 1724



 Score =  193 bits (491), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 213/854 (24%), Positives = 371/854 (43%), Gaps = 91/854 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKK-----NKKKKKKTERKANETVDD 106
           FPRGG   LT  E  EI  E   D  FE   +    K     +K +KK+   K      +
Sbjct: 16  FPRGGATGLTPLEVKEISNEATKDVLFEVANQNKRAKSGSEADKPRKKQRTNKKKGPSSE 75

Query: 107 LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
           +     D    +       ++ KN+  G  ++G +  VN+ D+ + L   L G       
Sbjct: 76  VSKTGDDAEEDEKKVQIEYLSFKNLVPGSFVFGQIQAVNKLDMALALENNLVGFV----- 130

Query: 167 LDPILDNEIEANEDNL-------------------------------------LPTIFHV 189
             PI  N I A+   L                                     L +IF V
Sbjct: 131 --PI--NAISAHITGLIKKYEEESEYEGDDDDDDEEGEGGTLMSTKPEKEFPDLKSIFRV 186

Query: 190 GQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
           G  +   V++ +       K++I +S+   L    L  E +  G +++  VKSIEDHG I
Sbjct: 187 GSWLKAKVVETESS----NKKRIEVSIEPELANANLEKEDLVPGNIVSCSVKSIEDHGLI 242

Query: 250 LHFGLPSFTGFLPRNNLAENSGIDV---KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 306
           L  G+  F+ F+    L +N+ ID+   K GL+L   + S    R +    +   T +K 
Sbjct: 243 LDCGIEGFSAFVSNKEL-KNAEIDLETCKEGLVLTTTIVSKPSGRVITVKPAIASTTAKK 301

Query: 307 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 366
           +T      S+D +  G +V   V  + + G+M        GT++   LQ  F T   K+ 
Sbjct: 302 LTPITTISSVDAIQVGSVVEALVSDVTDAGIMTRVYGLVDGTLNFSDLQ-IFSTQELKHK 360

Query: 367 YNQHKKVNARILFVDPTS--RAVGLTLNPYLLHNRAPPSHVK------VGDIYDQSKVVR 418
           +     +  R++ +      R + L+L  + L      S  +      VG ++D ++V+ 
Sbjct: 361 FAIGSNIKTRVVAILQKGGVRKLVLSLVSHSLQMGNESSKTEALEAFPVGHVFDDAEVLG 420

Query: 419 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 478
            D+   + + + S   ST   +  S++ E    K    Y   S  + R++GF  ++ L  
Sbjct: 421 SDQEY-VYVKLGS---STLGQIHNSNIDES---KTLIDYSVTSKHKARVIGFNMIDNLYV 473

Query: 479 GILKASAFEGLVFTHSDVKP-GMVVKGKVIAV--DSFGAIVQFPGGVKALCPLPHMSEFE 535
              K +  + L  T  D+    ++   ++I V  DS G  V+F    +   P  HMS+ +
Sbjct: 474 LTFKPTVIDALYLTVKDIPVVTLLPSCEIIKVLPDSGGIQVKFLEEFQGFVPPNHMSDIK 533

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWIT 594
           +V P +KF+VG+++  R+L  K K   VT +K+LV      ILSS+ +A     T+  + 
Sbjct: 534 LVYPERKFRVGSKVKGRLLAHKGKTPLVTLRKSLVNLEDDEILSSFDDAKVGSKTNAIVE 593

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           K    G  V F+  ++ F P++E+      + S    +GQVV  +I+      +R+ ++ 
Sbjct: 594 KFVHGGVLVSFFGSLRAFLPKTEISETFVDDASKYLKLGQVVNVKILDINEEQKRLVVT- 652

Query: 655 MMKPTRVSEDDLVKLGSLVSGV-----VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HL 708
           + + +++S     ++ +L+ G+     V V   N  V+  +     +G +    L+D + 
Sbjct: 653 LKQSSQLSASQKTEIANLIPGISVVHAVVVEKKNDSVLIELEGSNLRGVVHDGQLSDGNY 712

Query: 709 EHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSA--QQLPSDASHIHPNSVV 765
           E    +   ++   + + L++  D ++  ++ +AK SLI ++  +QLP+D   + PN ++
Sbjct: 713 EQNRALFKKLEISSKVEVLILEKDLKARTVIATAKKSLIEASKKKQLPTDFDDVQPNRII 772

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            GYV ++   G FV F GRLTG             DLSK +Y  QS+   +L V+SE  R
Sbjct: 773 KGYVKSVTNLGLFVAFTGRLTGLILAKYVSKSAHEDLSKRFYKYQSLTCKVLSVDSENKR 832

Query: 826 ITLSLKQSCCSSTD 839
             L++     S  D
Sbjct: 833 FLLTIANGKDSDGD 846



 Score = 47.8 bits (112), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 3/161 (1%)

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            D+  G VVKG V  V S G  V     V AL  +  +S+  +    K FK    +  +++
Sbjct: 1142 DLSRGDVVKGFVKNVSSNGVYVSLGRSVYALVRVSDLSDSYLKDWKKFFKPNQSVTGKII 1201

Query: 555  GVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQG 611
              K + RI +T K++ V  +L  + S+ +     +  G +TK    G FV+      V G
Sbjct: 1202 NCKEEGRILMTLKESEVNGELKTMKSFDDLAVGDVFEGHVTKTTDFGVFVKLDGTVNVSG 1261

Query: 612  FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
                +E+  +      +++  G  VK +I+   P+ ++++L
Sbjct: 1262 LCHHTEISENDVKNVMALFGEGDRVKVKILKIDPSKKQLSL 1302


>gi|366991363|ref|XP_003675447.1| hypothetical protein NCAS_0C00900 [Naumovozyma castellii CBS 4309]
 gi|342301312|emb|CCC69080.1| hypothetical protein NCAS_0C00900 [Naumovozyma castellii CBS 4309]
          Length = 1722

 Score =  388 bits (997), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 346/1193 (29%), Positives = 575/1193 (48%), Gaps = 147/1193 (12%)

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            +GC V F G +T F P ++  +       +   +GQ++   +L ++ E  R+ ++    C
Sbjct: 619  SGCIVAFFGGMTAFLPNAEISEVFVRKPEEHLRLGQTIVVKLLKIDQENARMLVT----C 674

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
              S D                 Q+ K   +  K + G    S+++  V E     V+V  
Sbjct: 675  KISND-----------------QAEKKKETIEKLIPG---RSMVKVNVVEKTKDSVIVEL 714

Query: 895  EEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFID 944
             E S + G I    L+ A +E           GS ++  ++D     ++ +LSLK   I 
Sbjct: 715  PETS-LRGVIYVGHLSDARIEQNRAAIKKIAIGSELKGLVIDKDARTQVFNLSLKQSLIK 773

Query: 945  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN--YLVLSLPEYNHSIGYASV 1002
              +   S       K K + +   G  ++++     V  N  ++ L LP Y        +
Sbjct: 774  DAKNEVSPLTYADIKSKSKTTPLHGYIKSISNKGLFVAFNGKFVGLVLPSYAVESRDVDI 833

Query: 1003 SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS----------- 1051
            S         K F   QSV A +  L S     R LL L+  S  + SS           
Sbjct: 834  S---------KTFYINQSVTAYL--LRSDDDNERFLLTLRTPSTKDDSSKVTGTETLKPI 882

Query: 1052 SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFS 1109
                K    +  G +V+ +I  IK  +L +      HGRI I EV D  S++    +   
Sbjct: 883  DPAMKDLKDFTTGKVVKVQIKGIKKNQLNVVLADNLHGRIDIAEVFDSFSDIKNATHPLI 942

Query: 1110 NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
            +FK G  + A+II   +    +         K  + ELS+KPS +   +I +       D
Sbjct: 943  DFKKGNIIDAKIIGTHDIKSHRFLPISHHAVKGSVLELSLKPSQMRSKDIKT---LSISD 999

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGH 1219
            V++G  +TG+V    +    LT+S  LKA++ + D A +  +  E  +  F +G A+   
Sbjct: 1000 VAVGDELTGFVNNYGSNTLWLTVSPTLKAKISLFDLAEDGLKSSEKVEDNFPLGCALPVK 1059

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            V SI+ E  ++ +  R           +IS ++++     GD V  RI KI      +++
Sbjct: 1060 VTSIDTEHGVVNVTGRSH--------TEISFESLKV----GDNVPSRIIKIADSY--VLL 1105

Query: 1280 QIGPHLYGRVHFTE-LKNICVSDPL-SGYD--EGQFVKCKVLEISRTVRGTFHVELSLRS 1335
             +G  ++G    T+ L +  V  PL   Y   E   V  K++ I    +    V LSLR+
Sbjct: 1106 DLGNKIHGIAFITDALDDFSV--PLKEAYKGMENDIVSAKIVSIDAENK---KVNLSLRT 1160

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
                  S +S                  D+S   +V G VK+++ KG F+ LSR ++A V
Sbjct: 1161 ESAKTPSISSH----------------TDISQGDVVHGLVKSISDKGIFVYLSRSINAFV 1204

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1455
             +S LSD Y++  +K F   + V G+V++ E  S R+ +TL+ S+        + N  ++
Sbjct: 1205 PVSKLSDTYLKDWKKFFKPMQYVIGKVVNAEEDS-RILLTLRESEV-NGDLKILKNYDDI 1262

Query: 1456 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
             V +I  G +K V  +G+F+ ++NT N+ GL H SE+++   +++ +++  G++VK  +L
Sbjct: 1263 KVNEIYNGSVKNVTDFGVFVKLDNTVNVTGLAHNSEIADQKPEDLASLFGVGDRVKAYVL 1322

Query: 1515 KVDKEKRRISLGMKSSYFKNDADNL---QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQ 1571
            KV+ EK+++SL +K+S F N  ++    + + + + DE +E V   N  S  EN +  + 
Sbjct: 1323 KVNPEKKQLSLSLKASRFGNTNESKVEEKETVDADGDEIMEAVDYNNAPSDNENETEEIL 1382

Query: 1572 DMDME---SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEK 1628
            +   +   S DG SL     +  AS+      LD  Q +  +   ++   T        K
Sbjct: 1383 ETVSKPKISTDGLSLSTG-FDWTASI------LDQAQAEESSEEDEDFTET--------K 1427

Query: 1629 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1688
             NRH K+K+    ++ I       +   AP +  +FERL+  +PNSS +W+ YMAF L +
Sbjct: 1428 RNRHKKRKQTIVEDKTID------INTRAPESVADFERLIIGNPNSSVIWMNYMAFQLQL 1481

Query: 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748
            +++EKAR +AERAL+TIN REE+EK NIW+A  NLEN +G+  +E +  VF+RA QY D 
Sbjct: 1482 SEIEKARELAERALKTINFREESEKQNIWMAMLNLENTFGS--DETLEDVFKRACQYMDS 1539

Query: 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQ 1806
              +H  LL +Y+ + +   A EL     KKF   +  +W+     L    + +  + ++ 
Sbjct: 1540 FTMHNRLLSIYQMSGKIDKAAELFKITAKKFGSENVSIWVSWGDFLTSHGKAQEARGILS 1599

Query: 1807 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866
             AL +LP+  HI+ + + A LEF  G  + GRS+FEG++++ PKR D+W++YLDQEI+  
Sbjct: 1600 NALKALPKRDHIEVVRKFAQLEFAKGDPEGGRSLFEGLIADAPKRIDIWNVYLDQEIKAN 1659

Query: 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
            +   +  LFER +S  +  K+ KF F K+LE+E+S  + + +EYVK KA EYV
Sbjct: 1660 EKKKVEDLFERVVSRKITRKQAKFFFNKWLEFEESQNDNKVMEYVKAKATEYV 1712



 Score =  175 bits (443), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 310/1339 (23%), Positives = 563/1339 (42%), Gaps = 193/1339 (14%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL-------------- 171
            +  K +  G  + G ++E+++ D+ I    GL G         P +              
Sbjct: 111  VNFKTLKIGSLVLGQISEISKTDMCISFTDGLSGYVNLTHISAPFMTILEELDDDMDDDD 170

Query: 172  -------DNEIEANEDNL-----------LPTI---FHVGQLVSCIVLQ---LDDDKKEI 207
                   D E ++++D             LP++   F VGQ + C V+    L    K+ 
Sbjct: 171  ELEKKKTDEEYDSSDDEEEKEKATKDSIGLPSLENYFKVGQWLRCSVISNTALLPKDKKN 230

Query: 208  GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA 267
             K+KI LS+  S++   L+ E +     +   VKSIEDHG +L  G+  FTGF+ + +  
Sbjct: 231  KKKKIELSIEPSVV-NTLTEEDIVRSASVQCAVKSIEDHGAMLDIGIDGFTGFISKKDYP 289

Query: 268  ENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVS 326
            E   +   PG +  G V +  DRT  +    SD       ++      S+D +VPG +V 
Sbjct: 290  EFEKL--LPGAVFLGNVTKKSDRTVTINLDFSDKKAKITHIS------SVDAVVPGQVVD 341

Query: 327  TRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA 386
               Q+I  NG++          +   HL+  F     K+++     +  RI+ V      
Sbjct: 342  LLCQTITNNGIVGKTFGLVPSFISTAHLR-VFKEEELKHNFAVGSNIPCRIIAV-----L 395

Query: 387  VGLTLNPYLLHNRAPPSHVK-----VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT 441
            +    +  LL +  P  H+K     +G++ + +        +G L+D  +       Y+ 
Sbjct: 396  INKENDKTLLLSTLP--HIKSLKNVLGEVENLTAF-----PIGHLIDSCTVKGRDSDYLY 448

Query: 442  IS-------DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494
            ++       +V    + +LEK  K    ++ R+LGF  ++ L          +       
Sbjct: 449  LAMDDDRVGEVHSSRIGELEKFDK----LKARVLGFNSIDNLYELSTDPEILKLKYLRSK 504

Query: 495  DVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
            D+  G V+   ++ AV S G  ++ F G  KA+ P  H+S+  +V P +KFK+G+++  R
Sbjct: 505  DIPIGEVLPNCEITAVSSKGIELKIFNGQFKAIVPPMHISDTRLVYPERKFKIGSKVKGR 564

Query: 553  VLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD----RLITHGWITKIEKHGCFVR 604
            VL + ++  I VT KKTLV      + +LS++A A +       T   +T     GC V 
Sbjct: 565  VLNINNRGLIYVTLKKTLVNIEDDDIQLLSNFAIAKEIQEKNQKTVATVTAFRPSGCIVA 624

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
            F+ G+  F P +E+      +P     +GQ +  +++     + R     M+   ++S D
Sbjct: 625  FFGGMTAFLPNAEISEVFVRKPEEHLRLGQTIVVKLLKIDQENAR-----MLVTCKISND 679

Query: 665  DLVK----LGSLVSG----VVDVV--TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATV 713
               K    +  L+ G     V+VV  T ++V+V  + +   +G I   HL+D  +E    
Sbjct: 680  QAEKKKETIEKLIPGRSMVKVNVVEKTKDSVIVE-LPETSLRGVIYVGHLSDARIEQNRA 738

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQLPS-----DASHIHPNSVVHG 767
                I  G E   L++  +  + +  LS K SLI  A+   S     D       + +HG
Sbjct: 739  AIKKIAIGSELKGLVIDKDARTQVFNLSLKQSLIKDAKNEVSPLTYADIKSKSKTTPLHG 798

Query: 768  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
            Y+ +I   G FV F G+  G    S AV+ +  D+SKT+Y+ QSV + +L  + +  R  
Sbjct: 799  YIKSISNKGLFVAFNGKFVGLVLPSYAVESRDVDISKTFYINQSVTAYLLRSDDDNERFL 858

Query: 828  LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH--ES 885
            L+L+ +  +  D+S          K+   ++ K     +K ++ F  G V++ ++   + 
Sbjct: 859  LTLR-TPSTKDDSS----------KVTGTETLKPIDPAMKDLKDFTTGKVVKVQIKGIKK 907

Query: 886  NDFGVVVSFEEHSDV---YGFITHHQLAGAT-----VESGSVIQAAILDV--AKAERLVD 935
            N   VV++   H  +     F +   +  AT      + G++I A I+     K+ R + 
Sbjct: 908  NQLNVVLADNLHGRIDIAEVFDSFSDIKNATHPLIDFKKGNIIDAKIIGTHDIKSHRFLP 967

Query: 936  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYN 994
            +S   V       +    Q + K  K  +  D+ V   +   V     N L L++ P   
Sbjct: 968  ISHHAVKGSVLELSLKPSQMRSKDIKTLSISDVAVGDELTGFVNNYGSNTLWLTVSPTLK 1027

Query: 995  HSIGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSS----STAGRLLLLLKAISETE 1048
              I    +++    + +  +  F  G ++   V ++ +     +  GR        S TE
Sbjct: 1028 AKISLFDLAEDGLKSSEKVEDNFPLGCALPVKVTSIDTEHGVVNVTGR--------SHTE 1079

Query: 1049 TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 1108
             S         S  VG  V + I +I    + L  G   HG   IT+  DD S  ++  +
Sbjct: 1080 ISF-------ESLKVGDNVPSRIIKIADSYVLLDLGNKIHGIAFITDALDDFSVPLKEAY 1132

Query: 1109 SNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVT 1168
               +    V+A+I+  S   + KK     LS++        I S       D+S G  V 
Sbjct: 1133 KGME-NDIVSAKIV--SIDAENKKV---NLSLRTESAKTPSISS-----HTDISQGDVVH 1181

Query: 1169 GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1228
            G V  + ++   + +SR + A  F+  S    + L+++++ F   + V G V++  ++ +
Sbjct: 1182 GLVKSISDKGIFVYLSRSINA--FVPVSKLSDTYLKDWKKFFKPMQYVIGKVVNAEEDSR 1239

Query: 1229 LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG------ 1282
            +L L LR  +           N +++   +  DI   ++++I +G    V   G      
Sbjct: 1240 IL-LTLRESE----------VNGDLKILKNYDDI---KVNEIYNGSVKNVTDFGVFVKLD 1285

Query: 1283 --PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1340
               ++ G  H +E+ +    D  S +  G  VK  VL+++   +    + LSL++S  G 
Sbjct: 1286 NTVNVTGLAHNSEIADQKPEDLASLFGVGDRVKAYVLKVNPEKK---QLSLSLKASRFGN 1342

Query: 1341 SSTNSSDLSTDVDTPGKHL 1359
            ++ +  +    VD  G  +
Sbjct: 1343 TNESKVEEKETVDADGDEI 1361


>gi|395502216|ref|XP_003755479.1| PREDICTED: protein RRP5 homolog [Sarcophilus harrisii]
          Length = 1865

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 371/1391 (26%), Positives = 637/1391 (45%), Gaps = 147/1391 (10%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--D 180
            ++++ ++ GM+L G V E+N  +LVI LP GL G  +A   +DA    L  +++  E  +
Sbjct: 75   LSIEALTEGMRLLGCVKEINNLELVISLPNGLWGYVQATNISDAYTKKLSEQLDQEEPLE 134

Query: 181  NLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 238
            +L P   +F  G LV C+V  +    K   K+ + LSL    + + LS  +++ GM+LT 
Sbjct: 135  DLAPLSELFPPGLLVRCVVSSITSASK---KKSVKLSLNPKDVNRVLSPASLKPGMLLTG 191

Query: 239  YVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRKV 293
             V S+EDHGY++  G+     FLP     E     N G  ++ G  L  ++  +      
Sbjct: 192  TVHSVEDHGYLVDIGVMGTKAFLPWQKEQEYVKQKNKGTKLRVGQYLNCLIEEVKGNGGS 251

Query: 294  VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
            V LS+    VS  +  + +  ++D L+PG++V  +VQ +  +G+ LSF + FTG VD  H
Sbjct: 252  VLLSTIQSVVSAAIATEEQNWTLDNLLPGLVVKAQVQKVTPHGLTLSFFSSFTGLVDFMH 311

Query: 354  LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS---HVKVGDI 410
            L      +     Y Q + V A IL V P ++ V LTL    L    P +   H  +G +
Sbjct: 312  LD-----SKKAGHYFQTQMVRACILSVHPRTKCVRLTLRSSFLQAGRPITRLCHNLIGAV 366

Query: 411  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
             +   V       G    +    +   AY  I  +++ E     +K+K G+  + R++ +
Sbjct: 367  LNDVPVQGFFAKAGATFRLKDGSL---AYARIMHLSQTEKSFKPEKFKPGNMHKCRVIDY 423

Query: 471  RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
              ++ LA   LK S  E     + D+ PG VVK KV A+ S+G IV+    +K L P  H
Sbjct: 424  SPMDDLALLSLKTSIIEAPFLRYHDLHPGQVVKAKVFALRSYGMIVKVTEQIKGLVPTLH 483

Query: 531  MSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
            +++ +I  P KK+++  E+  RVL    ++K++ +T KKTLV+S L  L+SY +A   L 
Sbjct: 484  LADVQIRNPQKKYRLQDEVKCRVLTCDPENKKLLMTLKKTLVESNLPALTSYKQAKPELQ 543

Query: 589  THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            THG+I+ I+  GC V+FYN V+G  P+ ELG  P   P  +++VGQVVK  +++S P   
Sbjct: 544  THGFISSIKDSGCVVKFYNDVRGLVPQRELGAQPISTPGEVFYVGQVVKVTVLNSEPEQE 603

Query: 649  RINLSFMM-------KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
            R+ LSF +        P +  +   +K+G LV   V   T   + V ++     +  +PT
Sbjct: 604  RMLLSFRLLSDKETEGPAQSQKKATIKVGQLVDVKVKKKTEKGLEVSILPNNI-RALLPT 662

Query: 702  EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHI 759
             HL+D + ++ ++ S ++ G    ++L L +   +++L  K +LI++ +  Q P   S  
Sbjct: 663  THLSDSVNNSQLLYSWLRAGDVLHRVLCLSHSDGHIILCRKPALISAVESGQDPKVFSEF 722

Query: 760  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
             P  ++ G+V  I   G FV+F   L+G AP+S   D     +S  +  GQ+V + + +V
Sbjct: 723  QPGMLLTGFVKTIKAYGVFVQFPSGLSGLAPKSALSDKFVTTVSDHFVEGQTVVAKVTNV 782

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFL---LEE--KIAMLQSSKHNGSELKWVE---G 871
              E  R+ LSL+ S     D +      L   LEE   +  L SS+ +       E   G
Sbjct: 783  YEEKERMLLSLRLSDVCQEDTAVSSLALLSQWLEELQGVRSLMSSRDSMLTQTLAEITPG 842

Query: 872  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI----THHQLAGATVESGSVIQAAILDV 927
             ++  V++     S+D  ++ S      V G +     +HQ  G  ++ G   +A +L V
Sbjct: 843  LLMDLVVQDM---SSDGSLMFS---SGSVPGLVLKASRYHQ-GGKVMDPGQRTKAVVLHV 895

Query: 928  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLV 987
               +  V +SL+   ++R      ++Q +K    R             A++E +++ + +
Sbjct: 896  DTLKSEVHVSLRQELVNR-----KSKQLKKNTEHR-------------AVIEHLEKTFAI 937

Query: 988  LSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVM-ALPS---------SSTAGR 1036
             SL E    + +   S  N T +F  ++   GQ V   +  A PS         SS   R
Sbjct: 938  GSLMETGQLVAFPVTSHLNDTFRFDSEKLQVGQRVSLIIKSAKPSDIGLFLAVESSVKKR 997

Query: 1037 LLLLLKAISET---ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
               L  A  E    E        +K +  +G +V   +  +K   + +    G  G IH 
Sbjct: 998  TPALPLADPEPAGEEPGVMSSLLEKPTLPIGEMVTGTVKSVKATHVVVTLENGLVGCIHA 1057

Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSK 1153
            +++ DD     +   +  K+G+ VTAR+I +      K      +S   S  TVSE+  +
Sbjct: 1058 SQILDDVPLGTQPT-AKLKVGKPVTARVIGQRTLLTHKT---LPISHPSSAQTVSELSIR 1113

Query: 1154 LLFEECDVSI------------------GQRVTGYV--YKVDNEWALLTISRHLKAQLFI 1193
                E D+SI                  GQ V  ++  + V  +W  + I+  ++ ++  
Sbjct: 1114 SSELEKDISIDPSTHCSSPTEKLKQYLPGQTVICFMRKFNVIKKWLEVEITPDIRGRIPQ 1173

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
            L ++     L+  +++F IG+A++  V+     K  L L L             I    +
Sbjct: 1174 LLTSLSFKVLKHPEKKFKIGQALSATVVGPESSKGFLTLSL-------------IGPHRL 1220

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
            +    EG++  GR+ K++    GL V       G+V    L +  +  PL G+   + V+
Sbjct: 1221 E----EGEVAMGRVVKVIPK-EGLQVLFPFGTIGKVSIFHLSDSYLEAPLEGFHPEKIVR 1275

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            C VL     V     + LSLR      S TN   +   ++ P   +  I+++     ++G
Sbjct: 1276 CCVLSTKDPV-----LTLSLRQ-----SRTNPR-MKNKIEDP--EVNSIKNIKEGQHLRG 1322

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSK 1430
            YV+ V   G    +   L  +V   +++  ++          P GKL++ +VL +    K
Sbjct: 1323 YVEAVKKLGVHFRIGPTLVGRVKYRHVTKYFLSDKTLYRTYLPEGKLLSAKVLRLNRKQK 1382

Query: 1431 RVEVTLKTSDS 1441
             V ++    D+
Sbjct: 1383 LVYLSFLPKDT 1393



 Score =  280 bits (716), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 137/290 (47%), Positives = 201/290 (69%), Gaps = 6/290 (2%)

Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            ++ E+E+   E  L++ +  P T D+F+RLV SSPNSS +W++YMAF L   ++EKAR++
Sbjct: 1576 QQAEKELTRIETALMDPNWQPETADDFDRLVLSSPNSSILWLRYMAFHLHATEIEKARAV 1635

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL++I+ REE EKLN+WVA  NLEN YG+  +E + KVF+RA+QYC+P KV   L  
Sbjct: 1636 AERALKSISFREEQEKLNVWVALMNLENMYGS--KETLSKVFERAVQYCEPLKVFFQLAD 1693

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1816
            +Y ++E+ + A+E+  +M+K+F+    VW++    LL++ + E    ++ RA   LP+ +
Sbjct: 1694 IYSKSEKYQAAEEVYNQMLKRFRQEKTVWVKYGSFLLQRGKAEACHDLLPRAFSCLPQKE 1753

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
            H+  IS+ A LEF  G  +RG++MFE  L+ YPKRTD+WSIY+D  I+ G    +R  FE
Sbjct: 1754 HVDVISKFAQLEFYQGDGERGKAMFESTLNSYPKRTDVWSIYIDMLIKFGSQKEVRDAFE 1813

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES--TLA 1924
            R + LSL PK+MKF FK+YL+YEK  G  E ++ VK+KA+ YVES  TLA
Sbjct: 1814 RVVHLSLSPKRMKFFFKRYLDYEKQHGTAETVQAVKEKALNYVESRNTLA 1863



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 156/707 (22%), Positives = 277/707 (39%), Gaps = 108/707 (15%)

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
            C   D S M +  LL  K +++++      +L        G V++ KV     +G++V  
Sbjct: 418  CRVIDYSPMDDLALLSLKTSIIEAPFLRYHDLH------PGQVVKAKVFALRSYGMIVKV 471

Query: 895  EEHSDVYGFITHHQLAGATVESGSV-------IQAAILDVAKAERLVDLSLKTVFIDRFR 947
             E   + G +    LA   + +          ++  +L      + + ++LK   ++   
Sbjct: 472  TEQ--IKGLVPTLHLADVQIRNPQKKYRLQDEVKCRVLTCDPENKKLLMTLKKTLVESNL 529

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
             A ++         ++A  +L  H  +++I    K++  V+    YN   G     +   
Sbjct: 530  PALTSY--------KQAKPELQTHGFISSI----KDSGCVVKF--YNDVRGLVPQRELGA 575

Query: 1008 QKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGS 1065
            Q    P + F  GQ V  TV  L S     R+LL  + +S+ ET    +++KK++  VG 
Sbjct: 576  QPISTPGEVFYVGQVVKVTV--LNSEPEQERMLLSFRLLSDKETEGPAQSQKKATIKVGQ 633

Query: 1066 LVQAEITEIKPLELRLKFGI---GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            LV  ++   K  E  L+  I        +  T ++D  +N  + L+S  + G  V  R++
Sbjct: 634  LVDVKVK--KKTEKGLEVSILPNNIRALLPTTHLSDSVNNS-QLLYSWLRAGD-VLHRVL 689

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
              S+           L  KP++++  E G    +F E     G  +TG+V  +      +
Sbjct: 690  CLSHSDGH-----IILCRKPALISAVESGQDPKVFSE--FQPGMLLTGFVKTIKAYGVFV 742

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
                 L        SA     +      F  G+ V   V ++ +EK+ + L LR   D  
Sbjct: 743  QFPSGLSG--LAPKSALSDKFVTTVSDHFVEGQTVVAKVTNVYEEKERMLLSLR-LSDVC 799

Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY-----------GRVH 1290
             + T   S   +  ++ E   V   +S   S +   + +I P L            G + 
Sbjct: 800  QEDTAVSSLALLSQWLEELQGVRSLMSSRDSMLTQTLAEITPGLLMDLVVQDMSSDGSLM 859

Query: 1291 FTELKNICVSDPLSGY-------DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
            F+      +    S Y       D GQ  K  VL +  T++   HV  SLR  L    + 
Sbjct: 860  FSSGSVPGLVLKASRYHQGGKVMDPGQRTKAVVLHVD-TLKSEVHV--SLRQEL---VNR 913

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
             S  L  + +    H   IE L     +             +M + +L A  + S+L+D 
Sbjct: 914  KSKQLKKNTE----HRAVIEHLEKTFAIGS-----------LMETGQLVAFPVTSHLNDT 958

Query: 1404 YVESPEKEFPIGKLVA-----------GRVLSVEPLSKRVEVTLKTSDSRTASQ-----S 1447
            +    EK   +G+ V+           G  L+VE   K+    L  +D   A +     S
Sbjct: 959  FRFDSEK-LQVGQRVSLIIKSAKPSDIGLFLAVESSVKKRTPALPLADPEPAGEEPGVMS 1017

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
             +     L +G++V G +K V++  + +T+EN  LVG  H S++ +D
Sbjct: 1018 SLLEKPTLPIGEMVTGTVKSVKATHVVVTLEN-GLVGCIHASQILDD 1063



 Score = 47.8 bits (112), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 6/132 (4%)

Query: 1408 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1467
            PEK F  G +   RV+   P+     ++LKTS      ++      +LH G +V  ++  
Sbjct: 407  PEK-FKPGNMHKCRVIDYSPMDDLALLSLKTS----IIEAPFLRYHDLHPGQVVKAKVFA 461

Query: 1468 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
            + SYG+ + +    + GL     L++  + N +  YR  ++VK ++L  D E +++ + +
Sbjct: 462  LRSYGMIVKV-TEQIKGLVPTLHLADVQIRNPQKKYRLQDEVKCRVLTCDPENKKLLMTL 520

Query: 1528 KSSYFKNDADNL 1539
            K +  +++   L
Sbjct: 521  KKTLVESNLPAL 532


>gi|240282264|gb|EER45767.1| U3 snoRNP-associated protein Rrp5 [Ajellomyces capsulatus H143]
          Length = 1781

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 379/1416 (26%), Positives = 668/1416 (47%), Gaps = 188/1416 (13%)

Query: 593  ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 648
            +TK+E   G +V+F +   GF   S L  D     SS    Y V    + RI   +  S 
Sbjct: 468  VTKVEPGLGVYVQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARI---VGFSA 524

Query: 649  RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 699
              NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 525  LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 583

Query: 700  PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
            P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 584  PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 640

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 641  DILPGNQSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 700

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
            +V++E  ++ +S K    S+       EH              H G+             
Sbjct: 701  NVDAELRKLVVSCKDQLSSTEAYKRALEHI-------------HPGN------------T 735

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI----------QAAILDV 927
            + G V E ++  +++  E+   V      H   G    +G+ +          +  IL++
Sbjct: 736  VSGTVFEKSNEDILLKLEDSGLVARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNM 795

Query: 928  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-IVKENYL 986
             K+ RL+ ++ K           S +QA+++       +DL     V   V+ I+ +   
Sbjct: 796  QKSHRLIKVTNKP----------SLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGLF 845

Query: 987  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 1046
            V  L      +    V D +  K P   +   Q +  TV ++       R +L LK    
Sbjct: 846  VEFLGGLTGFVPKRLVDDDHVNK-PSFGYALAQPISLTVQSIEDDRQ--RFILTLKEPHT 902

Query: 1047 TETSSSKRAKKKSSYD------------------VGSLVQAEITEIKPLELRLKFGIGFH 1088
             +   S R K+  + +                   G + +A++  IK  ++ ++      
Sbjct: 903  GKQRVSDRDKESDNANQSSINPIDGDIKSLDDLTFGRITKAKVVSIKETQINVQLAENIQ 962

Query: 1089 GRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF---LWE 1137
            GRI ++EV D    + +       FK  Q +  RII    A+S++  P   +S    ++E
Sbjct: 963  GRIDVSEVFDSWEAIKDRKQPLRFFKAKQILPVRIIGIHDARSHRFLPISHRSGKYPVFE 1022

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
            LS KPS L  +++    L     V IG    G+V  + ++   ++IS +++ +L + D +
Sbjct: 1023 LSAKPSSLESTDLD---LLSLDKVKIGSAWIGFVNNIGDDCLWISISPNVRGRLRLTDVS 1079

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
             + S L +    F +G A+  HV  ++ +K  L L  +    G S   + IS+       
Sbjct: 1080 DDLSLLSDITTNFPVGSAIKVHVTGVDTDKNRLDLSAK---HGGSPNKLTISD------F 1130

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVL 1317
             +G+I+ GR++++      ++VQ+   + G ++      I ++D  S  +   F K ++L
Sbjct: 1131 SKGEILLGRVTRVTEH--QVLVQLSDTVVGAINL-----IDMADDYSKINPADFHKNELL 1183

Query: 1318 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1377
             +         +++  +  L  M S+     S  +  P   +  I  +  N IV+G+V+ 
Sbjct: 1184 RVC-----VVDIDVPKKKILLSMRSSRVLSSSLPIQDP--EISSISQIKVNDIVRGFVRR 1236

Query: 1378 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437
            V   G F+ L   + A V +S+LSD Y++  + EF + +LV GRV+  +P S +++++LK
Sbjct: 1237 VADNGLFVTLGHDVTAYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLK 1296

Query: 1438 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHV 1496
             S      ++ I  + +L  G  V G+++ VE +G FI I+ T NL GLCH +E++E  V
Sbjct: 1297 QSVLDPNYKTPIT-IKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKV 1355

Query: 1497 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-----DADNLQMSSEEESDEAI 1551
            ++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+     D +N+Q  SEE   E+ 
Sbjct: 1356 EDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKDSDDESDGENVQDKSEENVSESQ 1415

Query: 1552 EEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM--- 1608
             + G                D+++ES D  S+    +E   +    E +  D    M   
Sbjct: 1416 YDGG---------------MDLELESGDDISMGGVDLEDTMNGDNSESDSSDWDVQMTGT 1460

Query: 1609 -DNGIS------------QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1655
             D GI+             N   TDE    D  ++     K+K+ R+QEI+      L+ 
Sbjct: 1461 KDAGITGGLVTSGFDWNGNNTVGTDEDNESDSDSDNKTAVKKKKRRKQEIQVDRTGDLDT 1520

Query: 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1715
            + P++  ++ERL+   PNSS +W+KYMAF L +++V+KAR IAERAL++I+I ++ EK N
Sbjct: 1521 NGPQSVADYERLLLGEPNSSLLWLKYMAFQLELSEVDKAREIAERALRSISIGQDTEKFN 1580

Query: 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1775
            IWVA  NLEN +GN  ++ +  VF+RA QY DP+++H  L  +Y ++ ++  ADEL   +
Sbjct: 1581 IWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIHERLTSIYIQSGKHDKADELFQAI 1638

Query: 1776 I-KKFKHSCKVWLRRVQRLLKQQQEGVQA-VVQRALLSLPRHKHI----KFISQTAILEF 1829
            + KKF  S  ++L     L   + E  +   + RA    P H H+    KF+S  ++L+ 
Sbjct: 1639 LKKKFTQSPNIYLNFATFLFDTRAEPERGRALSRAHPITPTHTHVDITSKFVS-GSLLQR 1697

Query: 1830 KNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888
            ++       ++FE +   + P+  DLW++ LD EI+ GD++             L  K+ 
Sbjct: 1698 RHRTW---TTIFERLHHLFIPQTRDLWNVLLDLEIKNGDME-----------QRLKDKQA 1743

Query: 1889 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            KF FKK+L +E+  G+E+ ++ VK +A +YV +  A
Sbjct: 1744 KFFFKKWLAFEEKTGDEKMVDEVKARAADYVRAIKA 1779



 Score =  177 bits (450), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 202/835 (24%), Positives = 357/835 (42%), Gaps = 57/835 (6%)

Query: 52  PVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKN---KKKKKKTERKANETVDDLG 108
           P FPRGG + L+  E+ +IH +   +    ++G   ++    +   + +R + E      
Sbjct: 68  PAFPRGGANILSPLEQKQIHIQATRDVLFEQKGAQAQDDIDNEDGTQKKRSSKEFGIKST 127

Query: 109 SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAAD 165
                     +P+ + K   + I  G K+ G V+ +N  D+ + LP  L G   L   + 
Sbjct: 128 KGKTKSKKHTIPQASTK--EERIVVGSKILGQVSSINAHDIGLSLPNNLTGYIPLTAVSK 185

Query: 166 ALDPILDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQLDDD---KKEIG 208
            L   ++  + ++++                L + F +GQ +   V   + +    K  G
Sbjct: 186 TLQQKIEKLLNSSQEEDDNSDGDDGGDGDLDLKSYFKLGQYLRAAVTSTETEVNHGKIKG 245

Query: 209 KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL 266
           K+ I LS+       GLS   +     + A V S+EDHG ++  GL      GF+    +
Sbjct: 246 KKHIELSVDPREANSGLSKSDLVVNATVQASVLSVEDHGLVMDLGLEDGQTRGFMSSKEI 305

Query: 267 AEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGM 323
             +   + +K G +   VV   +    VV LS++  T              +I+  +PG 
Sbjct: 306 PHDLELLQIKEGTVFLCVVTGHNANGSVVKLSANLPTAGSIKKSHFLASAPTINSFLPGT 365

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT 383
                +  +   G+    +      VDI     T    +    Y+   K+  R++   PT
Sbjct: 366 AAEILLTQVTSTGMAGKIMGMLDAVVDIVQSGATAGKEDITARYHVGAKIKGRLICTFPT 425

Query: 384 SRAVGLTLN---------PYLLHNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
           +  + L  +         P +L +++    V  +  I  + KV +V+ GLG+ +      
Sbjct: 426 AEPLKLGFSILDHVVKFTPTVLDHKSSCEGVPAISAIVPEVKVTKVEPGLGVYVQFNDKH 485

Query: 434 VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
                   +SD   + +   +  Y   S    RI+GF  L+ L    L+    +      
Sbjct: 486 YGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVGFSALDNLYLLSLERKVIDQPFLRL 545

Query: 494 SDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 548
            DV  G VVKGK+    I  D   G IV    G+  L P  HMS+ ++  P KKF+ G +
Sbjct: 546 EDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGISGLVPGMHMSDTKLQHPEKKFREGVQ 605

Query: 549 LVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           +  R+L V  + +++ +T KKTL+ S+ +    Y++      + G I  I+ HG  V+FY
Sbjct: 606 VSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYSDILPGNQSPGTIISIQSHGAIVQFY 665

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
             V+GF P SE+      +P+  +++GQVV    ++     R++ +S    +  T   + 
Sbjct: 666 GEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNVDAELRKLVVSCKDQLSSTEAYKR 725

Query: 665 DL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
            L  +  G+ VSG V   +   +++ +   G     +  EH++D          + I+ G
Sbjct: 726 ALEHIHPGNTVSGTVFEKSNEDILLKLEDSGLV-ARLNAEHVSDGQASRNGAALARIRVG 784

Query: 722 YEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGC 777
            + ++LL+L+ + S+ L+  + K SL  + Q  +LP+    +   S V G+V NII  G 
Sbjct: 785 QKLNELLILNMQKSHRLIKVTNKPSLKQARQRGELPAKFEDLEEGSKVTGFVKNIIADGL 844

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           FV FLG LTGF P+    D      S  Y + Q +   +  +  +  R  L+LK+
Sbjct: 845 FVEFLGGLTGFVPKRLVDDDHVNKPSFGYALAQPISLTVQSIEDDRQRFILTLKE 899



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 22/248 (8%)

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
            ++I     G ++  RV  + E+ V++       G +++  + + +   N   D+++++ +
Sbjct: 1125 LTISDFSKGEILLGRVTRVTEHQVLVQLSDTVVGAINLIDMADDYSKIN-PADFHKNELL 1183

Query: 374  NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRV-DRGL 423
               ++ +D   + + L++    + + + P         S +KV DI  +  V RV D GL
Sbjct: 1184 RVCVVDIDVPKKKILLSMRSSRVLSSSLPIQDPEISSISQIKVNDIV-RGFVRRVADNGL 1242

Query: 424  GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
             + L    T     AYV ISD+++  +++ + +++    VR R++            LK 
Sbjct: 1243 FVTLGHDVT-----AYVRISDLSDSYLKEWQNEFQVNQLVRGRVILADPESNKLQMSLKQ 1297

Query: 484  SAFE---GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVK 538
            S  +       T  D+K G  V GKV  V+ FGA +   G   +  LC    M+E ++  
Sbjct: 1298 SVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGAFIVIDGTANLSGLCHRTEMAEGKVED 1357

Query: 539  PGKKFKVG 546
              K F+ G
Sbjct: 1358 ARKLFEKG 1365


>gi|194378984|dbj|BAG58043.1| unnamed protein product [Homo sapiens]
          Length = 1299

 Score =  385 bits (990), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 333/1163 (28%), Positives = 556/1163 (47%), Gaps = 116/1163 (9%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGPTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGARAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397  HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
             +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528  SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
             GQVVK  +++  P+  R+ LSF +        +P+  S+     + +G LV   V   T
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLSCDPEPKKEPSGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648  KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D   
Sbjct: 707  KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
               S  +  GQ+V + + +V+ E  R+ LSL+ S C   D + +    LL + +  LQ  
Sbjct: 767  TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825

Query: 859  ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
                S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG  
Sbjct: 826  RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
            VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ 
Sbjct: 886  VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
              AIV+ ++++  + SL E  H   ++  S  N T +F  ++   GQ V  T+       
Sbjct: 930  --AIVQHLEKSLAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987

Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
            T   L +   A   T   + K ++                 KK +  +G +V   +  IK
Sbjct: 988  TGLLLAVEGPAAKGTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +    G  G IH + + DD         +  K+G+TVTAR+I      DM K+F 
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102

Query: 1136 W-------------ELSIKPSML 1145
            +             ELS++PS L
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSEL 1125



 Score = 77.0 bits (188), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 149/326 (45%), Gaps = 46/326 (14%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +
Sbjct: 433  ---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVLTIKSYGMLVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S
Sbjct: 473  GEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLIES 528

Query: 1448 E---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++ 
Sbjct: 529  KLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFY 587

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ VKV +L  +  K R+ L  K S
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 159/724 (21%), Positives = 271/724 (37%), Gaps = 121/724 (16%)

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGARAFLPLLKAQEYIRQKNKGAKL 233

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 1025
             V Q +N IVE VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIVEKVKGNGGVVSL-----SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQV 288

Query: 1026 MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 1076
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVHLSL 345

Query: 1077 ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 1100
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 1101 SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1158
                 N+F+   FK G T   RII  S   +     L  LS++ S++             
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQ------YLRY 447

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-----QRRFHIG 1213
             D+  G  V G V  + +   L+ +   ++  +        P  L +      ++++HIG
Sbjct: 448  HDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLV-------PPMHLADILMKNPEKKYHIG 500

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
              V   VL  + E K L + L+          +    D        G I+  R+      
Sbjct: 501  DEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFII--RVKDY--- 555

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1333
              G +V+   ++ G V   EL    + DP   +  GQ VK  VL    +        LS 
Sbjct: 556  --GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERML---LSF 610

Query: 1334 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLD 1392
            + S D       S         G   +K + ++   +V   V   T  G  + +L   + 
Sbjct: 611  KLSCDPEPKKEPS---------GHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIR 661

Query: 1393 AKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE-I 1449
            A +  S+LSD     P        G ++  RVL +     RV +  K +   T    +  
Sbjct: 662  AFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGRVLLCRKPALVSTVEGGQDP 720

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
             N S +H G ++IG +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V
Sbjct: 721  KNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 779

Query: 1510 KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA 1569
              K+  VD+EK+R+ L ++ S       +L ++S    ++ +EE+    RS +    SV 
Sbjct: 780  AAKVTNVDEEKQRMLLSLRLS--DCGLGDLAITSLLLLNQCLEELQGV-RSLMSNRDSVL 836

Query: 1570 VQDM 1573
            +Q +
Sbjct: 837  IQTL 840


>gi|190348684|gb|EDK41184.2| hypothetical protein PGUG_05282 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1674

 Score =  385 bits (988), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 388/1485 (26%), Positives = 685/1485 (46%), Gaps = 172/1485 (11%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            ++PG++V   V  +   G   +  G V     L ++ E+++     KF +G  +  RV+ 
Sbjct: 301  IQPGIIVDALVAEITKEGITTKVFGMVDGTISLSNIGEYDLDSLNHKFTIGNSIKARVIA 360

Query: 556  VKSKRITVTHKKTLVKSKLA-ILS-SYAEATDRLITH--GWI-TKIEKHGC---FVRFYN 607
            V  K  T    K LV S L  ILS    E TD L     G++  ++E  G    ++    
Sbjct: 361  VLLKGGT----KKLVLSILPRILSLDSQENTDALEAFPIGFVFDQVEVIGLDSNYIFVST 416

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS--------SIPASRRINLSFMMKPT 659
            G   +  +  +      +    Y VG   K R++         ++    +I  +  M P+
Sbjct: 417  GTSSYHGQVHISKINQEKVIDDYFVGSKHKARVIGLNKFEGLLTLTMDPKIIDTKFMVPS 476

Query: 660  RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMK 715
            ++   + +  G ++      V P+   + V         +P EH++D    + E    + 
Sbjct: 477  QIPVGEYINGGEIIK-----VLPDGAGIQVKIFNDFDAFVPPEHMSDVRLVYPERKYKVG 531

Query: 716  SVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIE 774
            S IK         VL    S + ++ K +L+N    ++ S+             V   + 
Sbjct: 532  SKIKGR-------VLKVHGSKIFITLKKTLVNIEDDEVLSNFESAEIGLKTPATVEKFVH 584

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             G  V F G L  F P+++  +    D       GQ+V   I+D +    R+ ++LKQ+ 
Sbjct: 585  NGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIMDRDETQQRLIVTLKQND 644

Query: 835  CS----STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHESNDFG 889
             +    S  +S +    ++E  I  ++ SK   S +  +EG  + G +  G++ + N   
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASI--VEKSKDKDSVIVEIEGSNLRGVIYAGQLSDGN--- 699

Query: 890  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
                +E+   +Y            +++G  ++A +L+     R V LS K  FI+     
Sbjct: 700  ----YEQTRALY----------KKIQAGDKLEAVVLERDMKTRSVILSAKQSFIN----- 740

Query: 950  NSNRQAQKKKRKREASKDLGVHQTV-NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
                   K  +      D+ V   V    ++ V    L ++       +  A  +  N  
Sbjct: 741  -----GAKNNQIPSQFSDVTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPN 795

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE--------TSSSKRAKKKSS 1060
            +   K+F   QSV   V+ L + +   R LL L +  ++E          S+K  K  + 
Sbjct: 796  EDILKRFYKNQSVSCRVIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTK--KLITD 851

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVT 1118
            Y  G+  QA+I  IK  +L ++      GR+ IT+  +  S++ +     S F   + ++
Sbjct: 852  YTPGAKTQAKIKSIKGTQLNVQLADNLQGRLDITQCFEKWSDIKDKNQPLSQFHKDEILS 911

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG---SKLLFEECDVSIGQRVTGYVYKVD 1175
             R++      D K      +S + S  T+ E+       + E  DV +G     +V  + 
Sbjct: 912  VRVLGYH---DAKNHTFLPISHRKSKNTILELTLLEKDPITEIKDVKVGSEHVAFVNNLA 968

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
              +  +++S  +K ++  +D + E S  ++ + R  IG A+   V  I++E K + L  R
Sbjct: 969  RGFVWVSMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNIILTSR 1028

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                     TV    D     +        R+ K+L     ++V++   +    + T+  
Sbjct: 1029 KH-------TVTKFED-----VELNKQYPARVLKVLPSF--VLVELAHDVVASSYITDAL 1074

Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1355
            N   S     +    +    VL + +  +    + +SLR        TN +     VD  
Sbjct: 1075 NDYSSALNEVFHANDYTTATVLAVDKDSK---KISVSLR--------TNKA-----VD-- 1116

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
             K +  +EDL    +V+G+VKNV + G ++ L R +   V +S+LSD Y++  +K F   
Sbjct: 1117 -KVINSVEDLQRGDVVKGFVKNVANNGVYVSLGRSVHGLVRVSDLSDSYLKDWKKYFKQH 1175

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL---SNLHVGDIVIGQIKRVESYG 1472
            + V G+V++ +    RV +TLK S+       E+N L    +L  G++  G +++V  +G
Sbjct: 1176 QPVVGKVVNCKE-EGRVLITLKESEV----NGELNVLKKFEDLKEGEVYEGSVRQVTDFG 1230

Query: 1473 LFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1531
            +F+ ++ T N+ GLCH SE++++   +++ ++  G++VKVKIL ++ EK+++SLGMK SY
Sbjct: 1231 VFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEKKQLSLGMKVSY 1290

Query: 1532 FKNDA-------DNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLV 1584
            F  +A       D+++M+  EE+  +  E    +   ++E +  A  D+D + E+  ++V
Sbjct: 1291 FAPEATQNEDSDDDVEMAESEEATPSASESSDESDEEIVEGAFEADSDVDHDDEETSNVV 1350

Query: 1585 LAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK-------KKE 1637
                                  D   G+S N G    A  +D+               K+
Sbjct: 1351 --------------------AEDSGMGLSTN-GFDWTASILDQAQESDESSDDEDFVNKK 1389

Query: 1638 KEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            K++R  ++   +   +   AP++  +FER++  SPNSS +W+ YM+F L ++++EKAR I
Sbjct: 1390 KKKRSTKVVEDKTADINTRAPQSVSDFERMLIGSPNSSVLWMNYMSFQLQLSEIEKAREI 1449

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
             ERAL+TIN REE EKLNIW+A  NLEN +    +E++   F+R+ QY +P  +H  L  
Sbjct: 1450 GERALKTINYREEQEKLNIWIALLNLENTFDT--KESLEDTFRRSCQYMEPLTMHQKLAS 1507

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHK 1816
            +Y  +E+   A  L   MIKKF  +  VW+     LL +Q  + V   + +A+ +LP  +
Sbjct: 1508 IYTLSEKFDEATRLYKVMIKKFSKNVSVWVAYASYLLDRQMNDEVHEALAKAMQALPSKE 1567

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
             I+ + + A LEF  G  ++GRS+FEG++++ PKR DLW++YLDQEI+L D   +  LFE
Sbjct: 1568 SIEVVKKFAQLEFTKGDPEQGRSLFEGLMADAPKRIDLWNVYLDQEIKLNDKSKVENLFE 1627

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            R I+  L  K+ KF F K+L+YE+   +E+    VK KA EYVE+
Sbjct: 1628 RLITKKLTKKQAKFFFTKWLKYEEDQNDEKSGARVKAKAAEYVEA 1672



 Score =  181 bits (458), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 206/836 (24%), Positives = 367/836 (43%), Gaps = 85/836 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFE---AVERGLHKKNKKKKKKT-----ERKANET 103
           FPRGG   LT  E  EI  E   D  FE   A +R   +K+++ +KK+       K +E 
Sbjct: 17  FPRGGASVLTPLEVKEISNEAARDVLFESSTAAKRTSGEKSQQARKKSKKSKKNTKESEE 76

Query: 104 VDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA 163
           V+++ ++               ++ K +  G  + G +++VN+ DL I +   L G    
Sbjct: 77  VENVITI-------------ESLSFKKLFPGTTVLGQISKVNKLDLEIAIGDNLIGYVPI 123

Query: 164 ADALDPILD--------------------NEIEANEDNLLP---TIFHVGQLVSCIVLQL 200
           +   D I                            +DN LP   +IF  G+ +   V + 
Sbjct: 124 SSISDEITRKVELYQQESDSSEDEEEEGVTRTATMKDNELPDLQSIFKAGEWLRAKVTEA 183

Query: 201 DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF 260
           +  + +  K++I  ++    + + +  E +  G +L   V S+ED G IL+ G+   +GF
Sbjct: 184 ELSQSK--KKRIQFTIEPENVNESIEDEDLIPGNLLQCSVVSVEDRGVILNTGVSGKSGF 241

Query: 261 LPRNNLAENSGIDVKP---GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
           +    L+ N+ ID++    G ++   + +   TR  + L     +VS    K     S+D
Sbjct: 242 ISNKELS-NANIDLQSLSEGYVMMTSIAAKPTTR-TISLRPATSSVSSKKNKVSNISSVD 299

Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
            + PG++V   V  I + G+         GT+ + ++   +   +  + +     + AR+
Sbjct: 300 AIQPGIIVDALVAEITKEGITTKVFGMVDGTISLSNI-GEYDLDSLNHKFTIGNSIKARV 358

Query: 378 LFV--DPTSRAVGLTLNPYLL-----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIP 430
           + V     ++ + L++ P +L      N        +G ++DQ +V+ +D      + + 
Sbjct: 359 IAVLLKGGTKKLVLSILPRILSLDSQENTDALEAFPIGFVFDQVEVIGLDSNY---IFVS 415

Query: 431 STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
           +   S    V IS + +E   K+   Y  GS  + R++G    EGL T  +     +   
Sbjct: 416 TGTSSYHGQVHISKINQE---KVIDDYFVGSKHKARVIGLNKFEGLLTLTMDPKIIDTKF 472

Query: 491 FTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
              S +  G  + G ++I V  D  G  V+      A  P  HMS+  +V P +K+KVG+
Sbjct: 473 MVPSQIPVGEYINGGEIIKVLPDGAGIQVKIFNDFDAFVPPEHMSDVRLVYPERKYKVGS 532

Query: 548 ELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           ++  RVL V   +I +T KKTLV      +LS++  A   L T   + K   +G  V F+
Sbjct: 533 KIKGRVLKVHGSKIFITLKKTLVNIEDDEVLSNFESAEIGLKTPATVEKFVHNGAIVSFF 592

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
             ++ F P++E+      +       GQ V  RIM      +R  L   +K   V++   
Sbjct: 593 GNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIMDRDETQQR--LIVTLKQNDVTKAQQ 650

Query: 667 VKLGSLVSG-------VVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 718
             + S+V G       +V+       V+  I     +G I    L+D + E    +   I
Sbjct: 651 SAVSSVVPGKTIVEASIVEKSKDKDSVIVEIEGSNLRGVIYAGQLSDGNYEQTRALYKKI 710

Query: 719 KPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQ--QLPSDASHIH-PNSVVHGYVCNIIE 774
           + G + + +++  D ++ +++LSAK S IN A+  Q+PS  S +   + V+ GY+ ++  
Sbjct: 711 QAGDKLEAVVLERDMKTRSVILSAKQSFINGAKNNQIPSQFSDVTVSDKVLTGYIKSVTN 770

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            G FV F G+LTG      A      D+ K +Y  QSV   ++ +++E  R  LSL
Sbjct: 771 LGLFVAFGGKLTGLVLAKYATKNPNEDILKRFYKNQSVSCRVIRLDNENKRFLLSL 826



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 90/175 (51%), Gaps = 10/175 (5%)

Query: 1358 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1417
            ++  ++ + P +IV   V  +T +G    +   +D  + LSN+ +  ++S   +F IG  
Sbjct: 294  NISSVDAIQPGIIVDALVAEITKEGITTKVFGMVDGTISLSNIGEYDLDSLNHKFTIGNS 353

Query: 1418 VAGRVLSV--EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV--ESYGL 1473
            +  RV++V  +  +K++ +++        SQ   + L    +G  V  Q++ +  +S  +
Sbjct: 354  IKARVIAVLLKGGTKKLVLSILPRILSLDSQENTDALEAFPIG-FVFDQVEVIGLDSNYI 412

Query: 1474 FITIENTNLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
            F++   ++  G  H+S+++++ V D+    Y  G K K +++ ++K +  ++L M
Sbjct: 413  FVSTGTSSYHGQVHISKINQEKVIDD----YFVGSKHKARVIGLNKFEGLLTLTM 463



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 126/299 (42%), Gaps = 40/299 (13%)

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG---ISIDLLVPGMMVSTRVQSIL 333
            G  ++  V+ ID   K + L+S   TV+K    +L       +  ++P  ++      ++
Sbjct: 1006 GAAIKAKVKQIDEEHKNIILTSRKHTVTKFEDVELNKQYPARVLKVLPSFVLVELAHDVV 1065

Query: 334  ENGVMLSFLTYFTGTVD-IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
             +  +   L  ++  ++ +FH           NDY       A +L VD  S+ + ++L 
Sbjct: 1066 ASSYITDALNDYSSALNEVFH----------ANDY-----TTATVLAVDKDSKKISVSLR 1110

Query: 393  PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVA 446
                 N+A    +   +   +  VV+     G + ++ +  V      S    V +SD++
Sbjct: 1111 T----NKAVDKVINSVEDLQRGDVVK-----GFVKNVANNGVYVSLGRSVHGLVRVSDLS 1161

Query: 447  EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVK 503
            +  ++  +K +K+   V  +++  +  EG     LK S   G   ++    D+K G V +
Sbjct: 1162 DSYLKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESEVNGELNVLKKFEDLKEGEVYE 1220

Query: 504  GKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            G V  V  FG  V+  G   V  LC    +++ + V     F  G  +  ++LG+ S++
Sbjct: 1221 GSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEK 1279


>gi|345324023|ref|XP_001512041.2| PREDICTED: protein RRP5 homolog [Ornithorhynchus anatinus]
          Length = 1838

 Score =  385 bits (988), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 383/1471 (26%), Positives = 676/1471 (45%), Gaps = 162/1471 (11%)

Query: 54   FPRGGGHSLTQRERDEIHA-EVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFG 112
            FPRGG      RE+      E D  F+    G  ++ KK +   +RK     D       
Sbjct: 8    FPRGGVKPKPDREKAVKQPLEQDNLFDVSMHGRTQRRKKSQNDPKRKKTRRSDKKEPKKS 67

Query: 113  DGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDP 169
            D    +L      ++++N+S G+ L G V E N+ ++VI LP GLRG  +A   +D    
Sbjct: 68   DAELFEL------LSVQNLSEGVLLLGCVKESNKYEMVISLPNGLRGFVQATSISDTYTK 121

Query: 170  ILDNEIEANE--DNLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL 225
             L  ++E  E  ++++P   ++  G LV C+V  ++  KK  GK+ I LSL    + +GL
Sbjct: 122  KLAEQVEREEFLEDVMPLSALYLPGMLVRCVVNSIETTKK--GKQSIRLSLNPKEVNRGL 179

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLL 280
            S  T+  GM+LT  V S EDHGY++  G+     FLPR    E     N G ++K G  L
Sbjct: 180  SAGTLSPGMLLTGTVSSREDHGYLIDIGVRESKAFLPRKKAQEYISMRNKGSELKLGQYL 239

Query: 281  QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
               V  +     +V LS     V+  +  + +  ++D ++PG++V   +Q +  +G+ LS
Sbjct: 240  WCYVEEVKGNGSIVRLSIGSAEVASALATEEQNWTLDNVLPGLVVKAVIQKVTPHGLSLS 299

Query: 341  FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA 400
            FL+ + G VD  HL    P  +    Y   +KV A IL V   ++ V LTL P  LH   
Sbjct: 300  FLSIYRGLVDFLHLD---PKKS--QSYFATQKVKACILSVHRQTKTVRLTLRPNFLHPGL 354

Query: 401  PPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
            P S +    VG + +   V    +  G    +    +   A+     ++  +     +K+
Sbjct: 355  PLSQLSTSLVGTVLENVPVQGFFKKAGATFKLKDGSL---AFARFKHLSNSKKSFNPEKF 411

Query: 458  KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
              G   + RI+    ++ L    LK          + D++PG +V+GKV+A+  FG +V+
Sbjct: 412  LPGKTHKCRIIDLSPMDDLVLLSLKEKIINAPFLQYRDLQPGQLVQGKVLALRPFGVLVE 471

Query: 518  FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLA 575
                +K + PL H+++ ++  P KKF +G E+  RVL      K++ +T KKTLV S L 
Sbjct: 472  VTDSIKGVVPLLHLADVQLKHPEKKFHLGDEIKGRVLSCIPSMKKLVLTLKKTLVNSDLP 531

Query: 576  ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
            +++SY  A  +L  HG+I+KI + GC V FYN V+G  P+  LG+D   +  S++++GQV
Sbjct: 532  VITSYRAAKPQLQAHGFISKITEVGCIVGFYNNVRGLVPKGRLGVDCSEDLKSVFYLGQV 591

Query: 636  VKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLGSLVSGVVDVVTPNAVVVYV-IAK 692
            +K  +++  P   R+ LS+  KP   SE       LG +V   V VV    + + V I  
Sbjct: 592  IKVTVVNCSPNQERLLLSY--KPMMDSEPAGSAEMLGQMVD--VKVVKKTDMGLQVSILP 647

Query: 693  GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ-- 750
            G     +P  HL+DH+ ++ ++   ++P     ++L L ++    +LS K +LI +A+  
Sbjct: 648  GNVPAFLPKIHLSDHVSNSQLLWHWLQPNDILHRVLCLGSKRGRNILSRKPALICAAEEG 707

Query: 751  QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
            Q+      I P  +  GYV +I++ G FV      TG +PR    D         Y VGQ
Sbjct: 708  QVARYFFDIQPGMLFTGYVTSIMDYGVFVELPFGFTGLSPRVAISDKFVTKTQDHYTVGQ 767

Query: 811  SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE-----EKIAMLQSSKHNGSE 865
            +V + + DV+ E  R+ LSL+ S C+  D + +    L +     + + +L  ++ N + 
Sbjct: 768  TVTALVTDVDEEKQRMLLSLRLSDCNLRDPATVGFSLLCQCLEELQGVRLLMKNQDN-TL 826

Query: 866  LKWVEGFIIGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAI 924
            ++++     G  +   V E  + G V  S      +    + + + G  +E    ++  +
Sbjct: 827  IQFLASLTPGLRLNLIVQEVLEGGSVTFSGGLGPGLVLSASKYHVGGEKLEPLQRVKTVV 886

Query: 925  LDVAKAERLVDLSLKTVFIDR-FREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKE 983
            L V   +  V +SL+   ++R F++   N Q                     A+V+ +++
Sbjct: 887  LHVDTLKLKVHVSLRPELLNRKFKKVKLNDQHM-------------------AVVQHLEK 927

Query: 984  NYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV---------MALPSSST 1033
             +++ SL E    + +   S +N T +F  ++   GQ V  T+         + L +   
Sbjct: 928  EFVIASLVETGQLVAFPIASHFNDTFRFDSEKLQLGQGVCLTLRTTEPGDFGLLLATKEP 987

Query: 1034 AGRLLLL-----LKAISETE------------TSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
            A + ++      L+   E +               ++ A KK ++ +G LV+  +  +KP
Sbjct: 988  ASKRVVPKPQEKLEPTGEPQEKVGPTRKPQKKVGPTREAVKKHAFSIGELVKGIVRSVKP 1047

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK------PDM 1130
              + +    G  G IH++++ D+   +     +  K  + +TAR+I   +       P  
Sbjct: 1048 TYIIVTLESGITGFIHVSQILDE-VPLGTCPTTRLKAKKRITARVIGGKDMRTRRFLPAT 1106

Query: 1131 KKSFLW---ELSIKPSMLTVSEIG-------SKLLFEECDVSIGQRVTGYV--YKVDNEW 1178
               F+    ELSI+PS L  S            L F   +V  G++V  +V  Y +  + 
Sbjct: 1107 HSRFIRTVPELSIRPSELKASSTALNTHSYSHALKFRGYNV--GKQVICFVKKYNIVEKC 1164

Query: 1179 ALLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
              + +S  +  ++   +L  +Y+   L+  +++F +G+A++  V+  +            
Sbjct: 1165 LEVEVSPVISGKVPHLLLSLSYK--VLRHPEKKFKVGQALSAIVVGTD------------ 1210

Query: 1237 FQDGISDKTVDISNDNMQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
                    +         T IH   +G I  G++ K++  V GL V++     G+V    
Sbjct: 1211 --------SSRSLLILSLTGIHKLKKGTITMGKVMKVIPDV-GLTVRLPFECAGQVSIFH 1261

Query: 1294 LKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1353
            +++   + PL G+   + VKC VL    + +GT  +ELSLR S    + +N  +   D  
Sbjct: 1262 IQDSYSAVPLEGFKPEKIVKCCVL----STKGTM-MELSLRLS---RTKSNYQEKVED-- 1311

Query: 1354 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---K 1410
               + +  ++D+    +++GYVK+V  +G FI +S  +  +V    +S   V + +   K
Sbjct: 1312 ---REVTSLDDVKEGELLRGYVKSVEHQGVFISISSTVVGQVQYQCVSQYLVSNQKLYNK 1368

Query: 1411 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
                G L+  +VLSV      VE++L   D+
Sbjct: 1369 YLRKGMLLTTKVLSVNKEQNLVELSLLPQDT 1399



 Score =  271 bits (692), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 137/284 (48%), Positives = 193/284 (67%), Gaps = 4/284 (1%)

Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            ++ E+E+   E  L++    P T D+F+RLV SSPNSS +W++YMAF L   +++KAR++
Sbjct: 1549 QKAEKELSRIEATLMDPSRQPETADDFDRLVLSSPNSSILWLQYMAFHLHATEIDKARAV 1608

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL+ I+ REE EK N+WVA  NLEN YG+  EE++ KVF+RA+QY D  KV L L  
Sbjct: 1609 AERALKIISFREEQEKFNVWVALLNLENMYGS--EESLTKVFERAVQYNDSLKVFLQLAD 1666

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHK 1816
            +Y ++E+   A+EL  KM+K+F+    VWL+    LL++ Q E    ++ RAL  LP   
Sbjct: 1667 IYAKSEKYTEAEELYGKMLKRFRQEKSVWLKYSAFLLRRGQFEANHQLLHRALKCLPDKD 1726

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
            H+  IS+ A LEF  G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FE
Sbjct: 1727 HVDVISKFAQLEFHLGDAERAKAIFESTLSNYPKRTDIWSVYIDMTIKHGSQKEVRDIFE 1786

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            R I LSL  K+MKF FK+YL+YEK  G  E ++ VK+KA+EYVE
Sbjct: 1787 RVIHLSLAAKRMKFFFKRYLDYEKQHGSPETVQAVKEKAVEYVE 1830



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 148/347 (42%), Gaps = 66/347 (19%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG--------DIVGG 1265
            + V   +LS++++ K +RL LRP                   F+H G         +VG 
Sbjct: 325  QKVKACILSVHRQTKTVRLTLRP------------------NFLHPGLPLSQLSTSLVGT 366

Query: 1266 RISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFV-----KCKVL 1317
             +  +   V G   + G       G + F   K++  S+    ++  +F+     KC+++
Sbjct: 367  VLENV--PVQGFFKKAGATFKLKDGSLAFARFKHL--SNSKKSFNPEKFLPGKTHKCRII 422

Query: 1318 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1377
            ++S        V LSL+  +              ++ P     +  DL P  +VQG V  
Sbjct: 423  DLSPM---DDLVLLSLKEKI--------------INAP---FLQYRDLQPGQLVQGKVLA 462

Query: 1378 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437
            +   G  + ++  +   V L +L+D  ++ PEK+F +G  + GRVLS  P  K++ +TLK
Sbjct: 463  LRPFGVLVEVTDSIKGVVPLLHLADVQLKHPEKKFHLGDEIKGRVLSCIPSMKKLVLTLK 522

Query: 1438 TSDSRTASQSEINNLSNLHVGDIVI---GQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
                +T   S++  +++       +   G I ++   G  +   N N+ GL     L  D
Sbjct: 523  ----KTLVNSDLPVITSYRAAKPQLQAHGFISKITEVGCIVGFYN-NVRGLVPKGRLGVD 577

Query: 1495 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1541
              +++++++  G+ +KV ++     + R+ L  K       A + +M
Sbjct: 578  CSEDLKSVFYLGQVIKVTVVNCSPNQERLLLSYKPMMDSEPAGSAEM 624



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 37/247 (14%)

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVG 1064
            Y   + P+K+F  GQ++ A V+   SS +                +   + KK      G
Sbjct: 1186 YKVLRHPEKKFKVGQALSAIVVGTDSSRSL----------LILSLTGIHKLKK------G 1229

Query: 1065 SLVQAEITEIKP---LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            ++   ++ ++ P   L +RL F     G++ I  + D  S V       FK  + V   +
Sbjct: 1230 TITMGKVMKVIPDVGLTVRLPFECA--GQVSIFHIQDSYSAVP---LEGFKPEKIVKCCV 1284

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNE 1177
            ++        K  + ELS++ S  T S    K+   E     DV  G+ + GYV  V+++
Sbjct: 1285 LS-------TKGTMMELSLRLSR-TKSNYQEKVEDREVTSLDDVKEGELLRGYVKSVEHQ 1336

Query: 1178 WALLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
               ++IS  +  Q+ +   S Y  S  + + +    G  +T  VLS+NKE+ L+ L L P
Sbjct: 1337 GVFISISSTVVGQVQYQCVSQYLVSNQKLYNKYLRKGMLLTTKVLSVNKEQNLVELSLLP 1396

Query: 1237 FQDGISD 1243
               G  D
Sbjct: 1397 QDTGKQD 1403


>gi|50303899|ref|XP_451897.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641029|emb|CAH02290.1| KLLA0B08239p [Kluyveromyces lactis]
          Length = 1729

 Score =  384 bits (987), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 352/1201 (29%), Positives = 576/1201 (47%), Gaps = 142/1201 (11%)

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            GC + F   +  F P  +  +       +   +GQSV   IL+ + E  RI  S K S  
Sbjct: 607  GCVISFFNNIKAFVPNKEISEAFVKKPQEHLRLGQSVLVKILNHDFERNRIIASCKISAE 666

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 893
            SS+      E  ++ + I               ++  +I    +  + ES D G+  V+ 
Sbjct: 667  SSSKQKSAIESLVVGKSI---------------IDAIVIEKTKDSVIVESKDSGLRGVIY 711

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
                SD    I  ++ +   ++  S ++  +LD      + ++S K   I    +     
Sbjct: 712  TGHLSD--DRIEQNRASQKKLKINSEVRGLVLDKDIRTHVFNMSCKKSLIKDAEDGTLPL 769

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFP 1011
                 K K +     G  ++V+     V  N  ++ L LP Y      A   D +  K  
Sbjct: 770  SFSDIKNKDKTEPMHGYVKSVSDRGVFVAFNGKFVGLVLPSY-----AAETRDIDIHK-- 822

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLL-LLKAISETETSSS-------KRAKKKSSYDV 1063
             K ++N QSV  TV  L +     R LL +LK  ++ +  +S       K  K  S + +
Sbjct: 823  -KYYIN-QSV--TVYLLRTDEEHERFLLTILKQKTDVKKINSSVINPVDKSIKDLSDFTI 878

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 1121
            G + +A IT +K  +L +      HGRI I+EV D   ++ E     S +K   +++ R+
Sbjct: 879  GKVTKATITSVKKNQLNVTLADNVHGRISISEVFDSFEDIKEQKAPLSVYKKNDSLSVRV 938

Query: 1122 IA----KSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
            I     KS K         KS L ELS KPS LT S +  K L    D +  Q   G++ 
Sbjct: 939  IGFHDIKSRKFLPISHTTSKSHLVELSAKPSSLT-SPVSEKKL---KDFTPEQTTFGFIN 994

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQ-EFQRRFHIGKAVTGHVLSINKEKKLLR 1231
               N+ A LTI+  +KA+L I + + E  +     + ++ IG AV   V SI+ E   L 
Sbjct: 995  NYSNDTAWLTITPTVKAKLPIFEISDEGHDFSLPIEEKYPIGTAVRVTVKSIDTEHDSLV 1054

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
            +  R      S     IS       I EGD++  R+  +      +++ +G  + G    
Sbjct: 1055 VSAR------SHAISSISE------IKEGDVLPARVISVQDTY--VLLSLGKDVTGVSFI 1100

Query: 1292 TELKNICVSDPLSGYDEGQ--FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
            T+  +         YD  +   V   VL +         + LSLRSS    S  + + +S
Sbjct: 1101 TDALDDYSLSLKDVYDSKKKNIVSATVLNVDI---DNNKINLSLRSS----SPKDRTIIS 1153

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
            +             +L    IV+G+VK++T KG FI LS  L A V +S L+D +++  +
Sbjct: 1154 S------------SELKRGDIVRGFVKSITDKGVFISLSSVLQAFVPVSKLTDAFIKDWK 1201

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1469
            K F  G+ V G+V++ +    RV +TL+ S+      + + + S+++VGDI  G +K V 
Sbjct: 1202 KFFRRGQSVVGKVVNCDN-DDRVLLTLRESEVN-GQLNVLKSYSDINVGDIFQGSVKNVT 1259

Query: 1470 SYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             +G+F+ ++ T N+ GL H SE+++  +DN++ ++  G+KVK  +LK + EK++ISLG+K
Sbjct: 1260 DFGVFVKLDGTVNVTGLAHKSEVADAKIDNLQNLFGEGDKVKAIVLKTNPEKKQISLGLK 1319

Query: 1529 SSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQI 1588
            +SYF N                 E+  +    +  E     V D+D++ EDG     A  
Sbjct: 1320 ASYFTN-----------------EKPETVEEGNEEEEELEGVDDLDIDMEDGQKESDASD 1362

Query: 1589 ESRASVPPLEVNLDDEQ------------------PDMDNGISQNQGHTDEAKTIDEKNN 1630
            +        +  +DD Q                  P   +G+S + G    A  +D+  +
Sbjct: 1363 KDEDKDEDQDEIMDDAQFGHSDSEAEDTTRPKNSAPVSTDGLSLSTGFDWTASILDQAQD 1422

Query: 1631 RHAKKKEKEE-------REQEIRAAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKY 1681
                 +E E+       ++++ +  +++ ++ +   P +  +FERL+  +PNSS VW+ Y
Sbjct: 1423 EEESSEEDEDFIKSRKQKKKKTQIVQDKTVDINTRIPESVGDFERLIMGNPNSSVVWMNY 1482

Query: 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741
            MAF L +++VEKAR I ERAL+TIN REE+EKLNIW+A  NLEN +G   EE V  VF +
Sbjct: 1483 MAFHLQLSEVEKAREIVERALKTINFREESEKLNIWIASLNLENTFGT--EETVEDVFTK 1540

Query: 1742 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-E 1799
            A QY D   +H+ LL +Y+ +E+ + A EL     KKF      +W+   + L+     +
Sbjct: 1541 ACQYMDSFTMHMKLLSIYQMSEKIEKAKELFKITAKKFGSEKVSIWVAWGEFLIDNNLID 1600

Query: 1800 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859
                V+  +L SLP   HI+ + + A LEF  G  ++GRS+FEG+L++ PKR DLW++Y+
Sbjct: 1601 EAHEVLGNSLKSLPTRNHIEVVRKFAQLEFSKGDPEQGRSLFEGLLADAPKRVDLWNVYI 1660

Query: 1860 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
            DQEI+ G+      LFER I+  +  K+ KF F K+L++E+   +++ ++YVK KA EYV
Sbjct: 1661 DQEIKHGEKSKAEDLFERVITKKITRKQAKFFFNKWLQFEEQKDDQKLVDYVKAKAAEYV 1720

Query: 1920 E 1920
            +
Sbjct: 1721 K 1721



 Score =  178 bits (451), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 205/768 (26%), Positives = 351/768 (45%), Gaps = 90/768 (11%)

Query: 128 LKNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPILDNEIEA 177
           +K ++ G  + G +  +++ +L I L  GL G          + +  + LD  ++++ E 
Sbjct: 111 MKQMTKGTIVLGQIQSISKHELKISLVDGLHGYVSLTDISEQMTKILENLDESMESDDEK 170

Query: 178 NEDNL---------------LPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
           NED+                LP +   F +GQ + C+V Q +   +    +K+ LS+  S
Sbjct: 171 NEDSEYDSSDDESDITTPKELPDLNKYFKIGQWLRCMV-QNNSALESNKNKKLDLSIEPS 229

Query: 220 LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLL 279
           ++      + + +   L   +KSIEDHG IL  G+ + TGF+ + ++ E S +   PG++
Sbjct: 230 VV-NVFEDDDLAKNCPLQCSLKSIEDHGAILDIGIENLTGFISKKDIPEFSSL--LPGMV 286

Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
               V    R+ + V ++ D   ++   TK  K  SID +VPG  +    Q+I  +GV+ 
Sbjct: 287 FLATVTK--RSGRTVNVNLD---LASKNTKVEKISSIDAIVPGQSIDFLPQTITNHGVIG 341

Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL---FVDPTSRAVGLTLNPYL- 395
                 T  + + H  N F   + K+ Y+    VNARIL    V    +   ++  P++ 
Sbjct: 342 KAFGLITAFLPLPH-SNFFTVEDLKHHYSIGDLVNARILATTIVKSGDKVAVVSTQPHII 400

Query: 396 -LHNRAPPSHV----KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD--VAEE 448
            LH +   +       VG I+D   V   D              S   YV+I++  V + 
Sbjct: 401 SLHPKLQETEALESFPVGYIFDSCTVKGRD--------------SQFFYVSINNEQVGQI 446

Query: 449 EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVI 507
            + K  +    G+ V+ RILG+ +++ L T     +  +      SD+  G V+   +++
Sbjct: 447 HLSKAGETEPTGT-VKARILGYNNVDKLYTLTSDPALLDVKYLRSSDIPAGEVLSACEIV 505

Query: 508 AVDSFGAIVQ-FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS-KRITVTH 565
            V   G  ++ F    KA  P  H+S+  +V P +KFK+G+++  RVL V S  R+TVT 
Sbjct: 506 TVSGKGIELKIFNDQFKAFVPPLHISDTRLVYPERKFKIGSKVKGRVLNVDSVGRVTVTL 565

Query: 566 KKTLVKSKLAILSSYAEATD-------RLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
           KK++V +    ++   +  D        L T G +   + +GC + F+N ++ F P  E+
Sbjct: 566 KKSIVNADEESVTLVCKNDDIQTVESQELKTIGTVEIFKPNGCVISFFNNIKAFVPNKEI 625

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLV 673
                 +P     +GQ V  +I++      RI  S  +     S+     + LV   S++
Sbjct: 626 SEAFVKKPQEHLRLGQSVLVKILNHDFERNRIIASCKISAESSSKQKSAIESLVVGKSII 685

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDN 732
             +V   T ++V+V     G  +G I T HL+D  +E     +  +K   E  + LVLD 
Sbjct: 686 DAIVIEKTKDSVIVESKDSGL-RGVIYTGHLSDDRIEQNRASQKKLKINSEV-RGLVLDK 743

Query: 733 E--SSNLLLSAKYSLINSAQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           +  +    +S K SLI  A+   LP   SD  +      +HGYV ++ + G FV F G+ 
Sbjct: 744 DIRTHVFNMSCKKSLIKDAEDGTLPLSFSDIKNKDKTEPMHGYVKSVSDRGVFVAFNGKF 803

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS-LKQ 832
            G    S A + +  D+ K YY+ QSV   +L  + E  R  L+ LKQ
Sbjct: 804 VGLVLPSYAAETRDIDIHKKYYINQSVTVYLLRTDEEHERFLLTILKQ 851



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 36/197 (18%)

Query: 756  ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 815
            +S +    +V G+V +I + G F+     L  F P SK  D    D  K +  GQSV   
Sbjct: 1154 SSELKRGDIVRGFVKSITDKGVFISLSSVLQAFVPVSKLTDAFIKDWKKFFRRGQSVVGK 1213

Query: 816  ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG--SELKWVEGFI 873
            +++ +++  R+ L+L++S                            NG  + LK      
Sbjct: 1214 VVNCDND-DRVLLTLRESEV--------------------------NGQLNVLKSYSDIN 1246

Query: 874  IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 926
            +G + +G V    DFGV V  +   +V G     ++A A +++       G  ++A +L 
Sbjct: 1247 VGDIFQGSVKNVTDFGVFVKLDGTVNVTGLAHKSEVADAKIDNLQNLFGEGDKVKAIVLK 1306

Query: 927  VAKAERLVDLSLKTVFI 943
                ++ + L LK  + 
Sbjct: 1307 TNPEKKQISLGLKASYF 1323



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            + + S++K G +V+G V ++   G  +     ++A  P+  +++  I    K F+ G  +
Sbjct: 1151 IISSSELKRGDIVRGFVKSITDKGVFISLSSVLQAFVPVSKLTDAFIKDWKKFFRRGQSV 1210

Query: 550  VFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 607
            V +V+   +  R+ +T +++ V  +L +L SY++     I  G +  +   G FV+    
Sbjct: 1211 VGKVVNCDNDDRVLLTLRESEVNGQLNVLKSYSDINVGDIFQGSVKNVTDFGVFVKLDGT 1270

Query: 608  -GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
              V G A +SE+         +++  G  VK  ++ + P  ++I+L
Sbjct: 1271 VNVTGLAHKSEVADAKIDNLQNLFGEGDKVKAIVLKTNPEKKQISL 1316



 Score = 48.9 bits (115), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 19/270 (7%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHF-----GLPSFTGFLPRNNLAENSGIDVKPGLLL 280
            S+  ++EG VL A V S++D   +L       G+   T  L   +L+     D K   ++
Sbjct: 1064 SISEIKEGDVLPARVISVQDTYVLLSLGKDVTGVSFITDALDDYSLSLKDVYDSKKKNIV 1123

Query: 281  QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
               V ++D     + LS     +     KD   IS   L  G +V   V+SI + GV +S
Sbjct: 1124 SATVLNVDIDNNKINLS-----LRSSSPKDRTIISSSELKRGDIVRGFVKSITDKGVFIS 1178

Query: 341  FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR- 399
              +     V +  L + F   +WK  + + + V  +++  D   R + LTL    ++ + 
Sbjct: 1179 LSSVLQAFVPVSKLTDAF-IKDWKKFFRRGQSVVGKVVNCDNDDRVL-LTLRESEVNGQL 1236

Query: 400  ---APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
                  S + VGDI+  S     D G+ + LD     V+       S+VA+ ++  L+  
Sbjct: 1237 NVLKSYSDINVGDIFQGSVKNVTDFGVFVKLD---GTVNVTGLAHKSEVADAKIDNLQNL 1293

Query: 457  YKEGSCVRVRILGFRHLEGLATGILKASAF 486
            + EG  V+  +L     +   +  LKAS F
Sbjct: 1294 FGEGDKVKAIVLKTNPEKKQISLGLKASYF 1323



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 8/138 (5%)

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1458
            ++SD  +  PE++F IG  V GRVL+V+ +  RV VTLK S      +S      N  + 
Sbjct: 529  HISDTRLVYPERKFKIGSKVKGRVLNVDSVG-RVTVTLKKSIVNADEESVTLVCKNDDIQ 587

Query: 1459 DI------VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
             +       IG ++  +  G  I+  N N+       E+SE  V   +   R G+ V VK
Sbjct: 588  TVESQELKTIGTVEIFKPNGCVISFFN-NIKAFVPNKEISEAFVKKPQEHLRLGQSVLVK 646

Query: 1513 ILKVDKEKRRISLGMKSS 1530
            IL  D E+ RI    K S
Sbjct: 647  ILNHDFERNRIIASCKIS 664


>gi|392597567|gb|EIW86889.1| hypothetical protein CONPUDRAFT_115715 [Coniophora puteana RWD-64-598
            SS2]
          Length = 1457

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 357/1235 (28%), Positives = 588/1235 (47%), Gaps = 170/1235 (13%)

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            ++ S I P ++V   +  I   G  V+ LG   G       VD         + VGQ V+
Sbjct: 325  TNVSSILPGTLVQSLITAISPEGINVQVLGFFDG------TVDDAHLPSGTKFKVGQKVK 378

Query: 814  SNILDV--NSETGRITLSLKQSCCS--STDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
              +L     S   ++ L+L     S  S DA   Q           LQSS        + 
Sbjct: 379  CRVLYAIPASSPPKLVLALSDHIISLVSQDAENEQ-----------LQSS--------YP 419

Query: 870  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSV 919
             G I+  V   KV       V V       + GFI   Q A   V S          G++
Sbjct: 420  IGTILDDVKVAKVEGERGLTVAV----QPGLAGFIHISQTADDRVPSLSASSGPWRCGTL 475

Query: 920  IQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
             +A ++     +R++ LS K +V   +F +A                 D+ V + +   V
Sbjct: 476  HRARVIGHHIFDRVLQLSSKPSVLEQKFVQAG----------------DIAVGEVMKGSV 519

Query: 979  EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLL 1038
            + + E  L +S+      + + +       K P K+F  G SV   V+ +       R++
Sbjct: 520  KKLTETALFISISGNADGVIWPNHYADIALKHPSKRFKPGGSVKCRVLTVDPERK--RVV 577

Query: 1039 LLLKAI---SETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 1095
            L  K     SE    SS    K     VG +V A + ++    L+L+F       + + E
Sbjct: 578  LTAKKTLVDSELPIISSFEDAK-----VGMVVHAVVFKVFEKGLQLEFFNNVKAFVPVRE 632

Query: 1096 VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1155
             ++    + +     F +G+ V  RII      D   S +        + +V +  S   
Sbjct: 633  ASEGTGTLTDA----FPVGKVVKVRII----NIDTDTSRI--------VASVRQAASSFK 676

Query: 1156 FEECDVS---IGQRVTGYV---YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR 1209
                DVS   +G  V+G +   +K++   +L  I       L  L S+   + + + +  
Sbjct: 677  ATAGDVSQVEVGNEVSGTIAELHKLNAVVSLKPIDVRALVSLKNLASSRN-TTVAQLKGT 735

Query: 1210 FHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
              IG  V   V+ S N EK  +    +P     S K   +S   M+T +  G +VGGR+ 
Sbjct: 736  VAIGDEVHELVIVSRNSEKGFVIAACKPKSKTASHKIGPLS---MET-VAPGQVVGGRV- 790

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTE-LKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
             +  G+ G +V++ P + G +H T+   N     P    D    +K  V+E+ +      
Sbjct: 791  -LRQGLRGAIVKLTPKISGFLHPTDSCDNYETGTPFPPKD--SVLKATVIEVDKE---NN 844

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
             ++LS+R S        S D+S+ VD   + +   ED+     ++G+VK+V   G F+ML
Sbjct: 845  QLDLSMRPS------RLSGDVSSVVD---REINSFEDIKRGDTLRGFVKSVADHGLFVML 895

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD-SRTASQ 1446
             R +DA+V +  L D YV+  +  F   +LV GR+LSV+P +K+VE+T ++ D +R A+ 
Sbjct: 896  GRHVDARVQIKELFDEYVKDWKPRFKANQLVKGRILSVDPENKKVEMTFRSGDLNRNATN 955

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH---VDNIETIY 1503
                 L++LH G  V G+IKR+E+YGLFI +E + + GLCH SELS++    VD     +
Sbjct: 956  GL--TLNDLHEGQKVKGRIKRIEAYGLFIEVEGSKISGLCHKSELSDNKDADVDVALRTF 1013

Query: 1504 RAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1563
            R G+ V+  I  +D  KR+IS G+K SYF         S+E+  DE+    G+ +  +L 
Sbjct: 1014 REGDTVQAMIKSIDVSKRKISFGLKPSYF---------SAEDVDDESGASDGAADSPALG 1064

Query: 1564 ------ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQG 1617
                  +   V  +D   E  DG     A  E  +     ++++D   P     ISQN G
Sbjct: 1065 VVEQDDDEQMVDPEDAGPEDSDGNEEDGAGEEEDSESEGDQMDIDLAPP----SISQNVG 1120

Query: 1618 HTDE-------------------AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-- 1656
               +                   A  +D++++           E++ +  +++++++D  
Sbjct: 1121 RNAQPVPSASLKLDGFNWFNGANANGVDDESSNSEDSDSDGGEERKKKRKKKQVIQQDLT 1180

Query: 1657 ------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE 1710
                  AP +  +FERL+  SPNSS++WI+YM+F L +++VEKAR IA RA++TI  REE
Sbjct: 1181 AEMHTKAPESNADFERLLLGSPNSSYLWIQYMSFQLKLSEVEKAREIARRAIETIGFREE 1240

Query: 1711 NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADE 1770
             EKLN+ +A  NLEN YG   +E++   F+ A +  D K VHL L  +++++E+++ A+E
Sbjct: 1241 QEKLNVCIALLNLENTYGT--DESLENAFKDAARRNDSKTVHLQLASIFDQSEKHEKAEE 1298

Query: 1771 LLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829
               +  KKF  S KVW    +  LK+ + E  + ++ R+L SL + KH+K IS+ A LE+
Sbjct: 1299 QYKRTCKKFGQSSKVWSLFCEYYLKRGEVEQARKLLPRSLQSLEKRKHLKTISKFAQLEY 1358

Query: 1830 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK 1889
            K G  +RG++++EGI+  +PKR DLWS+Y+D E    ++  +R +FER ++  +  +K K
Sbjct: 1359 KLGDPERGKTIYEGIVDSHPKRWDLWSVYMDMEAGQQNIQSLRNIFERVLTHKMTSRKAK 1418

Query: 1890 FLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            + FKK+L+YE+  G+EE  + VK KA+E+ ++ L 
Sbjct: 1419 YFFKKWLDYERRFGDEEGADNVKSKAVEWTQAALG 1453



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 228/915 (24%), Positives = 385/915 (42%), Gaps = 127/915 (13%)

Query: 54  FPRGGGHSLTQRERDEIHAE----VDAEFEAVERG--LHKKNKKKKKKTERKANETVDDL 107
           FPRGGG +LT  E   I AE     DAE  A  +     KKN K+KK    +  +     
Sbjct: 46  FPRGGGTTLTPLEVKSIRAEGAREADAELFAAPKSKRPRKKNDKEKKLDPAQKRDVA--- 102

Query: 108 GSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG-------- 159
                             +  K ++ GMK+ G +  V    L++ LP  L          
Sbjct: 103 --------------RVEHLNYKRLTPGMKILGRIHSVRPLALIVSLPNQLMAHVPITQVT 148

Query: 160 --LARAADALDPILDNEIEANEDNL-------LPTIFHVGQLVSCIVL------------ 198
               R  +++D   D + E  E          L  +F+ GQ V  +V             
Sbjct: 149 SQFTRHLESMDENEDEDEEEEEGAEAKNETPELHDLFYPGQFVRAVVTNVYAPGVSEVSG 208

Query: 199 --QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
             ++ DD  +  KR + LSL    +  G+    +Q G  LTA VKS+EDHGY+L  G+P 
Sbjct: 209 LGRVRDDIAKASKR-VELSLVPEDVNAGVQKSDLQLGFTLTAAVKSVEDHGYLLDLGVPD 267

Query: 257 FTGFLPRNNLAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG 313
            +GF+   +  +    D K    GLL   V++     R    +S D    +     ++  
Sbjct: 268 VSGFMSFQDAQKGRFGDKKLPIGGLLDVAVLKKSGNGRTCT-VSLDAQLFATSSLSEVTN 326

Query: 314 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
           +S   ++PG +V + + +I   G+ +  L +F GTVD  HL +          +   +KV
Sbjct: 327 VSS--ILPGTLVQSLITAISPEGINVQVLGFFDGTVDDAHLPSG-------TKFKVGQKV 377

Query: 374 NARILFVDPTSRA--VGLTLNPYLL-------HNRAPPSHVKVGDIYDQSKVVRVDRGLG 424
             R+L+  P S    + L L+ +++        N    S   +G I D  KV +V+   G
Sbjct: 378 KCRVLYAIPASSPPKLVLALSDHIISLVSQDAENEQLQSSYPIGTILDDVKVAKVEGERG 437

Query: 425 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGIL 481
           L + +         ++ IS  A++ V  L      ++ G+  R R++G    + +     
Sbjct: 438 LTVAVQP---GLAGFIHISQTADDRVPSLSASSGPWRCGTLHRARVIGHHIFDRVLQLSS 494

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           K S  E       D+  G V+KG V  +      +   G    +    H ++  +  P K
Sbjct: 495 KPSVLEQKFVQAGDIAVGEVMKGSVKKLTETALFISISGNADGVIWPNHYADIALKHPSK 554

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           +FK G  +  RVL V  + KR+ +T KKTLV S+L I+SS+ +A   ++ H  + K+ + 
Sbjct: 555 RFKPGGSVKCRVLTVDPERKRVVLTAKKTLVDSELPIISSFEDAKVGMVVHAVVFKVFEK 614

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPAS-RRINL 652
           G  + F+N V+ F P  E     G   +  + VG+VVK RI+      S I AS R+   
Sbjct: 615 GLQLEFFNNVKAFVPVREASEGTGTL-TDAFPVGKVVKVRIINIDTDTSRIVASVRQAAS 673

Query: 653 SFMMKPTRVSEDDLVKLGSLVSG-VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
           SF      VS+   V++G+ VSG + ++   NAVV   +     +  +  ++LA    + 
Sbjct: 674 SFKATAGDVSQ---VEVGNEVSGTIAELHKLNAVV--SLKPIDVRALVSLKNLASS-RNT 727

Query: 712 TV--MKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVH 766
           TV  +K  +  G E  +L+++  ++E   ++ + K     ++ ++ P     + P  VV 
Sbjct: 728 TVAQLKGTVAIGDEVHELVIVSRNSEKGFVIAACKPKSKTASHKIGPLSMETVAPGQVVG 787

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV-RSNILDVNSETGR 825
           G V      G  V+   +++GF   + + D    +    +    SV ++ +++V+ E  +
Sbjct: 788 GRVLRQGLRGAIVKLTPKISGFLHPTDSCDNY--ETGTPFPPKDSVLKATVIEVDKENNQ 845

Query: 826 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
           + LS++ S  S   +S +                     E+   E    G  + G V   
Sbjct: 846 LDLSMRPSRLSGDVSSVVDR-------------------EINSFEDIKRGDTLRGFVKSV 886

Query: 886 NDFGVVVSFEEHSDV 900
            D G+ V    H D 
Sbjct: 887 ADHGLFVMLGRHVDA 901



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 118/252 (46%), Gaps = 12/252 (4%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVKP-GLLLQ 281
            LS+ETV  G V+   V      G I+    P  +GFL   +  +N  +G    P   +L+
Sbjct: 775  LSMETVAPGQVVGGRVLRQGLRGAIVKL-TPKISGFLHPTDSCDNYETGTPFPPKDSVLK 833

Query: 282  GVVRSIDRTRKVVYLSSDPDTVSKCVTK--DLKGISIDLLVPGMMVSTRVQSILENGVML 339
              V  +D+    + LS  P  +S  V+   D +  S + +  G  +   V+S+ ++G+ +
Sbjct: 834  ATVIEVDKENNQLDLSMRPSRLSGDVSSVVDREINSFEDIKRGDTLRGFVKSVADHGLFV 893

Query: 340  SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
                +    V I  L + +   +WK  +  ++ V  RIL VDP ++ V +T     L NR
Sbjct: 894  MLGRHVDARVQIKELFDEY-VKDWKPRFKANQLVKGRILSVDPENKKVEMTFRSGDL-NR 951

Query: 400  APPSHVKVGDIYDQSKVV-RVDR--GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEK 455
               + + + D+++  KV  R+ R    GL +++  + +S   + + +SD  + +V    +
Sbjct: 952  NATNGLTLNDLHEGQKVKGRIKRIEAYGLFIEVEGSKISGLCHKSELSDNKDADVDVALR 1011

Query: 456  KYKEGSCVRVRI 467
             ++EG  V+  I
Sbjct: 1012 TFREGDTVQAMI 1023



 Score = 41.6 bits (96), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 16/140 (11%)

Query: 187  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK----GLSLETVQEGMVLTAYVKS 242
            F   QLV   +L +D + K     K+ ++ R   L +    GL+L  + EG  +   +K 
Sbjct: 920  FKANQLVKGRILSVDPENK-----KVEMTFRSGDLNRNATNGLTLNDLHEGQKVKGRIKR 974

Query: 243  IEDHGYILHFGLPSFTGFLPRNNLAENSGIDV-------KPGLLLQGVVRSIDRTRKVVY 295
            IE +G  +       +G   ++ L++N   DV       + G  +Q +++SID +++ + 
Sbjct: 975  IEAYGLFIEVEGSKISGLCHKSELSDNKDADVDVALRTFREGDTVQAMIKSIDVSKRKIS 1034

Query: 296  LSSDPDTVSKCVTKDLKGIS 315
                P   S     D  G S
Sbjct: 1035 FGLKPSYFSAEDVDDESGAS 1054


>gi|254586193|ref|XP_002498664.1| ZYRO0G15730p [Zygosaccharomyces rouxii]
 gi|238941558|emb|CAR29731.1| ZYRO0G15730p [Zygosaccharomyces rouxii]
          Length = 1717

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 367/1241 (29%), Positives = 587/1241 (47%), Gaps = 154/1241 (12%)

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
            L+ LD E++ ++ S      +SA  L S       N V    V      GCF+ F G+L 
Sbjct: 578  LVGLDEENTKVISS-----YDSANALKS------ANEVTIATVQQFHTKGCFLTFFGKLK 626

Query: 787  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
            GF P ++  +           +GQ+V   +++V+ E  RI      +C  S D +  Q+ 
Sbjct: 627  GFLPNAEISEVFVRRPQDHLRLGQTVSVKLIEVDEERSRII----ATCKISNDLAAQQK- 681

Query: 847  FLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFIT 905
                                + +E  I G ++++  V E     +VV  ++ S + G I 
Sbjct: 682  --------------------ESIEEMIPGRTLVDVTVAEKTKDSLVVELKDLS-LRGVIY 720

Query: 906  HHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA 955
               L+ A +E           GS ++  ++D      + ++SLK   I   +E       
Sbjct: 721  VGHLSDARIEQNRASLKKIKIGSELKGLVIDKDVRTHVFNMSLKESLIKDAKEDLLPINY 780

Query: 956  QKKKRKREASKDLGVHQTVNAIVEIVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQK 1013
            Q  K K   +   G  ++++     V  N  ++ L LP Y        +S         K
Sbjct: 781  QDVKSKVPTTPMHGYIKSISEKGLFVAFNGKFVGLVLPSYAVESRDVDIS---------K 831

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLK----------AISETETSSSKRAKKKSSYDV 1063
             F   QSV A +  L +     R LL LK          + +E      +  K    + +
Sbjct: 832  TFYVNQSVTAYL--LRTDDEHERFLLSLKEPKNASNGKKSDAEIVNPVDENIKTSEDFTL 889

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARI 1121
            G +V+ ++  +K  +L +       GR+ + EV D  +  N  +   +NFK G  +  RI
Sbjct: 890  GRIVKGKVKAVKKNQLNIILADNIFGRVDVAEVFDHIEDINDPKQPLANFKKGDVIDVRI 949

Query: 1122 IA----KSNK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVY 1172
            I     KS+K       + K  + EL++KPS L  +E  +K +    DV + + V G++ 
Sbjct: 950  IGNHDVKSHKFLPITHQVGKGTVLELTVKPSKLKGNEFKAKDI---EDVKVDEEVLGFIN 1006

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLR 1231
               N    LT+S  LKA++  LD   + +EL +  +  F +G A    V  I+KE   + 
Sbjct: 1007 NHLNNSLWLTVSPRLKAKVSALDLVDDGAELSDNLEDSFPLGTAFKIRVTGIDKEHATIT 1066

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
               R             S +N++     G  V  RI K+      +++ +G  + G    
Sbjct: 1067 ATGRSH-----------SINNIKD-AQPGTKVPARILKVNEKY--VLLDLGSGVKGISFA 1112

Query: 1292 TE-LKNICVSDPLSGYD-EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
            T+ L +  +  P +  D + Q V   VL +         ++LSLRS      + +S    
Sbjct: 1113 TDALDDFSIPLPEAFKDKQNQIVSATVLLVDEE---NSRIKLSLRSPAAKTHAISSH--- 1166

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
                         EDL    IVQ  VK  T KG F+ LS  L+A V +S LSD Y++  +
Sbjct: 1167 -------------EDLKKGAIVQALVKGTTDKGVFVYLSSNLEAFVPVSKLSDSYIKEWK 1213

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1469
            K +   + V G+V++ +  S R+ +TL+ S+        +    ++ VGDI  G +K V 
Sbjct: 1214 KFYQPMQHVVGKVVNCDDDS-RILLTLRESEV-NGDLKILKGYDDIKVGDIFNGHVKNVT 1271

Query: 1470 SYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             +G+F+ +++T NL GL H +E++++   ++ +++  G++VK  I KV+ EKR+ISL +K
Sbjct: 1272 DFGVFVKLDDTVNLTGLAHRTEIADEAPQDLNSLFGVGDRVKAYITKVNAEKRKISLSLK 1331

Query: 1529 SSYFKNDAD-NLQMSSEEESDEAIEEVG---SYNRSSLLENSSVAVQDMDME--SEDGGS 1582
            +S F  + D N  +S   E+ E+ +EV     YN S          ++      S DG S
Sbjct: 1332 ASRFSKEEDVNNAVSEANEASESEDEVMEGVDYNHSESEAEPEEEDEEPKKPKVSSDGLS 1391

Query: 1583 LVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEERE 1642
            L  A  +  AS+      LD  QPD      +++  T   K+  ++N    K K  E++ 
Sbjct: 1392 LS-ADFDWTASI------LDQTQPDE-ESEDEDEDFTKSNKSKRQRN----KNKIVEDKT 1439

Query: 1643 QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1702
             EI           AP +  +FERL+   PNSS VW+ YMAF L +++V+KAR IAERAL
Sbjct: 1440 IEINTR--------APESVGDFERLILGDPNSSVVWMNYMAFQLQLSEVDKAREIAERAL 1491

Query: 1703 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1762
            +TIN REE EKLNIWVA  NLEN +G   +E +  +F+RA QY D   +H  LL +Y+ +
Sbjct: 1492 KTINFREELEKLNIWVALLNLENTFGT--DETLNDIFKRACQYMDSFTIHNKLLSIYQMS 1549

Query: 1763 EQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKF 1820
            E+   A +L     KKF      +W+   + L+ Q Q E  +A++ RAL  L +  HI  
Sbjct: 1550 EKFDEAADLFKATAKKFGSEKVSIWVSWGEFLISQNQPEEARAILTRALQILAKRNHIDV 1609

Query: 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880
            + + A LEF  G  +RGRS+FEG++++ PKR DLW++YLDQE++ GD   +  LFER + 
Sbjct: 1610 VRKFAQLEFNKGEPERGRSLFEGLIADVPKRIDLWNVYLDQEMKTGDKKKVEDLFERIVV 1669

Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
              L  K+ KF F K+L++E++  + +  EYVK KA+EY E+
Sbjct: 1670 KKLTRKQAKFFFNKWLQFEETQNDSKAEEYVKAKAIEYAEN 1710



 Score =  183 bits (465), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 225/849 (26%), Positives = 378/849 (44%), Gaps = 93/849 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERG-----LHKKNKKKKKKTERKANETVDDLG 108
           FPRGGG +LT  E  ++  E  +E    + G     +  +  KKKK T +    + +   
Sbjct: 34  FPRGGGSALTPLELKKVANEAASEVLFGDNGGDSEEVSSRPAKKKKTTTKPQATSAEGTN 93

Query: 109 SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAA---- 164
           ++       +       ++ K +     L G V+ +N+ DL +    G+ G         
Sbjct: 94  AVAAAAADDETFNVVEHMSFKTLKPNSYLLGQVSSINKNDLTVSFTDGISGFVTMTHISE 153

Query: 165 ------DALDPILD----------------NEIEANEDNLLPTI---FHVGQLVSCIVL- 198
                 + LD  +D                +E EA +   LP +   F +GQ + C V  
Sbjct: 154 QFTSILEQLDDKMDASDHEEDSDHDHSDDEDEAEARKSKELPDLNQYFQLGQWLRCRVTI 213

Query: 199 --QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
              +D  +K+  K++I LSL  S +    S E + +   +   VKS+EDHG IL  G+  
Sbjct: 214 NSAMDSGRKKKDKKRIELSLEPSEV-NSFSEEDLDKYSAVQCSVKSMEDHGAILDLGIEG 272

Query: 257 FTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS 315
            TGF+ + ++ +  G    PG + L  VV+   RT  V +     D  SK   K  +  S
Sbjct: 273 LTGFVSKKDIPQ--GWQCLPGSVFLANVVKKSSRTVNVNF-----DFRSKS-NKITQISS 324

Query: 316 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 375
           ID++VPG +V    Q I E GV+        G + I +    F     ++ +     +  
Sbjct: 325 IDVVVPGQVVDFMCQKITEQGVLGKVFGMLPGFLGI-NQSRIFKQEALRHTFAIGSNIKC 383

Query: 376 RILFVDPT---SRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 432
           RI+   P+    + + L++ P +L   +  S  +  D +    + +    LG        
Sbjct: 384 RIIAQLPSKSDEKTLILSILPNILSLESKWSKDEALDAFPVGHICQNCEVLG-------- 435

Query: 433 PVSTPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
             S   Y+ + D     V   +  +L +  K  S  RV  LG+  ++ L          E
Sbjct: 436 RDSEYIYLALDDERFGQVHLSKAGELVESSKNRSDARV--LGYNGVDKLYQLGTDPKLLE 493

Query: 488 GLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKV 545
                  D+  G +V G +++ V S G  ++  G   KA  PL H+S+  +V P +KFK+
Sbjct: 494 LRYLRAEDIPAGELVTGCEIVTVSSKGIELRLFGSQFKAFVPLLHISDIRLVYPERKFKI 553

Query: 546 GAELVFRVLGVKSK-RITVTHKKTLV---KSKLAILSSYAEA----TDRLITHGWITKIE 597
           G+++  RVL V ++ RI  T KK+LV   +    ++SSY  A    +   +T   + +  
Sbjct: 554 GSKVKCRVLSVDARGRIFATLKKSLVGLDEENTKVISSYDSANALKSANEVTIATVQQFH 613

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRIN 651
             GCF+ F+  ++GF P +E+       P     +GQ V  +++      S I A+ +I+
Sbjct: 614 TKGCFLTFFGKLKGFLPNAEISEVFVRRPQDHLRLGQTVSVKLIEVDEERSRIIATCKIS 673

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLE 709
            + +    + S ++++   +LV   V   T +++VV +  K  S +G I   HL+D  +E
Sbjct: 674 -NDLAAQQKESIEEMIPGRTLVDVTVAEKTKDSLVVEL--KDLSLRGVIYVGHLSDARIE 730

Query: 710 HATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINSAQQ--LP---SDASHIHPNS 763
                   IK G E   L++  +  +++  +S K SLI  A++  LP    D     P +
Sbjct: 731 QNRASLKKIKIGSELKGLVIDKDVRTHVFNMSLKESLIKDAKEDLLPINYQDVKSKVPTT 790

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            +HGY+ +I E G FV F G+  G    S AV+ +  D+SKT+YV QSV + +L  + E 
Sbjct: 791 PMHGYIKSISEKGLFVAFNGKFVGLVLPSYAVESRDVDISKTFYVNQSVTAYLLRTDDEH 850

Query: 824 GRITLSLKQ 832
            R  LSLK+
Sbjct: 851 ERFLLSLKE 859



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 130/299 (43%), Gaps = 18/299 (6%)

Query: 543  FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
            F +G     RV G+  +  T+T        +   +++  +A         I K+ +    
Sbjct: 1045 FPLGTAFKIRVTGIDKEHATIT-----ATGRSHSINNIKDAQPGTKVPARILKVNEKYVL 1099

Query: 603  VRFYNGVQGFAPRSELGLDPGCEP---SSMYHVGQVVKCRIMSSIPASRRINLSF---MM 656
            +   +GV+G +  ++  LD    P   +      Q+V   ++     + RI LS      
Sbjct: 1100 LDLGSGVKGISFATD-ALDDFSIPLPEAFKDKQNQIVSATVLLVDEENSRIKLSLRSPAA 1158

Query: 657  KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716
            K   +S  + +K G++V  +V   T   V VY+ +    +  +P   L+D   +    K 
Sbjct: 1159 KTHAISSHEDLKKGAIVQALVKGTTDKGVFVYLSSN--LEAFVPVSKLSD--SYIKEWKK 1214

Query: 717  VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
              +P       +V  ++ S +LL+ + S +N   ++      I    + +G+V N+ + G
Sbjct: 1215 FYQPMQHVVGKVVNCDDDSRILLTLRESEVNGDLKILKGYDDIKVGDIFNGHVKNVTDFG 1274

Query: 777  CFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             FV+      LTG A R++  D    DL+  + VG  V++ I  VN+E  +I+LSLK S
Sbjct: 1275 VFVKLDDTVNLTGLAHRTEIADEAPQDLNSLFGVGDRVKAYITKVNAEKRKISLSLKAS 1333



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 5/181 (2%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            + +H D+K G +V+  V      G  V     ++A  P+  +S+  I +  K ++    +
Sbjct: 1163 ISSHEDLKKGAIVQALVKGTTDKGVFVYLSSNLEAFVPVSKLSDSYIKEWKKFYQPMQHV 1222

Query: 550  VFRVLGVKS-KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            V +V+      RI +T +++ V   L IL  Y +     I +G +  +   G FV+  + 
Sbjct: 1223 VGKVVNCDDDSRILLTLRESEVNGDLKILKGYDDIKVGDIFNGHVKNVTDFGVFVKLDDT 1282

Query: 609  VQ--GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            V   G A R+E+  +   + +S++ VG  VK  I       R+I+LS  +K +R S+++ 
Sbjct: 1283 VNLTGLAHRTEIADEAPQDLNSLFGVGDRVKAYITKVNAEKRKISLS--LKASRFSKEED 1340

Query: 667  V 667
            V
Sbjct: 1341 V 1341



 Score = 57.4 bits (137), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 100/448 (22%), Positives = 194/448 (43%), Gaps = 54/448 (12%)

Query: 1105 ENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
            E L   F IG  +  RIIA+      +K+ +  LSI P++L++    SK      D ++ 
Sbjct: 369  EALRHTFAIGSNIKCRIIAQLPSKSDEKTLI--LSILPNILSLESKWSK------DEALD 420

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF---HIGKAVTGHVL 1221
                G++ +                ++   DS Y    L +   RF   H+ KA  G ++
Sbjct: 421  AFPVGHICQ--------------NCEVLGRDSEYIYLALDD--ERFGQVHLSKA--GELV 462

Query: 1222 SINKEKKLLRL-----VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
              +K +   R+     V + +Q G   K +++     +  I  G++V G     +S  G 
Sbjct: 463  ESSKNRSDARVLGYNGVDKLYQLGTDPKLLELRYLRAED-IPAGELVTGCEIVTVSSKGI 521

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
             +   G      V    + +I +  P   +  G  VKC+VL +    RG   +  +L+ S
Sbjct: 522  ELRLFGSQFKAFVPLLHISDIRLVYPERKFKIGSKVKCRVLSVD--ARG--RIFATLKKS 577

Query: 1337 LDGMSSTNSSDLST-DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            L G+   N+  +S+ D     K        S N +    V+   +KGCF+    KL   +
Sbjct: 578  LVGLDEENTKVISSYDSANALK--------SANEVTIATVQQFHTKGCFLTFFGKLKGFL 629

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1455
              + +S+ +V  P+    +G+ V+ +++ V+    R+  T K S+   A Q E  ++  +
Sbjct: 630  PNAEISEVFVRRPQDHLRLGQTVSVKLIEVDEERSRIIATCKISNDLAAQQKE--SIEEM 687

Query: 1456 HVGDIVIG-QIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKI 1513
              G  ++   +       L + +++ +L G+ +V  LS+  ++ N  ++ +     ++K 
Sbjct: 688  IPGRTLVDVTVAEKTKDSLVVELKDLSLRGVIYVGHLSDARIEQNRASLKKIKIGSELKG 747

Query: 1514 LKVDKEKRR--ISLGMKSSYFKNDADNL 1539
            L +DK+ R    ++ +K S  K+  ++L
Sbjct: 748  LVIDKDVRTHVFNMSLKESLIKDAKEDL 775



 Score = 45.1 bits (105), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 19/146 (13%)

Query: 128  LKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIF 187
            +K+   G K+   + +VNEK +++ L  G++G++ A DALD   D  I       LP  F
Sbjct: 1077 IKDAQPGTKVPARILKVNEKYVLLDLGSGVKGISFATDALD---DFSIP------LPEAF 1127

Query: 188  --HVGQLVSCIVLQLDDDKKEIGKRKIWLSLR--LSLLYKGLSLETVQEGMVLTAYVKSI 243
                 Q+VS  VL +D++       +I LSLR   +  +   S E +++G ++ A VK  
Sbjct: 1128 KDKQNQIVSATVLLVDEENS-----RIKLSLRSPAAKTHAISSHEDLKKGAIVQALVKGT 1182

Query: 244  EDHGYILHFGLPSFTGFLPRNNLAEN 269
             D G  ++    +   F+P + L+++
Sbjct: 1183 TDKGVFVYLS-SNLEAFVPVSKLSDS 1207


>gi|351715635|gb|EHB18554.1| RRP5-like protein [Heterocephalus glaber]
          Length = 1809

 Score =  382 bits (980), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 385/1450 (26%), Positives = 652/1450 (44%), Gaps = 168/1450 (11%)

Query: 54   FPRGGGHSLTQRER--------DEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
            FPRGG   + + E+        D +  ++  E E+ +R   KKN+K   KT++   E  +
Sbjct: 8    FPRGGTRKIHKSEKSYQQLVEHDNLF-DISNEEESTKR---KKNQKGPAKTKKLKIEKRE 63

Query: 106  DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
                  G  +  KL      ++++++  GM++ G V EVNE +LVI LP GL+G  +  +
Sbjct: 64   G-----GKSVKEKL----EILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTE 114

Query: 166  ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
              D      NE  A E+ L     LP +F  G LV C+V  +   ++  GK+ + LSL  
Sbjct: 115  ICDAYTKKLNEQVAQEEPLKDLLRLPELFSPGMLVRCVVSSVSITER--GKKSVKLSLNP 172

Query: 219  SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
              + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 173  KNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVVGTRAFLPLQKAQEYIRQKNKGAK 232

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            +K G  L  ++  +  +  V  LS +   +S  +    +  S++ L+PG++V  +VQ + 
Sbjct: 233  LKVGQYLNCIIEEVKSSGGVASLSIEQSAISTAIATQEQNWSLNNLLPGLVVKAQVQKVT 292

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
            + G+ L+FLT+FTG VD  HL +    T + N     + V A IL V P +RAV L+L P
Sbjct: 293  QFGLTLNFLTFFTGLVDFMHLDSKKVGTYFSN-----QAVRACILCVHPRTRAVRLSLRP 347

Query: 394  YLLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
              L    P + +    +G +     V       G    +    +   AY  +S +++ + 
Sbjct: 348  IFLQPGRPLTQLSCQHLGAVMKDVPVQGFFNKAGATFKLKDGAL---AYARLSHLSDSKN 404

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
                + +K G+  + RI  +  ++GLA   L+ S  E     + D+K G VVKG V+ + 
Sbjct: 405  AFRPETFKPGNMHKCRITDYSPMDGLALLSLRTSVIEAQYLRYHDIKTGAVVKGTVLTMR 464

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
             FG +V+    V+ L P  H+++  +  P KK++VGAE+  RVL    ++K++ +T KKT
Sbjct: 465  PFGMLVKVGEQVRGLVPATHLADILMKNPEKKYQVGAEVKCRVLLCDPEAKQLIMTLKKT 524

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV SKL +++ Y +A   L THG I + + +GC VRFYN VQG  P+ ELG     +P  
Sbjct: 525  LVTSKLPVITCYEDAKPGLQTHGVIHRAKDYGCIVRFYNDVQGLVPKHELGAQCIPDPEK 584

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV----VTPNA 684
             ++ GQVVK  +++  PA  R+ LSF +      +++ V  G      V V    + P A
Sbjct: 585  AFYAGQVVKVAVLNCEPAKERMLLSFKLLSDPEPKNERVGCGQKKRKDVGVGQAGLLPVA 644

Query: 685  VVVYVIAKGYSKGTIPT---EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
              V+V    + +  +     E   D L+ A +  ++  P   F     L +  +N  L  
Sbjct: 645  EQVFVFL--FPEQLVDVKVLEKTKDGLQVAVLPHNI--PA--FLPTPHLSDHVANGPLVH 698

Query: 742  KYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
            ++     A Q P   S I P  ++ G+V +I + G FV+F   L+G AP++   D    +
Sbjct: 699  RWLQAVEAGQDPKSFSEIQPGMLLVGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTN 758

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC---SSTDASFMQEHFLLEE--KIAML 856
             S  +  GQ+V + + +V+ E  R+ LSL+ S C        S +     LEE   +  L
Sbjct: 759  PSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCRLGGPASGSLLLLSQCLEELQGVRSL 818

Query: 857  QSSKHNGSELKWVEGFIIGSVIEGKVHE-SNDFGVVVSFEEHSDVYGFITHHQLAGATVE 915
             SS+ +   ++ +     G V+   V E S D  VV +     D+    + +  AG  VE
Sbjct: 819  MSSR-DSVLVQALAEMTPGMVLNLVVQEVSEDGSVVFTGAPVRDLVLRASRYHRAGQEVE 877

Query: 916  SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVN 975
            SG   +A IL V      V +SL+   +        NR+A K K+         VHQ   
Sbjct: 878  SGQKKKAVILYVDMLGLEVHVSLRKELV--------NRKAWKLKKG-------SVHQ--- 919

Query: 976  AIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTA 1034
            A V+ ++E++ V S+ E  H + ++  S  N T +F  ++   GQSV   V+        
Sbjct: 920  ATVQHLEESFAVASVGETGHLVAFSLASHLNDTFRFDSEKLQVGQSV-CLVLKTAEPGVT 978

Query: 1035 GRLL---------LLLKAISETETSSSKRA---------KKKSSYDVGSLVQAEITEIKP 1076
            G LL         +L +   ++E                +KK    +G +V   +  +KP
Sbjct: 979  GLLLAVEGPAARRVLRQPCKDSEMGDEGEGADPALAAGPRKKHGLAIGDVVTGTVKSVKP 1038

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1136
              + +    G  G +H + V D+         +  K+G+TVTAR+I   +     K+F  
Sbjct: 1039 THVVVTLEDGVMGCVHASHVLDEVPEGAAPT-ATLKVGKTVTARVIGGRD----VKTF-N 1092

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFIL 1194
            EL  K     ++   +  + +      GQ VT ++  Y V  +W  + I+  ++ ++ +L
Sbjct: 1093 ELE-KDGHTVLNTYSASPVEKIQQYRAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLL 1151

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
             ++     L+   ++F IG+A+   V+  +  K  L L L             I    ++
Sbjct: 1152 LTSLSFKVLKHPDKKFQIGQALRATVVGPDSSKPFLCLSL-------------IGPHKLK 1198

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                +G++  GR+ K+     GL V       G V    + +     PL  +   + V+ 
Sbjct: 1199 ----KGEVAMGRVVKVAPS-EGLTVAFPFGRTGTVSVFHVSDSYSERPLQDFSPQKVVR- 1252

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
                                          + +  + V+ P   +  I D+    +++G+
Sbjct: 1253 -----------------------------TNPETKSKVEDP--EINSILDIKEGQLLRGF 1281

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKR 1431
            V++V   G  + L   ++     S++S   +       K  P G+L+  RVL ++P    
Sbjct: 1282 VRSVEPSGVLLGLGPSVEGLARFSHVSQCSLPKKGLYSKYLPEGRLLTARVLRLDPSKNL 1341

Query: 1432 VEVTLKTSDS 1441
            VE++    D+
Sbjct: 1342 VELSFLPGDT 1351



 Score =  244 bits (624), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 134/328 (40%), Positives = 203/328 (61%), Gaps = 16/328 (4%)

Query: 1598 EVNLDDEQPDMDNGISQNQGHTDE--AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1655
            +V LD   P +      +    DE       +K ++  ++ EK++ E+E+   EE L + 
Sbjct: 1487 DVGLDTLTPALPPRGENSDSEEDEKPPHATQQKKSKKERELEKQKAEKELSRIEEALRDP 1546

Query: 1656 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1714
               P + D+F+RLV SSP+SS +W++YMAF L   +++KAR++AERAL+TI+ R   E  
Sbjct: 1547 GRQPESADDFDRLVLSSPSSSILWLQYMAFHLQATEIDKARAVAERALRTISFRGAREAE 1606

Query: 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1774
             +  A             E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL  +
Sbjct: 1607 RVGGA------------AESLSKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNR 1654

Query: 1775 MIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833
            M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+ G 
Sbjct: 1655 MLKRFRQEKSVWIKYGAFLLRRGQAGASHRVLQRALECLPAKEHMDVITKFAQLEFQLGD 1714

Query: 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1893
            A+R R++FE +LS YPKRTD+WS+Y+D  I+ G    +R +FER I L+L PKKMKF FK
Sbjct: 1715 AERARAIFENMLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLNLAPKKMKFFFK 1774

Query: 1894 KYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            +YL+YEK  G E+ +  VK KA+EYVE+
Sbjct: 1775 RYLDYEKQHGSEKDVRAVKAKALEYVEA 1802



 Score = 63.2 bits (152), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 138/317 (43%), Gaps = 32/317 (10%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
            +AV   +L ++   + +RL LRP           +S  ++   + +  + G       + 
Sbjct: 325  QAVRACILCVHPRTRAVRLSLRPIFLQPGRPLTQLSCQHLGAVMKDVPVQG-----FFNK 379

Query: 1274 VGGLV-VQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
             G    ++ G   Y R+ H ++ KN    +    +  G   KC++ + S           
Sbjct: 380  AGATFKLKDGALAYARLSHLSDSKNAFRPE---TFKPGNMHKCRITDYS----------- 425

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
                 +DG++  +   L T V    ++L +  D+    +V+G V  +   G  + +  ++
Sbjct: 426  ----PMDGLALLS---LRTSV-IEAQYL-RYHDIKTGAVVKGTVLTMRPFGMLVKVGEQV 476

Query: 1392 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1451
               V  ++L+D  +++PEK++ +G  V  RVL  +P +K++ +TLK +   T+    I  
Sbjct: 477  RGLVPATHLADILMKNPEKKYQVGAEVKCRVLLCDPEAKQLIMTLKKTLV-TSKLPVITC 535

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
              +   G    G I R + YG  +   N ++ GL    EL    + + E  + AG+ VKV
Sbjct: 536  YEDAKPGLQTHGVIHRAKDYGCIVRFYN-DVQGLVPKHELGAQCIPDPEKAFYAGQVVKV 594

Query: 1512 KILKVDKEKRRISLGMK 1528
             +L  +  K R+ L  K
Sbjct: 595  AVLNCEPAKERMLLSFK 611



 Score = 46.2 bits (108), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 46/87 (52%)

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
            G+  +   ++ P M++ G+VK++   G F+     L      + +SD +V +P   F  G
Sbjct: 707  GQDPKSFSEIQPGMLLVGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTNPSDHFVEG 766

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSR 1442
            + V  +V +V+   +R+ ++L+ SD R
Sbjct: 767  QTVVAKVTNVDEEKQRMLLSLRLSDCR 793



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
            + S +  G +++G +K ++ YG+F+    + L GL   + +S+  V N    +  G+ V 
Sbjct: 712  SFSEIQPGMLLVGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTNPSDHFVEGQTVV 770

Query: 1511 VKILKVDKEKRRISLGMKSS 1530
             K+  VD+EK+R+ L ++ S
Sbjct: 771  AKVTNVDEEKQRMLLSLRLS 790


>gi|449550992|gb|EMD41956.1| hypothetical protein CERSUDRAFT_147388 [Ceriporiopsis subvermispora
            B]
          Length = 1482

 Score =  382 bits (980), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 294/947 (31%), Positives = 484/947 (51%), Gaps = 79/947 (8%)

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 1068
            K PQK+F  G S+   ++ +  +    R  + L A      S+    +K     VG +  
Sbjct: 573  KHPQKRFKPGASIKCRILVVDPA----RKRIALTAKKTLLDSTLPIIRKFEDAQVGLVTH 628

Query: 1069 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 1128
            A + +     L+++F  G    + + E ++   + V +L   F +G+ VT RII      
Sbjct: 629  AVVFKTTDKILQVEFYNGLKAVVPLREASE---SAVTSLPEAFPVGKPVTVRIITV---- 681

Query: 1129 DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1188
            D + S      I  S+   S      + +   V IG  V G +  V  +  +LT+     
Sbjct: 682  DTETS-----RITASIRQASPTYKSAVTDISGVEIGNTVEGTISDVRKDQIVLTLQPTQV 736

Query: 1189 AQLFILDSAYEPSELQ--EFQRRFHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKT 1245
              L  L++      +   + + R  IG  +   V+ S N EK  + +   P      DK 
Sbjct: 737  TALLSLNNLANRRNVSVAQLRTRLKIGDKLQELVVVSRNPEKGFVLVASSP-----KDKV 791

Query: 1246 VDISNDNMQ-TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS-DPL 1303
              +  +++    I  G +VGGR+ + +    G +V++   + G +H T+  +   S  P 
Sbjct: 792  ALVPKNSLSLDTIQVGQLVGGRVLRHVRQ--GALVKLTQSISGVLHPTDTCDDYESGTPF 849

Query: 1304 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1363
               D    +K  V+ + +  R    + LS RSS    +  N   L+       + L  ++
Sbjct: 850  PPVD--SIIKAVVIAVDKEKR---QLTLSTRSSR--FNPDNRKALAD------RELVGLD 896

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
             LSP   V+G++K+V   G F+ML R +DA+V +  L D +V+  +  F + +LV GR++
Sbjct: 897  ALSPGDSVRGFIKSVAEHGLFVMLGRNIDARVQIKELFDEFVKDWKSRFTVNQLVKGRIV 956

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1483
            SV+   K+VE++ ++ D  T S S    L++L  G  + G++KRVE YGLFI IE + L 
Sbjct: 957  SVDREKKQVEMSFRSGDI-TKSASTKLTLADLSEGQKINGRVKRVEEYGLFIEIEGSKLS 1015

Query: 1484 GLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            GLCH SELS++   ++      +R G+ VK KIL +D EKRRISLG+K SYF  +  +L+
Sbjct: 1016 GLCHKSELSDNKDADVTLALRSFREGDAVKAKILSIDVEKRRISLGLKPSYFTEE--DLE 1073

Query: 1541 MSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE--DGGSLVLAQIESRASVPPLE 1598
             S E+ + +  EE  ++    ++E +     ++D  SE  D    + ++ E+   V  ++
Sbjct: 1074 ASDEDGTSDDDEESHAFG---VIETAEATASEVDSGSEHSDAEEDIASEDEADGEVVNMD 1130

Query: 1599 VNLDDEQPDMDNGISQNQGHTDEAKTIDEK--------NNRH-----AKKKEKEEREQEI 1645
            V+++ +    D     N   T  A  +  K          +H     A   E +E +++ 
Sbjct: 1131 VDINLQSTGTDRPSVSNVTSTSNAAFLSLKEGFQWSVHGTQHEDVEMASSSEDDEDQEKT 1190

Query: 1646 RAA--------EERL---LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1694
                       E+ L   L    P +  +FER++  SPNSS++WI+YM+F L +++V+KA
Sbjct: 1191 SGKKKRKRKEIEQDLTADLHTKTPESNADFERVLLGSPNSSYLWIQYMSFQLQLSEVDKA 1250

Query: 1695 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1754
            R IA RAL TIN REE EKLN+W+A  NLEN YG   +E++   F+ A ++ D K VHL 
Sbjct: 1251 REIARRALGTINFREEQEKLNVWIALLNLENTYGT--DESLEATFKDAARHNDSKTVHLR 1308

Query: 1755 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLP 1813
            +  + E++++ + A+E   K  KKF  S KVW    +  L++ + E  + ++ R+L SL 
Sbjct: 1309 MAVILEQSDKIEKAEEQYKKTCKKFSQSSKVWTLFGEHYLRRGKLEEARQLLPRSLQSLE 1368

Query: 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1873
            + KH+K IS+ A  E+K G  +RG+++FEGI+  +PKR DLWSIY+D E   G +  +R 
Sbjct: 1369 KRKHLKTISKFAQFEYKLGDPERGKTLFEGIVDSHPKRWDLWSIYMDMEATQGAIGNLRN 1428

Query: 1874 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            LF R ++L +   K K  FKK+L+ E+ +G+EE    VK KA+E+ +
Sbjct: 1429 LFNRVLALKMTSHKAKSFFKKWLDLERRLGDEEGAAAVKAKAIEWTQ 1475



 Score =  168 bits (426), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 206/857 (24%), Positives = 354/857 (41%), Gaps = 106/857 (12%)

Query: 54  FPRGGGHSLTQRE----RDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGS 109
           FPRGGG SLT  E    R E   E + E         K   K ++K++    E  D    
Sbjct: 50  FPRGGGTSLTPLEVKALRAEAVQEANEELFDSPDAAQKPANKSRRKSDVSGKEKKDS-KD 108

Query: 110 LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP 169
             GD I          +  K +  GMK+   V  V    L++ +P  L        A  P
Sbjct: 109 RKGDTI------RVEHLNYKRVEVGMKILAQVVSVEPLALIVSMPNQLF-------AHVP 155

Query: 170 I--LDNEIEANEDNL-----------------------LPTIFHVGQLVSCIVLQL---- 200
           I  + +E+    + +                       L  +F  GQ V  +V  +    
Sbjct: 156 ITHISSELTERLEKMGEDDEENSEDEETEEAGSARVPDLVELFKPGQYVRAVVTTVHAPG 215

Query: 201 -----------DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYI 249
                      DD +K    R++ LS+    +  G++   V+ G  + A +KS+EDHGYI
Sbjct: 216 STDVSGLGRARDDVQK--ASRRVELSIVPEKVNGGVAKADVRPGFTMAAAIKSVEDHGYI 273

Query: 250 LHFGLPSFTGFLPRNNLAENSGIDVKP---GLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 306
           L+ G+P  +GFL   + A+    + K    G LL   V  +    +   ++ DP  +   
Sbjct: 274 LNLGVPEISGFLSFKDAAKCYPQNSKKLHVGQLLDVSVTKVAGNGRTCNVTVDPQEIHSS 333

Query: 307 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 366
              ++  ++   ++PG +V + + ++  +G+ L  L +F GTVD FHL    P  N    
Sbjct: 334 SISEISNVTS--VLPGALVQSLITAVHPDGLNLQVLGFFGGTVDQFHLLPGEPEVN---- 387

Query: 367 YNQHKKVNARILF----VDPTSRAVG-----LTLNPYLLHNRAPPSHVKVGDIY------ 411
           Y    KV AR+L+      P   A+      L+L+P         S   + D Y      
Sbjct: 388 YKVGTKVKARVLYDLHQSSPPRFALSLAEHVLSLSPKHTDGSKESSGSTLFDAYPVGCTL 447

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRIL 468
           D  +V+RV+   GL+  +  +P     +V IS V+++ +  L      +K G+  + R+ 
Sbjct: 448 DAVEVIRVESERGLITRV--SP-EVEGFVHISHVSDDHIPSLSSSSGTWKIGTTHKARVT 504

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
           G   L+G+    L+ S          +V+ G ++KG V  +      V   G V  +   
Sbjct: 505 GHFPLDGMLQLSLRPSILSQKFLQVGEVQVGEIIKGTVKKLTDSALFVSISGNVDGVVWP 564

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDR 586
            H ++  +  P K+FK GA +  R+L V    KRI +T KKTL+ S L I+  + +A   
Sbjct: 565 NHYADIILKHPQKRFKPGASIKCRILVVDPARKRIALTAKKTLLDSTLPIIRKFEDAQVG 624

Query: 587 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
           L+TH  + K       V FYNG++   P  E            + VG+ V  RI++    
Sbjct: 625 LVTHAVVFKTTDKILQVEFYNGLKAVVPLREASESAVTSLPEAFPVGKPVTVRIITVDTE 684

Query: 647 SRRINLSF-MMKPT---RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           + RI  S     PT    V++   V++G+ V G +  V  + +V+  +        +   
Sbjct: 685 TSRITASIRQASPTYKSAVTDISGVEIGNTVEGTISDVRKDQIVL-TLQPTQVTALLSLN 743

Query: 703 HLADHLEHATV-MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA---SH 758
           +LA+    +   +++ +K G +  +L+V+        +    S  +    +P ++     
Sbjct: 744 NLANRRNVSVAQLRTRLKIGDKLQELVVVSRNPEKGFVLVASSPKDKVALVPKNSLSLDT 803

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY--VGQSVRSNI 816
           I    +V G V   +  G  V+    ++G    +   D      S T +  V   +++ +
Sbjct: 804 IQVGQLVGGRVLRHVRQGALVKLTQSISGVLHPTDTCDDYE---SGTPFPPVDSIIKAVV 860

Query: 817 LDVNSETGRITLSLKQS 833
           + V+ E  ++TLS + S
Sbjct: 861 IAVDKEKRQLTLSTRSS 877



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 113/257 (43%), Gaps = 23/257 (8%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            GL+ ++ P + G VH + + +  +  P      G + K      +R V G F        
Sbjct: 460  GLITRVSPEVEGFVHISHVSDDHI--PSLSSSSGTW-KIGTTHKAR-VTGHF-------- 507

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
             LDGM       LS       +   ++ ++    I++G VK +T    F+ +S  +D  V
Sbjct: 508  PLDGMLQ-----LSLRPSILSQKFLQVGEVQVGEIIKGTVKKLTDSALFVSISGNVDGVV 562

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLS 1453
              ++ +D  ++ P+K F  G  +  R+L V+P  KR+ +T K +  DS   +   I    
Sbjct: 563  WPNHYADIILKHPQKRFKPGASIKCRILVVDPARKRIALTAKKTLLDS---TLPIIRKFE 619

Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
            +  VG +    + +     L +   N  L  +  + E SE  V ++   +  G+ V V+I
Sbjct: 620  DAQVGLVTHAVVFKTTDKILQVEFYN-GLKAVVPLREASESAVTSLPEAFPVGKPVTVRI 678

Query: 1514 LKVDKEKRRISLGMKSS 1530
            + VD E  RI+  ++ +
Sbjct: 679  ITVDTETSRITASIRQA 695



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 123/256 (48%), Gaps = 17/256 (6%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVKP-GLLLQ 281
            LSL+T+Q G ++   V      G ++     S +G L   +  ++  SG    P   +++
Sbjct: 799  LSLDTIQVGQLVGGRVLRHVRQGALVKL-TQSISGVLHPTDTCDDYESGTPFPPVDSIIK 857

Query: 282  GVVRSIDRTRKVVYLSS-----DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
             VV ++D+ ++ + LS+     +PD       ++L G+  D L PG  V   ++S+ E+G
Sbjct: 858  AVVIAVDKEKRQLTLSTRSSRFNPDNRKALADRELVGL--DALSPGDSVRGFIKSVAEHG 915

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + +         V I  L + F   +WK+ +  ++ V  RI+ VD   + V ++     +
Sbjct: 916  LFVMLGRNIDARVQIKELFDEF-VKDWKSRFTVNQLVKGRIVSVDREKKQVEMSFRSGDI 974

Query: 397  HNRAPPSHVKVGDIYDQSKVV-RVDR--GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRK 452
              ++  + + + D+ +  K+  RV R    GL ++I  + +S   + + +SD  + +V  
Sbjct: 975  -TKSASTKLTLADLSEGQKINGRVKRVEEYGLFIEIEGSKLSGLCHKSELSDNKDADVTL 1033

Query: 453  LEKKYKEGSCVRVRIL 468
              + ++EG  V+ +IL
Sbjct: 1034 ALRSFREGDAVKAKIL 1049



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 119/549 (21%), Positives = 222/549 (40%), Gaps = 74/549 (13%)

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLK----AISETETSSSKRAKKKS---SYDV 1063
            P+  +  G  V A V+     S+  R  L L     ++S   T  SK +   +   +Y V
Sbjct: 384  PEVNYKVGTKVKARVLYDLHQSSPPRFALSLAEHVLSLSPKHTDGSKESSGSTLFDAYPV 443

Query: 1064 GSLVQA-EITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            G  + A E+  ++    L  +      G +HI+ V+DD    + +    +KIG T  AR+
Sbjct: 444  GCTLDAVEVIRVESERGLITRVSPEVEGFVHISHVSDDHIPSLSSSSGTWKIGTTHKARV 503

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
                         + +LS++PS+L      S+   +  +V +G+ + G V K+ +    +
Sbjct: 504  TGH-----FPLDGMLQLSLRPSIL------SQKFLQVGEVQVGEIIKGTVKKLTDSALFV 552

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
            +IS ++     +  + Y    L+  Q+RF  G ++   +L ++  +K + L  +     +
Sbjct: 553  SISGNVDG--VVWPNHYADIILKHPQKRFKPGASIKCRILVVDPARKRIALTAK---KTL 607

Query: 1242 SDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1299
             D T+ I    ++ Q  +    +V     KIL       V+    L   V   E     V
Sbjct: 608  LDSTLPIIRKFEDAQVGLVTHAVVFKTTDKILQ------VEFYNGLKAVVPLREASESAV 661

Query: 1300 SDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1359
            +     +  G+ V  +++ +      T  +  S+R +    S T  S ++          
Sbjct: 662  TSLPEAFPVGKPVTVRIITVDTE---TSRITASIRQA----SPTYKSAVT---------- 704

Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGY---VESPEKEFPIG 1415
              I  +     V+G + +V      + L   ++ A + L+NL++     V        IG
Sbjct: 705  -DISGVEIGNTVEGTISDVRKDQIVLTLQPTQVTALLSLNNLANRRNVSVAQLRTRLKIG 763

Query: 1416 -KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1474
             KL    V+S  P    V V     D          +L  + VG +V G++ R    G  
Sbjct: 764  DKLQELVVVSRNPEKGFVLVASSPKDKVALVPKNSLSLDTIQVGQLVGGRVLRHVRQGAL 823

Query: 1475 ITIENTNLVGLCHVSELSEDH--------VDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
            + +  + + G+ H ++  +D+        VD+I         +K  ++ VDKEKR+++L 
Sbjct: 824  VKLTQS-ISGVLHPTDTCDDYESGTPFPPVDSI---------IKAVVIAVDKEKRQLTLS 873

Query: 1527 MKSSYFKND 1535
             +SS F  D
Sbjct: 874  TRSSRFNPD 882


>gi|410918265|ref|XP_003972606.1| PREDICTED: protein RRP5 homolog [Takifugu rubripes]
          Length = 1767

 Score =  381 bits (979), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 349/1354 (25%), Positives = 626/1354 (46%), Gaps = 142/1354 (10%)

Query: 128  LKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIE-ANEDNL- 182
            +KN+  GM L G V +V + ++ + LP GL+G   +   +D+   +L  +++ A+ +++ 
Sbjct: 82   IKNVREGMLLLGCVKDVADFEVTVSLPCGLQGFLSIRNISDSYTKMLSEQLDSADMEDIC 141

Query: 183  -LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
             LP +   G +V C V +LD  K   G   I LS+   L+ K L+  ++  GMVL+  V+
Sbjct: 142  SLPDLLCPGMIVRCAVAKLDTSKG--GNLSIQLSINPKLVNKALTTSSLNAGMVLSGCVE 199

Query: 242  SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
            S+EDHGYI+  G+     FLP+     N+  D+K G  +   V ++    +VV LS    
Sbjct: 200  SVEDHGYIVDIGIKGTNAFLPKKK-GPNNQEDLKVGQYVTSTVEAVKNEGRVVRLSVSQL 258

Query: 302  TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 361
              S+   +  +G ++  L+PG++V+  ++ + ++G+ +SFL+ FTG VD  H++      
Sbjct: 259  NSSQACIRSTQGWNLTNLLPGLLVNATIKKVTKHGLSVSFLSSFTGQVDFLHME-----P 313

Query: 362  NWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKV 416
               + Y +  +V A +L+V+P++R V L+L  YLL      +  PP   +VG++    K+
Sbjct: 314  KEASSYKEGDEVRACVLYVEPSTRLVALSLRSYLLQPGIRVDLCPPGDDRVGEVVKSCKM 373

Query: 417  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHL 473
              V    G +L++P     T A+   + + E + +  E +     E +C   RIL F  +
Sbjct: 374  TTVHHMSGAILELPD---KTMAFAHKNHLREPKAQLNENRLLAMPEHTC---RILDFSLM 427

Query: 474  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
            + +    L+ S  +   F + D++ G VV+G V  + + G +V     +K L P  H+S+
Sbjct: 428  DNIYFVSLRKSVIDKPFFRYHDLQAGQVVEGTVTVLLAHGMVVHLADHIKGLVPRTHLSD 487

Query: 534  FEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHG 591
              +  P KK+  G ++  RVL V+   K++ +T KK LV+S L +  + ++A    ++HG
Sbjct: 488  ILLKNPEKKYMEGMKVKCRVLSVEPEHKKLFLTRKKALVESSLPLFRTISDARPGCVSHG 547

Query: 592  WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            +I  I+  GC VRFYN V+G  P SEL  +P  +P   +++GQV+K +++       ++ 
Sbjct: 548  YIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISQPKDFFYIGQVLKTKVLQCDREKAKLL 607

Query: 652  LSF------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
            LSF        + T   E D  K+G  +   V    PN + V ++ +   +  +PT HL+
Sbjct: 608  LSFKGVMEGAAEQTAAPELD-CKVGEKLEAKVLKKMPNGLEVAILPEEI-RAYLPTMHLS 665

Query: 706  DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNS 763
            DHL +  ++   ++ G     L+ ++    N+ L+ K ++  S ++     D S I   +
Sbjct: 666  DHLSNCPLLWECLQEGDSISNLIYINRSHQNITLTKKPTIRWSLEEGVAAKDFSEIKVGT 725

Query: 764  VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
             + G++ NI+  G FV F   L G AP+S   D   +D   TY +GQ+V + + +++ E 
Sbjct: 726  QLFGWIKNIMPYGVFVEFPYGLVGLAPKSAMADRFISDTKTTYKLGQTVIAKVTNLDEEK 785

Query: 824  GRITLSLKQSCCSSTDASFMQEHFL-LEEKIAMLQSS-KHNGSELK-WVEGFIIGSVIEG 880
             R  ++LK S   S     +      L+E+ AM + S   + SEL+  +    +G  ++ 
Sbjct: 786  RRFLVTLKISEVISPVGDVLTRLINGLQERKAMTEMSLARDDSELRQQLAALSVGQRLKL 845

Query: 881  KVHESNDFGVV-VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
             V+ + D G   VS E H        HH + G  +  G  + A IL +      V +S+ 
Sbjct: 846  TVNTATDNGATFVSDELHGATIQASKHH-VTGMNLVPGQKVTAVILHIDLLSTCVHVSIL 904

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
            +  + + R  N            E SK         A VE + +++ V+ L    H    
Sbjct: 905  SRLLGKKRSLN------------EGSK-------YTATVEHINQDFAVIFLDNTAHLTVI 945

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS 1059
             + S  N     + +   G S+   ++        G  L+  +  +    +    ++K  
Sbjct: 946  QTSSHLNHTDIQELKL--GMSLTVELIEASCEKAHGLPLVAWERSAPKRQNVPSASQKGC 1003

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTV 1117
             +  G +VQA++  +KP  +++    G  G +H++EV D K ++ +        K+G TV
Sbjct: 1004 CF--GEVVQAKVKSVKPTLIQVTLEDGSTGTVHVSEVMDPK-DLCQGFLPTLSVKVGSTV 1060

Query: 1118 TARII----AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK 1173
            TAR+I    A S+    K   L  +SIK  + +                +G+ +T +V K
Sbjct: 1061 TARVIGGREASSHSKLDKSVALKSVSIKEHLNS--------------YKVGEEITCFVSK 1106

Query: 1174 VDNEWALLTISRH--LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
               +  +L ++ H  +   + +L     P      +  F +G+AV   V  + +  K  R
Sbjct: 1107 FHPDRKVLEVTTHPGVTGTVELLAMVTNPRNATHPESVFKVGQAVYAKV--VERSTKPQR 1164

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
             +L     G+             T + +G +  G +  I     GL+V++     G V  
Sbjct: 1165 FILS--LTGV-------------TKLEKGAVTLGMVVNI-DPQKGLLVKLPFGGMGTVAI 1208

Query: 1292 TELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1351
            T+L +    +PL GY + Q                      LR  L G    N+++  T 
Sbjct: 1209 TDLADAYRPNPLGGYSKNQI---------------------LRFFLLG----NNNEAKTV 1243

Query: 1352 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK- 1410
             D     +  +++L    I++GY+K+V   G FI LSR +  +  L + S  YV +  K 
Sbjct: 1244 KDP---EILSVDELKEGQIIRGYIKSVEKCGIFIRLSRSIVGRTELHH-STKYVCNNHKI 1299

Query: 1411 ---EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
                 P   L+  ++LS++   + V ++L   D+
Sbjct: 1300 LSEHLPPSTLITTKILSIDTEEESVSLSLLPKDT 1333



 Score =  288 bits (736), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 204/615 (33%), Positives = 321/615 (52%), Gaps = 75/615 (12%)

Query: 1359 LEKIEDLSPNMIVQGYVKNV-TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1417
            L  +  L    +  G V N+   KG  + L       V +++L+D Y     +  P+G  
Sbjct: 1169 LTGVTKLEKGAVTLGMVVNIDPQKGLLVKLPFGGMGTVAITDLADAY-----RPNPLGGY 1223

Query: 1418 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1477
               ++L       R  +    ++++T    EI ++  L  G I+ G IK VE  G+FI +
Sbjct: 1224 SKNQIL-------RFFLLGNNNEAKTVKDPEILSVDELKEGQIIRGYIKSVEKCGIFIRL 1276

Query: 1478 ENTNLVGLCHVSELSEDHVDNIETIYR----AGEKVKVKILKVDKEKRRISLGM------ 1527
              + +VG   +   S  +V N   I          +  KIL +D E+  +SL +      
Sbjct: 1277 SRS-IVGRTELHH-STKYVCNNHKILSEHLPPSTLITTKILSIDTEEESVSLSLLPKDTG 1334

Query: 1528 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM----ESEDGGSL 1583
            KS     ++  L +   EE     E     N+  L E+  V+ +        +  D G  
Sbjct: 1335 KSDVLP-ESLGLPLHLFEEEKTKCEVQKRNNKRKLSESEQVSKKKKKKKSKADGNDSGVE 1393

Query: 1584 V--------------------LAQIESRASVPPLEV--------NLDDEQPDMDNGISQN 1615
            V                    + + +S A +  L+V         L+  +P     +S  
Sbjct: 1394 VYFREEDDDDDDDAKKPQSGSIKETQSSAGLSRLQVAAGFSWDVGLNSLKP-----LSAV 1448

Query: 1616 QGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA--------PRTPDEFERL 1667
            Q      +   +K+N+ A+KK + E EQ  +AAE+ L++++A        P     FERL
Sbjct: 1449 QESESSDEEEPDKSNK-AQKKSRHELEQGKKAAEKALMQREAELMDPSLQPEDAAAFERL 1507

Query: 1668 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1727
            + +SPNSS +W++YMA  L    +E+AR++AERAL+TI+ REE EKLN+WVA  NLEN Y
Sbjct: 1508 LLASPNSSLLWLQYMAHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMY 1567

Query: 1728 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1787
            G   EE++ KVF+RALQ+C+P  V+  L  +Y ++E+ K A+ L   M+K+F+    VWL
Sbjct: 1568 GT--EESLKKVFERALQFCEPMPVYQQLADIYTKSEKMKEAESLYKTMVKRFRQHKAVWL 1625

Query: 1788 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1846
                 LL++ Q +   +++QRAL S+P  + +  I++ A LEF+ G A+RGR+MF+ +L+
Sbjct: 1626 SYGTFLLQRGQSDAANSLLQRALKSMPSKESVDVIAKFAQLEFRYGDAERGRTMFDKVLT 1685

Query: 1847 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906
             YPKRTDLWS+++D  I+ G    +R LF+R I LS+  KK+KF FK+YLEYEK  G  +
Sbjct: 1686 SYPKRTDLWSVFIDLMIKHGSQKDVRELFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQ 1745

Query: 1907 RIEYVKQKAMEYVES 1921
             ++ VK+KA+E+VES
Sbjct: 1746 SVQAVKEKAVEFVES 1760



 Score = 64.7 bits (156), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 120/277 (43%), Gaps = 25/277 (9%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            +  G +V G ++ +L+   G+VV +  H+ G V  T L +I + +P   Y EG  VKC+V
Sbjct: 450  LQAGQVVEGTVTVLLAH--GMVVHLADHIKGLVPRTHLSDILLKNPEKKYMEGMKVKCRV 507

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L +    +  F   L+ + +L              V++       I D  P  +  GY+ 
Sbjct: 508  LSVEPEHKKLF---LTRKKAL--------------VESSLPLFRTISDARPGCVSHGYIV 550

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             +   GC +     +   V LS LS   +  P+  F IG+++  +VL  +    ++ ++ 
Sbjct: 551  CIKDFGCIVRFYNDVKGLVPLSELSSEPISQPKDFFYIGQVLKTKVLQCDREKAKLLLSF 610

Query: 1437 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496
            K      A Q+    L +  VG+ +  ++ +    GL + I    +        LS DH+
Sbjct: 611  KGVMEGAAEQTAAPEL-DCKVGEKLEAKVLKKMPNGLEVAILPEEIRAYLPTMHLS-DHL 668

Query: 1497 DNIETIYRA---GEKVKVKILKVDKEKRRISLGMKSS 1530
             N   ++     G+ +   ++ +++  + I+L  K +
Sbjct: 669  SNCPLLWECLQEGDSIS-NLIYINRSHQNITLTKKPT 704



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 159/395 (40%), Gaps = 58/395 (14%)

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
            K  F   D+  GQ V G V  +     ++ ++ H+K    +  +      L+  ++++  
Sbjct: 442  KPFFRYHDLQAGQVVEGTVTVLLAHGMVVHLADHIKG--LVPRTHLSDILLKNPEKKYME 499

Query: 1213 GKAVTGHVLSINKEKKLLRLVLR--------PFQDGISDKTVDISNDNMQTFIHEGDIVG 1264
            G  V   VLS+  E K L L  +        P    ISD                G +  
Sbjct: 500  GMKVKCRVLSVEPEHKKLFLTRKKALVESSLPLFRTISDA-------------RPGCVSH 546

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
            G I  I     G +V+    + G V  +EL +  +S P   +  GQ +K KVL+  R   
Sbjct: 547  GYIVCIKDF--GCIVRFYNDVKGLVPLSELSSEPISQPKDFFYIGQVLKTKVLQCDREKA 604

Query: 1325 GTFHVELSLRSSLDGMS-STNSSDLSTDVDTPGKHLE-KIEDLSPNMIVQGYVKNVTSKG 1382
                  LS +  ++G +  T + +L   V   G+ LE K+    PN +            
Sbjct: 605  KLL---LSFKGVMEGAAEQTAAPELDCKV---GEKLEAKVLKKMPNGLE----------- 647

Query: 1383 CFIMLSRKLDAKVLLSNLSDGYVESP------EKEFPIGKLV-AGRVLSVEPLSKRVEVT 1435
               +L  ++ A +   +LSD     P      ++   I  L+   R      L+K+  + 
Sbjct: 648  -VAILPEEIRAYLPTMHLSDHLSNCPLLWECLQEGDSISNLIYINRSHQNITLTKKPTIR 706

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1495
                +   A      + S + VG  + G IK +  YG+F+      LVGL   S +++  
Sbjct: 707  WSLEEGVAA-----KDFSEIKVGTQLFGWIKNIMPYGVFVEFP-YGLVGLAPKSAMADRF 760

Query: 1496 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            + + +T Y+ G+ V  K+  +D+EKRR  + +K S
Sbjct: 761  ISDTKTTYKLGQTVIAKVTNLDEEKRRFLVTLKIS 795


>gi|146412582|ref|XP_001482262.1| hypothetical protein PGUG_05282 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1674

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 387/1485 (26%), Positives = 683/1485 (45%), Gaps = 172/1485 (11%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            ++PG++V   V  +   G   +  G V     L ++ E+++     KF +G  +  RV+ 
Sbjct: 301  IQPGIIVDALVAEITKEGITTKVFGMVDGTISLLNIGEYDLDSLNHKFTIGNSIKARVIA 360

Query: 556  VKSKRITVTHKKTLVKSKLA-ILS-SYAEATDRLITH--GWI-TKIEKHGC---FVRFYN 607
            V  K  T    K LV S L  ILS    E TD L     G++  ++E  G    ++    
Sbjct: 361  VLLKGGT----KKLVLSILPRILSLDSQENTDALEAFPIGFVFDQVEVIGLDSNYIFVST 416

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS--------SIPASRRINLSFMMKPT 659
            G   +  +  +      +    Y VG   K R++         ++    +I  +  M P 
Sbjct: 417  GTSSYHGQVHISKINQEKVIDDYFVGSKHKARVIGLNKFEGLLTLTMDPKIIDTKFMVPL 476

Query: 660  RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMK 715
            ++   + +  G ++      V P+   + V         +P EH++D    + E    + 
Sbjct: 477  QIPVGEYINGGEIIK-----VLPDGAGIQVKIFNDFDAFVPPEHMSDVRLVYPERKYKVG 531

Query: 716  SVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQQLPSDASHIHPNSVVHGYVCNIIE 774
            S IK         VL    S + ++ K +L+N    ++ S+             V   + 
Sbjct: 532  SKIKGR-------VLKVHGSKIFITLKKTLVNIEDDEVLSNFELAEIGLKTPATVEKFVH 584

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             G  V F G L  F P+++  +    D       GQ+V   I+D +    R+ ++LKQ+ 
Sbjct: 585  NGAIVSFFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIMDRDETQQRLIVTLKQND 644

Query: 835  CS----STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIGSVIEGKVHESNDFG 889
             +    S  +S +    ++E  I  ++ SK   S +  +EG  + G +  G++ + N   
Sbjct: 645  VTKAQQSAVSSVVPGKTIVEASI--VEKSKDKDSVIVEIEGSNLRGVIYAGQLSDGN--- 699

Query: 890  VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
                +E+   +Y            +++G  ++A +L+     R V LS K  FI+     
Sbjct: 700  ----YEQTRALY----------KKIQAGDKLEAVVLERDMKTRSVILSAKQSFIN----- 740

Query: 950  NSNRQAQKKKRKREASKDLGVHQTV-NAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
                   K  +      D+ V   V    ++ V    L ++       +  A  +  N  
Sbjct: 741  -----GAKNNQIPSQFSDVTVSDKVLTGYIKSVTNLGLFVAFGGKLTGLVLAKYATKNPN 795

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE--------TSSSKRAKKKSS 1060
            +   K+F   QSV   V+ L + +   R LL L +  ++E          S+K  K  + 
Sbjct: 796  EDILKRFYKNQSVSCRVIRLDNENK--RFLLSLDSEDKSEHGQELVNPVDSTK--KLITD 851

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVT 1118
            Y  G+  QA+I  IK  +L ++      GR+ IT+  +  S++ +     S F   + ++
Sbjct: 852  YTPGAKTQAKIKSIKGTQLNVQLADNLQGRLDITQCFEKWSDIKDKNQPLSQFHKDEILS 911

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIG---SKLLFEECDVSIGQRVTGYVYKVD 1175
             R++      D K      +S + S  T+ E+       + E  DV +G     +V  + 
Sbjct: 912  VRVLGYH---DAKNHTFLPISHRKSKNTILELTLLEKDPITEIKDVKVGSEHVAFVNNLA 968

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
              +  +++S  +K ++  +D + E S  ++ + R  IG A+   V  I++E K + L  R
Sbjct: 969  RGFVWVSMSLSVKGRVSFMDLSDEVSIFEDLENRLPIGAAIKAKVKQIDEEHKNIILTSR 1028

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
                     TV    D     +        R+ K+L     ++V++   +    + T+  
Sbjct: 1029 KH-------TVTKFED-----VELNKQYPARVLKVLPSF--VLVELAHDVVASSYITDAL 1074

Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1355
            N   S     +    +    VL + +  +    + + LR        TN +     VD  
Sbjct: 1075 NDYSSALNEVFHANDYTTATVLAVDKDSK---KISVLLR--------TNKA-----VD-- 1116

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
             K +  +EDL    +V+G+VKNV + G ++ L R +   V +S+LSD Y++  +K F   
Sbjct: 1117 -KVINSVEDLQRGDVVKGFVKNVANNGVYVSLGRSVHGLVRVSDLSDSYLKDWKKYFKQH 1175

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL---SNLHVGDIVIGQIKRVESYG 1472
            + V G+V++ +    RV +TLK S+       E+N L    +L  G++  G +++V  +G
Sbjct: 1176 QPVVGKVVNCKE-EGRVLITLKESEV----NGELNVLKKFEDLKEGEVYEGSVRQVTDFG 1230

Query: 1473 LFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1531
            +F+ ++ T N+ GLCH SE++++   +++ ++  G++VKVKIL ++ EK+++SLGMK SY
Sbjct: 1231 VFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEKKQLSLGMKVSY 1290

Query: 1532 FKNDA-------DNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLV 1584
            F  +A       D+++M+  EE+  +  E    +   ++E +  A  D+D + E+  ++V
Sbjct: 1291 FAPEATQNEDSDDDVEMAESEEATPSASESSDESDEEIVEGAFEADSDVDHDDEETSNVV 1350

Query: 1585 LAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK-------KKE 1637
                                  D   G+S N G    A  +D+               K+
Sbjct: 1351 --------------------AEDSGMGLSTN-GFDWTASILDQAQESDESSDDEDFVNKK 1389

Query: 1638 KEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            K++R  ++   +   +   AP++  +FER++  SPNSS +W+ YM+F L ++++EKAR I
Sbjct: 1390 KKKRSTKVVEDKTADINTRAPQSVSDFERMLIGSPNSSVLWMNYMSFQLQLSEIEKAREI 1449

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
             ERAL+TIN REE EKLNIW+A  NLEN +    +E++   F+R+ QY +P  +H  L  
Sbjct: 1450 GERALKTINYREEQEKLNIWIALLNLENTFDT--KESLEDTFRRSCQYMEPLTMHQKLAS 1507

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHK 1816
            +Y  +E+   A  L   MIKKF  +  VW+     LL +Q  + V   + +A+ +LP  +
Sbjct: 1508 IYTLSEKFDEATRLYKVMIKKFSKNVSVWVAYASYLLDRQMNDEVHEALAKAMQALPSKE 1567

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
             I+ + + A LEF  G  ++GRS+FEG++++ PKR DLW++YLDQEI+L D   +  LFE
Sbjct: 1568 SIEVVKKFAQLEFTKGDPEQGRSLFEGLMADAPKRIDLWNVYLDQEIKLNDKSKVENLFE 1627

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            R I+  L  K+ KF F K+L+YE+   +E+    VK KA EYVE+
Sbjct: 1628 RLITKKLTKKQAKFFFTKWLKYEEDQNDEKSGARVKAKAAEYVEA 1672



 Score =  180 bits (456), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 207/838 (24%), Positives = 371/838 (44%), Gaps = 89/838 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFE---AVERGLHKKNKKKKKKT-----ERKANET 103
           FPRGG   LT  E  EI  E   D  FE   A +R   +K+++ +KK+       K +E 
Sbjct: 17  FPRGGASVLTPLEVKEISNEAARDVLFESSTAAKRTSGEKSQQARKKSKKSKKNTKESEE 76

Query: 104 VDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA 163
           V+++ ++               ++ K +  G  + G +++VN+ DL I +   L G    
Sbjct: 77  VENVITI-------------ESLSFKKLFPGTTVLGQISKVNKLDLEIAIGDNLIGYVPI 123

Query: 164 ADALDPILD--------------------NEIEANEDNLLP---TIFHVGQLVSCIVLQL 200
           +   D I                            +DN LP   +IF  G+ +   V + 
Sbjct: 124 SSISDEITRKVELYQQESDSSEDEEEEGVTRTATMKDNELPDLQSIFKAGEWLRAKVTEA 183

Query: 201 DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF 260
           +  + +  K++I  ++    + + +  E +  G +L   V S+ED G IL+ G+   +GF
Sbjct: 184 ELSQSK--KKRIQFTIEPENVNESIEDEDLIPGNLLQCSVVSVEDRGVILNTGVSGKSGF 241

Query: 261 LPRNNLAENSGIDVKP---GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD-LKGIS- 315
           +    L+ N+ ID++    G ++   + +   TR +   S  P T+S  + K+ +  IS 
Sbjct: 242 ISNKELS-NANIDLQSLSEGYVMMTSIAAKPTTRTI---SLRPATLSVSLKKNKVSNISS 297

Query: 316 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNA 375
           +D + PG++V   V  I + G+         GT+ + ++   +   +  + +     + A
Sbjct: 298 VDAIQPGIIVDALVAEITKEGITTKVFGMVDGTISLLNI-GEYDLDSLNHKFTIGNSIKA 356

Query: 376 RILFV--DPTSRAVGLTLNPYLL-----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 428
           R++ V     ++ + L++ P +L      N        +G ++DQ +V+ +D      + 
Sbjct: 357 RVIAVLLKGGTKKLVLSILPRILSLDSQENTDALEAFPIGFVFDQVEVIGLDSNY---IF 413

Query: 429 IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           + +   S    V IS + +E   K+   Y  GS  + R++G    EGL T  +     + 
Sbjct: 414 VSTGTSSYHGQVHISKINQE---KVIDDYFVGSKHKARVIGLNKFEGLLTLTMDPKIIDT 470

Query: 489 LVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKV 545
                  +  G  + G ++I V  D  G  V+      A  P  HMS+  +V P +K+KV
Sbjct: 471 KFMVPLQIPVGEYINGGEIIKVLPDGAGIQVKIFNDFDAFVPPEHMSDVRLVYPERKYKV 530

Query: 546 GAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
           G+++  RVL V   +I +T KKTLV      +LS++  A   L T   + K   +G  V 
Sbjct: 531 GSKIKGRVLKVHGSKIFITLKKTLVNIEDDEVLSNFELAEIGLKTPATVEKFVHNGAIVS 590

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           F+  ++ F P++E+      +       GQ V  RIM      +R  L   +K   V++ 
Sbjct: 591 FFGNLRAFLPKNEISETFVKDAKDFLKKGQTVNVRIMDRDETQQR--LIVTLKQNDVTKA 648

Query: 665 DLVKLGSLVSG-------VVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKS 716
               + S+V G       +V+       V+  I     +G I    L+D + E    +  
Sbjct: 649 QQSAVSSVVPGKTIVEASIVEKSKDKDSVIVEIEGSNLRGVIYAGQLSDGNYEQTRALYK 708

Query: 717 VIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQ--QLPSDASHIH-PNSVVHGYVCNI 772
            I+ G + + +++  D ++ +++LSAK S IN A+  Q+PS  S +   + V+ GY+ ++
Sbjct: 709 KIQAGDKLEAVVLERDMKTRSVILSAKQSFINGAKNNQIPSQFSDVTVSDKVLTGYIKSV 768

Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
              G FV F G+LTG      A      D+ K +Y  QSV   ++ +++E  R  LSL
Sbjct: 769 TNLGLFVAFGGKLTGLVLAKYATKNPNEDILKRFYKNQSVSCRVIRLDNENKRFLLSL 826



 Score = 42.4 bits (98), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 125/299 (41%), Gaps = 40/299 (13%)

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG---ISIDLLVPGMMVSTRVQSIL 333
            G  ++  V+ ID   K + L+S   TV+K    +L       +  ++P  ++      ++
Sbjct: 1006 GAAIKAKVKQIDEEHKNIILTSRKHTVTKFEDVELNKQYPARVLKVLPSFVLVELAHDVV 1065

Query: 334  ENGVMLSFLTYFTGTVD-IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
             +  +   L  ++  ++ +FH           NDY       A +L VD  S+ + + L 
Sbjct: 1066 ASSYITDALNDYSSALNEVFH----------ANDY-----TTATVLAVDKDSKKISVLLR 1110

Query: 393  PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVA 446
                 N+A    +   +   +  VV+     G + ++ +  V      S    V +SD++
Sbjct: 1111 T----NKAVDKVINSVEDLQRGDVVK-----GFVKNVANNGVYVSLGRSVHGLVRVSDLS 1161

Query: 447  EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVK 503
            +  ++  +K +K+   V  +++  +  EG     LK S   G   ++    D+K G V +
Sbjct: 1162 DSYLKDWKKYFKQHQPVVGKVVNCKE-EGRVLITLKESEVNGELNVLKKFEDLKEGEVYE 1220

Query: 504  GKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            G V  V  FG  V+  G   V  LC    +++ + V     F  G  +  ++LG+ S++
Sbjct: 1221 GSVRQVTDFGVFVKLDGTLNVSGLCHHSEVADNKDVDVKALFGEGDRVKVKILGINSEK 1279


>gi|367010384|ref|XP_003679693.1| hypothetical protein TDEL_0B03530 [Torulaspora delbrueckii]
 gi|359747351|emb|CCE90482.1| hypothetical protein TDEL_0B03530 [Torulaspora delbrueckii]
          Length = 1715

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 347/1210 (28%), Positives = 588/1210 (48%), Gaps = 177/1210 (14%)

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            GC + F G + GF P S+  +           +GQ+V   ILDV+ E  RI      +C 
Sbjct: 610  GCHLLFFGGVRGFLPNSEISEVFVKRPEDHSRLGQTVMVKILDVDEERARII----ATCK 665

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV--VVS 893
             S+D +  Q+  +  +K+ + ++          V+  +     +  V E N+ G+  V+ 
Sbjct: 666  VSSDEAEEQKEAI--DKMVLGRT---------MVDVTVAEKTKDSLVVEMNNVGLRGVIY 714

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
                SD    I  ++     +  GS + A ++D     ++ + +LK   I   ++A +N+
Sbjct: 715  VGHLSD--SRIEQNRAQLKKIRIGSELNALVIDKDVRNQVFNATLKESLI---KDAQNNQ 769

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVE---IVKEN--YLVLSLPEY---NHSIGYASVSDY 1005
                 +  +E      +H  + +I +    V  N  ++ + LP Y   +  + +A     
Sbjct: 770  LPVTYEDIKEKKLTTAMHGYIKSISDKGLFVAFNGKFVGMVLPSYAVESRDVDFA----- 824

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA---------- 1055
                   K F   QSV A +  L +     R LL  K   E +  SS +A          
Sbjct: 825  -------KAFYINQSVAAYL--LRTDDANQRFLLTFK---EPKDKSSDKAASLAAINPVD 872

Query: 1056 ---KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK---SNVVENLFS 1109
               K+   + +G ++ A+I  +K  +L +      +GRI I+EV D     SN  E L  
Sbjct: 873  KSIKRLEDFKLGKVIDAKIKGVKKNQLNVILADNLYGRIDISEVFDSYEAISNPKEPL-G 931

Query: 1110 NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
              K    +  ++I   +    K          S + EL+++ SM+  S    + +    D
Sbjct: 932  GMKKDDIIRVKVIGNHDVRGHKFLPITHTVTNSTVLELTMRKSMINDSNCKVQSI---ED 988

Query: 1161 VSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSEL-QEFQRRFHIGKAVT 1217
            V++GQ V G+V  Y  +N W  LT+S  LKA++ + D   + S+  + F+ +F +G A+ 
Sbjct: 989  VAVGQEVLGFVNNYASNNLW--LTVSPTLKAKISVFDLTDDSSKYSKNFEEQFPLGSALK 1046

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI-----LS 1272
              V  I  E   + +  R          V I+ D     +  GD +  +I KI     L 
Sbjct: 1047 VSVKGIESEHGFITVTGRS-------HAVQIATD-----VKVGDKLPAKIVKINEKYILL 1094

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG---QFVKCKVLEISRTVRGTFHV 1329
             +GG VV I         F        S PL+   EG   Q +   V+ I         +
Sbjct: 1095 NLGGDVVGISFAPDALDDF--------SVPLNVAFEGMVNQIIPATVVSIDSE---NDKI 1143

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
            +LSLRS+                +   + ++  +D+    +VQ  VK VT KG F+ LS 
Sbjct: 1144 KLSLRSA----------------NPKTREIKSHKDIKQGDVVQALVKRVTDKGIFVYLST 1187

Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
             L+A V +S LSD +++  +K +   + V G+V++ E  S R+ +TL+ S+        +
Sbjct: 1188 NLEAFVPVSKLSDSFLKEWKKFYKPMQCVVGKVINSENDS-RILLTLRESEV-NGKLHVL 1245

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEK 1508
             N  ++ VGDI  G +K V  +G+F+ +++T N+ GL H SE+++   +++ +++  G++
Sbjct: 1246 KNYDDIKVGDIFEGNVKNVTDFGVFVKLDDTVNITGLAHRSEIADTAPEDLSSLFGNGDR 1305

Query: 1509 VKVKILKVDKEKRRISLGMKSSYF-KND-----ADNLQMSSEEESDEAIEEVGSYNRSSL 1562
            +K  ++KV+ +K++ISL +K+S+F K D     A+   +  + ++DEA+E+V  YN    
Sbjct: 1306 LKAYVIKVNPDKKQISLSLKASHFSKQDNGEKKAETQDVVEDNDADEAMEQV-VYNH--- 1361

Query: 1563 LENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEA 1622
              N S A  D++M+ ++             S P        ++P    G+S + G    A
Sbjct: 1362 --NESDAESDVEMDYQE-------------SAPA-------KKPQQSEGLSLSAGFDWTA 1399

Query: 1623 KTIDEKNNRHAKKKEKEEREQEIR--------AAEERLLE--KDAPRTPDEFERLVRSSP 1672
              +D+ +       +++  E              E++ ++    AP +  +FERL+  +P
Sbjct: 1400 SILDQAHEDEESSDDEDFTETNKSKRHRKKKHVVEDKTIDISTRAPESVVDFERLIMGNP 1459

Query: 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1732
            NSS +W+ YMAF L +++VEKAR IAERAL+TI+ REE EKLNIW+A  NLEN +G   +
Sbjct: 1460 NSSVIWMNYMAFQLQLSEVEKAREIAERALKTISFREEGEKLNIWIALLNLENTFGT--D 1517

Query: 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQ 1791
            E + +VF+RA QY D   +H  LL +Y+ +E+   A EL     KKF      +WL   +
Sbjct: 1518 ETLEEVFKRACQYMDSFTIHNKLLSIYQMSEKFDQAAELFKATAKKFGSEKVSIWLAWGE 1577

Query: 1792 RLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850
             LL Q Q +  ++++  AL +L +  HI+ + + A LEF  G A+RGRS+FEG++++ PK
Sbjct: 1578 FLLSQNQIQEARSLLSNALKALAKRSHIEVVRKFAQLEFAKGDAERGRSLFEGLMADAPK 1637

Query: 1851 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1910
            R DLW++YLDQEI+ G+   +  +FER I+  +  K+ KF F K+L++E+S  + +  EY
Sbjct: 1638 RIDLWNVYLDQEIKAGEKKKVENIFERVITKKITRKQAKFFFNKWLQFEESHEDLKSAEY 1697

Query: 1911 VKQKAMEYVE 1920
            VK KA+E+ E
Sbjct: 1698 VKSKAIEFAE 1707



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 321/1398 (22%), Positives = 586/1398 (41%), Gaps = 223/1398 (15%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKK---------------KTER 98
            FPRGG  +LT  E  ++  E  A  + +  G   +N  + +               KTE 
Sbjct: 38   FPRGGASALTPLELKQVANE--AANDVLFGGKSSENVDESRPKKRKKTSKKSKDEPKTEV 95

Query: 99   KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
               ETVD                    I  KN+  G  L G V+ + + +L +     + 
Sbjct: 96   DEEETVD----------------LVQHINFKNLKKGSVLLGQVSAIYKHELCVSFTDNIS 139

Query: 159  GLARA---ADALDPIL-----------------DNEIEANEDNL-------LPTI---FH 188
            G  +    ++ L+ +L                 D E ++++D         LP +   F 
Sbjct: 140  GFVKITNISEQLNAVLEDLDEDMEDEKVAQVKQDGEYDSSDDEATEKPSKELPDLKNYFQ 199

Query: 189  VGQLVSCIVL---QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
            +GQ + C V+     D ++K+  K++I LS+  S +    + E + +   +   VKS ED
Sbjct: 200  LGQWLRCSVVLNSTFDTERKKNQKKRIELSIAPSDV-NPFTEEDLDKHTAIQCSVKSTED 258

Query: 246  HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
            HG  L  G+  FTGF+P+  L     ++  PG +  G +    ++ + V ++ D +  + 
Sbjct: 259  HGATLDIGISGFTGFIPKKALPNFEQLE--PGSVFLGNISK--KSGRAVTVNLDFNAKNS 314

Query: 306  CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 365
             +T+     SID +VPG  +    + + +NG++       +G +    L+N F     K+
Sbjct: 315  KITQ---VSSIDAVVPGQAIDLLCEDVTKNGIIGKAFGLISGFLGTSQLRN-FSLEELKH 370

Query: 366  DYNQHKKVNARI---LFVDPTSRAVGLTLNPYLLH------NRAPPSHVKVGDIYDQSKV 416
             +     +  R+   L     ++ + L++ P++L        +       VG   D   V
Sbjct: 371  KFAVGSSIRCRVIASLLNRDATKVLILSILPHILSLETKLLEKESLESFPVGYKLDSCAV 430

Query: 417  VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK----KYKEGSCVRVRILGFRH 472
            +  D              S   YV +    EE + ++      +    S V  R+LG+  
Sbjct: 431  LGRD--------------SEFLYVAVD---EERIGQVHSSKIGEVNHQSSVAARVLGYNE 473

Query: 473  LEGLATGILKASAFEGLVFTHSDVKPGMVV-KGKVIAVDSFGAIVQ-FPGGVKALCPLPH 530
            ++ L          +       D+  G ++ K +V+ V S G  ++ F     A  P  H
Sbjct: 474  VDRLYELSTDPEVLKLKYLRPKDIPVGTIIPKCEVVTVSSSGIQLKLFNDQFTAFVPPLH 533

Query: 531  MSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLV--KSKLAILSSYAEATDRL 587
            +S+ ++V P +KFK+G+++  ++L V  +  I VT KK+LV  +  + ++SSYA A  R 
Sbjct: 534  ISDTKLVYPERKFKIGSKVKGKILNVDGRGHIFVTLKKSLVNLEEDIEVVSSYATA--RK 591

Query: 588  I------THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
            I      T   +   +  GC + F+ GV+GF P SE+       P     +GQ V  +I+
Sbjct: 592  IQEINQKTVATVQAFQAKGCHLLFFGGVRGFLPNSEISEVFVKRPEDHSRLGQTVMVKIL 651

Query: 642  SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
                   RI  +  +      E     D +V   ++V   V   T +++VV +   G  +
Sbjct: 652  DVDEERARIIATCKVSSDEAEEQKEAIDKMVLGRTMVDVTVAEKTKDSLVVEMNNVGL-R 710

Query: 697  GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA--KYSLINSAQ--Q 751
            G I   HL+D  +E        I+ G E + L V+D +  N + +A  K SLI  AQ  Q
Sbjct: 711  GVIYVGHLSDSRIEQNRAQLKKIRIGSELNAL-VIDKDVRNQVFNATLKESLIKDAQNNQ 769

Query: 752  LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
            LP    D       + +HGY+ +I + G FV F G+  G    S AV+ +  D +K +Y+
Sbjct: 770  LPVTYEDIKEKKLTTAMHGYIKSISDKGLFVAFNGKFVGMVLPSYAVESRDVDFAKAFYI 829

Query: 809  GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
             QSV + +L  +    R  L+ K+    S+D            K A L +       +K 
Sbjct: 830  NQSVAAYLLRTDDANQRFLLTFKEPKDKSSD------------KAASLAAINPVDKSIKR 877

Query: 869  VEGFIIGSVIEGKVH--ESNDFGVV--------VSFEEHSDVYGFITHHQLAGATVESGS 918
            +E F +G VI+ K+   + N   V+        +   E  D Y  I++ +     ++   
Sbjct: 878  LEDFKLGKVIDAKIKGVKKNQLNVILADNLYGRIDISEVFDSYEAISNPKEPLGGMKKDD 937

Query: 919  VIQAAIL---DVAKAERL-----------VDLSLKTVFIDRFREANSNRQAQKKKRKREA 964
            +I+  ++   DV   + L           ++L+++   I+     +SN + Q       +
Sbjct: 938  IIRVKVIGNHDVRGHKFLPITHTVTNSTVLELTMRKSMIN-----DSNCKVQ-------S 985

Query: 965  SKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ--KFPQKQFLNGQSV 1021
             +D+ V Q V   V     N L L++ P     I    ++D +++  K  ++QF  G ++
Sbjct: 986  IEDVAVGQEVLGFVNNYASNNLWLTVSPTLKAKISVFDLTDDSSKYSKNFEEQFPLGSAL 1045

Query: 1022 IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL 1081
              +V  + S    G +         T T  S   +  +   VG  + A+I +I    + L
Sbjct: 1046 KVSVKGIESEH--GFI---------TVTGRSHAVQIATDVKVGDKLPAKIVKINEKYILL 1094

Query: 1082 KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIK 1141
              G    G     +  DD S  +   F    + Q + A +++  ++ D  K     LS++
Sbjct: 1095 NLGGDVVGISFAPDALDDFSVPLNVAFEGM-VNQIIPATVVSIDSENDKIK-----LSLR 1148

Query: 1142 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201
             +     EI S       D+  G  V   V +V ++   + +S +L+A  F+  S    S
Sbjct: 1149 SANPKTREIKS-----HKDIKQGDVVQALVKRVTDKGIFVYLSTNLEA--FVPVSKLSDS 1201

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN-DNMQTFIHEG 1260
             L+E+++ +   + V G V++   + ++L L LR  +  ++ K   + N D+++     G
Sbjct: 1202 FLKEWKKFYKPMQCVVGKVINSENDSRIL-LTLR--ESEVNGKLHVLKNYDDIKV----G 1254

Query: 1261 DIVGGRISKILSGVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318
            DI  G +  +     G+ V++    ++ G  H +E+ +    D  S +  G  +K  V++
Sbjct: 1255 DIFEGNVKNVTD--FGVFVKLDDTVNITGLAHRSEIADTAPEDLSSLFGNGDRLKAYVIK 1312

Query: 1319 ISRTVRGTFHVELSLRSS 1336
            ++   +    + LSL++S
Sbjct: 1313 VNPDKK---QISLSLKAS 1327



 Score = 42.4 bits (98), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 97/449 (21%), Positives = 188/449 (41%), Gaps = 54/449 (12%)

Query: 1104 VENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC--DV 1161
            +E L   F +G ++  R+IA     D  K  +  LSI P +L++    +KLL +E     
Sbjct: 365  LEELKHKFAVGSSIRCRVIASLLNRDATKVLI--LSILPHILSLE---TKLLEKESLESF 419

Query: 1162 SIGQRV-TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
             +G ++ +  V   D+E+  + +      Q+         S++ E   +     +V   V
Sbjct: 420  PVGYKLDSCAVLGRDSEFLYVAVDEERIGQV-------HSSKIGEVNHQ----SSVAARV 468

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI-LSGVGGLVV 1279
            L  N+  +L  L   P  + +  K +   +  + T I + ++V    S I L        
Sbjct: 469  LGYNEVDRLYELSTDP--EVLKLKYLRPKDIPVGTIIPKCEVVTVSSSGIQLKLFNDQFT 526

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
               P L    H ++ K +    P   +  G  VK K+L     V G  H+ ++L+ SL  
Sbjct: 527  AFVPPL----HISDTKLVY---PERKFKIGSKVKGKIL----NVDGRGHIFVTLKKSL-- 573

Query: 1340 MSSTNSSDLSTDVDTPGKHL--EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1397
                   +L  D++    +    KI++++   +    V+   +KGC ++    +   +  
Sbjct: 574  ------VNLEEDIEVVSSYATARKIQEINQKTV--ATVQAFQAKGCHLLFFGGVRGFLPN 625

Query: 1398 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1457
            S +S+ +V+ PE    +G+ V  ++L V+    R+  T K S      Q E   +  + +
Sbjct: 626  SEISEVFVKRPEDHSRLGQTVMVKILDVDEERARIIATCKVSSDEAEEQKEA--IDKMVL 683

Query: 1458 GDIVIG-QIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----NIETIYRAGEKVKVK 1512
            G  ++   +       L + + N  L G+ +V  LS+  ++     ++ I R G ++   
Sbjct: 684  GRTMVDVTVAEKTKDSLVVEMNNVGLRGVIYVGHLSDSRIEQNRAQLKKI-RIGSELNAL 742

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQM 1541
            ++  D   +  +  +K S  K DA N Q+
Sbjct: 743  VIDKDVRNQVFNATLKESLIK-DAQNNQL 770


>gi|398407171|ref|XP_003855051.1| hypothetical protein MYCGRDRAFT_99211 [Zymoseptoria tritici IPO323]
 gi|339474935|gb|EGP90027.1| hypothetical protein MYCGRDRAFT_99211 [Zymoseptoria tritici IPO323]
          Length = 1790

 Score =  378 bits (971), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 273/886 (30%), Positives = 456/886 (51%), Gaps = 90/886 (10%)

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARIIAKSNKPDMK---- 1131
            ++ ++      GRI ++E  D   ++         FK    V  +I+   +  + +    
Sbjct: 940  QVNVRLADNVQGRIDVSEAFDSWKDITNKAAPLEKFKPNDVVEVKILGIHDARNHRFLPI 999

Query: 1132 -----KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH 1186
                 K  ++ELS K S +   + G + L     V  G     +V   D+    + +S +
Sbjct: 1000 SHRAGKVPVFELSAKRSRI---DAGDESLLSFDTVKKGSSCLAFVNNHDDSCVWVNLSPN 1056

Query: 1187 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
            ++ ++ ++D + +  +LQ  + RF IG A+   V +I+     L L  R   +  +   +
Sbjct: 1057 VRGRVALMDLSDDVGQLQNVENRFRIGCALKVTVKAIDLSSNRLDLTAR---EATTSGPL 1113

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
             + +      +  G ++  R++K+      + V+I  +L G V   EL +       + Y
Sbjct: 1114 TLQD------LKPGMVLPARVTKV--NERSVFVEIADNLAGPVPLVELSDDYEQVNTAQY 1165

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
            ++   V+  VL +    +  F   LS+R S           LS+ +     H+  +  L 
Sbjct: 1166 NKNDIVRVCVLGVDLPNKRAF---LSMRPS---------KVLSSSLPVKDPHVNDVSQLK 1213

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
               IV+G+VK V  KG F+ L  + DA V +S+LSD Y++  +  F I +LV GRVL+V+
Sbjct: 1214 VGDIVRGFVKQVADKGVFVTLGARTDALVRISDLSDQYIKDWQSVFEIDQLVKGRVLAVD 1273

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN--LVG 1484
              SK+V ++LK S         +N ++++ VG  V+G++++VE +G FI I+NT   L G
Sbjct: 1274 VSSKQVRLSLKNSHVDKNYTPPLN-INDIEVGMTVVGKVRKVEDFGAFIDIDNTQPRLSG 1332

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1544
            LCH SE++   ++++ T+Y AG+ VK ++L VD EKR+ISLG+K+SYF N AD+    SE
Sbjct: 1333 LCHRSEVAAKRIEDVRTLYSAGDVVKARVLDVDVEKRKISLGLKASYFNNTADD--EGSE 1390

Query: 1545 EESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDE 1604
            E+SD               E   V V+D D ES+  G + L+ ++   S      + D+ 
Sbjct: 1391 EDSD--------------AEMGGVDVEDADEESDSDGGIDLSNVQDIESEEEFS-DADEM 1435

Query: 1605 QPDMDNGISQNQG-------------HTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEER 1651
            + D D  +    G              TD+    + ++   A KK K ++  EI+     
Sbjct: 1436 EVDDDPAVKLTAGLKTSGFDWTGDALDTDKGAASESEHEGPAPKKRKSKK-AEIKVDLTG 1494

Query: 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1711
             L+K  PR+  +FER +   PN+S +WI+YMAF L +++++KAR IAERAL+TI+IRE  
Sbjct: 1495 DLDKYGPRSVSDFERQLLGQPNNSDLWIQYMAFQLQLSEIQKARDIAERALRTIHIRETE 1554

Query: 1712 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1771
            EK N+W+A+ NLE EYG+  E+ V +VF++A Q  DP ++H  +  +Y  + ++  AD  
Sbjct: 1555 EKANVWIAWLNLEVEYGD--EDRVEEVFKQACQVQDPLEMHEKMASIYIDSGKHVKADAT 1612

Query: 1772 LYKMI--KKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827
              +M+  K F+ S  VWL     LL   Q     +A++ +AL S+P  +H    ++ A L
Sbjct: 1613 FERMVGNKAFRASPDVWLNYATFLLDTLQAPARARALLSKALQSVPTREHRLLTAKFAAL 1672

Query: 1828 EFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLD-----------QEIRLGDVDLIRGL 1874
            EF++  G A+RGR++FEG++SEYPK +  W ++LD            E +   +   R L
Sbjct: 1673 EFRSQYGDAERGRTIFEGLVSEYPKWSSGWDMWLDIERARVAHAENAEAKKDAIVKTRAL 1732

Query: 1875 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            FER     +  ++ KF FKK+LE+E+    E+ +E VK+ A E+VE
Sbjct: 1733 FERISKTKMKKRRAKFTFKKWLEFEEKEAGEKEVEKVKKMAKEFVE 1778



 Score =  177 bits (450), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 216/848 (25%), Positives = 360/848 (42%), Gaps = 103/848 (12%)

Query: 21  KASKNQFKNSKKQINDAVEAQDLALPPDDDV-----PVFPRGGGHSLTQRERDEI--HAE 73
           + SKN  K +K + + A        PP   V       FPRGGG  LT  E  +I   AE
Sbjct: 32  RESKNGSKETKPKKSHADTDAGEKRPPAKSVLQQEERAFPRGGGSVLTPLEHKQIKAQAE 91

Query: 74  VDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGS------------LFGDGISGKLPR 121
            D  FE          ++  +  E KA++T+ D G+              GD   GK+  
Sbjct: 92  RDVLFE----------QENGEVAEEKADDTLFDEGTSAAKKKKRKDGRKSGDE-PGKVEG 140

Query: 122 YANKI---TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLAR---AADALDPIL---- 171
              +I   + K++  G  + G V  +  +D+ + LP  L G A+    +++L+  +    
Sbjct: 141 SGVRIQGLSYKSLVVGSTVLGRVTGITGRDIALALPNNLTGYAQITAVSESLNARIERLL 200

Query: 172 ------DNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRK--IWLSLRLSLLYK 223
                 D+  +  ED  L  +FHVGQ +  +V     +  + GK+K  I L+L    +  
Sbjct: 201 QDDGKPDDSGDDAEDIDLKQLFHVGQWLRAVVTSTGSESADGGKKKRHIELTLDPGQVNG 260

Query: 224 GLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSGI-DVKPGLLL 280
           GL+ +       +   V+S+EDHG ++  GL   S  GF+ +  L     I  +  G ++
Sbjct: 261 GLAEDRFVVNSTIQGSVRSVEDHGIVMDLGLSDASVKGFISKKELGSAYNITQISEGQVM 320

Query: 281 QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI-----SIDLLVPGMMVSTRVQSILEN 335
             +V       KV+ L  D +  +  +  +   I     ++D   PG  V   V      
Sbjct: 321 LCLVTGKGSNGKVLKLCPDTNKFAVNLPSNKLPIVSEAPTVDAFQPGTAVDILVTDCDGR 380

Query: 336 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV----DPTSRAVGLTL 391
           GV+   +     T D+FH    +   +    +    K  ARI++     D + RA  L  
Sbjct: 381 GVVGKIMGMLNVTADVFH-SGAYAVEDMAEKHKIGSKAKARIIYSLPQDDGSRRAADLD- 438

Query: 392 NPYLLHNRAPPSHVKVGDIYDQSKVVRV--DRGLGLLLDIPST---PVSTPAYVTISDVA 446
                        + +    + +KVVR+  +RGL L L +P     P +  A+  IS V+
Sbjct: 439 -----------QKLTLSATVESAKVVRISAERGLFLTLPMPGNHEQPAA--AFAHISQVS 485

Query: 447 EEEVRKLEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           +  +  +     YK  S  + RI+ +  ++ +    LK S  +       D+  G +VKG
Sbjct: 486 DSRIDSISTTGPYKVDSTHKARIIAYNPVDNVYYVSLKKSTLDQAFLRLEDLTVGSIVKG 545

Query: 505 KVIAV------DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
            V  +         G +V+    +  L P  H+S+ ++  P +K++ G  +  RVL V +
Sbjct: 546 TVDKLILGGKKGVTGVLVKLSDSISGLVPEMHLSDTQLSHPERKYREGFPIKARVLSVDT 605

Query: 559 --KRITVTHKKTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
             + I +T KK+LV++  +  I   Y +    + + G I  +   G  V+FY  V+ + P
Sbjct: 606 DKRHIRLTVKKSLVEADDSSLIWKDYDDLKPGMESQGTIINLLPAGAAVQFYGPVRAWLP 665

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLG 670
            +E+      +  + + +GQ V+ +I+S  PA+R + ++        +E       V  G
Sbjct: 666 VAEMSETFIEKTENHFRLGQTVRVKILSVNPAAREMKVTCKSGGELTAEQQTAWEEVSGG 725

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV 729
            LVSGVV V   + V V  ++ G  KG +  EHL D     A      I+ G     LLV
Sbjct: 726 DLVSGVVSVKGADNVSVD-LSNGL-KGVVKVEHLVDASAAKAESALKRIRVGQTLSNLLV 783

Query: 730 LD--NESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           L+  + S  + LS K +L+  A+   L            VHG V NI  TG +V F   +
Sbjct: 784 LEKLDRSQTVALSNKPALVEDAKNGTLIKSFEDAQEGRKVHGSVRNITPTGVYVEFASGI 843

Query: 786 TGFAPRSK 793
            G  P+S+
Sbjct: 844 VGLLPKSQ 851



 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 112/236 (47%), Gaps = 22/236 (9%)

Query: 1260 GDIVGGRISKIL----SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            G IV G + K++     GV G++V++   + G V    L +  +S P   Y EG  +K +
Sbjct: 540  GSIVKGTVDKLILGGKKGVTGVLVKLSDSISGLVPEMHLSDTQLSHPERKYREGFPIKAR 599

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            VL +    R   H+ L+++ SL  + + +SS +  D D          DL P M  QG +
Sbjct: 600  VLSVDTDKR---HIRLTVKKSL--VEADDSSLIWKDYD----------DLKPGMESQGTI 644

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
             N+   G  +     + A + ++ +S+ ++E  E  F +G+ V  ++LSV P ++ ++VT
Sbjct: 645  INLLPAGAAVQFYGPVRAWLPVAEMSETFIEKTENHFRLGQTVRVKILSVNPAAREMKVT 704

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
             K+    TA Q        +  GD+V G +    +  + + + N  L G+  V  L
Sbjct: 705  CKSGGELTAEQQ--TAWEEVSGGDLVSGVVSVKGADNVSVDLSN-GLKGVVKVEHL 757



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 139/319 (43%), Gaps = 36/319 (11%)

Query: 542  KFKVGAEL--VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
            +F++G  L    + + + S R+ +T ++      L +     +    ++    +TK+ + 
Sbjct: 1079 RFRIGCALKVTVKAIDLSSNRLDLTAREATTSGPLTL----QDLKPGMVLPARVTKVNER 1134

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
              FV   + + G  P  EL  D     ++ Y+   +V+  ++     ++R  LS  M+P+
Sbjct: 1135 SVFVEIADNLAGPVPLVELSDDYEQVNTAQYNKNDIVRVCVLGVDLPNKRAFLS--MRPS 1192

Query: 660  RVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
            +V    L            +K+G +V G V  V    V V + A+  +   +    L+D 
Sbjct: 1193 KVLSSSLPVKDPHVNDVSQLKVGDIVRGFVKQVADKGVFVTLGAR--TDALVRISDLSD- 1249

Query: 708  LEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN 762
             ++    +SV    +E DQL     L +D  S  + LS K S ++     P + + I   
Sbjct: 1250 -QYIKDWQSV----FEIDQLVKGRVLAVDVSSKQVRLSLKNSHVDKNYTPPLNINDIEVG 1304

Query: 763  SVVHGYVCNIIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
              V G V  + + G F+       RL+G   RS+    +  D+   Y  G  V++ +LDV
Sbjct: 1305 MTVVGKVRKVEDFGAFIDIDNTQPRLSGLCHRSEVAAKRIEDVRTLYSAGDVVKARVLDV 1364

Query: 820  NSETGRITLSLKQSCCSST 838
            + E  +I+L LK S  ++T
Sbjct: 1365 DVEKRKISLGLKASYFNNT 1383



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 32/199 (16%)

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            +D S +    +V G+V  + + G FV    R       S   D    D    + + Q V+
Sbjct: 1207 NDVSQLKVGDIVRGFVKQVADKGVFVTLGARTDALVRISDLSDQYIKDWQSVFEIDQLVK 1266

Query: 814  SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 873
              +L V+  + ++ LSLK         S + +++     I  ++                
Sbjct: 1267 GRVLAVDVSSKQVRLSLKN--------SHVDKNYTPPLNINDIE---------------- 1302

Query: 874  IGSVIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVE-------SGSVIQAAIL 925
            +G  + GKV +  DFG  +  +     + G     ++A   +E       +G V++A +L
Sbjct: 1303 VGMTVVGKVRKVEDFGAFIDIDNTQPRLSGLCHRSEVAAKRIEDVRTLYSAGDVVKARVL 1362

Query: 926  DVAKAERLVDLSLKTVFID 944
            DV   +R + L LK  + +
Sbjct: 1363 DVDVEKRKISLGLKASYFN 1381



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 15/213 (7%)

Query: 630 YHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVD--VVTPNA 684
           Y V    K RI++  P      +S     +    +  +DL  +GS+V G VD  ++    
Sbjct: 498 YKVDSTHKARIIAYNPVDNVYYVSLKKSTLDQAFLRLEDLT-VGSIVKGTVDKLILGGKK 556

Query: 685 VVVYVIAK--GYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLS 740
            V  V+ K      G +P  HL+D  L H    +   + G+    ++L +D +  ++ L+
Sbjct: 557 GVTGVLVKLSDSISGLVPEMHLSDTQLSHP---ERKYREGFPIKARVLSVDTDKRHIRLT 613

Query: 741 AKYSLI--NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
            K SL+  + +  +  D   + P     G + N++  G  V+F G +  + P ++  +  
Sbjct: 614 VKKSLVEADDSSLIWKDYDDLKPGMESQGTIINLLPAGAAVQFYGPVRAWLPVAEMSETF 673

Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
                  + +GQ+VR  IL VN     + ++ K
Sbjct: 674 IEKTENHFRLGQTVRVKILSVNPAAREMKVTCK 706



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 93/460 (20%), Positives = 193/460 (41%), Gaps = 73/460 (15%)

Query: 1092 HITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD------MKKSFLWELSIKPSML 1145
            HI++V+D + + +      +K+  T  ARIIA  N  D      +KKS L +  ++   L
Sbjct: 480  HISQVSDSRIDSISTT-GPYKVDSTHKARIIA-YNPVDNVYYVSLKKSTLDQAFLRLEDL 537

Query: 1146 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205
            TV  I  K   ++  +   + VTG + K+ +  + L    HL             ++L  
Sbjct: 538  TVGSI-VKGTVDKLILGGKKGVTGVLVKLSDSISGLVPEMHLS-----------DTQLSH 585

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1265
             +R++  G  +   VLS++ +K+ +RL ++        K++  ++D+   +    D+  G
Sbjct: 586  PERKYREGFPIKARVLSVDTDKRHIRLTVK--------KSLVEADDSSLIWKDYDDLKPG 637

Query: 1266 RISKILSGVGGLVVQIGP-----HLYGRVH----FTELKNICVSDPLSGYDEGQFVKCKV 1316
              S+      G ++ + P       YG V       E+    +    + +  GQ V+ K+
Sbjct: 638  MESQ------GTIINLLPAGAAVQFYGPVRAWLPVAEMSETFIEKTENHFRLGQTVRVKI 691

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L ++   R    ++++ +S           +L+ +  T        E++S   +V G V 
Sbjct: 692  LSVNPAAR---EMKVTCKS---------GGELTAEQQTA------WEEVSGGDLVSGVVS 733

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGY---VESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
               +    + LS  L   V + +L D      ES  K   +G+ ++  +L +E L +   
Sbjct: 734  VKGADNVSVDLSNGLKGVVKVEHLVDASAAKAESALKRIRVGQTLS-NLLVLEKLDRSQT 792

Query: 1434 VTLKT-----SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
            V L        D++  +   I +  +   G  V G ++ +   G+++    + +VGL   
Sbjct: 793  VALSNKPALVEDAKNGTL--IKSFEDAQEGRKVHGSVRNITPTGVYVEFA-SGIVGLLPK 849

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            S+++ +     +   R  + + +++  +D  + R  L M+
Sbjct: 850  SQIAPEAATKPDFGLRKDQTLSLRVSGIDNLQERFILSMR 889



 Score = 40.4 bits (93), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 5/166 (3%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +K G +V+G V  V   G  V       AL  +  +S+  I      F++   +  RV
Sbjct: 1210 SQLKVGDIVRGFVKQVADKGVFVTLGARTDALVRISDLSDQYIKDWQSVFEIDQLVKGRV 1269

Query: 554  LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--- 608
            L V   SK++ ++ K + V        +  +    +   G + K+E  G F+   N    
Sbjct: 1270 LAVDVSSKQVRLSLKNSHVDKNYTPPLNINDIEVGMTVVGKVRKVEDFGAFIDIDNTQPR 1329

Query: 609  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            + G   RSE+      +  ++Y  G VVK R++      R+I+L  
Sbjct: 1330 LSGLCHRSEVAAKRIEDVRTLYSAGDVVKARVLDVDVEKRKISLGL 1375


>gi|448510670|ref|XP_003866400.1| hypothetical protein CORT_0A05730 [Candida orthopsilosis Co 90-125]
 gi|380350738|emb|CCG20960.1| hypothetical protein CORT_0A05730 [Candida orthopsilosis Co 90-125]
          Length = 1705

 Score =  378 bits (971), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 345/1286 (26%), Positives = 597/1286 (46%), Gaps = 162/1286 (12%)

Query: 696  KGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-SAQ 750
            +G IP+ H++D    + E    + S +K         +L ++    L++ + SL+N    
Sbjct: 516  QGFIPSNHMSDIKLVYPERKFRIGSKVKG-------RLLSHKGKTPLVTVRKSLVNLEDD 568

Query: 751  QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
             + S+          +  V   +  G  V F G L  F P+++  +    D SK   +GQ
Sbjct: 569  DILSNFEDAKIGMKTNATVEKFVHGGVIVSFFGSLRAFLPKTEISETFVDDASKYLKLGQ 628

Query: 811  SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
             V   ILD+N +  R+ ++LKQS   ST                         S+   + 
Sbjct: 629  VVNVKILDINEDQKRLVVTLKQSSQLST-------------------------SQKTEIA 663

Query: 871  GFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 929
              I G SV++  V E  +  V++  E  S++ G +   QL+    E    +       +K
Sbjct: 664  NLIPGISVVQAVVVEKKNDSVLIELE-GSNLRGVVHDGQLSDGNYEQNRALFKKTEINSK 722

Query: 930  AERLV---DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYL 986
             E L+   D   +TV         S  +A K+K+      D+  ++ +   V+ V    L
Sbjct: 723  LEVLILEKDFKARTVIA---TAKKSLIEASKRKQLPTDFDDVQPNKIIKGYVKSVTNLGL 779

Query: 987  VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 1046
             +        +  A        +   ++F   QS+   V+++ + +   R LL +   ++
Sbjct: 780  FVCFTGRLTGLILAKYVSKTAHEDLSRRFYKYQSLACRVLSVDTENK--RFLLTIADSND 837

Query: 1047 TE----TSSSKRAKKK-SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            TE    T+     KK    Y  G + +A I  +K  +L ++     +GR+ +T+      
Sbjct: 838  TEGDNLTNPVDSTKKTVEDYAPGVVTKAIIKSVKGTQLNVRLADNLNGRVDVTQCFKSIK 897

Query: 1102 NVVENL---FSNFKIGQTVTARIIAKSNKPD----------MKKSFLWELSIKPSMLTVS 1148
            ++ +NL    S F  G  +  ++I   +  +            K  + ELS++ + +   
Sbjct: 898  DI-KNLSQPLSGFHKGDELNVKVIGVHDAKNHTFLPITHNKANKQTIIELSLQDAKVNRK 956

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1208
             + +  L    DV  G  +  +V  VD  +  ++I+  +K ++  +D + + +    F  
Sbjct: 957  HLSALKL---ADVKKGDELVAFVNNVDRGFVWVSITPSIKGRVSFMDLSDDGTIFHNFDN 1013

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLV-----LRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
            R+ IG AV   V  ++ E + L L      +R F D                 + +G   
Sbjct: 1014 RYPIGAAVQVKVKEVDNEHQTLALTSREHYIRSFDD-----------------VKKGKTY 1056

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS-GYDEGQFVKCKVLEISRT 1322
              RI K+      ++V +G  +      T+  N   SD L  G+   ++V  KVL+I   
Sbjct: 1057 PARIIKVKDSY--VLVDLGGKVIASSFITDALN-NYSDKLDHGFHVNEYVGAKVLDIDAD 1113

Query: 1323 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1382
             +    + +SLR                D D+  + ++  EDLS   IV+G+VKNV++ G
Sbjct: 1114 QQ---KISVSLR----------------DEDSTDRTIDSFEDLSRGDIVKGFVKNVSTNG 1154

Query: 1383 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442
             ++ L R + A V +S+LSD Y++  +K F   + V G++++ +    R+ +TLK S+  
Sbjct: 1155 VYVSLGRSVFALVRVSDLSDSYLKDWKKFFKPNQSVTGKIINCKE-EGRILMTLKESEVN 1213

Query: 1443 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIET 1501
               ++ +    +L VGDI  G + +   +G+F+ ++ T N+ GLCH SE+SE+ V N+  
Sbjct: 1214 GELKT-MKTFDDLAVGDIFEGHVTKTTDFGVFVKLDGTVNISGLCHHSEISENDVKNVMA 1272

Query: 1502 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE-EVGSYNRS 1560
            ++  G++VKVKILK+D  K+++SLGMK+SYF +        + EE D+ +E E+   +  
Sbjct: 1273 LFGEGDRVKVKILKIDPSKKQLSLGMKASYFDD--------THEEVDDDVEMEIAEEDEE 1324

Query: 1561 SLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTD 1620
               E S       + E+ED       + +   +    E    +      N +S N G   
Sbjct: 1325 EDDETSG------ESENEDVIIDAEEESDDDDNEEEEEGEEAETSTTESNALSTN-GFDW 1377

Query: 1621 EAKTIDEKNN-----------RHAKKKEKEEREQEIRAAEERL-LEKDAPRTPDEFERLV 1668
             A  +D+  +            ++K     +  ++ R  ++ + L   AP++  +FERL+
Sbjct: 1378 TASILDQTEDHDSSSDDEDFMSNSKSSRPRKSRKQTRVEDKTIDLNTRAPQSVADFERLL 1437

Query: 1669 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1728
              +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE EK+NIW+A  NLEN +G
Sbjct: 1438 IGNPNSSILWMNYMSFNLQLSEVDKARQIGERALETINYREEQEKMNIWIALLNLENTFG 1497

Query: 1729 NPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR 1788
               +E++  VF++A QY D   +H  L  +   +E+   A EL   M KKF  +   W+ 
Sbjct: 1498 T--DESLDAVFKKACQYMDSFIIHQKLASILIMSEKYDQARELFKAMGKKFGQNVLTWVL 1555

Query: 1789 RVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE 1847
                LL Q      + V+ RAL  LP+  HI+ + + A LE+  G  ++ RS+FEG++++
Sbjct: 1556 YGSFLLDQDLNNEARQVLARALQVLPKRDHIEVVRKFAQLEYAKGDVEQARSLFEGLVAD 1615

Query: 1848 YPKRTDLWSIYLDQEIRL-------------GDVDLIRGLFERAI-SLSLPPKKMKFLFK 1893
             PKR DLW++Y+DQEI+               +   I  LFER I +  +  K+ KF F 
Sbjct: 1616 APKRIDLWNVYIDQEIKYGNGGDGDDDNKDSSNKQQIESLFERVIENKKVSRKQAKFFFN 1675

Query: 1894 KYLEYEKSVGEEERIEYVKQKAMEYV 1919
            K+L YE+  G+E+ +  VK KA+EYV
Sbjct: 1676 KWLAYEEGQGDEKMVGKVKAKAIEYV 1701



 Score =  174 bits (440), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 204/858 (23%), Positives = 364/858 (42%), Gaps = 104/858 (12%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG   LT  E  EI  E   D  FE   +      KK+ K T    N       S  
Sbjct: 16  FPRGGATGLTPLEVKEISNEATKDVLFEVASQ------KKRTKNTTDSENPKKKQRTSKK 69

Query: 112 ----------GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA 161
                     GD    K  +    ++ KN+  G  ++G +  +N+ D+V+ L   L G  
Sbjct: 70  KGSKSESLKDGDDEDEKKTQI-EYLSFKNLVPGSFVFGQIQAINKLDIVLALGNNLVGYV 128

Query: 162 RAADALDPILD-----------------------NEIEANEDNLLP---TIFHVGQLVSC 195
                   ++D                         I +  + + P   +IF +G  +  
Sbjct: 129 PITAISSHVIDLIKKYEEESEEEEEDEEDYDDNGTLINSKPEKVFPDLKSIFQIGSWLKA 188

Query: 196 IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP 255
            V++ +       K++I +S+   ++   L  E +  G +L+  VKSIEDHG IL  G+ 
Sbjct: 189 KVVETETS----NKKRIEMSIEPEIVNAHLEKEDIVSGNILSCSVKSIEDHGLILESGIE 244

Query: 256 SFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRK----VVYLSSDPDTVSKCVTKDL 311
             + F+    L      +++P    QG+V +     K    ++ +     + +K +T   
Sbjct: 245 GLSAFVSNKEL---KNAEIEPSTCAQGLVFTTTVVSKPSGRIITVKPAVPSTTKKLTPIT 301

Query: 312 KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 371
              S+D +  G +V   V  + ++G+         GT++   +Q  F     K+ +    
Sbjct: 302 TISSVDAIQVGAIVDALVSDVTDSGIGARVFGLVDGTINFSDVQ-IFSVEELKHKFAIGS 360

Query: 372 KVNARILFVDPTS--RAVGLTLNPYLLHNRAPPSHVK------VGDIYDQSKVVRVDR-- 421
            V ARI+ +      R + L+L  + L      S  +      VG ++D  +V+  D+  
Sbjct: 361 NVKARIMAILQKGGVRKLVLSLVSHSLQMGDGTSRTEALEAFPVGHVFDVVEVLGSDQEY 420

Query: 422 ---GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 478
               LGL         ST   +  S++ +    K    Y   S  + R++ +  ++ L  
Sbjct: 421 IFVKLGL---------STFGQIHNSNIDDS---KTLIDYSVSSKHKARVIAYNMVDNLYV 468

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKG----KVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
              K S  E    +  D+  G ++      KV+  DS G  V+     +   P  HMS+ 
Sbjct: 469 LTFKPSTIEAPYLSVRDIPVGTLLPNCEITKVLP-DSGGIQVKLLDDFQGFIPSNHMSDI 527

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWI 593
           ++V P +KF++G+++  R+L  K K   VT +K+LV      ILS++ +A   + T+  +
Sbjct: 528 KLVYPERKFRIGSKVKGRLLSHKGKTPLVTVRKSLVNLEDDDILSNFEDAKIGMKTNATV 587

Query: 594 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
            K    G  V F+  ++ F P++E+      + S    +GQVV  +I+      +R+ ++
Sbjct: 588 EKFVHGGVIVSFFGSLRAFLPKTEISETFVDDASKYLKLGQVVNVKILDINEDQKRLVVT 647

Query: 654 FMMKPTRVSEDDLVKLGSLVSGV-----VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-- 706
            + + +++S     ++ +L+ G+     V V   N  V+  +     +G +    L+D  
Sbjct: 648 -LKQSSQLSTSQKTEIANLIPGISVVQAVVVEKKNDSVLIELEGSNLRGVVHDGQLSDGN 706

Query: 707 -HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSA--QQLPSDASHIHP 761
                A   K+ I    E   +L+L  D ++  ++ +AK SLI ++  +QLP+D   + P
Sbjct: 707 YEQNRALFKKTEINSKLE---VLILEKDFKARTVIATAKKSLIEASKRKQLPTDFDDVQP 763

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
           N ++ GYV ++   G FV F GRLTG             DLS+ +Y  QS+   +L V++
Sbjct: 764 NKIIKGYVKSVTNLGLFVCFTGRLTGLILAKYVSKTAHEDLSRRFYKYQSLACRVLSVDT 823

Query: 822 ETGRITLSLKQSCCSSTD 839
           E  R  L++  S  +  D
Sbjct: 824 ENKRFLLTIADSNDTEGD 841



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 130/568 (22%), Positives = 230/568 (40%), Gaps = 86/568 (15%)

Query: 996  SIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 1055
            +I ++ V  ++ ++   K F  G +V A +MA+       +L+L L + S      + R 
Sbjct: 338  TINFSDVQIFSVEELKHK-FAIGSNVKARIMAILQKGGVRKLVLSLVSHSLQMGDGTSRT 396

Query: 1056 KKKSSYDVGSLVQA-EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 1114
            +   ++ VG +    E+       + +K G+   G+IH + ++D K+ +      ++ + 
Sbjct: 397  EALEAFPVGHVFDVVEVLGSDQEYIFVKLGLSTFGQIHNSNIDDSKTLI------DYSVS 450

Query: 1115 QTVTARIIAKSNKPDMKKSFLWELSIKPSM-----LTVSEIGSKLLFEECDVSIGQRVTG 1169
                AR+IA  N  D     L+ L+ KPS      L+V +I    L   C+++       
Sbjct: 451  SKHKARVIA-YNMVDN----LYVLTFKPSTIEAPYLSVRDIPVGTLLPNCEIT------- 498

Query: 1170 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS------- 1222
               KV  +   + +      Q FI  +     +L   +R+F IG  V G +LS       
Sbjct: 499  ---KVLPDSGGIQVKLLDDFQGFIPSNHMSDIKLVYPERKFRIGSKVKGRLLSHKGKTPL 555

Query: 1223 INKEKKLLRL----VLRPFQDG-ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
            +   K L+ L    +L  F+D  I  KT    N  ++ F+H                GG+
Sbjct: 556  VTVRKSLVNLEDDDILSNFEDAKIGMKT----NATVEKFVH----------------GGV 595

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1337
            +V     L   +  TE+    V D       GQ V  K+L+I+   +    + ++L+   
Sbjct: 596  IVSFFGSLRAFLPKTEISETFVDDASKYLKLGQVVNVKILDINEDQK---RLVVTLK--- 649

Query: 1338 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM-IVQGYVKNVTSKGCFIML-SRKLDAKV 1395
                   SS LST   T      +I +L P + +VQ  V    +    I L    L   V
Sbjct: 650  ------QSSQLSTSQKT------EIANLIPGISVVQAVVVEKKNDSVLIELEGSNLRGVV 697

Query: 1396 LLSNLSDGYVESPEKEFP---IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI-NN 1451
                LSDG  E     F    I   +   +L  +  ++ V  T K S    + + ++  +
Sbjct: 698  HDGQLSDGNYEQNRALFKKTEINSKLEVLILEKDFKARTVIATAKKSLIEASKRKQLPTD 757

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
              ++    I+ G +K V + GLF+      L GL     +S+   +++   +   + +  
Sbjct: 758  FDDVQPNKIIKGYVKSVTNLGLFVCFTG-RLTGLILAKYVSKTAHEDLSRRFYKYQSLAC 816

Query: 1512 KILKVDKEKRRISLGMKSSYFKNDADNL 1539
            ++L VD E +R  L +  S    + DNL
Sbjct: 817  RVLSVDTENKRFLLTIADSN-DTEGDNL 843



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 130/306 (42%), Gaps = 20/306 (6%)

Query: 351  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDI 410
            IFH        N+ N Y     V  ++  VD   + + LT   + + +      VK G  
Sbjct: 1007 IFH--------NFDNRYPIGAAVQVKVKEVDNEHQTLALTSREHYIRSF---DDVKKGKT 1055

Query: 411  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
            Y  +++++V     +L+D+    +++     I+D       KL+  +     V  ++L  
Sbjct: 1056 Y-PARIIKVKDSY-VLVDLGGKVIASSF---ITDALNNYSDKLDHGFHVNEYVGAKVLDI 1110

Query: 471  -RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
                + ++  +    + +  + +  D+  G +VKG V  V + G  V     V AL  + 
Sbjct: 1111 DADQQKISVSLRDEDSTDRTIDSFEDLSRGDIVKGFVKNVSTNGVYVSLGRSVFALVRVS 1170

Query: 530  HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLI 588
             +S+  +    K FK    +  +++  K + RI +T K++ V  +L  + ++ +     I
Sbjct: 1171 DLSDSYLKDWKKFFKPNQSVTGKIINCKEEGRILMTLKESEVNGELKTMKTFDDLAVGDI 1230

Query: 589  THGWITKIEKHGCFVRFYNGVQ--GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
              G +TK    G FV+    V   G    SE+  +      +++  G  VK +I+   P+
Sbjct: 1231 FEGHVTKTTDFGVFVKLDGTVNISGLCHHSEISENDVKNVMALFGEGDRVKVKILKIDPS 1290

Query: 647  SRRINL 652
             ++++L
Sbjct: 1291 KKQLSL 1296


>gi|50294291|ref|XP_449557.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528871|emb|CAG62533.1| unnamed protein product [Candida glabrata]
          Length = 1706

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 348/1263 (27%), Positives = 596/1263 (47%), Gaps = 176/1263 (13%)

Query: 726  QLLVLDNESSNLLLSAKYSLINSAQ-------QLPSDASHIHPNSVVHGYVCNIIETGCF 778
            ++L +DN   +++ + K SL+N  +          +  S  + N    G V +    GC 
Sbjct: 544  RILNVDNHG-HIIATMKKSLVNDEELEKPVIESFETAKSIKNKNEKTVGTVQSFNGHGCV 602

Query: 779  VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            + F G +TGF P+S+  +           +GQ+V+  +L+V+ E  RI ++    C  S 
Sbjct: 603  IMFFGGVTGFLPKSEVSEVFVKRAEDHLRLGQTVQVKVLEVDEERRRIIVT----CKVSN 658

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
            + +  Q+  +   KI                      S+IE  V E     V+V   +  
Sbjct: 659  EEAQQQKSIIESLKIGQ--------------------SIIETVVVEKTKDSVIVEIPDVG 698

Query: 899  DVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
             + G I    ++   +E           GS +   ++D     ++ +LSLK   +   ++
Sbjct: 699  -IRGVIYVGHISDERIEQCRAEIKKIRIGSKLTGLVIDKDSRTQIFNLSLKKSLM---KD 754

Query: 949  ANSNRQAQKKKRKREASKDLGVHQTVNAIVEI-----VKENYLVLSLPEYNHSIGYASVS 1003
            A + R         +  K   +H  V +I            ++ L LP Y        + 
Sbjct: 755  AQNKRLPTTFAEITKFKKTDPLHGYVKSISSTGVFVAFTGKFVGLVLPSYAVESRQVDI- 813

Query: 1004 DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK------ 1057
                    +K F + QSV A +  L +     R LL LKA    + + +  A+       
Sbjct: 814  --------EKAFYSNQSVTAYL--LRTDDDNERFLLTLKAPKVEKAAETISAENIIDTSI 863

Query: 1058 KSSYDV--GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKI 1113
            KS  D+  G ++ A+I  +K  +L +      HGR+ I+EV D+ +++ +  +  S++K 
Sbjct: 864  KSVKDIKLGKILDAKIKGVKKNQLNIILADNVHGRVDISEVFDNYNDIKDKKHPLSHYKA 923

Query: 1114 GQTVTARIIA----KSNKP-----DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
               V  +II     KS+K      +  K  ++EL++KPS L   ++      +  D+++G
Sbjct: 924  NDKVRVKIIGHHDLKSHKSLPITHNFVKGTVFELTMKPSQLKSKDVKE---LDIRDITVG 980

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP-SELQEFQRRFHIGKAVTGHVLSI 1223
              +  +V    N    LT++  +KA+L I D + E    ++  +  F +G  +  +V   
Sbjct: 981  DEIIAFVNNYQNSTLWLTVTPTIKAKLSIFDLSEETLMNIKNVEDDFPLGSVLKVNVTGK 1040

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE-GDIVGGRISKILSGVGGLVVQIG 1282
            ++ K +L++  R  +          S D+++   H  G IV      +L  +   +  I 
Sbjct: 1041 DQNKSILQVTQRNGKIN--------SIDDLKVGGHTIGKIVKVTPKYLLIELENKITGIS 1092

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
              L     FTE       D +    E +FVK K   I+  +     V+L L         
Sbjct: 1093 TALEALNDFTE-----PLDQVFAGKENEFVKAK---ITSVIADEKKVQLQL--------- 1135

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
              + D ST V     H     DL    +V G VK VT KG F+ L + ++A V +S LSD
Sbjct: 1136 --AEDEST-VQKITSH----SDLKVGEVVNGLVKTVTDKGLFVFLGKSVEAFVPVSKLSD 1188

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1462
             Y++  +K +   + V G+++S      R+ +TL+ ++        + N S++  GDI  
Sbjct: 1189 SYLKEWKKFYKPMQPVVGKIVSCNE-DDRILLTLRETEV-NGDLKVLKNYSDIKPGDIFN 1246

Query: 1463 GQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
            G ++ V  +G+F+ ++NT N+ GL H++E++++  ++I++I+  G++VK  +LK + EK+
Sbjct: 1247 GTVRNVTDFGVFVKLDNTANVTGLAHITEIADEVPEDIQSIFGVGDRVKAYVLKSNPEKK 1306

Query: 1522 RISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1581
            ++SL +K+S+F  +    + +  +     I+E                 QD  M+ E   
Sbjct: 1307 QLSLSLKASHFNTNETITEKAESQPQPRKIDED----------------QDELMDDE--- 1347

Query: 1582 SLVLAQIESRASVPPLEVNLDDEQP---------DMDNGISQNQGHTDEAKTIDEKNNRH 1632
              V+   ES AS        DDE+            D G+S + G       +D+ N   
Sbjct: 1348 --VVYNSESEAS--------DDEEAHSSKSTTVISNDGGLSLSAGFDWTTSILDQANASS 1397

Query: 1633 AKKKEK----EEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFVWIK 1680
              + ++    E +  + +  + + L +D        AP +  +FERL+  +PNSS +W+ 
Sbjct: 1398 DSESDEEDFMESKRSKNKKKKSKNLVEDKTIDINTRAPESVADFERLIIGNPNSSVIWMN 1457

Query: 1681 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1740
            YMAF L +++++KAR +AERAL+TIN REE EKLNIW+A  NLEN +G+  EE +  VF 
Sbjct: 1458 YMAFQLQLSEIDKARELAERALKTINYREEAEKLNIWIAMLNLENTFGS--EETLEDVFT 1515

Query: 1741 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ- 1798
            R+ QY D   +H  L+G+Y+ +E+   A EL     KKF      +W+     +L Q + 
Sbjct: 1516 RSCQYMDSFTMHSKLIGIYQLSEKFDKASELFKITTKKFGSEKTSIWVSWASFVLSQNEP 1575

Query: 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1858
            + V  ++  AL SLP+  HI+ + + A LEF  G  +RGRS+FEG+L++ PKR D+W++Y
Sbjct: 1576 DQVGTILSSALKSLPKRNHIEVVRKFAQLEFSEGNPERGRSLFEGLLADAPKRIDIWNVY 1635

Query: 1859 LDQEIRLGD-VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917
            LDQEI+  D    +  LFER I + +  K+ KF F K+L++E+S  +E+  +YVK KA E
Sbjct: 1636 LDQEIKQKDNKSRVEELFERVIKMKITRKQAKFFFNKWLQFEESNNDEKMTDYVKAKASE 1695

Query: 1918 YVE 1920
            YVE
Sbjct: 1696 YVE 1698



 Score =  167 bits (423), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 189/769 (24%), Positives = 341/769 (44%), Gaps = 92/769 (11%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL----------- 171
           +   N+  G  L G +  + + DL I    GL G   L   ++ L  +L           
Sbjct: 103 LNFNNVKEGTILLGQIDSITKNDLRITFTDGLSGFVDLTHISEQLTSLLEDIDEDMDSDS 162

Query: 172 ---DNEIEANED----NLLPTI---FHVGQLVSCIVLQLDDDKKEIGKRK--IWLSLRLS 219
              D E E+++D      LP +   F VGQ + C V +    K +  K+K  I L++  S
Sbjct: 163 KEDDAEYESSDDESEQKSLPNLRHYFKVGQWLRCAVTKNTALKPKNAKQKKRIELTIEPS 222

Query: 220 LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-L 278
           ++     +E + +  ++   V+SIEDHG  L  G+PS TGF+ + +       ++KPG +
Sbjct: 223 VV-NNFDVEDINKNTIIQCSVESIEDHGATLDLGVPSLTGFIAKKDCTNFD--ELKPGSV 279

Query: 279 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
            +  + +  DR+   + +S D  +V K     +   SID ++PG +V    + I ++G++
Sbjct: 280 FISCITKKTDRS---IVVSQDF-SVKKNKMTSIS--SIDSVLPGQVVDLLCEEITDSGIV 333

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL---FVDPTSRAVGLTLNPYL 395
                  +  +   HLQ TF   + K+ ++    +  RIL         R + L+  P++
Sbjct: 334 GKVFGSISAFIGKPHLQ-TFSEEDIKHKFSLGSNIPCRILASVINKSGDRVLILSTLPHV 392

Query: 396 LHNRAPPSHVK------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD----- 444
           +        ++      +G I D+S V   D              S+  Y+ ISD     
Sbjct: 393 ISLNNTLGSIESLEAFPIGFIIDESVVKGRD--------------SSYLYLAISDKFIGR 438

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           V +  + ++ K+ K    ++ R++G+   + +          +       D+  G V   
Sbjct: 439 VHQSNLGEIIKQDK----LKSRVIGYDVADCIFELTTDPEKLKLKYIRSKDIPVGEVFNN 494

Query: 505 -KVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RI 561
            +++   S G  ++  GG   A  P  H+S+  ++ P +KFK+ ++   R+L V +   I
Sbjct: 495 CEILKASSSGVELKLLGGQFTAFVPPLHISDIRLIYPERKFKIASKTKCRILNVDNHGHI 554

Query: 562 TVTHKKTLVKS---KLAILSSYAEA----TDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
             T KK+LV     +  ++ S+  A         T G +     HGC + F+ GV GF P
Sbjct: 555 IATMKKSLVNDEELEKPVIESFETAKSIKNKNEKTVGTVQSFNGHGCVIMFFGGVTGFLP 614

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLG 670
           +SE+             +GQ V+ +++      RRI ++  +      +     + +K+G
Sbjct: 615 KSEVSEVFVKRAEDHLRLGQTVQVKVLEVDEERRRIIVTCKVSNEEAQQQKSIIESLKIG 674

Query: 671 -SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLL 728
            S++  VV   T ++V+V +   G  +G I   H++D  +E        I+ G +   L+
Sbjct: 675 QSIIETVVVEKTKDSVIVEIPDVGI-RGVIYVGHISDERIEQCRAEIKKIRIGSKLTGLV 733

Query: 729 VLDNESSNLL-LSAKYSLINSAQ--QLPSDASHI---HPNSVVHGYVCNIIETGCFVRFL 782
           +  +  + +  LS K SL+  AQ  +LP+  + I        +HGYV +I  TG FV F 
Sbjct: 734 IDKDSRTQIFNLSLKKSLMKDAQNKRLPTTFAEITKFKKTDPLHGYVKSISSTGVFVAFT 793

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G+  G    S AV+ ++ D+ K +Y  QSV + +L  + +  R  L+LK
Sbjct: 794 GKFVGLVLPSYAVESRQVDIEKAFYSNQSVTAYLLRTDDDNERFLLTLK 842



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 17/255 (6%)

Query: 589  THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG---QVVKCRIMSSIP 645
            T G I K+      +   N + G +   E  L+   EP      G   + VK +I S I 
Sbjct: 1068 TIGKIVKVTPKYLLIELENKITGISTALE-ALNDFTEPLDQVFAGKENEFVKAKITSVIA 1126

Query: 646  ASRRINLSFMMKPTRV----SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIP 700
              +++ L      + V    S  DL K+G +V+G+V  VT   + V++   G S +  +P
Sbjct: 1127 DEKKVQLQLAEDESTVQKITSHSDL-KVGEVVNGLVKTVTDKGLFVFL---GKSVEAFVP 1182

Query: 701  TEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
               L+D   +    K   KP       +V  NE   +LL+ + + +N   ++  + S I 
Sbjct: 1183 VSKLSD--SYLKEWKKFYKPMQPVVGKIVSCNEDDRILLTLRETEVNGDLKVLKNYSDIK 1240

Query: 761  PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
            P  + +G V N+ + G FV+      +TG A  ++  D    D+   + VG  V++ +L 
Sbjct: 1241 PGDIFNGTVRNVTDFGVFVKLDNTANVTGLAHITEIADEVPEDIQSIFGVGDRVKAYVLK 1300

Query: 819  VNSETGRITLSLKQS 833
             N E  +++LSLK S
Sbjct: 1301 SNPEKKQLSLSLKAS 1315



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 3/168 (1%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            + +HSD+K G VV G V  V   G  V     V+A  P+  +S+  + +  K +K    +
Sbjct: 1145 ITSHSDLKVGEVVNGLVKTVTDKGLFVFLGKSVEAFVPVSKLSDSYLKEWKKFYKPMQPV 1204

Query: 550  VFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN- 607
            V +++   +  RI +T ++T V   L +L +Y++     I +G +  +   G FV+  N 
Sbjct: 1205 VGKIVSCNEDDRILLTLRETEVNGDLKVLKNYSDIKPGDIFNGTVRNVTDFGVFVKLDNT 1264

Query: 608  -GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              V G A  +E+  +   +  S++ VG  VK  ++ S P  ++++LS 
Sbjct: 1265 ANVTGLAHITEIADEVPEDIQSIFGVGDRVKAYVLKSNPEKKQLSLSL 1312



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 121/577 (20%), Positives = 230/577 (39%), Gaps = 81/577 (14%)

Query: 236  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRT 290
            L  YVKSI   G  + F    F G +  +   E+  +D++        +   ++R+ D  
Sbjct: 776  LHGYVKSISSTGVFVAF-TGKFVGLVLPSYAVESRQVDIEKAFYSNQSVTAYLLRTDDDN 834

Query: 291  RKVVYLSSDP------DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 344
             + +     P      +T+S     D    S+  +  G ++  +++ + +N + +     
Sbjct: 835  ERFLLTLKAPKVEKAAETISAENIIDTSIKSVKDIKLGKILDAKIKGVKKNQLNIILADN 894

Query: 345  FTGTVDIFHLQNTF--------PTTNWK------------NDYNQHKKVNARILFVDPTS 384
              G VDI  + + +        P +++K            +D   HK +     FV  T 
Sbjct: 895  VHGRVDISEVFDNYNDIKDKKHPLSHYKANDKVRVKIIGHHDLKSHKSLPITHNFVKGT- 953

Query: 385  RAVGLTLNPYLLHNRAPPSHVKVGDIYD----QSKVVRVDRGLGLLLDIPSTPVSTPAYV 440
                LT+ P  L ++     VK  DI D       +  V+      L +  TP +  A +
Sbjct: 954  -VFELTMKPSQLKSK----DVKELDIRDITVGDEIIAFVNNYQNSTLWLTVTP-TIKAKL 1007

Query: 441  TISDVAEE---EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
            +I D++EE    ++ +E  +  GS ++V + G    +     IL+ +   G + +  D+K
Sbjct: 1008 SIFDLSEETLMNIKNVEDDFPLGSVLKVNVTG----KDQNKSILQVTQRNGKINSIDDLK 1063

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKAL-CPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
             G    GK++ V     +++    +  +   L  +++F   +P  +   G E  F    V
Sbjct: 1064 VGGHTIGKIVKVTPKYLLIELENKITGISTALEALNDF--TEPLDQVFAGKENEF----V 1117

Query: 557  KSKRITVTHKKTLVKSKLA-------ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            K+K  +V   +  V+ +LA        ++S+++     + +G +  +   G FV     V
Sbjct: 1118 KAKITSVIADEKKVQLQLAEDESTVQKITSHSDLKVGEVVNGLVKTVTDKGLFVFLGKSV 1177

Query: 610  QGFAPRSELGLDPGCEPSSMYH-----VGQVVKC----RIMSSIPASRRINLSFMMKPTR 660
            + F P S+L      E    Y      VG++V C    RI+ ++   R   ++  +K  +
Sbjct: 1178 EAFVPVSKLSDSYLKEWKKFYKPMQPVVGKIVSCNEDDRILLTL---RETEVNGDLKVLK 1234

Query: 661  VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
               D  +K G + +G V  VT   V V +       G      +AD +     ++S+   
Sbjct: 1235 NYSD--IKPGDIFNGTVRNVTDFGVFVKLDNTANVTGLAHITEIADEVPED--IQSIFGV 1290

Query: 721  GYEFDQLLVLDN-ESSNLLLSAKYSLINSAQQLPSDA 756
            G      ++  N E   L LS K S  N+ + +   A
Sbjct: 1291 GDRVKAYVLKSNPEKKQLSLSLKASHFNTNETITEKA 1327


>gi|409051813|gb|EKM61289.1| hypothetical protein PHACADRAFT_168722 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1480

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 343/1222 (28%), Positives = 593/1222 (48%), Gaps = 142/1222 (11%)

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            S+ + + P S+V   + ++  TG  ++ LG   G   +     G   D+ + + VGQ V+
Sbjct: 339  SNTTSVVPGSLVSALITSVQPTGLNLQVLGFYNGTIDQFHLPPG---DVEENFKVGQKVK 395

Query: 814  SNIL-DVNSET-GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 871
            + IL D+   T  R  LSL     S TD S       ++      Q+S H        E 
Sbjct: 396  ARILYDIAPSTPSRFALSLADHVVSMTDKS-------VDVSEDAKQTSLH--------EA 440

Query: 872  FIIGSVIEGK--VHESNDFGVVVSFEEHSDVYGFITHHQLAGATV----------ESGSV 919
            F IG  ++    +    + G++V  E    V GF+   Q++   V          + G++
Sbjct: 441  FTIGVPVDPMKVIRVEPERGLIV--EVTPTVEGFVHISQVSDEHVPMLSASSGPWKVGTM 498

Query: 920  IQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
             +A +      + L+ LS+K +V   +F +                  ++ V + +   V
Sbjct: 499  HRARVTGYHPFDGLLQLSMKPSVLEQKFLQVG----------------EVKVGEVIKGTV 542

Query: 979  EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLL 1038
            + + ++ L +S+      + + +       K PQK+F  G S+   ++ +       R  
Sbjct: 543  KKLTDSALFVSISGNVDGVIWPNHYADIHLKHPQKRFKPGGSIKCRILVVDPE----RKR 598

Query: 1039 LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
            ++L A      SS            G +  A + ++    L+++F       + I E ++
Sbjct: 599  VVLTAKKTLIDSSLPIVASLDDVKEGLVTHAVVFKVSEKSLQVEFYNNLKAIVPIREASE 658

Query: 1099 DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS--IKPSMLTVSEIGSKLLF 1156
                 + +L + F +G+ V  RII+ + +     S + + S   K ++  +         
Sbjct: 659  ---TTISSLSAAFPLGKVVQVRIISCNAETGRIVSSIRQASANFKAAITAIQ-------- 707

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR--FHIGK 1214
               DV IG  V G V ++  E A++T+       L  L++      +   Q R    +G 
Sbjct: 708  ---DVEIGHSVEGVVSEIQKEKAIVTLKPTQVRALLSLNNLANRRGIAVAQLRSSLKVGD 764

Query: 1215 AVTGHVL-SINKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
             +   V+ S N EK  + +  +P + + +  K+  I        +  G IVGGR+ + + 
Sbjct: 765  KLMDLVVTSRNPEKGFVLVATKPKEKEEVLQKSALILES-----VQIGQIVGGRVIRHIR 819

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVS-DPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
               G +V++   + G +H T++ +   S  P    D     K  V+ I    R    + L
Sbjct: 820  A--GALVKLTSRISGILHPTDVSDDYESGTPFPPVD--TVFKAAVIGIDTDKRT---LTL 872

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
            S R S+         + S  V      +  + D+     V+G++K+V   G F+ L R +
Sbjct: 873  STRRSV--------MNPSVHVPVADPVINDVSDMKAGSTVRGFIKSVAEHGLFVTLGRNI 924

Query: 1392 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1451
            DA+V +  L D +V+  +  F   +LV GR+LSV    K+VE++ ++SDS  ++Q  I  
Sbjct: 925  DARVQIKELFDDFVKDWKSRFQANQLVKGRILSVNVEKKQVEMSFRSSDSSRSAQLTIK- 983

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEK 1508
            LS+L  G  V   +K++  YGLF+ +E + + GLCH SELS++   ++      +R  +K
Sbjct: 984  LSDLSEGQKVDAVVKKIADYGLFLEVEGSKVRGLCHKSELSDNPAADVTMALRSFRESDK 1043

Query: 1509 VKVKILKVDKEKRRISLGMKSSYFKND------------ADNLQMSSEEESDEAIEEVGS 1556
            VK  +L VD EKRRIS G+K SYF  +             ++L +  EE   E +E +G+
Sbjct: 1044 VKAVVLTVDSEKRRISFGLKPSYFVEEDFQEAESESGAEQESLGVIDEESDREHVEGIGN 1103

Query: 1557 YNRSSLLENSSVAVQD-------MDMESEDGGSLVLAQIESRASVPPLEV----NLDDE- 1604
                      +V  ++       MD++ +  GSLV A+  S+ +  P  +     LDD  
Sbjct: 1104 EGSDEEKNKETVNAEEVVDEDETMDVDVDVSGSLV-ARKGSQTNAGPSAIRSVLKLDDGF 1162

Query: 1605 -----QPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPR 1659
                 Q D+D  +      + E ++ DE      +K++ +E EQ++ A     L+   P 
Sbjct: 1163 QWSTVQQDVDVEM-----ESSEKESGDEDQPSKKRKRKHKEIEQDLTAD----LQTKTPE 1213

Query: 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1719
            +  +FER++  SPNSS++WI+YM+F + +++++KAR IA+R+L+TIN REE EKLN+WVA
Sbjct: 1214 SNADFERILLGSPNSSYLWIQYMSFQIQLSEIDKAREIAQRSLKTINFREEREKLNVWVA 1273

Query: 1720 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1779
              NLEN YG   EE++   F+ A ++ D K VHL +  ++E++E+ + A+E   +  KKF
Sbjct: 1274 LLNLENVYGT--EESLEVTFKDAARHNDSKTVHLRMAAIFEQSEKIEKAEEQHRRTAKKF 1331

Query: 1780 KHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1838
             HS KVW    +  L++ + E  +A++ R+L SL + KH+K IS+ A LE+K G  +RG+
Sbjct: 1332 GHSSKVWTLFAEHYLRRGKLEDARALLPRSLQSLEKQKHLKTISKFAQLEYKLGDPERGK 1391

Query: 1839 SMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898
            ++FEG++  +PKR D+WSIY+D E   GD+  +R LF+R ++  +   K K  FKK+LE 
Sbjct: 1392 TIFEGVMESHPKRWDIWSIYIDMEAGQGDIMNLRNLFDRVLAQKMTSHKAKSFFKKWLEL 1451

Query: 1899 EKSVGEEERIEYVKQKAMEYVE 1920
            E+ +G+EE    VK KA+E+ +
Sbjct: 1452 ERRIGDEEGAGIVKAKAIEWTQ 1473



 Score =  209 bits (533), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 237/918 (25%), Positives = 403/918 (43%), Gaps = 116/918 (12%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           MAA ++++   S+   PK  K +K   ++ K+Q      AQ  +    ++V  FPRGGG 
Sbjct: 1   MAAGTKRANDDST--APKAKK-TKVDHRSRKRQSLAEKSAQPASNTLAEEVD-FPRGGGT 56

Query: 61  SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLP 120
           S T  E   I AE  A  EA E  L K+N  K    E++ +E    +  +  DG    L 
Sbjct: 57  SFTPIEVKAIRAE--AVKEANEE-LFKENAVKASHREKRKSEPKKKVKKITADGKPDTLV 113

Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG-------LARAADALDPILDN 173
           R  + +  K I  GMK++G V  V    L++ LP  L          ++    L+ + D 
Sbjct: 114 RVEH-LNYKRIIVGMKIFGQVMSVEPLALIVSLPNQLLAHIPITNITSQLTSLLESMDDE 172

Query: 174 EIEANEDNL-------------LPTIFHVGQLVSCIVLQLDD-------------DKKEI 207
           E E   D               L  IF  GQ V  +V  +               D+ + 
Sbjct: 173 EPEDVSDESDEEGPSMRRQVPELSEIFRPGQYVRAVVTAVHTAGSTDTVGFSRTRDESQK 232

Query: 208 GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP----- 262
             R++ LSL    + +G++   V+ G   +A VKS+EDHGYIL  G+    GFL      
Sbjct: 233 ASRRVELSLFPDKVNEGVAKADVKAGFACSAAVKSVEDHGYILDMGISDILGFLTFKDAQ 292

Query: 263 RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPG 322
           R+ + E   + +  G LL   V  +    +   +S  P+ V      ++   +   +VPG
Sbjct: 293 RSRVGE---MRLSIGHLLDVCVTKLSSNGRTCNVSISPEFVRSTSLTEVSNTT--SVVPG 347

Query: 323 MMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VD 381
            +VS  + S+   G+ L  L ++ GT+D FHL    P  + + ++   +KV ARIL+ + 
Sbjct: 348 SLVSALITSVQPTGLNLQVLGFYNGTIDQFHL----PPGDVEENFKVGQKVKARILYDIA 403

Query: 382 PTSRA-VGLTLNPYLLHNRAPPSHVK-------------VGDIYDQSKVVRVDRGLGLLL 427
           P++ +   L+L  +++        V              +G   D  KV+RV+   GL++
Sbjct: 404 PSTPSRFALSLADHVVSMTDKSVDVSEDAKQTSLHEAFTIGVPVDPMKVIRVEPERGLIV 463

Query: 428 DIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKAS 484
           ++  TP +   +V IS V++E V  L      +K G+  R R+ G+   +GL    +K S
Sbjct: 464 EV--TP-TVEGFVHISQVSDEHVPMLSASSGPWKVGTMHRARVTGYHPFDGLLQLSMKPS 520

Query: 485 AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK 544
             E       +VK G V+KG V  +      V   G V  +    H ++  +  P K+FK
Sbjct: 521 VLEQKFLQVGEVKVGEVIKGTVKKLTDSALFVSISGNVDGVIWPNHYADIHLKHPQKRFK 580

Query: 545 VGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
            G  +  R+L V  + KR+ +T KKTL+ S L I++S  +  + L+TH  + K+ +    
Sbjct: 581 PGGSIKCRILVVDPERKRVVLTAKKTLIDSSLPIVASLDDVKEGLVTHAVVFKVSEKSLQ 640

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS-------IPASRRINLSFM 655
           V FYN ++   P  E         S+ + +G+VV+ RI+S        + + R+ + +F 
Sbjct: 641 VEFYNNLKAIVPIREASETTISSLSAAFPLGKVVQVRIISCNAETGRIVSSIRQASANFK 700

Query: 656 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-M 714
              T + +   V++G  V GVV  +     +V  +     +  +   +LA+    A   +
Sbjct: 701 AAITAIQD---VEIGHSVEGVVSEIQKEKAIV-TLKPTQVRALLSLNNLANRRGIAVAQL 756

Query: 715 KSVIKPGYEFDQLLVL--DNESSNLLLSAKYS-----LINSAQQLPSDASHIHPNSVVHG 767
           +S +K G +   L+V   + E   +L++ K       L  SA  L S    +    +V G
Sbjct: 757 RSSLKVGDKLMDLVVTSRNPEKGFVLVATKPKEKEEVLQKSALILES----VQIGQIVGG 812

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS-------VRSNILDVN 820
            V   I  G  V+   R++G             D+S  Y  G          ++ ++ ++
Sbjct: 813 RVIRHIRAGALVKLTSRISGIL--------HPTDVSDDYESGTPFPPVDTVFKAAVIGID 864

Query: 821 SETGRITLSLKQSCCSST 838
           ++   +TLS ++S  + +
Sbjct: 865 TDKRTLTLSTRRSVMNPS 882


>gi|310789617|gb|EFQ25150.1| S1 RNA binding domain-containing protein [Glomerella graminicola
            M1.001]
          Length = 1772

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 364/1386 (26%), Positives = 643/1386 (46%), Gaps = 172/1386 (12%)

Query: 608  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK----PTR 660
            G+ GF   S +    +D   E S  Y VG   + R++          LSF  +    P  
Sbjct: 467  GISGFVHISRVKDGKVDALYETSGPYKVGSEHRGRVVGYNSLDGMFLLSFQQQVLDQPFI 526

Query: 661  VSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 715
              ED  V +G +VSG V+  ++  N V  ++  +A+G S G +   HLAD  L+H    +
Sbjct: 527  RLED--VPVGEVVSGKVEKVIIGENGVSGLIVKLAEGIS-GYVHDSHLADVKLQHP---E 580

Query: 716  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
               + G     ++L +      L L+ K +L+NS   +  +   +       G + +   
Sbjct: 581  KKFREGITVKARVLSVRPRKRQLRLTLKKTLVNSDAPIVKNYDEVEVGMQTPGTITSFTA 640

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             G  + F G + GF P S+  +    D  + + +GQ+V  ++LDVN E  R+ +S K   
Sbjct: 641  GGAQLEFFGGIRGFLPVSQMSEAYIKDPREHFRIGQAVSVHVLDVNPEERRMVVSCKDPS 700

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
                        F L+++ A+              +   +G ++  KV +  +  V V  
Sbjct: 701  A-----------FGLDKQAAL--------------KALKVGDIVSAKVSQKTEDEVFVDL 735

Query: 895  EEHSDVYGFITHH---------QLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFID 944
            EE        T H         Q A   +  G+ + +  +LD  +  R V LS K  F+ 
Sbjct: 736  EESGLKAIIRTGHLSDKSASKTQAAWKRINVGNTLSELVVLDKNERRRAVILSQKPSFV- 794

Query: 945  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 1004
                     +A K  +    ++D  V     A V  +    + +       +I   +   
Sbjct: 795  ---------EAGKNGKLLSNAEDATVGTVAPAYVREIGPYAVYVQFGGSLTAILPKTKLP 845

Query: 1005 YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA--------K 1056
             + Q+         QS+   +++  S     R+++   +  E E  +++ A        K
Sbjct: 846  KDAQEKEAFGMRKHQSIEVKIVS--SKPEQNRIIVAPASADEPEPVAAESAVNSVDDSIK 903

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLFSNFKIG 1114
              +   +G+++ A++T +K  +L +K      GRI +++  D   ++   +N     K  
Sbjct: 904  TINDVALGTILNAKVTSVKDTQLNVKVADNIQGRIDVSQFYDKWDDITNRKNPLQKVKAN 963

Query: 1115 QTVTARIIAKSNKPDMK--------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQR 1166
            + +  R I   +  + +           L E + K S L   E+    L     + +G  
Sbjct: 964  EIIRVRAIGIHDSKNYRFLPFSHRSSHSLIEFTAKKSDLEAKEVE---LLSYDKIEVGSS 1020

Query: 1167 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
               +V         + +S  ++ ++ I+D + + S     ++ F +G A+   VLS++ E
Sbjct: 1021 HVAFVNNHGKNCLWVNLSPSVRGRISIMDVSDDLSLAGNLEKHFPVGSALKVRVLSVDAE 1080

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
            K  L L  R      S  + +++ D+++  +     + GR++K+      ++V++G  + 
Sbjct: 1081 KGHLDLSSRS-----STGSTEVTWDSLKKNV----ALPGRVTKVTDR--SVMVKLGDSVS 1129

Query: 1287 GRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1346
            G VH  +L +         Y++G+ ++  V+E+ ++ +    + LS R S   +SST   
Sbjct: 1130 GPVHLVDLSDNYDEANTLKYNKGEIIRVSVVEVDKSNK---RLRLSTRPSRI-LSST--- 1182

Query: 1347 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
              S  VD   + + K+  +S   I++G+VKNVT KG F+ L   + A V +SNLSD Y++
Sbjct: 1183 --SPVVD---REITKLSQISSGDIIRGFVKNVTDKGVFVQLGGTVSALVKISNLSDRYIK 1237

Query: 1407 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
              +  F + +LV GRV++V+    +VE++LK S         +    ++  G IV G+++
Sbjct: 1238 DWKGNFQVDQLVKGRVINVDAAINQVELSLKASVVENDYTPPVT-YKDMKEGQIVTGKVR 1296

Query: 1467 RVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1525
            +VE +G FI ++N+ N+ GLCH SE++E  V++   +Y  G+ VK K+L VD EKRRI+ 
Sbjct: 1297 KVEEFGAFIVVDNSLNVSGLCHRSEMAEKPVEDARRLYSEGDVVKAKVLSVDDEKRRITF 1356

Query: 1526 GMKSSYFKNDAD--NLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG-S 1582
             ++ S+F  D+D  ++   +E +SDE                      D D+E  DGG  
Sbjct: 1357 SLRPSHFDEDSDMEDVNGGAELDSDE----------------------DSDIEMGDGGVQ 1394

Query: 1583 LVLAQIES---------RASVPPLEVNLDDEQPDMDNGISQNQGHTD-EAKTIDEKNNRH 1632
            L ++  ++          A     + + + ++ D   G   + G  D      D++++  
Sbjct: 1395 LTISGTDNIDDSDEEDESAEEDEDDSDAEMDEVDTATGKGLSGGKYDWTGDAFDDESDNE 1454

Query: 1633 AKKKEKEERE-----------QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKY 1681
            +  K K+ +            Q  R A+   L+   P+T  ++ERL+   P+SS +WI+Y
Sbjct: 1455 STGKSKKSKATGKKEKKKSGIQVDRTAD---LDAHGPQTATDYERLLLGEPDSSQLWIEY 1511

Query: 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741
            MA  + ++++ KAR +AERA++TINIRE+ EKLN+W+AY NLE  YG   + +  +VF+R
Sbjct: 1512 MALQMKISELAKAREVAERAIKTINIREQTEKLNVWIAYLNLEVAYGT--KASTEEVFKR 1569

Query: 1742 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRL--LKQQQ 1798
            A QY D ++VH  L  +Y +  + K AD++   ++ KFK  S KVW      L     + 
Sbjct: 1570 ACQYNDEQEVHERLASIYIQCGKLKQADDVFQSLVAKFKSKSPKVWENYAHFLHVTMNEP 1629

Query: 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWS 1856
            +  +A++ RA  +L      + ++    LEFK  NG A+RGR+ FE IL+ +PKR DLW+
Sbjct: 1630 DRARALLPRATQALEERHTAQLMASFGALEFKSPNGDAERGRTTFETILATWPKRFDLWN 1689

Query: 1857 IYLDQEIRLGDVDL--IRGLFERAI-SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1913
               D EI   + D   IR +FER   +  L PKK    FK++ E+E+ +  + R + V  
Sbjct: 1690 QLADLEISAAEPDTTAIRDVFERGTKAKGLKPKKAMKWFKRWAEWEQKLSPKGR-DKVMA 1748

Query: 1914 KAMEYV 1919
            KA E+V
Sbjct: 1749 KAQEWV 1754



 Score =  219 bits (558), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 330/1417 (23%), Positives = 600/1417 (42%), Gaps = 155/1417 (10%)

Query: 2    AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPP--DDDVPVFPRGGG 59
            AA + K  + S +D P          K  K    DA   +  A+     D+ P+FPRGGG
Sbjct: 18   AAKASKVSRPSKRDAP---------IKEKKTATEDAPAPRPPAVSALLKDEEPLFPRGGG 68

Query: 60   HSLTQRERDEI--------HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
              LT  E+ +I          E    F+   +G  KK K++K K  +      D+     
Sbjct: 69   SVLTPLEQKKITIEAKADAAKEEAEAFDTNVKGKAKKEKRRKAKETKDLKPARDE----- 123

Query: 112  GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALD 168
             D +          +  K +  G  + G +  ++   L + LP  L G   +A  +D ++
Sbjct: 124  -DAVK------IEGLNFKRLVKGSLVLGQITHIDSVQLTVALPNNLTGHVSIASISDTIN 176

Query: 169  PILDNEIEANEDNL------------LPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLS 215
              L+ +++A ++              L T+F VGQ V   VL   ++      KR+I LS
Sbjct: 177  SKLEKDVDAADEESDDDDGDDDEEIDLQTMFKVGQYVRAHVLSTAEESGSGKAKRRIELS 236

Query: 216  LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAEN-SGID 273
            LR +    G++ + +     L A + S++DHGY +  G+     GFL +  +  +     
Sbjct: 237  LRPADANSGITGDDIVAYTTLMASIASVQDHGYEMDLGIDGDLKGFLAKKEVGPDMDEAS 296

Query: 274  VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
            ++PG +   VV+S+  T  VV LS+DP  +           +I+  +PG +    +  + 
Sbjct: 297  LRPGAVCLCVVKSV--TGIVVQLSTDPLKLGNTSLVASTAPTINSFLPGSLADVLLTEVT 354

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTL 391
              G+    L +   T D+ H        + +  Y    +V ARI+   P +R   +G++L
Sbjct: 355  SRGLQGKLLGHLPVTADLIHSGVGPDGVDLEAKYTVGSRVKARIICNFPAAREPKLGISL 414

Query: 392  NPYLLH-----------NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYV 440
             P++++            +AP   + +    ++  V +V+  +GL +D     +S   +V
Sbjct: 415  LPHIVNLQPKSSGKGSRAKAPLDLLPIASFVEKCTVRKVEPEIGLYVDAGVPGIS--GFV 472

Query: 441  TISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
             IS V + +V  L +    YK GS  R R++G+  L+G+     +    +       DV 
Sbjct: 473  HISRVKDGKVDALYETSGPYKVGSEHRGRVVGYNSLDGMFLLSFQQQVLDQPFIRLEDVP 532

Query: 498  PGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
             G VV GKV  V        G IV+   G+       H+++ ++  P KKF+ G  +  R
Sbjct: 533  VGEVVSGKVEKVIIGENGVSGLIVKLAEGISGYVHDSHLADVKLQHPEKKFREGITVKAR 592

Query: 553  VLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            VL V+ ++  + +T KKTLV S   I+ +Y E    + T G IT     G  + F+ G++
Sbjct: 593  VLSVRPRKRQLRLTLKKTLVNSDAPIVKNYDEVEVGMQTPGTITSFTAGGAQLEFFGGIR 652

Query: 611  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----D 665
            GF P S++      +P   + +GQ V   ++   P  RR+ +S    P+    D      
Sbjct: 653  GFLPVSQMSEAYIKDPREHFRIGQAVSVHVLDVNPEERRMVVS-CKDPSAFGLDKQAALK 711

Query: 666  LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEF 724
             +K+G +VS  V   T + V V +   G  K  I T HL+D     T      I  G   
Sbjct: 712  ALKVGDIVSAKVSQKTEDEVFVDLEESGL-KAIIRTGHLSDKSASKTQAAWKRINVGNTL 770

Query: 725  DQLLVLD-NESSN-LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             +L+VLD NE    ++LS K S + + +  +L S+A      +V   YV  I     +V+
Sbjct: 771  SELVVLDKNERRRAVILSQKPSFVEAGKNGKLLSNAEDATVGTVAPAYVREIGPYAVYVQ 830

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F G LT   P++K     +   +      QS+   I+    E  RI ++      +S D 
Sbjct: 831  FGGSLTAILPKTKLPKDAQEKEAFGMRKHQSIEVKIVSSKPEQNRIIVA-----PASADE 885

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH--- 897
                      E +A   +       +K +    +G+++  KV    D  + V   ++   
Sbjct: 886  P---------EPVAAESAVNSVDDSIKTINDVALGTILNAKVTSVKDTQLNVKVADNIQG 936

Query: 898  -------SDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVF-IDRFR 947
                    D +  IT+ +     V++  +I+   + +  +K  R +  S ++   +  F 
Sbjct: 937  RIDVSQFYDKWDDITNRKNPLQKVKANEIIRVRAIGIHDSKNYRFLPFSHRSSHSLIEFT 996

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DY 1005
               S+ +A++ +       ++G      A V    +N L ++L P     I    VS D 
Sbjct: 997  AKKSDLEAKEVELLSYDKIEVGSSHV--AFVNNHGKNCLWVNLSPSVRGRISIMDVSDDL 1054

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGS 1065
            +     +K F  G ++   V+++   +  G L L  ++ + +   +    KK  +     
Sbjct: 1055 SLAGNLEKHFPVGSALKVRVLSV--DAEKGHLDLSSRSSTGSTEVTWDSLKKNVA----- 1107

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARIIA 1123
             +   +T++    + +K G    G +H+ +++D  D++N ++     +  G+ +   ++ 
Sbjct: 1108 -LPGRVTKVTDRSVMVKLGDSVSGPVHLVDLSDNYDEANTLK-----YNKGEIIRVSVVE 1161

Query: 1124 --KSNKPDMKKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
              KSNK          LS +PS +  + S +  + + +   +S G  + G+V  V ++  
Sbjct: 1162 VDKSNK-------RLRLSTRPSRILSSTSPVVDREITKLSQISSGDIIRGFVKNVTDKGV 1214

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
             + +   + A + I  S      +++++  F + + V G V++++     + L L+    
Sbjct: 1215 FVQLGGTVSALVKI--SNLSDRYIKDWKGNFQVDQLVKGRVINVDAAINQVELSLKASVV 1272

Query: 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1299
              +D T  ++  +M+    EG IV G++ K+      +VV    ++ G  H +E+    V
Sbjct: 1273 E-NDYTPPVTYKDMK----EGQIVTGKVRKVEEFGAFIVVDNSLNVSGLCHRSEMAEKPV 1327

Query: 1300 SDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
             D    Y EG  VK KVL +    R    +  SLR S
Sbjct: 1328 EDARRLYSEGDVVKAKVLSVDDEKR---RITFSLRPS 1361


>gi|156378172|ref|XP_001631018.1| predicted protein [Nematostella vectensis]
 gi|156218050|gb|EDO38955.1| predicted protein [Nematostella vectensis]
          Length = 1771

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 410/1553 (26%), Positives = 703/1553 (45%), Gaps = 201/1553 (12%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG--KKFKVGAELVF 551
            S + PGM+V  +V    S G IV F    +    + H+ E         K +K  ++ V 
Sbjct: 296  SSLLPGMLVNTRVSQCTSSGVIVSFLELFEGSVHILHLPENGGSGENLEKLYKKKSKHVA 355

Query: 552  RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCFVRFYNG 608
            R+L V  K+K ++++   ++++ KL    S +     +  +  IT+ ++  G      +G
Sbjct: 356  RILYVNPKNKVVSLSMLDSIIQFKLPSFESCS--IGDIFDNVTITRGDQGLGLLANVKDG 413

Query: 609  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI--MSSIPA--SRRINLSFMMKPTRVSED 664
            + GF   S++      +    Y  G   KCR+  M++I    S     S + KP    ED
Sbjct: 414  LNGFVHFSQVSDKQIEKLGKKYKAGTSHKCRVLGMNTIDGLLSLTTKKSIINKPFMRYED 473

Query: 665  DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKP 720
              +K GS+V G +  +T     + V    + KG +   HLAD    H E       V+K 
Sbjct: 474  --IKPGSIVEGTI--ITLEKFGMLVSVSDHIKGLVTNMHLADIILKHPEKKLTEGKVVKC 529

Query: 721  GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
                 ++L +D     L L+ K ++++S  Q+ +  S   P +  HG++ ++ E GC V 
Sbjct: 530  -----RVLTVDPGQRRLHLTHKKTMVSSTLQVITQYSDAKPGTTSHGFITSVREYGCLVT 584

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC--SST 838
            F   + G  P+ +    +  D    +Y+GQ +  +++  N +  ++ LSLK +    SST
Sbjct: 585  FYNNVKGLVPKDQLGIQESEDPRGVFYLGQVLTCHVISCNPDQQKLKLSLKANSANKSST 644

Query: 839  DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
              S       L+   A  ++   N S++K       G V+ G V     +GV V F    
Sbjct: 645  QVSLQTASTSLKNA-AESKTMVTNFSDIK------PGMVLPGFVKLLMGYGVFVEFA--P 695

Query: 899  DVYG-----FITHHQLAGAT--VESGSVIQAAILDVAKAERLVDLSLKTVFID---RFRE 948
             + G     FI +H ++ A    + G  + A + +V    +   +SLK   ++    +  
Sbjct: 696  GILGLAPNSFIANHFVSDAASHFKIGQTLVAQVNEVDAERQRFLVSLKQSDLNPGSDWTS 755

Query: 949  ANSNRQAQKKKRKRE------ASK--------DLGVHQTVNAIVEIVKENYLVLSLPEYN 994
            A +    ++   +R+      ASK         L V   +   V  VK+N + L+LP+  
Sbjct: 756  ATAGALLEEILSERKHILDELASKTEDVKNLLSLPVGSCIEGKVSKVKKNGISLTLPD-- 813

Query: 995  HSIGYASVSDYNTQKFPQK-QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 1053
                   +  +   +  Q    L G+ V   V+ L    +   L LL   +   +   +K
Sbjct: 814  ------GLKGFVFHQLAQGVSCLEGEVVQGCVLDLDVKKSVVELTLLPDVVKGRQNQKNK 867

Query: 1054 RAKKKSSYDVGSLVQAEITEIKPLELRLK-FGIGFH-GRIHITEVNDDKSNVVENLFSNF 1111
              + K    V  +VQ    E   + L    F IG+   ++H+ ++ D        +   F
Sbjct: 868  PKQMKPGQPVDFIVQLIKAEYMVVVLPCAAFKIGYAPAKMHLNDIRD--------VAKRF 919

Query: 1112 KIGQTVTARIIAKSNK----PDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQR 1166
             +GQ     I+  S+      + + S   + ++KP  +T  E+ S K L  + +V +GQ 
Sbjct: 920  NVGQKYRGSILESSSHCIVVSECQNS--SKENLKPGTVTSVEVRSIKPL--QMNVQLGQ- 974

Query: 1167 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--N 1224
            + G V+ V N              L   +S ++P         F +G+ +   +L     
Sbjct: 975  IHGRVH-VSNA----------ADDLIQGESPFKP---------FQMGQKIQAKILGFRDT 1014

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS--KILSGVGGLVVQIG 1282
            K    L L  R F   +++ ++  S   M +     ++VG      KI         +IG
Sbjct: 1015 KTHNFLPLTHRNFTRAVAELSLKPS---MVSKTSASEVVGAVYDEKKIED------FKIG 1065

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
              +   V  T   + C+   ++    G   + ++L  S  V+   H+  + +       +
Sbjct: 1066 DEVQAFVKSTS--DNCIWMAINTLVSG---RVELLHASNDVKVLRHLSSAFKPGNGHTCT 1120

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSRKLDAKVLLSNLS 1401
                D   +V      ++    LS + IV G V  V  + G FI L       V L++++
Sbjct: 1121 VLDVDKDHEVLNLSLTVKPDSQLSRDQIVPGRVTRVMPTSGLFIQLPLHKSGLVALTDIA 1180

Query: 1402 DGYVESPEKEFPIGKLV------AGRV--------------------------LSVEPLS 1429
            D + E+P   + + ++V      A R                           LS+ P S
Sbjct: 1181 DHFTENPTDGYKVKQIVRWLQSQADRTNPTDGYKVKQIVRCCILSKKDNGHYDLSLRP-S 1239

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
            +  E T +    ++ +  EI +L+ L VGDIV G +    + G+F+++   N+     + 
Sbjct: 1240 RTTEATTQEEKDKSRTDREIGSLAALDVGDIVRGYVSCATNIGVFVSL-GRNIKARVQIK 1298

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF--KNDADNLQMS----- 1542
             LS  +V   + ++  G+ V  K+L ++    +I L +K       + A N + +     
Sbjct: 1299 NLSHFYVKEWKPLFPVGKLVTGKVLSINPTNGQIELSLKGRDVGGPDPAPNPKQTEETGK 1358

Query: 1543 ---------------SEEESDEAIEEVGSYNRSSLLENSS------VAVQDMDMESEDGG 1581
                           +E ESDE +E +    R+   ++         + +    E EDG 
Sbjct: 1359 KRKKATKVKTVDAGEAEPESDEDVEAIVKRLRADESDDEQGPHESEESEECNSSEPEDGD 1418

Query: 1582 SLVLAQIES--RASVPPL-----EVNLDDEQPDMDNGISQ-NQGHTDEAKTIDEKNNRHA 1633
                +QI+   R  V        +   D  + ++DN   + N    +  + +  K  +  
Sbjct: 1419 ESTASQIKKIKRIQVSAGFNWSGDTEEDLGEANVDNSSDEKNDSENESIEQVSRKKTKRQ 1478

Query: 1634 KKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVE 1692
            K+  K+  E  +   E+ LL+ D  P   ++F+RLV SSPN+S  W++YMAF L   +++
Sbjct: 1479 KRAAKKAEEDFLYRTEQALLDTDHTPECAEDFDRLVLSSPNNSVTWLQYMAFHLHTTEID 1538

Query: 1693 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVH 1752
            KAR++AERAL+TI+ REE EKLNIWVA  NLEN YG   +E+++KVF+RALQ+ +PKKV 
Sbjct: 1539 KARAVAERALRTISFREEREKLNIWVALMNLENLYGT--QESLIKVFERALQHNEPKKVF 1596

Query: 1753 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811
              L+ +Y ++E+ +LA++L + M K+F  S KVW+   +  +K  + +  + ++QR L S
Sbjct: 1597 FHLITIYTQSEKTELAEKLFHTMTKRFSQSKKVWIEFGRFFMKTGKPDSARKLLQRGLKS 1656

Query: 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1871
            LP  KH++ I Q A++EFKNG   RG+++ E +LS YPKRTD+WS+Y+D   + G  D +
Sbjct: 1657 LPTRKHVETIVQFALMEFKNGDPQRGQTVLESVLSNYPKRTDIWSVYIDMMSKQGHPDTV 1716

Query: 1872 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            R +FER I ++L  +KMKFLFKKYL++E+  G+E  +E VK KAMEYVES +A
Sbjct: 1717 RQIFERVIHMNLSSRKMKFLFKKYLDFEREHGDEMSVEAVKTKAMEYVESKVA 1769



 Score =  326 bits (836), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 210/642 (32%), Positives = 344/642 (53%), Gaps = 37/642 (5%)

Query: 29  NSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEF----EAVERG 84
           ++K++   A ++ ++ LP   D   FPRGG  +L+  E   I  E + +       V+  
Sbjct: 14  SAKRRSTSAGKSTEVILPSHIDEIDFPRGGASTLSPLEVRRIKQEAEKDLLFGTTPVQEI 73

Query: 85  LHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEV 144
             KK + K    ERK N +  DLG   G+ ++         ++ K +  GMKL G V EV
Sbjct: 74  KKKKKRSKSLPAERKDNNSDADLGKTSGNHVAS--------LSFKKLCEGMKLLGAVKEV 125

Query: 145 NEKDLVICLPGGLRGLARAADA----LDPILDNEIEANEDNLLPTI---FHVGQLVSCIV 197
            E +L+I LP GL G     D     +  +  +  E   ++ +P++   F V  LV C+V
Sbjct: 126 GEFELIISLPNGLSGFVHILDINEKLMSALAKSSTEERIEDSIPSLGDLFTVNSLVVCVV 185

Query: 198 LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
            +L   K   G RK+ LSLR   +  G++   +  G VL   V S+EDHGY+L FG+P  
Sbjct: 186 KELLSSKH--GHRKVKLSLRPEDVNAGVT--NIVPGFVLPGCVSSVEDHGYVLSFGIPGK 241

Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV-SKCVTKDLKGISI 316
           TGFL +    + +G  +  G  L  +V S D T +V+ +S D D + S  ++ D+K +  
Sbjct: 242 TGFLSK----KKTGRVLVEGQYLNTIVESAD-TGRVIRVSVDQDKIKSAMISSDMK-VRF 295

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL-QNTFPTTNWKNDYNQHKKVNA 375
             L+PGM+V+TRV     +GV++SFL  F G+V I HL +N     N +  Y +  K  A
Sbjct: 296 SSLLPGMLVNTRVSQCTSSGVIVSFLELFEGSVHILHLPENGGSGENLEKLYKKKSKHVA 355

Query: 376 RILFVDPTSRAVGLTLNPYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
           RIL+V+P ++ V L++   ++  + P      +GDI+D   + R D+GLGLL ++     
Sbjct: 356 RILYVNPKNKVVSLSMLDSIIQFKLPSFESCSIGDIFDNVTITRGDQGLGLLANVKD--- 412

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494
               +V  S V+++++ KL KKYK G+  + R+LG   ++GL +   K S        + 
Sbjct: 413 GLNGFVHFSQVSDKQIEKLGKKYKAGTSHKCRVLGMNTIDGLLSLTTKKSIINKPFMRYE 472

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D+KPG +V+G +I ++ FG +V     +K L    H+++  +  P KK   G  +  RVL
Sbjct: 473 DIKPGSIVEGTIITLEKFGMLVSVSDHIKGLVTNMHLADIILKHPEKKLTEGKVVKCRVL 532

Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V    +R+ +THKKT+V S L +++ Y++A     +HG+IT + ++GC V FYN V+G 
Sbjct: 533 TVDPGQRRLHLTHKKTMVSSTLQVITQYSDAKPGTTSHGFITSVREYGCLVTFYNNVKGL 592

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            P+ +LG+    +P  ++++GQV+ C ++S  P  +++ LS 
Sbjct: 593 VPKDQLGIQESEDPRGVFYLGQVLTCHVISCNPDQQKLKLSL 634



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 149/704 (21%), Positives = 271/704 (38%), Gaps = 130/704 (18%)

Query: 321  PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
            PG +V   + ++ + G+++S   +  G V   HL +     + +    + K V  R+L V
Sbjct: 476  PGSIVEGTIITLEKFGMLVSVSDHIKGLVTNMHLADII-LKHPEKKLTEGKVVKCRVLTV 534

Query: 381  DPTSRAVGLTLNPYLL---------HNRAPPSHVKVGDI------------YDQSKVVRV 419
            DP  R + LT    ++         ++ A P     G I            Y+  K +  
Sbjct: 535  DPGQRRLHLTHKKTMVSSTLQVITQYSDAKPGTTSHGFITSVREYGCLVTFYNNVKGLVP 594

Query: 420  DRGLGLLLDIPSTPVSTPAYV----TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
               LG+        V     V     IS   +++  KL  K    +    ++     L+ 
Sbjct: 595  KDQLGIQESEDPRGVFYLGQVLTCHVISCNPDQQKLKLSLKANSANKSSTQV----SLQT 650

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
             +T +  A+  + +V   SD+KPGMV+ G V  +  +G  V+F  G+  L P   ++   
Sbjct: 651  ASTSLKNAAESKTMVTNFSDIKPGMVLPGFVKLLMGYGVFVEFAPGILGLAPNSFIANHF 710

Query: 536  IVKPGKKFKVGAELVFRV--LGVKSKRITVTHKKT-------------------LVKSKL 574
            +      FK+G  LV +V  +  + +R  V+ K++                   ++  + 
Sbjct: 711  VSDAASHFKIGQTLVAQVNEVDAERQRFLVSLKQSDLNPGSDWTSATAGALLEEILSERK 770

Query: 575  AILSSYAEATDRL----------ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 624
             IL   A  T+ +             G ++K++K+G  +   +G++GF    +L     C
Sbjct: 771  HILDELASKTEDVKNLLSLPVGSCIEGKVSKVKKNGISLTLPDGLKGFV-FHQLAQGVSC 829

Query: 625  EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNA 684
                +   G V+   +  S+     +      +  + ++   +K G  V  +V ++    
Sbjct: 830  LEGEVVQ-GCVLDLDVKKSVVELTLLPDVVKGRQNQKNKPKQMKPGQPVDFIVQLIKAEY 888

Query: 685  VVVYVIAKGYSKGTIPTE-HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKY 743
            +VV +    +  G  P + HL D       ++ V K      +  V      ++L S+ +
Sbjct: 889  MVVVLPCAAFKIGYAPAKMHLND-------IRDVAK------RFNVGQKYRGSILESSSH 935

Query: 744  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG--QRAD 801
             ++ S  Q  S   ++ P +V    V +I      V+ LG++ G    S A D   Q   
Sbjct: 936  CIVVSECQ-NSSKENLKPGTVTSVEVRSIKPLQMNVQ-LGQIHGRVHVSNAADDLIQGES 993

Query: 802  LSKTYYVGQSVRSNILDV--------------NSETGRITLSLKQSCCSSTDASFMQEHF 847
              K + +GQ +++ IL                N       LSLK S  S T AS +    
Sbjct: 994  PFKPFQMGQKIQAKILGFRDTKTHNFLPLTHRNFTRAVAELSLKPSMVSKTSASEVVGAV 1053

Query: 848  LLEEKI----------AMLQSSKHNGSELKWVEGFIIGSVIEGKV---HESNDFGVVVSF 894
              E+KI          A ++S+  N     W+    I +++ G+V   H SND  V+   
Sbjct: 1054 YDEKKIEDFKIGDEVQAFVKSTSDN---CIWMA---INTLVSGRVELLHASNDVKVL--- 1104

Query: 895  EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 938
                          L+ A  + G+     +LDV K   +++LSL
Sbjct: 1105 ------------RHLSSA-FKPGNGHTCTVLDVDKDHEVLNLSL 1135


>gi|326481772|gb|EGE05782.1| rRNA biogenesis protein RRP5 [Trichophyton equinum CBS 127.97]
          Length = 1738

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 372/1391 (26%), Positives = 646/1391 (46%), Gaps = 179/1391 (12%)

Query: 627  SSMYHVGQVVKCRIMSSIPASRRINLSFMM-------KPTRV----SEDDLVKLGSLVSG 675
            ++ YH G  +K R++++ P+S  + L F +        PT       +DDL  +  ++  
Sbjct: 426  TTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGGDDDLPLISDIIPE 485

Query: 676  VVDVVTPNAVVVYV-IAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE 733
            V       ++ +YV +     +G +    LAD  ++  + M+   K G   +  ++  + 
Sbjct: 486  VKVTYVDTSLGLYVQLGSTKHQGFVHLSRLADGRVDSISSMEGPYKVGSTHEGRIIGFSA 545

Query: 734  SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE-----TGCFVRFLGRLTGF 788
              NL L +    I   +Q       +   SVV G +  ++       G  V     ++G 
Sbjct: 546  MDNLFLVSLEPKI--IEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDNISGL 603

Query: 789  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 848
             P     D +     K +  G  V   IL V+ +  ++ L+LK+S  +S  A +      
Sbjct: 604  VPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAPW------ 657

Query: 849  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 908
                              K  E    GS   G + +  + G +V F  +  V GF+   +
Sbjct: 658  ------------------KDYESISAGSRSPGTLIKIQNNGAIVQF--YGAVKGFLPVSE 697

Query: 909  LAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
            ++ A ++        G V+    L V A+ ERLV +S K           S   A  +  
Sbjct: 698  MSEAYIKDPSQHFTVGQVVNVHALTVDAENERLV-VSCKD---------PSTVTADYQSA 747

Query: 961  KREASKDLGVHQTV-----NAIVEIVKENYLVLSLPEYNHSIGYAS--VSDYNTQKFPQK 1013
              +    L V  TV     + ++  ++++ L+  L   + S G ++   S +N  +  QK
Sbjct: 748  FEKVHPGLVVSGTVFEKSSDDLLIKLQDSGLIARLTSNHISDGSSAKRTSTFNRIRVGQK 807

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ETSSSKRAKKKSSYDV--------- 1063
              ++G  V       P    + R LL LK +S+  E S S  A +K +  V         
Sbjct: 808  --MDGLLVHKFA---PYKEDSDRFLLSLKPVSKPKEQSDSNPASEKKAPAVVLNNPIDEE 862

Query: 1064 ---------GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFK 1112
                     G + +A+IT +K  +L +       GRI I+E+ D   ++ +      +F 
Sbjct: 863  LKAMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEIFDSWEDIKDRKRPLKSFH 922

Query: 1113 IGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1163
                +  R++   +  + K         K  ++ELS K S L  SE    L  E+  + +
Sbjct: 923  SKDILPVRVLGIHDARNHKFLPISHRSGKVSVYELSTKRSCLQASEF-KPLHLEQ--LKV 979

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G R  G+V  +  +   L IS +++ +L I D + + S     Q+ F IG A+   V+ I
Sbjct: 980  GDRHIGFVNNIAEDCLWLNISPNVRGRLRITDISDDISIRGNIQKNFPIGSALQVAVIGI 1039

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            + EK  L L  R    G S KT+ +++      + +G I+ GR++KI      ++VQI  
Sbjct: 1040 DAEKNRLDLSARI---GSSAKTLTVAD------LSKGMILVGRVTKITDR--QVLVQIND 1088

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
            ++ G +   ++     +D  +  +   F K + L +         V++ + +     S  
Sbjct: 1089 NVVGAISLIDM-----ADDYTKVNPTNFHKNEALRVCV-------VDVDIPNKKISFSVR 1136

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
             S  LS+ +      +  I++L    IV+G+++ V + G F+ L   + A + +S+LSD 
Sbjct: 1137 PSKVLSSSLPVVDPEITSIDNLKVGQIVRGFIRRVDNIGVFVTLGHDVTAYIRVSDLSDS 1196

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
            +++  + EF + +LV GR+  V+  + ++++TLK S      +     L  L VG IV G
Sbjct: 1197 FLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLKKSVLDPNYKPPFT-LKELKVGQIVTG 1255

Query: 1464 QIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            ++++VE YG FI I+ + NL GLCH SE++E  V++   +Y   + VK K+LKVD EK +
Sbjct: 1256 KVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKVDLEKGQ 1315

Query: 1523 ISLGMKSSYFKNDADNLQMSSEEESDE--AIEEVGSYNRSSLLENSSVAVQDMDMESEDG 1580
            I+LG+K+SYF++         EEESD   + +E G      +L+    +  D+ M   D 
Sbjct: 1316 IALGLKASYFRD-------LPEEESDANCSDDEAGGI----MLDAGGDSDDDVSMGGVDL 1364

Query: 1581 GSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQN------QGHTDEAKTIDEKNNRHAK 1634
                  + E            +        G+  +       G  D+ +  DE       
Sbjct: 1365 EGEDDEEGEEEEDSDEDIEMENAPDSTKKGGLVTSGFDWTGDGDKDQNEAADESAEDDGA 1424

Query: 1635 KKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1694
             K K+ R+ EI+      L+ + P++  ++ERL+   P+SS +W+KYMAF L + +V+KA
Sbjct: 1425 TKRKKRRKAEIQVDRTGDLDANGPQSVADYERLLLGEPDSSLLWLKYMAFQLELGEVDKA 1484

Query: 1695 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1754
            R IA+RAL+T++I ++ EKLN+WVA  NLEN +GN  ++ + +VF+ A +Y D  +++  
Sbjct: 1485 REIADRALRTMSIGQDTEKLNVWVARLNLENTFGN--DDTLDEVFKSACEYNDAHEIYDR 1542

Query: 1755 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA---VVQRALLS 1811
            +  ++ ++ + + ADEL    +KK   S   +       L    E  Q    ++ RAL S
Sbjct: 1543 MTSIFIQSGKAEKADELFQTALKKKVSSTPDFFLNYANFLFDTMEAPQRGRDLLPRALQS 1602

Query: 1812 LPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1869
            LP H H++  S+   LEF+  NG  +RGR++FEG+LS +PKR DLW++ LD EI++GD +
Sbjct: 1603 LPPHTHVEVTSRFGQLEFRSPNGDIERGRTVFEGLLSSFPKRIDLWNVLLDLEIKVGDEE 1662

Query: 1870 LIRGLFERAISLS----------------LPPKKMKFLFKKYLEYEKSV---GEEERIEY 1910
             +R LFER + +                 L  K+ KFLFKK+L +E+ +   G+ + ++ 
Sbjct: 1663 QVRRLFERVLGIGHGIVAADGTKGGPKKKLKEKQAKFLFKKWLAFEEKIAPEGDTKMVDE 1722

Query: 1911 VKQKAMEYVES 1921
            VK +A +YV S
Sbjct: 1723 VKARAADYVRS 1733



 Score =  169 bits (427), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 212/837 (25%), Positives = 348/837 (41%), Gaps = 116/837 (13%)

Query: 3   ASSRKSQKKSSKDGPKFNKAS---------------KNQFKNSKKQINDAVEAQDLALPP 47
           +SS   +KK+  D  + N AS               K   K SKK  +   +A  +++  
Sbjct: 14  SSSSAPKKKAKVDAEELNGASKLKKKSKEPKEQKEQKEAVKASKKDTSTVSKAAPISMLR 73

Query: 48  DDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFE-------------------AVE--RG 84
           D+  P FPRGG + LT  ER +I   A  D  FE                   A E  + 
Sbjct: 74  DEQ-PAFPRGGNNVLTPLERKQIQIQATKDVLFEQKGKNGAEFANSDDEGSLGAAEDKKD 132

Query: 85  LHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEV 144
              K+KK+K KT +                 + K       +T K ++ G ++ G V+ +
Sbjct: 133 AGTKSKKRKAKTSKTKEAPA-----------AAKQGVKVESLTYKRLAVGSRILGQVSSI 181

Query: 145 NEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL------------------LPTI 186
              D+ + LP  L G     +A+   L  ++EA   +                   L   
Sbjct: 182 GLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKSEDEDDDDDDDDDDDLELKNY 240

Query: 187 FHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 243
             VGQ +   V      +DDKK   K+ I LS+       GL+   +     + A V S+
Sbjct: 241 VKVGQYLRAAVTATTRNEDDKKVKNKKHIELSIEPHAANSGLTKADMVVNATVQASVISV 300

Query: 244 EDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSS 298
           EDHG ++  GL      GF+    L   +GID   VK G +   +V   + +  V+ LS+
Sbjct: 301 EDHGLVMDLGLEENEAKGFISSRELP--AGIDISTVKEGSVFLCIVTGQNASGTVIKLSA 358

Query: 299 DPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 356
           D  + +            +I+  +PG      +  +   G++   +      VD+ H   
Sbjct: 359 DLSSAASVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKIMGMLDAVVDVIHSGA 418

Query: 357 TFPTTNWKNDYNQHKKVNARILFVDPTSRAV--GLTLNPYLLHNRAPPSHVKVGD----- 409
           +    +    Y+   K+  R++   P+S  V  G ++   +L      + V  GD     
Sbjct: 419 SDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFSPTATLVNGGDDDLPL 478

Query: 410 ---IYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE---EEVRKLEKKYKEGSCV 463
              I  + KV  VD  LGL + + ST      +V +S +A+   + +  +E  YK GS  
Sbjct: 479 ISDIIPEVKVTYVDTSLGLYVQLGST--KHQGFVHLSRLADGRVDSISSMEGPYKVGSTH 536

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQF 518
             RI+GF  ++ L    L+    E   F   DV  G VVKGK+    I  +   G IV  
Sbjct: 537 EGRIIGFSAMDNLFLVSLEPKIIEQPFFRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSL 596

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
              +  L P  HM++ ++  P KKF+ G ++  R+L V  + +++ +T KK+L+ S  A 
Sbjct: 597 TDNISGLVPEMHMADTKLQHPEKKFREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAP 656

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
              Y   +    + G + KI+ +G  V+FY  V+GF P SE+      +PS  + VGQVV
Sbjct: 657 WKDYESISAGSRSPGTLIKIQNNGAIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVV 716

Query: 637 KCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIA 691
               ++    + R+ +S    P+ V+ D     + V  G +VSG V   + + +++ +  
Sbjct: 717 NVHALTVDAENERLVVS-CKDPSTVTADYQSAFEKVHPGLVVSGTVFEKSSDDLLIKLQD 775

Query: 692 KGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-----LDNESSNLLLSAK 742
            G     + + H++D      T   + I+ G + D LLV        +S   LLS K
Sbjct: 776 SGLI-ARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKFAPYKEDSDRFLLSLK 831



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 210/928 (22%), Positives = 377/928 (40%), Gaps = 162/928 (17%)

Query: 610  QGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
            QGF   S L        SSM   Y VG   + RI   I  S   NL  +    ++ E   
Sbjct: 507  QGFVHLSRLADGRVDSISSMEGPYKVGSTHEGRI---IGFSAMDNLFLVSLEPKIIEQPF 563

Query: 667  VKL-----GSLVSGVVD--VVTPNAVVVYVIA-KGYSKGTIPTEHLAD-HLEHATVMKSV 717
             +L     GS+V G ++  ++ P  +   +++      G +P  H+AD  L+H    +  
Sbjct: 564  FRLEDVTVGSVVKGKIEKLLIKPEGINGLIVSLTDNISGLVPEMHMADTKLQHP---EKK 620

Query: 718  IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
             + G +   ++L +D +   L L+ K SL+NS      D   I   S   G +  I   G
Sbjct: 621  FREGLKVSVRILSVDPQKRQLRLTLKKSLLNSDSAPWKDYESISAGSRSPGTLIKIQNNG 680

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              V+F G + GF P S+  +    D S+ + VGQ V  + L V++E  R+ +S K     
Sbjct: 681  AIVQFYGAVKGFLPVSEMSEAYIKDPSQHFTVGQVVNVHALTVDAENERLVVSCKDPSTV 740

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            + D    Q  F   EK+                     G V+ G V E +   +++  ++
Sbjct: 741  TAD---YQSAF---EKVHP-------------------GLVVSGTVFEKSSDDLLIKLQD 775

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD-------------LSLKTVFI 943
               +    ++H   G++ +  S      +       LV              LSLK V  
Sbjct: 776  SGLIARLTSNHISDGSSAKRTSTFNRIRVGQKMDGLLVHKFAPYKEDSDRFLLSLKPVSK 835

Query: 944  DRFREANSNRQAQKK----------KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE- 992
             +  +++SN  ++KK            + +A +D+ V +   A +  VK+  L + L + 
Sbjct: 836  PK-EQSDSNPASEKKAPAVVLNNPIDEELKAMEDIVVGRITKAKITSVKDTQLNVVLADN 894

Query: 993  ----YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE 1048
                 + S  + S  D   +K P K F +   +   V+ +  +     L +         
Sbjct: 895  VQGRIDISEIFDSWEDIKDRKRPLKSFHSKDILPVRVLGIHDARNHKFLPI--------- 945

Query: 1049 TSSSKRAKKKSSYDVG---SLVQAEITEIKPLEL-RLKFG---IGF-------------- 1087
               S R+ K S Y++    S +QA  +E KPL L +LK G   IGF              
Sbjct: 946  ---SHRSGKVSVYELSTKRSCLQA--SEFKPLHLEQLKVGDRHIGFVNNIAEDCLWLNIS 1000

Query: 1088 ---HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII---AKSNKPDMKKSFLWELSIK 1141
                GR+ IT+++DD S +  N+  NF IG  +   +I   A+ N+ D+       +   
Sbjct: 1001 PNVRGRLRITDISDDIS-IRGNIQKNFPIGSALQVAVIGIDAEKNRLDLSA----RIGSS 1055

Query: 1142 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201
               LTV            D+S G  + G V K+ +   L+ I+ ++   + ++D A + +
Sbjct: 1056 AKTLTV-----------ADLSKGMILVGRVTKITDRQVLVQINDNVVGAISLIDMADDYT 1104

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD-GISDKTVD---ISNDNMQTFI 1257
            ++      FH  +A+   V+ ++   K +   +RP +    S   VD    S DN++   
Sbjct: 1105 KVNP--TNFHKNEALRVCVVDVDIPNKKISFSVRPSKVLSSSLPVVDPEITSIDNLKV-- 1160

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVL 1317
              G IV G I ++ +   G+ V +G  +   +  ++L +  + +    +   Q V+ ++ 
Sbjct: 1161 --GQIVRGFIRRVDN--IGVFVTLGHDVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLT 1216

Query: 1318 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1377
             + +       ++++L+ S+              +D   K    +++L    IV G V+ 
Sbjct: 1217 VVDKE---NNKIQMTLKKSV--------------LDPNYKPPFTLKELKVGQIVTGKVRK 1259

Query: 1378 VTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            V   G FI +  S  L      S +++  VE   + +    +V  +VL V+    ++ + 
Sbjct: 1260 VEEYGAFIAIDGSANLSGLCHRSEMAEKRVEDATQLYEKDDIVKAKVLKVDLEKGQIALG 1319

Query: 1436 LKTSDSRTASQSEIN-NLSNLHVGDIVI 1462
            LK S  R   + E + N S+   G I++
Sbjct: 1320 LKASYFRDLPEEESDANCSDDEAGGIML 1347



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 156/351 (44%), Gaps = 39/351 (11%)

Query: 208  GKRKIW-LSLRLSLL----YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP 262
            GK  ++ LS + S L    +K L LE ++ G     +V +I +    L+   P+  G L 
Sbjct: 950  GKVSVYELSTKRSCLQASEFKPLHLEQLKVGDRHIGFVNNIAEDCLWLNIS-PNVRGRLR 1008

Query: 263  RNNLAENSGI------DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI 316
              +++++  I      +   G  LQ  V  ID  +  + LS+   + +K +T       +
Sbjct: 1009 ITDISDDISIRGNIQKNFPIGSALQVAVIGIDAEKNRLDLSARIGSSAKTLT-------V 1061

Query: 317  DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
              L  GM++  RV  I +  V++       G + +  + + +   N  N +++++ +   
Sbjct: 1062 ADLSKGMILVGRVTKITDRQVLVQINDNVVGAISLIDMADDYTKVNPTN-FHKNEALRVC 1120

Query: 377  ILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLL 427
            ++ VD  ++ +  ++ P  + + + P          ++KVG I  +  + RVD  +G+ +
Sbjct: 1121 VVDVDIPNKKISFSVRPSKVLSSSLPVVDPEITSIDNLKVGQIV-RGFIRRVDN-IGVFV 1178

Query: 428  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
             +        AY+ +SD+++  +++ + +++    V+ R+             LK S  +
Sbjct: 1179 TLGH---DVTAYIRVSDLSDSFLKEWKDEFQVDQLVQGRLTVVDKENNKIQMTLKKSVLD 1235

Query: 488  GLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSE 533
                  FT  ++K G +V GKV  V+ +GA +   G   +  LC    M+E
Sbjct: 1236 PNYKPPFTLKELKVGQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAE 1286


>gi|171686100|ref|XP_001907991.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943011|emb|CAP68664.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1779

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 407/1537 (26%), Positives = 716/1537 (46%), Gaps = 213/1537 (13%)

Query: 473  LEGLATGILKASAFE----GLVFTHSDVKPGMVVK----GKVIAVDSF--GAIVQFPGGV 522
            L G A  IL +   E    G V  H DV   +V      G V  VD +  G+ ++     
Sbjct: 342  LPGTAADILVSEVTEHGLVGKVMGHLDVTADLVHSNAGPGAVDIVDEYKVGSRIK----A 397

Query: 523  KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE 582
            + +C  P           +K K+G  L+  VL +K K         + K+K  I S   +
Sbjct: 398  RIICNFPT---------ARKPKLGISLLPHVLSLKPK---------IAKTKNGIESLPVD 439

Query: 583  --ATDRLITHGWITKIEKH-GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQV 635
              A   +I    + ++E   G +V     GV GF   S +    +D   E S  Y VG V
Sbjct: 440  ILAHSTIIEKCTVQRVEPEIGLYVDVGVEGVPGFVHISRVKDGKVDSLFETSGPYKVGSV 499

Query: 636  VKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV-------- 687
               R++   P     NLS       V E   +++  +  GVV       +VV        
Sbjct: 500  HAARVVGYNPFDGMYNLSM---EKSVLEQPFLRIQDIPVGVVVPGVVEKLVVNEHGLGGL 556

Query: 688  -YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYS 744
               +A+G S G +P  HL+D HL+H    +   + G +    ++  N + + L L+ K +
Sbjct: 557  IVKVAEGIS-GLVPEMHLSDVHLQHP---EKKFREGMKVKTRVLSTNPARHQLRLTLKKT 612

Query: 745  LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
            L+NS          +       G +  +++ G  V+F G+L GF P S+  +    D  +
Sbjct: 613  LVNSDAPPVKSYDELAVGLQTFGTIVKLLDRGAIVQFYGQLRGFLPVSEMSEAYIQDPKE 672

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
             +  GQ++   +L  + E  R+ +S K               F LE+++A+         
Sbjct: 673  HFREGQTISVYVLSFDPEEKRMIVSCKDPSA-----------FGLEKQVAL--------- 712

Query: 865  ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------- 915
                 +   IG+++  KV +  +  + V   E S +   +    L   +V          
Sbjct: 713  -----KKLQIGNLVTAKVTQKTEDDIFVELVEGS-LKAILPVRHLTDKSVSKTQSALKKI 766

Query: 916  --SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
              + ++ +  +L+  +A R + LS K   ++    A   +      R R      G  + 
Sbjct: 767  HVNQTLTELVVLEKNEARRSIILSHKPSLVE---AAKKGKLLHTIDRARVGDVVPGFIRN 823

Query: 974  VNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS 1032
            + A    V+    L   LP+             + Q  P   F   QSV   + ++    
Sbjct: 824  ITATAAFVQFAGRLTALLPKTKLP--------RDIQDKPSFGFQKLQSVTVKITSV--DK 873

Query: 1033 TAGRLLLLLKAIS----ETETSSSKRAKKKSSYD----------VGSLVQAEITEIKPLE 1078
               R+++ + +      + + SS    K  ++ D          +G + +A +   K  +
Sbjct: 874  DLNRIVVAIPSEGGEDVQAKASSKSADKAMNALDLSVLTMEDLPIGKITKARVKSAKDTQ 933

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARII----AKSNK--PDM 1130
            + +       GRI +++V D   ++  V+     FK G  +  R++    A++++  P  
Sbjct: 934  INVDLADNIQGRIDVSQVFDKFEDIRSVKKPLGKFKTGDIIDVRVLGIHDARNHRFLPIS 993

Query: 1131 KKS--FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1188
             +S   + ELS KPS L        L + + +V  GQ    +V  V      + +S +++
Sbjct: 994  HRSSHTVLELSAKPSDLQEGSTPEPLSYAKLEV--GQTHLAFVNNVAQNHIWVNLSPNVR 1051

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
             ++  ++ + + S+LQ+  + F IG  +   V+ ++ E+  L L  R           D 
Sbjct: 1052 GRISAVELSDDLSKLQDVAKSFPIGSVLQVRVIHVDAERNRLDLSAR-----------DP 1100

Query: 1249 SNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN-ICVSDPLSG 1305
            + +N  T+  I +G ++ G+++K    V  + V++   + G V   +L +    ++PL  
Sbjct: 1101 NAENPLTWDKIQKGMVLPGKVTKTTDNV--VFVKLSESVAGPVFLCDLADDYEEANPLK- 1157

Query: 1306 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1365
            + + + V+  VL+I ++ +    + LS+R S           LS+ ++   K + K   +
Sbjct: 1158 HSKHEIVRVAVLDIDKSNK---RLRLSMRPS---------RVLSSRLEVTDKEITKDTKI 1205

Query: 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1425
            +   +++G+VKNV+ KG F+ L   + A V + NLSD Y++  ++ F I +LV GR++SV
Sbjct: 1206 AVGDVLRGFVKNVSDKGLFVTLGGDIVAMVQIKNLSDSYLKDWKEHFQIDQLVKGRIISV 1265

Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN-LVG 1484
               + R+E++L+ S         I   S+L  G IV G++++VE +G FI I+ ++ L G
Sbjct: 1266 S--NGRLEMSLRPSILSKDYVPPIT-FSDLKEGQIVTGKVRKVEDFGAFIDIDGSDRLSG 1322

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1544
            LCH SE+++  + + + +Y  G+KVK ++LKV+++ +RI+LG+K SYFK+D +    S E
Sbjct: 1323 LCHRSEMADRAIKDAKALYSEGDKVKARVLKVEEKTKRINLGLKPSYFKDDDEMDVDSDE 1382

Query: 1545 EESDEAIEEVGSYNRSSLLENSSVAVQDMDM-ESEDGGSLVL---AQIESRASVPPLEVN 1600
            +                    +++  +D DM ++  GG+LV+   +  E         V 
Sbjct: 1383 DA------------------GAALDSEDEDMSDAGAGGALVINADSDDEDDDDDADSNVE 1424

Query: 1601 LDDEQPD-----MDNGISQNQGHTDE----AKTIDEKNNRHAKKKEKEEREQEIRAAEER 1651
            +DD Q +        G S N    DE    A + DE   +  +++++E R Q  R AE  
Sbjct: 1425 MDDAQTEGVKGLETGGFSWNADALDEDDKAAGSTDEPIKKKKQQQQRESRAQVDRTAE-- 1482

Query: 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1711
             L+ + P+T  ++ERL+   P+SS +WI YMAF + ++D+  AR +AERA++TINI+EE 
Sbjct: 1483 -LDVNGPQTTSDYERLLLGQPDSSELWIAYMAFQMQVSDLASARQVAERAIKTINIKEEL 1541

Query: 1712 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1771
            EKLN+W+AY NLE  YG   EE V ++F+RA  Y D ++V+  L   Y ++ + K AD+L
Sbjct: 1542 EKLNVWIAYLNLEVAYGT--EETVEELFKRACTYNDEQEVYERLASSYIQSGKLKEADDL 1599

Query: 1772 LYKMIKKF-KHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHI--KFISQTAI 1826
              K+IKKF   S  VW+     L  +  + +  +A++ RA  SL   K +  + + + A 
Sbjct: 1600 FEKIIKKFGSKSPSVWINYAHFLHTKYDRPDKARALLPRAEKSLGGGKPVILELMPKFAA 1659

Query: 1827 LEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD--LIRGLFERAISL- 1881
            LEF+  NG  ++GRS+FE IL+ +PKR DLW+ ++D E  +G  D   +R LF+R   + 
Sbjct: 1660 LEFRSSNGDREQGRSLFETILAAFPKRFDLWNQFVDLETSVGTSDPATVRDLFDRGSKVK 1719

Query: 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
             L PK+ K  FK++ ++E   G+++  E V  KA E+
Sbjct: 1720 GLKPKQAKTWFKRWAQWEDKNGDKKSRERVSAKAQEW 1756



 Score =  248 bits (632), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 344/1367 (25%), Positives = 596/1367 (43%), Gaps = 143/1367 (10%)

Query: 52   PVFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGS 109
            P+FPRGG   LT  E+ +I   A+ D  FE          K KKKK  +     V+ +  
Sbjct: 63   PLFPRGGASVLTPLEQKQIQIQAKNDVLFEEAASKKSGGEKSKKKKARKSKGGEVEPVKD 122

Query: 110  LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP 169
               D I          +  K +  G  + G V  +N  D+ + LP  L G      A+  
Sbjct: 123  --EDAIK------VESLNFKRLVKGSLVLGTVCGINLTDVAVALPNNLVGHVPIT-AISD 173

Query: 170  ILDNEIEA-------------NEDNL-LPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWL 214
            I    ++A             +++N+ L TIF +GQ V   V+   DD  +   KR I L
Sbjct: 174  IFTQRLQAIAEKDEEEDQADEDDENIDLQTIFRMGQYVRAYVVSTHDDSVDGKPKRHIEL 233

Query: 215  SLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGI 272
            SL+ +L   G+S + + E   L A V S+EDHG+++   +      GFLPR  L  + GI
Sbjct: 234  SLQPALANSGMSEQDIVENTTLMASVVSVEDHGFVMDVNISDSKLKGFLPRKQL--DKGI 291

Query: 273  ---DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRV 329
                V+PG +L  +  S   + KVV LS+  D +    +   +  +ID  +PG      V
Sbjct: 292  PEESVQPGSVLLCIATSKAASGKVVQLSTLEDRIGSIKSFPSEATTIDSFLPGTAADILV 351

Query: 330  QSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--V 387
              + E+G++   + +   T D+ H        +  ++Y    ++ ARI+   PT+R   +
Sbjct: 352  SEVTEHGLVGKVMGHLDVTADLVHSNAGPGAVDIVDEYKVGSRIKARIICNFPTARKPKL 411

Query: 388  GLTLNPYLLHNRAPPSHVKVG------DIYDQSKVV------RVDRGLGLLLDIPSTPVS 435
            G++L P++L  +   +  K G      DI   S ++      RV+  +GL +D+    V 
Sbjct: 412  GISLLPHVLSLKPKIAKTKNGIESLPVDILAHSTIIEKCTVQRVEPEIGLYVDVGVEGV- 470

Query: 436  TPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 492
             P +V IS V + +V  L      YK GS    R++G+   +G+    ++ S  E     
Sbjct: 471  -PGFVHISRVKDGKVDSLFETSGPYKVGSVHAARVVGYNPFDGMYNLSMEKSVLEQPFLR 529

Query: 493  HSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
              D+  G+VV G V  + V+  G    IV+   G+  L P  H+S+  +  P KKF+ G 
Sbjct: 530  IQDIPVGVVVPGVVEKLVVNEHGLGGLIVKVAEGISGLVPEMHLSDVHLQHPEKKFREGM 589

Query: 548  ELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            ++  RVL     R  + +T KKTLV S    + SY E    L T G I K+   G  V+F
Sbjct: 590  KVKTRVLSTNPARHQLRLTLKKTLVNSDAPPVKSYDELAVGLQTFGTIVKLLDRGAIVQF 649

Query: 606  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
            Y  ++GF P SE+      +P   +  GQ +   ++S  P  +R+ +S    P+    + 
Sbjct: 650  YGQLRGFLPVSEMSEAYIQDPKEHFREGQTISVYVLSFDPEEKRMIVS-CKDPSAFGLEK 708

Query: 666  LVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
             V L     G+LV+  V   T + + V ++ +G  K  +P  HL D  +  +  +S +K 
Sbjct: 709  QVALKKLQIGNLVTAKVTQKTEDDIFVELV-EGSLKAILPVRHLTD--KSVSKTQSALKK 765

Query: 721  ---GYEFDQLLVLD-NES-SNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNII 773
                    +L+VL+ NE+  +++LS K SL+ +A+  +L           VV G++ NI 
Sbjct: 766  IHVNQTLTELVVLEKNEARRSIILSHKPSLVEAAKKGKLLHTIDRARVGDVVPGFIRNIT 825

Query: 774  ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             T  FV+F GRLT   P++K     +   S  +   QSV   I  V+ +  RI +++   
Sbjct: 826  ATAAFVQFAGRLTALLPKTKLPRDIQDKPSFGFQKLQSVTVKITSVDKDLNRIVVAIPSE 885

Query: 834  CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
                  A    +    ++ +  L  S      +  +E   IG + + +V  + D  + V 
Sbjct: 886  GGEDVQAKASSKS--ADKAMNALDLS------VLTMEDLPIGKITKARVKSAKDTQINVD 937

Query: 894  FEEHSDVYGFITHHQLAG------------ATVESGSVIQAAILDV--AKAERLVDLSLK 939
              ++  + G I   Q+                 ++G +I   +L +  A+  R + +S +
Sbjct: 938  LADN--IQGRIDVSQVFDKFEDIRSVKKPLGKFKTGDIIDVRVLGIHDARNHRFLPISHR 995

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIG 998
            +        A  +   +    +  +   L V QT  A V  V +N++ ++L P     I 
Sbjct: 996  SSHTVLELSAKPSDLQEGSTPEPLSYAKLEVGQTHLAFVNNVAQNHIWVNLSPNVRGRIS 1055

Query: 999  YASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKK 1057
               +S D +  +   K F  G   +  V  +   +   RL L  +  +     +  + +K
Sbjct: 1056 AVELSDDLSKLQDVAKSFPIGS--VLQVRVIHVDAERNRLDLSARDPNAENPLTWDKIQK 1113

Query: 1058 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 1117
                  G ++  ++T+     + +K      G + + ++ DD         S  +I + V
Sbjct: 1114 ------GMVLPGKVTKTTDNVVFVKLSESVAGPVFLCDLADDYEEANPLKHSKHEIVR-V 1166

Query: 1118 TARIIAKSNKPDMKKSFLWELSIKPSMLTVS--EIGSKLLFEECDVSIGQRVTGYVYKVD 1175
                I KSNK          LS++PS +  S  E+  K + ++  +++G  + G+V  V 
Sbjct: 1167 AVLDIDKSNK-------RLRLSMRPSRVLSSRLEVTDKEITKDTKIAVGDVLRGFVKNVS 1219

Query: 1176 NEWALLTISRHLKAQLFI--LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            ++   +T+   + A + I  L  +Y    L++++  F I + V G ++S++  +  L + 
Sbjct: 1220 DKGLFVTLGGDIVAMVQIKNLSDSY----LKDWKEHFQIDQLVKGRIISVSNGR--LEMS 1273

Query: 1234 LRPFQDGISDKTVDISNDNMQ--TF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
            LRP           +S D +   TF  + EG IV G++ K+      + +     L G  
Sbjct: 1274 LRPSI---------LSKDYVPPITFSDLKEGQIVTGKVRKVEDFGAFIDIDGSDRLSGLC 1324

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            H +E+ +  + D  + Y EG  VK +VL++      T  + L L+ S
Sbjct: 1325 HRSEMADRAIKDAKALYSEGDKVKARVLKVEEK---TKRINLGLKPS 1368


>gi|148710080|gb|EDL42026.1| programmed cell death protein 11 [Mus musculus]
          Length = 1643

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 381/1432 (26%), Positives = 634/1432 (44%), Gaps = 209/1432 (14%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+            +V  E   ++R   +K   K KK + +  +++  
Sbjct: 8    FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 68   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 116  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++ GM+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 174  RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 294  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 349  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 406  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 466  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL++++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 526  VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL---------VKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF ++  +R  +  +         V++G LV   V  
Sbjct: 586  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH                          ++  LL
Sbjct: 646  KTKTGLEVAILPHN-TPAFLPTPHLSDH-------------------------AANGPLL 679

Query: 740  SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
                  +   Q  P   S I P  ++ G+V  I E G FV+F   L+G +P++   D   
Sbjct: 680  HHWLQTVEGGQD-PKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFV 738

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAML 856
               S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   + 
Sbjct: 739  TTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIR 798

Query: 857  Q-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATV 914
               S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG  V
Sbjct: 799  SLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEV 858

Query: 915  ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            E G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ  
Sbjct: 859  EPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ-- 901

Query: 975  NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSST 1033
              IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+       T
Sbjct: 902  -GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVT 960

Query: 1034 AGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
            A                                                   GF G IH 
Sbjct: 961  AD--------------------------------------------------GFVGCIHA 970

Query: 1094 TEVNDDKSNVVENLFSNFKIGQTVTARIIA----KSNK--PDMKKSF---LWELSIKPSM 1144
            + + DD   V  +  +  K G+ VTAR+I     K+ K  P     F   + ELS++PS 
Sbjct: 971  SRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKTYKFLPISHPRFVLTILELSVRPSE 1029

Query: 1145 LTVSEIGSKLLFEECDVSI-----GQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSA 1197
            L  S        E     I     GQ VT +   Y V  +W  + I   ++ ++ +L ++
Sbjct: 1030 LKGSYSALNTHSESPVEKIRQYQAGQTVTCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTS 1089

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPFQDGISDKTVDISNDNMQTF 1256
                 L+   ++F +G+A+   V+  +  +  L L ++ P++                  
Sbjct: 1090 LSFKVLKHPDKKFQVGQAIEATVVDPDVPRAFLCLSLIGPYR------------------ 1131

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            + EG++  GR+ K++    GL V       G+V    L +     PL  +   + V+C +
Sbjct: 1132 LEEGEVAMGRVMKVVPN-RGLTVSFPFGKIGKVSMFHLSDSYSEAPLEDFCPQKIVRCYI 1190

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L  +  V     + LSLRSS     + N       ++ P   +  IED+    +++GYVK
Sbjct: 1191 LSTAHRV-----LALSLRSSRTNRETKNR------IEDP--EINSIEDVKEGQLLRGYVK 1237

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             V      I L   +      S++S+     PEKE   G L  G++++ + L
Sbjct: 1238 CVLPSSVIIGLGPSVLGLAKYSHVSECV--PPEKELYNGCLPEGKLVTAKEL 1287



 Score =  276 bits (706), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 135/280 (48%), Positives = 194/280 (69%), Gaps = 3/280 (1%)

Query: 1643 QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1702
            +E   +E+    +  P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL
Sbjct: 1359 EESSDSEDEQPHQAKPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERAL 1418

Query: 1703 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1762
            +TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++
Sbjct: 1419 KTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKS 1476

Query: 1763 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFI 1821
            E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +H+  I
Sbjct: 1477 EKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVI 1536

Query: 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881
             + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I L
Sbjct: 1537 VKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIHL 1596

Query: 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            SL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1597 SLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1636



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 138/321 (42%), Gaps = 40/321 (12%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y RV H ++ K    ++    +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARVSHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR S+              +  P     +  D+    +V+G V  +   G  + +
Sbjct: 433  ---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLAIKPFGILVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK +   T+  S
Sbjct: 473  GEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKT-LVTSKLS 531

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
             I        G    G I RV+ YG  +   N ++ GL    ELS  H+ + ET++  G+
Sbjct: 532  LITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIPDPETVFYTGQ 590

Query: 1508 KVKVKILKVDKEKRRISLGMK 1528
             VKV +L  +  K R+ L  +
Sbjct: 591  VVKVAVLSCEPSKERMLLSFR 611



 Score = 43.9 bits (102), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 46/85 (54%)

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
            G+  + + ++ P M++ G+VK +   G F+     L      + +SD +V +P + F  G
Sbjct: 689  GQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEG 748

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSD 1440
            + V  +V +V+   +R+ ++L+ SD
Sbjct: 749  QTVVAKVTNVDESKQRMLLSLRLSD 773


>gi|390604643|gb|EIN14034.1| U3 snoRNP-associated protein Rrp5 [Punctularia strigosozonata
            HHB-11173 SS5]
          Length = 1502

 Score =  370 bits (951), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 344/1237 (27%), Positives = 609/1237 (49%), Gaps = 163/1237 (13%)

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            S+ S I P ++V   +  ++ +G  ++ LG   G         G   D   TY  G  ++
Sbjct: 350  SNVSSILPGAMVQCLITAVVPSGLNLQVLGYFEGTVDLFHLPYGTPGD---TYKNGSKIK 406

Query: 814  SNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFL---LEEKIAMLQSSKHNGSELKW 868
            + IL   S T   R  LSL              EH L   ++ + A +  S    S L+ 
Sbjct: 407  ARILYDLSATSPRRFALSLA-------------EHILTLSMKGRAAAVDGSSKPLSLLQ- 452

Query: 869  VEGFIIGSVIEGK--VHESNDFGVVVSFEEHSDVYGFITH---HQLAGATVESG-----S 918
             + F +G+ +E    +    + G+V+   + ++ Y  I+      +A  +  SG     +
Sbjct: 453  -DDFPVGTTLEAAKVIRVEPERGLVLEVSDDTNGYVHISQVSDDHVAALSSSSGPWRVST 511

Query: 919  VIQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
            + +A +      + L+ LSL+ +V   RF +                 +D  V + +   
Sbjct: 512  IHRARVTGYHALDGLLQLSLRPSVLEKRFIQV----------------RDAEVGEVIKGT 555

Query: 978  VEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
            V+ + ++ L + +      + + +     T K PQK+F  G S+   V+A+       R 
Sbjct: 556  VKKLTDSALFVEISGNVDGVVWPNHYADITLKHPQKRFKPGGSIKCRVLAV----NPERN 611

Query: 1038 LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN 1097
             + L A      S     K+     VG +  A I  +    L+++F       +   E +
Sbjct: 612  RISLTAKKTLVESPLPIVKQVEDAIVGLVTHAVIFRVSDKGLQVEFFNNLKAFVPRKEAS 671

Query: 1098 DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSM--LTVS---EIGS 1152
            D    +  +L +   +G+ V  RI                LS+ P+   +T S    + +
Sbjct: 672  D---IMGVDLSATIPVGKPVKVRI----------------LSVDPATGRITASIRQAVDA 712

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
            +      DV++G  V+G V ++  +  LL++       L  L++      +   Q R  +
Sbjct: 713  QSASPVADVNVGDVVSGSVAELHKDNVLLSLKPSQAKGLLSLNNLANYRGISASQLRASL 772

Query: 1213 GKAVTGHVL------SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
               VTG +L      S N  K ++ +  +P       +   +S D ++     G +VGGR
Sbjct: 773  ---VTGEMLNNLVVVSRNANKGIVIVATKPVVRAPMTQGSALSMDTVEV----GSVVGGR 825

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ-------FVKCKVLEI 1319
            +  +     G ++++   + G +H T+    C  +    ++EG         +K  V+E+
Sbjct: 826  V--LRHTRKGALIKLNARITGLLHPTD----CTDN----FEEGNAFPAVDSILKAVVVEV 875

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
             ++      + LS+R S    +S N+      V+ P   +  I DL     ++G++K+V+
Sbjct: 876  DKSRN---QLVLSMRRSRMDPTSNNT------VEDP--EVLAIADLQAGQTIRGFIKSVS 924

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
              G ++ML R +DA+V +  L D YV+  +  F   ++V GR+LSV+   K+VE++ ++ 
Sbjct: 925  EHGLYVMLGRNIDARVQIRELFDEYVKDWKSRFSPNQIVKGRILSVDQDKKQVEMSFRSV 984

Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
             S + S++++  LS+L  G  + G++K+VE YG+FI +E + L GLCH +++S++   ++
Sbjct: 985  SSSSGSKTKLL-LSDLTEGQKIEGKVKKVEDYGIFIELEGSKLSGLCHKTQISDNPDADV 1043

Query: 1500 ETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYF------KNDADNLQMSS------- 1543
                  +R G+KVK  +L VD EKRRISLG+K SYF        D    + SS       
Sbjct: 1044 NLALRSFREGDKVKAMVLSVDHEKRRISLGLKPSYFTEADFESGDESGSETSSHIGILSE 1103

Query: 1544 ---EEES---DEAIEEVGSYNRSSLLENSSVAVQDM--DMESEDGGSLVLAQIES--RAS 1593
               +EE+   +E + +V S + ++  EN S A   M  D+E+   G+    Q  S  +++
Sbjct: 1104 GHIDEEAVSPEEDMNDVASSHFNNDAENDSDADHTMQVDVEALTTGANDARQDYSTEQST 1163

Query: 1594 VPPLEVNLDDE---QPDMDNGISQNQGHTDEAKTIDEKNNRHA---KKKEKEEREQEIRA 1647
              P ++ L  E   Q    +  + ++    E+ + DE N+  A   K+K +++ EQ++ A
Sbjct: 1164 SAPKDLILKLEGGFQWSAKDSATHDEESGSES-SADEDNDESATQRKRKRRKQIEQDLTA 1222

Query: 1648 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1707
                 L    P +  +FER++ SSP+SS++WI+YM+F+L M++V++AR I  RAL+TIN 
Sbjct: 1223 D----LHNKMPESTADFERVLLSSPDSSYLWIQYMSFLLQMSEVDRAREIGRRALRTINF 1278

Query: 1708 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1767
            REE EKLN+W+A  NLEN YG   +E++  VF+ A +  D K +HL L  +++++ ++++
Sbjct: 1279 REEQEKLNVWIALLNLENVYGT--DESLESVFKEAARSNDSKTIHLRLASIFDQSGKHEM 1336

Query: 1768 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1826
            A+E   +  KKF HS KVW    +  LK+ + E  + ++ R+L SL + KH+K IS+ A 
Sbjct: 1337 AEEQYKRTAKKFGHSSKVWTLYGEHYLKRGEHEQARKLLPRSLQSLEKRKHLKTISKFAQ 1396

Query: 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886
            LE+K G A+RGR++FEGI+  + KR D+W+IY+D E    ++  +R LF+R ++  +   
Sbjct: 1397 LEYKYGDAERGRTIFEGIVDSHSKRWDIWAIYMDMEAGQSNIQGLRNLFDRVLTQKMTSH 1456

Query: 1887 KMK---FLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            K K     FKK+LE E+S+G+E+  E VK KA+E+ +
Sbjct: 1457 KAKRVPSFFKKWLELERSIGDEDGAEIVKAKAIEWTQ 1493



 Score =  246 bits (629), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 254/944 (26%), Positives = 425/944 (45%), Gaps = 105/944 (11%)

Query: 8   SQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDL--ALPPDDDVPVFPRGGGHSLTQR 65
           ++K+      + NK  + +   S K+   A E  D    L   +DV  FPRGGG +LT  
Sbjct: 4   TKKRQLDAASQSNKPKRAKLDESHKKAERATEKSDQPSTLLVQEDVD-FPRGGGTNLTPM 62

Query: 66  ERDEIHAEVDAEFEAV---ERGLHK--KNKKKKKKTERKANETVDDLGSLFGDGISGKLP 120
           E   I AE   E + V   E    K  K +K   K++ K  E          D I  +  
Sbjct: 63  EVKTIRAEAAKEADEVLFKEAATRKSLKGRKSTIKSKAKGGEATKP------DTIRVEHL 116

Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPI 170
            Y     L  I+ GMK+ G +  V    L++ LP  L G          L  A +A+D  
Sbjct: 117 NYKASHCLTRITTGMKILGQIVAVQPLALIVSLPNQLMGHIPITQISSQLTSALEAMDEG 176

Query: 171 LDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQL----DDDKKEIG---- 208
            + E +A E +               L  IFHVGQ V C+V  +      D   +G    
Sbjct: 177 DETESDAMESDSRASPSRPHKPRIPELFDIFHVGQFVRCVVTAIHTPGTTDNTGLGLKGR 236

Query: 209 ------KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP 262
                  R++ LS+   L+  G+    ++ G  L+A +KS+EDHGY+L  G+        
Sbjct: 237 GDLEKASRRVELSVAPHLVNAGVVKADLKPGFTLSAAIKSVEDHGYVLDLGMGDGISAFL 296

Query: 263 RNNLAENSGIDVKPGLLLQGVVR----SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDL 318
               A+ +  + + GL +  VV     S+ ++ +   +S DP+  +     ++  +S   
Sbjct: 297 SFEAAKQAPWNTEAGLCVGQVVDVNIVSLAKSGRTCTVSVDPEVFTSVSLSEVSNVSS-- 354

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
           ++PG MV   + +++ +G+ L  L YF GTVD+FHL    P   +KN      K+ ARIL
Sbjct: 355 ILPGAMVQCLITAVVPSGLNLQVLGYFEGTVDLFHLPYGTPGDTYKNG----SKIKARIL 410

Query: 379 F-VDPTS-RAVGLTLNPYLL----HNRA--------PPSHVK----VGDIYDQSKVVRVD 420
           + +  TS R   L+L  ++L      RA        P S ++    VG   + +KV+RV+
Sbjct: 411 YDLSATSPRRFALSLAEHILTLSMKGRAAAVDGSSKPLSLLQDDFPVGTTLEAAKVIRVE 470

Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLA 477
              GL+L++      T  YV IS V+++ V  L      ++  +  R R+ G+  L+GL 
Sbjct: 471 PERGLVLEVSD---DTNGYVHISQVSDDHVAALSSSSGPWRVSTIHRARVTGYHALDGLL 527

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 537
              L+ S  E       D + G V+KG V  +      V+  G V  +    H ++  + 
Sbjct: 528 QLSLRPSVLEKRFIQVRDAEVGEVIKGTVKKLTDSALFVEISGNVDGVVWPNHYADITLK 587

Query: 538 KPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
            P K+FK G  +  RVL V  +R  I++T KKTLV+S L I+    +A   L+TH  I +
Sbjct: 588 HPQKRFKPGGSIKCRVLAVNPERNRISLTAKKTLVESPLPIVKQVEDAIVGLVTHAVIFR 647

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           +   G  V F+N ++ F PR E     G + S+   VG+ VK RI+S  PA+ RI  S  
Sbjct: 648 VSDKGLQVEFFNNLKAFVPRKEASDIMGVDLSATIPVGKPVKVRILSVDPATGRITASIR 707

Query: 656 MKPTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE-HAT 712
                 S   +  V +G +VSG V  +  + V++  +    +KG +   +LA++    A+
Sbjct: 708 QAVDAQSASPVADVNVGDVVSGSVAELHKDNVLLS-LKPSQAKGLLSLNNLANYRGISAS 766

Query: 713 VMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYV 769
            +++ +  G   + L+V+  N +  +++ A   ++ +     S  S   +   SVV G V
Sbjct: 767 QLRASLVTGEMLNNLVVVSRNANKGIVIVATKPVVRAPMTQGSALSMDTVEVGSVVGGRV 826

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
                 G  ++   R+TG    +   D    + +    V   +++ +++V+    ++ LS
Sbjct: 827 LRHTRKGALIKLNARITGLLHPTDCTDNFE-EGNAFPAVDSILKAVVVEVDKSRNQLVLS 885

Query: 830 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 873
           +++S    T  + +++  +L   IA LQ+ +        + GFI
Sbjct: 886 MRRSRMDPTSNNTVEDPEVL--AIADLQAGQT-------IRGFI 920


>gi|365991395|ref|XP_003672526.1| hypothetical protein NDAI_0K00920 [Naumovozyma dairenensis CBS 421]
 gi|343771302|emb|CCD27283.1| hypothetical protein NDAI_0K00920 [Naumovozyma dairenensis CBS 421]
          Length = 1718

 Score =  369 bits (946), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 338/1198 (28%), Positives = 573/1198 (47%), Gaps = 161/1198 (13%)

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            GC V F G LT F P ++  +       +   +GQ+V   IL ++ E  R+ ++    C 
Sbjct: 623  GCIVSFFGGLTAFLPNAEISEVFVKRPEEHLRLGQTVIVKILKMDEEQSRMLVT----CK 678

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVIEGKVHESNDFGVVVSF 894
             S D +  ++                     + +E  I G S+++  V E     ++V  
Sbjct: 679  ISNDQAEQKK---------------------ERIEKLIPGRSIVDVTVLEKTKESLIVEL 717

Query: 895  EEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFID 944
            ++  D+ G +    L+ A +E           GS +   ++D     ++ +L+LK   + 
Sbjct: 718  QD-VDLRGVLYVGHLSDARIEQNRAAFKKIVVGSKLTGLVIDKDTRTQIFNLTLKKSLLK 776

Query: 945  RFREANSNRQAQKKKRKREASKDLGVHQTVN--AIVEIVKENYLVLSLPEYNHSIGYASV 1002
               + +S       K K + +   G  ++++   I       ++ L LP Y        +
Sbjct: 777  DAEKESSPLSYADLKSKDKTTPLHGYVKSISNKGIFVAFNGKFVGLVLPSYAVESRDIDI 836

Query: 1003 SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS----------ETETSSS 1052
            S         K F   QSV A +  L +     R LL LK  +          ET     
Sbjct: 837  S---------KVFYINQSVTAYL--LRTDDDNQRFLLTLKEPTNKVTITTNSLETINPVD 885

Query: 1053 KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSN 1110
               K    +  G+LV+A+I  IK  +L +      HGRI + EV D+ S +   +   S 
Sbjct: 886  PSMKSLKDFTPGTLVKAQIKGIKKNQLNVILADNLHGRIDVAEVYDNLSEIKDTKQPLSG 945

Query: 1111 FKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDV 1161
            FK G  V A+II   +    K         K    ELS+K S+L    +  K +    DV
Sbjct: 946  FKKGDIVKAKIIGTHDMKSHKFLPISHHAIKGTALELSLKTSVLGNPVVNMKSI---SDV 1002

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
            S+G  + GYV    +++  LTIS  LKA++ I D A +  +  + +  F +G A+   V 
Sbjct: 1003 SVGDELIGYVNNYTSKFLWLTISPILKAKISIFDLAKDGLKGSDIESNFPLGCALPVTVT 1062

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
            SI+ E  ++ +       G S   + I++      I  GD +  RI+K+      L++ +
Sbjct: 1063 SIDTEHGIINV------KGKSHTVISIAD------IKVGDRLPARITKVTERY--LLLDL 1108

Query: 1282 GPHLYGRVHFTE-LKNICVSDPLS-GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
            G  +      T+ L+N  +S   S    E + V  KVL +    +    + +SL+S    
Sbjct: 1109 GNGVSALSFATDALENFSLSLVASFKGKENKLVFVKVLSVDVESK---KIHVSLKSDSAK 1165

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
             SS  S D                D+    IV   VKNV+ KG F+ LS  + A V +S 
Sbjct: 1166 SSSIKSHD----------------DIKQGDIVDALVKNVSDKGIFVYLSGSIQAFVPVSK 1209

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1459
            LSD Y++  +K +   + V G+V+  +    R+ +TL+ S+      + +   S++ V D
Sbjct: 1210 LSDSYLKEWKKFYKPMQHVIGKVVKSDE-DDRILLTLRESEV-NGDLNILKGYSDIKVND 1267

Query: 1460 IVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
            +  G +K V  +G+F+ ++NT N+ GL H++E+++    ++ +++  G++VK  +LKV+ 
Sbjct: 1268 VFDGTVKNVTDFGVFVKLDNTVNVTGLAHITEIADTQPKDLSSLFGTGDRVKAFVLKVNP 1327

Query: 1519 EKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1578
             K+++SL +K+S F  D+   + +++E+ DE ++ V  YN  S            D+ES+
Sbjct: 1328 TKKQLSLSLKASRFSKDSATKKDTAKEDMDEPVD-VIDYNNES------------DVESD 1374

Query: 1579 DGGSLVLAQIESRASVPP-LEVNLDDEQPDMDNGISQNQGHTDEAK------------TI 1625
                     ++ R  V     V+ DD    +  G        D+A+            T+
Sbjct: 1375 ---------VDERPVVTKKTTVSTDDLS--LSTGFDWTASILDQAQDEESEEDEDEDFTV 1423

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM 1685
             +K+    KK+  E++  +I           AP +  +FERL+  +PNSS +W+ YMAF 
Sbjct: 1424 SKKHKHSKKKQIVEDKTIDISTR--------APESVADFERLIIGNPNSSVIWMNYMAFQ 1475

Query: 1686 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1745
            L ++++EKAR +AERAL+TIN REE EK NIW+A  NLEN +G   EE +  VF+R+ QY
Sbjct: 1476 LQLSEIEKARELAERALKTINFREEAEKQNIWIALLNLENTFGT--EETLEDVFKRSCQY 1533

Query: 1746 CDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQA 1803
             D   +H  LL +Y+ +E++  A EL     KKF      +W+     L+ Q Q +  ++
Sbjct: 1534 MDSFTMHNKLLSIYQMSEKSDKASELYKVTAKKFGSEKVSIWVSWGDFLISQGQTQEARS 1593

Query: 1804 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863
            ++  +L +LP+  HI+ + + A LEF  G  + GRS+ EG++++ PKR D+W++Y+DQEI
Sbjct: 1594 ILANSLKALPKRSHIEVVRKFAQLEFAKGDPEGGRSLLEGLIADAPKRIDIWNVYIDQEI 1653

Query: 1864 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            ++ +   +  LFER ++  +  K+ KF F K+L++E+S  +++ +EYVK KA EYV S
Sbjct: 1654 KIKEKKKVEELFERVLTKKVTRKQAKFFFNKWLQFEESQKDDKAVEYVKAKATEYVNS 1711



 Score =  144 bits (364), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 173/696 (24%), Positives = 310/696 (44%), Gaps = 77/696 (11%)

Query: 183 LPTI---FHVGQLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
           LP++   F +GQ + C V+    L+   K+   ++I L++  S +      + +     +
Sbjct: 202 LPSLERYFKIGQWLRCCVITNSALEPKMKKKNSKRIELTIEPSRV-NPFQEDDLLRSTAV 260

Query: 237 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKV-V 294
              VKSIEDHG  L  G+ + TGF+ + +  +   +   PG + L  V +  DR+ +V +
Sbjct: 261 QCSVKSIEDHGATLDLGIENMTGFISKKDCPDFETL--LPGSVFLGNVFKKSDRSVQVNM 318

Query: 295 YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
             ++  + +++         S+D +VPG  V    Q I   G+         G +   HL
Sbjct: 319 DFTNKKNKITQIS-------SVDAVVPGQSVDLLCQQITPRGINGKAFGLVPGFIGNAHL 371

Query: 355 QNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVGLTLNPYLLH--NRAPP----SHV 405
           +  F   + K+ +     + ARI+ V       + + L++ P++L+  N+       S  
Sbjct: 372 R-VFKEEDLKHKFALGSNIQARIIAVLTNKENDKTLILSILPHILNLENKLKATESLSAF 430

Query: 406 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS-CVR 464
            +G  +D   V   D              S   Y+ + D    +V       +EG+  + 
Sbjct: 431 PIGYKFDSCDVKGRD--------------SDYLYLALDDDRIGQVHSSRVGEQEGTDKLP 476

Query: 465 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGV 522
            R+LGF  ++ +   +      +       D+  G ++ G ++  V S G  ++ F G  
Sbjct: 477 ARVLGFNSVDDVYELVTAPETLKLKYLRTKDIPVGELLTGCEIETVSSKGMKLKIFNGQF 536

Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK----SKLAIL 577
            A  P  H+S+  +V P +KFK+G+++  RVL V  K R+ VT KKTLV     S +  +
Sbjct: 537 TATVPSLHISDTRLVYPERKFKIGSKVKARVLNVDEKGRVYVTLKKTLVNIEDDSDIQFI 596

Query: 578 SSYAEA-TDRLITHGWITKIEK---HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
           S+YA+A T +  +   +  +E    +GC V F+ G+  F P +E+       P     +G
Sbjct: 597 STYAQAKTIQEKSEKTVATVESFRPNGCIVSFFGGLTAFLPNAEISEVFVKRPEEHLRLG 656

Query: 634 QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSG--VVDVV----TPN 683
           Q V  +I+       R     M+   ++S D       ++  L+ G  +VDV     T  
Sbjct: 657 QTVIVKILKMDEEQSR-----MLVTCKISNDQAEQKKERIEKLIPGRSIVDVTVLEKTKE 711

Query: 684 AVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSA 741
           +++V +      +G +   HL+D  +E        I  G +   L++  +  + +  L+ 
Sbjct: 712 SLIVELQDVDL-RGVLYVGHLSDARIEQNRAAFKKIVVGSKLTGLVIDKDTRTQIFNLTL 770

Query: 742 KYSLINSAQQLPSDASHIHPNS-----VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
           K SL+  A++  S  S+    S      +HGYV +I   G FV F G+  G    S AV+
Sbjct: 771 KKSLLKDAEKESSPLSYADLKSKDKTTPLHGYVKSISNKGIFVAFNGKFVGLVLPSYAVE 830

Query: 797 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            +  D+SK +Y+ QSV + +L  + +  R  L+LK+
Sbjct: 831 SRDIDISKVFYINQSVTAYLLRTDDDNQRFLLTLKE 866


>gi|374109344|gb|AEY98250.1| FAFR566Cp [Ashbya gossypii FDAG1]
          Length = 1715

 Score =  368 bits (944), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 361/1339 (26%), Positives = 628/1339 (46%), Gaps = 184/1339 (13%)

Query: 654  FMMKPTRVSEDDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HL 708
             + KP   S D  + +G+++SG  +  V+ N + + +   G  K  +   H++D    + 
Sbjct: 478  LLAKPYLRSAD--IPVGTILSGCEITAVSGNGIELSLF-DGQFKAFVAPLHISDIRLVYP 534

Query: 709  EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ---LPSDASHIHPNSVV 765
            E    + S +K      ++L +DN+   + ++ K SL+++      L SD   I   +  
Sbjct: 535  ERKFKIGSKVK-----GRVLHVDNKG-RVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEE 588

Query: 766  HGYVCNIIET----GCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYVGQSVRSNILDV 819
             G     +E+    GC V FLG L  F P  +  +   QRA       +GQ+V   +L+ 
Sbjct: 589  DGKTLATVESFKPSGCVVTFLGNLKAFLPNKEISEAFVQRA--QDHLRLGQTVVVKVLEH 646

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVI 878
             ++  ++ ++ K    SS D+         ++K A              +   ++G S++
Sbjct: 647  VAKQSKVIVTRK---VSSEDSE--------KQKAA--------------INDLVVGRSIV 681

Query: 879  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVA 928
            +  V E     VVV   +   + G I    L+ + +E           GS +Q  ++D  
Sbjct: 682  DVTVVEKTKDSVVVELNDVG-LRGVIYVGHLSDSKLEQNRALLKKLRIGSSLQGVVMDKD 740

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKE 983
               R+ ++S K   I   ++A+ +         ++   +  +H  V +I +         
Sbjct: 741  VKTRVFNMSCKKSLI---KDASKDILPLTFVDIKDKDPNTPMHGYVKSISDRGIFVAFTG 797

Query: 984  NYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 1043
             ++ L LP Y       +    +   F  K+F   QSV  TV  L +     R LL    
Sbjct: 798  KFVGLVLPSY-------ATESRDVDIF--KKFYLNQSV--TVYLLRTDEENERFLL---T 843

Query: 1044 ISETETSSSKR---------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 1088
            +S  +TS+ K                 K  S Y VG++ +A +  +K  +L +      H
Sbjct: 844  MSPPQTSNKKEDSNHDVAAVNPVDASVKIISQYSVGTITKARVKSVKKTQLNVVLADNLH 903

Query: 1089 GRIHITEVNDDKSNVVENL---FSNFKIGQTVTARII----AKSNK--PDMKKS---FLW 1136
            GR+  +E+ D    + EN     + FK G  +  ++I    +K++K  P   ++    + 
Sbjct: 904  GRVDASEIYDTFEEI-ENPKEPLAKFKSGDVIDVKVIGFHDSKTHKFLPISHRTGVNTVL 962

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
            ELS K S L     G+    E   +  G  + G+V      +  LT+S  LKA++   + 
Sbjct: 963  ELSAKKSALK----GAYQPIEFSGMKNGDELIGFVNNFAKGFIWLTLSPALKAKIPDFEL 1018

Query: 1197 AYEPSELQ-EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            + + S         F +G A+   V  ++   K++ +  R           DI +     
Sbjct: 1019 SDDGSVFTGNLDESFPLGCALKVKVKELDPAHKIVSVSARKHA------ITDIKD----- 1067

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE--GQFVK 1313
             I   D +  RI K+      L++ +G  L G    T+  N       S Y++  G  + 
Sbjct: 1068 -IKVADKLPARIVKVADSY--LLLDLGNRLTGVAFVTDALNEFSLSLRSVYEDKIGSMIL 1124

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
              V+ +    +    + LSLR+                 D   +++   +DL    +V+G
Sbjct: 1125 ASVVGVDVENK---KINLSLRTE----------------DATDRYISSHKDLKQGDVVRG 1165

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
            ++K+VT KG F+ LSR L A V +S L+D Y++  +K +   + + G+V++ E  S R+ 
Sbjct: 1166 FIKSVTDKGIFVYLSRTLQAFVPVSKLTDAYIKEWKKFYKTMQPITGKVVNCESDS-RIL 1224

Query: 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELS 1492
            +T+K S+        + + ++L  GDI  G +K V  +G+F+ + NT N+ GL H SE+S
Sbjct: 1225 LTMKESEV-NGELKILKSYADLKSGDIFDGSVKNVTDFGVFVKLHNTLNVTGLAHKSEIS 1283

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1552
            +  +D++  ++  G+KVK  ILK + EK ++SLG+K+SYF+   D+     E E  E+IE
Sbjct: 1284 DSKIDDLSLLFGEGDKVKAIILKTNPEKNQVSLGLKASYFQKAHDD---EDEAEPAESIE 1340

Query: 1553 EVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGI 1612
            E      +    +   A++D++ E             + A  P  E +    +  +  G+
Sbjct: 1341 EANGEEINGEASDEDEAMEDIEYE------------HTPADAPSHETSSKAHKEAVPTGL 1388

Query: 1613 SQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIR--------AAEERLLEKD--APRTPD 1662
            S + G    A  +D+    + +  E E+   +          A  +R ++ +  AP +  
Sbjct: 1389 SLSAGFDWTASILDQNREDNEESSEDEDFTSKKAKKNKKRHAAVIDRTVDINTKAPESVG 1448

Query: 1663 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1722
            +FERL+  +PNSS +W+ YMAF L +++VEKAR +AERAL+TI+ REE+EKLNIW+A  N
Sbjct: 1449 DFERLIMGNPNSSVIWMNYMAFQLQLSEVEKARELAERALKTISFREEHEKLNIWIAMLN 1508

Query: 1723 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KH 1781
            LEN +G   +E +  VF+RA QY D   +H+ L+ +Y  + ++  A EL     KKF   
Sbjct: 1509 LENTFGT--DETLEDVFRRACQYMDAYTIHMKLISIYAMSSKDDKAVELYKAAAKKFGSE 1566

Query: 1782 SCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
            +  +W+   + LL  +Q +  +AV+ +AL SLPR  HI  + + A LEF  G  ++GR++
Sbjct: 1567 NVSLWVSWGEFLLTHEQPDEARAVLAQALKSLPRRSHIDVVRKFAQLEFAKGDPEQGRAL 1626

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900
            FEG+L++ PKR D+W++YLDQEI+  +      LFER +   L  K+ KF F K+L+  +
Sbjct: 1627 FEGLLADAPKRIDIWNVYLDQEIKSSNRARADALFERVLVAKLSRKQAKFFFNKWLQLAE 1686

Query: 1901 SVGEEERIEYVKQKAMEYV 1919
            S  ++  +EY+K +A +YV
Sbjct: 1687 STDDQRGVEYIKARAADYV 1705



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 304/1360 (22%), Positives = 567/1360 (41%), Gaps = 187/1360 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
            FPRGG  +LT  E  ++  E   D  F           +   K  E +  +      +  
Sbjct: 39   FPRGGASALTPLELKQVANEAASDVLF----------GRDDGKPAEERPRKKKKTSKASK 88

Query: 112  GDGISGKLPR--YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP 169
             D ++GK  R      ++ K +++G  L G +  VN  DL I L  GLRG     +   P
Sbjct: 89   EDAVAGKEDRTDIVEHLSFKGLTSGTVLLGQLCGVNRTDLCIALTDGLRGYVPLTNISAP 148

Query: 170  I------LDNEIEANEDNL-----------------LPTI---FHVGQLVSCIVLQ---L 200
                   LD  +++  ++                  LP +   F +GQ + C+V++   L
Sbjct: 149  FTSLLEQLDQSMDSGSEDEDEDSDDEQRDKPHTITELPELSKYFTLGQWLRCVVVKNSAL 208

Query: 201  DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF 260
            D  KK+    +I LS+  S +      E + +   +   VKSIEDHG +L  G+   TGF
Sbjct: 209  DSQKKK--NSRIELSIEPSKV-NLFETEDLAKHTTVQCAVKSIEDHGALLDLGVQDVTGF 265

Query: 261  LPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKVVY-LSSDPDTVSKCVTKDLKGISIDL 318
            +   +L++    DV PG + L  + +  DRT  V +  ++    VS+         S+D 
Sbjct: 266  ISNKDLSKMG--DVMPGSVFLANITKRGDRTATVNFEFTAKNSKVSQIS-------SVDA 316

Query: 319  LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN---TFPTTNWKNDYNQHKKVNA 375
            ++PG  +    + I  +G++        G +D F  ++    F  T+ K+ Y     +  
Sbjct: 317  VIPGHTIDFLCEKITNHGIIGKAF----GVLDGFLSESQARVFSVTDMKHKYAIGSNIKV 372

Query: 376  RILFVDPTSRAVG----------LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGL 425
            RI+    T +             L+L   LL   A  +   VG ++D  K++  D     
Sbjct: 373  RIIATLRTKQGNKVILVSALPHILSLERNLLETEAMHA-FPVGYVFDNCKLLGRD----- 426

Query: 426  LLDIPSTPVSTPAYVTISD--VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
                     S   YV++SD  + +  + K      +   V+ R+ G+  ++G        
Sbjct: 427  ---------SQYLYVSLSDERIGQIHISKAGDAITQ-EAVKARVTGYNTVDGYYQLTSDP 476

Query: 484  SAFEGLVFTHSDVKPGMVVKG-KVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGK 541
                      +D+  G ++ G ++ AV   G  +  F G  KA     H+S+  +V P +
Sbjct: 477  KLLAKPYLRSADIPVGTILSGCEITAVSGNGIELSLFDGQFKAFVAPLHISDIRLVYPER 536

Query: 542  KFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAE----ATDRLITHGWI 593
            KFK+G+++  RVL V +K R+ VT KK+LV    S + ++S + +    A +   T   +
Sbjct: 537  KFKIGSKVKGRVLHVDNKGRVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEEDGKTLATV 596

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
               +  GC V F   ++ F P  E+             +GQ V  +++  +    ++ ++
Sbjct: 597  ESFKPSGCVVTFLGNLKAFLPNKEISEAFVQRAQDHLRLGQTVVVKVLEHVAKQSKVIVT 656

Query: 654  FMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLAD- 706
              +  +  SE     +  LV G  +VDV     T ++VVV +   G  +G I   HL+D 
Sbjct: 657  RKVS-SEDSEKQKAAINDLVVGRSIVDVTVVEKTKDSVVVELNDVGL-RGVIYVGHLSDS 714

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ--LP---SDASHI 759
             LE    +   ++ G    Q +V+D +    +  +S K SLI  A +  LP    D    
Sbjct: 715  KLEQNRALLKKLRIGSSL-QGVVMDKDVKTRVFNMSCKKSLIKDASKDILPLTFVDIKDK 773

Query: 760  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
             PN+ +HGYV +I + G FV F G+  G    S A + +  D+ K +Y+ QSV   +L  
Sbjct: 774  DPNTPMHGYVKSISDRGIFVAFTGKFVGLVLPSYATESRDVDIFKKFYLNQSVTVYLLRT 833

Query: 820  NSETGR--ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
            + E  R  +T+S  Q+     D++           +A +       + +K +  + +G++
Sbjct: 834  DEENERFLLTMSPPQTSNKKEDSN---------HDVAAVNPVD---ASVKIISQYSVGTI 881

Query: 878  IEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAILDV 927
             + +V   +     VV++   H         D +  I + +   A  +SG VI   ++  
Sbjct: 882  TKARVKSVKKTQLNVVLADNLHGRVDASEIYDTFEEIENPKEPLAKFKSGDVIDVKVIGF 941

Query: 928  --AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENY 985
              +K  + + +S +T  ++   E ++ + A K           G +Q +     +   + 
Sbjct: 942  HDSKTHKFLPISHRT-GVNTVLELSAKKSALK-----------GAYQPIE-FSGMKNGDE 988

Query: 986  LVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045
            L+  +  +     + ++S     K P  +  +  SV    +   S      L + +K + 
Sbjct: 989  LIGFVNNFAKGFIWLTLSPALKAKIPDFELSDDGSVFTGNLD-ESFPLGCALKVKVKELD 1047

Query: 1046 ETETSSSKRAKKKSSYDVGSL-----VQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
                  S  A+K +  D+  +     + A I ++    L L  G    G   +T+  ++ 
Sbjct: 1048 PAHKIVSVSARKHAITDIKDIKVADKLPARIVKVADSYLLLDLGNRLTGVAFVTDALNEF 1107

Query: 1101 SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
            S  + +++ + KIG  + A ++      D++   +  LS++    T   I S       D
Sbjct: 1108 SLSLRSVYED-KIGSMILASVVG----VDVENKKI-NLSLRTEDATDRYISS-----HKD 1156

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +  G  V G++  V ++   + +SR L+A  F+  S    + ++E+++ +   + +TG V
Sbjct: 1157 LKQGDVVRGFIKSVTDKGIFVYLSRTLQA--FVPVSKLTDAYIKEWKKFYKTMQPITGKV 1214

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
            ++   + ++L L ++  +     K +    D     +  GDI  G +  +     G+ V+
Sbjct: 1215 VNCESDSRIL-LTMKESEVNGELKILKSYAD-----LKSGDIFDGSVKNVTD--FGVFVK 1266

Query: 1281 IGPHL--YGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318
            +   L   G  H +E+ +  + D    + EG  VK  +L+
Sbjct: 1267 LHNTLNVTGLAHKSEISDSKIDDLSLLFGEGDKVKAIILK 1306


>gi|167516896|ref|XP_001742789.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779413|gb|EDQ93027.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1691

 Score =  367 bits (943), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 375/1518 (24%), Positives = 684/1518 (45%), Gaps = 217/1518 (14%)

Query: 186  IFHVGQLVSCIVLQLDDDKKEI---GKRKIWLSLRLS-LLYKGLSLETVQ---------- 231
            +FHVGQ + C V +  +DK+ +     R I  +L +  +L K    +T Q          
Sbjct: 169  LFHVGQQLVCAV-KAKEDKRLLLTTDPRLIHANLDVDDILQKAHRSQTPQLLSLTLMDSR 227

Query: 232  ---------EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL---AENSGIDVKPGLL 279
                     +G +L A V+S+EDHGY++  G+    GFLP        +  G ++ PG  
Sbjct: 228  HWSPPCAHCQGRLLPACVQSVEDHGYVVDLGIDGAQGFLPTKAAKLHVKQLGRNLVPGEP 287

Query: 280  LQGVVR-SIDRTRKVVYLSSDPDTVSKCVTKDLKG--ISIDLLVPGMMVSTRVQSILENG 336
            L  V   +   + +VV +S +   +SK  T +L      +  L PG+ V  +VQ +   G
Sbjct: 288  LFCVTTGTTAGSTRVVQVSIN---ISKLRTAELSTNEAVMSTLRPGLQVRGKVQQVHAKG 344

Query: 337  VMLSFLTYFTGTVDIFHLQ-NTFPTTNWKND--YNQHKKVNARILFVDPTSRAVGLTLN- 392
            ++L    +  G   I H+  +  PT     +  Y   + + AR++F+D  ++ +  +L  
Sbjct: 345  LVLQSGGFSIG---IHHVHFDQLPTEKKTTEQLYTVGQTLTARVIFIDLANKVILASLRQ 401

Query: 393  ----------PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL---DIPSTPVSTPA- 438
                      P  +  R P  HV+            VD+  G+L      P      PA 
Sbjct: 402  PHLQIDDCTLPLPIGTRLPSCHVRF-----------VDQAFGVLAAGQPAPGHARGVPAE 450

Query: 439  --------YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
                    +  IS + EE V  + K ++ G+    R++  +  +G+ +        +   
Sbjct: 451  EDTPEVLGFAHISRLLEEHVETVPKSFRRGTAHEGRVVAQQPFDGIYSFSFAPKDLKVPF 510

Query: 491  FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
                 ++ G++V+G V+++   G +++   G++A  P  H+++  +  P KKFK G ++ 
Sbjct: 511  LAAESIEVGLLVQGSVLSLIPSGMVIELASGIQARVPSEHLADVMLTHPEKKFKAGDKVK 570

Query: 551  FRVL------GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
             RVL      G K  RI VT KKTLV+S L I+ +  +A   + THG I+K+   GC V 
Sbjct: 571  GRVLSNEKLKGSK-HRIKVTLKKTLVRSDLPIIKNMHDAQPGMRTHGCISKVMDKGCIVS 629

Query: 605  FYNGVQGFAP-----RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            FYN  +  +       + +  + GC+         VV+C +++  P    + L+F    T
Sbjct: 630  FYNQARRLSALPLFQNNAILANRGCK-------FMVVECGVLNCDPQENSLILTFRAAKT 682

Query: 660  RVSEDDL-------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 712
             V++          ++ GSL +  V  V  + + V  +     +  +   HL DH   AT
Sbjct: 683  SVADRGARDAQLKRIEAGSLEAVEVVAVAEDMLTVKFVESPLVQTELRAGHLTDHPSLAT 742

Query: 713  VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL--INSAQQLPSDASHIHPNSVVHGYVC 770
             +    K G + + + VL+     + +S K  L      + LP +   +    V   Y+ 
Sbjct: 743  ALCRTYKKGDKLEAV-VLEKRGRRVTISCKPQLKAQTKVESLPKELDDLKLGQVFPAYIR 801

Query: 771  NIIETGCFVRFLGRLTGFAP----RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
            ++++ GCF+  +  L+G  P      + VD  +A     ++  Q+V   + ++N E  R 
Sbjct: 802  SVLDYGCFIGTIHGLSGLVPLRQLAKRYVDNPKA----FFHPDQTVLVAVSEINKEQNRA 857

Query: 827  TLSLKQSCCSSTDA-SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
              S+K+    +     +MQ    L + +A     K   S  +    +  G  I   + E 
Sbjct: 858  VFSMKEDVIGAVAVVPYMQS---LAKDMARFAGIKD--SPGRRAAPYHHGQAISVLIQEI 912

Query: 886  NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945
              FGVV + ++   +  F+T  Q  G   E G  +   +LD+   + ++D++LK   +  
Sbjct: 913  KPFGVVGTTKDGVPI--FVTKEQRQGIECEVGVELPGRVLDIDYEKGVLDVTLKPELVSA 970

Query: 946  FREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDY 1005
              +   + +  K KR           + V   VE+VK  + V+S PE   ++ Y     Y
Sbjct: 971  SSDNGKDSKTGKGKRSHPTKLPFAKKEEVQGRVELVKVTHAVVSGPE--RTLLYCPTQTY 1028

Query: 1006 NTQKFPQKQFLNGQSVIATVMALPS------------SSTAGRLLLLLKAI--------- 1044
            N ++ P K+F+ G     TV+++ +            +S   +L LL   +         
Sbjct: 1029 NDRREPFKRFVAGSKATVTVLSVGNPEFVVGQATVQWASQRSQLALLPLYLHFCMLIVRD 1088

Query: 1045 ------SETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
                   E+E ++S+ A       VG +V+AE+T+    +L+L+      GR+  TEV D
Sbjct: 1089 CFYGWKQESEPTTSELA-------VGQVVEAEVTKAGQTQLQLRLPEKRSGRVLATEVLD 1141

Query: 1099 DKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSE 1149
            +     +  F  +  G  +  RI+   ++   +         K  + E S+KPS+L   E
Sbjct: 1142 ENDTSAQP-FKAYHKGDKIQVRILGFRDQKTRRFMPITQKFLKRHVAECSLKPSVLAAKE 1200

Query: 1150 IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR 1209
            +    + E   V +GQ   G V +V      + ++ +++ ++ +++     ++ +  +++
Sbjct: 1201 LPP--MLEREAVEVGQERWGVVSEVGERCLWVLLAPNVRGRINLVNLGAAATDPKALKKQ 1258

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
            F IG      ++ +++  KLL L              ++++++ Q  IH G +V   + +
Sbjct: 1259 FGIGMRHKFRIIIMSE--KLLEL--------------ELASESSQE-IHVGSVVSASLKR 1301

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVL------EISRTV 1323
            I++  G  ++ +G   +G V  T++ +   ++P    D  +  +  V+            
Sbjct: 1302 IVNRFG--IMHLGHGRFGAVDITDVDDKLHAEPFKTLDRSKVYRAVVIGGENLAATGNMG 1359

Query: 1324 RGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG 1382
                 + LSLR S ++G ++T +S L            ++ED+  + + +G V N T +G
Sbjct: 1360 SAIGDIRLSLRPSEVEGDAATKASVL------------RMEDVDTDQVHRGVVCNATDEG 1407

Query: 1383 CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442
             F+ LSR + A+V ++NLSD +V   +K F +G LV GR+++      R+E++LK SD  
Sbjct: 1408 VFVALSRNVTARVQIANLSDLFVRDIKKAFKVGTLVQGRIMA--KTDGRLEMSLKKSDV- 1464

Query: 1443 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIET 1501
              S + +  +  L  G  V G IKRVESYG+FI I+++ NL G+ H+SE ++  ++++  
Sbjct: 1465 DPSGTTLLRIDTLEQGQHVTGVIKRVESYGVFIVIDDSANLTGMAHISECADQRIEDLNK 1524

Query: 1502 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVG------ 1555
            +Y AG+ VK  +LKVD +K+RISLG+K SYF  D   L  + +E +DEA    G      
Sbjct: 1525 LYSAGDAVKAVVLKVDVDKKRISLGIKPSYF--DDAGLPQAMDESADEASAADGDASGDE 1582

Query: 1556 -SYNRSSLLENSSVAVQD 1572
               +   +L+  +VA+Q+
Sbjct: 1583 SDADADDVLDTDAVALQE 1600


>gi|452986595|gb|EME86351.1| hypothetical protein MYCFIDRAFT_45277 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1795

 Score =  367 bits (941), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 401/1537 (26%), Positives = 697/1537 (45%), Gaps = 211/1537 (13%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV- 556
            PG +    V  V   G   +  G +       H +   +    KKFK+G++L  R+    
Sbjct: 353  PGTLANVLVTEVTPLGIAGKIMGLLDVTADTVHSNAVGVEDMSKKFKIGSKLKARITYAL 412

Query: 557  ----KSKRITVT---HKKTLVK--SKL---AILSSYAEATD--------RLITHGWITKI 596
                +S ++ V+   H   L    +KL   A     A+A +        +++    +T++
Sbjct: 413  PQVDESTKVGVSLLDHVLALTPAPTKLPGNATFKLKAQAKEIEQALPLSKILDEAKVTRV 472

Query: 597  -EKHGCFV-------RFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIP 645
              + G F+       R    +  FA  S+L    +D     S  Y  G V K R++S  P
Sbjct: 473  LSQQGVFLAVSRKEGRGERTITAFAHISQLSDQHIDTLSSTSGSYKPGTVHKARVLSYNP 532

Query: 646  ASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAVVVYVIAK--GYSKGT 698
                  +S    ++    +  +DL K+G  V G VD  +    + V  ++ K      G 
Sbjct: 533  IDDIYRVSLKQSVLDQAFLRLEDL-KVGQTVKGSVDKLIYGSKSGVTGILVKLSDNVNGL 591

Query: 699  IPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLI-NSAQQLPSDA 756
            +P  HL+D        +S  + G E   ++L +  E   + L+ K SL+ + +  L  D 
Sbjct: 592  VPEMHLSD--TQLRFPESKFRAGSEVKARVLSVHPEERQIRLTLKKSLLEDDSTSLWKDY 649

Query: 757  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
              + P     G +  + + G  ++F G +  + P ++  +      S+ Y +GQ+V   I
Sbjct: 650  HDLEPGMTSRGTIIALHDNGAVIQFYGAVRAWLPVAEMSESWIESPSEFYRLGQTVNVRI 709

Query: 817  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
            + V+ E  R    +K +C    D  F QE     ++I        +G EL          
Sbjct: 710  VSVSPEAER----MKVTCKDGGD--FTQEQSDAWDRI--------HGGEL---------- 745

Query: 877  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
             +   V E     +++  +     +G     +L      S +  Q+A+  +   E+L +L
Sbjct: 746  -VSACVTEKTADSILLDLD-----HGLKGIIRLGHLVDNSEAKAQSAMKRIRVGEKLKNL 799

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
                + +D                K+E S+ + +    + + +  K   L+ S  +    
Sbjct: 800  ----LVLD----------------KQERSRTVVLSNKPSMVKDAAKPGKLIKSFSDARPG 839

Query: 997  IGYASVSDYNTQKFPQKQFLNGQ-SVIATVMALPSSS----------------------T 1033
            I +       TQ     +F NG   +I   + LP  S                      T
Sbjct: 840  IKFHGFVRNITQDSVYAEFPNGVVGLITKSLLLPEMSNQPSFGLRRDQTLTVWVTDVDLT 899

Query: 1034 AGRLLLLLK---AISETETSSSKRAKKK-------------SSYDVGSLVQAEITEIKPL 1077
              R LL ++     ++TETS ++ A +              + + +G++V+A I  +K  
Sbjct: 900  RQRFLLTMREPGQSAQTETSENRNATESDVKNAVDPAISSMADFALGTVVKARIASVKAT 959

Query: 1078 ELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQ--TVTARIIAKSNKPDMK-- 1131
            ++ ++      GR+ ++EV D   ++        N K+ Q  T+  +I+   +    +  
Sbjct: 960  QINVRLADNVQGRVDVSEVFDSWDDITNKAAPLQNDKLKQNDTIDVKILGIHDARSHRFL 1019

Query: 1132 -------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1184
                   K  ++ELS KPS +     G + L     V  G     +V    +      +S
Sbjct: 1020 PISHRGGKVPVFELSAKPSRV---RGGDESLLAMDSVKQGASYLAFVNNHSDNCVWANLS 1076

Query: 1185 RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             +++ ++ ++D + +  +LQ  + RF +G A+   V S++     L L  +   + ++ K
Sbjct: 1077 PNVRGRVSLMDLSDDVGQLQNVENRFRVGCALQVKVKSVDTTSNKLDLTAK---ENLTRK 1133

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             + +           G +V  R++KI     G+ V I   +   V   EL     SD   
Sbjct: 1134 ELSL-----------GMVVPARVTKISEH--GITVMIADDIVCHVPLVEL-----SDDYD 1175

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ  K +V+ +         V LSL      +S   S  LS+ +     H+ +   
Sbjct: 1176 QTNPGQHRKNEVVRVCV-------VGLSLPDKRVFVSLRPSKVLSSSLPVKDAHITEASQ 1228

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            L P  IV+G+VK V  KG F+ L  ++DA V +S+LSD +V+     + + +LV GRV++
Sbjct: 1229 LKPGAIVRGFVKRVAEKGIFVSLGSRVDALVHISDLSDQFVKDWPSIYEVNQLVQGRVVT 1288

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN--L 1482
            V+  S +V+++LK S      Q  +  + +L  G  V G++++VE +G F+ I+NT   L
Sbjct: 1289 VDAASGQVQLSLKRSHVDNDYQPPMT-IHDLKQGMTVTGKVRKVEDFGAFVDIDNTQPRL 1347

Query: 1483 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1542
             GLCH SE++   ++++   Y +G+ VK K+L VD + R+ISLG+K+SYF N+A+     
Sbjct: 1348 SGLCHRSEVAAKRIEDVRKHYSSGDVVKAKVLSVDPDSRKISLGLKASYFSNEAE----I 1403

Query: 1543 SEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPP-----L 1597
            SE+ES +  E+V   +   + E S         ++E G  + L++++   S        +
Sbjct: 1404 SEDESGDESEDVDMEDGVEVEEES---------DAEGGVEVDLSELQEADSDADEAADAM 1454

Query: 1598 EVNLDDEQPDMDNGISQ---NQGHTDEAK-TIDEKNNRHAKKKEKEEREQEIRAAEERLL 1653
            EV+ D E   +  G+       G  D  + T  +++       +K +R+ EI+      L
Sbjct: 1455 EVDADIEST-VKGGLKTAGFQWGEPDVGRDTAADESEPETTSTKKRKRKPEIKEDRTGDL 1513

Query: 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK 1713
            +K  PR+  +FER + S PN+S +WI+YMAF L +++V+KAR IAERAL+TI+IRE  EK
Sbjct: 1514 DKFGPRSDSDFERHLLSQPNNSGLWIQYMAFQLELSEVQKARDIAERALRTIHIRETEEK 1573

Query: 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLY 1773
            ++IWVA+ N+E EYG+  +E V  VF+RA +  DP ++H  L  +Y    +   AD +  
Sbjct: 1574 MHIWVAWLNMEIEYGD--DERVEDVFKRACEVQDPLEMHERLANIYISAGRLDQADAVFE 1631

Query: 1774 KMI--KKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829
            K++  K F+ S  VW      L+      +  +A+  RAL S+   ++ K +++ A LEF
Sbjct: 1632 KIVANKNFRASPDVWYNYATFLMNNLGAADRARALQSRALKSISPKENRKLVAKFAALEF 1691

Query: 1830 --KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887
              +NG A+RGRS+FE ILS+ P  +  W  ++D E     +D  R L+ER     +  ++
Sbjct: 1692 HSENGTAERGRSVFEAILSDSPHWSSGWDQWVDLERSREAIDKTRALYERISQQKMKKRR 1751

Query: 1888 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
             KF+FKK+LEYE+  G+E+ +E VK  A EYV    A
Sbjct: 1752 AKFVFKKWLEYEEKEGKEKDVERVKALASEYVRKLAA 1788



 Score =  181 bits (458), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 218/894 (24%), Positives = 385/894 (43%), Gaps = 127/894 (14%)

Query: 1   MAASSRKS---QKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRG 57
           M+A  RK+   ++ S K      K  +++ K  +K ++++ E + L      +   FPRG
Sbjct: 1   MSAVKRKAVTDERPSKKAKSSEAKDEQSKEKRPRKSVDNSGEKRVLKSILQTEERSFPRG 60

Query: 58  GGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGIS- 116
           G   LT  E  +I A+  AE +A            KK+ E    +++DD   LF D    
Sbjct: 61  GAGPLTALENKQIQAQ--AERDA------------KKELETGQQQSLDD-EDLFDDAADE 105

Query: 117 -----------------GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG 159
                            G + R    +T KN++ G  + G +  + ++D+ + LP  + G
Sbjct: 106 SRSKKKRKSDAKKGKSEGTITRIQG-LTYKNLTVGSVVLGRITAITDRDIALALPNNMTG 164

Query: 160 LARAADALDPILDNEIE----ANEDNL-------LPTIFHVGQLVSCIVLQL---DDDKK 205
            A+   ++ P +++++E    A E++        L  +FH+GQ +   V       ++ K
Sbjct: 165 YAKIT-SISPKVNSKLEQIMLAEEEDAEEHGDVDLKELFHIGQWLRAAVTATATEPEEGK 223

Query: 206 EIGK------RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSF 257
           + GK      + I LS+  +     LS ++V     + A V+S+EDHG ++  GL     
Sbjct: 224 DKGKGQSKPKKHIELSIEPAATNGRLSADSVVTHSTIQASVRSVEDHGLVMDVGLIEEHA 283

Query: 258 TGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRT----RKVVYLSSDPDTVSKC-----V 307
           TGF+ +  L     +   K G ++  +V   D+     RKV+ LS D + ++       V
Sbjct: 284 TGFIAKKALGAAWELSKAKEGQVMLCLV--TDKVGGDGRKVLKLSPDFNKLNGSQSNAPV 341

Query: 308 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 367
             D    ++D  +PG + +  V  +   G+    +     T D  H  N     +    +
Sbjct: 342 VSD--APTVDAFLPGTLANVLVTEVTPLGIAGKIMGLLDVTADTVH-SNAVGVEDMSKKF 398

Query: 368 NQHKKVNARILFVDPT---SRAVGLTLNPYLLHNRAPPSHVK------------------ 406
               K+ ARI +  P    S  VG++L  ++L     P+ +                   
Sbjct: 399 KIGSKLKARITYALPQVDESTKVGVSLLDHVLALTPAPTKLPGNATFKLKAQAKEIEQAL 458

Query: 407 -VGDIYDQSKVVRVDRGLGLLLDIPSTP----VSTPAYVTISDVAEEEVRKLEK---KYK 458
            +  I D++KV RV    G+ L +         +  A+  IS ++++ +  L      YK
Sbjct: 459 PLSKILDEAKVTRVLSQQGVFLAVSRKEGRGERTITAFAHISQLSDQHIDTLSSTSGSYK 518

Query: 459 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV------DSF 512
            G+  + R+L +  ++ +    LK S  +       D+K G  VKG V  +         
Sbjct: 519 PGTVHKARVLSYNPIDDIYRVSLKQSVLDQAFLRLEDLKVGQTVKGSVDKLIYGSKSGVT 578

Query: 513 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 570
           G +V+    V  L P  H+S+ ++  P  KF+ G+E+  RVL V  + ++I +T KK+L+
Sbjct: 579 GILVKLSDNVNGLVPEMHLSDTQLRFPESKFRAGSEVKARVLSVHPEERQIRLTLKKSLL 638

Query: 571 KS-KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
           +    ++   Y +    + + G I  +  +G  ++FY  V+ + P +E+       PS  
Sbjct: 639 EDDSTSLWKDYHDLEPGMTSRGTIIALHDNGAVIQFYGAVRAWLPVAEMSESWIESPSEF 698

Query: 630 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLGSLVSGVVDVVTPNAV 685
           Y +GQ V  RI+S  P + R+ ++         E     D +  G LVS  V   T +++
Sbjct: 699 YRLGQTVNVRIVSVSPEAERMKVTCKDGGDFTQEQSDAWDRIHGGELVSACVTEKTADSI 758

Query: 686 VVYVIAKGYSKGTIPTEHLADHLE--HATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSA 741
           ++  +  G  KG I   HL D+ E    + MK  I+ G +   LLVLD +  S  ++LS 
Sbjct: 759 LLD-LDHGL-KGIIRLGHLVDNSEAKAQSAMKR-IRVGEKLKNLLVLDKQERSRTVVLSN 815

Query: 742 KYSLINSAQ---QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 792
           K S++  A    +L    S   P    HG+V NI +   +  F   + G   +S
Sbjct: 816 KPSMVKDAAKPGKLIKSFSDARPGIKFHGFVRNITQDSVYAEFPNGVVGLITKS 869



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 125/302 (41%), Gaps = 36/302 (11%)

Query: 189  VGQL--------VSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
            VGQL        V C  LQ+     +    K+ L+ + +L  K LSL     GMV+ A V
Sbjct: 1092 VGQLQNVENRFRVGC-ALQVKVKSVDTTSNKLDLTAKENLTRKELSL-----GMVVPARV 1145

Query: 241  KSIEDHG--------YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRK 292
              I +HG         + H  L   +    + N  ++   +V     ++  V  +    K
Sbjct: 1146 TKISEHGITVMIADDIVCHVPLVELSDDYDQTNPGQHRKNEV-----VRVCVVGLSLPDK 1200

Query: 293  VVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 350
             V++S  P  V  S    KD        L PG +V   V+ + E G+ +S  +     V 
Sbjct: 1201 RVFVSLRPSKVLSSSLPVKDAHITEASQLKPGAIVRGFVKRVAEKGIFVSLGSRVDALVH 1260

Query: 351  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN-PYLLHNRAPPSHVKVGD 409
            I  L + F   +W + Y  ++ V  R++ VD  S  V L+L   ++ ++  PP  + + D
Sbjct: 1261 ISDLSDQF-VKDWPSIYEVNQLVQGRVVTVDAASGQVQLSLKRSHVDNDYQPP--MTIHD 1317

Query: 410  IYDQSKV---VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
            +     V   VR     G  +DI +T          S+VA + +  + K Y  G  V+ +
Sbjct: 1318 LKQGMTVTGKVRKVEDFGAFVDIDNTQPRLSGLCHRSEVAAKRIEDVRKHYSSGDVVKAK 1377

Query: 467  IL 468
            +L
Sbjct: 1378 VL 1379



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 141/328 (42%), Gaps = 39/328 (11%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKPGL 278
            L++++V++G    A+V +  D+    +   P+  G +   +L+++ G         + G 
Sbjct: 1048 LAMDSVKQGASYLAFVNNHSDNCVWANLS-PNVRGRVSLMDLSDDVGQLQNVENRFRVGC 1106

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             LQ  V+S+D T   + L     T  + +T+  K +S+     GM+V  RV  I E+G+ 
Sbjct: 1107 ALQVKVKSVDTTSNKLDL-----TAKENLTR--KELSL-----GMVVPARVTKISEHGIT 1154

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK---VNARILFVDPTSRAVGLTLNPYL 395
            +         V +  L + +  TN      QH+K   V   ++ +    + V ++L P  
Sbjct: 1155 VMIADDIVCHVPLVELSDDYDQTN----PGQHRKNEVVRVCVVGLSLPDKRVFVSLRPSK 1210

Query: 396  LHNRAPP---SHVKVGDIYDQSKVVR--VDRGL--GLLLDIPSTPVSTPAYVTISDVAEE 448
            + + + P   +H+          +VR  V R    G+ + + S      A V ISD++++
Sbjct: 1211 VLSSSLPVKDAHITEASQLKPGAIVRGFVKRVAEKGIFVSLGS---RVDALVHISDLSDQ 1267

Query: 449  EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV---FTHSDVKPGMVVKGK 505
             V+     Y+    V+ R++      G     LK S  +       T  D+K GM V GK
Sbjct: 1268 FVKDWPSIYEVNQLVQGRVVTVDAASGQVQLSLKRSHVDNDYQPPMTIHDLKQGMTVTGK 1327

Query: 506  VIAVDSFGAIVQFPGGVKALCPLPHMSE 533
            V  V+ FGA V        L  L H SE
Sbjct: 1328 VRKVEDFGAFVDIDNTQPRLSGLCHRSE 1355



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 9/181 (4%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +KPG +V+G V  V   G  V     V AL  +  +S+  +      ++V   +  RV
Sbjct: 1227 SQLKPGAIVRGFVKRVAEKGIFVSLGSRVDALVHISDLSDQFVKDWPSIYEVNQLVQGRV 1286

Query: 554  LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--- 608
            + V   S ++ ++ K++ V +      +  +    +   G + K+E  G FV   N    
Sbjct: 1287 VTVDAASGQVQLSLKRSHVDNDYQPPMTIHDLKQGMTVTGKVRKVEDFGAFVDIDNTQPR 1346

Query: 609  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL----SFMMKPTRVSED 664
            + G   RSE+      +    Y  G VVK +++S  P SR+I+L    S+      +SED
Sbjct: 1347 LSGLCHRSEVAAKRIEDVRKHYSSGDVVKAKVLSVDPDSRKISLGLKASYFSNEAEISED 1406

Query: 665  D 665
            +
Sbjct: 1407 E 1407


>gi|334314101|ref|XP_001378624.2| PREDICTED: protein RRP5 homolog [Monodelphis domestica]
          Length = 1796

 Score =  366 bits (940), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 333/1160 (28%), Positives = 545/1160 (46%), Gaps = 117/1160 (10%)

Query: 54   FPRGG----GHSLTQRERDEIHAEVDAEFE-AVERGLHKKNKKKKKKTERKANETVDDLG 108
            FPRGG     H +   ++   H   D  F+   E G  K+ +  ++  + K ++T     
Sbjct: 8    FPRGGSKKKAHPVKAPQQPIEH---DNLFDIPTEEGSRKRKRNPEQAAKNKRSKTEKKEP 64

Query: 109  SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---AD 165
            S      SG L       +++ +S GM+L G V EVN  +LVI LP  L G  +A    D
Sbjct: 65   SKSEAEQSGIL-------SIEVLSEGMRLLGCVKEVNNLELVISLPNDLWGYVQATNICD 117

Query: 166  ALDPILDNEIEANE--DNLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
            A    L+ +++  E  ++L P   +F  G LV C V  L    K+   + I LSL    +
Sbjct: 118  AYTKKLNEQVDREEPLEDLAPLSKLFQPGMLVRCAVSSLKSTSKK--NKSIKLSLNPKDV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
               LS   ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  ++ 
Sbjct: 176  NGVLSPAALKPGMLLTGTVDSVEDHGYLVDIGVGGTKAFLPWQKEQEYVKQKNKGTKLQV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +      V LS+    VS  +  + +  ++D L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCLIEEVKGNGGSVRLSTIQSEVSAAIATEEQNWTLDNLLPGLVVKAQVQKVTPYG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            + LSFL+ FTG VD  HL      +     Y Q + V A IL V P +++V LTL+   L
Sbjct: 296  LSLSFLSSFTGLVDFMHLD-----SKKTGHYFQTQMVRACILSVHPRTKSVRLTLHSSFL 350

Query: 397  HNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P +   H  +G + +   V       G    +    +   AY  I  +++ E    
Sbjct: 351  QAGRPITRLCHHLIGAVLNDVPVQSFYTKAGATFRLKDGSL---AYARIRHLSQTEKSFK 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             +K+K G+  R R++ F  ++ LA   LK S  E     + D++PG +VKGKV  + S+G
Sbjct: 408  PEKFKPGNLHRCRVIDFSPMDDLALLSLKTSIIEAPFLRYHDIQPGQIVKGKVFTLRSYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
             IV+    +K L P  H+++ +I  P KK++V  E+  RVL    ++K++ +T KKTLV+
Sbjct: 468  MIVKVTEQIKGLVPTLHLADVQIRNPQKKYRVQDEVKCRVLMCDPENKKLLMTLKKTLVE 527

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            S L  L++Y EA   L THG+I+ I+  GC V+FYN V+G  P+ ELG  P   P  +++
Sbjct: 528  SSLPALTNYKEAKPDLQTHGFISSIKDCGCIVKFYNDVRGLVPQRELGAQPISAPEEVFY 587

Query: 632  VGQVVKCRIMSSIPASRRINLSF-------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNA 684
            VGQVVK  ++ S P   R+ LSF       M    +  +  +VK G LV   V   T   
Sbjct: 588  VGQVVKVTVLKSEPEQERMLLSFRLSNDKEMESTAQSQKKAMVKTGQLVDVKVKKKTEKG 647

Query: 685  VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 744
            + V ++    S   +PT HL+D++ ++ ++   ++ G    ++L L +   +++L  K +
Sbjct: 648  LEVSILPDDIS-ALLPTTHLSDNVTNSQLLCYWLQAGDILHKVLCLSHSDGHIVLCRKPA 706

Query: 745  LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
            LI++ +  Q P   S   P  ++ G+V +I   G FV+F   L+G AP+S   D     +
Sbjct: 707  LISAVESGQDPKVFSEFQPGMLLTGFVKSIKAYGIFVQFPSGLSGLAPKSALSDKFVTTI 766

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL---LEE--KIAMLQ 857
            S  +  GQ+V + + +V+ E  R+ LSL+ S  S  D +      L   LEE   +  L 
Sbjct: 767  SDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDVSQEDTTASSLTLLSQCLEELQGVRSLM 826

Query: 858  SSKHN---GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI----THHQLA 910
            SS+ +    +  +   G ++  V++     S+D  +V S   +  V G +     +HQ  
Sbjct: 827  SSRDSVLTQTLAEMTPGLLVDLVVQDM---SSDGSLVFS---NGSVPGLVLRASKYHQ-G 879

Query: 911  GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGV 970
            G  V+ G   +A IL V   +  V +SL+   +        NR+ ++ K+  E       
Sbjct: 880  GKAVDPGQRTKAVILHVDTQKSEVHVSLRQELV--------NRKVKQLKKDTEH------ 925

Query: 971  HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSV-------- 1021
                 A++E +++ + + SL E    I +   S  N T +F  ++   GQ V        
Sbjct: 926  ----RAVIEHLEKTFAIASLVETGQLIAFPVASHLNDTFRFDSEKLQVGQGVSVIIKSTK 981

Query: 1022 ---IATVMALPSSSTAGRLLLLLKAISET---ETSSSKRAKKKSSYDVGSLVQAEITEIK 1075
               I   +A+  SS   R   L     E+   +        +K +  +G +V   +  IK
Sbjct: 982  PCDIGLFLAV-ESSVKKRTPALPSVAPESAGQDPGVVSELLEKPTLPIGEMVTGTVKSIK 1040

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS---------- 1125
               + +    G  G IH +++ DD S+      +  K+G  VTAR+I +           
Sbjct: 1041 ATHVIVTLENGLTGYIHASQILDDVSHGTHPT-TTLKVGNPVTARVIGQRTWLTHKSLPI 1099

Query: 1126 NKPDMKKSFLWELSIKPSML 1145
            + P   ++ + ELSI+PS L
Sbjct: 1100 SHPSSTQT-VSELSIRPSEL 1118



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
            +  D+ P  IV+G V  + S G  + ++ ++   V   +L+D  + +P+K++ +   V  
Sbjct: 446  RYHDIQPGQIVKGKVFTLRSYGMIVKVTEQIKGLVPTLHLADVQIRNPQKKYRVQDEVKC 505

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI---GQIKRVESYGLFITI 1477
            RVL  +P +K++ +TLK    +T  +S +  L+N       +   G I  ++  G  +  
Sbjct: 506  RVLMCDPENKKLLMTLK----KTLVESSLPALTNYKEAKPDLQTHGFISSIKDCGCIVKF 561

Query: 1478 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             N ++ GL    EL    +   E ++  G+ VKV +LK + E+ R+ L  + S
Sbjct: 562  YN-DVRGLVPQRELGAQPISAPEEVFYVGQVVKVTVLKSEPEQERMLLSFRLS 613



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 108/243 (44%), Gaps = 21/243 (8%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            I  G IV G++  + S   G++V++   + G V    L ++ + +P   Y     VKC+V
Sbjct: 450  IQPGQIVKGKVFTLRSY--GMIVKVTEQIKGLVPTLHLADVQIRNPQKKYRVQDEVKCRV 507

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L      +      ++L+ +L              V++    L   ++  P++   G++ 
Sbjct: 508  LMCDPENKKLL---MTLKKTL--------------VESSLPALTNYKEAKPDLQTHGFIS 550

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            ++   GC +     +   V    L    + +PE+ F +G++V   VL  EP  +R+ ++ 
Sbjct: 551  SIKDCGCIVKFYNDVRGLVPQRELGAQPISAPEEVFYVGQVVKVTVLKSEPEQERMLLSF 610

Query: 1437 KTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1495
            + S D    S ++    + +  G +V  ++K+    GL ++I   ++  L   + LS D+
Sbjct: 611  RLSNDKEMESTAQSQKKAMVKTGQLVDVKVKKKTEKGLEVSILPDDISALLPTTHLS-DN 669

Query: 1496 VDN 1498
            V N
Sbjct: 670  VTN 672



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 6/141 (4%)

Query: 1408 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1467
            PEK F  G L   RV+   P+     ++LKTS      ++      ++  G IV G++  
Sbjct: 408  PEK-FKPGNLHRCRVIDFSPMDDLALLSLKTS----IIEAPFLRYHDIQPGQIVKGKVFT 462

Query: 1468 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
            + SYG+ + +    + GL     L++  + N +  YR  ++VK ++L  D E +++ + +
Sbjct: 463  LRSYGMIVKV-TEQIKGLVPTLHLADVQIRNPQKKYRVQDEVKCRVLMCDPENKKLLMTL 521

Query: 1528 KSSYFKNDADNLQMSSEEESD 1548
            K +  ++    L    E + D
Sbjct: 522  KKTLVESSLPALTNYKEAKPD 542



 Score = 47.0 bits (110), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 151/729 (20%), Positives = 278/729 (38%), Gaps = 110/729 (15%)

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
            C   D S M +  LL  K +++++      +++       G +++GKV     +G++V  
Sbjct: 419  CRVIDFSPMDDLALLSLKTSIIEAPFLRYHDIQ------PGQIVKGKVFTLRSYGMIVKV 472

Query: 895  EEHSDVYGFITHHQLAGATVESGSV-------IQAAILDVAKAERLVDLSLKTVFIDRFR 947
             E   + G +    LA   + +          ++  +L      + + ++LK   ++   
Sbjct: 473  TEQ--IKGLVPTLHLADVQIRNPQKKYRVQDEVKCRVLMCDPENKKLLMTLKKTLVESSL 530

Query: 948  EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
             A +N         +EA  DL  H  +++I    K+   ++    YN   G     +   
Sbjct: 531  PALTNY--------KEAKPDLQTHGFISSI----KDCGCIVKF--YNDVRGLVPQRELGA 576

Query: 1008 QKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGS 1065
            Q    P++ F  GQ V  TV  L S     R+LL  +  ++ E  S+ +++KK+    G 
Sbjct: 577  QPISAPEEVFYVGQVVKVTV--LKSEPEQERMLLSFRLSNDKEMESTAQSQKKAMVKTGQ 634

Query: 1066 LVQAEITEIKPLELRLKFGI---GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            LV  ++   K  E  L+  I        +  T ++D+ +N    L   +     +  +++
Sbjct: 635  LVDVKVK--KKTEKGLEVSILPDDISALLPTTHLSDNVTN--SQLLCYWLQAGDILHKVL 690

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
              S+           L  KP++++  E G    +F E     G  +TG+V  +      +
Sbjct: 691  CLSHSDGH-----IVLCRKPALISAVESGQDPKVFSE--FQPGMLLTGFVKSIKAYGIFV 743

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
                 L        SA     +      F  G+ V   V ++++EK+ + L LR   D  
Sbjct: 744  QFPSGLSG--LAPKSALSDKFVTTISDHFVEGQTVVAKVTNVDEEKQRMLLSLR-LSDVS 800

Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY--------------- 1286
             + T   S   +   + E   V   +S   S +   + ++ P L                
Sbjct: 801  QEDTTASSLTLLSQCLEELQGVRSLMSSRDSVLTQTLAEMTPGLLVDLVVQDMSSDGSLV 860

Query: 1287 ---GRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
               G V    L+           D GQ  K  +L +  T +   HV  SLR  L    + 
Sbjct: 861  FSNGSVPGLVLRASKYHQGGKAVDPGQRTKAVILHVD-TQKSEVHV--SLRQEL---VNR 914

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
                L  D +    H   IE L     +   V+           + +L A  + S+L+D 
Sbjct: 915  KVKQLKKDTE----HRAVIEHLEKTFAIASLVE-----------TGQLIAFPVASHLNDT 959

Query: 1404 YVESPEKEFPIGKLVA-----------GRVLSVEPLSKRVEVTLKTSDSRTASQ-----S 1447
            +    EK   +G+ V+           G  L+VE   K+    L +    +A Q     S
Sbjct: 960  FRFDSEK-LQVGQGVSVIIKSTKPCDIGLFLAVESSVKKRTPALPSVAPESAGQDPGVVS 1018

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED--HVDNIETIYRA 1505
            E+     L +G++V G +K +++  + +T+EN  L G  H S++ +D  H  +  T  + 
Sbjct: 1019 ELLEKPTLPIGEMVTGTVKSIKATHVIVTLEN-GLTGYIHASQILDDVSHGTHPTTTLKV 1077

Query: 1506 GEKVKVKIL 1514
            G  V  +++
Sbjct: 1078 GNPVTARVI 1086


>gi|432848327|ref|XP_004066290.1| PREDICTED: protein RRP5 homolog [Oryzias latipes]
          Length = 1814

 Score =  366 bits (940), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 358/1445 (24%), Positives = 662/1445 (45%), Gaps = 126/1445 (8%)

Query: 48   DDDVPVFPRGGGHSLTQRERDEI----HAEVDAEFEAVERGLHKKNKKKKKKTERKANET 103
            +DD   FPRGG  ++ ++  D       A+VD  F+  E   +KK K + K   +   + 
Sbjct: 5    EDD---FPRGG--TVKKKSADSKIAVGRAQVDNLFQVNEPTENKKRKGRAKDESKPLKKQ 59

Query: 104  VDDLGSLFGDGISGKLPRYANKIT-LKNISAGMKLWGVVAEVNEKDLVICLPGGLRG--- 159
              D      D +    P    +I   KN+  GM + G V  V + ++ + LP GL+G   
Sbjct: 60   KSD------DALMLNAPAKNLEILHTKNVKVGMLMLGCVKTVADFEVSVGLPCGLQGFLS 113

Query: 160  LARAADALDPILDNEIEANEDNL--LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLR 217
            +    D+   +L +++E+++  +  LP +FH G ++ C+V QLD  K   G   I LS+ 
Sbjct: 114  IKNICDSYTKLLSDQLESDDAEICSLPHLFHPGMVLRCVVAQLDVTKG--GSLSIQLSIN 171

Query: 218  LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA--ENSGIDVK 275
              L+ K ++  +++ GMVL+  V+S+EDHG I+  G+     FLP   +   +N   +++
Sbjct: 172  PKLVNKSVTSSSLKAGMVLSGCVESVEDHGCIIDIGVNGTKAFLPEEAMKTEQNQLRELR 231

Query: 276  PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
             G  L  +V  +    +VV LS +P  V++   +  +G S+  L+PG++V + V+ + ++
Sbjct: 232  LGQYLTCLVERVKNDGRVVSLSVNPAAVAQACAEPRQGWSLSNLLPGLLVKSTVKKVTKH 291

Query: 336  GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
            G++L FL+ F+G VD  H++   PT+     Y +  +V A +L+V+P+SR VGL+L  +L
Sbjct: 292  GLLLDFLSSFSGQVDFLHMEPE-PTST----YTEGLQVQACVLYVEPSSRLVGLSLRRHL 346

Query: 396  LH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
            L        +P    ++G++    K+  +    G +L++P     +PA+V  + + E   
Sbjct: 347  LQPSSGIEPSPAEGDRIGEVLKGCKLAAMHHKSGAVLELPD---GSPAFVHRNHLKEPNE 403

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
               E +         RIL F  +E +    L+ S  E   + + D+K G VV+G V  + 
Sbjct: 404  PTNENRVYAAPEHTCRILDFSPMEQIHFATLRKSVIEKPFYRYQDLKAGQVVEGTVSVLL 463

Query: 511  SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 568
            S G +V     +K L P  H+S+  +  P KK+  G ++  RVL V  + K++ +T KK 
Sbjct: 464  SHGMVVHLSDHIKGLVPRTHLSDIVLKNPEKKYAPGMKVKCRVLSVDPEGKKLYLTRKKA 523

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV+S L +  +Y++A    ++HG++  I+  GC VRFYN V+G  P SEL  +P   P  
Sbjct: 524  LVESPLPLFLTYSDARPGRVSHGYVVCIKDFGCIVRFYNDVKGLVPLSELSSEPVVHPED 583

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSF-------MMKPTRVSEDDLVKLGSLVSGVVDVVT 681
            +++VGQV+K  ++   P   ++ LSF         + T    D    +G  +   V   +
Sbjct: 584  VFYVGQVLKAAVLQCDPERSKMILSFKAAVEGGAAEATEAHVD--CDVGKRLEAKVVKKS 641

Query: 682  PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
             N + V ++     +  +PT HL+DH+ +  ++   ++ G      +  +  + N+ L+ 
Sbjct: 642  VNGLEVAILPDEI-RAILPTMHLSDHVSNCPLLWESLQEGDVISDAVCFNRINLNITLTK 700

Query: 742  KYSL--INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K ++  I     +  + S +     + G+V NI+  G FV F   L G AP+S   D   
Sbjct: 701  KPAVRRILEEGAVAKNFSELTVGMQLVGWVKNIMPYGVFVEFPYGLLGLAPKSAMSDKFI 760

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGR--ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
            +D +  + +GQ+V + + +++ E  R  +TL + +  C   D      + L E K     
Sbjct: 761  SDATAAFQLGQTVFAKVTNLDEEKRRFLVTLKISEVICPEGDVYTRLINGLQERKAVKEM 820

Query: 858  SSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
             S  +G+EL + +    +G  +   V    D G +   +  +      +   + G  +  
Sbjct: 821  MSSRDGAELAQSLAALSVGERLMLTVDSVKDSGAIFKSDRLTSATVLASKQHMTGVNLTV 880

Query: 917  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            G  + A +L        VDL    V++    +    ++   K  +              A
Sbjct: 881  GQKVSAPVLH-------VDLLSACVYVSVLPKLVGKKKTLNKGYR------------YTA 921

Query: 977  IVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAG 1035
             V+ V  ++ V+SL +        + +  N     + + L+ G++    V+        G
Sbjct: 922  TVQHVDTDFAVVSLGDTAQLAVIQTRNHLNEVVIHESEKLDVGRTFPVQVVEASCEELQG 981

Query: 1036 RLLLLL--KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
              L+    +A     T+S  +A  +  +  G  +Q  +  +KP  +++    G  G +H+
Sbjct: 982  LPLVSWEHRAPQRQRTTSEGQAGSR-GHRFGEFLQGTVRAVKPTCIQVTLEDGSKGSVHV 1040

Query: 1094 TEVNDDKSNVVENL-FSNFKIGQTVTARII----AKSNK--PDMKKSFLW---ELSIKPS 1143
            ++V +     V +   S+ K+G  VTAR+I    A SN+  P     F +   EL++ PS
Sbjct: 1041 SQVVEPSQVRVGSFPTSSVKVGSRVTARVIGGWEASSNRFLPFSHPRFTYTIPELTLIPS 1100

Query: 1144 MLTVS-EIGSKLLFEECDV-SIGQRVTGYVYK--VDNEWALLTISRHLKAQLFILDSAYE 1199
             L  + ++ S    E+ ++   G  +T +V K   D     +T    +   + +L    +
Sbjct: 1101 KLDENVDLPSVSAKEKLELYKAGDEITCFVSKFHADRRSLEVTTDPSVTGTVELLAMITD 1160

Query: 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1259
            P +    ++ + +G+AV   V+ +  +     L L     G+               + E
Sbjct: 1161 PKDAGHPEKLYKLGQAVRAKVVEVGVKPSRFVLSL----TGVHK-------------LQE 1203

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            G    G ++ +   + GL V++     G     +L +    + LS + +GQ V+C +L  
Sbjct: 1204 GSSSLGIVTAVHPQL-GLQVKLPFSNTGTASVMDLTDAYRPNQLSVFSKGQLVRCFLLCQ 1262

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
             +     +H  LSLR      S  NS       D     ++ +++L    I++G+VK+V 
Sbjct: 1263 EKE---KWH--LSLRP-----SRLNSKQPKAVKDP---EVKTLDELQAGQIIRGFVKSVG 1309

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             +G FI LSR +  +  L   +  +V S     +      L++ +VLS++   + VE++L
Sbjct: 1310 EQGVFIRLSRTIIGRAQLQQATQYFVNSHSVLAEHLQPNSLLSTKVLSIDKEKEFVELSL 1369

Query: 1437 KTSDS 1441
              +D+
Sbjct: 1370 LPADT 1374



 Score =  288 bits (736), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 188/576 (32%), Positives = 299/576 (51%), Gaps = 57/576 (9%)

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEP----LSKRVEVTLKTSDSRTASQSEINNLSN 1454
            +L+D Y  +    F  G+LV   +L  E     LS R    L +   +     E+  L  
Sbjct: 1236 DLTDAYRPNQLSVFSKGQLVRCFLLCQEKEKWHLSLRPS-RLNSKQPKAVKDPEVKTLDE 1294

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKV 1511
            L  G I+ G +K V   G+FI +  T ++G   + + ++  V++   +    +    +  
Sbjct: 1295 LQAGQIIRGFVKSVGEQGVFIRLSRT-IIGRAQLQQATQYFVNSHSVLAEHLQPNSLLST 1353

Query: 1512 KILKVDKEKRRISLGM------KSSYFKNDAD-NLQMSSEEESDEAI-----------EE 1553
            K+L +DKEK  + L +      K        D  L+++ E++    +           E+
Sbjct: 1354 KVLSIDKEKEFVELSLLPADTGKPDVLPESLDLPLRLTGEQKQKHDLRQKRKRQLSEGEQ 1413

Query: 1554 VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQP------- 1606
             G  ++           +    + ED G  V  + E        +     E P       
Sbjct: 1414 KGEESQIPTKNKKKKEKRRAKADGEDSGVEVYFREEDEDEEAEDKPRRSKETPGSSGPSR 1473

Query: 1607 -DMDNGISQNQG-----------HTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1654
              +  G S ++G             + +   D+  +   +KK + E EQ+ +AAE  L++
Sbjct: 1474 LQVTAGFSWDEGLSALKPPSAAQDAESSDAEDQDRSEKTQKKSRRELEQQKKAAERALVQ 1533

Query: 1655 KDA--------PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1706
            ++A        P+    FERL+ +SPNSS +W++YMA  L    +E+ARS+AERAL+TI+
Sbjct: 1534 REAELMDPNLRPQDDSAFERLILASPNSSLLWLQYMAHHLQATQIEQARSVAERALKTIS 1593

Query: 1707 IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1766
             REE EKLN+WVA  NLEN YG   EE++ KVF+RA+Q+C+P  V+  L  +Y ++ + K
Sbjct: 1594 FREEQEKLNVWVALLNLENMYGT--EESLKKVFERAVQFCEPMPVYQQLADIYSKSNKTK 1651

Query: 1767 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825
             A+ L   M+K+F+ +  VWL     LL+Q Q +   A++QRAL SLP  + +  I++ A
Sbjct: 1652 EAESLYKTMVKRFRQNKGVWLSYGTFLLQQGQSDAASALLQRALASLPAKESVDVIAKFA 1711

Query: 1826 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1885
             LEF+ G  + GR+M + +L+ YPKRTDLWSI++D EI+ G    +R LF+R I LS+  
Sbjct: 1712 QLEFRYGNPETGRNMLDKVLTSYPKRTDLWSIFIDLEIKHGSQKEVRALFDRVIHLSVSA 1771

Query: 1886 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            KK+KF FK+YLEYEK  G  + ++ VK KA+E+VE+
Sbjct: 1772 KKIKFFFKRYLEYEKKHGTAQSVQDVKDKAVEFVEA 1807



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 21/246 (8%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            G +V G +S +LS   G+VV +  H+ G V  T L +I + +P   Y  G  VKC+VL +
Sbjct: 452  GQVVEGTVSVLLSH--GMVVHLSDHIKGLVPRTHLSDIVLKNPEKKYAPGMKVKCRVLSV 509

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                +  +   L+ + +L              V++P        D  P  +  GYV  + 
Sbjct: 510  DPEGKKLY---LTRKKAL--------------VESPLPLFLTYSDARPGRVSHGYVVCIK 552

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
              GC +     +   V LS LS   V  PE  F +G+++   VL  +P   ++ ++ K +
Sbjct: 553  DFGCIVRFYNDVKGLVPLSELSSEPVVHPEDVFYVGQVLKAAVLQCDPERSKMILSFKAA 612

Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
                A+++   ++ +  VG  +  ++ +    GL + I    +  +     LS DHV N 
Sbjct: 613  VEGGAAEATEAHV-DCDVGKRLEAKVVKKSVNGLEVAILPDEIRAILPTMHLS-DHVSNC 670

Query: 1500 ETIYRA 1505
              ++ +
Sbjct: 671  PLLWES 676



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 160/386 (41%), Gaps = 40/386 (10%)

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
            K  +   D+  GQ V G V  + +   ++ +S H+K    +  +      L+  ++++  
Sbjct: 441  KPFYRYQDLKAGQVVEGTVSVLLSHGMVVHLSDHIKG--LVPRTHLSDIVLKNPEKKYAP 498

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK--- 1269
            G  V   VLS++ E K L L           +   +    +  F+   D   GR+S    
Sbjct: 499  GMKVKCRVLSVDPEGKKLYLT----------RKKALVESPLPLFLTYSDARPGRVSHGYV 548

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
            +     G +V+    + G V  +EL +  V  P   +  GQ +K  VL+           
Sbjct: 549  VCIKDFGCIVRFYNDVKGLVPLSELSSEPVVHPEDVFYVGQVLKAAVLQCDPERSKMI-- 606

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
             LS +++++   +  +++   D D  GK LE         +V+  V  +       +L  
Sbjct: 607  -LSFKAAVE-GGAAEATEAHVDCDV-GKRLEA-------KVVKKSVNGLE----VAILPD 652

Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV----TLKTSDSRTAS 1445
            ++ A +   +LSD     P        L  G V+S      R+ +    T K +  R   
Sbjct: 653  EIRAILPTMHLSDHVSNCP---LLWESLQEGDVISDAVCFNRINLNITLTKKPAVRRILE 709

Query: 1446 QSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +  +  N S L VG  ++G +K +  YG+F+      L+GL   S +S+  + +    ++
Sbjct: 710  EGAVAKNFSELTVGMQLVGWVKNIMPYGVFVEFP-YGLLGLAPKSAMSDKFISDATAAFQ 768

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ V  K+  +D+EKRR  + +K S
Sbjct: 769  LGQTVFAKVTNLDEEKRRFLVTLKIS 794


>gi|302308948|ref|NP_986113.2| AFR566Cp [Ashbya gossypii ATCC 10895]
 gi|299790870|gb|AAS53937.2| AFR566Cp [Ashbya gossypii ATCC 10895]
          Length = 1715

 Score =  366 bits (940), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 361/1339 (26%), Positives = 628/1339 (46%), Gaps = 184/1339 (13%)

Query: 654  FMMKPTRVSEDDLVKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HL 708
             + KP   S D  + +G+++SG  +  V+ N + + +   G  K  +   H++D    + 
Sbjct: 478  LLAKPYLRSAD--IPVGTILSGCEITAVSGNGIELSLF-DGQFKAFVAPLHISDIRLVYP 534

Query: 709  EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ---LPSDASHIHPNSVV 765
            E    + S +K      ++L +DN+   + ++ K SL+++      L SD   I   +  
Sbjct: 535  ERKFKIGSKVK-----GRVLHVDNKG-RVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEE 588

Query: 766  HGYVCNIIET----GCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYVGQSVRSNILDV 819
             G     +E+    GC V FLG L  F P  +  +   QRA       +GQ+V   +L+ 
Sbjct: 589  DGKTLATVESFKPSGCVVTFLGNLKAFLPNKEISEAFVQRA--QDHLRLGQTVVVKVLEH 646

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG-SVI 878
             ++  ++ ++ K    SS D+         ++K A              +   ++G S++
Sbjct: 647  VAKQSKVIVTRK---VSSEDSE--------KQKAA--------------INDLVVGRSIV 681

Query: 879  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVA 928
            +  V E     VVV   +   + G I    L+ + +E           GS +Q  ++D  
Sbjct: 682  DVTVVEKTKDSVVVELNDVG-LRGVIYVGHLSDSKLEQNRALLKKLRIGSSLQGVVMDKD 740

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE-----IVKE 983
               R+ ++S K   I   ++A+ +         ++   +  +H  V +I +         
Sbjct: 741  VKTRVFNMSCKKSLI---KDASKDILPLTFVDIKDKDPNTPMHGYVKSISDRGIFVAFTG 797

Query: 984  NYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 1043
             ++ L LP Y       +    +   F  K+F   QSV  TV  L +     R LL    
Sbjct: 798  KFVGLVLPSY-------ATESRDVDIF--KKFYINQSV--TVYLLRTDEENERFLL---T 843

Query: 1044 ISETETSSSKR---------------AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 1088
            +S  +TS+ K                 K  S Y VG++ +A +  +K  +L +      H
Sbjct: 844  MSPPQTSNKKEDSNHDVAAVNPVDASVKIISQYSVGTVTKARVKSVKKTQLNVVLADNLH 903

Query: 1089 GRIHITEVNDDKSNVVENL---FSNFKIGQTVTARII----AKSNK--PDMKKS---FLW 1136
            GR+  +E+ D    + EN     + FK G  +  ++I    +K++K  P   ++    + 
Sbjct: 904  GRVDASEIYDTFEEI-ENPKEPLAKFKSGDVIDVKVIGFHDSKTHKFLPISHRTGVNTVL 962

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
            ELS K S L     G+    E   +  G  + G+V      +  LT+S  LKA++   + 
Sbjct: 963  ELSAKKSALK----GAYQPIEFSGMKNGDELIGFVNNFAKGFIWLTLSPALKAKIPDFEL 1018

Query: 1197 AYEPSELQ-EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            + + S         F +G A+   V  ++   K++ +  R           DI +     
Sbjct: 1019 SDDGSVFTGNLDESFPLGCALKVKVKELDPAHKIVSVSARKHA------ITDIKD----- 1067

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE--GQFVK 1313
             I   D +  RI K+      L++ +G  L G    T+  N       S Y++  G  + 
Sbjct: 1068 -IKVADKLPARIVKVADSY--LLLDLGNRLTGVAFVTDALNEFSLSLRSVYEDKIGSMIL 1124

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
              V+ +    +    + LSLR+                 D   +++   +DL    +V+G
Sbjct: 1125 ASVVGVDVENK---KINLSLRTE----------------DATDRYILSHKDLKQGDVVRG 1165

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
            ++K+VT KG F+ LSR L A V +S L+D Y++  +K +   + + G+V++ E  S R+ 
Sbjct: 1166 FIKSVTDKGIFVYLSRTLQAFVPVSKLTDAYIKEWKKFYKTMQPITGKVVNCESDS-RIL 1224

Query: 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELS 1492
            +T+K S+        + + ++L  GDI  G +K V  +G+F+ + NT N+ GL H SE+S
Sbjct: 1225 LTMKESEV-NGELKILKSYADLKSGDIFDGSVKNVTDFGVFVKLHNTLNVTGLAHKSEIS 1283

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1552
            +  +D++  ++  G+KVK  ILK + EK ++SLG+K+SYF+   D+     E E  E+IE
Sbjct: 1284 DSKIDDLSLLFGEGDKVKAIILKTNPEKNQVSLGLKASYFQKAHDD---EDEAEPAESIE 1340

Query: 1553 EVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGI 1612
            E      +    +   A++D++ E             + A  P  E +    +  +  G+
Sbjct: 1341 EANGEEINGEASDEDEAMEDIEYE------------HTPADAPSHETSSKAHKEAVPTGL 1388

Query: 1613 SQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIR--------AAEERLLEKD--APRTPD 1662
            S + G    A  +D+    + +  E E+   +          A  +R ++ +  AP +  
Sbjct: 1389 SLSAGFDWTASILDQNREDNEESSEDEDFTSKKAKKNKKRHAAVIDRTVDINTKAPESVG 1448

Query: 1663 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1722
            +FERL+  +PNSS +W+ YMAF L +++VEKAR +AERAL+TI+ REE+EKLNIW+A  N
Sbjct: 1449 DFERLIMGNPNSSVIWMNYMAFQLQLSEVEKARELAERALKTISFREEHEKLNIWIAMLN 1508

Query: 1723 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KH 1781
            LEN +G   +E +  VF+RA QY D   +H+ L+ +Y  + ++  A EL     KKF   
Sbjct: 1509 LENTFGT--DETLEDVFRRACQYMDAYTIHMKLISIYAMSSKDDKAVELYKAAAKKFGSE 1566

Query: 1782 SCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
            +  +W+   + LL  +Q +  +AV+ +AL SLPR  HI  + + A LEF  G  ++GR++
Sbjct: 1567 NVSLWVSWGEFLLTHEQPDEARAVLAQALKSLPRRSHIDVVRKFAQLEFAKGDPEQGRAL 1626

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900
            FEG+L++ PKR D+W++YLDQEI+  +      LFER +   L  K+ KF F K+L+  +
Sbjct: 1627 FEGLLADAPKRIDIWNVYLDQEIKSSNRARADALFERVLVAKLSRKQAKFFFNKWLQLAE 1686

Query: 1901 SVGEEERIEYVKQKAMEYV 1919
            S  ++  +EY+K +A +YV
Sbjct: 1687 STDDQRGVEYIKARAADYV 1705



 Score =  171 bits (434), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 303/1360 (22%), Positives = 567/1360 (41%), Gaps = 187/1360 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
            FPRGG  +LT  E  ++  E   D  F           +   K  E +  +      +  
Sbjct: 39   FPRGGASALTPLELKQVANEAASDVLF----------GRDDGKPAEERPRKKKKTSKASK 88

Query: 112  GDGISGKLPR--YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP 169
             D ++GK  R      ++ K +++G  L G +  VN  DL I L  GLRG     +   P
Sbjct: 89   EDAVAGKEDRTDIVEHLSFKGLTSGTVLLGQLCGVNRTDLCIALTDGLRGYVPLTNISAP 148

Query: 170  I------LDNEIEANEDNL-----------------LPTI---FHVGQLVSCIVLQ---L 200
                   LD  +++  ++                  LP +   F +GQ + C+V++   L
Sbjct: 149  FTSLLEQLDQSMDSGSEDEDDDSDDEQRDKPHTITELPELSKYFTLGQWLRCVVVKNSAL 208

Query: 201  DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF 260
            D  KK+    +I LS+  S +      E + +   +   VKSIEDHG +L  G+   TGF
Sbjct: 209  DSQKKK--NSRIELSIEPSKV-NLFETEDLAKHTTVQCAVKSIEDHGALLDLGVQDVTGF 265

Query: 261  LPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKVVY-LSSDPDTVSKCVTKDLKGISIDL 318
            +   +L++    DV PG + L  + +  DRT  V +  ++    VS+         S+D 
Sbjct: 266  ISNKDLSKMG--DVMPGSVFLANITKRGDRTATVNFEFTAKNSKVSQIS-------SVDA 316

Query: 319  LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN---TFPTTNWKNDYNQHKKVNA 375
            ++PG  +    + I  +G++        G +D F  ++    F  T+ K+ Y     +  
Sbjct: 317  VIPGHTIDFLCEKITNHGIIGKAF----GVLDGFLSESQARVFSVTDMKHKYAIGSNIKV 372

Query: 376  RILFVDPTSRAVG----------LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGL 425
            RI+    T +             L+L   LL   A  +   VG ++D  K++  D     
Sbjct: 373  RIIATLRTKQGNKVILVSALPHILSLERNLLETEAMHA-FPVGYVFDNCKLLGRD----- 426

Query: 426  LLDIPSTPVSTPAYVTISD--VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483
                     S   YV++SD  + +  + K      +   V+ R+ G+  ++G        
Sbjct: 427  ---------SQYLYVSLSDERIGQIHISKAGDAITQ-EAVKARVTGYNTVDGYYQLTSDP 476

Query: 484  SAFEGLVFTHSDVKPGMVVKG-KVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGK 541
                      +D+  G ++ G ++ AV   G  +  F G  KA     H+S+  +V P +
Sbjct: 477  KLLAKPYLRSADIPVGTILSGCEITAVSGNGIELSLFDGQFKAFVAPLHISDIRLVYPER 536

Query: 542  KFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAE----ATDRLITHGWI 593
            KFK+G+++  RVL V +K R+ VT KK+LV    S + ++S + +    A +   T   +
Sbjct: 537  KFKIGSKVKGRVLHVDNKGRVYVTLKKSLVSANDSDIPLVSDFEQIAKLAEEDGKTLATV 596

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
               +  GC V F   ++ F P  E+             +GQ V  +++  +    ++ ++
Sbjct: 597  ESFKPSGCVVTFLGNLKAFLPNKEISEAFVQRAQDHLRLGQTVVVKVLEHVAKQSKVIVT 656

Query: 654  FMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLAD- 706
              +  +  SE     +  LV G  +VDV     T ++VVV +   G  +G I   HL+D 
Sbjct: 657  RKVS-SEDSEKQKAAINDLVVGRSIVDVTVVEKTKDSVVVELNDVGL-RGVIYVGHLSDS 714

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ--LP---SDASHI 759
             LE    +   ++ G    Q +V+D +    +  +S K SLI  A +  LP    D    
Sbjct: 715  KLEQNRALLKKLRIGSSL-QGVVMDKDVKTRVFNMSCKKSLIKDASKDILPLTFVDIKDK 773

Query: 760  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
             PN+ +HGYV +I + G FV F G+  G    S A + +  D+ K +Y+ QSV   +L  
Sbjct: 774  DPNTPMHGYVKSISDRGIFVAFTGKFVGLVLPSYATESRDVDIFKKFYINQSVTVYLLRT 833

Query: 820  NSETGR--ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
            + E  R  +T+S  Q+     D++           +A +       + +K +  + +G+V
Sbjct: 834  DEENERFLLTMSPPQTSNKKEDSN---------HDVAAVNPVD---ASVKIISQYSVGTV 881

Query: 878  IEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSVIQAAILDV 927
             + +V   +     VV++   H         D +  I + +   A  +SG VI   ++  
Sbjct: 882  TKARVKSVKKTQLNVVLADNLHGRVDASEIYDTFEEIENPKEPLAKFKSGDVIDVKVIGF 941

Query: 928  --AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENY 985
              +K  + + +S +T  ++   E ++ + A K           G +Q +     +   + 
Sbjct: 942  HDSKTHKFLPISHRT-GVNTVLELSAKKSALK-----------GAYQPIE-FSGMKNGDE 988

Query: 986  LVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045
            L+  +  +     + ++S     K P  +  +  SV    +   S      L + +K + 
Sbjct: 989  LIGFVNNFAKGFIWLTLSPALKAKIPDFELSDDGSVFTGNLD-ESFPLGCALKVKVKELD 1047

Query: 1046 ETETSSSKRAKKKSSYDVGSL-----VQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
                  S  A+K +  D+  +     + A I ++    L L  G    G   +T+  ++ 
Sbjct: 1048 PAHKIVSVSARKHAITDIKDIKVADKLPARIVKVADSYLLLDLGNRLTGVAFVTDALNEF 1107

Query: 1101 SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
            S  + +++ + KIG  + A ++      D++   +  LS++    T      + +    D
Sbjct: 1108 SLSLRSVYED-KIGSMILASVVG----VDVENKKI-NLSLRTEDAT-----DRYILSHKD 1156

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +  G  V G++  V ++   + +SR L+A  F+  S    + ++E+++ +   + +TG V
Sbjct: 1157 LKQGDVVRGFIKSVTDKGIFVYLSRTLQA--FVPVSKLTDAYIKEWKKFYKTMQPITGKV 1214

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
            ++   + ++L L ++  +     K +    D     +  GDI  G +  +     G+ V+
Sbjct: 1215 VNCESDSRIL-LTMKESEVNGELKILKSYAD-----LKSGDIFDGSVKNVTD--FGVFVK 1266

Query: 1281 IGPHL--YGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318
            +   L   G  H +E+ +  + D    + EG  VK  +L+
Sbjct: 1267 LHNTLNVTGLAHKSEISDSKIDDLSLLFGEGDKVKAIILK 1306


>gi|393218210|gb|EJD03698.1| hypothetical protein FOMMEDRAFT_139869 [Fomitiporia mediterranea
            MF3/22]
          Length = 1462

 Score =  365 bits (938), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 371/1376 (26%), Positives = 641/1376 (46%), Gaps = 187/1376 (13%)

Query: 627  SSMYHVGQVVKCRIMSSIP------------------ASRRINLSFMMKPTRVS----ED 664
            + ++  GQ V+  + S  P                  ASRR+ LS +  P +V+    + 
Sbjct: 194  TDLFQTGQYVRAVVSSVKPPGSTDGQIFSHSKDGVEKASRRVELSLI--PEQVNSGLNKS 251

Query: 665  DLVKLGSLVSGVVDVVTPNAVVVYVI--AKGYSKGTIPTEHLADHLEHATVMKSVI-KPG 721
            DL K  +L + V  V     V+   +    G+ +     +  +D     ++M +++ K G
Sbjct: 252  DLKKGHTLCAAVKSVEDHGYVLNIGLPDVSGFLRFKAQKDGSSDRRRTGSLMNTIVEKMG 311

Query: 722  YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
             +    ++ D+ES            N+ Q+  ++ S + P ++V   V +++ +G  V+ 
Sbjct: 312  DDGRTCILTDSESD---------FKNAIQKEVTNVSSVLPGTLVQALVTSVVPSGLAVQI 362

Query: 782  LGRLTG-----FAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DV-NSETGRITLSLKQSC 834
            LG   G       P S +        +  + VG+ +++ IL DV  +   R  LSLK   
Sbjct: 363  LGSFEGTIDLYHLPSSTS--------ASEFKVGKKLKARILYDVAGTSPPRFALSLK--- 411

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG-KVHE-SNDFGVVV 892
                      EH L    +   + S  +G  ++  E F +G++++  KV     + G+VV
Sbjct: 412  ----------EHVLT---LDAKKRSAESGQSVQ--ESFPVGTMLKSVKVKRVEPERGLVV 456

Query: 893  SFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLK-TV 941
              EE  D+ GF+    ++   V S          G+  QA ++     + ++ LS + +V
Sbjct: 457  GVEE--DLEGFVHISHVSDDHVPSLSSNSGPWKIGTSRQARVVGFHALDGILQLSFRPSV 514

Query: 942  FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS 1001
               +F   +                D+ V + V   V+ + E+ L +S+     ++ + +
Sbjct: 515  LSQKFLRVD----------------DVTVGELVKGTVKKLTESCLFVSINGNVDAMIWPN 558

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSY 1061
                   K PQK+F  G ++   V+ +       R  ++L A      S      K    
Sbjct: 559  HYADIMLKHPQKRFKPGGTLKCRVLVV----EPDRKRIMLTAKKTLVESDLPILSKIEDA 614

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            + G ++   I ++    L ++F       +   EV++     V NL  ++ +G+++   I
Sbjct: 615  EAGMVIHGTICKVLEKSLVVEFYNHLRAVVPAREVSE---TPVTNLAESYAVGKSLKVCI 671

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
            ++       +++     SI+ ++      G   +     V +GQ V+G V +V  +  +L
Sbjct: 672  VSVD-----REAGRIVASIRQAL------GESTIGNIKSVEVGQTVSGTVQEVHGDNVVL 720

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH---VLSINKEKKLLRLVLRPFQ 1238
             +       L  L +          Q R  I          V+S N +K ++ +  RP  
Sbjct: 721  ILEPSRARALISLHNIANRRRKTVEQLRSSITSGEKMEDLVVVSRNLDKGIVIVANRPSP 780

Query: 1239 DGISDKT--VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
               S K   +D+S       + EG  V GR+ K+  G  G VV+    + G +H      
Sbjct: 781  KASSSKQEPIDLSA------LSEGSTVVGRVVKL--GKQGAVVKFAGRVTGTLH------ 826

Query: 1297 ICVSDPLSGYDE-GQFVKCKVLEISRTV------RGTFHVELSLRSS-LDGMSSTNSSDL 1348
                 PL   D+  + +    ++ + T       +    + LS R S LD     N+ + 
Sbjct: 827  -----PLDTTDDFERLIAMPAMDSTITAAIIVIDQKAKRLTLSTRPSRLD----QNAKEK 877

Query: 1349 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1408
              D++ PG     IEDL     ++G+VKNV   G F+ + R +DA+V +  L D YV+  
Sbjct: 878  VVDLEVPG-----IEDLKVGQRLRGFVKNVAEHGVFVTIGRGIDARVQIKELYDEYVKDW 932

Query: 1409 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1468
            +  F   +LV+GR+L +    K+VE+T +++  +T  +     LS+L  G  V G++K+V
Sbjct: 933  KSGFKENQLVSGRILGINREKKQVEMTFRST--KTLPEKPEKLLSDLTEGQKVDGKVKKV 990

Query: 1469 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISL 1525
            E YG+FI+I+   L GLCH SE++++   ++      +R G+ VK  +L VD EKR ISL
Sbjct: 991  EDYGIFISIDGAKLSGLCHKSEITDNKDADVTLALRHFREGDPVKAIVLSVDTEKRHISL 1050

Query: 1526 GMKSSYF-KNDADNL--QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGS 1582
            G+K SYF K D ++    M  + E D  I+     +  S  E + V     + E      
Sbjct: 1051 GLKPSYFSKEDLESQPENMEPDAEVDGDIQMQDEVSGESDAEENKVIEDASEDEE----D 1106

Query: 1583 LVLAQIESRASVPPLEVNLDDEQ----------PDMDNGISQNQGHTDEAKTIDEKNNRH 1632
             +   ++S    PP  V    +Q          P      ++ Q    E  T    +   
Sbjct: 1107 DIEMIVDSSTFAPPTVVPDSPKQNAPLLAPVIAPQGFQWTNEQQQSDAEEATSSSSDEDS 1166

Query: 1633 AKKKEKEEREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMA 1689
                +K+ ++++ +  E+ L      RTP+   +FER + +SPNSSF+WI+YM+F L +A
Sbjct: 1167 DAPSDKKRKKKKKKTIEQDLTADMQTRTPESVADFERHLLASPNSSFLWIQYMSFQLQLA 1226

Query: 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1749
            +++KAR I +RALQ I+IREE EKLN+W+A  NLEN YG   +E++  +F+ A ++ D K
Sbjct: 1227 EIDKAREIGKRALQAISIREEQEKLNVWIALLNLENTYGT--DESLEALFRDAARHNDSK 1284

Query: 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1808
             +HL L  +++++ + + A+E   +  KKF  S KVW    +  L++ Q +  + ++ R+
Sbjct: 1285 TIHLRLANIFDQSGKPEKAEEQYKRTCKKFGQSSKVWTLFGEHYLRRGQADESRKLLPRS 1344

Query: 1809 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1868
            L SL + KH+K IS+ A LE+K G  +RG+++FEGI+  +PKR DLWSIY+D E    D+
Sbjct: 1345 LQSLEKRKHLKTISKFAQLEYKLGDPERGKTIFEGIVDSHPKRWDLWSIYVDMEAGQKDI 1404

Query: 1869 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
              +R LFER  S  +   K K  FKK+LE E+ +G+EE    VK+KA+E+ + T A
Sbjct: 1405 QSVRNLFERVFSHKMTSHKAKSFFKKWLELERRIGDEEGQRIVKEKAIEWTQRTAA 1460



 Score =  230 bits (587), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 239/887 (26%), Positives = 392/887 (44%), Gaps = 86/887 (9%)

Query: 12  SSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALP----PDDDVPVFPRGGGHSLTQRER 67
           S K G + N +S  Q +  + + +D  E      P    P++    FPRGGG S T  E 
Sbjct: 3   SKKRGSEPNSSSSVQRQRKRIKTSDPTEDVKTQTPSVLRPEE--VDFPRGGGTSFTPVEY 60

Query: 68  DEIHAEVDAEF-------EAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLP 120
             I AE   E        ++  +    K  K+ K   R A +   ++      G+     
Sbjct: 61  KAIRAEAIKELNDEDVFGDSAAQNKPSKKAKRVKSASRSAKKLSTEVHKPKSSGV----- 115

Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------------LARAA 164
                +  K I  GMKL G +  V    L++ LP  L G                 A A 
Sbjct: 116 -RVEHLNYKRIVPGMKLLGQIVAVYPFSLIVSLPDQLLGHVPITHISSELTSALEAADAD 174

Query: 165 DALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQL-------------DDDKKEIGKRK 211
           D  +   ++E  A +   L  +F  GQ V  +V  +               D  E   R+
Sbjct: 175 DVSEEGSESEGHAKDPPDLTDLFQTGQYVRAVVSSVKPPGSTDGQIFSHSKDGVEKASRR 234

Query: 212 IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSG 271
           + LSL    +  GL+   +++G  L A VKS+EDHGY+L+ GLP  +GFL      + S 
Sbjct: 235 VELSLIPEQVNSGLNKSDLKKGHTLCAAVKSVEDHGYVLNIGLPDVSGFLRFKAQKDGSS 294

Query: 272 IDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 331
              + G L+  +V  +    +   L+         + K++  +S   ++PG +V   V S
Sbjct: 295 DRRRTGSLMNTIVEKMGDDGRTCILTDSESDFKNAIQKEVTNVSS--VLPGTLVQALVTS 352

Query: 332 ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDPTSRA-VGL 389
           ++ +G+ +  L  F GT+D++HL    P++   +++   KK+ ARIL+ V  TS     L
Sbjct: 353 VVPSGLAVQILGSFEGTIDLYHL----PSSTSASEFKVGKKLKARILYDVAGTSPPRFAL 408

Query: 390 TLNPYLL----HNRAPPS------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
           +L  ++L      R+  S         VG +    KV RV+   GL++ +         +
Sbjct: 409 SLKEHVLTLDAKKRSAESGQSVQESFPVGTMLKSVKVKRVEPERGLVVGVEE---DLEGF 465

Query: 440 VTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDV 496
           V IS V+++ V  L      +K G+  + R++GF  L+G+     + S          DV
Sbjct: 466 VHISHVSDDHVPSLSSNSGPWKIGTSRQARVVGFHALDGILQLSFRPSVLSQKFLRVDDV 525

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
             G +VKG V  +      V   G V A+    H ++  +  P K+FK G  L  RVL V
Sbjct: 526 TVGELVKGTVKKLTESCLFVSINGNVDAMIWPNHYADIMLKHPQKRFKPGGTLKCRVLVV 585

Query: 557 KS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
           +   KRI +T KKTLV+S L ILS   +A   ++ HG I K+ +    V FYN ++   P
Sbjct: 586 EPDRKRIMLTAKKTLVESDLPILSKIEDAEAGMVIHGTICKVLEKSLVVEFYNHLRAVVP 645

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVKLGSL 672
             E+   P    +  Y VG+ +K  I+S    + RI  S    +  + +     V++G  
Sbjct: 646 AREVSETPVTNLAESYAVGKSLKVCIVSVDREAGRIVASIRQALGESTIGNIKSVEVGQT 705

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVL 730
           VSG V  V  + VV+ ++    ++  I   ++A+     TV  ++S I  G + + L+V+
Sbjct: 706 VSGTVQEVHGDNVVL-ILEPSRARALISLHNIANR-RRKTVEQLRSSITSGEKMEDLVVV 763

Query: 731 D-NESSNLLLSAKYSL--INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
             N    +++ A       +S++Q P D S +   S V G V  + + G  V+F GR+TG
Sbjct: 764 SRNLDKGIVIVANRPSPKASSSKQEPIDLSALSEGSTVVGRVVKLGKQGAVVKFAGRVTG 823

Query: 788 -FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
              P     D +R  L     +  ++ + I+ ++ +  R+TLS + S
Sbjct: 824 TLHPLDTTDDFER--LIAMPAMDSTITAAIIVIDQKAKRLTLSTRPS 868



 Score = 48.1 bits (113), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 94/448 (20%), Positives = 178/448 (39%), Gaps = 86/448 (19%)

Query: 128  LKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIF 187
            +++  AGM + G + +V EK LV+     LR +  A +  +  + N  E+         +
Sbjct: 611  IEDAEAGMVIHGTICKVLEKSLVVEFYNHLRAVVPAREVSETPVTNLAES---------Y 661

Query: 188  HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL-SLETVQEGMVLTAYVKSIEDH 246
             VG+ +   ++ +D   +E G+  I  S+R +L    + ++++V+ G  ++  V+ +   
Sbjct: 662  AVGKSLKVCIVSVD---REAGR--IVASIRQALGESTIGNIKSVEVGQTVSGTVQEVHGD 716

Query: 247  GYILHFGLPSFTGFLPRNNLA-------ENSGIDVKPGLLLQGVV---RSIDRTRKVVYL 296
              +L          +  +N+A       E     +  G  ++ +V   R++D+   +V +
Sbjct: 717  NVVLILEPSRARALISLHNIANRRRKTVEQLRSSITSGEKMEDLVVVSRNLDKG--IVIV 774

Query: 297  SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV------D 350
            ++ P    K  +   + I +  L  G  V  RV  + + G ++ F    TGT+      D
Sbjct: 775  ANRPS--PKASSSKQEPIDLSALSEGSTVVGRVVKLGKQGAVVKFAGRVTGTLHPLDTTD 832

Query: 351  IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV----- 405
             F      P  +          + A I+ +D  ++ + L+  P  L   A    V     
Sbjct: 833  DFERLIAMPAMD--------STITAAIIVIDQKAKRLTLSTRPSRLDQNAKEKVVDLEVP 884

Query: 406  -----KVG--------DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
                 KVG        ++ +    V + RG+              A V I ++ +E V+ 
Sbjct: 885  GIEDLKVGQRLRGFVKNVAEHGVFVTIGRGID-------------ARVQIKELYDEYVKD 931

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAF-----EGLVFTHSDVKPGMVVKGKVI 507
             +  +KE   V  RILG    +       +++       E L+   SD+  G  V GKV 
Sbjct: 932  WKSGFKENQLVSGRILGINREKKQVEMTFRSTKTLPEKPEKLL---SDLTEGQKVDGKVK 988

Query: 508  AVDSFGAIVQFPGG-VKALCPLPHMSEF 534
             V+ +G  +   G  +  LC   H SE 
Sbjct: 989  KVEDYGIFISIDGAKLSGLC---HKSEI 1013


>gi|406602958|emb|CCH45514.1| rRNA biogenesis protein [Wickerhamomyces ciferrii]
          Length = 1724

 Score =  365 bits (936), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 382/1495 (25%), Positives = 687/1495 (45%), Gaps = 184/1495 (12%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
            PG  ++  +  V   G   +  G V +   L H+  +   +   K+ +G+ +  RV+ V 
Sbjct: 338  PGNYIETLITEVHQDGLATKTYGLVDSSINLTHLGTYSAEEIKHKYAIGSNIKARVIAV- 396

Query: 558  SKRITVTHKKTLVKSKLAILSSYAEAT----------DRLITHGWITKIEKHG-----CF 602
               I     K LV S L  + +  E            D          +E  G      +
Sbjct: 397  ---ILSNGAKKLVLSVLPHVLNLNETNYDTEVSSAPLDAFPLGHIFESVEVKGYDSNYIY 453

Query: 603  VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
            V+      G A  S      G   S  Y +G   K R++     S+  N   +    +V 
Sbjct: 454  VKIGGDRYGQAHTSRADTTAGL--SITYTIGSQHKARVLG---FSQLDNSYVLTMDPKVI 508

Query: 663  EDDLVK-----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 717
            E   +K     LG  V+G V  V+ +++ + +  +   +  +P  H++D          +
Sbjct: 509  EQKYLKAQDLPLGEKVNGEVISVSEDSMKIKIFKQ--FEAVVPAAHMSD--------VKL 558

Query: 718  IKPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGY 768
            I P  +F        +++ +   +S + ++ K SL+     +    DA      SV    
Sbjct: 559  IYPERKFKIGSKVRGRIINISKYTSEITVTLKKSLVGIENVITKIDDAKVGERTSVT--- 615

Query: 769  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
            V +   +G  V F G L  F P+S+  +           +GQ++   I  VN ET RI++
Sbjct: 616  VTSFRPSGALVSFFGNLKAFLPKSEISETFVKKPEDHLRLGQTITVRIASVNKETHRISV 675

Query: 829  SLKQSCCSSTDASFMQEHFLLEE---KIAMLQSSKHN------GSELKWVEGFIIGSVIE 879
            S + S  ++ +     E  ++     K+ +++ SK +      G+ L+       G + E
Sbjct: 676  SCRLSEETTEEQQQALEQLVVGRSILKVEIVEKSKESVIVEIPGNNLR-------GVIFE 728

Query: 880  GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
            G + + N       FE++  +             +E GS I+  +LD     RL +L+ K
Sbjct: 729  GHLSDGN-------FEQNRAIL----------KRLEVGSSIEGLVLDKDSRSRLFNLTAK 771

Query: 940  TVFIDRFREANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEYNHSIG 998
               I           AQ+ K   + S D+ +  Q +   V+ V    + ++       + 
Sbjct: 772  KSLI---------TAAQEDKLPVKFS-DISISEQLIPGYVKSVTNKGIFVAFGAKLVGLI 821

Query: 999  YASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS------ 1052
             A  +           F   QSV  +V  + +     R LL LK   E +T+S       
Sbjct: 822  LAKYATSRPVDDLSSVFHVNQSV--SVRVIRTDEEHNRFLLSLK---EKKTTSDDIVNPV 876

Query: 1053 -KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFS 1109
             +  K    +  G L +A I  +K  +L ++      GR+ ++++ +  D+    +   +
Sbjct: 877  DQTIKSAKEFVPGKLTKALIKSVKQSQLNVQLADNIQGRVDVSQIYETYDEIKNPKVPLA 936

Query: 1110 NFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
             FK G  +  ++I   +  + +         K  L ELS K S LT     + L F++  
Sbjct: 937  PFKKGDIIDVKVIGFHDARNHRFLPISHRRSKQILIELSAKKSDLTEGTTEA-LSFDK-- 993

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +++G     ++      +  L +S  +K ++  +D   + S L++    + IG A+   V
Sbjct: 994  LTVGTEWVAFINNATVGFFFLNLSPSIKGRISFMDLPGDASALKDLDGNYPIGSALKVKV 1053

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
             +++ E   + L  R  QD IS  T++         +  G +V  RI +I      ++V+
Sbjct: 1054 KAVDAENHNVLLTGR--QDSIS--TIED--------VKVGAVVPSRILRITESF--VIVE 1099

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1340
            +  ++      T+  +         +++ + +  K+L +    +    + +SLRS+    
Sbjct: 1100 LAENVTAMSFITDALDDYSKKLEDVFEKNEILPAKILSVDEHNK---KLNVSLRSN---- 1152

Query: 1341 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1400
                        D   K + K +DL    +V G+VKN++ KG FI L R +   V +S++
Sbjct: 1153 ------------DAKDKLISKSDDLKRGDVVHGFVKNISDKGLFISLGRTVTGYVKVSDV 1200

Query: 1401 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH---V 1457
            SD ++++ +K +   + V G++++ +     V +TLK S+       E+N L       +
Sbjct: 1201 SDSFIKAWKKYYKPHQQVIGKIINADT-EGNVTLTLKESEV----NGELNILKRFEDIVI 1255

Query: 1458 GDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
            GDI  G ++RV  +G+F+ ++ T N+ GLCH S+++++ V ++E ++  G++VKVK+L V
Sbjct: 1256 GDIFEGSVRRVTDFGVFVKLDGTLNISGLCHHSQIADNDVTDLEALFGEGDRVKVKVLAV 1315

Query: 1517 DKEKRRISLGMKSSYF-KNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM 1575
            D  K+++SLGMK+SYF +N  ++  +  E+ S+E +EE      +          QD + 
Sbjct: 1316 DTGKKQLSLGMKASYFIENADEDEDVDMEDASEENVEEDSDSEEAD-------DKQDSED 1368

Query: 1576 ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKK 1635
            E+E+   +  A  E  +     E   + ++     G++ N G    A  +D+ ++  +  
Sbjct: 1369 EAEEDAIVEDAFNEQDSEESSDEEEEESKEDKSITGLTTN-GFDWTASILDQVHDDESSD 1427

Query: 1636 KE--------KEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1687
            +E        K+ + +E+       L+  AP++  +FERL+  +PNSS VW+ YM+F L 
Sbjct: 1428 EEDFTDSKSKKKRKTKEVVEDTTGDLQSKAPQSVSDFERLIIGNPNSSIVWMNYMSFQLQ 1487

Query: 1688 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1747
            ++++EKAR IAERAL+TIN REE EKLNIW+A  NLEN +G   +E +   F+R+ +Y D
Sbjct: 1488 LSEIEKAREIAERALKTINYREEQEKLNIWIALLNLENTFGT--KETLEDAFKRSTEYMD 1545

Query: 1748 PKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-EGVQAVV 1805
               +H  L+ +Y  +E+   A+ L   + KKF K S  VW+     LL Q Q +    V+
Sbjct: 1546 SLVMHQKLVSIYILSEKFSKAESLFKVITKKFGKESVSVWVSYGSYLLDQNQSDKAHEVL 1605

Query: 1806 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1865
              +L SLP+  HI+ + + A LEF  G A++GR++FEG++++ PKR DLW++Y+DQEI+ 
Sbjct: 1606 ASSLNSLPKRDHIEVVRKFAQLEFTKGDAEQGRTLFEGLIADVPKRIDLWNVYIDQEIKK 1665

Query: 1866 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
             +   +  LFER +S  +  K+ KF F K+L + +  G+ +  +YVK KA EYV+
Sbjct: 1666 NENKKVSDLFERVLSRKVSRKQAKFFFGKWLSFAEKQGDTKTADYVKAKAQEYVQ 1720



 Score =  174 bits (441), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 211/850 (24%), Positives = 350/850 (41%), Gaps = 83/850 (9%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG  +LT  E  E+  E   +    +          K   +R   +      S   D
Sbjct: 41  FPRGGASALTPLELKEVANEAAGDVLFGKESSGASQPSTKSDDQRPLKKKKTSKVSKTQD 100

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDN 173
             + K       +  K++  G  + G + E+N  DL + LP  L G          I   
Sbjct: 101 S-NDKPSVKIESLNFKSLQPGTSVLGQILEINRLDLALALPDNLIGYVPITSISSSITKQ 159

Query: 174 ----------------------------------EIEANEDNLLPTIFHVGQLVSCIVLQ 199
                                               E+ E   L   F +GQ +  +V++
Sbjct: 160 LEDFEESDSEDEDEDESEDEEQDEENKTTKGTLKTKESKEFPQLSKFFKIGQWLRAVVVE 219

Query: 200 -LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 258
                KK+  K++I LS+ +    K L  + +  G  L   VKS+EDHG IL  G     
Sbjct: 220 STQKGKKKQNKKRIQLSVEIETTNKDLEDDDLVAGTTLQVSVKSVEDHGLILDTGREGLG 279

Query: 259 GFLPRNNLAENSGID---VKPG-LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 314
           GF+    L +N+  D   + PG + L  VV    RT  V   +   + V+          
Sbjct: 280 GFISNKEL-KNANYDSTAIVPGTVFLSTVVNKNARTVTVKLNTGKKNPVTTTS------- 331

Query: 315 SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
           SID +VPG  + T +  + ++G+          ++++ HL  T+     K+ Y     + 
Sbjct: 332 SIDSIVPGNYIETLITEVHQDGLATKTYGLVDSSINLTHL-GTYSAEEIKHKYAIGSNIK 390

Query: 375 ARILFVDPTSRAVGLTLN--PYLLH----------NRAPPSHVKVGDIYDQSKVVRVDRG 422
           AR++ V  ++ A  L L+  P++L+          + AP     +G I++  +V   D  
Sbjct: 391 ARVIAVILSNGAKKLVLSVLPHVLNLNETNYDTEVSSAPLDAFPLGHIFESVEVKGYDSN 450

Query: 423 LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 482
              +       +    Y        +    L   Y  GS  + R+LGF  L+      + 
Sbjct: 451 YIYV------KIGGDRYGQAHTSRADTTAGLSITYTIGSQHKARVLGFSQLDNSYVLTMD 504

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
               E       D+  G  V G+VI+V      ++     +A+ P  HMS+ +++ P +K
Sbjct: 505 PKVIEQKYLKAQDLPLGEKVNGEVISVSEDSMKIKIFKQFEAVVPAAHMSDVKLIYPERK 564

Query: 543 FKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           FK+G+++  R++ +   +  ITVT KK+LV  +  +++   +A     T   +T     G
Sbjct: 565 FKIGSKVRGRIINISKYTSEITVTLKKSLVGIE-NVITKIDDAKVGERTSVTVTSFRPSG 623

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
             V F+  ++ F P+SE+      +P     +GQ +  RI S    + RI++S  +    
Sbjct: 624 ALVSFFGNLKAFLPKSEISETFVKKPEDHLRLGQTITVRIASVNKETHRISVSCRLSE-E 682

Query: 661 VSEDDLVKLGSLVSG----VVDVVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVM 714
            +E+    L  LV G     V++V  +   V V   G + +G I   HL+D + E    +
Sbjct: 683 TTEEQQQALEQLVVGRSILKVEIVEKSKESVIVEIPGNNLRGVIFEGHLSDGNFEQNRAI 742

Query: 715 KSVIKPGYEFDQLLVLDNESSNLL--LSAKYSLINSAQQ--LPSDASHIH-PNSVVHGYV 769
              ++ G   +  LVLD +S + L  L+AK SLI +AQ+  LP   S I     ++ GYV
Sbjct: 743 LKRLEVGSSIEG-LVLDKDSRSRLFNLTAKKSLITAAQEDKLPVKFSDISISEQLIPGYV 801

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            ++   G FV F  +L G      A      DLS  ++V QSV   ++  + E  R  LS
Sbjct: 802 KSVTNKGIFVAFGAKLVGLILAKYATSRPVDDLSSVFHVNQSVSVRVIRTDEEHNRFLLS 861

Query: 830 LKQSCCSSTD 839
           LK+   +S D
Sbjct: 862 LKEKKTTSDD 871



 Score = 45.4 bits (106), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 121/304 (39%), Gaps = 50/304 (16%)

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMV----STRVQSI 332
            G  L+  V+++D     V L+   D++S      ++ + +  +VP  ++    S  +  +
Sbjct: 1046 GSALKVKVKAVDAENHNVLLTGRQDSIST-----IEDVKVGAVVPSRILRITESFVIVEL 1100

Query: 333  LENGVMLSFLT-----YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAV 387
             EN   +SF+T     Y     D+F      P               A+IL VD  ++  
Sbjct: 1101 AENVTAMSFITDALDDYSKKLEDVFEKNEILP---------------AKILSVDEHNKK- 1144

Query: 388  GLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVT 441
               LN  L  N A    +   D   +  VV        D+GL + L    T      YV 
Sbjct: 1145 ---LNVSLRSNDAKDKLISKSDDLKRGDVVHGFVKNISDKGLFISLGRTVT-----GYVK 1196

Query: 442  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKP 498
            +SDV++  ++  +K YK    V  +I+     EG  T  LK S   G   ++    D+  
Sbjct: 1197 VSDVSDSFIKAWKKYYKPHQQVIGKIIN-ADTEGNVTLTLKESEVNGELNILKRFEDIVI 1255

Query: 499  GMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            G + +G V  V  FG  V+  G   +  LC    +++ ++      F  G  +  +VL V
Sbjct: 1256 GDIFEGSVRRVTDFGVFVKLDGTLNISGLCHHSQIADNDVTDLEALFGEGDRVKVKVLAV 1315

Query: 557  KSKR 560
             + +
Sbjct: 1316 DTGK 1319


>gi|403417509|emb|CCM04209.1| predicted protein [Fibroporia radiculosa]
          Length = 1465

 Score =  361 bits (927), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 336/1233 (27%), Positives = 590/1233 (47%), Gaps = 144/1233 (11%)

Query: 744  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
            SL+ ++    ++AS I P + V   V  ++  G  ++ +G   G   +   + G      
Sbjct: 323  SLMTASLSEVTNASSILPGTQVQSLVTAVLPDGLNLQIMGYFGGTIDQFHLLPGHP---E 379

Query: 804  KTYYVGQSVRSNIL-DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
            + Y +GQ +++ +L  + +   +  LSL                 + ++   M     HN
Sbjct: 380  RNYKMGQKLKARVLYAITATPPKFALSLASHVLK----------LVPKDTAGMDDGLNHN 429

Query: 863  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES------ 916
              E+ +  G I+ +V   +V   ++ G+VV  E  S V GF+     +   V +      
Sbjct: 430  LDEI-YPTGSILDAVKVIRVE--SERGLVV--EVASGVEGFVHISHTSDEHVPTLSSSSG 484

Query: 917  ----GSVIQAAILDVAKAERLVDLSLK-TVFIDRFREANSNRQAQ----KKKRKREASKD 967
                G+V +A +      + L+ LSL+ +V   +F +    +  +      KR  +++  
Sbjct: 485  PWKVGTVHRARVTGHFHFDGLLQLSLRPSVLEQKFLQVGEVQVGEVLKGAVKRLTDSAMF 544

Query: 968  LGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 1027
            + +  +V+ ++            P  NH   YA +      K PQ++F  G S+   V+ 
Sbjct: 545  VSISGSVDGVI-----------WP--NH---YADIQ----LKQPQRRFKPGGSIKCRVLV 584

Query: 1028 LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 1087
            + +     R  ++L A      S+     K     VG +  A +       L+++F    
Sbjct: 585  VDTQ----RQRIVLTAKKTLLESALPIISKFEDARVGLVTHAVVFRASDKSLQVEF---- 636

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML-T 1146
            +  +       + S     L + F IG+ V  RI+  S  P+  +         P+ L +
Sbjct: 637  YNNVKAVVPAGEASETAVGLSTAFPIGKPVQVRIM--SIDPETSRIVASIRQTAPNYLAS 694

Query: 1147 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1206
            +  I S        + IG  V G + +V NE A++T+       +  L++      +   
Sbjct: 695  IENIAS--------IGIGDTVEGDITEVQNEKAIVTLRPSQVRTVISLNNLANRRGVSVA 746

Query: 1207 QRR--FHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
            Q R    +G+ +   V+ S N E+  +R+  +P +     + + +    +Q     G IV
Sbjct: 747  QLRASLQVGEKLQDLVVVSRNPERGFVRIATKPKEKITLAQKIPLDLATIQI----GQIV 802

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD---PLSGYDEGQFVKCKVLEIS 1320
             GR+  +  G  G +V++   + G +H T++ +   S    P + Y     +K  V+ + 
Sbjct: 803  QGRV--LHHGRRGALVKLTNTVSGTLHPTDVDDDFESGKAFPPADY----ILKAVVIAVD 856

Query: 1321 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLSPNMIVQGYVKNV 1378
            +  R     +L+L        ST  S L    D P     +  I DL     ++G++K V
Sbjct: 857  KDRR-----QLTL--------STRPSRLQPRRDEPVIDPEIASIGDLKEGETIRGFIKQV 903

Query: 1379 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
               G F+ L R++DA+V +  L D YV+  +  F   +LV GR+L V+   K+VE+T ++
Sbjct: 904  AEHGIFVTLGREIDARVQIKELFDEYVKDWKSRFVAHQLVRGRILRVDIAKKQVEMTFRS 963

Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
             D +T S +    L++L  G  V G IKR E YGLFI IE + L GLCH SELS++   N
Sbjct: 964  GDLKTNSLT----LADLSEGQKVDGCIKRTEEYGLFIQIEGSKLTGLCHKSELSDNKDAN 1019

Query: 1499 IETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEE---------- 1545
            +      +R G++VK  IL +D+EKRRISLG+K SYF +D  + Q +++           
Sbjct: 1020 VTLALRSFREGDQVKAIILSIDEEKRRISLGLKPSYFVDD--DFQSNNDVDDENEESSEE 1077

Query: 1546 -------ESDEAIEEVGSY--NRSSLLENSSVAVQDMDM----ESEDGGSLVLAQIESRA 1592
                   E  +  ++  S+  N+  +  +      ++DM    +++   S      E   
Sbjct: 1078 DNLLGIVEGSQGDDDSRSHQDNQDDMDADVIDDSMNIDMSIQLDADQSPSDDRTDKELHI 1137

Query: 1593 SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERL 1652
            SVP L +     Q  + + +  +      ++  D ++++  +K++++E EQ++ A     
Sbjct: 1138 SVPSLNLQ-QGFQWSVASNVEVDDDMQPSSEDEDVEDSQQKRKRKRKEIEQDLTAD---- 1192

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            +    P +  +FER++  SPNSS++WI+YM+F L +++V+KAR IA+RAL+TIN REE E
Sbjct: 1193 MHTKVPESNTDFERVLLGSPNSSYLWIQYMSFQLQISEVDKAREIAKRALRTINFREEQE 1252

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            K+NIW+A  NLEN YG   EE +   F+ A ++ D + +HL L  + +++ +   A+E  
Sbjct: 1253 KMNIWIALLNLENTYGT--EETLETTFRDAARHNDSETIHLRLASILDQSGKTDRAEEQY 1310

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
             +  KKF  S  VW    +  L+  + E  + ++ R+L SL +H H+K IS+ A LE+K 
Sbjct: 1311 QRTCKKFGQSSDVWTLCGEHYLRHGKLEEARKLLPRSLQSLEKHDHLKTISKFAQLEYKL 1370

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1891
            G  +RG+++FEGI+  + KR D+WSIY+D E   GD+  +R +F+R +++ +   K K  
Sbjct: 1371 GDPERGKTLFEGIVDSHSKRWDMWSIYIDMEAGQGDMMSLRNIFDRVLAIKMTSHKAKSF 1430

Query: 1892 FKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            FKK+LE E+ +G+EE    VK KA+E+ +   A
Sbjct: 1431 FKKWLELERRMGDEEGASAVKAKAVEWTQRASA 1463



 Score =  203 bits (516), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 215/847 (25%), Positives = 369/847 (43%), Gaps = 93/847 (10%)

Query: 8   SQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRER 67
           S+K+   D P   ++ K + +++ K+     +    A+P + D   FPRGGG S T  E 
Sbjct: 4   SKKRVLDDAPGNPRSKKTRTESTDKKGKSKADVSLPAIPEEVD---FPRGGGTSFTPLEV 60

Query: 68  DEIHAEV--DAEFEAVERGLHKKNKKKKK--KTERKANETVDDLGSLFGDGISGKLPRYA 123
             I AE   +A+ E  E    K+ ++K    K E +A++          D  S K+    
Sbjct: 61  KAIRAEAVKEADKELFEDKPTKRKRRKSDIDKAEHRASK----------DEKSEKI--RV 108

Query: 124 NKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE- 179
             +  K ++ GMK+ G V  V    L+I LP  L     +   +  L  +L+   E ++ 
Sbjct: 109 EHLNYKRVTVGMKILGQVVSVESLALIISLPNQLFAHVPITEISTQLTALLEEMGEVDDA 168

Query: 180 -------------DNLLPTIF-------HVGQLVSCIVLQLDDDKKEIGK---------R 210
                         + +P +F       +V  +VS I L    D   +G+         R
Sbjct: 169 SSSDEEEGSGTGASSSIPELFQMFRPGSYVRAIVSAIHLPGATDTTPLGRIRDEAHKASR 228

Query: 211 KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS 270
           +I LSL    +  G+S   ++ G  ++A VKS EDHGYIL  G+    GFL   +  +  
Sbjct: 229 RIELSLVPEKVNAGVSKADLRAGFTMSAAVKSKEDHGYILDLGVSDINGFLSFKDAKQGP 288

Query: 271 GID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVST 327
             +   ++ G LL   +       +    S +  ++      ++   S   ++PG  V +
Sbjct: 289 FENPERIRVGHLLDISISKTTANGRTCTCSVNASSLMTASLSEVTNASS--ILPGTQVQS 346

Query: 328 RVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDPTSRA 386
            V ++L +G+ L  + YF GT+D FHL    P  N    Y   +K+ AR+L+ +  T   
Sbjct: 347 LVTAVLPDGLNLQIMGYFGGTIDQFHLLPGHPERN----YKMGQKLKARVLYAITATPPK 402

Query: 387 VGLTLNPYLLH-------------NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
             L+L  ++L              N         G I D  KV+RV+   GL++++ S  
Sbjct: 403 FALSLASHVLKLVPKDTAGMDDGLNHNLDEIYPTGSILDAVKVIRVESERGLVVEVAS-- 460

Query: 434 VSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
                +V IS  ++E V  L      +K G+  R R+ G  H +GL    L+ S  E   
Sbjct: 461 -GVEGFVHISHTSDEHVPTLSSSSGPWKVGTVHRARVTGHFHFDGLLQLSLRPSVLEQKF 519

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
               +V+ G V+KG V  +      V   G V  +    H ++ ++ +P ++FK G  + 
Sbjct: 520 LQVGEVQVGEVLKGAVKRLTDSAMFVSISGSVDGVIWPNHYADIQLKQPQRRFKPGGSIK 579

Query: 551 FRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            RVL V +  +RI +T KKTL++S L I+S + +A   L+TH  + +       V FYN 
Sbjct: 580 CRVLVVDTQRQRIVLTAKKTLLESALPIISKFEDARVGLVTHAVVFRASDKSLQVEFYNN 639

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDD-- 665
           V+   P  E   +     S+ + +G+ V+ RIMS  P + RI  S     P  ++  +  
Sbjct: 640 VKAVVPAGEAS-ETAVGLSTAFPIGKPVQVRIMSIDPETSRIVASIRQTAPNYLASIENI 698

Query: 666 -LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYE 723
             + +G  V G +  V  N   +  +     +  I   +LA+    +   +++ ++ G +
Sbjct: 699 ASIGIGDTVEGDITEVQ-NEKAIVTLRPSQVRTVISLNNLANRRGVSVAQLRASLQVGEK 757

Query: 724 FDQLLVL--DNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
              L+V+  + E   + ++ K    I  AQ++P D + I    +V G V +    G  V+
Sbjct: 758 LQDLVVVSRNPERGFVRIATKPKEKITLAQKIPLDLATIQIGQIVQGRVLHHGRRGALVK 817

Query: 781 FLGRLTG 787
               ++G
Sbjct: 818 LTNTVSG 824



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 186/817 (22%), Positives = 324/817 (39%), Gaps = 141/817 (17%)

Query: 477  ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ----FPGGVKALCPLPHMS 532
            A+ ++ AS  E  V   S + PG  V+  V AV   G  +Q    F G +     LP   
Sbjct: 321  ASSLMTASLSE--VTNASSILPGTQVQSLVTAVLPDGLNLQIMGYFGGTIDQFHLLPG-- 376

Query: 533  EFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLIT 589
                  P + +K+G +L  RVL      IT T  K   +L    L ++       D  + 
Sbjct: 377  -----HPERNYKMGQKLKARVLYA----ITATPPKFALSLASHVLKLVPKDTAGMDDGLN 427

Query: 590  HGW--------------ITKIE-KHGCFVRFYNGVQGFAPRSELGLD--PGCEPSS-MYH 631
            H                + ++E + G  V   +GV+GF   S    +  P    SS  + 
Sbjct: 428  HNLDEIYPTGSILDAVKVIRVESERGLVVEVASGVEGFVHISHTSDEHVPTLSSSSGPWK 487

Query: 632  VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVV 687
            VG V + R+         + LS  ++P+ + +  L    V++G ++ G V  +T +A+ V
Sbjct: 488  VGTVHRARVTGHFHFDGLLQLS--LRPSVLEQKFLQVGEVQVGEVLKGAVKRLTDSAMFV 545

Query: 688  YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 745
             +   G   G I   H AD  L+     +   KPG     ++LV+D +   ++L+AK +L
Sbjct: 546  SI--SGSVDGVIWPNHYADIQLKQP---QRRFKPGGSIKCRVLVVDTQRQRIVLTAKKTL 600

Query: 746  INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
            + SA  + S         V H  V    +    V F   +    P  +A +     LS  
Sbjct: 601  LESALPIISKFEDARVGLVTHAVVFRASDKSLQVEFYNNVKAVVPAGEASETA-VGLSTA 659

Query: 806  YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
            + +G+ V+  I+ ++ ET RI  S++Q+  +         +    E IA +         
Sbjct: 660  FPIGKPVQVRIMSIDPETSRIVASIRQTAPN---------YLASIENIASIG-------- 702

Query: 866  LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAIL 925
                    IG  +EG + E  +   +V+    S V   I+ + LA     S + ++A++ 
Sbjct: 703  --------IGDTVEGDITEVQNEKAIVTLRP-SQVRTVISLNNLANRRGVSVAQLRASL- 752

Query: 926  DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIV---- 981
                 E+L DL    V + R  E    R A K K K   ++ + +      I +IV    
Sbjct: 753  --QVGEKLQDL----VVVSRNPERGFVRIATKPKEKITLAQKIPLDLATIQIGQIVQGRV 806

Query: 982  ----KENYLVLSLPEYNHSIGYASVSD--YNTQKFPQKQFLNGQSVIA--------TVMA 1027
                +   LV      + ++    V D   + + FP   ++    VIA        T+  
Sbjct: 807  LHHGRRGALVKLTNTVSGTLHPTDVDDDFESGKAFPPADYILKAVVIAVDKDRRQLTLST 866

Query: 1028 LPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 1087
             PS     R     + + + E +S    K+      G  ++  I ++    + +  G   
Sbjct: 867  RPSRLQPRR----DEPVIDPEIASIGDLKE------GETIRGFIKQVAEHGIFVTLGREI 916

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV 1147
              R+ I E+ D+    V++  S F   Q V  RI+    + D+ K  + E++ +   L  
Sbjct: 917  DARVQIKELFDE---YVKDWKSRFVAHQLVRGRIL----RVDIAKKQV-EMTFRSGDLKT 968

Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ 1207
            + +         D+S GQ+V G + + + E+ L      ++ +   L      SEL + +
Sbjct: 969  NSLTL------ADLSEGQKVDGCIKRTE-EYGLF-----IQIEGSKLTGLCHKSELSDNK 1016

Query: 1208 --------RRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
                    R F  G  V   +LSI++EK+ + L L+P
Sbjct: 1017 DANVTLALRSFREGDQVKAIILSIDEEKRRISLGLKP 1053



 Score = 43.9 bits (102), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 121/278 (43%), Gaps = 37/278 (13%)

Query: 209  KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG--------LPSFTGF 260
            K KI L+ ++ L      L T+Q G ++          G +LH G          + +G 
Sbjct: 780  KEKITLAQKIPL-----DLATIQIGQIV---------QGRVLHHGRRGALVKLTNTVSGT 825

Query: 261  LPRNNLAEN--SGIDVKPG-LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK---DLKGI 314
            L   ++ ++  SG    P   +L+ VV ++D+ R+ + LS+ P  +     +   D +  
Sbjct: 826  LHPTDVDDDFESGKAFPPADYILKAVVIAVDKDRRQLTLSTRPSRLQPRRDEPVIDPEIA 885

Query: 315  SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN 374
            SI  L  G  +   ++ + E+G+ ++        V I  L + +   +WK+ +  H+ V 
Sbjct: 886  SIGDLKEGETIRGFIKQVAEHGIFVTLGREIDARVQIKELFDEY-VKDWKSRFVAHQLVR 944

Query: 375  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKV---VRVDRGLGLLLDIPS 431
             RIL VD   + V +T     L   +    + + D+ +  KV   ++     GL + I  
Sbjct: 945  GRILRVDIAKKQVEMTFRSGDLKTNS----LTLADLSEGQKVDGCIKRTEEYGLFIQIEG 1000

Query: 432  TPVSTPAYVT-ISDVAEEEVRKLEKKYKEGSCVRVRIL 468
            + ++   + + +SD  +  V    + ++EG  V+  IL
Sbjct: 1001 SKLTGLCHKSELSDNKDANVTLALRSFREGDQVKAIIL 1038


>gi|302424003|ref|XP_003009828.1| rRNA biogenesis protein RRP5 [Verticillium albo-atrum VaMs.102]
 gi|261361662|gb|EEY24090.1| rRNA biogenesis protein RRP5 [Verticillium albo-atrum VaMs.102]
          Length = 1789

 Score =  356 bits (914), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 331/1261 (26%), Positives = 593/1261 (47%), Gaps = 168/1261 (13%)

Query: 737  LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            + L+ K +L+NS   +      +       G + +I   G  + F   + G+ P S+  +
Sbjct: 611  MRLTLKKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSE 670

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
                D  + + VGQ V  +IL+V+ E  ++ +S K               F L+++ A+ 
Sbjct: 671  AFIQDPKEHFKVGQVVNVHILEVDPENQKLLVSCKDPSA-----------FGLDKQAAL- 718

Query: 857  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
                         +   +GS++ GKV + +D  V V  +  S++   +   QL   T +S
Sbjct: 719  -------------KALSVGSIVSGKVIQKSDDDVHVELD-GSNLKAILPLGQL---TDKS 761

Query: 917  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA---QKKKRKREASK------- 966
             +  Q+A+  +   + L DL    + +D+    N  R+A     K    EA K       
Sbjct: 762  ANKSQSALKRIHMGQTLTDL----LVLDK----NERRRAITLSSKPSLVEAGKTDKLIRT 813

Query: 967  --DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQKQFLNGQSV 1021
              D  V   V   +  ++   +++        + + +   V D   + F  ++    QS+
Sbjct: 814  YADAKVGAEVPGFISSIRPGAVLVRFGGNLVGVMFKTRLPVEDQEKEGFGLRK---DQSI 870

Query: 1022 IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS---------YDV--GSLVQAE 1070
               + A+    T    L++    +E  ++  K  K+K S          D+  G +V+A+
Sbjct: 871  TVRIRAIDLERTR---LVVDPLTAELPSNEVKPKKEKESARPQAHGPVQDITFGQIVEAK 927

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARIIAKSNKP 1128
            I  I   +L ++      GR+ I+++ D  DK    E   S FK G TV  R I   +  
Sbjct: 928  IVGIHDTQLNVETADKVQGRVDISQIFDSWDKIKDPEEPLSQFKKGDTVRVRAIGLHDSK 987

Query: 1129 DMK------KSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
            D +      +S+  + E + K S +  +++   L  E  D+ +G     +V         
Sbjct: 988  DHRFLAFSHRSYNSVLEFTAKASDIE-ADVLKPLSLE--DLEVGSTHVAFVNNASRNGLW 1044

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
              IS  ++ ++  +D + + S++ +    F IG A+   V++++ ++ +L L  R     
Sbjct: 1045 ANISPVVRGRINAMDVSDDTSKINDVINNFPIGTALKVRVIAVDAKRGVLDLSAR----- 1099

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
             SD +  ++ D+    I    ++ G + K+      ++V++G ++ G VH  ++ +    
Sbjct: 1100 -SDSSAAVTWDS----IKPNQVLAGCVVKV--NERQIMVKLGSNVAGHVHLVDMSDDFGD 1152

Query: 1301 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1360
                 YDEG  ++  V+E+ ++ +    V LS R S       NSS   TD       + 
Sbjct: 1153 VNTLKYDEGDAIQVSVVEVDKSNK---RVRLSTRPS----RVLNSSSPITD-----SEIT 1200

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
             ++ +     V+G+VK+V  KG F++L   + A V +SNLSD +++  ++ F + +LV G
Sbjct: 1201 SVKQVVSGSTVRGFVKHVADKGVFVLLGGSVSALVKISNLSDRFLKEWKEHFQVDQLVKG 1260

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
            RVLSV+  + +VE++LK+S     +   +    ++    IV G+I++VE +G FI ++ +
Sbjct: 1261 RVLSVDEGAGQVELSLKSS-VVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGS 1319

Query: 1481 -NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1539
             N+ GLCH SE+++  V++   +Y+AG+ VK K+L +D+ K+RIS G+K +YF  D D  
Sbjct: 1320 DNVSGLCHRSEMADSPVEDARKLYQAGDVVKAKVLTLDRNKKRISFGLKPAYFDEDVD-- 1377

Query: 1540 QMSSEE-----------------------ESDEAIEEVGSYNRSSLLENSSVAVQDMDME 1576
             M   E                       E   +I+ +G+ N     +    A  D D++
Sbjct: 1378 -MDEGEGAGLDSDNEDEEDVDSDEGEDLAEGGASIKFMGTDNLEDSDDEQDHADSDSDVD 1436

Query: 1577 SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHT-----DEAKTIDEKNNR 1631
             EDG                 +V++  EQ  + NG     G        E ++   K++ 
Sbjct: 1437 -EDG-----------------DVDMSMEQNGLSNGKYDWDGDAFDDSDKETRSAPAKSSA 1478

Query: 1632 HAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADV 1691
              +K+ K+ +  EI+      L+ + P+T  ++ERL+   P+SS +WI YMA  + ++++
Sbjct: 1479 SKQKETKKPKTDEIQVDRTVALDANGPQTASDYERLLLGQPDSSALWIAYMALQMRVSEL 1538

Query: 1692 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1751
             KAR IAERA++TINIRE+ EKLN+W+AY NLE  YG   +  V +VFQRA QY D +++
Sbjct: 1539 TKAREIAERAIKTINIREQTEKLNVWIAYLNLEVAYGT--KTTVEEVFQRACQYNDDQEI 1596

Query: 1752 HLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLK--QQQEGVQAVVQRA 1808
            H  L  +Y ++ ++K ADEL    + KF   +  +W      L     Q +  +A++ RA
Sbjct: 1597 HERLATIYIQSGKHKKADELFQATVAKFGSKNPNLWTNYAHFLHATLNQPDRARALLPRA 1656

Query: 1809 LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL- 1865
              +L        +++   LEF+  NG A+RGR+ FE +L+ +PKR DLW+  +D E+   
Sbjct: 1657 TQALGEQHTAALMAKFGSLEFRSPNGDAERGRTTFETLLATWPKRFDLWNQLVDLEMAAP 1716

Query: 1866 -GDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
              D   +R +FER   +  L  ++    FK++ E+E     + + E V  KA E+V +  
Sbjct: 1717 GADATAVRDVFERGTKVKGLKAQRAMKWFKRWAEWEGKTDPKGK-ERVMAKAAEWVTAAK 1775

Query: 1924 A 1924
            A
Sbjct: 1776 A 1776



 Score =  207 bits (526), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 335/1366 (24%), Positives = 576/1366 (42%), Gaps = 164/1366 (12%)

Query: 49   DDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLG 108
            D+ P+FPRGGG  LT  E+ +I  E  A+ +A+  G     +K K K E++    +    
Sbjct: 64   DEEPMFPRGGGSVLTPLEQKQIQLE--AKADALREGEFDTEEKTKHKKEKRRKSKLGAFE 121

Query: 109  SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                   S +       +  K ++ G  + G V+ ++  ++ I LP  L G    A A+ 
Sbjct: 122  DTKKKSSSDEDGTKIEALNYKRLAKGSVVLGQVSAISHHNITIALPNNLSGNVSIA-AIS 180

Query: 169  PILDNEIEANEDNL----------------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKI 212
             ++  +I+   +                  L ++F VGQ V   VL   + +    K  I
Sbjct: 181  NVVTAKIQQAAEASDDDDSADENDDDDDIELNSLFEVGQYVRAYVLSTKEGEGSGKKNHI 240

Query: 213  WLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL-AEN 269
             LSLR      G+S   V     + A V S++DHGY +  G+ +    GFLP+ ++ +E 
Sbjct: 241  ELSLRPEDANSGMSKNDVVANATVMAAVTSVQDHGYEMELGVDNKKLKGFLPKKDVGSEV 300

Query: 270  SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRV 329
              + ++PG +   +V+S+  + K+  L  D + + K      +  +++   PG +V   V
Sbjct: 301  DELRLQPGAVSLCLVKSV--SGKIAQLCLDSEKLGKADNIATEATTVNTFQPGTVVDVLV 358

Query: 330  QSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AV 387
             S    G++   L +   T D+ H        +    Y    +V AR++   P ++   +
Sbjct: 359  TSTTGRGLLGKILGHLPVTADLIHSGAGPDAVDLDAKYKVGSRVKARVICTFPNAKNPKL 418

Query: 388  GLTLNPYLLHNRA----------PPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 436
            G++L P+++  +A          PP +V  +    D+  V +V+  +GL +D+    +S 
Sbjct: 419  GISLLPHIIKLQAKKAGKGGQAKPPLNVLPIAVRVDKCIVRKVEPEIGLYVDVGVAGLS- 477

Query: 437  PAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
              +V IS V + +V  L +    +KEGS  R R++G+   +G+     + +  E      
Sbjct: 478  -GFVHISKVKDGKVEALYESSGPFKEGSVHRGRVIGYSAFDGMYLMTFEPTIIEQQFIRL 536

Query: 494  SDVKPGMVV-----KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 548
             DV  G +V     K  V      G +V+   G+       H ++  +  P KKF+ G  
Sbjct: 537  EDVPAGEIVSCTIEKVVVGGQGVSGLVVKVAEGITGYVHETHFADVRLQHPEKKFREGMT 596

Query: 549  LVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
            +  RVL V+ ++  + +T KKTLV S   I+ S+ E        G I+ I  HG  + FY
Sbjct: 597  VKARVLSVRPRKRQMRLTLKKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEFY 656

Query: 607  NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
             GV+G+ P S++      +P   + VGQVV   I+   P ++++ +S    P+    D  
Sbjct: 657  KGVRGWLPVSQMSEAFIQDPKEHFKVGQVVNVHILEVDPENQKLLVS-CKDPSAFGLDKQ 715

Query: 667  VKL-----GSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLADHLEHATVMKSVIKP 720
              L     GS+VSG   V+  +   V+V   G + K  +P   L D  + A   +S +K 
Sbjct: 716  AALKALSVGSIVSG--KVIQKSDDDVHVELDGSNLKAILPLGQLTD--KSANKSQSALKR 771

Query: 721  ---GYEFDQLLVLD-NESSN-LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNII 773
               G     LLVLD NE    + LS+K SL+ + +  +L    +     + V G++ +I 
Sbjct: 772  IHMGQTLTDLLVLDKNERRRAITLSSKPSLVEAGKTDKLIRTYADAKVGAEVPGFISSIR 831

Query: 774  ETGCFVRFLGRLTG--FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL--- 828
                 VRF G L G  F  R    D ++          QS+   I  ++ E  R+ +   
Sbjct: 832  PGAVLVRFGGNLVGVMFKTRLPVEDQEKEGFG--LRKDQSITVRIRAIDLERTRLVVDPL 889

Query: 829  -----------------SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG 871
                             +  Q+     D +F Q   ++E KI  +  ++ N      VE 
Sbjct: 890  TAELPSNEVKPKKEKESARPQAHGPVQDITFGQ---IVEAKIVGIHDTQLN------VE- 939

Query: 872  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
                  ++G+V  S  F    S+++  D    ++  +  G TV     ++A  L  +K  
Sbjct: 940  --TADKVQGRVDISQIFD---SWDKIKDPEEPLSQFK-KGDTVR----VRAIGLHDSKDH 989

Query: 932  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS-------KDLGVHQTVNAIVEIVKEN 984
            R +  S         R  NS  +   K    EA        +DL V  T  A V     N
Sbjct: 990  RFLAFS--------HRSYNSVLEFTAKASDIEADVLKPLSLEDLEVGSTHVAFVNNASRN 1041

Query: 985  YLVLSL-PEYNHSIGYASVSDYNTQKFPQ--KQFLNGQSVIATVMALPSSSTAGRLLLLL 1041
             L  ++ P     I    VSD +T K       F  G ++   V+A+     A R +L L
Sbjct: 1042 GLWANISPVVRGRINAMDVSD-DTSKINDVINNFPIGTALKVRVIAV----DAKRGVLDL 1096

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
             A S++  + +  + K +    G +V+     +   ++ +K G    G +H+ +++DD  
Sbjct: 1097 SARSDSSAAVTWDSIKPNQVLAGCVVK-----VNERQIMVKLGSNVAGHVHLVDMSDDFG 1151

Query: 1102 NVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSML--TVSEIGSKLLFE 1157
            +V  N    +  G  +   ++   KSNK          LS +PS +  + S I    +  
Sbjct: 1152 DV--NTL-KYDEGDAIQVSVVEVDKSNK-------RVRLSTRPSRVLNSSSPITDSEITS 1201

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
               V  G  V G+V  V ++   + +   + A + I  S      L+E++  F + + V 
Sbjct: 1202 VKQVVSGSTVRGFVKHVADKGVFVLLGGSVSALVKI--SNLSDRFLKEWKEHFQVDQLVK 1259

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVG 1275
            G VLS+++    + L L+          VD +   ++T+  I    IV G+I K+     
Sbjct: 1260 GRVLSVDEGAGQVELSLK-------SSVVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGA 1312

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISR 1321
             +VV    ++ G  H +E+ +  V D    Y  G  VK KVL + R
Sbjct: 1313 FIVVDGSDNVSGLCHRSEMADSPVEDARKLYQAGDVVKAKVLTLDR 1358


>gi|320165905|gb|EFW42804.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 2281

 Score =  356 bits (913), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 358/1341 (26%), Positives = 590/1341 (43%), Gaps = 231/1341 (17%)

Query: 47   PDDDVPVFPRGGGHSLTQRE----RDEIHAEVDAEFEAVER------------------- 83
            PD+    FPRGG   LT RE    RDE  A+ DA F+                       
Sbjct: 112  PDN----FPRGGAAVLTPRELKTARDE--AKDDALFQEANETDDATPMDMDLDEDTPKPK 165

Query: 84   -------GLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMK 136
                      KK+   K K  + A+ + D+ G++               ++ K +  G+ 
Sbjct: 166  TPKKKAAPTPKKSDATKTKPAKAADASEDESGAI-------------EALSFKRLVPGLV 212

Query: 137  LWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-----------LDNEIEANEDNLLPT 185
            L G + EV E DL++ LP  L G  R  D  + +            D+E   ++   L +
Sbjct: 213  LLGAIREVGEIDLLVSLPNALTGSVRITDITEELKTTVAQITAAATDDEDFTDKLPKLAS 272

Query: 186  IFHVGQLVSCIVL----QLDDDKKEIG-------KRKIWLSLRLSLLYKGLSLETVQEGM 234
            +F VG +V C V     ++D+D  E         KR++ L+L  S + + L+ ET+    
Sbjct: 273  MFSVGDVVQCAVSSVEGKVDEDAGESKPASDKPVKRRVHLTLLPSAINRQLTFETILPNQ 332

Query: 235  VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-----AENSGIDVKPGLLLQGVVRSIDR 289
            ++ A VKS+EDHGY+L  GL     FLP+ N      A  SG  + PG  ++  V S  +
Sbjct: 333  IIPASVKSVEDHGYVLSIGLEGVHAFLPKGNSTAYLKARGSGA-LAPGSYVRCAVVSASK 391

Query: 290  TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 349
              KVV ++ DP  ++  V       S   L+P M V  RV S+  +GV +S+   F GT+
Sbjct: 392  MSKVVTVTVDPAVLTSAVVTATPSASS--LLPDMRVKARVTSVSNSGVRVSY-AGFAGTI 448

Query: 350  DIFHLQNTFPTTNWKNDYNQHKKVN----------ARILFVDPTSRAVGLTLNPYLL-HN 398
            D++HL +T P +  +      + +           ARILFV+ +++ +  T+ P LL H+
Sbjct: 449  DLYHLGDT-PASFAEGGAKTLEAIKELCPVGSELAARILFVNASAKTIAFTIRPGLLTHH 507

Query: 399  RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 458
              P + + +GDI D+++V+  D  LGL+L +P    +   +  IS+++++ +  L KK+ 
Sbjct: 508  VKPATDLHIGDIIDKTRVLTADPQLGLVLHLPVG--NHIGFAHISNLSDDRIGLLGKKFA 565

Query: 459  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
              S  R R++G+  ++GL    L+ S  +        +KPG +V G V+ V   G  VQ 
Sbjct: 566  SNSQHRARVIGYSLIDGLFLVSLQPSVLKLPFLRIEHIKPGSLVTGTVLDVVPAGVTVQL 625

Query: 519  PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAI 576
               ++   P  HMS+ ++ K  K    GA +  RVL V +  +R+ +THKK+LVK+ L I
Sbjct: 626  TDTIRGFIPGSHMSDVQLTKAPKHMSAGASVECRVLEVDTERRRVFLTHKKSLVKTSLPI 685

Query: 577  LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
            +++Y EA   L+T G+IT ++ +GC V F+  V  F P+SEL L    +P   +   QV+
Sbjct: 686  VAAYTEAQPGLVTQGFITSVKPNGCVVTFFGKVHAFVPKSELSLG-AADPEKFFKRNQVM 744

Query: 637  KCRI--MSSIPASRRINLSFMMK----PTRVSEDDL---VKLGSLVSGVVDVVTPNAVVV 687
            K RI  +      RR+  SF         RVS +     +++GS+VSG V      ++ V
Sbjct: 745  KVRILELDLTGERRRLIASFKWNEESASQRVSSEAFGKDLQVGSIVSGTVTSFDETSLTV 804

Query: 688  YVIAKGYSKG--TIPTEHLADHLEH-ATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKY 743
             V       G  TIP+  L DH+ H   +++   + G+  D+ LVL   +   + LS K 
Sbjct: 805  LVKDSHGETGSITIPSSQLTDHVCHEKQLLRVYAEKGFVLDRCLVLAKPAPGRIELSLKP 864

Query: 744  SLINSAQQ---LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 800
            SL+ +A     LP+  S +   +V+ G+V +I   G FV FL  LTG    ++       
Sbjct: 865  SLLEAAASTKVLPA-VSTLATGAVLPGFVKSIQPYGVFVGFLNGLTGLTHLTRLAGHFVT 923

Query: 801  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA---MLQ 857
              ++ + VGQSV++ +++V+ E  ++TLSL  S  +S+ +S     F  E+      +  
Sbjct: 924  APAEEFAVGQSVKAAVVEVDREDSKLTLSLNDSAVTSSSSSAFVSTFFAEQDTIIRRLCA 983

Query: 858  SSKHNGSEL------KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG 911
            ++K + S L      K +        +EG V +    G ++   E   V G+++   LAG
Sbjct: 984  TAKPHESALAIPAARKRLSEIATSITVEGTVTQVKATGAMLDLGE--GVNGWVSKEHLAG 1041

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ--------------- 956
            +       +  A+LDV     LVDLSLK  F+          QA                
Sbjct: 1042 SKPAVNGKLTCAVLDVDPIANLVDLSLKPEFVSASANPFEPLQAHFAAPAPSGTSTPKSK 1101

Query: 957  --KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQ 1014
                     A+   GV  T++AIVE+VK  YL+LS      S  +AS  D+NT       
Sbjct: 1102 KGAASAAAAATPASGV--TIDAIVELVKPEYLILSSAAAPGSHFFASCKDFNTAVRGAPH 1159

Query: 1015 FLNGQSVIATVMALPSSSTAG----------------------------RLLLLLKAISE 1046
            +  G +V   +  LP++ +A                             R L +++  S 
Sbjct: 1160 YNVGNAVKVLLTRLPAAVSAPAATNKGKGKAAAPAASDSVDVLANLSSRRALAVVQGRSA 1219

Query: 1047 TETSSSKRAKK--------------------KSSYDV--GSLVQAEITEIKPLELRLKFG 1084
               + +                         KS  DV  G +VQ  +     + + +  G
Sbjct: 1220 APAAEATNGHASAAAAATSKRASRPTMDNGFKSVDDVKLGQMVQGAVISTSAMHVNVDLG 1279

Query: 1085 IGFHGRIHITEVND--------------------DKSNVV----ENLFSNFKIGQTVTAR 1120
               H R+ ITE+ D                    D+ NV      N  ++F+ G   +AR
Sbjct: 1280 NKVHARLFITEILDHSHVEQPANKRSTPSHTAAADEVNVATIDRNNPLASFQPGMRFSAR 1339

Query: 1121 IIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            ++   +K                 L EL ++P++L    +    L     ++ GQ + GY
Sbjct: 1340 VVGFLDKHSHTYLPISHTVGGTRKLVELCMRPALLAAQSVE---LITIKSLTQGQLLDGY 1396

Query: 1171 VYKVDNEWALLTISRHLKAQL 1191
            V +V ++   ++++  +K ++
Sbjct: 1397 VDEVRSDKVEVSVTPFIKVRV 1417



 Score =  291 bits (744), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/298 (48%), Positives = 211/298 (70%), Gaps = 10/298 (3%)

Query: 1631 RHAKKKEKEEREQEIRAAEERLLEKD--APRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1688
            R  +K  K+  E EI  AE+ LL +D  AP T ++FERLV +SPNSS+ WIK+MAF LS+
Sbjct: 1990 RRQRKAAKKREEAEIAQAEQALLTRDGAAPETVEDFERLVLASPNSSYAWIKFMAFHLSL 2049

Query: 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748
            ++V++AR + ++AL+TI+ REE E+LN+WVA  NLEN++G   ++AV + F RA+  CDP
Sbjct: 2050 SEVDRARQVGDQALKTISYREERERLNVWVALLNLENKFGG--KDAVQQTFDRAVANCDP 2107

Query: 1749 KKVHLALLGLYERTEQNKLADELLYK-MIKKFKHSCKVWLRR-VQRLLKQQQEGVQAVVQ 1806
            K VHL L+G+YE+T   K A E LYK    KFK S KVW++  + +L     EG +A++Q
Sbjct: 2108 KAVHLQLVGIYEQTPGKKEAAEQLYKTTCTKFKDSKKVWIQYGLFKLRNGDVEGARAILQ 2167

Query: 1807 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866
            R+L SLP+ KHI  IS+ A +EFK+G  +RGR++FE IL+ YPKR DLWS+YLD EIR G
Sbjct: 2168 RSLKSLPKRKHIATISKFAQMEFKHGEPERGRTIFENILATYPKRLDLWSVYLDMEIRNG 2227

Query: 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            DV+    +FE+  ++++  KKMK+  K++L++EK  G ++  ++VK KA  Y++S +A
Sbjct: 2228 DVN----VFEKVTNMNMSSKKMKYFLKRWLDFEKIHGNKQSADHVKLKAKSYLQSKMA 2281



 Score = 99.0 bits (245), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 108/194 (55%), Gaps = 9/194 (4%)

Query: 1359 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1418
            +  +ED+    I++G+V++   KGCF+ L   +  +VL+SNLSD ++      +  G+LV
Sbjct: 1628 IRSVEDVRVGQILRGFVRHTDEKGCFVNLGVNVVGRVLISNLSDRFLLKWRTAYSTGQLV 1687

Query: 1419 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1478
              +VL+V+   K++E++ +             +L  +  G     ++  VE YG+F+ IE
Sbjct: 1688 TAKVLAVDLAKKQIELSFRKEHIDPEHFVRAVSLKEIEEGQKYNAKVTGVERYGVFVKIE 1747

Query: 1479 NTNLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKE---KRRISLGMKSSYFKN 1534
            N+++ GL H SE+++    +N  +++  G+ V+V I ++ +E   K +I+  MK S+F +
Sbjct: 1748 NSDIAGLVHASEIADHQAPENFGSLFEVGDSVRVLIKQIVREKGKKAKINFSMKPSHFAD 1807

Query: 1535 DADNLQMSSEEESD 1548
                 +M +E ++D
Sbjct: 1808 -----EMEAEADAD 1816



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 108/465 (23%), Positives = 199/465 (42%), Gaps = 57/465 (12%)

Query: 1077 LELRLKFGIGFH-GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            L L L   +G H G  HI+ ++DD+  ++   F++        AR+I  S         L
Sbjct: 532  LGLVLHLPVGNHIGFAHISNLSDDRIGLLGKKFAS---NSQHRARVIGYS-----LIDGL 583

Query: 1136 WELSIKPSMLTVSEIGSKLLFEECD-VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194
            + +S++PS+L       KL F   + +  G  VTG V  V      + ++  ++   FI 
Sbjct: 584  FLVSLQPSVL-------KLPFLRIEHIKPGSLVTGTVLDVVPAGVTVQLTDTIRG--FIP 634

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
             S     +L +  +    G +V   VL ++ E++ + L  +      S   V    +   
Sbjct: 635  GSHMSDVQLTKAPKHMSAGASVECRVLEVDTERRRVFLTHKKSLVKTSLPIVAAYTEAQP 694

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF----TELKNICVSDPLSGYDEGQ 1310
              + +G I   + +       G VV      +G+VH     +EL ++  +DP   +   Q
Sbjct: 695  GLVTQGFITSVKPN-------GCVVT----FFGKVHAFVPKSEL-SLGAADPEKFFKRNQ 742

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
             +K ++LE+  T          L +S      + S  +S++    GK      DL    I
Sbjct: 743  VMKVRILELDLTGE-----RRRLIASFKWNEESASQRVSSEAF--GK------DLQVGSI 789

Query: 1371 VQGYVKNV--TSKGCFIMLSRKLDAKVLL--SNLSDGYVESPE--KEFPIGKLVAGRVLS 1424
            V G V +   TS    +  S      + +  S L+D      +  + +     V  R L 
Sbjct: 790  VSGTVTSFDETSLTVLVKDSHGETGSITIPSSQLTDHVCHEKQLLRVYAEKGFVLDRCLV 849

Query: 1425 V-EPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1482
            + +P   R+E++LK S    A+ +++   +S L  G ++ G +K ++ YG+F+   N  L
Sbjct: 850  LAKPAPGRIELSLKPSLLEAAASTKVLPAVSTLATGAVLPGFVKSIQPYGVFVGFLN-GL 908

Query: 1483 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
             GL H++ L+   V      +  G+ VK  +++VD+E  +++L +
Sbjct: 909  TGLTHLTRLAGHFVTAPAEEFAVGQSVKAAVVEVDREDSKLTLSL 953



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 16/190 (8%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
            +IE + P  +V G V +V   G  + L+  +   +  S++SD  +    K    G  V  
Sbjct: 599  RIEHIKPGSLVTGTVLDVVPAGVTVQLTDTIRGFIPGSHMSDVQLTKAPKHMSAGASVEC 658

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
            RVL V+   +RV +T K S  +T S   +   +    G +  G I  V+  G  +T    
Sbjct: 659  RVLEVDTERRRVFLTHKKSLVKT-SLPIVAAYTEAQPGLVTQGFITSVKPNGCVVT---- 713

Query: 1481 NLVGLCHV----SELSEDHVDNIETIYRAGEKVKVKILKVD--KEKRRISLGMKSSYFKN 1534
               G  H     SELS    D  E  ++  + +KV+IL++D   E+RR+    K   +  
Sbjct: 714  -FFGKVHAFVPKSELSLGAADP-EKFFKRNQVMKVRILELDLTGERRRLIASFK---WNE 768

Query: 1535 DADNLQMSSE 1544
            ++ + ++SSE
Sbjct: 769  ESASQRVSSE 778


>gi|134111727|ref|XP_775399.1| hypothetical protein CNBE1150 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258058|gb|EAL20752.1| hypothetical protein CNBE1150 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1484

 Score =  355 bits (910), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 225/686 (32%), Positives = 377/686 (54%), Gaps = 47/686 (6%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV----SDPLSGYDEGQFV 1312
            I  G I+ G + +  S   G +VQ+  +L GRVH  +  +  V      PL+    G+ V
Sbjct: 808  IEVGQIITGTVQEQTSQ--GYMVQLPNNLRGRVHPCDSSDYLVLAAGHGPLT---VGEEV 862

Query: 1313 KCKVLEISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            KC VL+++R+ R    ++LS R S + G  +    +++T           ++DL     V
Sbjct: 863  KCYVLDVNRSKRA---IDLSTRLSRVQGKENVVDREINT-----------VDDLKEGESV 908

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G VKN+   G F+ L R + A++++  L D YV+  +  F I +LV+G++LS+ P S  
Sbjct: 909  RGLVKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWKSRFEINQLVSGKILSINPGSNS 968

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
            +E+TL+ + S++A ++ + +LS+   G  V+  +++VE+YG+F+ IE +N+ GLCH SE+
Sbjct: 969  IEMTLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEI 1028

Query: 1492 SEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1548
            +++   ++      +R G++VK KI+ +D EK +IS G+K+SYF  + +  + S +E+ +
Sbjct: 1029 TDNRKADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKASYFGEEFEGGEKSEDEDDE 1088

Query: 1549 EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDM 1608
               E    +N       S         E ED  SL +   E  A+    +    + +P  
Sbjct: 1089 ADEENDEQFNEGDQEMESDAGESGEGQEHEDEESLEIDGGEEEATSDEEDNAPQNFKPAP 1148

Query: 1609 DNGISQNQGH--TDEAKTIDEKNNRH----------AKKKEKEEREQEIRAAEERLLEKD 1656
               ++   G   T EA     +++            AK K K +       A        
Sbjct: 1149 KTALNLGAGFDWTGEAPAAAPESDDESDSDEEAVAPAKAKGKSKAVDLTATAP-----SS 1203

Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1716
             P +  E+ER + +SPNSSF+WI+YM+F L + ++EKAR I  +AL+ I+ REE EKLN+
Sbjct: 1204 RPSSTGEYERALLASPNSSFLWIQYMSFHLQLHEIEKARKIGRQALEKISYREEEEKLNV 1263

Query: 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
            W+A  NLE  +G     A  KVF+ A QY D + V++      +   +++  +EL  K++
Sbjct: 1264 WMALINLEIAFGTV--SATEKVFEEAAQYNDKRTVYMRYAEALQVAGKDEALEELFKKIV 1321

Query: 1777 KKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835
            KKF    + W R  +  L K   E  +A++ R++ SL + KH++ I + A+LEFK G A+
Sbjct: 1322 KKFSAYPESWTRFAEFYLNKGDVEAARALLPRSMKSLDKSKHVETIEKMALLEFKQGDAE 1381

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            RG+++FEG++  +PKR DLW +Y+DQ  ++GD+  +RGL +RA+   L  KK KFLFKK+
Sbjct: 1382 RGKTLFEGLVDRFPKRLDLWGVYIDQVAKVGDIQGVRGLMDRALEQKLTSKKAKFLFKKW 1441

Query: 1896 LEYEKSVGEEERIEYVKQKAMEYVES 1921
            L  E+ +G+    +  K +A E+VE+
Sbjct: 1442 LTIEQRIGDAAGQDKAKTRAREWVEA 1467



 Score =  149 bits (377), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 215/911 (23%), Positives = 377/911 (41%), Gaps = 122/911 (13%)

Query: 4   SSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLT 63
           SS+K+Q +SS   P+   A  +  +N                    D   FPRGGG SLT
Sbjct: 14  SSKKTQNESSSTAPRPAPAFTSTLQN--------------------DETDFPRGGGSSLT 53

Query: 64  QRERDEIHAE--VDAEFEAVERGLHKKNKKKKKKTERKA-----NETVDDLGSLFGDGIS 116
             E  ++  E   +AE EA  +   K  K+K++ ++R+A     NE          D I 
Sbjct: 54  AFEFKQVREEGRREAENEAKHQA-SKGEKRKRQMSDRQAKRLKKNEDAKKKEERDKDNIR 112

Query: 117 GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN 173
            ++  Y      K +  G  +   V  +    L++ LP  L     +   ++ L  +L  
Sbjct: 113 VEILNY------KRLVPGTHVLARVHTILPLHLILSLPNNLLAHVPITEISNTLTQLLTA 166

Query: 174 E------------IEANEDNLLPTIFHVGQLVSCIVLQLDDDKKE--------IGKRKIW 213
           E             + +    L  +F  GQ V   VL L     +            K+ 
Sbjct: 167 EEAMAVDEGEEESDDESSAPDLAQLFVPGQYVHAKVLTLYPTASQSFISQYPITETTKLA 226

Query: 214 LSLRLSLLYKGLSLETVQE----GMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRN 264
             + L+L+ + ++ E  ++    G  L   VKS ED G+I+  GL      S  GF+ ++
Sbjct: 227 SRVELTLIPEKVNSEVAKKDLETGYFLVGEVKSEEDKGWIVGVGLNTQGGSSVEGFVSKD 286

Query: 265 NLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 323
            +A+      + PG LL   + SI    +V +LS +   +++    ++   ++  +VPG 
Sbjct: 287 EVAKFVPAQALIPGQLLPATISSIAAGGRVAHLSLNQQDITRSQISEVS--TVGSIVPGH 344

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---- 379
            V+  + +++ +G+ +    +F GT+D+ HL       + +N Y   KK+ AR+++    
Sbjct: 345 SVNALITAVVPSGLNVKVAGFFDGTIDLAHL--PLGEDDIENKYKIGKKIRARVIYDNLA 402

Query: 380 VDPTSRAVGLTLNPYLLHNRAPPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIP 430
            +P S A  L+  P++L+  +P            + +G +Y   KV RV    G+++   
Sbjct: 403 ANPHSFA--LSALPHVLNFTSPTQEGDNTPLELAIPIGKVYQSVKVTRVLNDWGVMV--- 457

Query: 431 STPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
            T      +V IS +A+E +  L     ++K G+  R R++G   ++G+     + S   
Sbjct: 458 RTQDGLEGFVHISHLADERIPVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQSVLS 517

Query: 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
            L     ++K G  +KG +  +      V   G V  +    H ++  +  P K+FK   
Sbjct: 518 QLFMQVDELKVGQQLKGTIRRLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEG 577

Query: 548 ELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            +  RVL ++    R+ +T KKT ++S LA+   + +     +T G + KI   G  V  
Sbjct: 578 SVKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFEDLKVGEVTLGSVLKIVDKGVIVEL 637

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           + G++ F P SE         S  +++G+ +  R+++   ++ RI +S            
Sbjct: 638 FAGLKAFMPHSECSQTHIKNLSEAFYIGKPLTVRVITVDASASRIVVSAKQAAPTAPATA 697

Query: 666 LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPG 721
             KL  G  VSG V  V    VVV +   G +   +   +L++   H  +  ++  +K G
Sbjct: 698 AEKLEVGEAVSGTVSQVHTEQVVVKLDGNGLT-ALLSLSNLSNQ-RHTGIEELRRSLKEG 755

Query: 722 YEFDQLLVLD-NESSNLL-------LSAKYSLINSAQQLPSDAS-------HIHPNSVVH 766
            + D L+V+  N  S L+       ++AK        + PS  S        I    ++ 
Sbjct: 756 EKIDDLVVVSKNPVSGLIIVNIKKTITAKKEKAKKEDKAPSGISAHVKAIDAIEVGQIIT 815

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR----ADLSKTYYVGQSVRSNILDVNSE 822
           G V      G  V+    L G   R    D       A       VG+ V+  +LDVN  
Sbjct: 816 GTVQEQTSQGYMVQLPNNLRG---RVHPCDSSDYLVLAAGHGPLTVGEEVKCYVLDVNRS 872

Query: 823 TGRITLSLKQS 833
              I LS + S
Sbjct: 873 KRAIDLSTRLS 883



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 125/281 (44%), Gaps = 32/281 (11%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG--- 282
            +++ ++ G ++T  V+     GY++          LP N        D    L+L     
Sbjct: 804  AIDAIEVGQIITGTVQEQTSQGYMVQ---------LPNNLRGRVHPCDSSDYLVLAAGHG 854

Query: 283  ----------VVRSIDRTRKVVYLSSDPDTVS---KCVTKDLKGISIDLLVPGMMVSTRV 329
                       V  ++R+++ + LS+    V      V +++   ++D L  G  V   V
Sbjct: 855  PLTVGEEVKCYVLDVNRSKRAIDLSTRLSRVQGKENVVDREIN--TVDDLKEGESVRGLV 912

Query: 330  QSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 389
            ++I  +GV +S     T  + I  L + +   +WK+ +  ++ V+ +IL ++P S ++ +
Sbjct: 913  KNIAGHGVFVSLGRNVTARIMIKELFDEY-VKDWKSRFEINQLVSGKILSINPGSNSIEM 971

Query: 390  TLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDV 445
            TL      +    + + + D  +  KVV V R     G+ L I  + VS   + + I+D 
Sbjct: 972  TLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEITDN 1031

Query: 446  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
             + +V +  K ++EG  V+ +I+     +G  +  +KAS F
Sbjct: 1032 RKADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKASYF 1072


>gi|453087833|gb|EMF15874.1| nucleic acid-binding protein [Mycosphaerella populorum SO2202]
          Length = 1804

 Score =  354 bits (909), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 378/1448 (26%), Positives = 660/1448 (45%), Gaps = 179/1448 (12%)

Query: 541  KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH-----GWITK 595
            KK+KVG++   R++    +       +     +L  +SS  E  D  IT      G   K
Sbjct: 401  KKYKVGSKTHARIVFAIPEDDGARRTQAAELGQLLPMSSVVE--DAKITQVSQNKGLYLK 458

Query: 596  IE-KHGCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            +  KHG   R    V  FA  S++    ++     S  Y +    K RI+   P      
Sbjct: 459  LSAKHG---RDERSVTAFAHISQISDKRIESLSSTSGPYTIDSAHKVRIIGYSPIDNIYY 515

Query: 652  LSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV----VYVIAKGYSKGTIPTEHL 704
            +S    ++    +  DDL  +G++V+G VD +          + V       G +P +H+
Sbjct: 516  VSLKQSVLDQAFLRLDDLT-VGAVVNGTVDKIILGGATGLTGILVKLSDNITGLVPEQHI 574

Query: 705  ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSA-QQLPSDASHIHPN 762
            +D        K   + G+    ++L +D E  ++ L+ K  L++ A +++      + P 
Sbjct: 575  SDAQLKNPERK--YREGFPVKARILSVDTEKRHVRLTLKKQLVDDANEEIWKAYQGLQPG 632

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
                G +  +   G  V+F G +  + P ++  +       + +  GQ+VR  I+ V+ +
Sbjct: 633  MESKGTIIKLHPNGAVVQFYGPVRAWLPVAEMSETFIERPEQHFRSGQTVRVKIVSVSPD 692

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
            T  + ++ K       D    QE     +K+A        G +L      + G+V E K 
Sbjct: 693  TEEMKVTCKDHVAFGAD----QEQAW--DKVA--------GGQL------VSGTVTE-KS 731

Query: 883  HESNDFGVVVSFEEHSDVYGF--ITHH---QLAGATVESGSVIQAA------ILDVAKAE 931
             ES      +S +  S + G   +TH     LA A  E+  V          +LD     
Sbjct: 732  AES------ISLDLESGLRGMMRLTHFVDGSLAKAEKEAKRVRVGQKLKHLLVLDKIDRS 785

Query: 932  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLG-VHQTVNAIVEIVKENYLVLSL 990
            + V LS K   ++  +  N        K   + +K  G V  T +  + +   N +V  L
Sbjct: 786  QTVMLSNKPSLVEDAKAGNLISTFSDVK---QGTKVHGFVRNTTSDAIFVEFANGIVGLL 842

Query: 991  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISET-ET 1049
            P+           D+  +K    Q LN       V  + +  +A R  L ++  + T E 
Sbjct: 843  PKSQILAEALDKPDFGVRK---DQTLN-------VWVMDTDVSAKRFRLTMREQAATAEQ 892

Query: 1050 SSSKRA--------------KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 1095
            SS+ +A              K  S  + G + +A I  I+  ++ ++      GR+ ++E
Sbjct: 893  SSNPKASIDDALSKPIDPALKSLSDIEPGKVTKARIASIRATQINVRLADNVQGRVDVSE 952

Query: 1096 VNDDKSNVVENL--FSNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSM 1144
            V D    +        +FK    +  +++   +  + +         K  ++ELS K S 
Sbjct: 953  VFDSWDEISNKAAPLQSFKQNDLIDVKVLGIHDARNHRFLPFSHRQGKVPVFELSAKKSR 1012

Query: 1145 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1204
            +   +   K L +   V  G     +V         + +S +++ ++ ++D + +  +LQ
Sbjct: 1013 VQKDD---KSLLDLESVKPGSSQLAFVNNHAENCVWVNLSPNVRGRVALMDLSDDVGQLQ 1069

Query: 1205 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG 1264
              + RF IG A+  +V +++     L L  +               DN  T +   D+  
Sbjct: 1070 NVENRFRIGCALRVNVKAVDISAGRLDLTAK--------------QDNASTPLALKDLSP 1115

Query: 1265 GRI--SKILSGVGGLV-VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISR 1321
            G +  ++++      V V++  +L   V   EL +   S  L  Y +   V+  V+ +  
Sbjct: 1116 GMVLPARVIKATERAVSVELAKNLVAHVPLVELSDDYDSINLMQYSKNDIVRACVISVDA 1175

Query: 1322 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1381
              +  F   +SLR S           LS+ +      +  +  L    IV+G+VK V  K
Sbjct: 1176 PNKRAF---VSLRPS---------KVLSSSLPVKDAQISNVSQLKAADIVRGFVKKVADK 1223

Query: 1382 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            G F+ L   +DA V +S+LSD YV+     + + +LV GRVLSV+  +K+V+++LK S  
Sbjct: 1224 GVFVSLGADVDALVRISDLSDQYVKEWRSIYVVDQLVKGRVLSVDTDAKQVQLSLKQSHV 1283

Query: 1442 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN--LVGLCHVSELSEDHVDNI 1499
                +  +  +++L  G  V G++++VE +G FI I+NT   L GLCH SE++    +++
Sbjct: 1284 DGNYEPPLG-ITDLEAGMTVTGKVRKVEDFGAFIDIDNTQPRLSGLCHRSEVAARRTEDV 1342

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNR 1559
              +Y AG+ VK K+LKVD E R+ISLG+K+SYF N+ D+     E+  DE ++  G    
Sbjct: 1343 RKLYSAGDVVKAKVLKVDVENRKISLGLKASYFANETDDGDDEDEDSEDEDVDMDGGVE- 1401

Query: 1560 SSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHT 1619
               L N S    ++D + +D  S    +        P + +          G  +  G  
Sbjct: 1402 ---LSNDSDGGVEIDRDVQDADSEADVEDMMDVDDEPAKAS----------GGLKTSGFN 1448

Query: 1620 DEAKTIDEKNNRHAKKKEKEERE-------QEIRAAEERLLEKDAPRTPDEFERLVRSSP 1672
             E + +D   N  A + E E           EI+      L+K+ P++  +FER +   P
Sbjct: 1449 WEGEDLDAGTNGAAYESEPETVTTKKKKRKSEIKEDLTGDLDKNGPQSNSDFERQLLGQP 1508

Query: 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1732
            N+S +WI+YMAF L ++++++AR+IAERAL+TINIRE +EKLNIW+A  NLE EYG+  +
Sbjct: 1509 NNSGLWIQYMAFQLRLSEIQQARNIAERALRTINIRESDEKLNIWIALLNLEVEYGD--D 1566

Query: 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI--KKFKHSCKVWLRRV 1790
            + V + F+ A+Q  DP ++H  L  +Y  + ++  AD +  +MI  K F+ S +VWL   
Sbjct: 1567 DGVEEAFKNAVQVQDPLEMHEKLASIYIDSGRHAKADGIFERMIANKTFRASPEVWLNYA 1626

Query: 1791 QRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILS 1846
              LL+     +  +A++ +AL S+P ++H    ++ A LEF+  NG A+RGR++FEG++S
Sbjct: 1627 TFLLETLGNADRARALLTKALHSVPTNEHRLLTAKFAALEFRSVNGDAERGRTIFEGLMS 1686

Query: 1847 EYPKRTDLWSIYLDQE-----------IRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            E+ K +  W +++D E            ++  V+  R LFER + L +  ++ KF+FKK+
Sbjct: 1687 EWSKWSSGWDMWVDIERSRISTQSSDDAKMEAVEKTRELFERIVKLPMKKRRAKFVFKKW 1746

Query: 1896 LEYEKSVG 1903
            L++E   G
Sbjct: 1747 LDFENKEG 1754



 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 330/1388 (23%), Positives = 584/1388 (42%), Gaps = 177/1388 (12%)

Query: 53   VFPRGGGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSL 110
             FPRGGG  LT  ER +I   AE D  FE              ++T +KA E  DD G L
Sbjct: 59   AFPRGGGSVLTPIERKQIEAQAERDVLFE--------------QETGQKA-EAKDDDGEL 103

Query: 111  F-----------------GDGISGKLPRYANK------ITLKNISAGMKLWGVVAEVNEK 147
            F                 GDG    LP+          ++ K ++ G  + G V  +  +
Sbjct: 104  FDKVDSAPAKKKRKTTRKGDG----LPQVEGSGVKISGLSYKTLAVGSVVLGRVTAITGR 159

Query: 148  DLVICLPGGLRGLA-------RAADALDPILDN-------EIEANEDNLLPTIFHVGQLV 193
            D+ + LP  L G         R    ++ +LD+       + E +ED  L  +FHVGQ +
Sbjct: 160  DVALALPNNLTGYVPITAVSERLTARIERMLDDAKSGADEDDEDDEDIDLKQLFHVGQWL 219

Query: 194  SCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF 252
               V     D  E   K+ I LSL  + +  GL  + V    V+ A V+S+EDHG I+  
Sbjct: 220  RATVTSTGTDPAEGKSKKHIELSLDPTTVNGGLPEDNVVVNSVVQAAVRSVEDHGLIMDL 279

Query: 253  GLP--SFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV-T 308
            GL   S  GF+ +  L     +D V+ G ++  +V       KV+ +S DP  +S  +  
Sbjct: 280  GLSDESVKGFVSKKELGYAYDLDKVQEGQVMLCLVTGKGSNGKVLKISPDPSRMSLALGD 339

Query: 309  KDLKGI----SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT-FPTTNW 363
            K L  I    S+D ++PG  V   +     +GV+   +     T D  H Q       + 
Sbjct: 340  KKLPTISDAPSVDAILPGTAVDVLITESGPSGVVGKIMGMLDVTADAIHSQAIGLEEKDM 399

Query: 364  KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGL 423
               Y    K +ARI+F  P       T     L    P S V      + +K+ +V +  
Sbjct: 400  SKKYKVGSKTHARIVFAIPEDDGARRT-QAAELGQLLPMSSV-----VEDAKITQVSQNK 453

Query: 424  GLLLDIPST----PVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGL 476
            GL L + +       S  A+  IS ++++ +  L      Y   S  +VRI+G+  ++ +
Sbjct: 454  GLYLKLSAKHGRDERSVTAFAHISQISDKRIESLSSTSGPYTIDSAHKVRIIGYSPIDNI 513

Query: 477  ATGILKASAFEGLVFTHSDVKPGMVVKG---KVI---AVDSFGAIVQFPGGVKALCPLPH 530
                LK S  +       D+  G VV G   K+I   A    G +V+    +  L P  H
Sbjct: 514  YYVSLKQSVLDQAFLRLDDLTVGAVVNGTVDKIILGGATGLTGILVKLSDNITGLVPEQH 573

Query: 531  MSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV-KSKLAILSSYAEATDRL 587
            +S+ ++  P +K++ G  +  R+L V +++  + +T KK LV  +   I  +Y      +
Sbjct: 574  ISDAQLKNPERKYREGFPVKARILSVDTEKRHVRLTLKKQLVDDANEEIWKAYQGLQPGM 633

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
             + G I K+  +G  V+FY  V+ + P +E+       P   +  GQ V+ +I+S  P +
Sbjct: 634  ESKGTIIKLHPNGAVVQFYGPVRAWLPVAEMSETFIERPEQHFRSGQTVRVKIVSVSPDT 693

Query: 648  RRINLS----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
              + ++          +    D V  G LVSG   V   +A  + +  +   +G +   H
Sbjct: 694  EEMKVTCKDHVAFGADQEQAWDKVAGGQLVSGT--VTEKSAESISLDLESGLRGMMRLTH 751

Query: 704  LAD-HLEHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQ--QLPSDASH 758
              D  L  A      ++ G +   LLVLD  + S  ++LS K SL+  A+   L S  S 
Sbjct: 752  FVDGSLAKAEKEAKRVRVGQKLKHLLVLDKIDRSQTVMLSNKPSLVEDAKAGNLISTFSD 811

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK----AVD----GQRADLSKTYYVGQ 810
            +   + VHG+V N      FV F   + G  P+S+    A+D    G R D        Q
Sbjct: 812  VKQGTKVHGFVRNTTSDAIFVEFANGIVGLLPKSQILAEALDKPDFGVRKD--------Q 863

Query: 811  SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            ++   ++D +    R  L++++   ++  +S  +    +++ +     SK     LK + 
Sbjct: 864  TLNVWVMDTDVSAKRFRLTMREQAATAEQSSNPKAS--IDDAL-----SKPIDPALKSLS 916

Query: 871  GFIIGSVIEGKVHE----------SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
                G V + ++            +++    V   E  D +  I++      + +   +I
Sbjct: 917  DIEPGKVTKARIASIRATQINVRLADNVQGRVDVSEVFDSWDEISNKAAPLQSFKQNDLI 976

Query: 921  QAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
               +L +  A+  R +  S +   +  F  +    + QK  +     + +    +  A V
Sbjct: 977  DVKVLGIHDARNHRFLPFSHRQGKVPVFELSAKKSRVQKDDKSLLDLESVKPGSSQLAFV 1036

Query: 979  EIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGR 1036
                EN + ++L P     +    +SD   Q +  + +F  G ++   V A+  S  AGR
Sbjct: 1037 NNHAENCVWVNLSPNVRGRVALMDLSDDVGQLQNVENRFRIGCALRVNVKAVDIS--AGR 1094

Query: 1037 LLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV 1096
            L L  K     + +S+  A K  S   G ++ A + +     + ++        + + E+
Sbjct: 1095 LDLTAK----QDNASTPLALKDLSP--GMVLPARVIKATERAVSVELAKNLVAHVPLVEL 1148

Query: 1097 NDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLF 1156
            +DD  ++  NL   +     V A +I+  + P+ K++F   +S++PS +    + S L  
Sbjct: 1149 SDDYDSI--NLM-QYSKNDIVRACVIS-VDAPN-KRAF---VSLRPSKV----LSSSLPV 1196

Query: 1157 EECDVS------IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
            ++  +S          V G+V KV ++   +++   + A + I D + +   ++E++  +
Sbjct: 1197 KDAQISNVSQLKAADIVRGFVKKVADKGVFVSLGADVDALVRISDLSDQ--YVKEWRSIY 1254

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQ-DGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
             + + V G VLS++ + K ++L L+    DG  +  + I++      +  G  V G++ K
Sbjct: 1255 VVDQLVKGRVLSVDTDAKQVQLSLKQSHVDGNYEPPLGITD------LEAGMTVTGKVRK 1308

Query: 1270 ILS-GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
            +   G    +    P L G  H +E+      D    Y  G  VK KVL++    R    
Sbjct: 1309 VEDFGAFIDIDNTQPRLSGLCHRSEVAARRTEDVRKLYSAGDVVKAKVLKVDVENR---K 1365

Query: 1329 VELSLRSS 1336
            + L L++S
Sbjct: 1366 ISLGLKAS 1373


>gi|380482965|emb|CCF40910.1| rRNA biogenesis protein RRP5, partial [Colletotrichum higginsianum]
          Length = 1210

 Score =  354 bits (909), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 330/1239 (26%), Positives = 572/1239 (46%), Gaps = 143/1239 (11%)

Query: 737  LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            L L+ K +L+NS   +  +           G +      G  + F G + GF P S+  +
Sbjct: 43   LRLTLKKTLVNSDAPIVKNYDDAEVGMQTPGTITGFTAAGAQLEFFGDVRGFLPLSQMSE 102

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
                D  + + VGQ V  ++LDVN E  R+ +S K               F L+++ A+ 
Sbjct: 103  AYIKDPKEHFRVGQVVSVHVLDVNPEERRMVVSCKDPSA-----------FGLDKQAAL- 150

Query: 857  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
                         +   IG ++  KV +  +  V V  EE S +   I    L+    +S
Sbjct: 151  -------------KALKIGDIVSAKVSQKTEDEVFVDLEE-SGLKAIIRTGHLSD---KS 193

Query: 917  GSVIQAAILDVAKAERLVDLSLKTVFIDR--------FREANSNRQAQKKKRKREASKDL 968
             S  QAA   +     L DL    V +D+          +  S  +A KK     +++D+
Sbjct: 194  ASKTQAAWKRINVGNLLSDL----VVLDKNERRRAVILTQKPSFAEASKKGTLLSSAEDV 249

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 1028
             V   V A V  +    + +        I   +    + Q+ P       QS+   V  +
Sbjct: 250  TVGAVVPAYVREIGPFAVYVQFGGSLTGILPKAKLPKDAQEKPAFGMRKHQSI--EVKIV 307

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRA--------KKKSSYDVGSLVQAEITEIKPLELR 1080
             S+    R+++   +  E    + + A        K  +   +G+++ A++  IK  +L 
Sbjct: 308  SSNPEQNRIIVAPASADEPAPIAPESAVNSVDDSIKTINDIALGTILNAKVMSIKNTQLN 367

Query: 1081 LKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARIIAKSNKPDMK------- 1131
            +K      GRI +++  D   N+  ++N     K  + +  R I   +  + +       
Sbjct: 368  VKVADNIQGRIDVSQFFDAWENIKNLKNPLQQVKANEIIRVRAIGIHDSKNYRFLPFSHR 427

Query: 1132 -KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQ 1190
                L E + K S +   E+    L     + +G     +V         + +S  ++ +
Sbjct: 428  STHSLIEFTAKASDIKAKEVE---LLSYDKIEVGSSHVAFVNNHGKNCLWVNLSPTVRGR 484

Query: 1191 LFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1250
            + I+D + + S     ++ F +G A+   VLS++ +K  L L  R    G S+ T D   
Sbjct: 485  ISIMDVSDDLSHAGNLEKYFPVGSALKVRVLSVDADKGHLDLSSR-SSTGSSEVTWDSLK 543

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
             NM         + GR++K+      ++V++   + G VH  +L +         Y +G+
Sbjct: 544  KNM--------TLPGRVTKV--NDRSVMVKLSDSVSGPVHLVDLCDNYDEANTLKYTKGE 593

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
             ++  V+E+ ++ +    + LS R S    S++  +D         + + K+  +S   I
Sbjct: 594  IIRVSVVEVDKSNK---RLRLSTRPSRILSSTSPVAD---------REITKLPQISSGDI 641

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            ++G+VKNVT KG F+ L   + A V + NLSD Y++  +  F + +LV GRV++V+    
Sbjct: 642  IRGFVKNVTDKGVFVQLGGTVSAYVKIGNLSDRYIKDWKGNFQVDQLVKGRVINVDTAIN 701

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVS 1489
            +VE++LK S         +    ++  G IV G++++VE +G FI ++N+ N+ GLCH S
Sbjct: 702  QVELSLKASVVENDYTPPVT-YKDIKEGQIVTGKVRKVEEFGAFIVVDNSHNVSGLCHRS 760

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD--NLQMSSEEES 1547
            E++E  V++   +Y  G+ VK KIL VD E++RI+  +K S+F  D+D  +++  +E  S
Sbjct: 761  EMAEKPVEDARRLYSEGDVVKAKILSVDDERKRITFSLKPSHFDEDSDMEDVEGGAELAS 820

Query: 1548 DEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG-SLVLAQIES----------RASVPP 1596
            DE                      D D+E  DGG  L ++  ++                
Sbjct: 821  DE----------------------DSDVEMGDGGVQLTISGTDNFDDSDEDEDDEEEEEE 858

Query: 1597 LEVNLDDEQPDMDNGISQNQGHTD-EAKTIDEKNNRHAKK-------KEKEEREQEIRAA 1648
             + +  + +     G   + G  D      DE +     K       ++KE+++  I+  
Sbjct: 859  EDDSDVEMEDKAATGKGLSAGKYDWTGDAFDESDGESTSKTKKPTATEKKEKKQSGIQVD 918

Query: 1649 EERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1708
                L+   P+T  ++ERL+   P+SS +WI+YMA  + ++++ KAR IAERA++TINIR
Sbjct: 919  RTADLDAHGPQTATDYERLLLGEPDSSQLWIQYMALQMKVSELAKAREIAERAIKTINIR 978

Query: 1709 EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLA 1768
            E+ EKLN+W+AY NLE  YG   + +  +VF+RA QY D ++VH  L  +Y ++ + K A
Sbjct: 979  EQMEKLNVWIAYLNLEVAYGT--KASTEEVFKRACQYNDEQEVHERLASIYIQSGKLKQA 1036

Query: 1769 DELLYKMIKKFK-HSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFISQTA 1825
            D++   ++ KFK  S KVW      L     + +  +A++ RA  +L      + ++   
Sbjct: 1037 DDVFQSLVAKFKSKSPKVWENYAHFLHVTMNEPDRARALLPRATQALEERHTAQLMASFG 1096

Query: 1826 ILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD--LIRGLFER-AIS 1880
             LEFK  NG A+RGR+ FE IL+ +PKR DLW+   D EI   + D   IR +FER A +
Sbjct: 1097 ALEFKSPNGDAERGRTTFETILATWPKRFDLWNQLADLEISAAEPDATAIRDVFERGAKA 1156

Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
              L PKK    FK++ E+E+ +  + R + V  KA E+V
Sbjct: 1157 KGLKPKKAMKWFKRWAEWEQKLSPKGR-DKVMAKAQEWV 1194



 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 149/321 (46%), Gaps = 14/321 (4%)

Query: 521 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILS 578
           G+       H+++ ++  P KKF+ G  +  RVL V+ ++  + +T KKTLV S   I+ 
Sbjct: 1   GITGYVHESHLADVKLQHPEKKFREGITVKARVLSVRPRKRQLRLTLKKTLVNSDAPIVK 60

Query: 579 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
           +Y +A   + T G IT     G  + F+  V+GF P S++      +P   + VGQVV  
Sbjct: 61  NYDDAEVGMQTPGTITGFTAAGAQLEFFGDVRGFLPLSQMSEAYIKDPKEHFRVGQVVSV 120

Query: 639 RIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
            ++   P  RR+ +S    P+    D       +K+G +VS  V   T + V V +   G
Sbjct: 121 HVLDVNPEERRMVVS-CKDPSAFGLDKQAALKALKIGDIVSAKVSQKTEDEVFVDLEESG 179

Query: 694 YSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLINSAQ 750
             K  I T HL+D     T      I  G     L+VLD NE    ++L+ K S   +++
Sbjct: 180 L-KAIIRTGHLSDKSASKTQAAWKRINVGNLLSDLVVLDKNERRRAVILTQKPSFAEASK 238

Query: 751 Q--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
           +  L S A  +   +VV  YV  I     +V+F G LTG  P++K     +   +     
Sbjct: 239 KGTLLSSAEDVTVGAVVPAYVREIGPFAVYVQFGGSLTGILPKAKLPKDAQEKPAFGMRK 298

Query: 809 GQSVRSNILDVNSETGRITLS 829
            QS+   I+  N E  RI ++
Sbjct: 299 HQSIEVKIVSSNPEQNRIIVA 319



 Score = 61.6 bits (148), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +  G +++G V  V   G  VQ  G V A   + ++S+  I      F+V   +  RV+ 
Sbjct: 636 ISSGDIIRGFVKNVTDKGVFVQLGGTVSAYVKIGNLSDRYIKDWKGNFQVDQLVKGRVIN 695

Query: 556 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQG 611
           V +   ++ ++ K ++V++      +Y +  +  I  G + K+E+ G F+   N   V G
Sbjct: 696 VDTAINQVELSLKASVVENDYTPPVTYKDIKEGQIVTGKVRKVEEFGAFIVVDNSHNVSG 755

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
              RSE+   P  +   +Y  G VVK +I+S     +RI  +F +KP+   ED
Sbjct: 756 LCHRSEMAEKPVEDARRLYSEGDVVKAKILSVDDERKRI--TFSLKPSHFDED 806



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHS 494
            YV  S +A+ +++  EKK++EG  V+ R+L  R  +      LK +       +V  + 
Sbjct: 4   GYVHESHLADVKLQHPEKKFREGITVKARVLSVRPRKRQLRLTLKKTLVNSDAPIVKNYD 63

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D + GM   G +    + GA ++F G V+   PL  MSE  I  P + F+VG  +   VL
Sbjct: 64  DAEVGMQTPGTITGFTAAGAQLEFFGDVRGFLPLSQMSEAYIKDPKEHFRVGQVVSVHVL 123

Query: 555 GV--KSKRITVTHK 566
            V  + +R+ V+ K
Sbjct: 124 DVNPEERRMVVSCK 137



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 20/265 (7%)

Query: 314 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
           ++ D L   M +  RV  + +  VM+      +G V +  L + +   N    Y + + +
Sbjct: 537 VTWDSLKKNMTLPGRVTKVNDRSVMVKLSDSVSGPVHLVDLCDNYDEAN-TLKYTKGEII 595

Query: 374 NARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLG 424
              ++ VD +++ + L+  P  + +   P           +  GDI         D+G+ 
Sbjct: 596 RVSVVEVDKSNKRLRLSTRPSRILSSTSPVADREITKLPQISSGDIIRGFVKNVTDKGVF 655

Query: 425 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 484
           + L       +  AYV I ++++  ++  +  ++    V+ R++            LKAS
Sbjct: 656 VQLG-----GTVSAYVKIGNLSDRYIKDWKGNFQVDQLVKGRVINVDTAINQVELSLKAS 710

Query: 485 AFEGLV---FTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKP 539
             E       T+ D+K G +V GKV  V+ FGA  +V     V  LC    M+E  +   
Sbjct: 711 VVENDYTPPVTYKDIKEGQIVTGKVRKVEEFGAFIVVDNSHNVSGLCHRSEMAEKPVEDA 770

Query: 540 GKKFKVGAELVFRVLGVKSKRITVT 564
            + +  G  +  ++L V  +R  +T
Sbjct: 771 RRLYSEGDVVKAKILSVDDERKRIT 795



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 123/555 (22%), Positives = 228/555 (41%), Gaps = 87/555 (15%)

Query: 187 FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL---YKGL---SLETVQEGMVLTAYV 240
            +VG L+S +V+ LD +++   +R + L+ + S      KG    S E V  G V+ AYV
Sbjct: 204 INVGNLLSDLVV-LDKNER---RRAVILTQKPSFAEASKKGTLLSSAEDVTVGAVVPAYV 259

Query: 241 KSIEDHGYILHFGLPSFTGFLPRNNLAENS------GIDVKPGLLLQGVVRSIDRTRKVV 294
           + I      + FG  S TG LP+  L +++      G+     + ++ V  + ++ R +V
Sbjct: 260 REIGPFAVYVQFG-GSLTGILPKAKLPKDAQEKPAFGMRKHQSIEVKIVSSNPEQNRIIV 318

Query: 295 YLSSD-------PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
             +S        P++    V   +K  +I+ +  G +++ +V SI    + +       G
Sbjct: 319 APASADEPAPIAPESAVNSVDDSIK--TINDIALGTILNAKVMSIKNTQLNVKVADNIQG 376

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL------TLNPY------- 394
            +D+    + +   N KN  N  ++V A  +      RA+G+         P+       
Sbjct: 377 RIDVSQFFDAW--ENIKNLKNPLQQVKANEII---RVRAIGIHDSKNYRFLPFSHRSTHS 431

Query: 395 LLHNRAPPSHVKVGDI----YDQ-----SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 445
           L+   A  S +K  ++    YD+     S V  V+      L +  +P +    ++I DV
Sbjct: 432 LIEFTAKASDIKAKEVELLSYDKIEVGSSHVAFVNNHGKNCLWVNLSP-TVRGRISIMDV 490

Query: 446 AEE--EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
           +++      LEK +  GS ++VR+L     +G    +   S+      T   +K  M + 
Sbjct: 491 SDDLSHAGNLEKYFPVGSALKVRVLSVDADKG-HLDLSSRSSTGSSEVTWDSLKKNMTLP 549

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561
           G+V  V+    +V+    V     L  + +        K+  G  +   V+ V   +KR+
Sbjct: 550 GRVTKVNDRSVMVKLSDSVSGPVHLVDLCDNYDEANTLKYTKGEIIRVSVVEVDKSNKRL 609

Query: 562 TVTHKKTLVKSKLAILSSYAEATDRLIT-----------HGWITKIEKHGCFVRFYNGVQ 610
            ++ + +       ILSS +   DR IT            G++  +   G FV+    V 
Sbjct: 610 RLSTRPS------RILSSTSPVADREITKLPQISSGDIIRGFVKNVTDKGVFVQLGGTVS 663

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---- 666
            +     L      +    + V Q+VK R+++   A  ++ LS       V E+D     
Sbjct: 664 AYVKIGNLSDRYIKDWKGNFQVDQLVKGRVINVDTAINQVELSLK---ASVVENDYTPPV 720

Query: 667 ----VKLGSLVSGVV 677
               +K G +V+G V
Sbjct: 721 TYKDIKEGQIVTGKV 735



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 137/330 (41%), Gaps = 38/330 (11%)

Query: 373 VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 432
           V AR+L V P  R + LTL   L+++ AP     +   YD ++V     G          
Sbjct: 29  VKARVLSVRPRKRQLRLTLKKTLVNSDAP-----IVKNYDDAEVGMQTPGTITGFTAAGA 83

Query: 433 PV----STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGL---------ATG 479
            +        ++ +S ++E  ++  ++ ++ G  V V +L     E           A G
Sbjct: 84  QLEFFGDVRGFLPLSQMSEAYIKDPKEHFRVGQVVSVHVLDVNPEERRMVVSCKDPSAFG 143

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVK 538
           + K +A + L       K G +V  KV         V     G+KA+    H+S+    K
Sbjct: 144 LDKQAALKAL-------KIGDIVSAKVSQKTEDEVFVDLEESGLKAIIRTGHLSDKSASK 196

Query: 539 ---PGKKFKVGAELVFRVLGVKSKR---ITVTHKKTLVKS--KLAILSSYAEATDRLITH 590
                K+  VG  L   V+  K++R   + +T K +  ++  K  +LSS  + T   +  
Sbjct: 197 TQAAWKRINVGNLLSDLVVLDKNERRRAVILTQKPSFAEASKKGTLLSSAEDVTVGAVVP 256

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
            ++ +I     +V+F   + G  P+++L  D   +P+      Q ++ +I+SS P   RI
Sbjct: 257 AYVREIGPFAVYVQFGGSLTGILPKAKLPKDAQEKPAFGMRKHQSIEVKIVSSNPEQNRI 316

Query: 651 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVV 680
               ++ P    E   +   S V+ V D +
Sbjct: 317 ----IVAPASADEPAPIAPESAVNSVDDSI 342



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 120/296 (40%), Gaps = 58/296 (19%)

Query: 125 KITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLP 184
           ++T  ++   M L G V +VN++ +++ L   + G     D    + DN  EAN      
Sbjct: 536 EVTWDSLKKNMTLPGRVTKVNDRSVMVKLSDSVSGPVHLVD----LCDNYDEAN-----T 586

Query: 185 TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS---------LETVQEGMV 235
             +  G+++   V+++D   K     ++ LS R S +    S         L  +  G +
Sbjct: 587 LKYTKGEIIRVSVVEVDKSNK-----RLRLSTRPSRILSSTSPVADREITKLPQISSGDI 641

Query: 236 LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL----LLQGVVRSIDRTR 291
           +  +VK++ D G  +  G  + + ++   NL++    D K       L++G V ++D   
Sbjct: 642 IRGFVKNVTDKGVFVQLG-GTVSAYVKIGNLSDRYIKDWKGNFQVDQLVKGRVINVDTAI 700

Query: 292 KVVYLSSDPDTVSKCVT-----KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
             V LS     V    T     KD+K         G +V+ +V+ + E G  +       
Sbjct: 701 NQVELSLKASVVENDYTPPVTYKDIK--------EGQIVTGKVRKVEEFGAFI------- 745

Query: 347 GTVDIFHLQNTF---------PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
             VD  H  +           P  + +  Y++   V A+IL VD   + +  +L P
Sbjct: 746 -VVDNSHNVSGLCHRSEMAEKPVEDARRLYSEGDVVKAKILSVDDERKRITFSLKP 800


>gi|74183408|dbj|BAE36581.1| unnamed protein product [Mus musculus]
          Length = 1014

 Score =  354 bits (908), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 294/1014 (28%), Positives = 494/1014 (48%), Gaps = 83/1014 (8%)

Query: 54   FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
            FPRGG   L + E+            +V  E   ++R   +K   K KK + +  +++  
Sbjct: 8    FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67

Query: 107  LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
            +   F              ++L+++  GM++ G V EV+E +LV+ LP GL+G  +  + 
Sbjct: 68   IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115

Query: 167  LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
             D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+   
Sbjct: 116  CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173

Query: 220  LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
             + K LS + ++ GM+LT  V S+EDHGY++  G+     FL      E     N G   
Sbjct: 174  RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
            K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ + +
Sbjct: 234  KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
             G+ L+FLT+F G VD  HL+           Y+ ++ V A IL V P +R V L+L P 
Sbjct: 294  FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348

Query: 395  LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
             LH   P + +   ++G + D   V    +  G +  +    +   AY  +S +++ +  
Sbjct: 349  FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405

Query: 452  KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
               + +K GS  + RI+ +  ++ LA   L+ S        + D+K G VVKG V+A+  
Sbjct: 406  FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465

Query: 512  FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL 569
            FG +V+    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTL
Sbjct: 466  FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V SKL++++ Y  A   L THG I +++ +GC V+FYN VQG  P+ EL      +P ++
Sbjct: 526  VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585

Query: 630  YHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL---------VKLGSLVSGVVDV 679
            ++ GQVVK  ++S  P+  R+ LSF ++  +R  +  +         V++G LV   V  
Sbjct: 586  FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645

Query: 680  VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
             T   + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL
Sbjct: 646  KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704

Query: 740  SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
              K +L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D 
Sbjct: 705  CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764

Query: 798  QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
                 S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   
Sbjct: 765  FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824

Query: 855  MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
            +    S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG 
Sbjct: 825  IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             VE G   +  +L V   +  V +SL    ++R           K ++ R++S+    HQ
Sbjct: 885  EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV 1025
                IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+
Sbjct: 930  ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 980



 Score = 77.4 bits (189), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 106/467 (22%), Positives = 190/467 (40%), Gaps = 73/467 (15%)

Query: 600  GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SFM 655
            G   R  +GV  +A  S L        +  +  G   KCRI+  S +     ++L  S +
Sbjct: 381  GAIFRLKDGVLAYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSII 440

Query: 656  MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
              P     D  +K+G++V G V  + P  ++V V  +   KG +P+ HLAD      +MK
Sbjct: 441  AAPFLRYHD--IKIGTVVKGTVLAIKPFGILVKVGEQ--IKGLVPSMHLAD-----IMMK 491

Query: 716  SVIK---PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
            +  K   PG E   ++L+ D E+  L+++ K +L+ S   L +      P    HG +  
Sbjct: 492  NPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHGVIIR 551

Query: 772  IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + + GC V+F   + G  P+ +       D    +Y GQ V+  +L       R+ LS +
Sbjct: 552  VKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFR 611

Query: 832  QSCCSSTDASFMQEHFLLEE---KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 888
                            LL +   K   ++SS+     ++      IG +++ KV E    
Sbjct: 612  ----------------LLSDSRPKDPGVESSQKKTGAVR------IGQLVDVKVLEKTKT 649

Query: 889  GVVVSFEEHSD-------------VYGFITHHQLAGATVESGSVIQAAILDVAKAERLVD 935
            G+ V+   H+                G + HH L     ++G  +   +L ++++ER + 
Sbjct: 650  GLEVAILPHNTPAFLPTPHLSDHAANGPLLHHWL-----QTGDTLHR-VLCLSQSERHIL 703

Query: 936  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 995
            L  K   +      ++    Q  K   E    +     +   V+ +KE  + +  P    
Sbjct: 704  LCRKPALV------STVEGGQDPKSLSEIQPGM----LLIGFVKCIKEYGVFVQFPSGLS 753

Query: 996  SIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK 1042
             +   ++        P + F+ GQ+V+A V  +  S    R+LL L+
Sbjct: 754  GLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQ--RMLLSLR 798



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 138/321 (42%), Gaps = 40/321 (12%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            + V   +L ++   +++RL LRP           IS   +   + +  + G     G I 
Sbjct: 325  QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y RV H ++ K    ++    +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARVSHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR S+              +  P     +  D+    +V+G V  +   G  + +
Sbjct: 433  ---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLAIKPFGILVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++  G  V  RVL  +P +K++ +TLK +   T+  S
Sbjct: 473  GEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKT-LVTSKLS 531

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
             I        G    G I RV+ YG  +   N ++ GL    ELS  H+ + ET++  G+
Sbjct: 532  LITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIPDPETVFYTGQ 590

Query: 1508 KVKVKILKVDKEKRRISLGMK 1528
             VKV +L  +  K R+ L  +
Sbjct: 591  VVKVAVLSCEPSKERMLLSFR 611



 Score = 47.4 bits (111), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 146/699 (20%), Positives = 271/699 (38%), Gaps = 92/699 (13%)

Query: 756  ASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRA-DLSKTYYVGQSVR 813
            A  + P  ++ G V ++ + G  V   +G    F    KA +  R  +    + VGQ + 
Sbjct: 181  ADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKFKVGQYLT 240

Query: 814  SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 873
              + +V S  G ++LS++ S  SS  A+                       E  W    +
Sbjct: 241  CVVEEVKSNGGVVSLSVEHSEVSSAFAT----------------------EEQSWNLNNL 278

Query: 874  IGSV-IEGKVHESNDFGVVVSFEEH-SDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
            +  + ++ +V +   FG+ ++F      +  F+        +  S   ++A IL V    
Sbjct: 279  LPGLLVKAQVQKVTQFGLQLNFLTFFKGLVDFMHLEPKKMGSYSSNQTVKACILCVHPRT 338

Query: 932  RLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLP 991
            R+V LSL+ +F+   R              R + + LG       +    K    +  L 
Sbjct: 339  RVVRLSLRPIFLHPGRPLT-----------RISYQQLGAVLDDVPVQGFFKNAGAIFRL- 386

Query: 992  EYNHSIGYASVSDYNTQK--FPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 1049
              +  + YA VS  +  K  F  + F  G +    ++   S      LL L K+I     
Sbjct: 387  -KDGVLAYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDY-SQMDELALLSLRKSIIAAPF 444

Query: 1050 SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 1109
                  K      +G++V+  +  IKP  + +K G    G +    + D    +++N   
Sbjct: 445  LRYHDIK------IGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD---IMMKNPEK 495

Query: 1110 NFKIGQTVTARII-----AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
             +  G  V  R++     AK     +KK+ +     K S++T  E G+K   +   V I 
Sbjct: 496  KYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTS---KLSLITCYE-GAKPGLQTHGVIIR 551

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
             +  G + K  N+   L     L  Q            + + +  F+ G+ V   VLS  
Sbjct: 552  VKDYGCIVKFYNDVQGLVPKHELSTQ-----------HIPDPETVFYTGQVVKVAVLSCE 600

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
              K+ + L  R   D         S+      +  G +V  ++  +     GL V I PH
Sbjct: 601  PSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKV--LEKTKTGLEVAILPH 658

Query: 1285 -LYGRVHFTELKNICVSDPLSGY--DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1341
                 +    L +   + PL  +    G  +  +VL +S++ R   H+ L  + +L  +S
Sbjct: 659  NTPAFLPTPHLSDHAANGPLLHHWLQTGDTLH-RVLCLSQSER---HILLCRKPAL--VS 712

Query: 1342 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1401
            +             G+  + + ++ P M++ G+VK +   G F+     L      + +S
Sbjct: 713  TVEG----------GQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMS 762

Query: 1402 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
            D +V +P + F  G+ V  +V +V+   +R+ ++L+ SD
Sbjct: 763  DKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSD 801


>gi|444318932|ref|XP_004180123.1| hypothetical protein TBLA_0D00960 [Tetrapisispora blattae CBS 6284]
 gi|387513165|emb|CCH60604.1| hypothetical protein TBLA_0D00960 [Tetrapisispora blattae CBS 6284]
          Length = 1513

 Score =  353 bits (907), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 269/873 (30%), Positives = 450/873 (51%), Gaps = 108/873 (12%)

Query: 1086 GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP-----DMKKSFLWELSI 1140
               G I++  ++D +           KIG  +T  +I K ++       MKKS + +   
Sbjct: 701  NLRGVIYVGHLSDSRIEQNRATIKKIKIGSKLTGVVIDKDDRTRVFNLSMKKSLIDDAKN 760

Query: 1141 KPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEP 1200
            K   ++ S+I S        +     + GY+  + N    +  +        +L S    
Sbjct: 761  KTLPISFSDIIS--------LDKTTPLHGYIKSISNTGIFVAFNGKFVG--LVLPSYAVE 810

Query: 1201 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT--------VDISNDN 1252
            S   +  + F++ ++VT ++L  ++E +   L L+   +  +D+T        +  S +N
Sbjct: 811  SRDVDINKSFYVNQSVTSYLLRTDEENERFLLTLK---NSKADQTSGAANASAISQSTEN 867

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY-----D 1307
            + T I  GD +  RI K+ SG   +++ +G  + G V F       ++D L+ Y     D
Sbjct: 868  LDT-IKVGDKIPARIVKV-SG-KHVILDLGNKITG-VSF-------ITDALNDYSVSLSD 916

Query: 1308 EGQ-----FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL-EK 1361
            E Q      +   V+ I+   +    V LSLR+                 +   +HL E 
Sbjct: 917  EYQNKLNKTIDATVISINTKAK---KVNLSLRT-----------------NEAKQHLIES 956

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
              D+    +V G +KN+   G FI LS  +DA V +S LSD Y++  +K +   + V G+
Sbjct: 957  HNDIKQGDVVHGLIKNINDSGVFIYLSTNIDAFVPVSKLSDSYLKDWKKFYNPLQHVIGK 1016

Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT- 1480
            V+S E    R+ VTL+ S+        + + S++ VG+I  G +K V  +G+F+ ++NT 
Sbjct: 1017 VVSCES-DDRILVTLRESEV-NGDLKILKDYSSIEVGEIFNGNVKNVTDFGVFVKLDNTV 1074

Query: 1481 NLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1539
            N+ GL H SE+++D + D++  ++ AG++VK  +L+V+ EK+++SLG+K+SYF ND  N 
Sbjct: 1075 NVTGLAHKSEIADDKIPDDLSALFGAGDRVKAIVLRVNAEKKQVSLGLKASYFSNDNYN- 1133

Query: 1540 QMSSEEESDEAIEEVGSYNRSSLLENSSV-AVQDMDMESEDGGSLVLAQIESRASVPPLE 1598
                 EES+E   E  +  ++  ++N+    V + D ES++   +     E+  S  P+ 
Sbjct: 1134 -----EESNEKPMEENTEEKTETIQNADADEVIEFDNESDEDVEME----EAENSKIPIS 1184

Query: 1599 VNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEERE-------QEIRAAEER 1651
             N          G+S + G    A  +D+ N+    + + +  E       ++    E++
Sbjct: 1185 TN----------GLSLSTGFDWTASILDQTNDTEESEDDGDFTEIKKKSKSKKNHIVEDK 1234

Query: 1652 LLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1708
             ++ +  RTP+   +FERL+  +PNSS VW+ YMAF L ++++EKAR IAERAL+ IN R
Sbjct: 1235 TIDINT-RTPESVADFERLIIGNPNSSVVWMNYMAFQLQLSEIEKAREIAERALKIINFR 1293

Query: 1709 EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLA 1768
            EE EKLNIW+A  NLEN +G   EE +  VF+RA QY D   +H  L+ +Y+ +E+   A
Sbjct: 1294 EEAEKLNIWIAMLNLENTFG--TEETLEDVFKRACQYMDSYTIHNKLISIYQMSEKLDRA 1351

Query: 1769 DELLYKMIKKF-KHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAI 1826
             EL     KKF      +W      LL Q   +  +A++  AL SLP+  HI  + + A 
Sbjct: 1352 AELFKTTAKKFGSEKLSIWTSWGDFLLAQNNAQEARAILANALKSLPKRNHIDIVKKFAQ 1411

Query: 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886
            LEF  G A+RGRS+FEG++++ PKR D+W++YLDQEI++ +   +  LFER  +  +  K
Sbjct: 1412 LEFAKGDAERGRSLFEGLIADAPKRIDIWNVYLDQEIKINEKKKVEDLFERVFTRKITRK 1471

Query: 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
            + KF F K+L +E+   +++   YVK KA E+V
Sbjct: 1472 QAKFFFNKWLVFEEGQKDDKMTSYVKAKATEFV 1504



 Score =  184 bits (466), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 276/1172 (23%), Positives = 497/1172 (42%), Gaps = 166/1172 (14%)

Query: 36   DAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKK 95
            DA      +L  + D   FPRGG   LT  E  ++  E  ++    ++   K  K +  +
Sbjct: 19   DATTQPAQSLLKNSDEVSFPRGGSSVLTPLELKQVANEAASDVLFAQK--EKSTKSQSFE 76

Query: 96   TERKANETVDDLGSLFGDGISGKLPRYAN---KITLKNISAGMKLWGVVAEVNEKDLVIC 152
             +R   +      +   +  S +L    N    I  KN+  G  L G +    +KDL + 
Sbjct: 77   NDRPKKKKKITKKNKNSEASSTELDESVNVVEHINFKNLKVGSILLGQITSTTKKDLCVT 136

Query: 153  LPGGLRG---LARAADALDPILDN----------------EIEANEDNLLPTI---FHVG 190
               G+ G   +   +D +  IL++                E   ++ + LP +   F +G
Sbjct: 137  FTDGISGYVPITHISDHITHILEDIDDDMSDEEEKDECEKEENTHDFDELPNLNKYFKIG 196

Query: 191  QLVSCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 247
            Q + C V++   LD   K+  K++I LS+  S++    S E +++   +   VKS+EDHG
Sbjct: 197  QWLRCSVIKNTALDAVSKKHHKKRIELSIEPSVV-NPFSAEDLEKHSTVQCSVKSLEDHG 255

Query: 248  YILHFGLPSFTGFLPRNNLAENSGIDVKPG-LLLQGVVRSIDRTRKV-VYLSSDPDTVSK 305
              L  GL + TGF+ + ++ +   +   PG + L  + +   R+  V    S+    VS 
Sbjct: 256  ATLDLGLENVTGFISKKDVPDFETL--LPGSVFLANIYKKSGRSIIVNTNFSAKNSKVSH 313

Query: 306  CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 365
                     SID +VPG MV      I  NG+        +  + I HL+ TF     K 
Sbjct: 314  IS-------SIDAVVPGQMVDFLCDDISSNGISGKIFGLVSSFIGISHLR-TFTEEELKE 365

Query: 366  DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGL 425
             Y+    +  RI+                LL+       V +    DQ  +V +D  +  
Sbjct: 366  TYSAGSNIKCRII--------------ASLLNKN--DERVLIVSTLDQ--IVSLDNNIAQ 407

Query: 426  LLDIPSTPV-----------STPAYVTISDVAEEEVRKLEKKYKEGSC-----VRVRILG 469
               I + P+           S   +V ++    E++     + K G       ++ R++G
Sbjct: 408  TEAIEAFPIGYTFDSASFLGSDSDFVYLA--LNEDLFGAVHRSKLGDIHISGDIQARVIG 465

Query: 470  FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAVDSFGAIVQ-FPGGVKALCP 527
            +  ++ +       +A +      +D+  G +V G ++I V S G  ++ F G   A  P
Sbjct: 466  YNTIDKIYQLSTDPNALKLKYIRAADIPNGELVTGCEIINVSSDGIELKIFNGQFSAFVP 525

Query: 528  LPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEA--- 583
              H+S+ ++  P +KFK+G+++  R+L V K   I +T KK+LV  +  I+  Y  A   
Sbjct: 526  PLHISDVKLSYPERKFKIGSKIKGRILEVTKRGHIIMTLKKSLVNDENKIVDDYVSAKQL 585

Query: 584  -TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV------ 636
                  T   +   + +GC + F+ G++GF P SE+      +P     +GQ V      
Sbjct: 586  QNKNEKTVATVESFKPNGCLISFFGGLRGFLPNSEISEAFVRKPEQHLRLGQTVIIKILD 645

Query: 637  ----KCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
                + R+++S  AS   +     +  +++ + LV   S++   V   T ++VVV   A 
Sbjct: 646  VDEKRFRVIASCKASNEDS-----QAQKLAIEKLVLGRSIIEVNVVEKTKDSVVVED-AD 699

Query: 693  GYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLINS 748
               +G I   HL+D       AT+ K  IK G +   +++  ++ + +  LS K SLI+ 
Sbjct: 700  SNLRGVIYVGHLSDSRIEQNRATIKK--IKIGSKLTGVVIDKDDRTRVFNLSMKKSLIDD 757

Query: 749  AQQ--LP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
            A+   LP   SD   +   + +HGY+ +I  TG FV F G+  G    S AV+ +  D++
Sbjct: 758  AKNKTLPISFSDIISLDKTTPLHGYIKSISNTGIFVAFNGKFVGLVLPSYAVESRDVDIN 817

Query: 804  KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
            K++YV QSV S +L  + E  R  L+LK S    T  +            + +  S  N 
Sbjct: 818  KSFYVNQSVTSYLLRTDEENERFLLTLKNSKADQTSGA---------ANASAISQSTENL 868

Query: 864  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV--------E 915
              +K      +G  I  ++ + +   V++          FIT   L   +V        +
Sbjct: 869  DTIK------VGDKIPARIVKVSGKHVILDLGNKITGVSFIT-DALNDYSVSLSDEYQNK 921

Query: 916  SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVN 975
                I A ++ +    + V+LSL+T               + K+   E+  D+     V+
Sbjct: 922  LNKTIDATVISINTKAKKVNLSLRT--------------NEAKQHLIESHNDIKQGDVVH 967

Query: 976  AIVEIVKENYLVLSLP-EYNHSIGYASVSDYNTQKFPQKQFLNG-QSVIATVMALPSSST 1033
             +++ + ++ + + L    +  +  + +SD   + +  K+F N  Q VI  V++  S   
Sbjct: 968  GLIKNINDSGVFIYLSTNIDAFVPVSKLSDSYLKDW--KKFYNPLQHVIGKVVSCESDD- 1024

Query: 1034 AGRLLLLLKAISETETSSS-KRAKKKSSYDVGSLVQAEITEIKPLELRLKFG--IGFHGR 1090
              R+L+ L+   E+E +   K  K  SS +VG +    +  +    + +K    +   G 
Sbjct: 1025 --RILVTLR---ESEVNGDLKILKDYSSIEVGEIFNGNVKNVTDFGVFVKLDNTVNVTGL 1079

Query: 1091 IHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             H +E+ DDK  + ++L + F  G  V A ++
Sbjct: 1080 AHKSEIADDK--IPDDLSALFGAGDRVKAIVL 1109



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 122/564 (21%), Positives = 226/564 (40%), Gaps = 91/564 (16%)

Query: 443  SDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS---------AFEGLVFTH 493
            S+++E  VRK E+  + G  V ++IL             KAS         A E LV   
Sbjct: 619  SEISEAFVRKPEQHLRLGQTVIIKILDVDEKRFRVIASCKASNEDSQAQKLAIEKLVLGR 678

Query: 494  SDVKPGMVVKGK--VIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG---KKFKVGAE 548
            S ++  +V K K  V+  D+          ++ +  + H+S+  I +     KK K+G++
Sbjct: 679  SIIEVNVVEKTKDSVVVEDA-------DSNLRGVIYVGHLSDSRIEQNRATIKKIKIGSK 731

Query: 549  LVFRVLGV--KSKRITVTHKKTLV---KSK-LAILSSYAEATDRLI-THGWITKIEKHGC 601
            L   V+    +++   ++ KK+L+   K+K L I  S   + D+    HG+I  I   G 
Sbjct: 732  LTGVVIDKDDRTRVFNLSMKKSLIDDAKNKTLPISFSDIISLDKTTPLHGYIKSISNTGI 791

Query: 602  FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RIMSSIPASRRIN 651
            FV F     G    S        + +  ++V Q V            R + ++  S+   
Sbjct: 792  FVAFNGKFVGLVLPSYAVESRDVDINKSFYVNQSVTSYLLRTDEENERFLLTLKNSKADQ 851

Query: 652  LSFMMKPTRVSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
             S     + +S+     D +K+G  +   +  V+   V++  +    +  +  T+ L D+
Sbjct: 852  TSGAANASAISQSTENLDTIKVGDKIPARIVKVSGKHVILD-LGNKITGVSFITDALNDY 910

Query: 708  L-----EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN 762
                  E+   +   I        ++ ++ ++  + LS + +   + Q L    + I   
Sbjct: 911  SVSLSDEYQNKLNKTIDA-----TVISINTKAKKVNLSLRTN--EAKQHLIESHNDIKQG 963

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             VVHG + NI ++G F+     +  F P SK  D    D  K Y   Q V   ++   S+
Sbjct: 964  DVVHGLIKNINDSGVFIYLSTNIDAFVPVSKLSDSYLKDWKKFYNPLQHVIGKVVSCESD 1023

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
              RI ++L++S  +  D   ++++  +E                       +G +  G V
Sbjct: 1024 -DRILVTLRESEVNG-DLKILKDYSSIE-----------------------VGEIFNGNV 1058

Query: 883  HESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVESGSVIQAAILDVAKAERLV 934
                DFGV V  +   +V G     ++A         A   +G  ++A +L V   ++ V
Sbjct: 1059 KNVTDFGVFVKLDNTVNVTGLAHKSEIADDKIPDDLSALFGAGDRVKAIVLRVNAEKKQV 1118

Query: 935  DLSLKTVFIDRFREANSNRQAQKK 958
             L LK  +   F   N N ++ +K
Sbjct: 1119 SLGLKASY---FSNDNYNEESNEK 1139



 Score = 45.8 bits (107), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 105/220 (47%), Gaps = 12/220 (5%)

Query: 1319 ISRTVRGTFHVELSLRSSLDGMSSTNS-SDLSTDVDTPGKHLEKIEDLSPNMIVQGY-VK 1376
            + R+  G  H+   +++ + G ++ +    LSTD +       +  D+    +V G  + 
Sbjct: 445  VHRSKLGDIHISGDIQARVIGYNTIDKIYQLSTDPNALKLKYIRAADIPNGELVTGCEII 504

Query: 1377 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            NV+S G  + + + +  A V   ++SD  +  PE++F IG  + GR+L V   +KR  + 
Sbjct: 505  NVSSDGIELKIFNGQFSAFVPPLHISDVKLSYPERKFKIGSKIKGRILEV---TKRGHII 561

Query: 1436 LKTSDSRTASQSEI--NNLSNLHVGDIVIGQIKRVESY---GLFITIENTNLVGLCHVSE 1490
            +    S    +++I  + +S   + +     +  VES+   G  I+     L G    SE
Sbjct: 562  MTLKKSLVNDENKIVDDYVSAKQLQNKNEKTVATVESFKPNGCLISFFG-GLRGFLPNSE 620

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SE  V   E   R G+ V +KIL VD+++ R+    K+S
Sbjct: 621  ISEAFVRKPEQHLRLGQTVIIKILDVDEKRFRVIASCKAS 660


>gi|402086176|gb|EJT81074.1| hypothetical protein GGTG_01061 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1795

 Score =  353 bits (906), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 385/1443 (26%), Positives = 671/1443 (46%), Gaps = 145/1443 (10%)

Query: 544  KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GCF 602
            K+G  L+  V G+K K + V  K+      L IL S +     ++    + K+E   G F
Sbjct: 423  KLGISLLPHVTGLKPKLVAVQGKED--AHPLTILPSSS-----MVEECVVRKVEPGIGLF 475

Query: 603  VRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL--SF 654
            V     GV GF   S +    +D   E S  Y  G   + R++  S++     ++L  S 
Sbjct: 476  VDVGVEGVPGFVHISRVKDGKVDALYESSGPYKTGSTHRSRVIGYSALDGVFLVSLEKSV 535

Query: 655  MMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLE 709
            + +P    ED  V +G +V+  ++  VV  + V  ++  +A+G + G +P  HLAD  L+
Sbjct: 536  LERPYLRIED--VPVGDVVTVTIEKLVVKEDGVSGLIVRLAEGIT-GFVPEMHLADVRLQ 592

Query: 710  HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
            H    +   K G +   ++L  D+    L L+ K +L+NS  +       +       G 
Sbjct: 593  HP---EKKFKEGLKVKARVLSADSAKHQLRLTLKKTLLNSETKPIKAFDEVSVGQQFPGT 649

Query: 769  VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
            +  I+  G FV+F G L GF P S+  +    D ++ + VGQ V  ++++V+    R+ +
Sbjct: 650  IVKIMPIGAFVQFYGALRGFMPISEMSEAYIRDPNEHFRVGQVVNVHVVEVDPAAHRLIV 709

Query: 829  SLKQSCCSSTDASFMQEHFLLEE-KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 887
            S     C    A  M++   L+  K+  L S+K        +   ++GS+++        
Sbjct: 710  S-----CKDPAAFGMEKRLALQALKLGQLVSAKVAQKSEDEISLELVGSLLKA------- 757

Query: 888  FGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA-AILDVAKAERLVDLSLKTVFIDRF 946
               V+     +D     + +Q A   +  G  +    +L+  +  R V LSLK   +   
Sbjct: 758  ---VLRCSHMTDKSA--SKNQSALNKIRVGQTLDGLVVLEKDEDRRAVVLSLKPSLV--- 809

Query: 947  REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS--------LPEYNHSIG 998
                   +A K  R   A +D  V   V   +  +    + +         LP    + G
Sbjct: 810  -------KASKDGRLLTALQDAKVGSLVQGFIRNITATAVFVQFAGNLTALLPRSLMTAG 862

Query: 999  YASVSDYNTQKFPQKQFLNGQSVIAT--VMALPSSSTAGRLLLLLKAISETETSSSKRAK 1056
              +   +   +  Q   +   SV     V+A+P +    +      A      +      
Sbjct: 863  MQAQEGFGL-RLSQPILVKVHSVDDKRLVVAMPDAEPPSKTDKPSSASKPIANAIDPTIN 921

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIG 1114
                  VG + +A I+ +K  +L +  G    GR+ ++EV D  D+    ++    F   
Sbjct: 922  STDDITVGKITKARISSVKKTQLNVSLGDNIQGRVDVSEVFDSWDEIEDPKDPLQKFAAN 981

Query: 1115 QTVTARIIAKSNKPDMKKSFL----------WELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
            Q +  R+I   +  + +  FL           EL+ KPS L  +  G K L  E D+   
Sbjct: 982  QIIDVRVIGVHDARNYR--FLPFSHRTAHSVLELTAKPSSLRETARGYKPLALE-DIKPD 1038

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
                 +V   D     + +S  ++ ++   + + + S  ++ ++ F +G A+   V+++ 
Sbjct: 1039 SNWLSFVNNNDGNCLWVNLSPAVRGRIRAAEVSDDSSLSKDLRQHFPVGSALRTRVVTVK 1098

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
             E   L L  R  +        ++  D   T +H       R++K+      +++QI   
Sbjct: 1099 SENGHLDLSARSARPNERLTWDELEKD---TVMH------ARVTKVNDR--QVLIQISDS 1147

Query: 1285 LYGRVHFTELKN-ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
            + G VH  +L +    ++PL  Y +   ++  V+ + R+ +    V LS R         
Sbjct: 1148 VSGPVHMVDLSDDYDQANPLR-YSKNDIIRVAVVSVDRSNK---KVRLSAR--------- 1194

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
             S  L++ +    + +  +  +    I++G+VKNV+ KG F+ L   +DA V +++LSD 
Sbjct: 1195 ESRVLNSALPVKDREITAVSQIEVGSIIRGFVKNVSDKGLFVTLG-GVDAFVRIADLSDA 1253

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
            Y++  +  F + +LV GRVL+V P + +V+++LK S +       +   ++   G +V G
Sbjct: 1254 YLKEWKDHFQVDQLVKGRVLAVNPATGQVQMSLKAS-AVDEDYKPLPGFADFKKGQVVTG 1312

Query: 1464 QIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            ++++V  +G FI ++ + N+ GLCH +E+++  V +   +Y+ G+ VK  +L VD  KR+
Sbjct: 1313 KVRKVADFGAFILVDKSANVSGLCHRTEMADKPVKDATRLYKEGDSVKAIVLGVDAGKRK 1372

Query: 1523 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESED--- 1579
            I+LG+K SYF++   +  M  +++ +E +    S +  S         +D DME  D   
Sbjct: 1373 ITLGLKPSYFEDADSDEDMDGDDDDEEDLASDDSGDSGS---------EDEDMEDADSVV 1423

Query: 1580 ---GGSLVLAQIESRASVPPLEVNLDDEQ-----PDMD-NGISQNQGHTDEAKTIDEKNN 1630
               GG  V    +            D E      P +D  G   + G  DEA  ++E ++
Sbjct: 1424 LFTGGEGVSLDEDGSDDEGDDTSMADAEDGDAPLPGLDAGGFDWSGGGLDEA--VNEADD 1481

Query: 1631 RHA-KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1689
              A  KK K+ ++ E+       L+   P+   +FERL+   PNSS +WI Y+AF + ++
Sbjct: 1482 SGAVAKKSKKRKKVEVEVDRTGDLDAKGPQAASDFERLLLGQPNSSSLWIAYVAFQMQVS 1541

Query: 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1749
            ++ KAR IAERA+ TIN+REE EKLN+W+AY NLE  YG   +E + +VF+RA QY D +
Sbjct: 1542 ELSKAREIAERAINTINVREETEKLNVWIAYLNLEVAYGT--DETLNEVFRRACQYNDEQ 1599

Query: 1750 KVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQ 1806
            +V+  L  +  ++ +N   DEL   M+KKF   S  VWL     L  L    E  +A++ 
Sbjct: 1600 EVYERLTSICIQSGKNDKVDELFQTMVKKFGSKSPDVWLNYAHFLYTLGGSAERGRALLP 1659

Query: 1807 RALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1864
            RAL SL    H+   S+ A LEF+   G  +RGR++FEG+L+ YPKR DLW+  LD E  
Sbjct: 1660 RALKSLDSRAHLTLTSKFAALEFRCAGGEPERGRTVFEGLLATYPKRFDLWNQLLDLETS 1719

Query: 1865 LGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
              D D  ++R +FER   +  L P++ K  F+++ ++E++ G+ +  E V  KA  +  S
Sbjct: 1720 AADKDANVVRDVFERGTKVKGLKPRQAKAWFQRWAKWEEANGDAKSREKVTAKAKGWASS 1779

Query: 1922 TLA 1924
              A
Sbjct: 1780 AEA 1782



 Score =  191 bits (486), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 328/1422 (23%), Positives = 588/1422 (41%), Gaps = 144/1422 (10%)

Query: 4    SSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLA---LPP-----DDDVPVFP 55
            SS+ +  K     P   +A      NSK +   A + +  +    PP      +D P+FP
Sbjct: 14   SSQATPAKRVSGEPPSKRAKSQAASNSKDKTAPAQDDKTTSHANAPPVISRLKEDEPMFP 73

Query: 56   RGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
            RGGG  L+  E  +I   A+ D  FE       +   + +K  +    +           
Sbjct: 74   RGGGSVLSPLEHKQIQIQAKKDVLFE------QESGAQARKPGQPTKKKIKTTKPKAGAT 127

Query: 114  GISGKLPRYAN--KITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALD 168
              + K P       +  K +  G  + G V+++   +L + LP  L G   +   ++ L 
Sbjct: 128  SYTAKDPDAVKVESLNFKRLVKGSLVLGQVSKIGPLELELSLPNNLVGHVPITAVSEHLT 187

Query: 169  PILDNEIEANEDN----------LLPTIFHVGQLVSCIVLQLDDDKKEI---GKRKIWLS 215
              L+++   +E+            L  +F VGQ V   V    DD        KR+I LS
Sbjct: 188  KKLESDAATSEEEQDDADDGGDSDLTALFSVGQFVRAYVTSTVDDSGSASAKAKRRIELS 247

Query: 216  LRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGI 272
            L   L   GL    + E   +   + S+EDHGY++  G+      GFLP+  +  N    
Sbjct: 248  LYPELANLGLGESDIVENSTVAGSILSVEDHGYVVSLGIQDSQLRGFLPKKEVDSNIPST 307

Query: 273  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
             + PG +   +V     +  V  LS     +           +I+  +PG  V   V  +
Sbjct: 308  RLVPGCVHMFLVSGRRASGTVSRLSLLSSNLGNLKLYPASAKTINTFLPGTAVEVLVSDV 367

Query: 333  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT--SRAVGLT 390
                +    + +   T D+ H        + +  Y    K+ ARI+   P   S  +G++
Sbjct: 368  SSRSLAGKVIGHLDVTADVIHSGCGPDGLDLEKTYKVGSKIKARIICTFPAADSPKLGIS 427

Query: 391  LNPYLL------------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 438
            L P++              +  P + +    + ++  V +V+ G+GL +D+    V  P 
Sbjct: 428  LLPHVTGLKPKLVAVQGKEDAHPLTILPSSSMVEECVVRKVEPGIGLFVDVGVEGV--PG 485

Query: 439  YVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 495
            +V IS V + +V  L +    YK GS  R R++G+  L+G+    L+ S  E       D
Sbjct: 486  FVHISRVKDGKVDALYESSGPYKTGSTHRSRVIGYSALDGVFLVSLEKSVLERPYLRIED 545

Query: 496  VKPGMVV----KGKVIAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
            V  G VV    +  V+  D   G IV+   G+    P  H+++  +  P KKFK G ++ 
Sbjct: 546  VPVGDVVTVTIEKLVVKEDGVSGLIVRLAEGITGFVPEMHLADVRLQHPEKKFKEGLKVK 605

Query: 551  FRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             RVL   S +  + +T KKTL+ S+   + ++ E +      G I KI   G FV+FY  
Sbjct: 606  ARVLSADSAKHQLRLTLKKTLLNSETKPIKAFDEVSVGQQFPGTIVKIMPIGAFVQFYGA 665

Query: 609  VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 666
            ++GF P SE+      +P+  + VGQVV   ++   PA+ R+ +S         E  L  
Sbjct: 666  LRGFMPISEMSEAYIRDPNEHFRVGQVVNVHVVEVDPAAHRLIVSCKDPAAFGMEKRLAL 725

Query: 667  --VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV---IKPG 721
              +KLG LVS  V   + + + + ++     K  +   H+ D  + A+  +S    I+ G
Sbjct: 726  QALKLGQLVSAKVAQKSEDEISLELVGS-LLKAVLRCSHMTD--KSASKNQSALNKIRVG 782

Query: 722  YEFDQLLVL--DNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGC 777
               D L+VL  D +   ++LS K SL+ +++  +L +        S+V G++ NI  T  
Sbjct: 783  QTLDGLVVLEKDEDRRAVVLSLKPSLVKASKDGRLLTALQDAKVGSLVQGFIRNITATAV 842

Query: 778  FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL------- 830
            FV+F G LT   PRS    G +A       + Q +   +  V+ +  R+ +++       
Sbjct: 843  FVQFAGNLTALLPRSLMTAGMQAQEGFGLRLSQPILVKVHSVDDK--RLVVAMPDAEPPS 900

Query: 831  ---KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE-GFIIGSVIEGKVHESN 886
               K S  S   A+ +       + I + + +K   S +K  +    +G  I+G+V  S 
Sbjct: 901  KTDKPSSASKPIANAIDPTINSTDDITVGKITKARISSVKKTQLNVSLGDNIQGRVDVSE 960

Query: 887  DFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVF-I 943
             F      E+  D       +Q          +I   ++ V  A+  R +  S +T   +
Sbjct: 961  VFDSWDEIEDPKDPLQKFAANQ----------IIDVRVIGVHDARNYRFLPFSHRTAHSV 1010

Query: 944  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASV 1002
                   S+ +   +  K  A +D+       + V     N L ++L P     I  A V
Sbjct: 1011 LELTAKPSSLRETARGYKPLALEDIKPDSNWLSFVNNNDGNCLWVNLSPAVRGRIRAAEV 1070

Query: 1003 SDYNT-QKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSY 1061
            SD ++  K  ++ F  G ++   V+ + S +  G L L         ++ S R  ++ ++
Sbjct: 1071 SDDSSLSKDLRQHFPVGSALRTRVVTVKSEN--GHLDL---------SARSARPNERLTW 1119

Query: 1062 D---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVT 1118
            D     +++ A +T++   ++ ++      G +H+ +++DD        +S   I + V 
Sbjct: 1120 DELEKDTVMHARVTKVNDRQVLIQISDSVSGPVHMVDLSDDYDQANPLRYSKNDIIR-VA 1178

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDN 1176
               + +SNK          LS + S +  S   +  + +     + +G  + G+V  V +
Sbjct: 1179 VVSVDRSNKK-------VRLSARESRVLNSALPVKDREITAVSQIEVGSIIRGFVKNVSD 1231

Query: 1177 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
            +   +T+        F+  +    + L+E++  F + + V G VL++N     +++ L+ 
Sbjct: 1232 KGLFVTLG---GVDAFVRIADLSDAYLKEWKDHFQVDQLVKGRVLAVNPATGQVQMSLKA 1288

Query: 1237 FQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
                     VD     +  F    +G +V G++ K+      ++V    ++ G  H TE+
Sbjct: 1289 -------SAVDEDYKPLPGFADFKKGQVVTGKVRKVADFGAFILVDKSANVSGLCHRTEM 1341

Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
             +  V D    Y EG  VK  VL +     G   + L L+ S
Sbjct: 1342 ADKPVKDATRLYKEGDSVKAIVLGVD---AGKRKITLGLKPS 1380


>gi|191256845|ref|NP_001122095.1| programmed cell death 11 [Xenopus laevis]
 gi|189441690|gb|AAI67486.1| LOC779090 protein [Xenopus laevis]
          Length = 1812

 Score =  353 bits (906), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 354/1379 (25%), Positives = 633/1379 (45%), Gaps = 140/1379 (10%)

Query: 131  ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLLPT 185
            +S GM   G V    + +L + LP  L G  +A    DA   ++  ++E ++  + L+P 
Sbjct: 76   LSVGMLFLGCVKRTKDFELTVSLPYCLTGYIQATNICDAYTNLISEQVEKDDPLEALVPL 135

Query: 186  --IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 243
              ++  G LV C +  L+      G   + LS+    + K L+  +++ GMVL+  V S+
Sbjct: 136  SELYSPGMLVRCAISSLETTAS--GFPSVKLSVNPKHVNKALNTGSIKTGMVLSGCVSSV 193

Query: 244  EDHGYILHFGLPSFTGFLPRNNLA-----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 298
            EDHGY++  G+     FLPR            G  ++ G  L  VV  +    K+V LS 
Sbjct: 194  EDHGYLVDIGVAGTKAFLPRQKAQLFLSQAGQGSLLRVGEYLNCVVEEVKNEGKIVRLSI 253

Query: 299  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              + V+  +    +  +++ L+PG++   +++ ++ N + LSFL+ +TG VD  H +   
Sbjct: 254  IQNDVASALATVEQNWNLNNLLPGLVFKAQIEKVMHNNITLSFLSSYTGFVDFLHFE--- 310

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRAPP-SHVKVGDIYDQSK 415
                    Y + ++V A IL++DP+++ + LTL    L   N  P  +   VG + D   
Sbjct: 311  --PKKIGSYKEGQEVKACILWLDPSTKTIRLTLRQCFLQPGNTLPQLTSDWVGSVLDNCV 368

Query: 416  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
            V  + +  G + ++    +       +S   +       +K+K+G+  + RI  F  ++ 
Sbjct: 369  VQTLFKNAGAVFELEGGNLGFAFKHHLSASKQPHF----EKFKKGTTHKGRITDFSPMDE 424

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
            +    LK      L   H D++PG V++G V  +++ G +VQ    +  L P  H ++  
Sbjct: 425  MHILSLKEKVITNLFLRHEDIQPGQVLEGTVKCMEAVGMVVQITDHLTGLVPKLHFADVL 484

Query: 536  IVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
            +  P KK+ +G ++  +VL V +  +++ +T K+TL+KS L +L+SY +A   LITHG+I
Sbjct: 485  LKHPEKKYIIGNKIKCKVLTVVTCERKLILTRKRTLMKSTLPVLASYEDAQPGLITHGFI 544

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
              I+ +GC V+FYN VQG APR ELG L         ++ GQV+K +++   P ++++ L
Sbjct: 545  VAIKDYGCLVKFYNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVQVLECNPQTQQLLL 604

Query: 653  SFMMKPTRVSEDD--------LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            SF +     +E +         VKL  G LV   V   T   V V V+ +  S   IP  
Sbjct: 605  SFRITEEGHTEQEQRFLKKIKAVKLDVGKLVDIRVLSKTDKGVNVLVLPE-ESPAFIPKM 663

Query: 703  HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH 760
            HL+DH+ +  ++   ++ G +    + L +   + +L+ K  LI+S ++       S + 
Sbjct: 664  HLSDHVSNCELLWHTLQEGDDIPGAMCLSSLKGHSILTKKSLLISSVEKGSCVKVISEVQ 723

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
                + G+V +I+  G FV F   L G  P S+  D    ++   +  G +V + ++ ++
Sbjct: 724  TGMHLTGFVKSIMPYGVFVEFPYGLFGLVPMSEISDKFVTNIRDHFVEGNTVVATVIKMD 783

Query: 821  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ------SSKHNGSELKWVEGFII 874
             E  R  L+LK S C+  D S ++  FLL +  + LQ      + K +  +   +   I 
Sbjct: 784  EEKKRFLLTLKMSECAPDDYS-IEGLFLLSQCFSELQLMKGLLARKGDPEDELSIYTLIA 842

Query: 875  GSVIEGKVHESNDFGVVVSFEEHSDVYGF----ITHHQLAGATVESGSVIQAAILDVAKA 930
            G  +   V  + + G  V F   S + G      T + +    + +G  ++A +L V   
Sbjct: 843  GQKLTLVVENAEENG-PVQFSAGS-ISGAQTVSATQYHIGDKALVAGQKVKAVVLHVDML 900

Query: 931  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 990
               V +SL    +               K+K+   K    H   +A V+ V E + V+SL
Sbjct: 901  TLHVHVSLNQTLL---------------KKKQNVPKMNSSH---SADVQHVAEEFAVVSL 942

Query: 991  PEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL-KAISETE 1048
             +  H I     S  N T +F  ++   G++ I+ ++   + +  G LL +  KA S+T 
Sbjct: 943  ADSAHLIAVPVSSHLNDTFRFESEKLKVGET-ISVILKTTTVNEHGLLLAVQNKAASKTS 1001

Query: 1049 ------TSSSKRAKKKSSY--DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
                  T S+ R +   S+   +G LV   +  IKP ++ +       G IH++++ D+ 
Sbjct: 1002 KNLGRTTQSAMRVRGAISHGLKIGDLVTGTVKSIKPTQVTVSINDNVFGFIHVSQIMDET 1061

Query: 1101 SNVVENLFSNFKIG--QTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVS 1148
                +  F   K+   Q VT R+I     K+++      PD   S + ELS+ P ++   
Sbjct: 1062 P---QGCFPTSKLNPKQEVTCRVIGGREVKTHRYLPITHPDFIHS-VPELSLLPELINTD 1117

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQEF 1206
             +      +    + G +VT YV K + E   L   I+  ++ ++ +L  +  P  L+  
Sbjct: 1118 NVPKPRALK--TFNPGDKVTCYVNKFNTETKYLEVEITPEIRGRIELLLLSQTPKNLKRP 1175

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            ++ F  G+A++  V+  +   K L L L     GI               + EG +    
Sbjct: 1176 EKLFKNGQALSATVVGPDAVHKHLCLSL----TGIHS-------------LEEGAVTVAC 1218

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGT 1326
            ++K++ G  GL + +     G  +   L +      L  +  G+FV+C +L  S+ V+  
Sbjct: 1219 VTKVVKG-SGLTLSLPFGKTGNANMFHLCDKYAEASLEKFTPGKFVRCAILSNSKIVK-- 1275

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
                +SLR      S  N    S+ VD   + +  I+ L    +V G+V  +T +KG F 
Sbjct: 1276 ----VSLRQ-----SRVNQQAQSSAVD---EDIASIDSLEEGQLVSGFVSAITENKGVFF 1323

Query: 1386 MLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
             LS  +   +   N++  +V  P       P G L+  +VLS++P  K VE++L  +D+
Sbjct: 1324 RLSSFIVGHIQFQNVTSYFVYEPSAYSNYIPEGTLLTAKVLSIDPDKKHVELSLLPTDT 1382



 Score =  277 bits (708), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 134/265 (50%), Positives = 187/265 (70%), Gaps = 3/265 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P++ D+F+RLV SSP+SS +W++YMAF L   ++EKAR +AERAL+TI+ REE EKLN+W
Sbjct: 1543 PQSADDFDRLVISSPDSSILWLQYMAFHLHATEIEKARVVAERALKTISFREEQEKLNVW 1602

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            VA  NLEN YG   EE++ K F+RA+QY +P KV   L  +Y ++E+ K A++L   M+K
Sbjct: 1603 VALLNLENMYGT--EESLTKAFERAVQYNEPLKVFQQLADIYIKSEKFKQAEDLYNTMLK 1660

Query: 1778 KFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
            +F+    VW++    LLKQ Q +G   ++QRAL SLP   H+  IS+ A LEF+ G  +R
Sbjct: 1661 RFRQEKSVWIKFATFLLKQGQGDGTHKLLQRALKSLPEKDHVDVISKFAQLEFQLGDTER 1720

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
             +++FE  LS YPKRTDLWS+Y+D  ++ G    +R +FER I LSL  KK+KF FK+YL
Sbjct: 1721 AKALFESTLSSYPKRTDLWSVYIDMMVKHGSQKEVRDIFERVIHLSLAAKKIKFFFKRYL 1780

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVES 1921
            EYEK  G  E ++ VK+KA++YVES
Sbjct: 1781 EYEKKHGSTESVQAVKEKALQYVES 1805



 Score = 45.1 bits (105), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
            S +  +S +  G  + G +K +  YG+F+      L GL  +SE+S+  V NI   +  G
Sbjct: 714  SCVKVISEVQTGMHLTGFVKSIMPYGVFVEFP-YGLFGLVPMSEISDKFVTNIRDHFVEG 772

Query: 1507 EKVKVKILKVDKEKRRISLGMKSS 1530
              V   ++K+D+EK+R  L +K S
Sbjct: 773  NTVVATVIKMDEEKKRFLLTLKMS 796


>gi|58267098|ref|XP_570705.1| rRNA processing-related protein [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57226939|gb|AAW43398.1| rRNA processing-related protein, putative [Cryptococcus neoformans
            var. neoformans JEC21]
          Length = 1484

 Score =  352 bits (903), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 221/683 (32%), Positives = 376/683 (55%), Gaps = 41/683 (6%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN-ICVSDPLSGYDEGQFVKCK 1315
            I  G I+ G + +  S   G +VQ+  +L GRVH  +  + + ++        G+ VKC 
Sbjct: 808  IEVGQIITGTVQEQTSQ--GYMVQLPNNLRGRVHPCDSSDDLALAAGHGPLTVGEEVKCY 865

Query: 1316 VLEISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            VL+++R+ R    ++LS R S + G  +    +++T           ++DL     V+G 
Sbjct: 866  VLDVNRSKRA---IDLSTRLSRVQGKENVVDREINT-----------VDDLKEGESVRGL 911

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            VKN+   G F+ L R + A++++  L D YV+  +  F I +LV+G++LS+ P S  +E+
Sbjct: 912  VKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWKSRFEINQLVSGKILSINPGSNSIEM 971

Query: 1435 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
            TL+ + S++A ++ + +LS+   G  V+  +++VE+YG+F+ IE +N+ GLCH SE++++
Sbjct: 972  TLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEITDN 1031

Query: 1495 HVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAI 1551
               ++      +R G++VK KI+ +D EK +IS G+K+SYF  + +  + S +E+ +   
Sbjct: 1032 RKADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKASYFGEEFEGGEKSEDEDDEVDE 1091

Query: 1552 EEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNG 1611
            E    +N       S         E ED  +L +   E  A+    +    + +P     
Sbjct: 1092 ENDERFNEGDQEMESDAGESGEGQEHEDEEALEIDGGEEEATSDEEDNAPQNFKPAPKTA 1151

Query: 1612 ISQNQGH--TDEAKTIDEKNNRH----------AKKKEKEEREQEIRAAEERLLEKDAPR 1659
            ++   G   T EA     +++            AK K K +       A         P 
Sbjct: 1152 LNLGAGFDWTGEAPAAAPESDDESDSDEEAVAPAKSKGKSKAVDLTATAP-----SSRPS 1206

Query: 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1719
            +  E+ER + +SPNSSF+WI+YM+F L + ++EKAR I  +AL+ I+ REE EKLN+W+A
Sbjct: 1207 STGEYERALLASPNSSFLWIQYMSFHLQLHEIEKARKIGRQALEKISYREEEEKLNVWMA 1266

Query: 1720 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1779
              NLE  +G     A  KVF+ A QY D + V++      +   +++  +EL  K++KKF
Sbjct: 1267 LINLEIAFGTV--SATEKVFEEAAQYNDKRTVYMRYAEALQVAGKDEALEELFKKIVKKF 1324

Query: 1780 KHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1838
                + W R  +  L K   E  +A++ R++ SL + KH++ I + A+LEFK G A+RG+
Sbjct: 1325 SAYPESWTRFAEFYLNKGDVEAARALLPRSMKSLDKSKHVETIEKMALLEFKQGDAERGK 1384

Query: 1839 SMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898
            ++FEG++  +PKR DLW +Y+DQ  ++GD+  +RGL +RA+   L  KK KFLFKK+L  
Sbjct: 1385 TLFEGLVDRFPKRLDLWGVYIDQVAKVGDIQGVRGLMDRALEQKLTSKKAKFLFKKWLTI 1444

Query: 1899 EKSVGEEERIEYVKQKAMEYVES 1921
            E+ +G+    +  K +A E+VE+
Sbjct: 1445 EQRIGDAAGQDKAKTRAREWVEA 1467



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 215/908 (23%), Positives = 378/908 (41%), Gaps = 116/908 (12%)

Query: 4   SSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLT 63
           SS+K+Q +SS   P+   A  +  +N                    D   FPRGGG SLT
Sbjct: 14  SSKKTQNESSSTAPRPAPAFTSTLQN--------------------DETDFPRGGGSSLT 53

Query: 64  QRERDEIHAE--VDAEFEAVERGLHKKNKKKKKKTERKA-----NETVDDLGSLFGDGIS 116
             E  ++  E   +AE EA  +   K  K+K++ ++R+A     NE          D I 
Sbjct: 54  AFEFKQVREEGRREAENEAKHQA-SKGEKRKRQMSDRQAKRLKKNEDAKKKEERDKDNIR 112

Query: 117 GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN 173
            ++  Y      K +  G  +   V  +    L++ LP  L     +   ++ L  +L  
Sbjct: 113 VEILNY------KRLVPGTHVLARVHTILPLHLILSLPNNLLAHVPITEISNTLTQLLTA 166

Query: 174 E------------IEANEDNLLPTIFHVGQLVSCIVLQLDDDKKE--------IGKRKIW 213
           E             + +    L  +F  GQ V   VL L     +            K+ 
Sbjct: 167 EEAMAVDEGEEESDDESSAPDLAQLFVPGQYVHAKVLTLYPTASQSFISQYPITETTKLA 226

Query: 214 LSLRLSLLYKGLSLETVQE----GMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRN 264
             + L+L+ + ++ E  ++    G  L   VKS ED G+I+  GL      S  GF+ ++
Sbjct: 227 SRVELTLIPEKVNSEVAKKDLETGYFLVGEVKSEEDKGWIVGVGLNTQGGSSVEGFVSKD 286

Query: 265 NLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 323
            +A+      + PG LL   + SI    +V +LS +   +++    ++   ++  +VPG 
Sbjct: 287 EVAKFVPAQALIPGQLLPATISSIAAGGRVAHLSLNQQDITRSQISEVS--TVGSIVPGH 344

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---- 379
            V+  + +++ +G+ +    +F GT+D+ HL       + +N Y   KK+ AR+++    
Sbjct: 345 SVNALITAVVPSGLNVKVAGFFDGTIDLAHL--PLGEDDIENKYKIGKKIRARVIYDNLA 402

Query: 380 VDPTSRAVGLTLNPYLLHNRAPPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIP 430
            +P S A  L+  P++L+  +P            + +G +Y   KV RV    G+++   
Sbjct: 403 ANPHSFA--LSALPHVLNFTSPTQEGDNTPLELAIPIGKVYQSVKVTRVLNDWGVMV--- 457

Query: 431 STPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
            T      +V IS +A+E +  L     ++K G+  R R++G   ++G+     + S   
Sbjct: 458 RTQDGLEGFVHISHLADERIPVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQSVLS 517

Query: 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
            L     ++K G  +KG +  +      V   G V  +    H ++  +  P K+FK   
Sbjct: 518 QLFMQVDELKVGQQLKGTIRRLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEG 577

Query: 548 ELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            +  RVL ++    R+ +T KKT ++S LA+   + +     +T G + KI   G  V  
Sbjct: 578 SVKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFEDLKVGEVTLGSVLKIVDKGVIVEL 637

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           + G++ F P SE         S  +++G+ +  R+++   ++ RI +S            
Sbjct: 638 FAGLKAFMPHSECSQTHIKNLSEAFYIGKPLTVRVITVDASASRIVVSAKQAAPTAPATA 697

Query: 666 LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPG 721
             KL  G  VSG V  V    VVV +   G +   +   +L++   H  +  ++  +K G
Sbjct: 698 AEKLEVGEAVSGTVSQVHTEQVVVKLDGNGLT-ALLSLSNLSNQ-RHTGIEELRRSLKEG 755

Query: 722 YEFDQLLVLD-NESSNLL-------LSAKYSLINSAQQLPSDAS-------HIHPNSVVH 766
            + D L+V+  N  S L+       ++AK        + PS  S        I    ++ 
Sbjct: 756 EKIDDLVVVSKNPVSGLIIVNIKKTITAKKEKAKKEDKAPSGISAHVKAIDAIEVGQIIT 815

Query: 767 GYVCNIIETGCFVRFLGRLTG-FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
           G V      G  V+    L G   P   + D   A       VG+ V+  +LDVN     
Sbjct: 816 GTVQEQTSQGYMVQLPNNLRGRVHPCDSSDDLALAAGHGPLTVGEEVKCYVLDVNRSKRA 875

Query: 826 ITLSLKQS 833
           I LS + S
Sbjct: 876 IDLSTRLS 883



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 121/531 (22%), Positives = 220/531 (41%), Gaps = 89/531 (16%)

Query: 373  VNARILFVDPTSRAVGLTLN-PYLLHNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLD 428
            V AR+L+++PT   V LTL   +L  + A P     +KVG++   S +  VD+G+     
Sbjct: 579  VKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFEDLKVGEVTLGSVLKIVDKGV----- 633

Query: 429  IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL---KASA 485
            I        A++  S+ ++  ++ L + +  G  + VR++    ++  A+ I+   K +A
Sbjct: 634  IVELFAGLKAFMPHSECSQTHIKNLSEAFYIGKPLTVRVI---TVDASASRIVVSAKQAA 690

Query: 486  FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE---------FE 535
                      ++ G  V G V  V +   +V+  G G+ AL  L ++S            
Sbjct: 691  PTAPATAAEKLEVGEAVSGTVSQVHTEQVVVKLDGNGLTALLSLSNLSNQRHTGIEELRR 750

Query: 536  IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI---------LSSYAEATDR 586
             +K G+K     +LV       S  I V  KKT+   K            +S++ +A D 
Sbjct: 751  SLKEGEKID---DLVVVSKNPVSGLIIVNIKKTITAKKEKAKKEDKAPSGISAHVKAIDA 807

Query: 587  L----ITHGWITKIEKHGCFVRFYNGVQGFA----PRSELGLDPGCEPSSMYHVGQVVKC 638
            +    I  G + +    G  V+  N ++G         +L L  G  P +   VG+ VKC
Sbjct: 808  IEVGQIITGTVQEQTSQGYMVQLPNNLRGRVHPCDSSDDLALAAGHGPLT---VGEEVKC 864

Query: 639  RIMSSIPASRRINLSFMMKPTRVSED---------DLVKLGSLVSGVVDVVTPNAVVVYV 689
             ++    + R I+LS  +   +  E+         D +K G  V G+V  +  + V V +
Sbjct: 865  YVLDVNRSKRAIDLSTRLSRVQGKENVVDREINTVDDLKEGESVRGLVKNIAGHGVFVSL 924

Query: 690  IAKGYSKGTIPT---EHLADHLEHATVMKSV------IKPGYEFDQLLVLDNESSNLLLS 740
                 ++  I     E++ D      + + V      I PG    ++ +  N S +   +
Sbjct: 925  GRNVTARIMIKELFDEYVKDWKSRFEINQLVSGKILSINPGSNSIEMTLRKNPSKSAKKT 984

Query: 741  AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQR 799
            A  SL           S       V   V  +   G F++  G  ++G   +S+  D ++
Sbjct: 985  ALLSL-----------SDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEITDNRK 1033

Query: 800  ADLS---KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 847
            AD++   K +  G  V++ I+ +++E G+I+  +K        AS+  E F
Sbjct: 1034 ADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIK--------ASYFGEEF 1076



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 131/274 (47%), Gaps = 18/274 (6%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGIDVKPGLLLQG-- 282
            +++ ++ G ++T  V+     GY++   LP+   G +   + +++  +    G L  G  
Sbjct: 804  AIDAIEVGQIITGTVQEQTSQGYMVQ--LPNNLRGRVHPCDSSDDLALAAGHGPLTVGEE 861

Query: 283  ---VVRSIDRTRKVVYLSSDPDTVS---KCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
                V  ++R+++ + LS+    V      V +++   ++D L  G  V   V++I  +G
Sbjct: 862  VKCYVLDVNRSKRAIDLSTRLSRVQGKENVVDREIN--TVDDLKEGESVRGLVKNIAGHG 919

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            V +S     T  + I  L + +   +WK+ +  ++ V+ +IL ++P S ++ +TL     
Sbjct: 920  VFVSLGRNVTARIMIKELFDEY-VKDWKSRFEINQLVSGKILSINPGSNSIEMTLRKNPS 978

Query: 397  HNRAPPSHVKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRK 452
             +    + + + D  +  KVV V R     G+ L I  + VS   + + I+D  + +V +
Sbjct: 979  KSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEITDNRKADVAQ 1038

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
              K ++EG  V+ +I+     +G  +  +KAS F
Sbjct: 1039 ALKGFREGDQVKAKIVSIDTEKGKISFGIKASYF 1072


>gi|448118427|ref|XP_004203493.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
 gi|448120825|ref|XP_004204076.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
 gi|359384361|emb|CCE79065.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
 gi|359384944|emb|CCE78479.1| Piso0_001102 [Millerozyma farinosa CBS 7064]
          Length = 1712

 Score =  351 bits (900), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 259/882 (29%), Positives = 466/882 (52%), Gaps = 71/882 (8%)

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVT 1118
            Y VG + +A I  I+  +L ++      GR+ +T+  +D S + +     S F     +T
Sbjct: 868  YSVGVVTKAIIKSIRGTQLNVQLSDNLQGRVDVTQCFNDWSEIKDKKQPLSKFAKNTEIT 927

Query: 1119 ARII----AKSNK--PDMKKSFLWELSIKPSMLT-----VSEIGSKLLFEECDVSIGQRV 1167
             ++I    AK++K  P   +    +L ++ SML+      +E    +L    D+  G  V
Sbjct: 928  VKVIGYHDAKNHKFLPITHRKSAKQLILELSMLSREIEKPNEPYRDVLLR--DIPEGSEV 985

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
              +V  +   +  ++++ +L+  + ++D + + S  ++ + +  IG A+      I+ E 
Sbjct: 986  VCFVNNIVKGFVWVSLTPNLRGHISLMDLSDDVSVYEDLENKVPIGMAIKATAKEIDSEH 1045

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYG 1287
              L L  R         T++   D     +  G  V  RI K+      ++VQ+G  L  
Sbjct: 1046 NSLVLTARK-------NTLNSIKD-----VKVGQKVPARIIKVKETY--VLVQLGDKLIA 1091

Query: 1288 RVHFTELKNICVSDPLSG-YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1346
                T+  N   SD LS  +   +F    +L +         V +SLR+         +S
Sbjct: 1092 SSFITDALN-NYSDKLSDVFHVNEFACATILAVDE---ANDKVAVSLRNQY-------AS 1140

Query: 1347 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
            D         K +   +DL    +V+G+VKN+ + G ++ L R + A V +S+LSD Y++
Sbjct: 1141 D---------KLITSHKDLKQEDVVRGFVKNIANNGVYVSLGRTVHALVRVSDLSDSYLK 1191

Query: 1407 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
              +K F   + V G+V ++    K + +TLK S+      + +   ++L VGDI  G IK
Sbjct: 1192 DWKKFFKPNQPVIGKVSAINEDGK-ILLTLKESEVY-GKLNVLKKFNDLKVGDIFEGSIK 1249

Query: 1467 RVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1525
            +V ++G+F+ ++ T  + GLCH SE+++  + ++ +++  G++VKVK+L +D+ K+++SL
Sbjct: 1250 QVTNFGVFVKLDGTVGVTGLCHHSEIADKTITDVSSLFGEGDRVKVKVLAIDESKKQLSL 1309

Query: 1526 GMKSSYF-------KNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1578
            GMK+SYF       K+DA++++MS+E    E        +++   +       D + E  
Sbjct: 1310 GMKASYFTDGSVSEKDDAEDVEMSNEGSEMEEDSSSDDEDQNDSDDEVMDDAFDGNEEDS 1369

Query: 1579 DGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEK 1638
            D  S   +  ++   V  L  N  D    + + +   +  +DE     EK ++   K + 
Sbjct: 1370 DSASEEESTQKNDDKVTGLSTNGFDWTASILDQVQDEESSSDEEDFTREKPSKKKSKAQV 1429

Query: 1639 EEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIA 1698
            +++  +I +         AP++  +FERL+ ++ +SS +W+ YM+F L + +++KAR I 
Sbjct: 1430 KDKTADINSR--------APQSVSDFERLLIANSDSSILWMNYMSFQLQLGEIDKAREIG 1481

Query: 1699 ERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1758
            ERAL++IN REE EK+NIW+A  NLEN +G+  +E++ + F+R+ QY D   +H  ++G+
Sbjct: 1482 ERALKSINFREEQEKMNIWIALLNLENTFGS--DESLTETFKRSCQYMDSLIMHQKMVGI 1539

Query: 1759 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKH 1817
            +  +E+   A  L   MIKKF  +  VW++    LL ++  E V  ++ R+L +LP+ +H
Sbjct: 1540 FVLSEKYDKASSLYNTMIKKFGKNVNVWVQYASYLLDREMNEEVHEILARSLQALPKKEH 1599

Query: 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877
            I+ + + A LEF  G  ++GRS+FEG++++ PKR DLW++Y+DQEI+ GD   +  LFER
Sbjct: 1600 IEVVRKFAQLEFTKGDPEQGRSLFEGLIADAPKRIDLWNVYIDQEIKKGDKKKVEDLFER 1659

Query: 1878 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
             ++  L  K+ +F F K+  +E SVG++  +  VK KAMEYV
Sbjct: 1660 VVTKKLSKKQARFFFNKWHSFEDSVGDQAAVARVKAKAMEYV 1701



 Score =  176 bits (445), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 180/696 (25%), Positives = 324/696 (46%), Gaps = 50/696 (7%)

Query: 175 IEANEDNLLPTI---FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ 231
           I  +E   LP++   F +G  +   V + D+++K    ++I LS+   +L + L  E + 
Sbjct: 168 ISTSEKKQLPSLQDLFTLGSWLIAKVYKPDNERK----KRIQLSVEPHVLNRSLEKEDLI 223

Query: 232 EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR 291
            G ++   + S+EDHG IL+ GLP+  GF+   ++A +SG D       Q ++ SI    
Sbjct: 224 SGNIMQCSIISVEDHGVILNTGLPNLGGFISNKDIA-SSGRDFDSLHAGQVILCSIINKP 282

Query: 292 KVVYLSSDP-DTVS---KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
               +   P D+V+     VT  +   SID + PG +V   V  I +NG++L        
Sbjct: 283 SGRTIGLKPLDSVAGSKNYVTSSIS--SIDAIQPGSLVDALVSEITKNGLVLKVFGMVDA 340

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN--PYLLH-------N 398
           T+++ +L   +     K+ Y     + AR+  V P +    L L+  P +         +
Sbjct: 341 TINLANLH-VYDYQELKHKYTVSNTIKARVTAVLPRAGTKRLMLSHLPQITSLSTARNDD 399

Query: 399 RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 458
             P      G I++ + V+  D    + ++I ++ +    +V+  D      + L   Y 
Sbjct: 400 FNPLEAFPTGYIFEDATVISHDTNY-IYVNIGTSYLQAQVHVSRIDPD----KTLSIDYY 454

Query: 459 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV-KGKVIAV--DSFGAI 515
            GS  + R++G+   E L     +         + SD+  G  + K +V+ +  +S G  
Sbjct: 455 SGSKHKARVVGYNKYENLLVLSFEPKVINAPYLSVSDIPDGTFIEKCEVLKILPNSGGLE 514

Query: 516 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKL 574
           V+      A+ P  HMS+  +V P +KF++G ++  RVL  + K + +T KK+LV     
Sbjct: 515 VKVFDEFNAIVPPEHMSDIRLVYPERKFRIGGKVKSRVLSKRGKNLFITIKKSLVNIEDQ 574

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
            +LS++ +A     T   I K   +G  V F+  ++ F P+SE+      + S    +GQ
Sbjct: 575 EVLSNFDDAKIGFKTPATIEKFVYNGAIVNFFGNLKAFLPKSEISETFVEKASDYLRLGQ 634

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV-------V 687
            V  RI+S     +R+ ++ + +   +SE     L  +  G    +TP  VV       +
Sbjct: 635 TVNVRILSVNKEQKRLVVT-LKQSVDLSESQKSSLDDIHPG--KTITPATVVEKQKESVI 691

Query: 688 YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYS 744
             ++    +G I + HL+D + E    + + +K   E  Q+LVL  D ++ +++ +AK S
Sbjct: 692 VELSGSKLRGVIYSGHLSDDNYEQNRAIFNKLKVNDEL-QVLVLEKDLKARSVICTAKKS 750

Query: 745 LINSAQQ--LPSDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
           LI +A    +P+    I   + ++ G+V ++   G F+ F G+LTG      A D    +
Sbjct: 751 LIEAASNGMIPAYFKDIKVDDRMLRGFVKSVTNMGLFISFAGKLTGLVLAKYATDRPNEN 810

Query: 802 LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           L+K +Y  +SV   ++ V+ E  R  LSLK+   SS
Sbjct: 811 LAKKFYKYKSVSCRVIRVDEENKRFLLSLKKDNNSS 846



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 177/403 (43%), Gaps = 57/403 (14%)

Query: 1111 FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            F+IG  V +R+++K  K          ++IK S++ + +   ++L    D  IG +    
Sbjct: 542  FRIGGKVKSRVLSKRGKNLF-------ITIKKSLVNIED--QEVLSNFDDAKIGFKTPAT 592

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
            + K     A++    +LKA  F+  S    + +++      +G+ V   +LS+NKE+K L
Sbjct: 593  IEKFVYNGAIVNFFGNLKA--FLPKSEISETFVEKASDYLRLGQTVNVRILSVNKEQKRL 650

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQI-GPHLYG 1287
             + L+        ++VD+S     +   IH G  +    + +      ++V++ G  L G
Sbjct: 651  VVTLK--------QSVDLSESQKSSLDDIHPGKTITPA-TVVEKQKESVIVELSGSKLRG 701

Query: 1288 RVHFTEL------KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1341
             ++   L      +N  + + L   DE Q +  +    +R+V  T    L + ++ +GM 
Sbjct: 702  VIYSGHLSDDNYEQNRAIFNKLKVNDELQVLVLEKDLKARSVICTAKKSL-IEAASNGMI 760

Query: 1342 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1401
                 D+  D                + +++G+VK+VT+ G FI  + KL   VL    +
Sbjct: 761  PAYFKDIKVD----------------DRMLRGFVKSVTNMGLFISFAGKLTGLVLAKYAT 804

Query: 1402 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINN-------- 1451
            D   E+  K+F   K V+ RV+ V+  +KR  ++LK   + S T +   + N        
Sbjct: 805  DRPNENLAKKFYKYKSVSCRVIRVDEENKRFLLSLKKDNNSSDTFNDEPLQNPVDKSKAV 864

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
            + +  VG +    IK +    L + + + NL G   V++   D
Sbjct: 865  IGDYSVGVVTKAIIKSIRGTQLNVQLSD-NLQGRVDVTQCFND 906



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 1353 DTP-GKHLEKIEDLS--PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
            D P G  +EK E L   PN           S G  + +  + +A V   ++SD  +  PE
Sbjct: 491  DIPDGTFIEKCEVLKILPN-----------SGGLEVKVFDEFNAIVPPEHMSDIRLVYPE 539

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1469
            ++F IG  V  RVLS     K + +T+K S      Q  ++N  +  +G      I++  
Sbjct: 540  RKFRIGGKVKSRVLSKR--GKNLFITIKKSLVNIEDQEVLSNFDDAKIGFKTPATIEKFV 597

Query: 1470 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
              G  +     NL      SE+SE  V+      R G+ V V+IL V+KE++R+ + +K 
Sbjct: 598  YNGAIVNFFG-NLKAFLPKSEISETFVEKASDYLRLGQTVNVRILSVNKEQKRLVVTLKQ 656

Query: 1530 S 1530
            S
Sbjct: 657  S 657



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 5/191 (2%)

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
            +A  +    A + L+ +H D+K   VV+G V  + + G  V     V AL  +  +S+  
Sbjct: 1130 VAVSLRNQYASDKLITSHKDLKQEDVVRGFVKNIANNGVYVSLGRTVHALVRVSDLSDSY 1189

Query: 536  IVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
            +    K FK    ++ +V  +    +I +T K++ V  KL +L  + +     I  G I 
Sbjct: 1190 LKDWKKFFKPNQPVIGKVSAINEDGKILLTLKESEVYGKLNVLKKFNDLKVGDIFEGSIK 1249

Query: 595  KIEKHGCFVRFYN--GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
            ++   G FV+     GV G    SE+      + SS++  G  VK +++ +I  S++  L
Sbjct: 1250 QVTNFGVFVKLDGTVGVTGLCHHSEIADKTITDVSSLFGEGDRVKVKVL-AIDESKK-QL 1307

Query: 653  SFMMKPTRVSE 663
            S  MK +  ++
Sbjct: 1308 SLGMKASYFTD 1318


>gi|116487529|gb|AAI26004.1| LOC779090 protein [Xenopus laevis]
          Length = 1427

 Score =  350 bits (898), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 354/1379 (25%), Positives = 633/1379 (45%), Gaps = 140/1379 (10%)

Query: 131  ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANE--DNLLPT 185
            +S GM   G V    + +L + LP  L G  +A    DA   ++  ++E ++  + L+P 
Sbjct: 76   LSVGMLFLGCVKRTKDFELTVSLPYCLTGYIQATNICDAYTNLISEQVEKDDPLEALVPL 135

Query: 186  --IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 243
              ++  G LV C +  L+      G   + LS+    + K L+  +++ GMVL+  V S+
Sbjct: 136  SELYSPGMLVRCAISSLETTAS--GFPSVKLSVNPKHVNKALNTGSIKTGMVLSGCVSSV 193

Query: 244  EDHGYILHFGLPSFTGFLPRNNLA-----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 298
            EDHGY++  G+     FLPR            G  ++ G  L  VV  +    K+V LS 
Sbjct: 194  EDHGYLVDIGVAGTKAFLPRQKAQLFLSQAGQGSLLRVGEYLNCVVEEVKNEGKIVRLSI 253

Query: 299  DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              + V+  +    +  +++ L+PG++   +++ ++ N + LSFL+ +TG VD  H +   
Sbjct: 254  IQNDVASALATVEQNWNLNNLLPGLVFKAQIEKVMHNNITLSFLSSYTGFVDFLHFE--- 310

Query: 359  PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH--NRAPP-SHVKVGDIYDQSK 415
                    Y + ++V A IL++DP+++ + LTL    L   N  P  +   VG + D   
Sbjct: 311  --PKKIGSYKEGQEVKACILWLDPSTKTIRLTLRQCFLQPGNTLPQLTSDWVGSVLDNCV 368

Query: 416  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
            V  + +  G + ++    +       +S   +       +K+K+G+  + RI  F  ++ 
Sbjct: 369  VQTLFKNAGAVFELEGGNLGFAFKHHLSASKQPHF----EKFKKGTTHKGRITDFSPMDE 424

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
            +    LK      L   H D++PG V++G V  +++ G +VQ    +  L P  H ++  
Sbjct: 425  MHILSLKEKVITNLFLRHEDIQPGQVLEGTVKCMEAVGMVVQITDHLTGLVPKLHFADVL 484

Query: 536  IVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
            +  P KK+ +G ++  +VL V +  +++ +T K+TL+KS L +L+SY +A   LITHG+I
Sbjct: 485  LKHPEKKYIIGNKIKCKVLTVVTCERKLILTRKRTLMKSTLPVLASYEDAQPGLITHGFI 544

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
              I+ +GC V+FYN VQG APR ELG L         ++ GQV+K +++   P ++++ L
Sbjct: 545  VAIKDYGCLVKFYNEVQGLAPRRELGSLQEISSLEDAFYRGQVIKVQVLECNPQTQQLLL 604

Query: 653  SFMMKPTRVSEDD--------LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            SF +     +E +         VKL  G LV   V   T   V V V+ +  S   IP  
Sbjct: 605  SFRITEEGHTEQEQRFLKKIKAVKLDVGKLVDIRVLSKTDKGVNVLVLPE-ESPAFIPKM 663

Query: 703  HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH 760
            HL+DH+ +  ++   ++ G +    + L +   + +L+ K  LI+S ++       S + 
Sbjct: 664  HLSDHVSNCELLWHTLQEGDDIPGAMCLSSLKGHSILTKKSLLISSVEKGSCVKVISEVQ 723

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
                + G+V +I+  G FV F   L G  P S+  D    ++   +  G +V + ++ ++
Sbjct: 724  TGMHLTGFVKSIMPYGVFVEFPYGLFGLVPMSEISDKFVTNIRDHFVEGNTVVATVIKMD 783

Query: 821  SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ------SSKHNGSELKWVEGFII 874
             E  R  L+LK S C+  D S ++  FLL +  + LQ      + K +  +   +   I 
Sbjct: 784  EEKKRFLLTLKMSECAPDDYS-IEGLFLLSQCFSELQLMKGLLARKGDPEDELSIYTLIA 842

Query: 875  GSVIEGKVHESNDFGVVVSFEEHSDVYGF----ITHHQLAGATVESGSVIQAAILDVAKA 930
            G  +   V  + + G  V F   S + G      T + +    + +G  ++A +L V   
Sbjct: 843  GQKLTLVVENAEENG-PVQFSAGS-ISGAQTVSATQYHIGDKALVAGQKVKAVVLHVDML 900

Query: 931  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 990
               V +SL    +               K+K+   K    H   +A V+ V E + V+SL
Sbjct: 901  TLHVHVSLNQTLL---------------KKKQNVPKMNSSH---SADVQHVAEEFAVVSL 942

Query: 991  PEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL-KAISETE 1048
             +  H I     S  N T +F  ++   G++ I+ ++   + +  G LL +  KA S+T 
Sbjct: 943  ADSAHLIAVPVSSHLNDTFRFESEKLKVGET-ISVILKTTTVNEHGLLLAVQNKAASKTS 1001

Query: 1049 ------TSSSKRAKKKSSY--DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
                  T S+ R +   S+   +G LV   +  IKP ++ +       G IH++++ D+ 
Sbjct: 1002 KNLGRTTQSAMRVRGAISHGLKIGDLVTGTVKSIKPTQVTVSINDNVFGFIHVSQIMDET 1061

Query: 1101 SNVVENLFSNFKIG--QTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVS 1148
                +  F   K+   Q VT R+I     K+++      PD   S + ELS+ P ++   
Sbjct: 1062 P---QGCFPTSKLNPKQEVTCRVIGGREVKTHRYLPITHPDFIHS-VPELSLLPELINTD 1117

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQEF 1206
             +      +    + G +VT YV K + E   L   I+  ++ ++ +L  +  P  L+  
Sbjct: 1118 NVPKPRALK--TFNPGDKVTCYVNKFNTETKYLEVEITPEIRGRIELLLLSQTPKNLKRP 1175

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            ++ F  G+A++  V+  +   K L L L     GI               + EG +    
Sbjct: 1176 EKLFKNGQALSATVVGPDAVHKHLCLSL----TGIHS-------------LEEGAVTVAC 1218

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGT 1326
            ++K++ G  GL + +     G  +   L +      L  +  G+FV+C +L  S+ V+  
Sbjct: 1219 VTKVVKG-SGLTLSLPFGKTGNANMFHLCDKYAEASLEKFTPGKFVRCAILSNSKIVK-- 1275

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
                +SLR      S  N    S+ VD   + +  I+ L    +V G+V  +T +KG F 
Sbjct: 1276 ----VSLRQ-----SRVNQQAQSSAVD---EDIASIDSLEEGQLVSGFVSAITENKGVFF 1323

Query: 1386 MLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
             LS  +   +   N++  +V  P       P G L+  +VLS++P  K VE++L  +D+
Sbjct: 1324 RLSSFIVGHIQFQNVTSYFVYEPSAYSNYIPEGTLLTAKVLSIDPDKKHVELSLLPTDT 1382



 Score = 45.1 bits (105), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
            S +  +S +  G  + G +K +  YG+F+      L GL  +SE+S+  V NI   +  G
Sbjct: 714  SCVKVISEVQTGMHLTGFVKSIMPYGVFVEFP-YGLFGLVPMSEISDKFVTNIRDHFVEG 772

Query: 1507 EKVKVKILKVDKEKRRISLGMKSSYFKND 1535
              V   ++K+D+EK+R  L +K S    D
Sbjct: 773  NTVVATVIKMDEEKKRFLLTLKMSECAPD 801


>gi|303291157|ref|XP_003064865.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453891|gb|EEH51199.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 2229

 Score =  348 bits (893), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 251/840 (29%), Positives = 402/840 (47%), Gaps = 140/840 (16%)

Query: 129 KNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA----------- 177
           K +  G KL GVV +VN+  + + LP GLRG    A+A D  +  + +            
Sbjct: 93  KTLRVGTKLMGVVVDVNDAGMSLSLPNGLRGSVTRAEASDAFVAAKKKKKTTKMTKMKKK 152

Query: 178 ---------------------------NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKR 210
                                           L  +F VGQ++  +V++    K + G +
Sbjct: 153 TADSSESESESESESDESDSDDDDEALTNAEPLAALFKVGQILRAVVVR--SGKGKSGGK 210

Query: 211 KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAEN 269
           +I LS RLS +  G++ + + +G  + A V  +E HG++L+FG+  +  GFLPR ++   
Sbjct: 211 RIDLSTRLSRVCDGVAKDALVDGAAVPACVTGVEAHGFVLNFGIDDAPIGFLPRKSVRAE 270

Query: 270 SGIDVKPGLLLQGVV----------------------RSIDRTRKVVYLSSDPDTVSKCV 307
               +  G +L  V+                      R++    +VV  ++D   VS  V
Sbjct: 271 MASSLARGAILDVVINASAGPGGDGGNGEDGGGKEKKRALVTNSRVVQCTADAKRVSSAV 330

Query: 308 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN---------TF 358
           T++    S+  L+PGM+V+ RV+++L +G+ ++F+TYFT T+D FHL +           
Sbjct: 331 TRESDYTSMQSLLPGMLVNARVRAVLSDGISVNFMTYFTATIDAFHLGDGKGTDGKHLNG 390

Query: 359 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRA-------------PPSHV 405
           PT +    +    +  AR+LFVD  ++ +GLTL P+L+  +A             P SH+
Sbjct: 391 PTPDVSKTHKVGDRCRARVLFVDADAKRIGLTLRPHLVSPQAVSVQPSSTETGGDPLSHL 450

Query: 406 ---KVGDIYDQSKVVRVDRGLGLLLDIP-STPVSTP--------------------AYVT 441
              K G  YD + V RVD  +G+LL++P S   + P                     YV 
Sbjct: 451 NLPKPGTSYDAAIVRRVDANVGVLLELPPSGAAAAPTDDESRMGKQSYSPPKGACLGYVH 510

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMV 501
           ISD  ++ + +LEKK+K G+ VR R++G R ++G+AT   K +  E    +  ++ PGM 
Sbjct: 511 ISDATDDHIERLEKKFKVGATVRARVIGRRVVDGVATASCKKTVVEQPFLSLDELTPGMK 570

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSK 559
           VKG+V+AV+ +GA+++   GVKAL P  H+S+        K   GA L FRVL   V   
Sbjct: 571 VKGEVVAVEPYGAVIKLAPGVKALLPPHHVSDIPGRTTNAKVCPGARLNFRVLSVDVARS 630

Query: 560 RITVTHKKTLVKSKLAILSSYAEAT--DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           R TVT KKT++ S L ++++  +AT      THG +T +E +G FV  Y  ++G A   +
Sbjct: 631 RATVTRKKTILNSDLDVIATMEDATRAGGATTHGVVTGVEPYGVFVSLYGALRGLAGAQD 690

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM------------------MKPT 659
           LGL PG  P+  + VGQ V+ R++ +     ++ LS                        
Sbjct: 691 LGLAPGQTPTEAFQVGQCVRARVIRADNGPGKLKLSLAPGGSGDGVVLHDDEGGGGGGGG 750

Query: 660 RVSEDDLVKLGSLV-SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVI 718
           R+ +      G+++ S VV  V  +   V V   G   G I   H++DH      + +  
Sbjct: 751 RLDDVGAPPPGTIIESAVVKRVDADTGNVLVTLPGGVPGVITAAHVSDHPVTGAALVATY 810

Query: 719 KPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIE-T 775
            P      L+ L+ +    +LS K SL+ +A+   LP+  + +   +   GYV +  +  
Sbjct: 811 APDDAIGPLVALEAKPRRSILSRKTSLVTAARSDALPASVADVVVGASYPGYVASATQNA 870

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQR---ADLSKTYYVGQSVRSNI--LDVNSETGRITLSL 830
           G FVRFLGRLTG AP S+ V G R   AD  + +  GQSVR+ +  +D   +  R++LSL
Sbjct: 871 GVFVRFLGRLTGLAPPSQLVPGARGGDADPEECFAPGQSVRARVTAVDATVDPPRLSLSL 930



 Score =  276 bits (707), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 137/319 (42%), Positives = 198/319 (62%), Gaps = 25/319 (7%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--APRTPDEFERLVRSSPNSSFVWIKYMA 1683
            ++  ++  K +EK  RE E+   E+ L +    AP T  E+E+L+  +P SS+ W+K++A
Sbjct: 1904 EKPKSKREKAREKANREMELHRKEQALRDAADRAPETAAEYEKLIMQTPRSSYAWLKFVA 1963

Query: 1684 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-PEEAVVKVFQRA 1742
            F +S+   + AR+  ERAL+ I   EE E++NIW+AY NLEN++G P P EA  + F+RA
Sbjct: 1964 FHVSVGAYDDARACLERALKAIPASEEEERMNIWIAYLNLENKHGKPSPVEATERTFKRA 2023

Query: 1743 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-------SCKVWLRRVQRL-- 1793
             Q  +PKK+HL L G++ER+  +  A  +L + +KKF         S KVWL  V+    
Sbjct: 2024 CQVANPKKLHLTLAGVHERSGNDANARRVLAEAVKKFSQARSSITLSAKVWLAHVRAAIL 2083

Query: 1794 -LKQQQEG------------VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
             L     G            V+  + RA  +LP+ KH+K + QTA+ EF+ G  +RGR+M
Sbjct: 2084 SLDAANPGTGTGGGAVDADVVKRALDRATQALPKRKHVKLMVQTALCEFREGRPERGRTM 2143

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900
            FE IL  YP+RTD+WS Y+DQEI+ GD D  RGL ERA  L L PK MKFLFKK+L++E+
Sbjct: 2144 FESILRNYPRRTDIWSTYVDQEIKCGDDDRTRGLLERATHLELTPKSMKFLFKKFLDFER 2203

Query: 1901 SVGEEERIEYVKQKAMEYV 1919
              G +E++E VK+ AM+YV
Sbjct: 2204 KRGNKEKVEKVKRMAMDYV 2222



 Score = 54.3 bits (129), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)

Query: 875  GSVIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVES----------GSVIQAA 923
            GS I   VH + ++GV++   +  SD+   +  HQ   A  +           G+ +   
Sbjct: 1018 GSSISCVVHATREYGVLMDVPDVDSDLVALMAFHQTPAAADDDDDDAAPPPDEGTKVNGV 1077

Query: 924  ILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH-----------Q 972
            +LDV++ + +VD+  +   +   +   S ++ + KK +     D               +
Sbjct: 1078 VLDVSRRDGVVDVGARPGLLAMMKPGPSPKKTRSKKTRGGGGGDASTTYLPPPRPKKGTE 1137

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 1006
            TV A+VE+VK  Y+VLSLP++  +IGY +    N
Sbjct: 1138 TV-AVVELVKPEYVVLSLPKHGGAIGYCAARSVN 1170



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 103/470 (21%), Positives = 190/470 (40%), Gaps = 77/470 (16%)

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
            G +HI++  DD    +E L   FK+G TV AR+I +     +  +   +  ++   L++ 
Sbjct: 507  GYVHISDATDDH---IERLEKKFKVGATVRARVIGRRVVDGVATASCKKTVVEQPFLSLD 563

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1208
            E+           + G +V G V  V+   A++ ++  +KA L        P  + +   
Sbjct: 564  EL-----------TPGMKVKGEVVAVEPYGAVIKLAPGVKALL-------PPHHVSDIPG 605

Query: 1209 RFHIGKAVTG-----HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
            R    K   G      VLS++        V R        KT+  S+ ++   + +    
Sbjct: 606  RTTNAKVCPGARLNFRVLSVD--------VARSRATVTRKKTILNSDLDVIATMEDATRA 657

Query: 1264 GGRISK-ILSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
            GG  +  +++GV   G+ V +   L G     +L       P   +  GQ V+ +V+   
Sbjct: 658  GGATTHGVVTGVEPYGVFVSLYGALRGLAGAQDLGLAPGQTPTEAFQVGQCVRARVI--- 714

Query: 1321 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS---PNMIVQGYV-- 1375
            R   G   ++LSL        S +   L  D    G    +++D+    P  I++  V  
Sbjct: 715  RADNGPGKLKLSLAPG----GSGDGVVLHDDEGGGGGGGGRLDDVGAPPPGTIIESAVVK 770

Query: 1376 -KNVTSKGCFIMLSRKLDAKVLLSNLSD------GYVESPEKEFPIGKLVAGRVLSVEPL 1428
              +  +    + L   +   +  +++SD        V +   +  IG LVA   L  +P 
Sbjct: 771  RVDADTGNVLVTLPGGVPGVITAAHVSDHPVTGAALVATYAPDDAIGPLVA---LEAKP- 826

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQ------IKRVESYGLFITIENTNL 1482
             +R  ++ KTS   TA++S+    S   V D+V+G           ++ G+F+      L
Sbjct: 827  -RRSILSRKTS-LVTAARSDALPAS---VADVVVGASYPGYVASATQNAGVFVRFLG-RL 880

Query: 1483 VGLCHVSEL---SEDHVDNIETIYRAGEKVKVKILKVDK--EKRRISLGM 1527
             GL   S+L   +     + E  +  G+ V+ ++  VD   +  R+SL +
Sbjct: 881  TGLAPPSQLVPGARGGDADPEECFAPGQSVRARVTAVDATVDPPRLSLSL 930


>gi|301614745|ref|XP_002936843.1| PREDICTED: protein RRP5 homolog [Xenopus (Silurana) tropicalis]
          Length = 1818

 Score =  347 bits (891), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 365/1484 (24%), Positives = 670/1484 (45%), Gaps = 199/1484 (13%)

Query: 54   FPRGGGHSLTQRERDE-----------------IHAEVDAEFEAVERGLHKKNK--KKKK 94
            FPRGG    TQ++ D+                  H E + E +  ++  H+K K   ++K
Sbjct: 5    FPRGG----TQKKTDQKTVKKRPKENDGNLFSTYHEENEQEIKKKKKVFHEKPKAASQEK 60

Query: 95   KTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLP 154
                 A ETV+             +P+Y      KN+S GM   G V +  + +L + LP
Sbjct: 61   SVTTAAKETVE-------------IPQY------KNLSVGMMFLGCVKQAKDFELAVSLP 101

Query: 155  GGLRGLARA---ADALDPILDNEIEANE--DNLLP--TIFHVGQLVSCIVLQLDDDKKEI 207
              L G  +A    +A   ++  +++ ++  + L P   ++  G LV C +  L+      
Sbjct: 102  YCLTGYIQATNICEAYTKLIGEQVKKDDPMEALTPLSELYSPGMLVRCAISSLETTTS-- 159

Query: 208  GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA 267
            G   + LS+    + K L+  +++ GM+++  V S+EDHGY++  G+     FLPR    
Sbjct: 160  GCNSVKLSINPKHVNKALTTGSLKAGMLVSGCVSSVEDHGYLVDIGVTGSKAFLPRQKAQ 219

Query: 268  -----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPG 322
                    G  ++ G  L  V++ +    ++V LS   + V+  +    +  +++ L+PG
Sbjct: 220  LFLNQAGKGPLLRIGQYLNCVIQEVKNEGRIVRLSITQNDVTGALATMEQNWTLNNLLPG 279

Query: 323  MMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDP 382
            +++  +++ + ++ + LSFL+ +TG VD  H +           Y + ++V A IL++DP
Sbjct: 280  LVLKAQIEKVTQSSITLSFLSSYTGFVDFLHFE-----PKKIGSYKEGQEVKACILWLDP 334

Query: 383  TSRAVGLTLNPYLLHNRAPPSHVK---VGDIYDQSKVVRVDRGLGLL--LDIPSTPVSTP 437
            +++++ LTL         P   +    VG + +   V  + R  G +  LD  +   +  
Sbjct: 335  STKSIRLTLRQCFQQPGNPLPQLTSDWVGSVLENCMVQTLVRNAGAIFELDGGNLGFAFK 394

Query: 438  AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
              ++ S   + E+      +K+G+  + RI  F  +E +    L+      L   H D++
Sbjct: 395  HNLSASKHPDNEI------FKKGTAHKGRIKEFSPMEEMHFLSLREKMITDLFLRHEDIQ 448

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV- 556
             G V++G + ++++ G +V+    +  L P  H ++  +  P KK+ +G ++  +VL V 
Sbjct: 449  AGQVLEGTIQSLEAVGLVVKITDHLTGLVPKLHFADVLLKHPEKKYIIGNKIKCKVLTVI 508

Query: 557  -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
               +++ +T KKTL+KSKL I++S+ +A   LITHG+I  I+ +GC V+F+N VQG APR
Sbjct: 509  TSERKLILTRKKTLMKSKLPIIASFDDAQPGLITHGFIVAIKDYGCIVKFFNEVQGLAPR 568

Query: 616  SELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-------------MMKPTRV 661
             ELG L         ++ GQV+K R++   P ++++ LSF              +K T+ 
Sbjct: 569  RELGSLQEISSLEDAFYRGQVIKVRVLDCNPQTQKLLLSFRITEEGETEQEQRYLKKTKA 628

Query: 662  SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
             + D   +G +V   V   T   V V ++ +  S   IP  HL+DH+ +  ++   ++ G
Sbjct: 629  VKLD---VGKVVDTRVVSKTDKGVNVLILPE-ESPAFIPKMHLSDHISNCELLWHALEEG 684

Query: 722  YEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFV 779
                 ++ L     + +L+ K  LI+S ++       S +     + G+V +I+  G FV
Sbjct: 685  DNIPGVMCLSTFKGHHILTKKAVLISSFEKGSCVKVISEVQTGMHLTGFVKSIMPYGAFV 744

Query: 780  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             F   L G  P+S+  D    ++S   + GQ+V + ++  + E  R  L+LK S C+ +D
Sbjct: 745  EFPYGLFGLVPKSEISDKFVTNISDHLFEGQTVLAKVIKTDEEKQRFLLTLKMSECAPSD 804

Query: 840  ASFMQEHFLLEEKIAMLQ------SSKHNGSE----LKWVEGFIIGSVIE-----GKVHE 884
             S  +   LL +  + LQ      S K +  +         G  +  V+E     G VH 
Sbjct: 805  CS-AEGLLLLSQCFSELQLLKGLLSRKGDPEDELSIYTLTSGQKLTLVVENAEENGPVHF 863

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
            S   G +   +  S      TH+ +   T  +G  ++A +L V   +  V +SL    + 
Sbjct: 864  ST--GSITGAQTVS-----ATHNNIGDETPIAGQKVKAVVLHVDLLKLHVYVSLNEALL- 915

Query: 945  RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD 1004
                          K+K+   K    H   +A V  V E + V+SL    H       S 
Sbjct: 916  --------------KKKKNVPKMNSSH---SADVLHVAEEFAVVSLTGPAHLAAVPMSSH 958

Query: 1005 YN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS---- 1059
             N T  F  ++   G+++  TV+   +S     LLL ++  S  +TS ++   K+S    
Sbjct: 959  LNDTFHFESEKLKVGETI--TVILKATSVNEQGLLLAVQNKSALKTSKNQGQTKQSDVKT 1016

Query: 1060 ------SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 1113
                     VG LV   +  IKP ++ +       G IH++++ +D + +     S    
Sbjct: 1017 SGFMAHGLKVGDLVSGTVKSIKPTQVIVSINDNVCGFIHVSQITED-TPLGSFPTSKLSP 1075

Query: 1114 GQTVTARIIA----KSNK------PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1163
             Q VT R+I     KS++      PD   S L ELSI P ++       K    +   + 
Sbjct: 1076 KQEVTGRVIGGREVKSHRYLPITHPDFIHS-LPELSILPGLINKDNKVPKPRPLKT-FTP 1133

Query: 1164 GQRVTGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
            G++VT Y+  Y  + ++  + I+  ++ ++ +L  +  P  L+  ++ F  G++++  V+
Sbjct: 1134 GEKVTCYINKYNTEKKYLEVEITPQIRGRIELLLLSQTPKNLKRPEKLFKNGQSLSATVV 1193

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
              +   K L L L     GI               + EG +    ++K++ G  GL + +
Sbjct: 1194 GPDATHKHLCLSL----TGIYS-------------LEEGSVTMASVTKVVKG-SGLTLSL 1235

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1341
                 G      L +      L  +  G+ V+C +L +S+T++ +      ++S ++  +
Sbjct: 1236 PFGKTGEASIFHLHDNYTEASLDKFTPGKIVRCAILSVSKTIKVSL-----MQSKINQQA 1290

Query: 1342 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSRKLDAKVLLSNL 1400
            S ++ D         K +   + L    +V G+V  VT +KG F  LS  +   +   N+
Sbjct: 1291 SKSTDD---------KEITSFDSLEEGQLVTGFVSAVTQNKGVFFRLSSSIVGHIQFRNI 1341

Query: 1401 SDGYV---ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            +  +V    +  K  P G L+  +VLSV+P  K VE++L  SD+
Sbjct: 1342 TSYFVYDTSAYSKYIPEGTLLTAKVLSVDPEQKHVELSLLPSDT 1385



 Score =  285 bits (729), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 141/288 (48%), Positives = 202/288 (70%), Gaps = 4/288 (1%)

Query: 1636 KEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1694
            +EK+E E+E+   E  L +    P++ D+F+RLV SSP+SS +W++YMAF L   ++EKA
Sbjct: 1526 REKKEAEKELSKKEAALQDSGRQPQSADDFDRLVISSPDSSILWLQYMAFHLHATEIEKA 1585

Query: 1695 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1754
            R +AERAL+TI+ REE EKLN+WVA  NLEN YG   EE++VK F+RA+QY +P KV+  
Sbjct: 1586 RVVAERALKTISFREEQEKLNVWVALLNLENMYGT--EESLVKAFERAVQYNEPLKVYQQ 1643

Query: 1755 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLP 1813
            L  +Y ++E+ K A++L   M+K+F+    VW++    LLKQ Q +G   ++QRAL SLP
Sbjct: 1644 LADIYVKSEKFKQAEDLYNTMLKRFRQEKSVWIKFATFLLKQGQGDGTHRLLQRALKSLP 1703

Query: 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1873
               H+  IS+ A LEF+ G ++R +++FE  LS YPKRTDLWS+Y+D  ++ G    +R 
Sbjct: 1704 EKDHVDVISKFAQLEFQLGDSERAKALFESTLSSYPKRTDLWSVYIDMMVKHGSQREVRD 1763

Query: 1874 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            +FER I LSL  K++KF FK+YLEYEK  G  E ++ VK+KA++YVES
Sbjct: 1764 IFERVIHLSLAAKRIKFFFKRYLEYEKKHGSAESVQAVKEKALQYVES 1811



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
            S +  +S +  G  + G +K +  YG F+      L GL   SE+S+  V NI      G
Sbjct: 716  SCVKVISEVQTGMHLTGFVKSIMPYGAFVEFP-YGLFGLVPKSEISDKFVTNISDHLFEG 774

Query: 1507 EKVKVKILKVDKEKRRISLGMKSS 1530
            + V  K++K D+EK+R  L +K S
Sbjct: 775  QTVLAKVIKTDEEKQRFLLTLKMS 798



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 102/240 (42%), Gaps = 31/240 (12%)

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 1068
            K P+K F NGQS+ ATV+     +T   L L L  I               S + GS+  
Sbjct: 1176 KRPEKLFKNGQSLSATVVG--PDATHKHLCLSLTGIY--------------SLEEGSVTM 1219

Query: 1069 AEITEI-KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI--IAKS 1125
            A +T++ K   L L    G  G   I  ++D   N  E     F  G+ V   I  ++K+
Sbjct: 1220 ASVTKVVKGSGLTLSLPFGKTGEASIFHLHD---NYTEASLDKFTPGKIVRCAILSVSKT 1276

Query: 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV-DNEWALLTIS 1184
             K  + +S + + + K +     EI S    EE     GQ VTG+V  V  N+     +S
Sbjct: 1277 IKVSLMQSKINQQASKST--DDKEITSFDSLEE-----GQLVTGFVSAVTQNKGVFFRLS 1329

Query: 1185 RHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
              +   + F   ++Y   +   + +    G  +T  VLS++ E+K + L L P   G  D
Sbjct: 1330 SSIVGHIQFRNITSYFVYDTSAYSKYIPEGTLLTAKVLSVDPEQKHVELSLLPSDTGKPD 1389



 Score = 41.2 bits (95), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 160/412 (38%), Gaps = 65/412 (15%)

Query: 1137 ELSIKPS----MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
            +LSI P      LT   + + +L   C  S+     GY+  +    +   + R  KAQLF
Sbjct: 165  KLSINPKHVNKALTTGSLKAGMLVSGCVSSVEDH--GYLVDIGVTGSKAFLPRQ-KAQLF 221

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
            +  +   P           IG+ +   +  +  E +++RL +   Q+ ++     +  + 
Sbjct: 222  LNQAGKGP--------LLRIGQYLNCVIQEVKNEGRIVRLSIT--QNDVTGALATMEQNW 271

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
                +  G ++  +I K+      + +       G V F   +       +  Y EGQ V
Sbjct: 272  TLNNLLPGLVLKAQIEKVTQS--SITLSFLSSYTGFVDFLHFE----PKKIGSYKEGQEV 325

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-----LSP 1367
            K  +L +  + +    + L+LR                    PG  L ++       +  
Sbjct: 326  KACILWLDPSTKS---IRLTLRQCFQ---------------QPGNPLPQLTSDWVGSVLE 367

Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE-FPIGKLVAGRVLSVE 1426
            N +VQ  V+N    G    L           NLS    + P+ E F  G    GR+    
Sbjct: 368  NCMVQTLVRNA---GAIFELDGGNLGFAFKHNLSAS--KHPDNEIFKKGTAHKGRIKEFS 422

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNL----SNLHVGDIVIGQIKRVESYGLFITIENTNL 1482
            P+ +   ++L+        +  I +L     ++  G ++ G I+ +E+ GL + I + +L
Sbjct: 423  PMEEMHFLSLR--------EKMITDLFLRHEDIQAGQVLEGTIQSLEAVGLVVKITD-HL 473

Query: 1483 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
             GL      ++  + + E  Y  G K+K K+L V   +R++ L  K +  K+
Sbjct: 474  TGLVPKLHFADVLLKHPEKKYIIGNKIKCKVLTVITSERKLILTRKKTLMKS 525


>gi|346977319|gb|EGY20771.1| rRNA biogenesis protein RRP5 [Verticillium dahliae VdLs.17]
          Length = 1790

 Score =  347 bits (889), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 324/1243 (26%), Positives = 592/1243 (47%), Gaps = 132/1243 (10%)

Query: 737  LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            + L+ K +L+NS   +      +       G + +I   G  + F   + G+ P S+  +
Sbjct: 612  MRLTLKKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSE 671

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
                D  + + VGQ V  +IL+V+ E  ++ +S K               F L+++ A+ 
Sbjct: 672  AFIQDPKEHFKVGQVVNVHILEVDPENQKLLVSCKDPSA-----------FGLDKQAAL- 719

Query: 857  QSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
                         +   +GS++ GKV + +D  V V  +  S++   +   QL   T +S
Sbjct: 720  -------------KALSVGSIVSGKVIQKSDDDVHVELD-GSNLKAILPLGQL---TDKS 762

Query: 917  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQA---QKKKRKREASK------- 966
             +  Q+A+  +   + L DL    + +D+    N  R+A     K    EA K       
Sbjct: 763  ANKSQSALKRIHMGQTLTDL----LVLDK----NERRRAITLSSKPSLVEAGKTGKLICT 814

Query: 967  --DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS---VSDYNTQKFPQKQFLNGQSV 1021
              D  V   V   +  ++   +++        + + +   + D   + F  ++    QS+
Sbjct: 815  YADAKVGAEVPGFISSIRPGAVLVRFGGNLVGVMFKTRLPIEDQEKEAFGLRK---DQSI 871

Query: 1022 IATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS---------YDV--GSLVQAE 1070
               + A+    T    L++    +E  ++ +K  K+K S          D+  G +V+A+
Sbjct: 872  TVRIRAIDLERTR---LVVDPLTAELPSNEAKPKKEKESARPQAHGPVQDITFGQIVEAK 928

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARIIAKSNKP 1128
            I  I   +L ++      GR+ I+++ D   N+   E   S FK G+T+  R I   +  
Sbjct: 929  IVGIHDTQLNVETADKVQGRVDISQIFDSWDNIKDPEEPLSQFKKGETIRVRAIGLHDSK 988

Query: 1129 DMK------KSF--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
            D +      +S+  + E + K S +   E+   L  E  D+ +G     +V         
Sbjct: 989  DHRFLAFSHRSYNSVLEFTAKASDIEADEL-KPLSLE--DLQVGSTHVAFVNNASRNGLW 1045

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
              IS  ++ ++  +D + + S++ +    F IG A+   V++++ ++ +L L  R     
Sbjct: 1046 TNISPVVRGRINAMDVSDDTSKMNDVINNFPIGTALKVRVIAVDAKRGVLDLSAR----- 1100

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
             SD +  ++ D+    I    ++ G + K+      ++V++G ++ G VH  ++ +    
Sbjct: 1101 -SDSSAAVTWDS----IKPNQVLAGCVVKV--NERQIMVKLGSNVAGHVHLVDMSDDFGD 1153

Query: 1301 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1360
                 YD+G  ++  V+E+ ++ +    V LS R S       NSS   TD       + 
Sbjct: 1154 VNTLKYDKGDAIQVSVVEVDKSNK---RVRLSTRPS----RVLNSSSPITD-----PEIT 1201

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
             ++ +     ++G+VK+V  KG F++L   + A V +SNLSD +++  ++ F + +LV G
Sbjct: 1202 SVKQVVSGSTIRGFVKHVADKGVFVLLGGNVSALVKISNLSDRFLKEWKEHFQVDQLVKG 1261

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
            RVLSV+  + +VE++LK+S     +   +    ++    IV G+I++VE +G FI ++ +
Sbjct: 1262 RVLSVDEGAGQVELSLKSS-VVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGS 1320

Query: 1481 -NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1539
             N+ GLCH SE+++  V++   +Y+AG+ VK K+L +D+ K+RIS G+K +YF +D D  
Sbjct: 1321 DNVSGLCHRSEMADSPVEDARKLYKAGDVVKAKVLTLDRNKKRISFGLKPAYFDDDVD-- 1378

Query: 1540 QMSSEEES----DEAIEEVGSYNRSSLLENSSVAVQDMDMES-EDGGSLVLAQIESRASV 1594
             M   E +    D   E+    +    L     +++ M  ++ ED               
Sbjct: 1379 -MDEGEGAALDSDNEEEDEVDSDEGEDLAEGGASIKFMGTDNLEDSEDEQDNADSDEDVD 1437

Query: 1595 PPLEVNLDDEQPDMDNGISQNQGHT-----DEAKTIDEKNNRHAKKKEKEEREQEIRAAE 1649
               +V++  EQ  + NG     G        E ++   KN+   +K+ K+ ++ EI+   
Sbjct: 1438 EDGDVDMSREQNGLSNGKYDWAGDAFDDSDKETRSAPAKNSASKQKETKKPKKDEIQIDR 1497

Query: 1650 ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1709
               L+   P+T  ++ERL+   P+SS +WI YMA  + ++++ KAR IAERA++TINIRE
Sbjct: 1498 TAALDVHGPQTASDYERLLLGQPDSSALWIAYMALQMQVSELTKAREIAERAIKTINIRE 1557

Query: 1710 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1769
            + EKLN+W+AY NLE  YG   +  V +VFQRA QY D +++H  L  +Y ++ ++K AD
Sbjct: 1558 QTEKLNVWIAYLNLEVAYGT--KTTVEEVFQRACQYNDDQEIHERLATIYIQSGKHKKAD 1615

Query: 1770 ELLYKMIKKF-KHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAI 1826
            EL    + KF   +  +W      L     Q +  +A++ RA  +L        +++   
Sbjct: 1616 ELFQATVAKFGSKNPNLWTNYAHFLHATLNQPDRARALLPRATQALGEQHTAALMAKFGS 1675

Query: 1827 LEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIRGLFERAISL- 1881
            LEF+  NG A+RGR+ FE +L+ +PKR DLW+  +D E+     D   +R +FER   + 
Sbjct: 1676 LEFRSPNGDAERGRTTFETLLATWPKRFDLWNQLVDLEMAAPGADATAVRDVFERGTKVK 1735

Query: 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
             L  ++    FK++ E+E     + + E V  KA E+V +  A
Sbjct: 1736 GLKAQRAMKWFKRWAEWEGKTDPKGK-ERVMAKAAEWVTAAKA 1777



 Score =  207 bits (528), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 329/1359 (24%), Positives = 577/1359 (42%), Gaps = 149/1359 (10%)

Query: 49   DDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLG 108
            D+ P+FPRGGG  LT  E+ +I  E  A+ +A+  G     +K K K E++    +    
Sbjct: 64   DEEPMFPRGGGSVLTPLEQKQIQLE--AKADALREGEFDTEEKTKHKKEKRRKSKLGAFE 121

Query: 109  SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                   S +       +  K ++ G  + G V+ ++  +L I LP  L G    A A+ 
Sbjct: 122  DTKKKSSSDEDGTKIEALNYKRLAKGSVVLGQVSAISHHNLTIALPNNLSGNVSIA-AIS 180

Query: 169  PILDNEIEANEDNL-----------------LPTIFHVGQLVSCIVLQLDDDKKEIGKRK 211
             ++  +I+   +                   L ++F VGQ V   V+   + +    K  
Sbjct: 181  DVVTAKIQQAAEASDDDDDSADEGDDDDDIELNSLFEVGQYVRAYVISTKEGEGSGKKNH 240

Query: 212  IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNL-AE 268
            I LSLR      G+S   V     + A V S++DHGY +  G+ +    GFLP+ ++ +E
Sbjct: 241  IELSLRPEDANSGMSKNDVVANATVMAAVTSVQDHGYEMELGVDNKKLKGFLPKKDVGSE 300

Query: 269  NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328
               + ++PG +   +V+S+  + K+  L  D + + K      +  +++   PG +V   
Sbjct: 301  VDELRLQPGAVSLCLVKSV--SGKIAQLCLDSEKMGKVDNIATEATTVNTFQPGTVVDVL 358

Query: 329  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--A 386
            V S    G++   L +   T D+ H        +    Y    +V AR++   P ++   
Sbjct: 359  VTSTTGRGLLGKILGHLPVTADLIHSGAGPDAVDLDAKYKIGSRVKARVICTFPNAKNPK 418

Query: 387  VGLTLNPYLLHNRA----------PPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
            +G++L P+++  +A          PP +V  +    D+  V +V+  +GL +D+    +S
Sbjct: 419  LGISLLPHVVKLQAKKAGKGGQAKPPLNVLPIAARVDKCTVRKVEPEIGLYVDVGVAGLS 478

Query: 436  TPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 492
               +V IS V + +V  L +    +KEGS  R R++G+   +G+     + +  E     
Sbjct: 479  --GFVHISKVKDGKVEALYESSGPFKEGSVHRGRVIGYSTFDGMYLMTFEPTIIEQQFIR 536

Query: 493  HSDVKPG-----MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
              DV  G     M+ K  V      G +V+   G+       H ++  +  P KKF+ G 
Sbjct: 537  LEDVPAGEIVSCMIEKVVVGGQGVSGLVVKVAEGITGYVHETHFADVRLQHPEKKFREGM 596

Query: 548  ELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
             +  RVL V+ ++  + +T KKTLV S   I+ S+ E        G I+ I  HG  + F
Sbjct: 597  TVKARVLSVRPRKRQMRLTLKKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEF 656

Query: 606  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
            Y GV+G+ P S++      +P   + VGQVV   I+   P ++++ +S    P+    D 
Sbjct: 657  YKGVRGWLPVSQMSEAFIQDPKEHFKVGQVVNVHILEVDPENQKLLVS-CKDPSAFGLDK 715

Query: 666  LVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLADHLEHATVMKSVIK 719
               L     GS+VSG   V+  +   V+V   G + K  +P   L D  + A   +S +K
Sbjct: 716  QAALKALSVGSIVSG--KVIQKSDDDVHVELDGSNLKAILPLGQLTD--KSANKSQSALK 771

Query: 720  P---GYEFDQLLVLD-NESSN-LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNI 772
                G     LLVLD NE    + LS+K SL+ + +  +L    +     + V G++ +I
Sbjct: 772  RIHMGQTLTDLLVLDKNERRRAITLSSKPSLVEAGKTGKLICTYADAKVGAEVPGFISSI 831

Query: 773  IETGCFVRFLGRLTG--FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
                  VRF G L G  F  R    D ++          QS+   I  ++ E  R+ +  
Sbjct: 832  RPGAVLVRFGGNLVGVMFKTRLPIEDQEKEAFG--LRKDQSITVRIRAIDLERTRLVVDP 889

Query: 831  KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 890
              +   S +A   +     E++ A  Q+          V+    G ++E K+   +D   
Sbjct: 890  LTAELPSNEAKPKK-----EKESARPQAHGP-------VQDITFGQIVEAKIVGIHD--T 935

Query: 891  VVSFEEHSDVYGFITHHQL------------------AGATVESGSVIQAAILDVAKAER 932
             ++ E    V G +   Q+                   G T+     ++A  L  +K  R
Sbjct: 936  QLNVETADKVQGRVDISQIFDSWDNIKDPEEPLSQFKKGETIR----VRAIGLHDSKDHR 991

Query: 933  LVDLSLKTV-FIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL- 990
             +  S ++   +  F    S+ +A   + K  + +DL V  T  A V     N L  ++ 
Sbjct: 992  FLAFSHRSYNSVLEFTAKASDIEAD--ELKPLSLEDLQVGSTHVAFVNNASRNGLWTNIS 1049

Query: 991  PEYNHSIGYASVSDYNTQKFPQ--KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETE 1048
            P     I    VSD +T K       F  G ++   V+A+     A R +L L A S++ 
Sbjct: 1050 PVVRGRINAMDVSD-DTSKMNDVINNFPIGTALKVRVIAV----DAKRGVLDLSARSDSS 1104

Query: 1049 TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 1108
             + +  + K +    G +V+     +   ++ +K G    G +H+ +++DD  +V  N  
Sbjct: 1105 AAVTWDSIKPNQVLAGCVVK-----VNERQIMVKLGSNVAGHVHLVDMSDDFGDV--NTL 1157

Query: 1109 SNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIG 1164
              +  G  +   ++   KSNK          LS +PS +  + S I    +     V  G
Sbjct: 1158 -KYDKGDAIQVSVVEVDKSNK-------RVRLSTRPSRVLNSSSPITDPEITSVKQVVSG 1209

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
              + G+V  V ++   + +  ++ A + I  S      L+E++  F + + V G VLS++
Sbjct: 1210 STIRGFVKHVADKGVFVLLGGNVSALVKI--SNLSDRFLKEWKEHFQVDQLVKGRVLSVD 1267

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIG 1282
            +    + L L+          VD +   ++T+  I    IV G+I K+      +VV   
Sbjct: 1268 EGAGQVELSLK-------SSVVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGS 1320

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISR 1321
             ++ G  H +E+ +  V D    Y  G  VK KVL + R
Sbjct: 1321 DNVSGLCHRSEMADSPVEDARKLYKAGDVVKAKVLTLDR 1359



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 163/364 (44%), Gaps = 41/364 (11%)

Query: 223  KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSG-----IDVKP- 276
            K LSLE +Q G    A+V +   +G   +   P   G +   ++++++      I+  P 
Sbjct: 1019 KPLSLEDLQVGSTHVAFVNNASRNGLWTNIS-PVVRGRINAMDVSDDTSKMNDVINNFPI 1077

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L+  V ++D  R V+ LS+  D+ +         ++ D + P  +++  V  + E  
Sbjct: 1078 GTALKVRVIAVDAKRGVLDLSARSDSSA--------AVTWDSIKPNQVLAGCVVKVNERQ 1129

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            +M+   +   G V +  + + F   N    Y++   +   ++ VD +++ V L+  P  +
Sbjct: 1130 IMVKLGSNVAGHVHLVDMSDDFGDVNTLK-YDKGDAIQVSVVEVDKSNKRVRLSTRPSRV 1188

Query: 397  HNRAPPSHVKVGDIYDQSKVVR-----------VDRGLGLLLDIPSTPVSTPAYVTISDV 445
             N + P  +   +I    +VV             D+G+ +LL       +  A V IS++
Sbjct: 1189 LNSSSP--ITDPEITSVKQVVSGSTIRGFVKHVADKGVFVLLG-----GNVSALVKISNL 1241

Query: 446  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVV 502
            ++  +++ ++ ++    V+ R+L      G     LK+S  +     + T+ D+KP  +V
Sbjct: 1242 SDRFLKEWKEHFQVDQLVKGRVLSVDEGAGQVELSLKSSVVDDNYKPLKTYKDIKPNQIV 1301

Query: 503  KGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 558
             GK+  V+ FGA +   G   V  LC    M++  +    K +K G  +  +VL +    
Sbjct: 1302 TGKIRKVEDFGAFIVVDGSDNVSGLCHRSEMADSPVEDARKLYKAGDVVKAKVLTLDRNK 1361

Query: 559  KRIT 562
            KRI+
Sbjct: 1362 KRIS 1365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 134/279 (48%), Gaps = 26/279 (9%)

Query: 1257 IHEGDIVGGRISK---ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
            +  G+IV   I K      GV GLVV++   + G VH T   ++ +  P   + EG  VK
Sbjct: 540  VPAGEIVSCMIEKVVVGGQGVSGLVVKVAEGITGYVHETHFADVRLQHPEKKFREGMTVK 599

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
             +VL +    R    + L+L+ +L      NS       DTP   ++  +++       G
Sbjct: 600  ARVLSVRPRKR---QMRLTLKKTL-----VNS-------DTP--IIKSFDEVEVGQQALG 642

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             + +++  G  I   + +   + +S +S+ +++ P++ F +G++V   +L V+P ++++ 
Sbjct: 643  TISDISPHGARIEFYKGVRGWLPVSQMSEAFIQDPKEHFKVGQVVNVHILEVDPENQKLL 702

Query: 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            V+ K  D       +   L  L VG IV G++ +     + + ++ +NL  +  + +L++
Sbjct: 703  VSCK--DPSAFGLDKQAALKALSVGSIVSGKVIQKSDDDVHVELDGSNLKAILPLGQLTD 760

Query: 1494 DHVDNIETIYR---AGEKVKVKILKVDKEKRRISLGMKS 1529
               +  ++  +    G+ +   +L +DK +RR ++ + S
Sbjct: 761  KSANKSQSALKRIHMGQTL-TDLLVLDKNERRRAITLSS 798



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 6/170 (3%)

Query: 499  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
            G  ++G V  V   G  V   G V AL  + ++S+  + +  + F+V   +  RVL V  
Sbjct: 1209 GSTIRGFVKHVADKGVFVLLGGNVSALVKISNLSDRFLKEWKEHFQVDQLVKGRVLSVDE 1268

Query: 558  -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF--VRFYNGVQGFAP 614
             + ++ ++ K ++V      L +Y +     I  G I K+E  G F  V   + V G   
Sbjct: 1269 GAGQVELSLKSSVVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGSDNVSGLCH 1328

Query: 615  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
            RSE+   P  +   +Y  G VVK ++++     +RI  SF +KP    +D
Sbjct: 1329 RSEMADSPVEDARKLYKAGDVVKAKVLTLDRNKKRI--SFGLKPAYFDDD 1376



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 122/585 (20%), Positives = 245/585 (41%), Gaps = 105/585 (17%)

Query: 993  YNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSS 1052
            Y H   +A V      + P+K+F  G +V A V+++       RL L    ++    S +
Sbjct: 574  YVHETHFADVR----LQHPEKKFREGMTVKARVLSVRPRKRQMRLTLKKTLVN----SDT 625

Query: 1053 KRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFK 1112
               K     +VG      I++I P   R++F  G  G + ++++++     +++   +FK
Sbjct: 626  PIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVRGWLPVSQMSE---AFIQDPKEHFK 682

Query: 1113 IGQTVTARIIAKSNKPDMKKSFLWELSIK-PSMLTVSEIGS-KLLFEECDVSIGQRVTGY 1170
            +GQ V   I+     P+ +K     +S K PS   + +  + K L      S+G  V+G 
Sbjct: 683  VGQVVNVHILEVD--PENQKLL---VSCKDPSAFGLDKQAALKAL------SVGSIVSGK 731

Query: 1171 VY-KVDNEWALLTISRHLKAQL---FILDSAYEPSELQEFQRRFHIGKAVTG-HVLSINK 1225
            V  K D++  +     +LKA L    + D +   S  Q   +R H+G+ +T   VL  N+
Sbjct: 732  VIQKSDDDVHVELDGSNLKAILPLGQLTDKSANKS--QSALKRIHMGQTLTDLLVLDKNE 789

Query: 1226 EKKLLRLVLRP--FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV--GGLVVQI 1281
             ++ + L  +P   + G + K +    D           VG  +   +S +  G ++V+ 
Sbjct: 790  RRRAITLSSKPSLVEAGKTGKLICTYADAK---------VGAEVPGFISSIRPGAVLVRF 840

Query: 1282 GPHLYGRVHFTELKNICVSDPLSGYDEGQF---------VKCKVLEISRTVRGTFHVELS 1332
            G +L G +  T L       P+   ++  F         V+ + +++ RT          
Sbjct: 841  GGNLVGVMFKTRL-------PIEDQEKEAFGLRKDQSITVRIRAIDLERT---------- 883

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEK--------IEDLSPNMIVQGYVKNVTSKGCF 1384
             R  +D +    +++L ++   P K  E         ++D++   IV+  +  +      
Sbjct: 884  -RLVVDPL----TAELPSNEAKPKKEKESARPQAHGPVQDITFGQIVEAKIVGIHDTQLN 938

Query: 1385 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL-------------SKR 1431
            +  + K+  +V +S + D +    + E P+ +   G  + V  +             S R
Sbjct: 939  VETADKVQGRVDISQIFDSWDNIKDPEEPLSQFKKGETIRVRAIGLHDSKDHRFLAFSHR 998

Query: 1432 -----VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1486
                 +E T K SD   A + +  +L +L VG   +  +      GL+  I    + G  
Sbjct: 999  SYNSVLEFTAKASDIE-ADELKPLSLEDLQVGSTHVAFVNNASRNGLWTNISPV-VRGRI 1056

Query: 1487 HVSELSED--HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            +  ++S+D   ++++   +  G  +KV+++ VD ++  + L  +S
Sbjct: 1057 NAMDVSDDTSKMNDVINNFPIGTALKVRVIAVDAKRGVLDLSARS 1101


>gi|367050128|ref|XP_003655443.1| hypothetical protein THITE_2119136 [Thielavia terrestris NRRL 8126]
 gi|347002707|gb|AEO69107.1| hypothetical protein THITE_2119136 [Thielavia terrestris NRRL 8126]
          Length = 1818

 Score =  346 bits (887), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 336/1312 (25%), Positives = 616/1312 (46%), Gaps = 168/1312 (12%)

Query: 686  VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKY 743
            ++  IA G S G +P  HLAD HL+H    +   + G +    ++  N + + + L+ K 
Sbjct: 562  LIVRIADGIS-GLVPEAHLADVHLQHP---EKKFREGMKVKARVLSTNPAMHQIRLTLKK 617

Query: 744  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
            +L+NS          +       G + ++++ G  V+F G+L GF P S+  +    D  
Sbjct: 618  TLVNSEAPPIKSYDELAVGLQAPGTIVSVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPK 677

Query: 804  KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
            + + VGQ+V   +L  + +  R+ +S K               F LE+++A+        
Sbjct: 678  EHFRVGQTVSIYVLSFDPDASRLIVSCKDPSA-----------FGLEKQLAL-------- 718

Query: 864  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA- 922
                  +   +G ++  KV +  +  + V   + S        H    +  ++ S ++  
Sbjct: 719  ------KKLQVGQLVSAKVTQKTEDDIFVELADSSLKAILPVGHLTDKSVSKTQSALKKI 772

Query: 923  ---------AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
                      +L+  +  R + LS K   +          QA K+ +      D  +   
Sbjct: 773  HVNQTLSELVVLEKNEGRRSITLSHKPSLV----------QASKEGKLLAHIDDARLGDQ 822

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSST 1033
            V   V  +      +       ++   S+   + +  P       QS++  + ++     
Sbjct: 823  VPGFVRNITATAAFVQFAGKLTALLPKSMMPSDVRDKPSFGMHKSQSLVVKITSI--DKD 880

Query: 1034 AGRLLLLL-KAISETETSSSKRAKKK-SSYD----------VGSLVQAEITEIKPLELRL 1081
             GRL++ +  A  E   +S K A+K  +S D          VG L +A +  +K  +L +
Sbjct: 881  LGRLVVAIPSAAGEAAKTSQKNAEKAVNSVDDSIGSIDDLAVGKLTKARVKSVKETQLNV 940

Query: 1082 KFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKS 1133
            +      GRI ++++ D   ++ +       FK G  +  R++    A++++  P   +S
Sbjct: 941  QIADNIQGRIDVSQIFDKWEDIPDPKRPLKRFKAGDILPVRVLGVHDARNHRFLPISHRS 1000

Query: 1134 F--LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1191
               + ELS KPS L    +   L  E+ +         +V  V +    + +S +++ ++
Sbjct: 1001 SHSVLELSTKPSDLKGDAMPEPLTLEKIEPQSTH--LAFVNNVTSSHLWVNLSPNVRGRI 1058

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
               +++ + S++   ++ F +G A+   VL+++ +K+ + L  R      +    ++S D
Sbjct: 1059 KATEASDDLSKVASLEKSFPVGCALQVRVLAVDADKERVDLSAR------TGAAPELSWD 1112

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN-ICVSDPLSGYDEGQ 1310
             +Q    +G ++ G+++K+      + VQ+   + G VH  +L +    ++PL+ + + +
Sbjct: 1113 KVQ----QGMVLPGKVTKV--NDRQVFVQLSELVAGPVHLVDLADDYDEANPLA-HSKNE 1165

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
             V+  ++EI ++ +    + LS+R S           L++ +    K + K   L    +
Sbjct: 1166 IVRVAIVEIDKSNK---KLRLSMRPS---------RVLNSSLPVKDKEITKGTKLEVGDV 1213

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            V+G+V+NV+ KG F+ L     A V + +LSD Y++  ++ F + +LV GR++SV     
Sbjct: 1214 VRGFVRNVSDKGLFVSLGGDAVALVQIKDLSDSYLKDWKEHFQVDQLVKGRIVSVA--DG 1271

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVS 1489
            R+ ++LK S        ++  +S+L  G IV G++++VE +G FI I+ + NL GLCH S
Sbjct: 1272 RLRMSLKES-VVEKDFVKLTTISDLKEGQIVTGRVRKVEEFGAFIAIDRSDNLSGLCHRS 1330

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSS------ 1543
            E+++  V + +T+Y  G++VK ++LKVD E++RISLG+K SYFK+   +           
Sbjct: 1331 EMADRAVKDAKTLYNEGDRVKARVLKVDLEQKRISLGLKPSYFKDGEADDVDVDTDDDED 1390

Query: 1544 --------EEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE-DGGS---LVLAQIESR 1591
                    EE  DE + + G     +LL   S A +D + ESE DGGS   +  A  E  
Sbjct: 1391 GGAALDGREESEDEKMSDAGG----ALLIAGSDA-EDSEDESEVDGGSDVEMAEAPAEGL 1445

Query: 1592 ASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEER 1651
            A+       LD    D            +        +     KK K+ RE +    +  
Sbjct: 1446 AA-------LDAGGFDWTADALDADDKANADIADGPPS-----KKAKKRREPQGIVDKTA 1493

Query: 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1711
             L+ + P+T  ++ERL+   P+SS +WI YMA  + + D+  AR +AERA++TINI+EE 
Sbjct: 1494 ELDINGPQTSSDYERLLLGQPDSSELWIAYMASQMQVNDLASARQVAERAIKTINIKEET 1553

Query: 1712 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1771
            EKLN+W+AY NLE  YG    E V +VF+RA  Y D ++VH  L  +Y ++ ++K ADEL
Sbjct: 1554 EKLNVWIAYLNLEVAYGT--AETVDEVFKRACTYNDDQEVHERLASIYIQSGKHKEADEL 1611

Query: 1772 LYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLP-------RHKHIKFI 1821
              +++KK+   S  VW      L     Q +  +A+++RA   L           ++  +
Sbjct: 1612 FERILKKYGSRSPHVWTNYAHFLHVTAGQPDRARALLKRATQVLSSSTTVAGNQVYLSLL 1671

Query: 1822 SQTAILEFKNGVADR--GRSMFEGILSEYPKRTDLWSIYLDQEI-----------RLGDV 1868
             + A LEF++   DR  GR++FE +L+ YP++ DLW+  LD E                 
Sbjct: 1672 PKFAALEFRSPHGDREQGRTLFESLLAAYPRKFDLWNQLLDLETSPSSLSSSPAAAADQA 1731

Query: 1869 DLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
             ++R LFER   +  L P++ K  F+++ ++E+  G+ +  E V  KA+E+ 
Sbjct: 1732 VVVRDLFERGSKVKGLKPRQAKAWFRRWAKWEEEHGDAKSRERVSAKAVEWA 1783



 Score =  234 bits (597), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 256/903 (28%), Positives = 412/903 (45%), Gaps = 78/903 (8%)

Query: 2   AASSRKSQKKSSKDGP----KFNKASKNQFKNSKKQINDAVEAQDLALPP----DDDVPV 53
            A++ KS + +++  P    K ++++K+  K   KQ   A  A+ LA P      ++ P+
Sbjct: 12  GAAASKSVRTATEARPAKRAKQSESTKDDGKKGAKQSKPA--AKPLAAPLVTALKEEEPL 69

Query: 54  FPRGGGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGGG  LT  E+ +I   A+ D  FE    G       KKK+ + +A+ET     +  
Sbjct: 70  FPRGGGSVLTPLEQKQISIQAKRDVLFEEESAGKKADKAAKKKRRKSRADETATK-PTKD 128

Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG------------ 159
            D +          +  K +  G  + G V  +N  D+ + LP  L G            
Sbjct: 129 EDAVK------VESLNFKRLVKGSLVLGTVCAINPLDIALALPNNLVGHVPITAISETLT 182

Query: 160 --LARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSL 216
             L  +A+  D   ++E E  +D  L ++FH+GQ V   V   LD+      +R I LSL
Sbjct: 183 RRLQASAEKEDDAGESEDENADDVDLKSLFHMGQYVRAYVASTLDESTPGKSRRHIELSL 242

Query: 217 RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID- 273
             S    G+S + + E   L A V S+EDHG+++  G+   S  GFLPR  L ++   D 
Sbjct: 243 EPSHANTGISEQDLVEHCTLMASVVSVEDHGFVMDIGISESSVKGFLPRKQLDKSIPEDS 302

Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
           ++PG +L  VV       KVV LS+ PD +        +  +I   +PG      +  + 
Sbjct: 303 IQPGSVLLCVVTGKAANGKVVQLSTLPDRLGNPKHTPSEATTIGSFLPGTAADVLISEVS 362

Query: 334 ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTL 391
           ++GV+   + +   T D+ H        +  + Y    +V ARI+   PT++   +G++L
Sbjct: 363 QHGVIGKVMGHLDVTADLVHSGAGPDGVDIVDKYKVGSRVKARIICTFPTAKMPKLGISL 422

Query: 392 NPYLLHNRAPPSHVKVGD------------IYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
            P++L  R P + ++ G             I DQ  V RV+ G+GL +D+    V  P +
Sbjct: 423 LPHVLSLR-PKTTIQDGQEALPTQILAHSAIVDQCTVQRVEPGIGLYVDVGVQGV--PGF 479

Query: 440 VTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDV 496
           V IS V + +V  L      YK GS    R++G+   +G+    L+    E       DV
Sbjct: 480 VHISRVKDGKVDSLFENSGPYKIGSVHPGRVVGYNSFDGMFLLSLEKHVLEQPFLRIEDV 539

Query: 497 KPGMVVKGK----VIAVDSFGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
             G VV G     VI  D  G  IV+   G+  L P  H+++  +  P KKF+ G ++  
Sbjct: 540 PVGAVVPGVVEKLVINQDGLGGLIVRIADGISGLVPEAHLADVHLQHPEKKFREGMKVKA 599

Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
           RVL       +I +T KKTLV S+   + SY E    L   G I  + +HG  V+FY  +
Sbjct: 600 RVLSTNPAMHQIRLTLKKTLVNSEAPPIKSYDELAVGLQAPGTIVSVLQHGAIVQFYGQL 659

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--- 666
           +GF P SE+      +P   + VGQ V   ++S  P + R+ +S         E  L   
Sbjct: 660 RGFLPVSEMSEAYIHDPKEHFRVGQTVSIYVLSFDPDASRLIVSCKDPSAFGLEKQLALK 719

Query: 667 -VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GY 722
            +++G LVS  V   T + + V  +A    K  +P  HL D  +  +  +S +K      
Sbjct: 720 KLQVGQLVSAKVTQKTEDDIFVE-LADSSLKAILPVGHLTD--KSVSKTQSALKKIHVNQ 776

Query: 723 EFDQLLVLD-NES-SNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCF 778
              +L+VL+ NE   ++ LS K SL+ ++++  L +          V G+V NI  T  F
Sbjct: 777 TLSELVVLEKNEGRRSITLSHKPSLVQASKEGKLLAHIDDARLGDQVPGFVRNITATAAF 836

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V+F G+LT   P+S      R   S   +  QS+   I  ++ + GR+ +++  +   + 
Sbjct: 837 VQFAGKLTALLPKSMMPSDVRDKPSFGMHKSQSLVVKITSIDKDLGRLVVAIPSAAGEAA 896

Query: 839 DAS 841
             S
Sbjct: 897 KTS 899



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 172/861 (19%), Positives = 325/861 (37%), Gaps = 168/861 (19%)

Query: 131  ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVG 190
            ++ G++  G +  V +   ++   G LRG    ++  +  + +  E          F VG
Sbjct: 633  LAVGLQAPGTIVSVLQHGAIVQFYGQLRGFLPVSEMSEAYIHDPKEH---------FRVG 683

Query: 191  QLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLY---KGLSLETVQEGMVLTAYVKSIEDHG 247
            Q VS  VL  D D       ++ +S +    +   K L+L+ +Q G +++A V    +  
Sbjct: 684  QTVSIYVLSFDPDAS-----RLIVSCKDPSAFGLEKQLALKKLQVGQLVSAKVTQKTEDD 738

Query: 248  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL--------LLQGVVRSIDRTRKVVYLSSD 299
              +     S    LP  +L + S    +  L        L + VV   +  R+ + LS  
Sbjct: 739  IFVELADSSLKAILPVGHLTDKSVSKTQSALKKIHVNQTLSELVVLEKNEGRRSITLSHK 798

Query: 300  PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
            P  V    +K+ K ++    +    +  +V   + N    +    F G +     ++  P
Sbjct: 799  PSLVQ--ASKEGKLLA---HIDDARLGDQVPGFVRNITATAAFVQFAGKLTALLPKSMMP 853

Query: 360  T-TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR 418
            +    K  +  HK   ++ L V                                  K+  
Sbjct: 854  SDVRDKPSFGMHK---SQSLVV----------------------------------KITS 876

Query: 419  VDRGLG-LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
            +D+ LG L++ IPS   +  A  T    AE+ V  ++     GS           ++ LA
Sbjct: 877  IDKDLGRLVVAIPSA--AGEAAKTSQKNAEKAVNSVDDSI--GS-----------IDDLA 921

Query: 478  TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 537
             G L  +  + +  T  +V+    ++G++     F      P               +  
Sbjct: 922  VGKLTKARVKSVKETQLNVQIADNIQGRIDVSQIFDKWEDIP---------------DPK 966

Query: 538  KPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
            +P K+FK G  L  RVLGV   R    + ++H+ +    +L+   S  +  D +     +
Sbjct: 967  RPLKRFKAGDILPVRVLGVHDARNHRFLPISHRSSHSVLELSTKPSDLKG-DAMPEPLTL 1025

Query: 594  TKIEKHGCFVRFYNGVQG------FAP------RSELGLDPGCEPSSM---YHVGQVVKC 638
             KIE     + F N V         +P      ++    D   + +S+   + VG  ++ 
Sbjct: 1026 EKIEPQSTHLAFVNNVTSSHLWVNLSPNVRGRIKATEASDDLSKVASLEKSFPVGCALQV 1085

Query: 639  RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 698
            R+++      R++LS           D V+ G ++ G V  V  N   V+V       G 
Sbjct: 1086 RVLAVDADKERVDLSARTGAAPELSWDKVQQGMVLPGKVTKV--NDRQVFVQLSELVAGP 1143

Query: 699  IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYS-LINSAQQLP-- 753
            +    LAD  + A  +        E  ++ +++ + SN  L LS + S ++NS+  LP  
Sbjct: 1144 VHLVDLADDYDEANPLA---HSKNEIVRVAIVEIDKSNKKLRLSMRPSRVLNSS--LPVK 1198

Query: 754  ----SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
                +  + +    VV G+V N+ + G FV   G            D    D  + + V 
Sbjct: 1199 DKEITKGTKLEVGDVVRGFVRNVSDKGLFVSLGGDAVALVQIKDLSDSYLKDWKEHFQVD 1258

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
            Q V+  I+ V    GR+ +SLK+S         +++ F+    I+ L+            
Sbjct: 1259 QLVKGRIVSVAD--GRLRMSLKESV--------VEKDFVKLTTISDLKE----------- 1297

Query: 870  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQA 922
                 G ++ G+V +  +FG  ++ +   ++ G     ++A   V+        G  ++A
Sbjct: 1298 -----GQIVTGRVRKVEEFGAFIAIDRSDNLSGLCHRSEMADRAVKDAKTLYNEGDRVKA 1352

Query: 923  AILDVAKAERLVDLSLKTVFI 943
             +L V   ++ + L LK  + 
Sbjct: 1353 RVLKVDLEQKRISLGLKPSYF 1373



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 8/150 (5%)

Query: 1382 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            G  + ++  +   V  ++L+D +++ PEK+F  G  V  RVLS  P   ++ +TLK    
Sbjct: 561  GLIVRIADGISGLVPEAHLADVHLQHPEKKFREGMKVKARVLSTNPAMHQIRLTLK---- 616

Query: 1442 RTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
            +T   SE   I +   L VG    G I  V  +G  +      L G   VSE+SE ++ +
Sbjct: 617  KTLVNSEAPPIKSYDELAVGLQAPGTIVSVLQHGAIVQFYG-QLRGFLPVSEMSEAYIHD 675

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             +  +R G+ V + +L  D +  R+ +  K
Sbjct: 676  PKEHFRVGQTVSIYVLSFDPDASRLIVSCK 705



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 138/315 (43%), Gaps = 40/315 (12%)

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  LQ  V ++D  ++ V LS+      +        +S D +  GM++  +V  + +  
Sbjct: 1080 GCALQVRVLAVDADKERVDLSARTGAAPE--------LSWDKVQQGMVLPGKVTKVNDRQ 1131

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            V +       G V +  L + +   N    +++++ V   I+ +D +++ + L++ P  +
Sbjct: 1132 VFVQLSELVAGPVHLVDLADDYDEAN-PLAHSKNEIVRVAIVEIDKSNKKLRLSMRPSRV 1190

Query: 397  HNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
             N + P         + ++VGD+      VR     GL + +    V   A V I D+++
Sbjct: 1191 LNSSLPVKDKEITKGTKLEVGDVV--RGFVRNVSDKGLFVSLGGDAV---ALVQIKDLSD 1245

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGM 500
              ++  ++ ++    V+ RI+       +A G L+ S  E +V        T SD+K G 
Sbjct: 1246 SYLKDWKEHFQVDQLVKGRIVS------VADGRLRMSLKESVVEKDFVKLTTISDLKEGQ 1299

Query: 501  VVKGKVIAVDSFGAIVQF--PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
            +V G+V  V+ FGA +       +  LC    M++  +      +  G  +  RVL V  
Sbjct: 1300 IVTGRVRKVEEFGAFIAIDRSDNLSGLCHRSEMADRAVKDAKTLYNEGDRVKARVLKVDL 1359

Query: 557  KSKRITVTHKKTLVK 571
            + KRI++  K +  K
Sbjct: 1360 EQKRISLGLKPSYFK 1374


>gi|403260160|ref|XP_003922550.1| PREDICTED: protein RRP5 homolog [Saimiri boliviensis boliviensis]
          Length = 1838

 Score =  345 bits (886), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 381/1470 (25%), Positives = 655/1470 (44%), Gaps = 191/1470 (12%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
            FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8    FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKVPAKTKKLKMEKRE---- 63

Query: 110  LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                  S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64   ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169  PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                  NE    E  L     LP +F  G LV C+V  L   ++  GK+ + LSL    +
Sbjct: 118  AYTKKLNEQVTQEQPLKDLFHLPELFSPGMLVRCVVSSLGVTER--GKKSVKLSLNPKNV 175

Query: 222  YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-----RNNLAENSGIDVKP 276
             + LS E ++ GM+LT  V S+EDHGY++  G+     FLP      N   +N G  +K 
Sbjct: 176  NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQENIRQKNKGAKLKV 235

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L  ++  +     VV+LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236  GQYLNCIIEEVKGNGGVVHLSIGHSEVSAAIATEEQSWTLNNLLPGLVVKAQVQKVTPFG 295

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            +ML+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296  LMLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVKACILCVHPRTRVVRLSLRPIFL 350

Query: 397  HNRAPPSHVK---VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                P S +    +G + +   V    +  G +  +    +   AY  +S +++ +    
Sbjct: 351  QPGRPLSRLSCQHLGAVLNDVPVHGFFKKAGAIFRLKDGVL---AYARLSHLSDSKNVFS 407

Query: 454  EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             + +K G+  + RI+ +  ++ LA   L+ S  E     + D+KPG VVKG V+ +  +G
Sbjct: 408  PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGAVVKGTVLTIKPYG 467

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSK 573
             +V+    ++ L P  H+++  +  P KK+ +G E       VK +RI  + K       
Sbjct: 468  MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDE-------VKCRRINSSTK------- 513

Query: 574  LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
              +++ +   + RL       ++       R  +G    A RS   +   C    ++H  
Sbjct: 514  --VVNWFIIGSVRLDAKPARKEL-------RCTSGRH--AARSAGRVGQAC---VVFH-- 557

Query: 634  QVVKCRIMSSIPASRRINLSFMM----KPTR------VSEDDLVKLGSLVSGVVDVVTPN 683
            QVVK  +++S P+  R+ LSF +    +P +        +   + +G LV   V   T +
Sbjct: 558  QVVKVAVLNSEPSKERMLLSFKLLRDPEPKKEPAGHNQKKGKAINVGQLVDVKVLEKTKD 617

Query: 684  AVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKY 743
             + V V+    +   +PT HL+DH+ +  ++   ++ G    ++L L     ++LL  K 
Sbjct: 618  GLEVAVLPHN-TCAFLPTSHLSDHVTNGPLLHHWLQAGDTLHRVLCLSQSEGHILLCRKP 676

Query: 744  SLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
            +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D     
Sbjct: 677  ALVSAVEGGQDPKNFSEIHPGMLLVGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTS 736

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS- 858
             S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +      L +  E++  ++S 
Sbjct: 737  TSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQGVRSL 796

Query: 859  -SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
             S  +   ++ +     G  ++  V E   D  VV S     ++    + +   G  VES
Sbjct: 797  MSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPNLVLRASRYHRGGQEVES 856

Query: 917  GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
            G   +  IL+V   +  V +SL    +        NR+A+K ++  E       HQ   A
Sbjct: 857  GQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------HQ---A 898

Query: 977  IVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAG 1035
            IV+ +++++ + SL    H + ++  S  N T +F  ++   GQ V  T+       T  
Sbjct: 899  IVQHLEKSFAIASLVATGHLVAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG- 957

Query: 1036 RLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEITEIKP 1076
             LLL ++  +   T    R                     KK +  +G +V   +  IKP
Sbjct: 958  -LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKP 1016

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK-SFL 1135
              + +    G  G IH + + DD         +  K+G+TVTAR+I      DMK   FL
Sbjct: 1017 THVVVTLKDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DMKTFKFL 1072

Query: 1136 -----------WELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNE 1177
                        ELS++PS L    T     S    E+      GQ VT ++  Y V  +
Sbjct: 1073 PISHPRFVRTVPELSVRPSELEDGHTALNTDSVSPMEKIKQYQAGQTVTCFLKKYNVVKK 1132

Query: 1178 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
            W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  LRL L   
Sbjct: 1133 WLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLRLSL--- 1189

Query: 1238 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
                      I    ++    EG++  GR+ K+     GL V       G V    + + 
Sbjct: 1190 ----------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSLFHVSDS 1234

Query: 1298 CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1357
                PL  +   + V+C +L     V     + LSLR      SS  + +  + V+ P  
Sbjct: 1235 YSEMPLEDFVPQKVVRCYILSAEDNV-----LTLSLR------SSRTNPETKSKVEDP-- 1281

Query: 1358 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------ 1411
             +  I+D+    +++GYV+++   G F  L   +   V L+        SP K+      
Sbjct: 1282 EINSIQDIKEGQLLRGYVRSIQPHGVFFGLGPSV---VGLARYPYVSQHSPSKKALYNKH 1338

Query: 1412 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
             P GKL+  RVL +      VE++    D+
Sbjct: 1339 LPEGKLLTARVLRLNHQKNLVELSFLPGDT 1368



 Score =  289 bits (740), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 147/331 (44%), Positives = 222/331 (67%), Gaps = 16/331 (4%)

Query: 1593 SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERL 1652
            ++PPL  + D E+ +  +  +Q            +K ++  ++ EK++ E+E+   EE L
Sbjct: 1516 ALPPLAESSDSEEDEKPHQATQ------------KKKSKKERELEKQKAEKELSRIEEAL 1563

Query: 1653 LEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1711
            ++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE 
Sbjct: 1564 MDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQ 1623

Query: 1712 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1771
            EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL
Sbjct: 1624 EKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGEL 1681

Query: 1772 LYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFK 1830
              +M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+
Sbjct: 1682 YNRMLKRFRQEKAVWIKYGAFLLRRSQAGASHCVLQRALECLPSKEHVDVIAKFAQLEFQ 1741

Query: 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1890
             G  +R +++FE  L+ YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PKKMKF
Sbjct: 1742 LGDPERAKAIFENTLTTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKKMKF 1801

Query: 1891 LFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
             FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1802 FFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1832



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
            N S +H G +++G +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V 
Sbjct: 690  NFSEIHPGMLLVGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVV 748

Query: 1511 VKILKVDKEKRRISLGMKSS 1530
             K+  VD+EK+R+ L ++ S
Sbjct: 749  AKVTNVDEEKQRMLLSLRLS 768



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 104/209 (49%), Gaps = 22/209 (10%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G    +SS     +   G H  K+E+     +  G V  VT ++G  +
Sbjct: 1165 FRVGQALRATVVG---PDSSKAFLRLSLIGPH--KLEE---GEVAMGRVVKVTPNEGLTV 1216

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V L ++SD Y E P ++F   K+V   +LS E     + ++L++S +   +
Sbjct: 1217 SFPFGKIGTVSLFHVSDSYSEMPLEDFVPQKVVRCYILSAE--DNVLTLSLRSSRTNPET 1274

Query: 1446 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
            +S     EIN++ ++  G ++ G ++ ++ +G+F  +   ++VGL     +S+ H  + +
Sbjct: 1275 KSKVEDPEINSIQDIKEGQLLRGYVRSIQPHGVFFGL-GPSVVGLARYPYVSQ-HSPSKK 1332

Query: 1501 TIYRA----GEKVKVKILKVDKEKRRISL 1525
             +Y      G+ +  ++L+++ +K  + L
Sbjct: 1333 ALYNKHLPEGKLLTARVLRLNHQKNLVEL 1361


>gi|170085507|ref|XP_001873977.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651529|gb|EDR15769.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1468

 Score =  343 bits (881), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 338/1222 (27%), Positives = 567/1222 (46%), Gaps = 155/1222 (12%)

Query: 754  SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
            S  + + P ++V   +  I  TG  ++ LG   G         G +A     Y VG+ VR
Sbjct: 338  SSVTSVLPGALVQSLITAIHPTGLNLQVLGFFEGTVDPVHLKKGGKA-----YQVGKKVR 392

Query: 814  SNIL-DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV-EG 871
            + IL + +S   R  L+L     + +               A    SK   +E K + E 
Sbjct: 393  ARILYEYSSSPPRFALALVDHLTNLS---------------APCIKSKELPAETKSIQEA 437

Query: 872  FIIGSVIEGK--VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES---------GSVI 920
            F +G++IE    +    + G++V  E    V GF+    L+   V S         G++ 
Sbjct: 438  FPLGTIIESAKVLRVETERGIIV--EVQPGVEGFVHISHLSEDHVPSLSSTGPWKPGTLH 495

Query: 921  QAAILDVAKAERLVDLSLKTVFID-RFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 979
            +A +      + L+ LS K   I+ +F + +                D+ V + +   ++
Sbjct: 496  RARVTGYFSFDGLLQLSFKPSIIEQKFLQVS----------------DVEVGEVIKGTIK 539

Query: 980  IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLL 1039
             + ++ L +SL      + + +     T K P+K+F  G  +   V+A+       R  +
Sbjct: 540  KLTDSGLFVSLSRSIDGVVWPNHYADITLKHPEKRFKPGAGIKCKVLAV----DVYRKRI 595

Query: 1040 LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDD 1099
             L A      S+     K      G +  A I ++    L ++F       +   E++D 
Sbjct: 596  SLTAKKTLLDSNLPILSKIDDAKPGFVTHAVIFKVYGNHLLVEFYNNLKAIVPAKEISDI 655

Query: 1100 KSNVVENLFSNFKIGQTVTARIIA-KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1158
              N    L  +F IG+ V  RII+  + +  +  S    L  K     VS+I +      
Sbjct: 656  PIN---KLSDSFPIGRVVRTRIISVDTEQGRIVASIRQALGNKDP---VSDISA------ 703

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTIS-RHLKAQLFILDSA-YEPSELQEFQRRFHIGKAV 1216
              V IG  V G + ++  + AL+ +    ++A L + + A +    L E   +  +G  +
Sbjct: 704  --VEIGNIVKGSISEIHKDNALIILQPTQIRALLSLKNLANFRQISLGELLVKLKVGDEL 761

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               V+      K + +V    +     K   +S D+++     G IVGGR+++       
Sbjct: 762  DELVVVTRNPDKGVVIVANTPKKVPLLKGSSVSIDSLKV----GQIVGGRVTRHTRHSA- 816

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG-------QFVKCKVLEISRTVRGTFHV 1329
             ++++ P + G +H T++ +         YD G         ++  ++EI R+      +
Sbjct: 817  -LIKVTPQIGGTLHPTDISD--------DYDMGLVLPPVDSILRAAIIEIDRSKN---QL 864

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
             LS R S     ST        VD    H   I D+     V+G +K+V   G F+ + R
Sbjct: 865  RLSTRHSKMYPESTKKI-----VDQEIIH---IFDIHVGDTVRGSIKSVADHGLFVTIGR 916

Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
             +DA+V +  L D +VE  +  F   ++V G +LSV+  +++VE+TLK+ D  T + S +
Sbjct: 917  DIDARVQIRELFDDFVEDWKARFQEKQIVKGLILSVDLQTRKVEMTLKSGDLSTRNGSSV 976

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE---TIYRAG 1506
              L++L VG  V G +KR+E YGLFI I+ + L GLCH S+LS+     +      +  G
Sbjct: 977  G-LADLKVGQKVDGLVKRIEDYGLFINIDRSKLNGLCHKSQLSDSQGAGVSFALNSFHEG 1035

Query: 1507 EKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSS----- 1561
            ++VK  I+ +DK   RISL +K S F N+ D        +++E I E     ++      
Sbjct: 1036 DRVKAVIIGIDKA--RISLSLKPSLF-NEED---FQEGADTNEPIPEPSGVIKNDNVETS 1089

Query: 1562 -----------LLENSSVAVQDMDMESEDGGSLVLA----QIESRASVPPLEVNLDDEQP 1606
                         E     V D+D++     S  ++    ++ S A +P L         
Sbjct: 1090 DDDEDEEVDISDSEGEGDDVMDVDIDQPLAHSRPVSAQKPRVVSTAPIPSLA-------- 1141

Query: 1607 DMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------AP 1658
             +  G   + G        D ++       E +E  +       + +E D        +P
Sbjct: 1142 -LSGGFQWSFGEQQLGDDYDAESPSSESDLEGDEYGKRKTKRRRKAIEHDLTAEMHTKSP 1200

Query: 1659 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1718
             +  +FERL+  SPNSS++WI+YM+F L +++VEK+R I  RA++TIN REE EKLN+W+
Sbjct: 1201 ESNADFERLLLGSPNSSYLWIQYMSFQLQLSEVEKSREIGRRAIETINFREEQEKLNVWI 1260

Query: 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1778
            A  NLEN YG    E++   F++A +  D K VHL L  +++++++ + A+E   +  KK
Sbjct: 1261 ALLNLENVYGT--LESLETTFKQAARANDSKTVHLRLASIFDQSDKLEKAEEQFNRTCKK 1318

Query: 1779 FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837
            F  S KVW    +  LK+   E  + ++ R+LLSL + KH+K IS+ A LE+K G  +RG
Sbjct: 1319 FGQSSKVWTLFSEYYLKRGNMEESRKLLPRSLLSLDKRKHLKTISRFAQLEYKYGDPERG 1378

Query: 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1897
            R++FEGI+  +PKR DLWSIY+D E    ++  +R LFER ++L +   K K  FKK+LE
Sbjct: 1379 RTLFEGIVDSHPKRWDLWSIYMDMEGVQKNIQGLRNLFERVLTLHMTSHKAKSFFKKWLE 1438

Query: 1898 YEKSVGEEERIEYVKQKAMEYV 1919
             EK +G+EE +  VK KA+E+ 
Sbjct: 1439 LEKRIGDEEGVSDVKTKAVEWT 1460



 Score =  194 bits (492), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 200/761 (26%), Positives = 330/761 (43%), Gaps = 110/761 (14%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           M A  R  + +S+K+G K  K + ++ +         + A++L          FPRGGG 
Sbjct: 1   MPAQKRSMENESTKNGSKKLKIADSKHERHTPSSGAPLRAEELD---------FPRGGGT 51

Query: 61  SLTQRERDEIHAEVDAE-----FE-------AVERGLHKKNKKKKKKTERKANETVDDLG 108
           S T  E   I AE   E     FE       A +  + KK+KK+K+              
Sbjct: 52  SFTPLEVKTIRAEAVKEANVELFEVRISFSYAKDTHVAKKSKKRKRGP------------ 99

Query: 109 SLFGDGISGKLPRYANKITL-----KNISAGMKLWGVVAEV----------NEKDLVICL 153
               DG +      AN++ +     K ++ GMK++G +  +          N+    + +
Sbjct: 100 ----DGHTHPAGENANRVRIEHLNYKRLNVGMKIFGQIVGILPLSLLVSLPNQLSAHVPI 155

Query: 154 PGGLRGLARAADALDPILDNEIEANEDNL---------LPTIFHVGQLVSCIV------- 197
                    A + +D I +     +E+           L  IF VGQ V  +V       
Sbjct: 156 TNISSQFTSALERMDNISEGSGADDEEGAGLSDSDTPDLSDIFRVGQYVRAVVSAIHAPG 215

Query: 198 ------LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
                 L    D+     R++ LSL    +  G+    ++ G  +TA VKS+EDHGYIL 
Sbjct: 216 SSEASSLGKSRDETSKASRRVELSLVPERVNAGVQKADLKNGFTMTAAVKSVEDHGYILD 275

Query: 252 FGLPSFTGFLPRNN--LAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 309
            G+    GFL   +  +  +  I +  G LL   V  +    +   +++D    S     
Sbjct: 276 LGISGVEGFLAFKDTKMRPSGSIALDVGRLLDVSVTKLSANGRTCNVTTDQALFSSSYVT 335

Query: 310 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
           ++   S+  ++PG +V + + +I   G+ L  L +F GTVD  HL+           Y  
Sbjct: 336 EMS--SVTSVLPGALVQSLITAIHPTGLNLQVLGFFEGTVDPVHLKKG------GKAYQV 387

Query: 370 HKKVNARILFVDPTSRA-VGLTLNPYLLHNRAP-------PSHVK-------VGDIYDQS 414
            KKV ARIL+   +S     L L  +L +  AP       P+  K       +G I + +
Sbjct: 388 GKKVRARILYEYSSSPPRFALALVDHLTNLSAPCIKSKELPAETKSIQEAFPLGTIIESA 447

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--YKEGSCVRVRILGFRH 472
           KV+RV+   G+++++         +V IS ++E+ V  L     +K G+  R R+ G+  
Sbjct: 448 KVLRVETERGIIVEVQP---GVEGFVHISHLSEDHVPSLSSTGPWKPGTLHRARVTGYFS 504

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
            +GL     K S  E      SDV+ G V+KG +  +   G  V     +  +    H +
Sbjct: 505 FDGLLQLSFKPSIIEQKFLQVSDVEVGEVIKGTIKKLTDSGLFVSLSRSIDGVVWPNHYA 564

Query: 533 EFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
           +  +  P K+FK GA +  +VL V    KRI++T KKTL+ S L ILS   +A    +TH
Sbjct: 565 DITLKHPEKRFKPGAGIKCKVLAVDVYRKRISLTAKKTLLDSNLPILSKIDDAKPGFVTH 624

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
             I K+  +   V FYN ++   P  E+   P  + S  + +G+VV+ RI+S      RI
Sbjct: 625 AVIFKVYGNHLLVEFYNNLKAIVPAKEISDIPINKLSDSFPIGRVVRTRIISVDTEQGRI 684

Query: 651 NLSF---MMKPTRVSEDDLVKLGSLVSG-VVDVVTPNAVVV 687
             S    +     VS+   V++G++V G + ++   NA+++
Sbjct: 685 VASIRQALGNKDPVSDISAVEIGNIVKGSISEIHKDNALII 725


>gi|452821025|gb|EME28060.1| rRNA biogenesis protein rrp5 [Galdieria sulphuraria]
          Length = 1832

 Score =  341 bits (875), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 280/987 (28%), Positives = 509/987 (51%), Gaps = 124/987 (12%)

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS- 1032
            +  IV ++KE YL++ +P+ N+ + Y +  D   +           SVI +V ++   + 
Sbjct: 933  LRGIVLLIKEEYLIMRIPQLNNCLVYLTSWDPRVRA--------NLSVIYSVDSVIEGTV 984

Query: 1033 --TAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRL---KFGIGF 1087
               + RL +L+   +  E     + +   +  VG  V   I  I  + L L   ++ +  
Sbjct: 985  YYCSERLTMLVAMDANDE-----KKRMIENVQVGDHVIGRIVRISTVHLHLFIPRYSV-- 1037

Query: 1088 HGRIHITEVNDD--KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
            +GRIH +++  +  K  ++  L  +F+IGQ V A+IIAK +    KK  + +L++  + +
Sbjct: 1038 YGRIHCSQIMSEPGKDTLISPL-EHFEIGQQVEAKIIAKDHS---KKYQILDLTLNKNDV 1093

Query: 1146 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPS 1201
               E   K L +  ++S  Q +TG+V+K+  +  L++ S      +K   F  +     S
Sbjct: 1094 VTME---KNLVDWSNLSCRQCLTGFVHKIMTDKVLISFSSKVIGVMKRWGFTQNEQLLSS 1150

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1261
              ++       G+ +   ++ +N+ +KLL + L                  +   +H GD
Sbjct: 1151 --KQIFSSLRTGQPLHCTIIRLNQSRKLLEVAL----------------SELVKPVHVGD 1192

Query: 1262 IVGGRISKILSG------VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
             V   + ++L G      +   V        G + FT++ +         +D     K  
Sbjct: 1193 SVVAHVGQVLYGAEFCLELPKWVEWSLSTCRGVLSFTDIDD--------NFDRAT-AKIS 1243

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK-HLEKIEDLSPNMIVQGY 1374
             ++  + ++G      S++     + S  +SD      TP     + + DL    +V+G+
Sbjct: 1244 HIKSRKWIKGIIIECSSVKEKPIAIVSLRNSDAHPTQSTPKDIRWKNLMDLKAGQLVRGF 1303

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            +++ + KGCF+ LS  +  +V+L NLSDG+V++ E+ FP+G+LV  +V+ ++  + +VE+
Sbjct: 1304 IRHHSLKGCFVQLSSSIIGRVMLRNLSDGFVQNVEETFPLGQLVTAKVIDIQ--NGQVEL 1361

Query: 1435 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
            +L+ SD   + +  I   S L  G  + G +K ++ +G+F+++    + GLCH+S L + 
Sbjct: 1362 SLRESD--LSDRQTI--YSVLQKGLRLQGTVKNIQPFGIFVSL-GLGVTGLCHLSTLEK- 1415

Query: 1495 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEV 1554
                 ++ YR GE + V++  VD+EK RI+L        +  D ++ +    +   +  +
Sbjct: 1416 -----QSQYRIGEVIWVQVDNVDREKGRINL--------HPLDPIKENGRIGTLRQLVGI 1462

Query: 1555 GSYNRSSLLENSSVAVQDMDM---------ESEDGGS--LVLAQIESRASVPPLEVNLDD 1603
             S +++S L++S +    +D          ESE  GS   VL   ES          L D
Sbjct: 1463 DSTSQNSSLQHSYIDSVSVDANRDVVESSDESEGNGSDCEVLQVSES--------FQLQD 1514

Query: 1604 EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDE 1663
            E   ++N  SQN+ + +    +  ++    +  E+ ER  +     ER L++  P+  ++
Sbjct: 1515 EIL-LENDDSQNRANKNNVAKMVVESTEQQQDDERLERYSDEEIELERSLKE--PQNEED 1571

Query: 1664 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1723
            FER V +SP+ S +WI+YMA+ +SM  ++KA+  A RAL+ I++R ++EKLNIW+AY NL
Sbjct: 1572 FERHVLASPDDSSIWIRYMAYFISMGQIQKAKETARRALEKISVRNQDEKLNIWIAYLNL 1631

Query: 1724 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1783
            E +YG+  E  +  + + A    + +K+ L      ++T + K ++E+  +  ++FKHS 
Sbjct: 1632 EAQYGD--ESHLASILEEACSRTNAEKLLLNFAKSMQKTRKEK-SEEIYLRACRQFKHSP 1688

Query: 1784 KVWLRRVQRLLKQQQEGV---QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
            +VW+ +V     ++++ +   + +++RALLSLP+  HI+ I++  +LE+K G  +R R++
Sbjct: 1689 EVWM-QVGTFYYEKKKNISEGRKILERALLSLPKQDHIQVITKFTVLEYKFGSIERARTI 1747

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDV----DLIRGLFERAISLSLPPKKMKFLFKKYL 1896
            FE ++S +PKR D+W++YLD E +  D     + +R LFERA SLSL  KKMKFLFKKYL
Sbjct: 1748 FENMISSFPKRLDIWNVYLDMEWKQVDTEEDKERLRLLFERACSLSLSSKKMKFLFKKYL 1807

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVESTL 1923
            E+EK++G     E VK  A EYVE  L
Sbjct: 1808 EFEKTIGGNP--ERVKTLAREYVEKQL 1832



 Score = 94.4 bits (233), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 146/581 (25%), Positives = 250/581 (43%), Gaps = 91/581 (15%)

Query: 232 EGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 289
           +G ++   +   E++GY + FGL S  + GFLP   L E     +K G L+  +V     
Sbjct: 201 KGCLVYGMIYEREEYGYRVTFGLESIQYDGFLP---LEETESQILKSGSLIXQLVCD--- 254

Query: 290 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 349
             K+ Y S  P     CV   L+       + G ++  + +    +  + S +T F  ++
Sbjct: 255 -SKISYQSKWP---FGCVFPGLR-------MEGQVLQKKWKGSWTHIKLASNMTGFVYSM 303

Query: 350 DIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP---PSHVK 406
           +   ++ +F              ++ R++FVD   R + L+    L+    P   P+  K
Sbjct: 304 ET--IRESF--------------LDLRVIFVDVGKRVIYLSSVESLVGFLEPAKLPNAWK 347

Query: 407 VGDIYDQSKVVRVDRGL----GLLL------DIPSTPVSTPAYVTIS-DVAEEEVRKLEK 455
           +G+I    K V V+  L    G+LL       I   P S  A   IS D A   +  L+ 
Sbjct: 348 LGNIL---KNVIVEGHLSSPKGILLRHSESNTILFAPNSQLADSDISADAALSSLPSLQ- 403

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
                S V  RI+ F  L+G     +K S     + +  ++ PGM V+ K+ +V   G +
Sbjct: 404 -----SIVCCRIVAFSPLDGTIIVSMKPSILSKTIVSFDELHPGMPVQCKIESVRENGCL 458

Query: 516 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 573
                 ++A  P  H  +    +   KF  G ++   VL +   S R T+T KK  + ++
Sbjct: 459 CIVEDKIRAWIPQMHFGDTVGARLKNKFVAGKKVKGCVLSIFQDSHRCTITTKKKFIDNQ 518

Query: 574 LAILSSYAEATDRLITHGWITKIE---KHGCFVRFYNGVQGFAPRSELGLD--PGCEP-S 627
             +++S  +A   + +  +    +     G  V F+ GV+GF P S +GL+  P  E  S
Sbjct: 519 YPVIASIQDAKSNIGSAAYCCVYQVSSSRGLQVEFFQGVKGFLPVSYMGLEKLPSLEWLS 578

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD---LVKLGSLVSGVVDVVTPNA 684
             Y VG+ +K  I+S    S RI +S  +    +  DD   +V  G+    +V +   N 
Sbjct: 579 ENYPVGKTLKVWILSVHEESHRIIVS--LSRDVIMNDDSSAIVTYGA----IVGIEYGNL 632

Query: 685 VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-------FDQLLVLDNE-SSN 736
           +V   +     +  +P EHL+D    +  + S++   +E        +Q+++L +  SSN
Sbjct: 633 IVEVCLLDSRKRALLPKEHLSDFAYLSERIYSLLVSYFESNSSSLPLEQVVILRSRISSN 692

Query: 737 ---LLLSAKYSLINSAQQLPS-----DASHIHPNSVVHGYV 769
               L+S K SLI  A   PS       S    N ++ G+V
Sbjct: 693 DCRALVSLKRSLIQFALTYPSLSSDRICSEWKANQMLPGFV 733



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 155/363 (42%), Gaps = 36/363 (9%)

Query: 515  IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL 574
            I+  PG    + PL H   FEI +     +V A+++ +    K + + +T  K  V +  
Sbjct: 1046 IMSEPGKDTLISPLEH---FEIGQ-----QVEAKIIAKDHSKKYQILDLTLNKNDVVTME 1097

Query: 575  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS----SMY 630
              L  ++  + R    G++ KI      + F + V G   R     +     S    S  
Sbjct: 1098 KNLVDWSNLSCRQCLTGFVHKIMTDKVLISFSSKVIGVMKRWGFTQNEQLLSSKQIFSSL 1157

Query: 631  HVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 687
              GQ + C I+  +  SR+   + LS ++KP  V +  +  +G ++ G    +     V 
Sbjct: 1158 RTGQPLHCTIIR-LNQSRKLLEVALSELVKPVHVGDSVVAHVGQVLYGAEFCLELPKWVE 1216

Query: 688  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL------LLSA 741
            + ++    +G +    + D+ + AT   S IK       +++   E S++      ++S 
Sbjct: 1217 WSLST--CRGVLSFTDIDDNFDRATAKISHIKSRKWIKGIII---ECSSVKEKPIAIVSL 1271

Query: 742  KYSLINSAQQLPSDASH-----IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            + S  +  Q  P D        +    +V G++ +    GCFV+    + G        D
Sbjct: 1272 RNSDAHPTQSTPKDIRWKNLMDLKAGQLVRGFIRHHSLKGCFVQLSSSIIGRVMLRNLSD 1331

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--STDASFMQEHFLLEEKIA 854
            G   ++ +T+ +GQ V + ++D+  + G++ LSL++S  S   T  S +Q+   L+  + 
Sbjct: 1332 GFVQNVEETFPLGQLVTAKVIDI--QNGQVELSLRESDLSDRQTIYSVLQKGLRLQGTVK 1389

Query: 855  MLQ 857
             +Q
Sbjct: 1390 NIQ 1392



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 16/254 (6%)

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            K +   ++L P M VQ  +++V   GC  ++  K+ A +   +  D      + +F  GK
Sbjct: 431  KTIVSFDELHPGMPVQCKIESVRENGCLCIVEDKIRAWIPQMHFGDTVGARLKNKFVAGK 490

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVGDIVIGQIKRV-ESYGL 1473
             V G VLS+   S R  +T K    D++    + I +  + ++G      + +V  S GL
Sbjct: 491  KVKGCVLSIFQDSHRCTITTKKKFIDNQYPVIASIQDAKS-NIGSAAYCCVYQVSSSRGL 549

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             +      + G   VS +  + + ++E +   Y  G+ +KV IL V +E  RI + +   
Sbjct: 550  QVEFFQ-GVKGFLPVSYMGLEKLPSLEWLSENYPVGKTLKVWILSVHEESHRIIVSLSRD 608

Query: 1531 YFKNDADNLQMSSEE----ESDEAIEEVGSYN--RSSLLENSSVAVQDMDMESEDGGSLV 1584
               ND  +  ++       E    I EV   +  + +LL    ++  D    SE   SL+
Sbjct: 609  VIMNDDSSAIVTYGAIVGIEYGNLIVEVCLLDSRKRALLPKEHLS--DFAYLSERIYSLL 666

Query: 1585 LAQIESRASVPPLE 1598
            ++  ES +S  PLE
Sbjct: 667  VSYFESNSSSLPLE 680



 Score = 41.2 bits (95), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 103/244 (42%), Gaps = 20/244 (8%)

Query: 612 FAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---- 664
           FAP S+L    +      SS+  +  +V CRI++  P    I +S  MKP+ +S+     
Sbjct: 379 FAPNSQLADSDISADAALSSLPSLQSIVCCRIVAFSPLDGTIIVS--MKPSILSKTIVSF 436

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
           D +  G  V   ++ V  N  +  V  K   +  IP  H  D +     +K+    G + 
Sbjct: 437 DELHPGMPVQCKIESVRENGCLCIVEDK--IRAWIPQMHFGDTV--GARLKNKFVAGKKV 492

Query: 725 DQ-LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET---GCFVR 780
              +L +  +S    ++ K   I++   + +       N     Y C    +   G  V 
Sbjct: 493 KGCVLSIFQDSHRCTITTKKKFIDNQYPVIASIQDAKSNIGSAAYCCVYQVSSSRGLQVE 552

Query: 781 FLGRLTGFAPRSKAVDGQRADL---SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           F   + GF P S     +   L   S+ Y VG++++  IL V+ E+ RI +SL +    +
Sbjct: 553 FFQGVKGFLPVSYMGLEKLPSLEWLSENYPVGKTLKVWILSVHEESHRIIVSLSRDVIMN 612

Query: 838 TDAS 841
            D+S
Sbjct: 613 DDSS 616


>gi|149040333|gb|EDL94371.1| programmed cell death protein 11 (predicted) [Rattus norvegicus]
          Length = 964

 Score =  341 bits (874), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 294/1015 (28%), Positives = 477/1015 (46%), Gaps = 113/1015 (11%)

Query: 54   FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNK--------KKKKKTERKANET 103
            FPRGG     + E+  +   E D  F+ + E G  K+ K        KK K  +RK+N++
Sbjct: 8    FPRGGTRKPHKSEKSSQPVVEQDNLFDISTEEGSVKRKKSQKGPAKTKKLKIEKRKSNKS 67

Query: 104  VDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA 163
            + +   +               ++L+++  GM++ G V EVNE +LV+ LP GL+G  + 
Sbjct: 68   MKEKFEI---------------LSLESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQV 112

Query: 164  ADALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSL 216
             +  D      NE  A E+ L     LP +F  G LV C+V  LD    E GK+ + LS+
Sbjct: 113  TEICDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSV 170

Query: 217  RLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSG 271
                + K LS E ++ GM+LT  V S+EDHGY++  G+     FL      E     N G
Sbjct: 171  NPKRVNKVLSAEALRPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLSLQKAQEYIRQKNKG 230

Query: 272  IDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS 331
               K G  L  VV  +     VV LS +   VS     + +  +++ L+PG++V  +VQ 
Sbjct: 231  AKFKVGQYLTCVVEELKSNGGVVSLSVEHSQVSSAFATEEQSWNLNNLLPGLVVRAQVQK 290

Query: 332  ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL 391
            + + G+ L+FLT+FTG VD  HL+           Y+  + V A IL V P +R V L+L
Sbjct: 291  VTQFGLQLNFLTFFTGLVDFMHLE-----PKKMGSYSSKQTVKACILCVHPRTRVVRLSL 345

Query: 392  NPYLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 448
             P  LH   P + +   ++G + D + V       G +  +    +   AY  +S +++ 
Sbjct: 346  RPIFLHPGRPLTRISYQQLGTVLDDASVEGFFEKAGAIFRLRDGVL---AYARLSHLSDS 402

Query: 449  EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
            +     + +K GS  R RI+ +  ++ LA   L+ S        + D+K G +VKGKV+A
Sbjct: 403  KKAFSAEAFKLGSTHRCRIIDYSQMDELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLA 462

Query: 509  VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
            +  FG +V+    ++ L P  H+++  +  P KKF  G E+  RVL    ++K++ +T K
Sbjct: 463  LKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCRVLLCDPEAKKLIMTLK 522

Query: 567  KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
            KTLV SKL  ++ Y +A   L THG I +++ +GC V+FYN VQG  P+ EL      +P
Sbjct: 523  KTLVTSKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDP 582

Query: 627  SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----------LGSLVSGV 676
              +++ GQVVK  +++  P+  R+ LSF +      +D+ VK           G LV   
Sbjct: 583  ERVFYTGQVVKVAVLNCEPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVK 642

Query: 677  VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN 736
            V   T N + V ++        +PT HL+DH+ +                          
Sbjct: 643  VLEKTKNGLEVAILPHNIP-AFLPTPHLSDHVANGP------------------------ 677

Query: 737  LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
             LL      +   Q  P   S I P  ++ G+V +I + G FV+F   L+G +P++   D
Sbjct: 678  -LLHHWLQTVEGGQD-PKSLSEIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSD 735

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKI 853
                  S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE  
Sbjct: 736  KFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQ 795

Query: 854  AMLQ-SSKHNGSELKWVEGFIIGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAG 911
             +    S  +   ++ +     G V++  V E  + G VV       D+    + +  AG
Sbjct: 796  GIRSLMSNQDSVLIQTLADMTPGMVLDAMVQEVLENGSVVFGGGPVPDLILRASRYHRAG 855

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              +E G   +  +L V   +  V +SL    ++R           K ++ R+ S+    H
Sbjct: 856  QELEPGQKKKVVVLHVDALKLEVHVSLHQDLVNR-----------KARKLRKNSR----H 900

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATV 1025
            Q    IV+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+
Sbjct: 901  Q---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTL 952



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 145/336 (43%), Gaps = 44/336 (13%)

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
            EP ++  +  +    + V   +L ++   +++RL LRP           IS   + T + 
Sbjct: 314  EPKKMGSYSSK----QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTVLD 369

Query: 1259 EGDIVG-----GRISKILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFV 1312
            +  + G     G I ++  GV           Y R+ H ++ K    ++    +  G   
Sbjct: 370  DASVEGFFEKAGAIFRLRDGVLA---------YARLSHLSDSKKAFSAE---AFKLGSTH 417

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            +C++++ S+         LSLR S+              +  P     + +D+    IV+
Sbjct: 418  RCRIIDYSQMDELAL---LSLRKSI--------------IAAP---FLRYQDIKTGTIVK 457

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G  + +  ++   V   +L+D  +++PEK+F  G  V  RVL  +P +K++
Sbjct: 458  GKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCRVLLCDPEAKKL 517

Query: 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
             +TLK +   T+    I    +   G    G I RV+ YG  +   N ++ GL    ELS
Sbjct: 518  IMTLKKT-LVTSKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYN-DVQGLVPKHELS 575

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
              H+ + E ++  G+ VKV +L  +  K R+ L  K
Sbjct: 576  AQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK 611



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            I  G IV G++  +     G++V++G  + G V    L +I + +P   ++ G  VKC+V
Sbjct: 450  IKTGTIVKGKVLALKPF--GMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTGDEVKCRV 507

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L      +      ++L+ +L              V +    +   ED  P +   G + 
Sbjct: 508  LLCDPEAKKLI---MTLKKTL--------------VTSKLPAITCYEDAKPGLQTHGVII 550

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             V   GC +     +   V    LS  ++  PE+ F  G++V   VL+ EP  +R+ ++ 
Sbjct: 551  RVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSF 610

Query: 1437 KTSDSRTASQSEINNL----SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            K           + N     S ++ G +V  ++      GL + I   N+        LS
Sbjct: 611  KLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHNIPAFLPTPHLS 670

Query: 1493 EDHVDN 1498
             DHV N
Sbjct: 671  -DHVAN 675



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 133/669 (19%), Positives = 254/669 (37%), Gaps = 124/669 (18%)

Query: 794  AVDGQRADLS--------------KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             VDG RA LS                + VGQ +   + ++ S  G ++LS++ S  SS  
Sbjct: 207  GVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGVVSLSVEHSQVSSAF 266

Query: 840  ASFMQEHFLLEEKIAMLQSSKHNGSELKW-VEGFIIGSVIEGKVHESNDFGVVVSFEEH- 897
            A+                       E  W +   + G V+  +V +   FG+ ++F    
Sbjct: 267  AT----------------------EEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFLTFF 304

Query: 898  SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
            + +  F+        +  S   ++A IL V    R+V LSL+ +F+   R        Q 
Sbjct: 305  TGLVDFMHLEPKKMGSYSSKQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQL 364

Query: 958  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQK--FPQKQF 1015
                 +AS + G  +   AI  +             +  + YA +S  +  K  F  + F
Sbjct: 365  GTVLDDASVE-GFFEKAGAIFRL------------RDGVLAYARLSHLSDSKKAFSAEAF 411

Query: 1016 LNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 1075
              G +    ++   S      LL L K+I        +  K       G++V+ ++  +K
Sbjct: 412  KLGSTHRCRIIDY-SQMDELALLSLRKSIIAAPFLRYQDIK------TGTIVKGKVLALK 464

Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
            P  + +K G    G +    + D    +++N    F  G  V  R++     P+ KK  +
Sbjct: 465  PFGMLVKVGEQMRGLVPSMHLADI---MMKNPEKKFNTGDEVKCRVLL--CDPEAKKLIM 519

Query: 1136 WELSIKPSMLTVSEIGSKLLFEEC--DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
               ++K +++T     SKL    C  D   G +  G + +V +   L+     ++    +
Sbjct: 520  ---TLKKTLVT-----SKLPAITCYEDAKPGLQTHGVIIRVKDYGCLVKFYNDVQG--LV 569

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
                     + + +R F+ G+ V   VL+    K+ + L  +    G   K   + N   
Sbjct: 570  PKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK-LLSGSEPKDESVKNSKK 628

Query: 1254 Q-TFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELKNICVSDPLSGYDEGQF 1311
            + + ++ G +V  ++  +     GL V I PH +   +    L +   + PL  +     
Sbjct: 629  KGSTVNTGQLVDVKV--LEKTKNGLEVAILPHNIPAFLPTPHLSDHVANGPLLHH----- 681

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
                     +TV G                              G+  + + ++ P M++
Sbjct: 682  -------WLQTVEG------------------------------GQDPKSLSEIQPGMLL 704

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G+VK++   G F+     L      + +SD +V +P + F  G+ V  +V +V+   +R
Sbjct: 705  IGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQR 764

Query: 1432 VEVTLKTSD 1440
            + ++L+ SD
Sbjct: 765  MLLSLRLSD 773


>gi|302698227|ref|XP_003038792.1| hypothetical protein SCHCODRAFT_64843 [Schizophyllum commune H4-8]
 gi|300112489|gb|EFJ03890.1| hypothetical protein SCHCODRAFT_64843 [Schizophyllum commune H4-8]
          Length = 1461

 Score =  340 bits (873), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 231/686 (33%), Positives = 371/686 (54%), Gaps = 50/686 (7%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK---NICVSDPLSGYDEGQFVKCKV 1316
            G +V GR+++ +    G +V++   + G +H +++    N     PL   D    VK  +
Sbjct: 796  GQVVTGRVTRHVQK--GALVKVTAKVRGILHPSDVADDFNHVKGQPLPAVD--AVVKAAI 851

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP--GKHLEKIEDLSPNMIVQGY 1374
            + I R  +     +L L        ST  S +S   D     K + +I DL     V+G+
Sbjct: 852  VGIDRENK-----QLIL--------STRPSRVSPQPDRSVRDKEIGEISDLHVGQTVRGF 898

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            +K+V   G F+ + R LDA+V +  L D YV+  +  F + ++V GR+L V+  SK++E+
Sbjct: 899  IKSVADHGLFVTVGRGLDARVQIKELFDDYVKEWKPRFKVNQVVEGRILQVDAESKKIEM 958

Query: 1435 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
            T +   S  A +S    +++L  G +V G + R+E YGL I I+ + L GLC  +E +++
Sbjct: 959  TFR---SEEALKSSTLTIADLKEGQVVDGTVNRIEPYGLLIQIQRSKLKGLCRKTEFTDN 1015

Query: 1495 HVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA- 1550
               +++     +RAG+KVK  ILK+    RRI+L +K S    DA  ++    E+ DE  
Sbjct: 1016 KDADVDAALEGFRAGDKVKACILKL--ADRRIALSLKPSRL-GDAGFVEDEEAEDDDEEE 1072

Query: 1551 ----IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVP------PLEVN 1600
                I +V +       E      Q +D ESEDG +    + +  A         P EV 
Sbjct: 1073 QEGIIRDVDAETSDEEDEEMPGQEQAVDDESEDGDAPEHDEDDDDADEDAIMIDIPAEVT 1132

Query: 1601 LDDEQP-DMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD--- 1656
                Q  ++  G   N G  +     +  +   ++ ++ E +++  R   E+ L  D   
Sbjct: 1133 PAQSQSLELLGGFQWNTGAAEPESDAESSDGSDSETEQPERKKRNKRKEIEKDLTADMHT 1192

Query: 1657 -APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1715
             AP +  +FERL+  SPNSS++WI+YM+F L + +++KAR++A RAL TIN REENEKLN
Sbjct: 1193 KAPESTADFERLLLGSPNSSYLWIQYMSFQLQLGEMDKARALARRALSTINFREENEKLN 1252

Query: 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1775
            +W+A  NLEN YG   ++++   F+ A +  D K VHL L  ++E++ +    +E   K 
Sbjct: 1253 VWIALLNLENAYGT--DDSLDATFKEAARANDSKTVHLRLAAIFEQSGKIDKTEEQFKKT 1310

Query: 1776 IKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
             KKF HS KVW    +  L++ + E  + ++ RAL SL + KHIK IS+ A LE+K    
Sbjct: 1311 AKKFGHSSKVWTLYGEFFLRRGEVEEARKLLPRALQSLEKRKHIKTISKFAQLEYKMADP 1370

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
            +RGR++FEGI+S +PKR D+WSIY+D E    ++  +R LF R +++ +   K K  FKK
Sbjct: 1371 ERGRTLFEGIVSIHPKRWDIWSIYMDMEATQSNIQSLRNLFNRVLAIKMTSHKAKSFFKK 1430

Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYVE 1920
            +L+ E  +G+EE  E VK KA+E+ +
Sbjct: 1431 WLDLEHRLGDEEGAEQVKAKAIEWTQ 1456



 Score =  229 bits (584), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 220/857 (25%), Positives = 375/857 (43%), Gaps = 106/857 (12%)

Query: 54  FPRGGGHSLTQRERDEIHAEV-----DAEFEAVERGLHKKNKKKKKKTERKANETVDDLG 108
           FPRGGG S T  E   I AE      DA F   ++   K+ +K+ +  + KA++      
Sbjct: 47  FPRGGGSSFTPLEVKAIRAEAVKEANDALFNEGQQESKKRKRKQSESKKPKADKAEK--- 103

Query: 109 SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG--------- 159
                  SGK+      +  K +  G K+ G +  V    L++ LP  L G         
Sbjct: 104 -------SGKI--RIEHLNYKRMIPGQKILGQIISVQPLALIVSLPNQLLGHVPITNIST 154

Query: 160 -LARAADALDPILDNEIEANEDNLLPT---IFHVGQLVSCIVLQL----DDDKKEIGK-- 209
            L  A DA+D    ++ +A     +P    IFH GQ V  +V  +      D   IG+  
Sbjct: 155 QLTAALDAMDVDESDDEDAPAQTAVPDLDDIFHPGQYVRAVVATVHAPGTTDLSGIGRSR 214

Query: 210 -------RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP 262
                  R++ LSL    +  G+    ++EG  LTA V+S+EDHGYI+  G+P  +GFL 
Sbjct: 215 DEVVRASRRVELSLVPGKVNAGVQKGDLKEGFTLTAAVQSVEDHGYIVDLGIPDVSGFLS 274

Query: 263 RNNLAENSGID----VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDL 318
             +    S  D    +  G L+   V  + +  +   +++DP   +     ++  ++   
Sbjct: 275 FKDAPTTSTDDEDAKLPVGSLVNATVLKLSKNGRTCNVTADPAKFTSSFATEVTNVAA-- 332

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
           ++PG +V + + +    G+ L  + +F GT+D  HL+         ND+N  KK+ AR+L
Sbjct: 333 VLPGTLVQSLITAASPTGLNLQVIGFFDGTIDEVHLRQ-----GSSNDWNVGKKIKARVL 387

Query: 379 F-VDPTSRAVGLTLNPYLL-----------------HNRAPPSHVKVGDIYDQSKVVRVD 420
           +    +   + L LN +++                   R P     +G   + +K+VRV+
Sbjct: 388 YNYSDSPPKLALALNEHIIALDSRKIKNPDNTMTDFRERYP-----IGRTVENAKIVRVE 442

Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--YKEGSCVRVRILGFRHLEGLAT 478
              GL++ +         +V IS  ++E V  L     +K GS  R R+ G+  L+GL  
Sbjct: 443 PERGLIVQLEP---GVEGFVHISHTSDEHVPSLSAAGAHKIGSTHRARVTGYFPLDGLLQ 499

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
             +K S  E      SDV+PG +VKG +  +      V   G +  +    H ++  + +
Sbjct: 500 LSMKPSILEQKYLQVSDVQPGQIVKGTIKKLTDSALFVSLSGNMDGVVWPNHYADIALKQ 559

Query: 539 PGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           PGK+FK GA +  RVL V    KRI++T KKTL+ S L +L+ Y +A   ++TH  + K+
Sbjct: 560 PGKRFKAGASIKCRVLVVDEGRKRISLTAKKTLIDSTLPVLARYEDAQVGMVTHAVVFKV 619

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
                 V FYN ++   P  +    P    +  + VG+ VK R+ S  P  RRI  S   
Sbjct: 620 FDKHLMVEFYNNLKAIVPAKDAVESPDQRLADSFPVGKPVKVRLTSLEPEQRRIVASIRQ 679

Query: 657 -----KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE-- 709
                +P  ++    V++G ++ G V  V     ++ +   G  +  +   ++A  L   
Sbjct: 680 AAGASQPVPLT---AVEIGDILPGKVTEVHKEHALLTLQPSGV-RALVSLANVA-MLRGV 734

Query: 710 HATVMKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQQLPSDA-------SHIH 760
            A  +++ ++PG     L+V++   E   +++S K S   + +   + A           
Sbjct: 735 SAAQVRTALQPGEVLPDLVVVERSPEKGFVIVSGKPSKPKATKGADASAKPAAITLDTAE 794

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTG-FAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
              VV G V   ++ G  V+   ++ G   P   A D           V   V++ I+ +
Sbjct: 795 VGQVVTGRVTRHVQKGALVKVTAKVRGILHPSDVADDFNHVKGQPLPAVDAVVKAAIVGI 854

Query: 820 NSETGRITLSLKQSCCS 836
           + E  ++ LS + S  S
Sbjct: 855 DRENKQLILSTRPSRVS 871



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 26/266 (9%)

Query: 586 RLITHGWITKIE-KHGCFVRFYNGVQGFAPRSELGLD--PGCEPSSMYHVGQVVKCRIMS 642
           R + +  I ++E + G  V+   GV+GF   S    +  P    +  + +G   + R+  
Sbjct: 431 RTVENAKIVRVEPERGLIVQLEPGVEGFVHISHTSDEHVPSLSAAGAHKIGSTHRARVTG 490

Query: 643 SIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 698
             P    + LS  MKP+ + +  L    V+ G +V G +  +T +A+  +V   G   G 
Sbjct: 491 YFPLDGLLQLS--MKPSILEQKYLQVSDVQPGQIVKGTIKKLTDSAL--FVSLSGNMDGV 546

Query: 699 IPTEHLADHLEHATVMKSVIKPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQ 751
           +   H AD         ++ +PG  F        ++LV+D     + L+AK +LI+S   
Sbjct: 547 VWPNHYADI--------ALKQPGKRFKAGASIKCRVLVVDEGRKRISLTAKKTLIDSTLP 598

Query: 752 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 811
           + +         V H  V  + +    V F   L    P   AV+     L+ ++ VG+ 
Sbjct: 599 VLARYEDAQVGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKDAVESPDQRLADSFPVGKP 658

Query: 812 VRSNILDVNSETGRITLSLKQSCCSS 837
           V+  +  +  E  RI  S++Q+  +S
Sbjct: 659 VKVRLTSLEPEQRRIVASIRQAAGAS 684



 Score = 67.4 bits (163), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 123/557 (22%), Positives = 225/557 (40%), Gaps = 66/557 (11%)

Query: 967  DLGVHQTVNAIVEIVKEN-YLV-LSLPEYNHSIGY----ASVSDYNTQKFPQKQFLNGQS 1020
            DL    T+ A V+ V+++ Y+V L +P+ +  + +     + +D    K P    +N   
Sbjct: 241  DLKEGFTLTAAVQSVEDHGYIVDLGIPDVSGFLSFKDAPTTSTDDEDAKLPVGSLVN--- 297

Query: 1021 VIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELR 1080
              ATV+ L   S  GR   +    ++  +S +      ++   G+LVQ+ IT   P  L 
Sbjct: 298  --ATVLKL---SKNGRTCNVTADPAKFTSSFATEVTNVAAVLPGTLVQSLITAASPTGLN 352

Query: 1081 LKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK-SNKPDMKKSFLWELS 1139
            L+    F G I    +    SN       ++ +G+ + AR++   S+ P      L E  
Sbjct: 353  LQVIGFFDGTIDEVHLRQGSSN-------DWNVGKKIKARVLYNYSDSPPKLALALNEHI 405

Query: 1140 IKPSMLTVSEIGSKLLFEECDVSIGQRV-TGYVYKVDNEWALLT-ISRHLKAQLFILDSA 1197
            I      +    + +        IG+ V    + +V+ E  L+  +   ++  + I  ++
Sbjct: 406  IALDSRKIKNPDNTMTDFRERYPIGRTVENAKIVRVEPERGLIVQLEPGVEGFVHISHTS 465

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
             E            IG      V        LL+L ++P    +  K + +S+      +
Sbjct: 466  DEHVPSLSAAGAHKIGSTHRARVTGYFPLDGLLQLSMKP--SILEQKYLQVSD------V 517

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVL 1317
              G IV G I K+      L V +  ++ G V      +I +  P   +  G  +KC+VL
Sbjct: 518  QPGQIVKGTIKKLTDS--ALFVSLSGNMDGVVWPNHYADIALKQPGKRFKAGASIKCRVL 575

Query: 1318 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1377
             +     G   + L+ + +L              +D+    L + ED    M+    V  
Sbjct: 576  VVDE---GRKRISLTAKKTL--------------IDSTLPVLARYEDAQVGMVTHAVVFK 618

Query: 1378 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE----FPIGKLVAGRVLSVEPLSKRVE 1433
            V  K   +     L A V   +     VESP++     FP+GK V  R+ S+EP  +R+ 
Sbjct: 619  VFDKHLMVEFYNNLKAIVPAKD----AVESPDQRLADSFPVGKPVKVRLTSLEPEQRRIV 674

Query: 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN---LVGLCHVSE 1490
             +++    + A  S+   L+ + +GDI+ G++  V      +T++ +    LV L +V+ 
Sbjct: 675  ASIR----QAAGASQPVPLTAVEIGDILPGKVTEVHKEHALLTLQPSGVRALVSLANVAM 730

Query: 1491 LSEDHVDNIETIYRAGE 1507
            L       + T  + GE
Sbjct: 731  LRGVSAAQVRTALQPGE 747



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 132/290 (45%), Gaps = 33/290 (11%)

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            KA    + S+   A    + +VG +V   +T        +K      G +H ++V DD +
Sbjct: 774  KATKGADASAKPAAITLDTAEVGQVVTGRVTRHVQKGALVKVTAKVRGILHPSDVADDFN 833

Query: 1102 NVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVS---EIGSKLLF 1156
            +V         +   V A I+   + NK  +       LS +PS ++      +  K + 
Sbjct: 834  HVKGQPLP--AVDAVVKAAIVGIDRENKQLI-------LSTRPSRVSPQPDRSVRDKEIG 884

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI--LDSAYEPSELQEFQRRFHIGK 1214
            E  D+ +GQ V G++  V +    +T+ R L A++ I  L   Y    ++E++ RF + +
Sbjct: 885  EISDLHVGQTVRGFIKSVADHGLFVTVGRGLDARVQIKELFDDY----VKEWKPRFKVNQ 940

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
             V G +L ++ E K + +  R  ++ +   T+ I++      + EG +V G +++I    
Sbjct: 941  VVEGRILQVDAESKKIEMTFRS-EEALKSSTLTIAD------LKEGQVVDGTVNRIEP-- 991

Query: 1275 GGLVVQIG----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
             GL++QI       L  +  FT+ K+  V   L G+  G  VK  +L+++
Sbjct: 992  YGLLIQIQRSKLKGLCRKTEFTDNKDADVDAALEGFRAGDKVKACILKLA 1041



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 8/173 (4%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
            ++ D+ P  IV+G +K +T    F+ LS  +D  V  ++ +D  ++ P K F  G  +  
Sbjct: 513  QVSDVQPGQIVKGTIKKLTDSALFVSLSGNMDGVVWPNHYADIALKQPGKRFKAGASIKC 572

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITI 1477
            RVL V+   KR+ +T K    +T   S +  L+   +  VG +    + +V    L +  
Sbjct: 573  RVLVVDEGRKRISLTAK----KTLIDSTLPVLARYEDAQVGMVTHAVVFKVFDKHLMVEF 628

Query: 1478 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             N NL  +    +  E     +   +  G+ VKV++  ++ E+RRI   ++ +
Sbjct: 629  YN-NLKAIVPAKDAVESPDQRLADSFPVGKPVKVRLTSLEPEQRRIVASIRQA 680



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 139/653 (21%), Positives = 256/653 (39%), Gaps = 93/653 (14%)

Query: 334  ENGVMLSFLTYFTGTVDIFHLQNT-FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
            E G+++       G V I H  +   P+ +    +       AR+    P    + L++ 
Sbjct: 444  ERGLIVQLEPGVEGFVHISHTSDEHVPSLSAAGAHKIGSTHRARVTGYFPLDGLLQLSMK 503

Query: 393  PYLLHNR-APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
            P +L  +    S V+ G I   +     D  L + L      V  P +   +D+A   ++
Sbjct: 504  PSILEQKYLQVSDVQPGQIVKGTIKKLTDSALFVSLSGNMDGVVWPNH--YADIA---LK 558

Query: 452  KLEKKYKEGSCVRVRIL----GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
            +  K++K G+ ++ R+L    G + +   A   L  S    L   + D + GMV    V 
Sbjct: 559  QPGKRFKAGASIKCRVLVVDEGRKRISLTAKKTLIDSTLPVLA-RYEDAQVGMVTHAVVF 617

Query: 508  AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSKRITVTH 565
             V     +V+F   +KA+ P     E    +    F VG  +  R+  L  + +RI  + 
Sbjct: 618  KVFDKHLMVEFYNNLKAIVPAKDAVESPDQRLADSFPVGKPVKVRLTSLEPEQRRIVASI 677

Query: 566  KKTLVKSKLAILSSYAEATDRLITHGWITKIEK-HGCFVRFYNGVQGFAPRSELGLDPGC 624
            ++    S+   L++  E  D  I  G +T++ K H       +GV+     + + +  G 
Sbjct: 678  RQAAGASQPVPLTA-VEIGD--ILPGKVTEVHKEHALLTLQPSGVRALVSLANVAMLRGV 734

Query: 625  EPSSMYHVGQ--------VVKCR-------IMSSIPASRRIN--LSFMMKPTRVSEDDLV 667
              + +    Q        VV  R       I+S  P+  +         KP  ++ D   
Sbjct: 735  SAAQVRTALQPGEVLPDLVVVERSPEKGFVIVSGKPSKPKATKGADASAKPAAITLD-TA 793

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-----TVMKSVIKPGY 722
            ++G +V+G V        +V V AK   +G +    +AD   H        + +V+K   
Sbjct: 794  EVGQVVTGRVTRHVQKGALVKVTAK--VRGILHPSDVADDFNHVKGQPLPAVDAVVKAA- 850

Query: 723  EFDQLLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETG 776
                ++ +D E+  L+LS + S ++             + S +H    V G++ ++ + G
Sbjct: 851  ----IVGIDRENKQLILSTRPSRVSPQPDRSVRDKEIGEISDLHVGQTVRGFIKSVADHG 906

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
             FV     L       +  D    +    + V Q V   IL V++E+ +I ++       
Sbjct: 907  LFVTVGRGLDARVQIKELFDDYVKEWKPRFKVNQVVEGRILQVDAESKKIEMT------- 959

Query: 837  STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
                      F  EE    L+SS    ++LK       G V++G V+    +G+++   +
Sbjct: 960  ----------FRSEE---ALKSSTLTIADLKE------GQVVDGTVNRIEPYGLLIQI-Q 999

Query: 897  HSDVYGFITHHQLA-------GATVE---SGSVIQAAILDVAKAERLVDLSLK 939
             S + G     +          A +E   +G  ++A IL +  A+R + LSLK
Sbjct: 1000 RSKLKGLCRKTEFTDNKDADVDAALEGFRAGDKVKACILKL--ADRRIALSLK 1050



 Score = 48.1 bits (113), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 114/526 (21%), Positives = 204/526 (38%), Gaps = 73/526 (13%)

Query: 212 IWLSLRLSLL-YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-- 268
           + LS++ S+L  K L +  VQ G ++   +K + D    +     +  G +  N+ A+  
Sbjct: 498 LQLSMKPSILEQKYLQVSDVQPGQIVKGTIKKLTDSALFVSLS-GNMDGVVWPNHYADIA 556

Query: 269 --NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVP----- 321
               G   K G  ++  V  +D  RK + L++             K   ID  +P     
Sbjct: 557 LKQPGKRFKAGASIKCRVLVVDEGRKRISLTA-------------KKTLIDSTLPVLARY 603

Query: 322 -----GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
                GM+    V  + +  +M+ F       V       + P     + +   K V  R
Sbjct: 604 EDAQVGMVTHAVVFKVFDKHLMVEFYNNLKAIVPAKDAVES-PDQRLADSFPVGKPVKVR 662

Query: 377 ILFVDPTSRAVGLTLNPYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPS---T 432
           +  ++P  R +  ++      ++  P + V++GDI    KV  V +   LL   PS    
Sbjct: 663 LTSLEPEQRRIVASIRQAAGASQPVPLTAVEIGDIL-PGKVTEVHKEHALLTLQPSGVRA 721

Query: 433 PVSTPAYVTISDVAEEEVRK-------------LEKKYKEGSCVRVRILGFRHLEGLATG 479
            VS      +  V+  +VR              +E+  ++G      I+  +  +  AT 
Sbjct: 722 LVSLANVAMLRGVSAAQVRTALQPGEVLPDLVVVERSPEKGFV----IVSGKPSKPKATK 777

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA-LCPLPHMSEFEIVK 538
              ASA    + T    + G VV G+V      GA+V+    V+  L P     +F  VK
Sbjct: 778 GADASAKPAAI-TLDTAEVGQVVTGRVTRHVQKGALVKVTAKVRGILHPSDVADDFNHVK 836

Query: 539 ----PGKKFKVGAELVF-------RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
               P     V A +V         +L  +  R++    +++   ++  +S         
Sbjct: 837 GQPLPAVDAVVKAAIVGIDRENKQLILSTRPSRVSPQPDRSVRDKEIGEISDLHVGQ--- 893

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
              G+I  +  HG FV    G+       EL  D   E    + V QVV+ RI+     S
Sbjct: 894 TVRGFIKSVADHGLFVTVGRGLDARVQIKELFDDYVKEWKPRFKVNQVVEGRILQVDAES 953

Query: 648 RRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 689
           ++I ++F     +K + ++  DL K G +V G V+ + P  +++ +
Sbjct: 954 KKIEMTFRSEEALKSSTLTIADL-KEGQVVDGTVNRIEPYGLLIQI 998


>gi|336376655|gb|EGO04990.1| hypothetical protein SERLA73DRAFT_157761 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1437

 Score =  338 bits (867), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 270/909 (29%), Positives = 446/909 (49%), Gaps = 111/909 (12%)

Query: 1059 SSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
            SSYD   +G +  A +++I    ++++F       I + EV      V   L   F +G+
Sbjct: 586  SSYDDDNIGLVTDAAVSKILDKAIQVEFYNNVKAIIPLQEVG----QVTGKLADEFSVGK 641

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
             V  RII+   K     +     SI+   L V  + + +      V IG  V G V ++ 
Sbjct: 642  VVKVRIISIDAKNQRMVA-----SIRQVTLNVQSVAATI----TGVEIGSTVEGIVTEIH 692

Query: 1176 NEWALLTISRHLKAQLFILD--SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
                 L++       L  L   + +  +   + +    +G  V   V+     +K   LV
Sbjct: 693  TRNIALSLQPTQAPALISLRNLANHYGTTSAKLEMSLKVGDRVDRLVVVSRNLEKDFVLV 752

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
            +   +     K   +S D ++     G +VGGR+++      G  V+I   + G +H T+
Sbjct: 753  VGNLRGRAVIKKGAVSMDTIEI----GQVVGGRVTRHCHS--GAHVKISTRISGSLHPTD 806

Query: 1294 LKNICVSDPLSGYDEG-------QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1346
                 VSD    YD G         +K  V+ I ++     H  LS R S      T   
Sbjct: 807  -----VSD---NYDAGISFLPVDSILKAVVIGIDKS---NNHATLSTRPSRFLPVKTG-- 853

Query: 1347 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
             L TD     + ++   +L     V+G+VK+V+  G F+ML R +DA+V +  L + +V+
Sbjct: 854  -LVTD-----REIKAFAELKTGDTVRGFVKSVSEHGLFVMLGRGIDARVQIKELFNTFVK 907

Query: 1407 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
              +  F   ++V G +LSV+ L+K+VE+T ++ D  T   ++    ++LH G  V G++K
Sbjct: 908  DWKSRFTANQVVKGSILSVDVLTKKVEMTFRSRD-LTRDGTDSFTFADLHQGQKVTGRVK 966

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI----YRAGEKVKVKILKVDKEKRR 1522
            R+E YGLFI I+ + L GLCH SELS D+ D   T+    +R G+ VK  IL +D+E RR
Sbjct: 967  RIELYGLFIEIDGSTLSGLCHKSELS-DNKDADVTVSLGNFREGDPVKALILSIDQENRR 1025

Query: 1523 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV----AVQDMDM--- 1575
            IS G+K SYF  D        E + D  +++ G    S + +N  +     V D D    
Sbjct: 1026 ISFGLKPSYFVGD------DHEADMDIVLQDRGEGTMSVVCDNGELLAIREVVDSDHSSR 1079

Query: 1576 ------ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGH----------- 1618
                  E ++ G  +LA I    + P  ++            + QN  H           
Sbjct: 1080 KDVSSGEQQNDGEDMLADI----ATPLTQL--------YTASLLQNSAHLLNLEAFQWFD 1127

Query: 1619 ------TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSP 1672
                  +    + D    ++ K   K  ++ ++ A     +    P    +FE+L+  SP
Sbjct: 1128 LGTLSESSSKSSEDGDLGQNKKTFRKGVKDGDLTAD----IHFQPPEAIADFEKLLLGSP 1183

Query: 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1732
            NSSF+WI+Y++F L ++++++AR +  RA+QTIN REE EKLN+W+A  NLEN YG    
Sbjct: 1184 NSSFLWIRYISFQLQLSELDRARELGRRAIQTINFREEQEKLNVWIAMLNLENTYGT--N 1241

Query: 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792
            + +   F+ AL+Y D K +HL L  ++E++E+++ A+E   +  +KF HS KVW    + 
Sbjct: 1242 DTLETTFKDALRYNDAKTLHLRLAAIFEQSEKHEKAEEQYIRACRKFSHSSKVWTLFAEY 1301

Query: 1793 LLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851
             L+  + E  + ++  +L SL  +KH+K IS+ A +E+K G  +RG+++FEG +  +PKR
Sbjct: 1302 YLRCGKLEQARRLLSASLHSLEINKHLKTISRFAQMEYKLGDPERGKTIFEGAVDSHPKR 1361

Query: 1852 TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYV 1911
             DLWS+Y+D E     +  +R +F R  ++++     K+ FKK+L+ E+  G  E    V
Sbjct: 1362 WDLWSVYIDMEAGQCAMQNLRDIFNRVFAINMTGHNAKYFFKKWLDLEQKFGHGEGAIAV 1421

Query: 1912 KQKAMEYVE 1920
            K KAME+V+
Sbjct: 1422 KVKAMEWVQ 1430



 Score =  167 bits (423), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 206/836 (24%), Positives = 359/836 (42%), Gaps = 96/836 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAE-VD-AEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGGG S T  E   I AE VD A  + + +G   KN              VD +    
Sbjct: 50  FPRGGGTSFTPLEVKAIRAEGVDEANVKLISQGHILKNN-------------VDSI---- 92

Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL-------------- 157
                 K P     +  K I  GMK++G +  ++   L++ LP  +              
Sbjct: 93  ------KNPTLKECLNYKRIVPGMKIFGQIMFIHPLALIVSLPNRIVAHVPVTQVTSQLT 146

Query: 158 -RGLARAADALDPILDNEIEANEDNL-----LPTIFHVGQLVSCIVLQL----DDDKKEI 207
            R  +  A+ + P   + IE   ++      L  +F+ GQ V  IV+        D   +
Sbjct: 147 ERLESTPANTVQPGEYSHIENGWNSSFHIPELAHLFYPGQYVRAIVIATHAAGSADVCGL 206

Query: 208 GK---------RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 258
           GK         R+I LSL    +  G+    +  G  ++A ++S+EDHGYI   G+   +
Sbjct: 207 GKVRNDAIRASRRIELSLIPERVNAGVQKSDLTTGFTMSAALRSVEDHGYIFDLGISDTS 266

Query: 259 GFLPRNNL--AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI 316
           GFL   +   A  +      G L++  V  +    +   LS DP+ ++     ++  +S 
Sbjct: 267 GFLSFKDYRKAHVNTNHFVVGSLVEVCVTEMSTDGRNCTLSVDPELLASASLSEVTHVSS 326

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
             ++PG MV + + S    G+ L  L +F G V+ FHL    P    + +Y   +KV AR
Sbjct: 327 --ILPGSMVQSLIISAKPAGLNLKLLHFFNGVVNEFHL----PAGEME-EYKVGRKVKAR 379

Query: 377 ILFVDPTSR----AVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 432
           +L+   +S     AV L  +   L  +       +G + +  +V +++   GL++++   
Sbjct: 380 VLYSVHSSPYPTFAVSLADHIIGLKKKEEVESYPIGTVLEAVRVNKLEGEQGLIVEVQP- 438

Query: 433 PVSTPAYVTISDVAEEEVRKLEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
                 +V IS ++++ V  L     +K  +  R R+ G   L+G+    L+ S  E   
Sbjct: 439 --GVEGFVHISQISDDHVLSLSATGPWKLNTIHRGRVTGLHPLDGILQLSLRRSVLEQKF 496

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
               ++  G V++G +  +      +     V  +    H ++  I  P  +FK+G  + 
Sbjct: 497 LEAGEILVGEVLRGTIKQMTKSALFISISANVDGVVWPNHYADIAIKHPTLRFKLGVSIK 556

Query: 551 FRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            RVL + S  +RI +T KKTLV+S L ILSSY +    L+T   ++KI      V FYN 
Sbjct: 557 CRVLTIDSEQRRIVLTAKKTLVESTLPILSSYDDDNIGLVTDAAVSKILDKAIQVEFYNN 616

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS-------SIPASRRINLSFMMKPTRV 661
           V+   P  E+G   G + +  + VG+VVK RI+S        + + R++ L+       +
Sbjct: 617 VKAIIPLQEVGQVTG-KLADEFSVGKVVKVRIISIDAKNQRMVASIRQVTLNVQSVAATI 675

Query: 662 SEDDLVKLGSLVSGVV-DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIK 719
           +    V++GS V G+V ++ T N  +   +    +   I   +LA+H    +  ++  +K
Sbjct: 676 TG---VEIGSTVEGIVTEIHTRN--IALSLQPTQAPALISLRNLANHYGTTSAKLEMSLK 730

Query: 720 PGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
            G   D+L+V+    E   +L+          ++       I    VV G V     +G 
Sbjct: 731 VGDRVDRLVVVSRNLEKDFVLVVGNLRGRAVIKKGAVSMDTIEIGQVVGGRVTRHCHSGA 790

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            V+   R++G    +   D   A +S    V   +++ ++ ++      TLS + S
Sbjct: 791 HVKISTRISGSLHPTDVSDNYDAGIS-FLPVDSILKAVVIGIDKSNNHATLSTRPS 845


>gi|393244266|gb|EJD51778.1| nucleic acid-binding protein [Auricularia delicata TFB-10046 SS5]
          Length = 1472

 Score =  338 bits (866), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 281/995 (28%), Positives = 496/995 (49%), Gaps = 92/995 (9%)

Query: 967  DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
            D+ V + +   V+ + +N L +S+     ++ + +     T + P+K+F  G +V   V+
Sbjct: 530  DVTVGERMKGTVKRLADNALFVSVSGSVDAVVWPNHYADITLRHPEKRFKAGGTVKGRVL 589

Query: 1027 ALPSSSTAGRLLLLLK-AISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGI 1085
             +       RL L LK  + E++     + ++ +    G++  A + +     L ++F  
Sbjct: 590  VVDPERN--RLCLTLKKTLVESDLPIVSKIEEATP---GTITHAVVFKNLDKGLLVEFFN 644

Query: 1086 GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
                 +   E+ND      ++    F IG+ V  +I+              +++ + S +
Sbjct: 645  NLRAFVPQREMNDSAVQSADD----FPIGKVVRVKIL--------------DVNAETSKI 686

Query: 1146 TVSEIGSKLLFEEC----DVSIGQRVTGYVYKVDNEWALLT-ISRHLKAQLFILDSA-YE 1199
              S     L F+       V  G  V G V  +  E A+L+ +   ++A L   + A + 
Sbjct: 687  VASIRQGALNFQSAIDISGVDDGAVVHGTVAALHKEHAMLSLVPSKVRALLSFANLAKHR 746

Query: 1200 PSELQEFQRRFHIGKAVTG-HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF-- 1256
               L + +    +G+ +    V+  N EK     VL  ++D    + + +S ++      
Sbjct: 747  NLPLAQAKAALKVGEGLKELTVVGRNAEKGF---VLVGYKDEKRARRLSLSANSGLAIDK 803

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE----GQFV 1312
            +  G ++ G +  +  G  G VV+I   + G VH  +     V+D L    +    G   
Sbjct: 804  VTVGQVMPGLV--VSHGRKGAVVRISSKISGSVHALD-----VADELPPKAQLPPVGTMT 856

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            +  VL + +  +     +L+L S    +S  ++ ++        + +  + DL     ++
Sbjct: 857  QFAVLAVDKDRK-----QLTLSSRPSNVSPESAGEVKD------REINSLGDLKVGQRLR 905

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G++K+V   G F+ + R LDA+V +  L D +V+  + +F +   V G+++SV+    +V
Sbjct: 906  GFIKSVADHGLFVNIGRNLDARVQIKELFDDFVKDWKSKFNVDDRVHGQIISVDVEKNQV 965

Query: 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            E++L++ D R  +Q E   L++   G  V   +KR E+YG+F+ IE T + GLCH S +S
Sbjct: 966  EMSLRSGD-RKVAQVETKGLADFAKGQKVDAIVKRTETYGIFLQIEGTKISGLCHKSNIS 1024

Query: 1493 EDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ--------- 1540
            +    ++E     ++ G++VK  IL +D EKRRI  G+K S+F  DA++           
Sbjct: 1025 DTKDADVERAIKNFKEGDRVKAMILSIDLEKRRIDFGLKPSFF--DAEDFAPPASDDEDE 1082

Query: 1541 -----MSSEEESDEAI-----EEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIES 1590
                 +S   + DEA      +E  + N +S  E+    V  MD E         A I S
Sbjct: 1083 DEDEAVSEAGDQDEAATGSEADEAAAVNGASGSEDDDDEVVRMDGEDVVMEDTPAAPIAS 1142

Query: 1591 RASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEE 1650
             +++     N      D  +G +     +DE    D  + +  KKK K E E + R AE 
Sbjct: 1143 TSALQLGGFNWTGRTADFADG-ADAPSSSDEGSDAD-PDFKRKKKKRKHEIEYD-RTAE- 1198

Query: 1651 RLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE 1710
              + K AP +  +FERL+ SSPNSS++W++YM+F L +++ EKAR +  RAL+ IN REE
Sbjct: 1199 --MHKRAPESTADFERLLLSSPNSSYLWVQYMSFQLQLSETEKAREVGRRALKVINFREE 1256

Query: 1711 NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADE 1770
             EKLN+W+A  NLEN +G P  E++  +F+ A ++ D K +HL +  ++++T + + A+E
Sbjct: 1257 QEKLNVWIALLNLENLHGTP--ESLAGLFKDAARHNDSKTIHLRMAAIFDQTGKLEQAEE 1314

Query: 1771 LLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829
               K  KKF  S KVW    +  L+  + E  + ++ R + SL + KH+K IS+ A LE+
Sbjct: 1315 QFQKTCKKFGKSSKVWTEFGEFYLRHGKPEDARKLLSRCIQSLEKRKHLKTISKFAQLEY 1374

Query: 1830 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK 1889
            K G  +RGR++FEGI++ +PKR DLW +YLD E    ++  +R LF+R +S+ +   K K
Sbjct: 1375 KLGDPERGRTIFEGIVNSHPKRFDLWFVYLDMEAGQKNIGALRNLFDRVLSMKMSNHKAK 1434

Query: 1890 FLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
              FKK+L+ EK +G+E+    VK+KA+++ +   A
Sbjct: 1435 AFFKKWLDLEKRIGDEQGQNAVKEKAIQWTQKATA 1469



 Score =  196 bits (499), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 224/860 (26%), Positives = 368/860 (42%), Gaps = 97/860 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFE---AVERGLHKKNKKKKKKTERKANETVDDLGSL 110
           FPRGGG S T  E   I  E   E E     E     K  K K + E+K  +T  D    
Sbjct: 49  FPRGGGSSFTPAEHKAIRHEAALEAEDELRFEDSQATKKSKSKPRVEKKTKKTKRDAKDG 108

Query: 111 FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI 170
             D            +  K ++ GM++   V ++    LV+ LP  L G         PI
Sbjct: 109 GEDAREKSDTIRVEHLNYKRLTPGMRVLCQVTQILPLGLVVSLPNQLLGNI-------PI 161

Query: 171 --LDNEIEANEDNL------------------------LPTIFHVGQLVSCIVLQLDDDK 204
             +  E+ A  + +                        LP IF VGQ V+ +V  +    
Sbjct: 162 THISKELTARLEAMEEAMDEDDNDEDSSDAGPSSGIPELPDIFRVGQYVTAVVSTVHAAG 221

Query: 205 KEI-----------GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG 253
             +              ++ LSL    + +G+S   +  G +L + +KS+EDHGY+L+FG
Sbjct: 222 TSVDPMLKRPDVDRSSHRVELSLVPEEVNEGVSKRDLGPGFILASTIKSVEDHGYVLNFG 281

Query: 254 LPSFTGFLPRNNLAENS--GIDVKP---GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 308
           +P  TGFL   + A+N   G++ K    G+ LQ  +       ++  +S +P TVS  + 
Sbjct: 282 IPEATGFLSFKD-AKNGQHGLNAKKLPIGMALQVCITKKSDNGRIYTVSIEPATVSAGLL 340

Query: 309 KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 368
            ++   S+  ++PG +V   + ++L  G+ L  + +F GT+D +HL       +    + 
Sbjct: 341 SEVS--SVSSVLPGTLVDALITAVLPTGLNLQLMGFFEGTIDQYHLG----LGDVVGRFK 394

Query: 369 QHKKVNARILF--VDPTSRAVGLTLNPYL--LHNRAPPSHV-----KVGDIYDQSKVVRV 419
              K+ AR+++     + +   L+  P++  LH     S        +G + D  KVVRV
Sbjct: 395 LGDKIKARVIYEVTHSSPKRFALSALPHVVSLHGATAGSSALYDAFPMGTVLDAIKVVRV 454

Query: 420 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGL 476
           +   GLL  I        A+V IS V++E V  L      +K G+  R R+ GF  L+GL
Sbjct: 455 EPERGLLCQIQD---GIAAFVHISQVSDEHVNTLSATAGTWKVGTVHRARVTGFFGLDGL 511

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
               L+ S  +      SDV  G  +KG V  +      V   G V A+    H ++  +
Sbjct: 512 VQVSLRQSILDQKFMHVSDVTVGERMKGTVKRLADNALFVSVSGSVDAVVWPNHYADITL 571

Query: 537 VKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
             P K+FK G  +  RVL V  +  R+ +T KKTLV+S L I+S   EAT   ITH  + 
Sbjct: 572 RHPEKRFKAGGTVKGRVLVVDPERNRLCLTLKKTLVESDLPIVSKIEEATPGTITHAVVF 631

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPAS- 647
           K    G  V F+N ++ F P+ E+  D   + +  + +G+VV+ +I+      S I AS 
Sbjct: 632 KNLDKGLLVEFFNNLRAFVPQREMN-DSAVQSADDFPIGKVVRVKILDVNAETSKIVASI 690

Query: 648 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
           R+  L+F         DD    G++V G V  +     ++ ++     +  +   +LA H
Sbjct: 691 RQGALNFQSAIDISGVDD----GAVVHGTVAALHKEHAMLSLVPSKV-RALLSFANLAKH 745

Query: 708 LEHATVM-KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS------HIH 760
                   K+ +K G    +L V+   +    +   Y     A++L   A+       + 
Sbjct: 746 RNLPLAQAKAALKVGEGLKELTVVGRNAEKGFVLVGYKDEKRARRLSLSANSGLAIDKVT 805

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
              V+ G V +    G  VR   +++G        D +    ++   VG   +  +L V+
Sbjct: 806 VGQVMPGLVVSHGRKGAVVRISSKISGSVHALDVAD-ELPPKAQLPPVGTMTQFAVLAVD 864

Query: 821 SETGRITLSLKQSCCSSTDA 840
            +  ++TLS + S  S   A
Sbjct: 865 KDRKQLTLSSRPSNVSPESA 884



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 22/267 (8%)

Query: 217  RLSL-LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGID 273
            RLSL    GL+++ V  G V+   V S    G ++       +G +   ++A+       
Sbjct: 790  RLSLSANSGLAIDKVTVGQVMPGLVVSHGRKGAVVRIS-SKISGSVHALDVADELPPKAQ 848

Query: 274  VKP-GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI----DLLVPGMMVSTR 328
            + P G + Q  V ++D+ RK + LSS P  VS     ++K   I    DL V G  +   
Sbjct: 849  LPPVGTMTQFAVLAVDKDRKQLTLSSRPSNVSPESAGEVKDREINSLGDLKV-GQRLRGF 907

Query: 329  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
            ++S+ ++G+ ++        V I  L + F   +WK+ +N   +V+ +I+ VD     V 
Sbjct: 908  IKSVADHGLFVNIGRNLDARVQIKELFDDF-VKDWKSKFNVDDRVHGQIISVDVEKNQVE 966

Query: 389  LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD------RGLGLLLDIPSTPVSTPAYVT- 441
            ++L           + V+   + D +K  +VD         G+ L I  T +S   + + 
Sbjct: 967  MSLR----SGDRKVAQVETKGLADFAKGQKVDAIVKRTETYGIFLQIEGTKISGLCHKSN 1022

Query: 442  ISDVAEEEVRKLEKKYKEGSCVRVRIL 468
            ISD  + +V +  K +KEG  V+  IL
Sbjct: 1023 ISDTKDADVERAIKNFKEGDRVKAMIL 1049



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 130/288 (45%), Gaps = 33/288 (11%)

Query: 1060 SYDVGSLVQA-EITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 1117
            ++ +G+++ A ++  ++P   L  +   G    +HI++V+D+  N +      +K+G   
Sbjct: 439  AFPMGTVLDAIKVVRVEPERGLLCQIQDGIAAFVHISQVSDEHVNTLSATAGTWKVGTVH 498

Query: 1118 TARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1177
             AR+             L ++S++ S+L       +      DV++G+R+ G V ++ + 
Sbjct: 499  RARVTGF-----FGLDGLVQVSLRQSIL------DQKFMHVSDVTVGERMKGTVKRLADN 547

Query: 1178 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
               +++S  + A   +  + Y    L+  ++RF  G  V G VL ++ E+  L L L+  
Sbjct: 548  ALFVSVSGSVDA--VVWPNHYADITLRHPEKRFKAGGTVKGRVLVVDPERNRLCLTLK-- 603

Query: 1238 QDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
                  KT+  S+  + + I E   G I    + K L    GL+V+   +L   V   E+
Sbjct: 604  ------KTLVESDLPIVSKIEEATPGTITHAVVFKNLD--KGLLVEFFNNLRAFVPQREM 655

Query: 1295 KNICVSDPLSGYDEGQFVKCKVL----EISRTVRGTFHVELSLRSSLD 1338
             +  V      +  G+ V+ K+L    E S+ V       L+ +S++D
Sbjct: 656  NDSAVQSA-DDFPIGKVVRVKILDVNAETSKIVASIRQGALNFQSAID 702



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 116/553 (20%), Positives = 214/553 (38%), Gaps = 83/553 (15%)

Query: 435  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVF 491
            S  A V  +  A+  +R  EK++K G  V+ R+L            LK +  E    +V 
Sbjct: 556  SVDAVVWPNHYADITLRHPEKRFKAGGTVKGRVLVVDPERNRLCLTLKKTLVESDLPIVS 615

Query: 492  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
               +  PG +    V      G +V+F   ++A  P   M++   V+    F +G  +  
Sbjct: 616  KIEEATPGTITHAVVFKNLDKGLLVEFFNNLRAFVPQREMND-SAVQSADDFPIGKVVRV 674

Query: 552  RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY--- 606
            ++L V ++  +I  + ++  +  + AI  S  +  D  + HG +  + K    +      
Sbjct: 675  KILDVNAETSKIVASIRQGALNFQSAIDISGVD--DGAVVHGTVAALHKEHAMLSLVPSK 732

Query: 607  -NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA--------------SRRIN 651
               +  FA  ++    P  +  +   VG+ +K   +    A              +RR++
Sbjct: 733  VRALLSFANLAKHRNLPLAQAKAALKVGEGLKELTVVGRNAEKGFVLVGYKDEKRARRLS 792

Query: 652  LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
            LS           D V +G ++ G+V        VV + +K    G++    +AD L   
Sbjct: 793  LS----ANSGLAIDKVTVGQVMPGLVVSHGRKGAVVRISSK--ISGSVHALDVADELPP- 845

Query: 712  TVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV----- 764
               K+ + P     Q  VL  D +   L LS++ S ++     P  A  +    +     
Sbjct: 846  ---KAQLPPVGTMTQFAVLAVDKDRKQLTLSSRPSNVS-----PESAGEVKDREINSLGD 897

Query: 765  ------VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
                  + G++ ++ + G FV     L       +  D    D    + V   V   I+ 
Sbjct: 898  LKVGQRLRGFIKSVADHGLFVNIGRNLDARVQIKELFDDFVKDWKSKFNVDDRVHGQIIS 957

Query: 819  VNSETGRITLSLKQSCCSSTDASFMQ------EHFLLEEKI-AMLQSSKHNGSELKWVEG 871
            V+ E  ++ +SL+     S D    Q        F   +K+ A+++ ++  G  L+    
Sbjct: 958  VDVEKNQVEMSLR-----SGDRKVAQVETKGLADFAKGQKVDAIVKRTETYGIFLQ---- 1008

Query: 872  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAE 931
             I G+ I G  H+SN     +S  + +DV   I + +        G  ++A IL +   +
Sbjct: 1009 -IEGTKISGLCHKSN-----ISDTKDADVERAIKNFK-------EGDRVKAMILSIDLEK 1055

Query: 932  RLVDLSLKTVFID 944
            R +D  LK  F D
Sbjct: 1056 RRIDFGLKPSFFD 1068


>gi|336389636|gb|EGO30779.1| hypothetical protein SERLADRAFT_444441 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1430

 Score =  337 bits (864), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 270/909 (29%), Positives = 446/909 (49%), Gaps = 111/909 (12%)

Query: 1059 SSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
            SSYD   +G +  A +++I    ++++F       I + EV      V   L   F +G+
Sbjct: 579  SSYDDDNIGLVTDAAVSKILDKAIQVEFYNNVKAIIPLQEVG----QVTGKLADEFSVGK 634

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
             V  RII+   K     +     SI+   L V  + + +      V IG  V G V ++ 
Sbjct: 635  VVKVRIISIDAKNQRMVA-----SIRQVTLNVQSVAATI----TGVEIGSTVEGIVTEIH 685

Query: 1176 NEWALLTISRHLKAQLFILD--SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
                 L++       L  L   + +  +   + +    +G  V   V+     +K   LV
Sbjct: 686  TRNIALSLQPTQAPALISLRNLANHYGTTSAKLEMSLKVGDRVDRLVVVSRNLEKDFVLV 745

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
            +   +     K   +S D ++     G +VGGR+++      G  V+I   + G +H T+
Sbjct: 746  VGNLRGRAVIKKGAVSMDTIEI----GQVVGGRVTRHCHS--GAHVKISTRISGSLHPTD 799

Query: 1294 LKNICVSDPLSGYDEG-------QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1346
                 VSD    YD G         +K  V+ I ++     H  LS R S      T   
Sbjct: 800  -----VSD---NYDAGISFLPVDSILKAVVIGIDKS---NNHATLSTRPSRFLPVKTG-- 846

Query: 1347 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
             L TD     + ++   +L     V+G+VK+V+  G F+ML R +DA+V +  L + +V+
Sbjct: 847  -LVTD-----REIKAFAELKTGDTVRGFVKSVSEHGLFVMLGRGIDARVQIKELFNTFVK 900

Query: 1407 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
              +  F   ++V G +LSV+ L+K+VE+T ++ D  T   ++    ++LH G  V G++K
Sbjct: 901  DWKSRFTANQVVKGSILSVDVLTKKVEMTFRSRD-LTRDGTDSFTFADLHQGQKVTGRVK 959

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI----YRAGEKVKVKILKVDKEKRR 1522
            R+E YGLFI I+ + L GLCH SELS D+ D   T+    +R G+ VK  IL +D+E RR
Sbjct: 960  RIELYGLFIEIDGSTLSGLCHKSELS-DNKDADVTVSLGNFREGDPVKALILSIDQENRR 1018

Query: 1523 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV----AVQDMDM--- 1575
            IS G+K SYF  D        E + D  +++ G    S + +N  +     V D D    
Sbjct: 1019 ISFGLKPSYFVGD------DHEADMDIVLQDRGEGTMSVVCDNGELLAIREVVDSDHSSR 1072

Query: 1576 ------ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGH----------- 1618
                  E ++ G  +LA I    + P  ++            + QN  H           
Sbjct: 1073 KDVSSGEQQNDGEDMLADI----ATPLTQL--------YTASLLQNSAHLLNLEAFQWFD 1120

Query: 1619 ------TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSP 1672
                  +    + D    ++ K   K  ++ ++ A     +    P    +FE+L+  SP
Sbjct: 1121 LGTLSESSSKSSEDGDLGQNKKTFRKGVKDGDLTAD----IHFQPPEAIADFEKLLLGSP 1176

Query: 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1732
            NSSF+WI+Y++F L ++++++AR +  RA+QTIN REE EKLN+W+A  NLEN YG    
Sbjct: 1177 NSSFLWIRYISFQLQLSELDRARELGRRAIQTINFREEQEKLNVWIAMLNLENTYGT--N 1234

Query: 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792
            + +   F+ AL+Y D K +HL L  ++E++E+++ A+E   +  +KF HS KVW    + 
Sbjct: 1235 DTLETTFKDALRYNDAKTLHLRLAAIFEQSEKHEKAEEQYIRACRKFSHSSKVWTLFAEY 1294

Query: 1793 LLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851
             L+  + E  + ++  +L SL  +KH+K IS+ A +E+K G  +RG+++FEG +  +PKR
Sbjct: 1295 YLRCGKLEQARRLLSASLHSLEINKHLKTISRFAQMEYKLGDPERGKTIFEGAVDSHPKR 1354

Query: 1852 TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYV 1911
             DLWS+Y+D E     +  +R +F R  ++++     K+ FKK+L+ E+  G  E    V
Sbjct: 1355 WDLWSVYIDMEAGQCAMQNLRDIFNRVFAINMTGHNAKYFFKKWLDLEQKFGHGEGAIAV 1414

Query: 1912 KQKAMEYVE 1920
            K KAME+V+
Sbjct: 1415 KVKAMEWVQ 1423



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 202/834 (24%), Positives = 358/834 (42%), Gaps = 88/834 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG S T  E   I AE          G+ + N K         +   +++ S+   
Sbjct: 39  FPRGGGTSFTPLEVKAIRAE----------GVDEANVKLISVNFLIRHILKNNVDSI--- 85

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL---------------R 158
               K P     +  K I  GMK++G +  ++   L++ LP  +               R
Sbjct: 86  ----KNPTLKECLNYKRIVPGMKIFGQIMFIHPLALIVSLPNRIVAHVPVTQVTSQLTER 141

Query: 159 GLARAADALDPILDNEIEANEDNL-----LPTIFHVGQLVSCIVLQL----DDDKKEIGK 209
             +  A+ + P   + IE   ++      L  +F+ GQ V  IV+        D   +GK
Sbjct: 142 LESTPANTVQPGEYSHIENGWNSSFHIPELAHLFYPGQYVRAIVIATHAAGSADVCGLGK 201

Query: 210 ---------RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF 260
                    R+I LSL    +  G+    +  G  ++A ++S+EDHGYI   G+   +GF
Sbjct: 202 VRNDAIRASRRIELSLIPERVNAGVQKSDLTTGFTMSAALRSVEDHGYIFDLGISDTSGF 261

Query: 261 LPRNNL--AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDL 318
           L   +   A  +      G L++  V  +    +   LS DP+ ++     ++  +S   
Sbjct: 262 LSFKDYRKAHVNTNHFVVGSLVEVCVTEMSTDGRNCTLSVDPELLASASLSEVTHVSS-- 319

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARIL 378
           ++PG MV + + S    G+ L  L +F G V+ FHL    P    + +Y   +KV AR+L
Sbjct: 320 ILPGSMVQSLIISAKPAGLNLKLLHFFNGVVNEFHL----PAGEME-EYKVGRKVKARVL 374

Query: 379 FVDPTSR----AVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
           +   +S     AV L  +   L  +       +G + +  +V +++   GL++++     
Sbjct: 375 YSVHSSPYPTFAVSLADHIIGLKKKEEVESYPIGTVLEAVRVNKLEGEQGLIVEVQP--- 431

Query: 435 STPAYVTISDVAEEEVRKLEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 492
               +V IS ++++ V  L     +K  +  R R+ G   L+G+    L+ S  E     
Sbjct: 432 GVEGFVHISQISDDHVLSLSATGPWKLNTIHRGRVTGLHPLDGILQLSLRRSVLEQKFLE 491

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
             ++  G V++G +  +      +     V  +    H ++  I  P  +FK+G  +  R
Sbjct: 492 AGEILVGEVLRGTIKQMTKSALFISISANVDGVVWPNHYADIAIKHPTLRFKLGVSIKCR 551

Query: 553 VLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VL + S  +RI +T KKTLV+S L ILSSY +    L+T   ++KI      V FYN V+
Sbjct: 552 VLTIDSEQRRIVLTAKKTLVESTLPILSSYDDDNIGLVTDAAVSKILDKAIQVEFYNNVK 611

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS-------SIPASRRINLSFMMKPTRVSE 663
              P  E+G   G + +  + VG+VVK RI+S        + + R++ L+       ++ 
Sbjct: 612 AIIPLQEVGQVTG-KLADEFSVGKVVKVRIISIDAKNQRMVASIRQVTLNVQSVAATITG 670

Query: 664 DDLVKLGSLVSGVV-DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPG 721
              V++GS V G+V ++ T N  +   +    +   I   +LA+H    +  ++  +K G
Sbjct: 671 ---VEIGSTVEGIVTEIHTRN--IALSLQPTQAPALISLRNLANHYGTTSAKLEMSLKVG 725

Query: 722 YEFDQLLVLDN--ESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
              D+L+V+    E   +L+          ++       I    VV G V     +G  V
Sbjct: 726 DRVDRLVVVSRNLEKDFVLVVGNLRGRAVIKKGAVSMDTIEIGQVVGGRVTRHCHSGAHV 785

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           +   R++G    +   D   A +S    V   +++ ++ ++      TLS + S
Sbjct: 786 KISTRISGSLHPTDVSDNYDAGIS-FLPVDSILKAVVIGIDKSNNHATLSTRPS 838


>gi|108742058|gb|AAI17595.1| Pdcd11 protein [Danio rerio]
          Length = 1431

 Score =  337 bits (863), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 354/1438 (24%), Positives = 667/1438 (46%), Gaps = 141/1438 (9%)

Query: 54   FPRGGGHSLTQRER--DEIHAEVDAEFEA-VERGLHKKNKKKKKKTERKANETVDDLGSL 110
            FPRGG    T+R++  D I  EVD  F+   +    KK   K+ +  +   + VD+    
Sbjct: 5    FPRGG----TERKKPTDLIPHEVDNLFDTPAKVVKKKKKSVKQDEAPKSKKQKVDE---- 56

Query: 111  FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADAL 167
              + I          + L++++ G  + G V EV++ ++V+ LP GL G   +    DA 
Sbjct: 57   --ENIKLNTTTTVQILHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAY 114

Query: 168  DPILDNEIEANE--DNLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK 223
              IL+++++ ++  + ++P   +F  G L+ C+V  LD  K+  G   + LS+    + K
Sbjct: 115  TNILNDKLDTDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKE--GHISLKLSINPKDVNK 172

Query: 224  GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 283
             L+   ++  M L+  V+S+EDHGY++  G+     FLP+   + +S  D+  G  +  +
Sbjct: 173  ALNSVALKPAMTLSGCVESVEDHGYLVDIGIGGTKAFLPKK--STSSKQDLYVGQYVLVL 230

Query: 284  VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
            +  +  + +VV LS +P  + K   +  +G ++D L+PG+++   V+ +  +G++++FL+
Sbjct: 231  IEDVKDSGRVVRLSQNPQALVKACAETKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLS 290

Query: 344  YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS 403
             FTG VD  HL     +T     Y++ +++ ARIL+V P++R VGL+L  +LL    PP 
Sbjct: 291  SFTGVVDFLHLDEDKEST-----YSKGQEILARILYVQPSTRQVGLSLRSHLL----PPG 341

Query: 404  HV--------KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
                      +VG++    ++  +    G L+ +      + A+V   ++ +E   +L+ 
Sbjct: 342  GAVLDLHFSERVGEVVQGCQMTSLHHYSGALMKMLD---GSRAFVH-RNLLKEPKEELDT 397

Query: 456  KYKEGSCVRV-RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
             +       + RI+ +  +E +    L+ S+ E   F+  D+K G +V+G V  +   G 
Sbjct: 398  NHLMSQTQHILRIINYSPIEQIYQATLRWSSIETPFFSCQDIKVGQIVEGTVTDLQKHGV 457

Query: 515  IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS 572
             V+    ++ + P  H+++  +  P KKF  G ++  RVL V++++  + +T KK LV+S
Sbjct: 458  YVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLSVEAQKKLLILTRKKALVES 517

Query: 573  KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
             L I  SY++A    I+HG++  I++ GC VRFY  V+G  P  EL  +    P  ++ V
Sbjct: 518  TLPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFV 577

Query: 633  GQVVKCRIMSSIPASRRINLSFM-MKPTRVSEDDLVKLGSLVSGVVDVVTP----NAVVV 687
            GQVVK +++      + + LSF  +    V E+ + K   +V  +VD        N + V
Sbjct: 578  GQVVKVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEV 637

Query: 688  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN-ESSNLLLSAKYSLI 746
             +I +   +  +PT HL+DH+ +   +   ++ G     L+ L N +   ++L+ K  L 
Sbjct: 638  SIIPEEV-QAFLPTTHLSDHVTNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLK 696

Query: 747  NSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
               +   +P + S +     + G+V NI+  G F+ F   + G AP +   D    + S 
Sbjct: 697  AYIEDGAVPKNFSELQVGMQMVGWVKNIMPYGVFISFPYGVFGLAPIANMGDQFIKETSG 756

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL-LEEK--IAMLQSSKH 861
             + + Q+V + + +++ E     +SLK S  S ++  F       L+E+  I+ +++ + 
Sbjct: 757  IFDIDQTVVAKVTNLDEEKQGFLVSLKLSELSLSENEFHTRLIQGLKERRNISEMRAGRG 816

Query: 862  NGSELKWVEGFIIGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
            +   L  +    +G  ++  V ++ + G V+++ ++ S V    + +   G  +  G  +
Sbjct: 817  DSDVLWKLSALTVGDQMKMIVGDTTEDGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKL 876

Query: 921  QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEI 980
             A IL +   +  V +SL+                +   +K E  KD        A V+ 
Sbjct: 877  NAVILHIDFVKSQVHVSLR---------------PKLNIKKEELEKD----ARFTAKVQF 917

Query: 981  VKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL 1040
              +++ V+SL   +    + +    N+  F  K+F  G  +   V        AG  L  
Sbjct: 918  ADKDFAVVSLATTSDLTFFPTRPHLNS-IFDSKKFSVGSCLDVKVDDPNCEDLAGFPL-- 974

Query: 1041 LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
               IS   +++     K +   +G L++  + ++K L + +    G  GR+H++++  + 
Sbjct: 975  ---ISYQSSNAKHEQHKPNEERLGELMKVTVKKLKALCVLVNLPSGNTGRVHVSQIL-EF 1030

Query: 1101 SNVVENLFSNFKIGQTVTARIIAKS----------NKPDMKKSFLWELSIKPSMLTVSEI 1150
             ++     S  K+G  + AR+I             + PD   S + ELS   S L VS++
Sbjct: 1031 PDIGSCPTSVLKVGMEMEARVIGGRAVRAHNFLAISHPDYNIS-IPELSFLESKLKVSDM 1089

Query: 1151 GSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF----ILDSAYEPSELQEF 1206
             +KL         G  +  +  K   +  LL +  H+K  +     +L    +    +  
Sbjct: 1090 VNKLE----KYKPGDDIICFPSKYIKKEQLLEV--HVKPDIMGAVPLLAMCNKLGLSKHP 1143

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            QR F  G+A++  V+S++ +K        P Q  +S          M T           
Sbjct: 1144 QRLFKPGQALSAKVVSVDPKK--------PIQFSLSLTGTHKLEPGMNTL--------AM 1187

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGT 1326
            + KI     GL++ +     G  H T+L +     PL  Y EGQ ++C V+E     +  
Sbjct: 1188 VQKIQPH-KGLMLALPYENTGLAHLTDLSDSYTEKPLESYKEGQIIRCHVIE-----QKI 1241

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1386
                +SLR S     + +  D+  D +     ++ I D+     ++GYV +V  +G F+ 
Sbjct: 1242 KEFNVSLRPS---RLNKDKHDIVEDPE-----IQSIADIKEGQSIRGYVSSVNDQGIFLR 1293

Query: 1387 LSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            LSR +  +VL  N +  Y+  P+   K      LVA +VLSV+  +  V ++L + D+
Sbjct: 1294 LSRTITGRVLFQNATKYYMNDPKVLIKHVGQNALVAAKVLSVDSENLHVNLSLLSKDT 1351



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 2/167 (1%)

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
            +D+    IV+G V ++   G ++ +   +   +   +L+D  +++PEK+F  G  V  RV
Sbjct: 437  QDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRV 496

Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1482
            LSVE   K + +T K +    ++     + S+   G I  G +  ++ +G  +     ++
Sbjct: 497  LSVEAQKKLLILTRKKALVE-STLPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYE-DV 554

Query: 1483 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
             GL  + EL+ + V N E ++  G+ VKVK+LK D+EK+ + L  KS
Sbjct: 555  KGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEKKMLRLSFKS 601



 Score = 61.6 bits (148), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 108/502 (21%), Positives = 205/502 (40%), Gaps = 67/502 (13%)

Query: 1018 GQSVIATVMALPSSSTAGRL----LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
            GQ V+  +  +  S    RL      L+KA +ET     K+     +   G L+   +  
Sbjct: 224  GQYVLVLIEDVKDSGRVVRLSQNPQALVKACAET-----KQGWTLDNLLPGLLIHGCVKR 278

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            + P  L + F   F G +    +++DK        S +  GQ + ARI+    +P  ++ 
Sbjct: 279  VTPHGLIVTFLSSFTGVVDFLHLDEDKE-------STYSKGQEILARILYV--QPSTRQ- 328

Query: 1134 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
                LS++  +L        L F E    +G+ V G          + ++  +  A + +
Sbjct: 329  --VGLSLRSHLLPPGGAVLDLHFSE---RVGEVVQG--------CQMTSLHHYSGALMKM 375

Query: 1194 LDSA---YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1250
            LD +      + L+E +         T H++S  + + +LR++     + I   T+  S+
Sbjct: 376  LDGSRAFVHRNLLKEPKEELD-----TNHLMS--QTQHILRIINYSPIEQIYQATLRWSS 428

Query: 1251 DNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
                 F    I  G IV G ++ +     G+ V+IG H+ G +    L ++ + +P   +
Sbjct: 429  IETPFFSCQDIKVGQIVEGTVTDLQKH--GVYVRIGEHIRGMIPRIHLADVTLKNPEKKF 486

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
              G  VKC+VL +    +      L+ + +L              V++     +   D  
Sbjct: 487  YPGLKVKCRVLSVEAQKKLLI---LTRKKAL--------------VESTLPIFQSYSDAR 529

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
            P  I  G+V  +   GC +     +   V +  L+   V +PE+ F +G++V  +VL  +
Sbjct: 530  PGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCD 589

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1486
               K + ++ K+       + +I    +  VG +V  ++ R    GL ++I    +    
Sbjct: 590  EEKKMLRLSFKSVTEEDVREEQIAKF-DFIVGKMVDARVCRKVLNGLEVSIIPEEVQAFL 648

Query: 1487 HVSELSEDHVDNIETIYRAGEK 1508
              + LS DHV N   ++ A E+
Sbjct: 649  PTTHLS-DHVTNCLPLWMALEE 669



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 151/377 (40%), Gaps = 44/377 (11%)

Query: 1156 FEEC-DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
            F  C D+ +GQ V G V  +      + I  H++  +  +  A     L+  +++F+ G 
Sbjct: 433  FFSCQDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLA--DVTLKNPEKKFYPGL 490

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK---IL 1271
             V   VLS+  +KKLL L  +     + + T+ I       F    D   GRIS    + 
Sbjct: 491  KVKCRVLSVEAQKKLLILTRK---KALVESTLPI-------FQSYSDARPGRISHGFVVC 540

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
                G +V+    + G V   EL    V++P   +  GQ VK KVL+     +    + L
Sbjct: 541  IKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEKK---MLRL 597

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
            S +S              T+ D   + + K + +   M+     + V +     ++  ++
Sbjct: 598  SFKSV-------------TEEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEVSIIPEEV 644

Query: 1392 DAKVLLSNLSDGYVESPEKEFPI------GKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
             A +  ++LSD          P+      G  +   +       K + +T K        
Sbjct: 645  QAFLPTTHLSDHVTNC----LPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLKAYIE 700

Query: 1446 QSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
               +  N S L VG  ++G +K +  YG+FI+     + GL  ++ + +  +     I+ 
Sbjct: 701  DGAVPKNFSELQVGMQMVGWVKNIMPYGVFISFP-YGVFGLAPIANMGDQFIKETSGIFD 759

Query: 1505 AGEKVKVKILKVDKEKR 1521
              + V  K+  +D+EK+
Sbjct: 760  IDQTVVAKVTNLDEEKQ 776



 Score = 42.7 bits (99), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 106/261 (40%), Gaps = 45/261 (17%)

Query: 1302 PLSG-YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1360
            PLS  +  G  ++C V  +     G  H+ L L        S N  D++  +++      
Sbjct: 133  PLSKLFTPGMLIRCVVSSLDSAKEG--HISLKL--------SINPKDVNKALNSVA---- 178

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV-- 1418
                L P M + G V++V   G  + +      K  L   S     S +++  +G+ V  
Sbjct: 179  ----LKPAMTLSGCVESVEDHGYLVDIGIG-GTKAFLPKKS----TSSKQDLYVGQYVLV 229

Query: 1419 -------AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1471
                   +GRV+    LS+  +  +K      A   +   L NL  G ++ G +KRV  +
Sbjct: 230  LIEDVKDSGRVVR---LSQNPQALVKAC----AETKQGWTLDNLLPGLLIHGCVKRVTPH 282

Query: 1472 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1531
            GL +T   ++  G+     L ED     E+ Y  G+++  +IL V    R++ L ++S  
Sbjct: 283  GLIVTFL-SSFTGVVDFLHLDEDK----ESTYSKGQEILARILYVQPSTRQVGLSLRSHL 337

Query: 1532 FKNDADNLQMSSEEESDEAIE 1552
                   L +   E   E ++
Sbjct: 338  LPPGGAVLDLHFSERVGEVVQ 358


>gi|159489442|ref|XP_001702706.1| RNA binding rRNA processing protein [Chlamydomonas reinhardtii]
 gi|158280728|gb|EDP06485.1| RNA binding rRNA processing protein [Chlamydomonas reinhardtii]
          Length = 1280

 Score =  335 bits (860), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 157/298 (52%), Positives = 222/298 (74%), Gaps = 4/298 (1%)

Query: 1630 NRHAKKKEKEEREQEIRAAE-ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1688
            ++ AKK+ KE+ E+EIR AE  RL    AP+TP +FERLV +SPNSSFVWIKYMA  + +
Sbjct: 981  SKAAKKRLKEQHEREIREAELARLSGTAAPQTPADFERLVLASPNSSFVWIKYMAHHIGL 1040

Query: 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN--PPEEAVVKVFQRALQYC 1746
             D++ AR +A+RAL +IN REE EK N+WVA+ NLEN +G    PEEA + + +RAL Y 
Sbjct: 1041 GDMDAARKVAQRALDSINYREEGEKFNVWVAWLNLENAFGTQPSPEEAAMGLLRRALSYT 1100

Query: 1747 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR-LLKQQQEGVQAVV 1805
            D KK+++A LG++ER+ + +LA+++   + KKF  SCKVW+R ++R L+K   EG + ++
Sbjct: 1101 DQKKMYMAALGIFERSGKEELAEQVAKTLTKKFGGSCKVWVRALERALVKDDGEGARKLL 1160

Query: 1806 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1865
            +RA  SLP  KHIK +++ A+ EF+ G A+RGR + EG+L  YPKR DLW++Y+DQEI+ 
Sbjct: 1161 ERATQSLPGRKHIKLLTRAALSEFRLGSAERGRGILEGVLRNYPKRLDLWNVYIDQEIKT 1220

Query: 1866 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
            G+   IR LFERA  L LPPKKMKFLF++YLEYEK  G++  +E+VK++AME+VE++L
Sbjct: 1221 GEQPRIRALFERATHLPLPPKKMKFLFRRYLEYEKEEGDDASVEHVKRRAMEFVENSL 1278



 Score =  157 bits (398), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 157/587 (26%), Positives = 254/587 (43%), Gaps = 99/587 (16%)

Query: 976  AIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSV--IATVMALPSSST 1033
            A V+  ++ + VL  P    S   A + DY  ++    Q L G  V     V  L     
Sbjct: 426  ATVDAARQRFTVLLRPSATASSDAAYLIDY-FREMAALQVLRGDEVKDFGLVADLDGHPD 484

Query: 1034 AGRLLLLLKA-ISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRI- 1091
             G + L LK  ++     ++   +       G+ V+A +  I+P E  L   +  H  + 
Sbjct: 485  VGLVELSLKPELTAAAKDAAASKEALRKLKPGTQVEAVVEGIRPGEY-LILSLPSHAHLL 543

Query: 1092 ---HITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
                IT+ N  + + V   F+     Q V A ++ +    +  K  + +LS++PS L ++
Sbjct: 544  AYAAITDFNTPRPDAVPRKFT-----QVVEAVVLGRLQGGEGHKRGVMDLSLRPSRLAIA 598

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1208
                K   +   V +G  V G                  +   F+L    EP        
Sbjct: 599  R---KAEPQAPPVVLGDLVPGQ-----------------QLTCFVL----EP-------- 626

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
                G  V   VL++N +K  L L L P                      EG +V GRI 
Sbjct: 627  ----GAPVLARVLAVNAKKHTLDLSLAPLP-------------------AEGALVMGRI- 662

Query: 1269 KILSGVG-GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
              LS  G G+ V +GP   GRV  T++ +  V D L+G  EG +V+ +VL       G F
Sbjct: 663  --LSASGAGVRVSLGPKRAGRVALTDIHDAAVPDALAGLTEGTYVRVRVLGKD----GDF 716

Query: 1328 HVELSLRSS-------------------LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
             V LSLR S                           ++        P   L  +  +   
Sbjct: 717  AV-LSLRPSRGGAIAGAAGAAGAAAAAGGKKGKDAAAAKDQAAAAAPQPELLDVSGVKVG 775

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
              + GYVK   +KG F+ L R  D ++ L NLSDG++E P   FP G  +  RV+++E  
Sbjct: 776  DSLGGYVKRCDAKGVFVALDRYRDGRIKLGNLSDGFIEDPAAAFPPGCRLEARVVALE-A 834

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE-NTNLVGLCH 1487
              R+E++L+T+    +S + I +L+ L  G +V G+++RVE +G+F+ +E N+++VGL H
Sbjct: 835  DGRLELSLRTAPRSGSSGAAIQSLAELKEGQLVSGRVRRVEKFGVFVEVEGNSSVVGLAH 894

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
            +SEL++  V +I  +++  + VK  + K+D    R+SL MK S  + 
Sbjct: 895  ISELADGAVKDISALFKPKQAVKAVVTKIDAAANRLSLSMKPSVLQQ 941



 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 153/714 (21%), Positives = 263/714 (36%), Gaps = 206/714 (28%)

Query: 757  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
              +   +++ GYV N+     +VRFL  LTG A   +  D   ++  + +  GQSVR  +
Sbjct: 366  GEVSEGALLSGYVANVTGDAVYVRFLAGLTGRAGLPQLSDVFVSNPRELFAEGQSVRCLV 425

Query: 817  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
              V++   R T+ L+ S  +S+DA+++ ++F    ++A LQ                   
Sbjct: 426  ATVDAARQRFTVLLRPSATASSDAAYLIDYF---REMAALQ------------------- 463

Query: 877  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
            V+ G   E  DFG+V   + H DV                                LV+L
Sbjct: 464  VLRG--DEVKDFGLVADLDGHPDVG-------------------------------LVEL 490

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKEN-YLVLSLPEYNH 995
            SLK       ++A ++++A +K         L     V A+VE ++   YL+LSLP + H
Sbjct: 491  SLKPELTAAAKDAAASKEALRK---------LKPGTQVEAVVEGIRPGEYLILSLPSHAH 541

Query: 996  SIGYASVSDYNT-------QKFPQ-------KQFLNGQSVIATVMALPSSSTAGRLLLLL 1041
             + YA+++D+NT       +KF Q        +   G+     VM L  S    RL +  
Sbjct: 542  LLAYAAITDFNTPRPDAVPRKFTQVVEAVVLGRLQGGEGHKRGVMDL--SLRPSRLAIAR 599

Query: 1042 KAISET-------------------ETSSSKRAK------KKSSYDV--------GSLVQ 1068
            KA  +                    E  +   A+      KK + D+        G+LV 
Sbjct: 600  KAEPQAPPVVLGDLVPGQQLTCFVLEPGAPVLARVLAVNAKKHTLDLSLAPLPAEGALVM 659

Query: 1069 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 1128
              I       +R+  G    GR+ +T+++D     V +  +    G  V  R++ K    
Sbjct: 660  GRILSASGAGVRVSLGPKRAGRVALTDIHD---AAVPDALAGLTEGTYVRVRVLGKDGD- 715

Query: 1129 DMKKSFLWELSIKPSMLTVSEIGSKL------------------------------LFEE 1158
                     LS++PS        +                                L + 
Sbjct: 716  ------FAVLSLRPSRGGAIAGAAGAAGAAAAAGGKKGKDAAAAKDQAAAAAPQPELLDV 769

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL--------FILDSAYEPSELQEFQRRF 1210
              V +G  + GYV + D +   + + R+   ++        FI D A            F
Sbjct: 770  SGVKVGDSLGGYVKRCDAKGVFVALDRYRDGRIKLGNLSDGFIEDPAAA----------F 819

Query: 1211 HIGKAVTGHVLSINKEKKL---LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
              G  +   V+++  + +L   LR   R    G + +++          + EG +V GR+
Sbjct: 820  PPGCRLEARVVALEADGRLELSLRTAPRSGSSGAAIQSL--------AELKEGQLVSGRV 871

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
             ++      + V+    + G  H +EL +  V D  + +   Q VK  V +I        
Sbjct: 872  RRVEKFGVFVEVEGNSSVVGLAHISELADGAVKDISALFKPKQAVKAVVTKIDAAAN--- 928

Query: 1328 HVELSLRSSL------------------DGMSSTNSSDLST--DVDTPGKHLEK 1361
             + LS++ S+                     +ST + DL+T  D D  GK L K
Sbjct: 929  RLSLSMKPSVLQQAEEAAAAAGGGAGKRKPTTSTGALDLTTPWDGDKAGKGLSK 982



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 7/109 (6%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFG- 112
           FPRGG  +LT  ER ++     AE EA      K+ K KK +T +K     DD  + FG 
Sbjct: 42  FPRGGADALTALERKQLAEAAKAEVEAEFA-EGKQQKSKKPRTGKKGE---DDEDAFFGR 97

Query: 113 --DGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG 159
               + GK+ ++   + +KN+S G KLWG+V EV  + LVI LP GLRG
Sbjct: 98  QAASLEGKMAKHVELLRVKNLSVGTKLWGMVLEVTPRGLVISLPHGLRG 146



 Score = 43.9 bits (102), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 3/127 (2%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            ++S   ++ GYV NVT    ++     L  +  L  LSD +V +P + F  G+ V   V 
Sbjct: 367  EVSEGALLSGYVANVTGDAVYVRFLAGLTGRAGLPQLSDVFVSNPRELFAEGQSVRCLVA 426

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1482
            +V+   +R  V L+ S + ++  +  I+    +    ++ G    V+ +GL   ++    
Sbjct: 427  TVDAARQRFTVLLRPSATASSDAAYLIDYFREMAALQVLRGD--EVKDFGLVADLDGHPD 484

Query: 1483 VGLCHVS 1489
            VGL  +S
Sbjct: 485  VGLVELS 491



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 47/252 (18%), Positives = 110/252 (43%), Gaps = 46/252 (18%)

Query: 436 TPAYVTISDVAEEEVRKLE------KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGL 489
            PA+  +++  E +V+  E      KK+K G+ +  R++G+R ++G+AT  ++ S     
Sbjct: 229 APAFCHVANALETKVKPEEAAADMTKKFKAGAKLPARVIGYRLMDGMATVTVRPSQV--- 285

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF------ 543
                    G  V+ +V+  ++  A    P           ++  E   PG ++      
Sbjct: 286 ---------GEKVEARVL--EALLAPKAAP-----------LASLEAAVPGGRYSGLVTG 323

Query: 544 ---KVGAELVF---RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
              ++G  + F    V    +  + +   +T  +   ++  ++ E ++  +  G++  + 
Sbjct: 324 FHDRLGVFVTFFGGVVGAAAAAELGLQPGQT-AQDVFSVGQAFGEVSEGALLSGYVANVT 382

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
               +VRF  G+ G A   +L       P  ++  GQ V+C +++++ A+R+   + +++
Sbjct: 383 GDAVYVRFLAGLTGRAGLPQLSDVFVSNPRELFAEGQSVRC-LVATVDAARQ-RFTVLLR 440

Query: 658 PTRVSEDDLVKL 669
           P+  +  D   L
Sbjct: 441 PSATASSDAAYL 452



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 92/230 (40%), Gaps = 59/230 (25%)

Query: 501 VVKGKVIAVDSFGAIVQFP-------GGVKALCPLPHMSEFEIVKP-------GKKFKVG 546
           V K +V+ VD+F              G   A C + +  E + VKP        KKFK G
Sbjct: 201 VRKAEVMRVDAFAGPGLLLRLPGLPEGPAPAFCHVANALETK-VKPEEAAADMTKKFKAG 259

Query: 547 AELVFRVLGVK--SKRITVTHK-------------KTLVKSKLAILSSYAEATDRLITHG 591
           A+L  RV+G +      TVT +             + L+  K A L+S   A       G
Sbjct: 260 AKLPARVIGYRLMDGMATVTVRPSQVGEKVEARVLEALLAPKAAPLASLEAAVPGGRYSG 319

Query: 592 WITKI-EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
            +T   ++ G FV F+ GV G A  +ELGL PG     ++ VGQ                
Sbjct: 320 LVTGFHDRLGVFVTFFGGVVGAAAAAELGLQPGQTAQDVFSVGQAF-------------- 365

Query: 651 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                     VSE      G+L+SG V  VT +AV V  +A    +  +P
Sbjct: 366 --------GEVSE------GALLSGYVANVTGDAVYVRFLAGLTGRAGLP 401


>gi|452846030|gb|EME47963.1| hypothetical protein DOTSEDRAFT_147032, partial [Dothistroma
            septosporum NZE10]
          Length = 1780

 Score =  335 bits (859), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 272/912 (29%), Positives = 455/912 (49%), Gaps = 107/912 (11%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTAR 1120
            +G +V+A I  IK  ++ ++      GR+ ++E  D  D+ N        FK    +  +
Sbjct: 911  LGRVVKARIASIKATQMNVRLADNVQGRVDVSEAFDSWDEINNKAAPLQKFKHNDLIDVK 970

Query: 1121 IIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
            ++   +  + +         K  ++ELS K S +   E G + L     V  G     +V
Sbjct: 971  VLGIHDARNHRFLPISHRQGKVPVFELSAKKSRV---EAGDEALLGLDSVQPGSTYLAFV 1027

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
                +    + +S +++ ++ ++D + +  +LQ  + RF IG A+   V S++     L 
Sbjct: 1028 NNHGDNCVWVNLSPNVRGRVALMDLSDDVGQLQNVENRFRIGCALRVKVKSVDVSANRLD 1087

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
            L  R  +       V   ND     +  G ++  R++K    +  + VQI   + G V  
Sbjct: 1088 LTARHNESS----EVKTLND-----LKAGMVIPARVTKTTERL--VNVQITDTISGVVPL 1136

Query: 1292 TELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1351
             EL +       + Y++   V+  VL +    +  F   LSLR S           LS+ 
Sbjct: 1137 AELSDDFEQANPAQYNKNDIVRACVLAVDVPNKKIF---LSLRPS---------KVLSSS 1184

Query: 1352 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1411
            + T    +     L    IV+G++K+VT KG F+ L   +DA V +S+LSD +V+  +  
Sbjct: 1185 LPTTDAQVSDTGSLKVGNIVRGFIKHVTDKGVFVSLGATVDALVRISDLSDRFVKDWKSL 1244

Query: 1412 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1471
              I +LV GR++SV+  +K+V+++LK S     + +   N+ ++  GD V G++++VE +
Sbjct: 1245 HEIDQLVKGRIMSVDHATKQVQMSLKQSHV-DGNYTPPLNIGDIKAGDTVTGRVRKVEDF 1303

Query: 1472 GLFITIENTN--LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            G F+ IENT   L GLCH SE++   V+++  +Y  G+ VK K+L VD E R+ISLG+K+
Sbjct: 1304 GAFVDIENTQPRLSGLCHRSEVAARRVEDVRKLYSTGDVVKAKVLSVDVENRKISLGLKA 1363

Query: 1530 SYFKNDAD--------------NLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM 1575
            SYF +D +               L  S   E  E  +  G  +    L+N+    QDMD 
Sbjct: 1364 SYFDDDDEEKDEEESEDEDVETGLVESGGVEVMEGNDAEGGID----LDNNQ---QDMDS 1416

Query: 1576 ESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD-------NGISQNQGHTD---EAKTI 1625
            + ED    V+  ++            DDE+P ++       NG   N    D    A   
Sbjct: 1417 DEED----VVDGMD------------DDEEPALEFTSGLKTNGFDWNGSALDGNINAAGY 1460

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM 1685
            + + +  A+KK K  +  EI+      L+K  PR+  +FER +   P++S +WI+YMAF 
Sbjct: 1461 ESEPDAIARKKRKRNK-PEIKEDLTGDLDKYGPRSVSDFERQLLGQPSNSLLWIQYMAFQ 1519

Query: 1686 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1745
            + ++++++AR IAERA++TI+IRE  EKLN+WVA+ NLE EYG+  +E V +VF+ A Q 
Sbjct: 1520 IQLSELDEARRIAERAIRTIHIRETEEKLNVWVAWLNLEVEYGD--DEHVDEVFKEACQV 1577

Query: 1746 CDPKKVHLALLGLYERTEQNKLADELLYKMI--KKFKHSCKVWLRRVQRLL--KQQQEGV 1801
             D  ++H  L  +Y  + + + AD +  +MI  K F+    VWL     L+  K      
Sbjct: 1578 QDSLEMHEKLASIYISSGKLEKADSIYERMIGNKNFRAVPDVWLNYATFLMSDKNAPGRA 1637

Query: 1802 QAVVQRALLSLPRHKHIKFISQTAILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859
            +A++ +A+ S+   KH    +  A LEF  K+G A+RGR++FE IL+E+PK +  W  ++
Sbjct: 1638 RALLPKAMQSIRIQKHRDLSADFAALEFKTKHGNAERGRTIFENILAEWPKWSAGWDRFI 1697

Query: 1860 DQEI-----------RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908
            D E            +   +D  R LFER  +L +  ++ KF+FKK+ E+E+  G ++ +
Sbjct: 1698 DLERSRVSKAKDEAEKSDAIDKTRALFERVAALKMKKRRAKFVFKKWFEFEEKEGTDKDM 1757

Query: 1909 EYVKQKAMEYVE 1920
              VK  A E  E
Sbjct: 1758 GRVKLLAKECHE 1769



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 196/851 (23%), Positives = 347/851 (40%), Gaps = 92/851 (10%)

Query: 53  VFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFG 112
            FPRGG   LT  ER +I A+ + +    E G                    D+ G LF 
Sbjct: 57  AFPRGGAEVLTPIERKQIQAQAERDVLLEEEG--------------GVTNAADEDGELFD 102

Query: 113 ---------------DGISG----KLPRYANK-ITLKNISAGMKLWGVVAEVNEKDLVIC 152
                          DG  G    K+     + ++ KN+  G  + G V  +  +D+ + 
Sbjct: 103 EEAAAPAKKKQKKTRDGEKGDKKLKITEVRKEGLSYKNLVVGSSVLGRVTAITGRDIALA 162

Query: 153 LPGGLRGLA-------RAADALDPILDNEIEANEDNL----LPTIFHVGQLVSCIVLQLD 201
           LP  L G A       R    ++ +L ++ +  ++      L  +F+VGQ +   +    
Sbjct: 163 LPNNLTGFAPILSISERLTSRIERLLASDEKPEDEEDEDVDLKQLFYVGQWLRASITATG 222

Query: 202 DDKKEIGKRK--IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSF 257
            + K+  K K  I LSL  + +   L  E V     + A V+S+EDHG ++  GL   S 
Sbjct: 223 TEPKDGSKSKKHIELSLDPAAVNGALREENVVTNSTIQAAVRSVEDHGIVMDIGLSESSV 282

Query: 258 TGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLK---- 312
            GF  +  L     +D ++ G +L  +V     + KVV L+ DP   S   T++ K    
Sbjct: 283 KGFASKKALGSAYSLDQIQEGQVLLCLVTGKASSGKVVNLTPDPSKFS-VATREGKDKDK 341

Query: 313 ------GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH-LQNTFPTTNWKN 365
                   ++D  +PG  V   +      G+    +     T D+ H   + FP  N K 
Sbjct: 342 MPFVAEAPTVDAFLPGTAVDVLITETGPKGIAGKIMGMLDVTSDVVHSAASQFPDMNQK- 400

Query: 366 DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGL 425
            Y    K  ARI+F  P       T +     ++     + +    + +KV  +    G+
Sbjct: 401 -YRVGSKAKARIIFSIPQDDGARKTKSEATELSQP----LALSSTLEDAKVTSIVADRGI 455

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKK--YKEGSCVRVRILGFRHLEGLATGILKA 483
            L++        A+  IS +++ +V  +     YK  S  +VRI  +  ++ +    LK 
Sbjct: 456 FLELTD---GKKAFAHISQLSDSKVDSISTAGPYKPESTHKVRITAYNPVDNIYYVSLKK 512

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAV------DSFGAIVQFPGGVKALCPLPHMSEFEIV 537
           S  +       D+  G VV G V  +         G +V+    +  L P  H+S+  + 
Sbjct: 513 SVLDQPFLRLEDLPIGGVVTGTVDKLILGGKSGVTGVLVKLSDSITGLVPEMHLSDAHLT 572

Query: 538 KPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
            P +KF+ G  +  R+L V +++  + VT KK+LV     + + Y +    + + G I  
Sbjct: 573 HPERKFREGYPIKGRILSVDTEKRHVRVTLKKSLVDDSATVWNDYKDLQPGMESKGTIVS 632

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           +  +G  V+FY  V+ + P +E+      +P   + +GQ V  ++++  P S+ + ++  
Sbjct: 633 LLPNGAAVQFYGPVRAWLPVAEMSETFIEKPEKHFRLGQTVTVKVLNVKPESQEMKVTCK 692

Query: 656 MKPTRVSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEH 710
              T   E     + +  G LVS  V     +++   +      +GTI   H+ D     
Sbjct: 693 DSSTFDDEQQSAWNALSGGQLVSATVSEKLADSITAEL--DNGIRGTIRIGHVIDGPASK 750

Query: 711 ATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSAQQLPSDASHI--HPNSVVH 766
           A      I+ G +   LLVL  +  S  ++LS K S+I  ++      S +       VH
Sbjct: 751 AEKELKRIRVGQKLSNLLVLTKQERSHTVVLSNKPSMIEDSKACALIKSFVDAREGQKVH 810

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
           G+V NI   G +  F   + G  P+++      A  S      Q+V + ++  +    R 
Sbjct: 811 GFVRNITPEGVYAEFANGIVGLIPKNQVPADSLAQPSFGLRKDQTVTAYVIGTDGIHERF 870

Query: 827 TLSLKQSCCSS 837
            LS+++   ++
Sbjct: 871 ILSMREQAATN 881



 Score = 74.3 bits (181), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 139/311 (44%), Gaps = 51/311 (16%)

Query: 1260 GDIVGGRISKIL----SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            G +V G + K++    SGV G++V++   + G V    L +  ++ P   + EG  +K +
Sbjct: 528  GGVVTGTVDKLILGGKSGVTGVLVKLSDSITGLVPEMHLSDAHLTHPERKFREGYPIKGR 587

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L +    R   HV ++L+ SL   S+T  +D               +DL P M  +G +
Sbjct: 588  ILSVDTEKR---HVRVTLKKSLVDDSATVWNDY--------------KDLQPGMESKGTI 630

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
             ++   G  +     + A + ++ +S+ ++E PEK F +G+ V  +VL+V+P S+ ++VT
Sbjct: 631  VSLLPNGAAVQFYGPVRAWLPVAEMSETFIEKPEKHFRLGQTVTVKVLNVKPESQEMKVT 690

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1495
             K  DS T    + +  + L  G +V   +   E     IT E  N              
Sbjct: 691  CK--DSSTFDDEQQSAWNALSGGQLVSATVS--EKLADSITAELDN-------------- 732

Query: 1496 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVG 1555
               I    R G  +     K +KE +RI +G K S        L ++ +E S   +    
Sbjct: 733  --GIRGTIRIGHVIDGPASKAEKELKRIRVGQKLSNL------LVLTKQERSHTVV---- 780

Query: 1556 SYNRSSLLENS 1566
              N+ S++E+S
Sbjct: 781  LSNKPSMIEDS 791



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 142/327 (43%), Gaps = 32/327 (9%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKPGL 278
            L L++VQ G    A+V +  D+   ++   P+  G +   +L+++ G         + G 
Sbjct: 1012 LGLDSVQPGSTYLAFVNNHGDNCVWVNLS-PNVRGRVALMDLSDDVGQLQNVENRFRIGC 1070

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVT-KDLKGISIDLLVPGMMVSTRVQSILENGV 337
             L+  V+S+D +   + L++  +  S+  T  DLK         GM++  RV    E  V
Sbjct: 1071 ALRVKVKSVDVSANRLDLTARHNESSEVKTLNDLKA--------GMVIPARVTKTTERLV 1122

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY-LL 396
             +      +G V +  L + F   N    YN++  V A +L VD  ++ + L+L P  +L
Sbjct: 1123 NVQITDTISGVVPLAELSDDFEQAN-PAQYNKNDIVRACVLAVDVPNKKIFLSLRPSKVL 1181

Query: 397  HNRAPPSHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEE 449
             +  P +  +V D     KV  + RG        G+ + + +T     A V ISD+++  
Sbjct: 1182 SSSLPTTDAQVSDT-GSLKVGNIVRGFIKHVTDKGVFVSLGAT---VDALVRISDLSDRF 1237

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV---FTHSDVKPGMVVKGKV 506
            V+  +  ++    V+ RI+   H        LK S  +G         D+K G  V G+V
Sbjct: 1238 VKDWKSLHEIDQLVKGRIMSVDHATKQVQMSLKQSHVDGNYTPPLNIGDIKAGDTVTGRV 1297

Query: 507  IAVDSFGAIVQFPGGVKALCPLPHMSE 533
              V+ FGA V        L  L H SE
Sbjct: 1298 RKVEDFGAFVDIENTQPRLSGLCHRSE 1324



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 138/321 (42%), Gaps = 50/321 (15%)

Query: 542  KFKVGAELVFRV--LGVKSKRITVTHK-------KTL--VKSKLAILSSYAEATDRLITH 590
            +F++G  L  +V  + V + R+ +T +       KTL  +K+ + I +   + T+RL+  
Sbjct: 1065 RFRIGCALRVKVKSVDVSANRLDLTARHNESSEVKTLNDLKAGMVIPARVTKTTERLVN- 1123

Query: 591  GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----------RI 640
                        V+  + + G  P +EL  D      + Y+   +V+           +I
Sbjct: 1124 ------------VQITDTISGVVPLAELSDDFEQANPAQYNKNDIVRACVLAVDVPNKKI 1171

Query: 641  MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
              S+  S+ ++ S      +VS+   +K+G++V G +  VT   V V + A       + 
Sbjct: 1172 FLSLRPSKVLSSSLPTTDAQVSDTGSLKVGNIVRGFIKHVTDKGVFVSLGA--TVDALVR 1229

Query: 701  TEHLADHLEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYSLINSAQQLPSD 755
               L+D        KS+    +E DQL     + +D+ +  + +S K S ++     P +
Sbjct: 1230 ISDLSDRF--VKDWKSL----HEIDQLVKGRIMSVDHATKQVQMSLKQSHVDGNYTPPLN 1283

Query: 756  ASHIHPNSVVHGYVCNIIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
               I     V G V  + + G FV       RL+G   RS+    +  D+ K Y  G  V
Sbjct: 1284 IGDIKAGDTVTGRVRKVEDFGAFVDIENTQPRLSGLCHRSEVAARRVEDVRKLYSTGDVV 1343

Query: 813  RSNILDVNSETGRITLSLKQS 833
            ++ +L V+ E  +I+L LK S
Sbjct: 1344 KAKVLSVDVENRKISLGLKAS 1364



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 106/495 (21%), Positives = 198/495 (40%), Gaps = 80/495 (16%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM--SEFEI---VKPGKKFKVGAE 548
            +++  G VVK ++ ++ +    V+    V+    +     S  EI     P +KFK    
Sbjct: 907  AEITLGRVVKARIASIKATQMNVRLADNVQGRVDVSEAFDSWDEINNKAAPLQKFKHNDL 966

Query: 549  LVFRVLGVKSKR----ITVTHKKTLVKS-KLAILSSYAEATDRLI--------THGWITK 595
            +  +VLG+   R    + ++H++  V   +L+   S  EA D  +           ++  
Sbjct: 967  IDVKVLGIHDARNHRFLPISHRQGKVPVFELSAKKSRVEAGDEALLGLDSVQPGSTYLAF 1026

Query: 596  IEKHG--C-FVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVKCRIMSSIPASRRI 650
            +  HG  C +V     V+G     +L  D G      + + +G  ++ ++ S   ++ R+
Sbjct: 1027 VNNHGDNCVWVNLSPNVRGRVALMDLSDDVGQLQNVENRFRIGCALRVKVKSVDVSANRL 1086

Query: 651  NLSFMMKPTRVSEDDLVK-LGSLVSGVV---DVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            +L+      R +E   VK L  L +G+V    V      +V V       G +P   L+D
Sbjct: 1087 DLT-----ARHNESSEVKTLNDLKAGMVIPARVTKTTERLVNVQITDTISGVVPLAELSD 1141

Query: 707  HLEHATVMK----SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP------SDA 756
              E A   +     +++       +L +D  +  + LS + S + S+  LP      SD 
Sbjct: 1142 DFEQANPAQYNKNDIVRAC-----VLAVDVPNKKIFLSLRPSKVLSSS-LPTTDAQVSDT 1195

Query: 757  SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
              +   ++V G++ ++ + G FV     +      S   D    D    + + Q V+  I
Sbjct: 1196 GSLKVGNIVRGFIKHVTDKGVFVSLGATVDALVRISDLSDRFVKDWKSLHEIDQLVKGRI 1255

Query: 817  LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
            + V+  T ++ +SLKQS     D ++               +   N  ++K       G 
Sbjct: 1256 MSVDHATKQVQMSLKQS---HVDGNY---------------TPPLNIGDIK------AGD 1291

Query: 877  VIEGKVHESNDFGVVVSFEE-HSDVYGFITHHQLAGATVE-------SGSVIQAAILDVA 928
             + G+V +  DFG  V  E     + G     ++A   VE       +G V++A +L V 
Sbjct: 1292 TVTGRVRKVEDFGAFVDIENTQPRLSGLCHRSEVAARRVEDVRKLYSTGDVVKAKVLSVD 1351

Query: 929  KAERLVDLSLKTVFI 943
               R + L LK  + 
Sbjct: 1352 VENRKISLGLKASYF 1366



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 115/514 (22%), Positives = 203/514 (39%), Gaps = 85/514 (16%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN------------ 1110
            VGS V   +T I   ++ L       G   I  +++  ++ +E L ++            
Sbjct: 143  VGSSVLGRVTAITGRDIALALPNNLTGFAPILSISERLTSRIERLLASDEKPEDEEDEDV 202

Query: 1111 -----FKIGQTVTARIIAKSNKP-DMKKSFLW-ELSIKPSMLTVSEIGSKLLFEECDVSI 1163
                 F +GQ + A I A   +P D  KS    ELS+ P+ +  +         E +V  
Sbjct: 203  DLKQLFYVGQWLRASITATGTEPKDGSKSKKHIELSLDPAAVNGA-------LREENVVT 255

Query: 1164 GQRVTGYVYKVDNEWALLTI-----SRHLKAQLFILDSAYEPSELQEFQRRFHI--GKAV 1216
               +   V  V++   ++ I     S    A    L SAY   ++QE Q    +  GKA 
Sbjct: 256  NSTIQAAVRSVEDHGIVMDIGLSESSVKGFASKKALGSAYSLDQIQEGQVLLCLVTGKAS 315

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
            +G V+++  +     +  R  +D           D M  F+ E   V   +    + V  
Sbjct: 316  SGKVVNLTPDPSKFSVATREGKD----------KDKM-PFVAEAPTVDAFLPG--TAVDV 362

Query: 1277 LVVQIGPH-LYGRVH-FTELKNICVSDPLSGY-DEGQFVKCKVLEISRTVRGTFHVELSL 1333
            L+ + GP  + G++    ++ +  V    S + D  Q  +      +R +   F +    
Sbjct: 363  LITETGPKGIAGKIMGMLDVTSDVVHSAASQFPDMNQKYRVGSKAKARII---FSIPQD- 418

Query: 1334 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1393
                DG   T S   +T++  P      +ED     IV         +G F+ L+    A
Sbjct: 419  ----DGARKTKSE--ATELSQPLALSSTLEDAKVTSIV-------ADRGIFLELTDGKKA 465

Query: 1394 KVLLSNLSDGYVES-----PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
               +S LSD  V+S     P K     K+   R+ +  P+     V+LK    ++     
Sbjct: 466  FAHISQLSDSKVDSISTAGPYKPESTHKV---RITAYNPVDNIYYVSLK----KSVLDQP 518

Query: 1449 INNLSNLHVGDIVIGQIKRV------ESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1502
               L +L +G +V G + ++         G+ + + ++ + GL     LS+ H+ + E  
Sbjct: 519  FLRLEDLPIGGVVTGTVDKLILGGKSGVTGVLVKLSDS-ITGLVPEMHLSDAHLTHPERK 577

Query: 1503 YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
            +R G  +K +IL VD EKR + + +K S   + A
Sbjct: 578  FREGYPIKGRILSVDTEKRHVRVTLKKSLVDDSA 611


>gi|392578567|gb|EIW71695.1| hypothetical protein TREMEDRAFT_27162 [Tremella mesenterica DSM 1558]
          Length = 1475

 Score =  334 bits (856), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 334/1240 (26%), Positives = 565/1240 (45%), Gaps = 171/1240 (13%)

Query: 744  SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS 803
            +L+ S Q+  S+   + P  +V   +  ++ +G  V+  G   G    +    G  +D+ 
Sbjct: 329  TLVRSEQKAVSEVGSLLPGHLVIALITAVVPSGLNVKISGFYDGTIEVAHLPLGD-SDID 387

Query: 804  KTYYVGQSVRSNIL-DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ-SSKH 861
              Y VG+ V++ ++ + NS   R                    HF L     ++  SS  
Sbjct: 388  DKYKVGKKVQARVIYEANSHDPR--------------------HFSLSALPHIITFSSPT 427

Query: 862  NGSELKWVEGFIIGSVIEG--KVHESNDFGVVVSFEEHSDVYGFITH------HQLAGAT 913
              + +   +G  IG V +    V    ++GV+   ++  D +  I+H        L   T
Sbjct: 428  TKTGIPLEQGVEIGRVFDSLKVVRIIPEWGVICRTDDGLDGFVHISHLSDERLPALNSGT 487

Query: 914  VE--SGSVIQAAILDVAKAERLVDLSLKTVFIDR-FREANSNRQAQKKKRKREASKDLGV 970
             E  +G+V +  ++  +  + ++  S +   I++ F + N  +  Q  K   +   D  +
Sbjct: 488  AEFRAGTVHRGRVIGHSPLDGVLLFSFERKIINQVFMQVNELQVGQVLKGTIQRLTDQML 547

Query: 971  HQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP 1029
               +N  V+ IV+              + YA +      K P+K+F  G +V A V +L 
Sbjct: 548  FVNINGSVDGIVR-------------PLHYADI----VLKHPEKRFRPGSTVRARVFSLD 590

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV---------GSLVQAEITEIKPLELR 1080
             +    R++L LK           R    S  D+         G L+ A I++I    L 
Sbjct: 591  PARN--RVVLTLK-----------RTLIDSPLDIPTKFENVRKGQLIPAVISKI----LD 633

Query: 1081 LKFGIGFHGRIHITEVNDDKSN-VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1139
                +   G +       + S  VV N+   F IG+ V  R+I  +  P+ ++ F+   S
Sbjct: 634  KGCLVDLFGDMKAFLPQSEASEAVVANIAEIFYIGKPVNVRVIDLT--PESQRIFV---S 688

Query: 1140 IKPSML-TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            ++ +    VSE+          V +G+ V G   ++     L+T++      L  L S  
Sbjct: 689  VRQAKFDPVSEV---------PVKVGEIVNGIATEIHPAQILVTLTPSRHPALLSLRSLA 739

Query: 1199 EPSEL--QEFQRRFHIGKAVTG-HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM-- 1253
               ++   E +    +G+ V G  V+S N    LL +       G+    V +SN     
Sbjct: 740  IQRKMTDDELRSNLKVGEKVDGLRVVSKNPTTGLLIVAYTTRGGGV----VSVSNTTAAL 795

Query: 1254 -QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN----ICVSD-PLSGYD 1307
             ++ I  G I+ GR++       G ++Q+G  + G VH  +  +    I   D PL    
Sbjct: 796  EESDIQPGQIISGRVASYTPV--GTIIQLGHSVRGVVHPCDASDDFAEIAEGDGPLR--- 850

Query: 1308 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1367
             G+ +K  VL I    +    V+LS R S          D +T+   P   +E++ +L  
Sbjct: 851  VGEEIKAYVLAIDPISKA---VQLSTRVS------RAHPDQATESIDP--EVERVGELQS 899

Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1427
               ++G VK+V + G F+ L R + A+V++  L D +V+  E  F + +LV+G++LSV+ 
Sbjct: 900  GQSIRGLVKHVAAHGLFVALGRTVTARVMIRELFDDFVKEWESHFHVNQLVSGKILSVDE 959

Query: 1428 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
               +VE+TL+   +    +     LS+   G  VI  +KRVE YG+F+ IE + + GLCH
Sbjct: 960  QRNQVEMTLRQDSTVRHKREAQFGLSDFKEGQKVIAVVKRVERYGMFLRIEGSGVSGLCH 1019

Query: 1488 VSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1544
             SE+S     ++      +R G+KVK  I+ V++E  +I  G+K+SYF ND D +  S  
Sbjct: 1020 KSEVSHSSRSDVSEALLGFRPGDKVKAMIVSVNRESGKIDFGIKASYF-NDDDFMGPSG- 1077

Query: 1545 EESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLE------ 1598
                      GS +  ++         D + ESE+ G +     +    V   E      
Sbjct: 1078 ---------TGSMSAPAMTHGG-----DAESESEEDGLMDEDGDDEDLDVHEAEGSEEHI 1123

Query: 1599 -----VNLDDEQPD------MDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEE----REQ 1643
                 V  DD +P           +  + G     +      +  +     E+    R +
Sbjct: 1124 DVDESVEEDDPKPSPTKANVAPTALRVSAGFDWSGRAPSPVPSSSSSSASDEDLPSSRSK 1183

Query: 1644 EIRAAEERLLEKDA---PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1700
              +A  + L    A   P +  EFER + +SPNSSF+WI+YM+F L + +V+KAR I   
Sbjct: 1184 FKKAVADDLTSTSADNQPSSSAEFERALFASPNSSFLWIQYMSFQLQLHEVDKARRIGRE 1243

Query: 1701 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1760
            AL+ I  REE EKLN+W+A  NLE  +G   EE+  KVF++A+QY D + V++       
Sbjct: 1244 ALEKITYREEGEKLNVWMALINLELGFGT--EESTEKVFKKAVQYNDARTVYIRYAEALT 1301

Query: 1761 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIK 1819
                 ++ +E+  K +KKF    + W +     L K      +A++ RA+ SL   KH++
Sbjct: 1302 AAADMQMTEEIHKKTVKKFGAFPESWTKFASYYLAKGDTASARALLPRAMKSLESSKHLE 1361

Query: 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879
             I + A+LEFK+G A+RG+++FEG+L  YPK+ DLWS+Y+DQ  ++ D+  +R  F+RA+
Sbjct: 1362 MIEKMAVLEFKHGDAERGKTLFEGLLERYPKKLDLWSVYIDQLAKVNDIQAVRTAFDRAL 1421

Query: 1880 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
               L   K KFLFKK+L  E  +G+ +  E  K++A E+V
Sbjct: 1422 DRKLNSTKAKFLFKKWLNIEMRIGDVKGQEKAKERAREWV 1461



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 186/856 (21%), Positives = 359/856 (41%), Gaps = 94/856 (10%)

Query: 54  FPRGGGHSLT--------QRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
           FPRGGG +LT        Q  R E  AEV AE   +   + + +  +      K N    
Sbjct: 55  FPRGGGTTLTALELKQTLQEGRREADAEVQAEVCQISFCIGQASDTQSSTAAVKRN---- 110

Query: 106 DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LAR 162
                 G  +S +  +   +++ K ++ GM++   +  V    L++ LP  L     +  
Sbjct: 111 ------GHQVSERQIKL-EELSYKRLTEGMRILTRIHTVLPLHLIVSLPNNLLAHVPITE 163

Query: 163 AADALDPILDNEIEANEDNL------------LPTIFHVGQLVSCIVL------------ 198
            +  L  +L  E EA   +             L ++F  GQ     VL            
Sbjct: 164 ISTTLTRLLSAE-EAMSVSEDEEEEDSSSAPDLGSLFTPGQYFPAKVLTVFPTASQSFAS 222

Query: 199 QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-- 256
           Q    +      ++ ++L    +   ++   +  G  +T  V S ED G+ + F   S  
Sbjct: 223 QYPPSETTRLAARVEMTLVPEKVNSDVASVDLSPGYAVTGEVISEEDKGWRVKFVAESSD 282

Query: 257 --FTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 314
               G+L +   AE +   +  G LL   + +     +VV LS D  T+   V  + K +
Sbjct: 283 NVVEGWLSKAE-AEKNNFHIVVGQLLPCTISASSAGGRVVQLSLDHQTL---VRSEQKAV 338

Query: 315 S-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
           S +  L+PG +V   + +++ +G+ +    ++ GT+++ HL      ++  + Y   KKV
Sbjct: 339 SEVGSLLPGHLVIALITAVVPSGLNVKISGFYDGTIEVAHL--PLGDSDIDDKYKVGKKV 396

Query: 374 NARILFV----DPTSRAVGLTLNPYLLHNRAPPSH--------VKVGDIYDQSKVVRVDR 421
            AR+++     DP  R   L+  P+++   +P +         V++G ++D  KVVR+  
Sbjct: 397 QARVIYEANSHDP--RHFSLSALPHIITFSSPTTKTGIPLEQGVEIGRVFDSLKVVRIIP 454

Query: 422 GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLAT 478
             G+   I  T      +V IS +++E +  L     +++ G+  R R++G   L+G+  
Sbjct: 455 EWGV---ICRTDDGLDGFVHISHLSDERLPALNSGTAEFRAGTVHRGRVIGHSPLDGVLL 511

Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
              +      +    ++++ G V+KG +  +      V   G V  +    H ++  +  
Sbjct: 512 FSFERKIINQVFMQVNELQVGQVLKGTIQRLTDQMLFVNINGSVDGIVRPLHYADIVLKH 571

Query: 539 PGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P K+F+ G+ +  RV  +     R+ +T K+TL+ S L I + +       +    I+KI
Sbjct: 572 PEKRFRPGSTVRARVFSLDPARNRVVLTLKRTLIDSPLDIPTKFENVRKGQLIPAVISKI 631

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
              GC V  +  ++ F P+SE         + ++++G+ V  R++   P S+RI +S   
Sbjct: 632 LDKGCLVDLFGDMKAFLPQSEASEAVVANIAEIFYIGKPVNVRVIDLTPESQRIFVSVRQ 691

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMK 715
                  +  VK+G +V+G+   + P  ++V +    +    +    LA   +     ++
Sbjct: 692 AKFDPVSEVPVKVGEIVNGIATEIHPAQILVTLTPSRH-PALLSLRSLAIQRKMTDDELR 750

Query: 716 SVIKPGYEFDQLLVLDNESSNLLLSAKY--------SLINSAQQLPSDASHIHPNSVVHG 767
           S +K G + D L V+    +  LL   Y        S+ N+   L  + S I P  ++ G
Sbjct: 751 SNLKVGEKVDGLRVVSKNPTTGLLIVAYTTRGGGVVSVSNTTAAL--EESDIQPGQIISG 808

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVD--GQRADLSKTYYVGQSVRSNILDVNSETGR 825
            V +    G  ++    + G      A D   + A+      VG+ +++ +L ++  +  
Sbjct: 809 RVASYTPVGTIIQLGHSVRGVVHPCDASDDFAEIAEGDGPLRVGEEIKAYVLAIDPISKA 868

Query: 826 ITLSLKQSCCSSTDAS 841
           + LS + S      A+
Sbjct: 869 VQLSTRVSRAHPDQAT 884


>gi|340381756|ref|XP_003389387.1| PREDICTED: protein RRP5 homolog [Amphimedon queenslandica]
          Length = 1804

 Score =  330 bits (845), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 377/1437 (26%), Positives = 630/1437 (43%), Gaps = 154/1437 (10%)

Query: 54   FPRGGGHSLTQRERDEI--HAEVDAEF----------EAVERGLHKKNKKKKKKTERKAN 101
            FPRGG   +T  ER +I   AE D  F          EA    L  +  K KKKTE K  
Sbjct: 48   FPRGGKELITPLERRKIIHQAEHDDIFGKKSDLLEKNEAAAMLLSDEGVKNKKKTEIK-- 105

Query: 102  ETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA 161
            E V ++          K+P   +++  KN+  G+ +   + EV +  L++ LP  + G  
Sbjct: 106  EPVKNI----------KVP---DRLYHKNLKEGLLILCAIKEVQQYRLLMSLPFNMTGSV 152

Query: 162  RAADALDPI--LDN------EIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIW 213
               D  DP+  L N      E +A +   L  ++ VGQL+SC VL+++D +K++      
Sbjct: 153  NIGDVSDPLSSLINTGGEGEEFDAKKVPDLSKMYRVGQLLSCYVLKVNDSEKQV-----Q 207

Query: 214  LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID 273
            LS+   L+   L+ + +   M+++  V SIEDHGYI+ FG+   T FL    L +NSG +
Sbjct: 208  LSINPKLINNQLTAKNLIPNMIVSGCVTSIEDHGYIIDFGVSDRTEFL----LNKNSGSE 263

Query: 274  VKPGLLLQGVVRSI---DRTRKVVYLSSDPDTV-SKCVTKDLKGISIDLLVPGMMVSTRV 329
                L +  VV ++     T + + LS  PD + S  +++    +++  ++PG +++  V
Sbjct: 264  ---SLYIGQVVSTLILPGPTARALPLSIAPDILYSSILSQSSSAVTLPSILPGQLLNVSV 320

Query: 330  QSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 389
            +      +++SFL  F G V   HL    P T+   DY  +KK+ AR+L++D  ++ +GL
Sbjct: 321  KQTTPTSLIVSFLGGFEGYVHYQHLPT--PGTSL-TDYAINKKLKARVLWLDTNNKKIGL 377

Query: 390  TLNPYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 448
            TL   ++       S +++G I  ++ V RV+   G++L +P+    + AY  +  +  E
Sbjct: 378  TLQNEIIKGTGYDFSGMEIGLILHEAIVTRVESRHGVILKLPN---GSFAYSPVRLMYSE 434

Query: 449  EVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
               K+ KK+  GS   VRI+ + +++GLA   +K +  E   FT +DV PG ++KG V  
Sbjct: 435  RTDKISKKHCVGSVHSVRIVQYNYIDGLAIVSMKENTLEEEYFTINDVTPGSIIKGNVTK 494

Query: 509  VDSFGAIVQFPGGVKALCPLPHMSE-FEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTH 565
            +   G  V     +   CPL  +S+   + K  KK   GA +  RVL V +    I +T 
Sbjct: 495  ISDKGISVSINNRLNGFCPLSQLSDSAHLKKTLKKLSEGAAVKCRVLKVDTDNNFILLTK 554

Query: 566  KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG-- 623
            KK++V   L  L+            G I  I   G  +RFYN + GF P  EL       
Sbjct: 555  KKSIVSCDLPPLTDVRTVKPGEEYTGEIINIVDKGLIIRFYNNITGFLPNVELSSTSTQV 614

Query: 624  -CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP 682
               PS  + +GQV++ R++S    + ++ LS   +    +E    + G L+   V  V  
Sbjct: 615  ILSPSQFFKIGQVLQTRVLSVDIDNNKVRLSLRKQAPPTTESQ-AQPGDLLECEVTGVAG 673

Query: 683  NAV-------VVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESS 735
            N V       ++++     S       HL  +       KS     Y    +LVL   +S
Sbjct: 674  NGVSLLCNDELIFIPTPCLSDYAPLNGHLLAYHGRMLSDKSDRNEKYIISNVLVLSGATS 733

Query: 736  NLLLSAKYSLINS-------AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
               +S     I          ++ P     +H   V+ G V  I   G F+ F   L G 
Sbjct: 734  ---VSPAVGCIKKLIIDDLLKEKYPKTFEELHVGMVLVGVVKRIYSYGVFIEFPNGLVGL 790

Query: 789  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 848
            AP     D    D +  Y   Q+V + + ++N     IT+SLK   CS    S      L
Sbjct: 791  APLKYLSDEYITDTNGVYGERQTVFAKVHELNEVRKNITISLK---CSDLKLSLTHSLPL 847

Query: 849  LEEKIAMLQSSKHNGSELKWVEGFII---GSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 905
            ++  +    ++     +L +  G +    G++++G+++  ++    V+ E      G+++
Sbjct: 848  VQSIVLKQFANLLKEKDLIFSNGVVYYRPGTLVKGQINNISNSLFHVTLESGPSATGYVS 907

Query: 906  HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 965
                 G  V  G  +   ++DV        +SL +  +         ++ +K+K+ + AS
Sbjct: 908  --MATGGGVCPGDHVTCCVIDVDMETGNYWVSLNSKVM-----KERGKEEEKQKKGKTAS 960

Query: 966  KDLGVH------QTVNAIVEIVKENYLVLSLPEYNHSI---GYASVSDYNTQKFPQKQFL 1016
             D+  +       TV   +E +   YL+ S+   N S+   G      +    +  K   
Sbjct: 961  GDINSYFKLEAGHTVTGHIEYINNYYLICSVSTLNQSVLAYGLFDSGQWGVIPYQLKHLK 1020

Query: 1017 NGQSVIATVM---ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
             G  V  TV+   +L +   +G  + LL    E+ + S K   ++ S  +G +V A+I +
Sbjct: 1021 PGAKVNGTVLQSSSLFNGKMSGPPIFLL---GESNSLSQKIVAQQLSVTIGDIVDAKIIK 1077

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            I   +L + FG  + GRIH T + DD       L S F +G  + A+I+    +      
Sbjct: 1078 ISDSQLSVSFG-PWKGRIHSTLLADDMEKGSYPL-SKFSVGDVMKAKILKYRKRAGH--- 1132

Query: 1134 FLWELSIKPSMLTVSEIGSKLLFE------ECDVSIGQRVTGYVYKVDNEWALLTISRHL 1187
                 S+KP  +       K LF+      E   + G +  G V +V     L+ I+  +
Sbjct: 1133 -----SVKPGTVHFELTTRKSLFDAEKAKIESSFTTGDKRMGVVREVTKSRLLVDITPEV 1187

Query: 1188 KAQLFIL---DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             A +  L    +  E   L +  + F++G+ V   V                  D I   
Sbjct: 1188 SAVICPLLAGSNVNEDGNLLKLTKCFNVGEVVECTV-----------------GDCIEKG 1230

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
                S       I+ GD V GR++ +     GLV+ I  +L G V+ T + +  V  PL 
Sbjct: 1231 QYHGSLTGSLPVINIGDTVCGRVTDV--QYSGLVLSINHYLNGIVYLTNISDYYVPRPLQ 1288

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
             ++ G  + C V  I +T +      LSLR S  G++   +     D   P K +  I D
Sbjct: 1289 YFNIGDKLSCVV--IGKTSK---QFNLSLRKSHTGIN-IPTLPAQPDGSEPDKEINNIAD 1342

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
            L    +V+GYV +VT  G F+ L   +  +V+L NLSD YV++ E    +G LV  +
Sbjct: 1343 LQEVGVVRGYVSSVTKYGIFVKLGPDVVGRVMLKNLSDQYVQNYESCVNVGDLVRAK 1399



 Score =  263 bits (672), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 180/573 (31%), Positives = 313/573 (54%), Gaps = 49/573 (8%)

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            V G V +V   G  + ++  L+  V L+N+SD YV  P + F IG  ++  V+     SK
Sbjct: 1249 VCGRVTDVQYSGLVLSINHYLNGIVYLTNISDYYVPRPLQYFNIGDKLSCVVIG--KTSK 1306

Query: 1431 RVEVTLKTSDSR------------TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1478
            +  ++L+ S +             +    EINN+++L    +V G +  V  YG+F+ + 
Sbjct: 1307 QFNLSLRKSHTGINIPTLPAQPDGSEPDKEINNIADLQEVGVVRGYVSSVTKYGIFVKL- 1365

Query: 1479 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1538
              ++VG   +  LS+ +V N E+    G+ V+ K+++ + ++            K  A  
Sbjct: 1366 GPDVVGRVMLKNLSDQYVQNYESCVNVGDLVRAKVVEFEVQEVEGVATKGKEKKKKYAIG 1425

Query: 1539 LQMS---------SEEESD----EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL 1585
            +            SE ESD    + IEE     + S+LE++    +   +E ++      
Sbjct: 1426 IDEEEEEEELVEMSEGESDTMDQQEIEE-----KESVLEDTKRLKKKRKLEDKE------ 1474

Query: 1586 AQIESRASVPPLEVNLD-DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE 1644
               E   S+ PL V    D  P  D    ++   T+E   I +K ++  KK  K+  E +
Sbjct: 1475 ---EDSCSMTPLPVTGGWDYNPSNDTIEERDDEDTNEV--ISKKKSKRQKKAIKKAEELQ 1529

Query: 1645 IRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            +   E  L++    P++ D+F+RL+ ++PNSS +W++YMAF L  A+V+KAR+ AER L 
Sbjct: 1530 LYKREHSLMDTSRLPQSADDFDRLLVANPNSSSLWLQYMAFYLHTAEVDKARATAERGLA 1589

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
             I+ REE+EKLN+WV + NLEN YG+   E++ +VF+RALQ  D  +++  L+ +Y  + 
Sbjct: 1590 AISFREEDEKLNLWVGFLNLENMYGD--SESLDQVFKRALQQNDQFEIYTRLIDIYVTSN 1647

Query: 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFIS 1822
            + + AD+L   M KKF  + +VW +  + L++Q +  + + ++QR+  SL + +H+    
Sbjct: 1648 KPEYADQLYQIMCKKFSSNIQVWSQYGRFLMEQGKADLARKILQRSFKSLTKKQHVDITK 1707

Query: 1823 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882
            Q A  EFK G  +RG ++FE ++S YP++ D+WS+Y+D   + G++D +R +FERA+SL 
Sbjct: 1708 QFAQFEFKYGEMERGCTLFENLVSSYPRKVDIWSVYIDMLTKKGEMDRVRDVFERAVSLK 1767

Query: 1883 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915
            L   K +FL+K+Y+E+E+  G +  +E V+ K+
Sbjct: 1768 LSSVKKQFLYKRYIEFERKHGTQSLVETVQAKS 1800



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
            LHVG +++G +KR+ SYG+FI   N  LVGL  +  LS++++ +   +Y   + V  K+ 
Sbjct: 761  LHVGMVLVGVVKRIYSYGVFIEFPN-GLVGLAPLKYLSDEYITDTNGVYGERQTVFAKVH 819

Query: 1515 KVDKEKRRISLGMKSSYFK 1533
            ++++ ++ I++ +K S  K
Sbjct: 820  ELNEVRKNITISLKCSDLK 838



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 163/402 (40%), Gaps = 64/402 (15%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII- 1122
            G L+   + +  P  L + F  GF G +H   +    +++     +++ I + + AR++ 
Sbjct: 313  GQLLNVSVKQTTPTSLIVSFLGGFEGYVHYQHLPTPGTSL-----TDYAINKKLKARVLW 367

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
              +N   +  +   E+ IK +    S +   L+  E  V+  +   G + K+ N      
Sbjct: 368  LDTNNKKIGLTLQNEI-IKGTGYDFSGMEIGLILHEAIVTRVESRHGVILKLPNG----- 421

Query: 1183 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA-VTGHVLSINKEKKLLRLVLRPFQDGI 1241
                          AY P  L   +R   I K    G V S+       R+V   + DG+
Sbjct: 422  ------------SFAYSPVRLMYSERTDKISKKHCVGSVHSV-------RIVQYNYIDGL 462

Query: 1242 SDKTVDISNDNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
            +  ++  +    + F    +  G I+ G ++KI     G+ V I   L G    ++L + 
Sbjct: 463  AIVSMKENTLEEEYFTINDVTPGSIIKGNVTKISDK--GISVSINNRLNGFCPLSQLSDS 520

Query: 1298 C-VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS--TDVDT 1354
              +   L    EG  VKC+VL++       F +       L    S  S DL   TDV T
Sbjct: 521  AHLKKTLKKLSEGAAVKCRVLKVD--TDNNFIL-------LTKKKSIVSCDLPPLTDVRT 571

Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA---KVLLSNLSDGYVESPEKE 1411
                      + P     G + N+  KG  I     +      V LS+ S   + SP + 
Sbjct: 572  ----------VKPGEEYTGEIINIVDKGLIIRFYNNITGFLPNVELSSTSTQVILSPSQF 621

Query: 1412 FPIGKLVAGRVLSVEPLSKRVEVTL-KTSDSRTASQSEINNL 1452
            F IG+++  RVLSV+  + +V ++L K +   T SQ++  +L
Sbjct: 622  FKIGQVLQTRVLSVDIDNNKVRLSLRKQAPPTTESQAQPGDL 663


>gi|154274011|ref|XP_001537857.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415465|gb|EDN10818.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 566

 Score =  325 bits (833), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 198/564 (35%), Positives = 319/564 (56%), Gaps = 52/564 (9%)

Query: 1358 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1417
             +  I  +  N IV+G+V+ V   G F+ L   + A V +S+LSD Y++  + EF + +L
Sbjct: 17   EISSISQIKVNDIVRGFVRRVADNGLFVTLGHNVIAYVRISDLSDSYLKEWQNEFQVNQL 76

Query: 1418 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1477
            V GRV+  +  S +++++LK S      ++ I  + +L  G  V G+++ VE +G FI I
Sbjct: 77   VRGRVILADAESNKLQMSLKESVLDPNYKTPIT-IKDLKRGQTVTGKVRNVEEFGAFIVI 135

Query: 1478 ENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
            + T NL GLCH +E++E  V++   ++  G+ VK KI+K+D  K RISLG+K+SYFK+  
Sbjct: 136  DGTANLSGLCHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYFKD-- 193

Query: 1537 DNLQMSSEEESD-EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVP 1595
                  S++ESD E ++       S   ++      DMD+E E G  + +  ++   ++ 
Sbjct: 194  ------SDDESDGENVQGESEEIVSESEDDG-----DMDLELESGNDISMGGVDLEDTM- 241

Query: 1596 PLEVNLDDEQPDMDNGISQNQGHTDEAKT-------IDEKNNRHAKKKEKEERE------ 1642
                N D+ + D  +G  Q  G  D   T        D   N      E  E +      
Sbjct: 242  ----NGDNSESDSSDGDVQMTGTKDAGITGGLVTSGFDWNGNNTIGSDEDNESDSDSDNK 297

Query: 1643 ----------QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVE 1692
                      QEI+      L+ + P++  ++ERL+   PNSSF+W+KYMAF L +++V+
Sbjct: 298  AAVKKKKRRKQEIQVDRTGDLDTNGPQSVADYERLLLGEPNSSFLWLKYMAFQLELSEVD 357

Query: 1693 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVH 1752
            KAR IAERAL++I+I ++ EK NIWVA  NLEN +GN  ++ +  VF+RA QY DP+++H
Sbjct: 358  KAREIAERALRSISIGQDTEKFNIWVAMLNLENTFGN--DDTLEDVFKRACQYNDPQEIH 415

Query: 1753 LALLGLYERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRAL 1809
              L  +Y ++ ++  ADEL   ++ KKF  S K++L     L     + E  +A++ RA+
Sbjct: 416  ERLTSIYIQSGKHDKADELFQAILKKKFTQSPKIYLNFATFLFDTLAEPERGRALLPRAI 475

Query: 1810 LSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1867
             SLP H H+   S+   LEF+  NG  +RGR++FEG++S +PKR DLW++ LD EI+ GD
Sbjct: 476  QSLPTHTHVDITSKFGQLEFRSPNGDVERGRTIFEGLISSFPKRVDLWNVLLDLEIKNGD 535

Query: 1868 VDLIRGLF-ERAISLSLPPKKMKF 1890
            ++ +RGLF +R     +P ++ + 
Sbjct: 536  MEQVRGLFLKRFWGWDIPLRRTRL 559



 Score = 45.1 bits (105), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 22/181 (12%)

Query: 403 SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS 461
           S +KV DI  +  V RV D GL + L       +  AYV ISD+++  +++ + +++   
Sbjct: 22  SQIKVNDIV-RGFVRRVADNGLFVTL-----GHNVIAYVRISDLSDSYLKEWQNEFQVNQ 75

Query: 462 CVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGMVVKGKVIAVDSFGA 514
            VR R++    L    +  L+ S  E ++        T  D+K G  V GKV  V+ FGA
Sbjct: 76  LVRGRVI----LADAESNKLQMSLKESVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGA 131

Query: 515 IVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 570
            +   G   +  LC    M+E ++    K F+ G  +  +++ +    +RI++  K +  
Sbjct: 132 FIVIDGTANLSGLCHRTEMAEGKVEDARKLFEKGDIVKAKIVKIDLNKERISLGLKASYF 191

Query: 571 K 571
           K
Sbjct: 192 K 192



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 17/164 (10%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            + +   V G+V +V +    +T+  ++ A + I D     S L+E+Q  F + + V G V
Sbjct: 24   IKVNDIVRGFVRRVADNGLFVTLGHNVIAYVRISD--LSDSYLKEWQNEFQVNQLVRGRV 81

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI-----HEGDIVGGRISKILSGVG 1275
            +  + E   L++ L+            + + N +T I       G  V G++  +     
Sbjct: 82   ILADAESNKLQMSLKE----------SVLDPNYKTPITIKDLKRGQTVTGKVRNVEEFGA 131

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
             +V+    +L G  H TE+    V D    +++G  VK K+++I
Sbjct: 132  FIVIDGTANLSGLCHRTEMAEGKVEDARKLFEKGDIVKAKIVKI 175


>gi|194374585|dbj|BAG57188.1| unnamed protein product [Homo sapiens]
          Length = 771

 Score =  324 bits (830), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 237/781 (30%), Positives = 398/781 (50%), Gaps = 55/781 (7%)

Query: 54  FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
           FPRGG   + + E+  +   E D  F+ + E G  K+ K +K   KT++   E  +    
Sbjct: 8   FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63

Query: 110 LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                 S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 64  ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117

Query: 169 PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                 NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175

Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
            + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 176 NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235

Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
           G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 236 GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
           + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 296 LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350

Query: 397 HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
               P + +    +G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 351 QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
            + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S+G
Sbjct: 408 PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
            +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL++
Sbjct: 468 MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527

Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
           SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +++
Sbjct: 528 SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587

Query: 632 VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
            GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V   T
Sbjct: 588 TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
            + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L      +LL  
Sbjct: 648 KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLRR 706

Query: 742 KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
           K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++      R
Sbjct: 707 KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMCSSCR 766

Query: 800 A 800
           +
Sbjct: 767 S 767



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 148/644 (22%), Positives = 258/644 (40%), Gaps = 111/644 (17%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVK-PGKKFKVGA 547
            V +   +KPGM++ G V +++  G +V     G +A  PL    E+   K  G K KVG 
Sbjct: 178  VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQ 237

Query: 548  ELVFRVLGVKSK----RITVTHKKTLVKSKLAILSSYAEATDR-----------LITHGW 592
             L   V  VK       ++V H +           S A AT++           L+    
Sbjct: 238  YLNCIVEKVKGNGGVVSLSVGHSEV----------STAIATEQQSWNLNNLLPGLVVKAQ 287

Query: 593  ITKIEKHGC---FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            + K+   G    F+ F+ GV  F     + LDP  + +  Y   Q V+  I+   P +R 
Sbjct: 288  VQKVTPFGLTLNFLTFFTGVVDF-----MHLDP--KKAGTYFSNQAVRACILCVHPRTRV 340

Query: 650  INLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            ++LS     ++P R     L +L     G        AV+  V  +G+ K    T  L D
Sbjct: 341  VHLSLRPIFLQPGR----PLTRLSCQNLG--------AVLDDVPVQGFFKKAGATFRLKD 388

Query: 707  ------HLEHATVMKSVI-----KPGYEFDQLLVLDNESSNL-LLSAKYSLINSAQQLPS 754
                   L H +  K+V      KPG      ++  ++   L LLS + S+I  AQ L  
Sbjct: 389  GVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIE-AQYL-- 445

Query: 755  DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
                I P +VV G V  I   G  V+   ++ G  P     D    +  K Y++G  V+ 
Sbjct: 446  RYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKC 505

Query: 815  NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874
             +L  + E  ++ ++LK++              L+E K+ ++         L+   GFII
Sbjct: 506  RVLLCDPEAKKLMMTLKKT--------------LIESKLPVITCYADAKPGLQ-THGFII 550

Query: 875  GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDV 927
                        D+G +V F  +++V G +  H+L+   +        +G V++  +L+ 
Sbjct: 551  ---------RVKDYGCIVKF--YNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNC 599

Query: 928  AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA-IVEIVKENYL 986
              ++  + LS K         ++   + +     ++  K + + Q V+  ++E  K+   
Sbjct: 600  EPSKERMLLSFKL-------SSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLE 652

Query: 987  VLSLPEYNHS-IGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045
            V  LP    + +  + +SD+         +L    ++  V+ L  S + GR+LL  K   
Sbjct: 653  VAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCL--SQSEGRVLLRRKPAL 710

Query: 1046 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 1089
             +     +  K  S    G L+   +  IK   + ++F  G  G
Sbjct: 711  VSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSG 754



 Score = 77.0 bits (188), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 149/326 (45%), Gaps = 46/326 (14%)

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
            +AV   +L ++   +++ L LRP           +S  N+   + +  + G     G   
Sbjct: 325  QAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATF 384

Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            ++  GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+      
Sbjct: 385  RLKDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL 432

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +
Sbjct: 433  ---LSLRTSI----------------IEAQYL-RYHDIEPGAVVKGTVLTIKSYGMLVKV 472

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S
Sbjct: 473  GEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLIES 528

Query: 1448 E---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            +   I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++ 
Sbjct: 529  KLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFY 587

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+ VKV +L  +  K R+ L  K S
Sbjct: 588  TGQVVKVVVLNCEPSKERMLLSFKLS 613



 Score = 44.7 bits (104), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 140/636 (22%), Positives = 232/636 (36%), Gaps = 118/636 (18%)

Query: 909  LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
            L+   ++ G ++   +  +     LVD+      +D  R      +AQ+  R++     L
Sbjct: 179  LSAEALKPGMLLTGTVSSLEDHGYLVDIG-----VDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 969  GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD---YNTQKFPQKQFLNGQSVIATV 1025
             V Q +N IVE VK N  V+SL     S+G++ VS       Q +     L G  V A V
Sbjct: 234  KVGQYLNCIVEKVKGNGGVVSL-----SVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQV 288

Query: 1026 MALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP--------- 1076
              +         L     + +      K+A    +Y     V+A I  + P         
Sbjct: 289  QKVTPFGLTLNFLTFFTGVVDFMHLDPKKA---GTYFSNQAVRACILCVHPRTRVVHLSL 345

Query: 1077 ------------------------------------LELRLKFGIGFHGRIHITEVNDDK 1100
                                                   RLK G+  + R+  + ++D K
Sbjct: 346  RPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARL--SHLSDSK 403

Query: 1101 SNVVENLFS--NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEE 1158
                 N+F+   FK G T   RII  S   +     L  LS++ S++    +        
Sbjct: 404  -----NVFNPEAFKPGNTHKCRIIDYSQMDE-----LALLSLRTSIIEAQYLRYH----- 448

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-----QRRFHIG 1213
             D+  G  V G V  + +   L+ +   ++  +        P  L +      ++++HIG
Sbjct: 449  -DIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLV-------PPMHLADILMKNPEKKYHIG 500

Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSG 1273
              V   VL  + E K L + L+          +    D        G I+  R+      
Sbjct: 501  DEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFII--RVKDY--- 555

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1333
              G +V+   ++ G V   EL    + DP   +  GQ VK  VL          + E S 
Sbjct: 556  --GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVL----------NCEPSK 603

Query: 1334 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLD 1392
               L  +S   SSD     +  G   +K + ++   +V   V   T  G  + +L   + 
Sbjct: 604  ERML--LSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIR 661

Query: 1393 AKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE-I 1449
            A +  S+LSD     P        G ++  RVL +     RV +  K +   T    +  
Sbjct: 662  AFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGRVLLRRKPALVSTVEGGQDP 720

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
             N S +H G ++IG +K ++ YG+FI    + L GL
Sbjct: 721  KNFSEIHPGMLLIGFVKSIKDYGVFIQFP-SGLSGL 755


>gi|169844731|ref|XP_001829086.1| U3 snoRNP-associated protein Rrp5 [Coprinopsis cinerea okayama7#130]
 gi|116509826|gb|EAU92721.1| U3 snoRNP-associated protein Rrp5 [Coprinopsis cinerea okayama7#130]
          Length = 1462

 Score =  322 bits (825), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 209/598 (34%), Positives = 329/598 (55%), Gaps = 36/598 (6%)

Query: 1353 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1412
            D   + + ++ DL     V+G+VKN+ ++G F+ + R +DA+V +  L D YV+  +  F
Sbjct: 870  DVTDREISELSDLQVGDTVRGFVKNIANQGLFVTIGRGIDARVQIRELFDEYVKDWKPRF 929

Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1472
               +LV GRVLS++  + +VE+T K+ D     +S  + +     G  + G IKR+E YG
Sbjct: 930  KERQLVKGRVLSIDVDNNQVELTFKSGDLSREKKSLKDTVKE---GQKISGVIKRIEHYG 986

Query: 1473 LFITIENTNLVGLCHVSELSED-HVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMKS 1529
            LFI I+ T L GLCH ++LS++   D  E +  +R G+ VK  ++    EK RISL +K 
Sbjct: 987  LFIEIKGTKLTGLCHKTQLSDNPDADVAEALRQFRVGDLVKAAVIA--SEKGRISLSLKP 1044

Query: 1530 SYFKNDADNLQMSSEEESDEAIEEVG---------------SYNRSSLLENSSVAVQDMD 1574
            S F           +    EA E  G                   S   E S      M 
Sbjct: 1045 SLFGEGDFEEDEEEDGSQAEAPESFGVITDDESEGEEEGEHQEGPSDKDEASDSDDDAMQ 1104

Query: 1575 MESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD-----NGISQNQGHTDEAKTIDEKN 1629
            ++ +D     LA     A+ P          P +          QNQ   DE++  +  +
Sbjct: 1105 VDLDDTS---LAMPTPSATKPSQSQQPSTSAPSLTLSGGFQWFDQNQESGDESEADESSD 1161

Query: 1630 NRH--AKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1687
            + H    KK +++R++EI+      +    P +  +FERL+  SPN S++WI+YM+F L 
Sbjct: 1162 DEHEDGSKKRRKKRKKEIQQDLTADMHTKLPDSNSDFERLLLGSPNFSYLWIQYMSFQLQ 1221

Query: 1688 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1747
            +++V+KAR IA+RA+QTIN REE E+LN+W+A  NLEN YG   EE++   F+ A +  D
Sbjct: 1222 ISEVDKAREIAKRAIQTINFREEQERLNVWIALLNLENVYGT--EESLEATFKDAARAND 1279

Query: 1748 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQ 1806
             K +HL L  +++++ + + A++   +  KKF  SCKVW    +  LK  + E  + ++ 
Sbjct: 1280 SKTIHLRLAAIFDQSGKPEKAEQQFQRTCKKFGKSCKVWTLFSEHYLKLGKLEESRKLLP 1339

Query: 1807 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866
            R+L SL + KH+K IS+ A LE+K G  +RGR++FEGI+  +PKR DLWS+Y+D E    
Sbjct: 1340 RSLQSLEKRKHLKTISRFAQLEYKLGEPERGRTLFEGIVDSHPKRWDLWSVYIDMEGVQQ 1399

Query: 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            ++  IR LFER ++L +   K K  FKK+L+ EK +G++E +E VK+KA+E+ +   A
Sbjct: 1400 NIPAIRNLFERVLTLKMTSHKAKSFFKKWLDLEKRLGDDEGVENVKRKAVEWTQKAAA 1457



 Score =  208 bits (529), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 229/888 (25%), Positives = 388/888 (43%), Gaps = 91/888 (10%)

Query: 8   SQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRER 67
           SQK++ +D    +KA K + ++S K   +   AQ  +   + D   FPRGGG SLT  E 
Sbjct: 3   SQKRALEDSSTSHKAKKRKNEDSVKPKENLQPAQPTSSLLNADEIDFPRGGGSSLTALEV 62

Query: 68  DEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKIT 127
             I AE   E +A       K  KK+KKT  K+            +G   K+      + 
Sbjct: 63  KTIRAEAAKEADAELFKESAKPSKKRKKTTEKSTSK---------EGKKDKI--RIEHLN 111

Query: 128 LKNISAGMKLWGVVAEVNEKDLVICLPGGLRG--------------LARAADALDPIL-- 171
            K ++ GMK+ G +  +    L++ LP  L G              L R  +  D     
Sbjct: 112 YKRLNPGMKIMGQIVGILPLTLLVSLPNQLLGHIPITNISREYTQQLERMDEDEDMEDSD 171

Query: 172 -----DNEIEANEDNLLPTIFHVGQLVSCIVLQ-----------LDDDKKEIGK--RKIW 213
                D   +   D  L  +F +GQ V  +V             L   + E+ K  +++ 
Sbjct: 172 SDGEEDRPRQTTPD--LGQMFAIGQYVRAVVTATFQGGASDPSGLYRSRDELAKLCKRVE 229

Query: 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID 273
           LSL   L+ +G+ ++ ++ G  LTA VKS+EDHGYIL  G+P+  GFL   +  E  G  
Sbjct: 230 LSLSPDLVNEGVRVDDLKSGFTLTAAVKSVEDHGYILDLGIPNADGFLSFKDAKEVEGSS 289

Query: 274 -VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
            +  G L    V  +   ++   +++ P T +     ++   S+  ++PG +V   V  +
Sbjct: 290 KLAVGQLCNVTVSKLAANKRTCTVTASPSTFTSSAITEVS--SVTSIIPGSLVQALVTDV 347

Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---VDPTSRAVGL 389
             +GV+L  L +F G+VD  HL+ + P           +KV  R+L+    +P   AV L
Sbjct: 348 GADGVILQILGFFEGSVDRIHLRRSGPP-------KIGQKVKGRVLYQYSTEPPRLAVAL 400

Query: 390 T-----LNPYLLHNRAPPSHVKV------GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 438
                 L    L +  P S  ++      G I D  KVV+V+   GL L++         
Sbjct: 401 AEHIVGLANVQLSDENPASTQRLEEAYPFGHILDSVKVVKVEPERGLFLEVAP---GQEG 457

Query: 439 YVTISDVAEEEVRKLEKK--YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDV 496
           +  IS ++++ +  +     +K  +  R R+ G+   +GL    LK S FE       D 
Sbjct: 458 FAHISHISDDHLPSVSPTGPWKVNTLHRARVTGYHSFDGLLQLSLKPSIFEQKFLQLEDF 517

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           KPG +VKG + +V      V   G +  +    H ++  +  P ++FK G  +  +VL V
Sbjct: 518 KPGEIVKGTIKSVSDSAIFVSLSGNIDGVIWPNHFADIRLKHPTRRFKPGNPIKCKVLVV 577

Query: 557 KS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            S  KRI++T KKTL++S L I+S+  +     +THG I K+ +    V F+N ++    
Sbjct: 578 DSDRKRISLTAKKTLLESDLPIVSNVGDVKVGTVTHGVIFKVLEKHLMVEFFNNLKASVS 637

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGS 671
             E       + +  + VG+ V+ RI S      RI  S     +  T V + ++V+ G 
Sbjct: 638 AKEASESHTVKLADAFSVGRAVRVRIQSVDREQGRITASIRQAAVSQTPVVDVNVVEEGE 697

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLV 729
            V G +  V    +V+  +     +  +  + LA H  +  A V K ++KPG   + L+V
Sbjct: 698 AVGGTIAEVHAEHIVI-TLQPTKVRALLTVKSLASHRNISPAQVHK-LVKPGDSIEDLIV 755

Query: 730 -LDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
              N    +++        +A  L    S   +     V G V    + G  V+   +++
Sbjct: 756 ATKNPEKGIVIVTTKPKPKAAAPLKGQVSLETVAVGQQVGGRVLRHTKQGALVKITSKIS 815

Query: 787 GFAPRSKAVDGQRADLSKTY-YVGQSVRSNILDVNSETGRITLSLKQS 833
           G    +   D    D+ K +  V   + ++++ V+ +  ++TLS ++S
Sbjct: 816 GILHPTDTADDY--DVDKAFPPVDSLITASVVRVDKDKQQLTLSTRES 861



 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 157/361 (43%), Gaps = 31/361 (8%)

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
           PG +V+  V  V + G I+Q  G  +      H+      K G+K K     V      +
Sbjct: 336 PGSLVQALVTDVGADGVILQILGFFEGSVDRIHLRRSGPPKIGQKVK---GRVLYQYSTE 392

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGW----------ITKIE-KHGCFVRFY 606
             R+ V   + +V      LS    A+ + +   +          + K+E + G F+   
Sbjct: 393 PPRLAVALAEHIVGLANVQLSDENPASTQRLEEAYPFGHILDSVKVVKVEPERGLFLEVA 452

Query: 607 NGVQGFAPRSELGLD--PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
            G +GFA  S +  D  P   P+  + V  + + R+         + LS  +KP+ + E 
Sbjct: 453 PGQEGFAHISHISDDHLPSVSPTGPWKVNTLHRARVTGYHSFDGLLQLS--LKPS-IFEQ 509

Query: 665 DLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 718
             ++L     G +V G +  V+ +A+  +V   G   G I   H AD  L+H T      
Sbjct: 510 KFLQLEDFKPGEIVKGTIKSVSDSAI--FVSLSGNIDGVIWPNHFADIRLKHPTRR---F 564

Query: 719 KPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
           KPG     ++LV+D++   + L+AK +L+ S   + S+   +   +V HG +  ++E   
Sbjct: 565 KPGNPIKCKVLVVDSDRKRISLTAKKTLLESDLPIVSNVGDVKVGTVTHGVIFKVLEKHL 624

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V F   L       +A +     L+  + VG++VR  I  V+ E GRIT S++Q+  S 
Sbjct: 625 MVEFFNNLKASVSAKEASESHTVKLADAFSVGRAVRVRIQSVDREQGRITASIRQAAVSQ 684

Query: 838 T 838
           T
Sbjct: 685 T 685


>gi|353236542|emb|CCA68534.1| related to RRP5-processing of pre-ribosomal RNA [Piriformospora
            indica DSM 11827]
          Length = 1501

 Score =  321 bits (823), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 367/1323 (27%), Positives = 621/1323 (46%), Gaps = 147/1323 (11%)

Query: 646  ASRRINLSFMMKP--TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            ASRR+ LS + +     +S  DL+K   L + +  V      + + IA     G +P +H
Sbjct: 274  ASRRLELSLLPQQFNAGLSGKDLIKGQVLPAVITSVEDYGYTLDFAIAN--ISGFLPFQH 331

Query: 704  LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHP 761
             AD  +++  +   +K G      +V   ++  +      S +  A+   LPS AS +HP
Sbjct: 332  -ADQDDNSQEVPHNMKIGTWLATTVVKMEDNGRVCNVGIGSKVPKAELSTLPS-ASAVHP 389

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DV- 819
              +V   +      G  V+ LG  +G         G     + +  VG+ +++ IL D+ 
Sbjct: 390  GCLVKAMITESAPEGLNVQVLGLFSGTIHPLHVSPG-----AASTAVGKKIKARILWDIP 444

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG-FIIGSVI 878
             +E  +  LS      S      ++   L         +S ++G E + ++  F IG+++
Sbjct: 445  GTEPTQFALSTLPHILS------LRPRLL---------TSPNDGEESQDLQAVFPIGTIL 489

Query: 879  EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVA 928
            +       D    +  +    + G +    +A   V S          G+V +A ++   
Sbjct: 490  DAVKVARVDTDRSLFLQVAEGLLGTVHISDVADEHVASLPDSSGPYKVGTVQRARVIGHN 549

Query: 929  KAERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLV 987
              +  +  S+K +V   ++ +A+                D+ V   V   V  + E  L 
Sbjct: 550  PLDGTLRCSMKESVLSQKWLKAD----------------DIQVGSLVKGTVISLNEKGLF 593

Query: 988  LSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL-PSSS----TAGRLLL--L 1040
            +SL    H+I + +       K P+++F  G+ +   V+ + P+ +    TA + L+   
Sbjct: 594  VSLSGNVHAIVWPNHYADIPLKHPERKFRVGKLIKCRVLVVDPAQNRITLTAKKTLMEST 653

Query: 1041 LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
            L  IS  ET+            V ++  A + +I    L ++F     G I   E  +  
Sbjct: 654  LPIISAIETNL-----------VNAVTHAIVFKISERVLTVEFYNNVRGIIPYKEALE-- 700

Query: 1101 SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEI--GSKLLFEE 1158
              + +NL   FKIGQ V  RII              E+ ++  +L  S I   S +   +
Sbjct: 701  -TLGQNLDQAFKIGQVVKVRII--------------EVKLEAGILVASIIKANSPVGPSK 745

Query: 1159 CDV----SIGQRVTGYVYKVDNEWALLTI--SRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
             D+     IGQ V+G V  +  E   +T+  S  L        +    + + + +    I
Sbjct: 746  QDILAMTEIGQSVSGTVSDIHKEHVAITLQPSGALALLTLNNLANARDTSIAQLRSSLKI 805

Query: 1213 GKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            G  +   V+ S N EK L+ +V++P      D + ++ N N      E   +G R++ ++
Sbjct: 806  GDDLRDLVIVSKNSEKGLVIVVVKP-----KDNSKNMFNLNDPNLKLENLQLGQRVTGVV 860

Query: 1272 --SGVGGLVVQIGPHLYGRVHFTELKNICVSDP-LSGYDEGQFVKCKVLEISRTVRGTFH 1328
                  G V+++   LYG +H TE+ +   + P L   D    V   V  + +T R    
Sbjct: 861  LKHSKKGAVIKMSKRLYGCLHLTEISDDYSTHPKLPPID--SVVTAAVANVDKTHR---L 915

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
            ++LS+R SL           S+ VD     +    +L     V+G+V  V   G F+ LS
Sbjct: 916  LDLSIRPSL-----LEPQTQSSIVDP---RIRSFAELRIGQKVRGFVTEVVDFGVFVALS 967

Query: 1389 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
              LDAK+ + +L D Y +  +  F   ++V GR+L +     + E+TL++ +    S + 
Sbjct: 968  PSLDAKIPVKHLFDVYNKDWKGSFTPDQMVEGRILRINVDKNQAEMTLRSGE--ITSLAT 1025

Query: 1449 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH---VDNIETIYRA 1505
               LS+   G  V G I+ +  YG+FI I+ +++ GLCH SEL++ +    D +   ++ 
Sbjct: 1026 NVTLSDFSKGQRVDGVIQNIAEYGVFIQIKGSDIKGLCHRSELADPNGPSADEMLKTFKK 1085

Query: 1506 GEKVKVKILKVDKEKRRISLGMKSS-YFKNDADNLQMSSEEESDEAIEEVGS---YNRSS 1561
            G+ V+  I+ VD EK+R+   +K S +F  + ++++M+S  E+ +   + GS    N   
Sbjct: 1086 GDVVRALIISVDAEKKRLGFSLKPSHFFDEELEDVEMASGGENQDQNSDDGSEIVMNGQE 1145

Query: 1562 LLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDE 1621
              E  S   Q+ D    DG S +  + E+    P   +NL           + N    DE
Sbjct: 1146 PDEEDSGDEQEQDT---DGHSEITREPENEMGAP--AINLAAPL----RWTAANDAEEDE 1196

Query: 1622 AK-TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIK 1680
            A+ + DE +   A+KK K  R+ EI       L+  AP++  +FERL+ +SPNSS++W++
Sbjct: 1197 AEISSDEDDGGPARKKRK--RKHEILQDLTLDLQSRAPQSTADFERLLLASPNSSYLWLQ 1254

Query: 1681 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1740
            +MAF L ++D+EKAR +  RAL+ IN REE E+LN+W+   NLE  YG   E  +  +F+
Sbjct: 1255 FMAFQLQLSDIEKAREVGRRALKAINFREEQERLNVWIGLLNLEVTYGT--EATLDAIFK 1312

Query: 1741 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQE 1799
             A +  D K VH  L  L +  ++ + A+E   K  KKF  SCKVW    +   K+   E
Sbjct: 1313 EAARANDSKTVHWRLALLLDDAQKPEQAEEQFRKSCKKFGSSCKVWTLFAEHYFKRGMPE 1372

Query: 1800 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859
              + ++ ++LLSL + KH+K  S+ A LE++ G  +RGR++FEGI+  + KR DLW+IY+
Sbjct: 1373 KARELLSKSLLSLEKRKHLKVASKFAQLEYRMGDPERGRTLFEGIVDTHRKRLDLWNIYI 1432

Query: 1860 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
            D E    D+  IR + ERAI+L L  KK KFLFKK+LE EK +G++E    VK KA+E+ 
Sbjct: 1433 DMETGQRDIHRIRNICERAITLKLSKKKAKFLFKKWLELEKRLGDKEGEAVVKVKAVEWT 1492

Query: 1920 EST 1922
            +S+
Sbjct: 1493 QSS 1495



 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 202/769 (26%), Positives = 328/769 (42%), Gaps = 102/769 (13%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           +A++  +S  +   D  K  K   N  K S ++      A+ LA  P   V V       
Sbjct: 36  VASAPTQSSSRVKPDYGKLTKKMSNVDKTSPER------AKKLATRPAKRVAVASLFKTR 89

Query: 61  S--LTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGK 118
           S  L ++ R+E   E D++         KKNKK+ +  + K+       G L  + +  K
Sbjct: 90  STFLEEKLREEAIREADSQIFKESTSSLKKNKKRSRDGKSKS-------GDLDEEDLQNK 142

Query: 119 LPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADAL- 167
                  ++ K +  G ++ G V  +    +V+ LP  + G          + +A D L 
Sbjct: 143 DSLRIQHLSYKKLLPGTRILGQVIAILPFSIVLSLPHQMVGHVPVDKVSHIVNKAMDELG 202

Query: 168 DPILDNEIEANEDNL------------LPTIFHVGQLVSCIV-----------------L 198
           D   +N+ +  E++             L  +F +GQ V  +V                 +
Sbjct: 203 DDGSENDADEEENSTSDEEEKISRIATLEDMFTIGQYVLAVVTAVHPQGVVFTPASGASV 262

Query: 199 QLDDDKKEIGK--RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
            L   + E+ +  R++ LSL       GLS + + +G VL A + S+ED+GY L F + +
Sbjct: 263 DLGKPQNELDRASRRLELSLLPQQFNAGLSGKDLIKGQVLPAVITSVEDYGYTLDFAIAN 322

Query: 257 FTGFLP-----RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL 311
            +GFLP     +++ ++    ++K G  L   V  ++   +V  +       SK    +L
Sbjct: 323 ISGFLPFQHADQDDNSQEVPHNMKIGTWLATTVVKMEDNGRVCNVG----IGSKVPKAEL 378

Query: 312 KGI-SIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 370
             + S   + PG +V   +      G+ +  L  F+GT+   H+     +T         
Sbjct: 379 STLPSASAVHPGCLVKAMITESAPEGLNVQVLGLFSGTIHPLHVSPGAASTAVG------ 432

Query: 371 KKVNARILF----VDPTSRAVG-----LTLNPYLLH--NRAPPSH-----VKVGDIYDQS 414
           KK+ ARIL+     +PT  A+      L+L P LL   N    S        +G I D  
Sbjct: 433 KKIKARILWDIPGTEPTQFALSTLPHILSLRPRLLTSPNDGEESQDLQAVFPIGTILDAV 492

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFR 471
           KV RVD    L L +    + T   V ISDVA+E V  L      YK G+  R R++G  
Sbjct: 493 KVARVDTDRSLFLQVAEGLLGT---VHISDVADEHVASLPDSSGPYKVGTVQRARVIGHN 549

Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 531
            L+G     +K S          D++ G +VKG VI+++  G  V   G V A+    H 
Sbjct: 550 PLDGTLRCSMKESVLSQKWLKADDIQVGSLVKGTVISLNEKGLFVSLSGNVHAIVWPNHY 609

Query: 532 SEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
           ++  +  P +KF+VG  +  RVL V     RIT+T KKTL++S L I+S+        +T
Sbjct: 610 ADIPLKHPERKFRVGKLIKCRVLVVDPAQNRITLTAKKTLMESTLPIISAIETNLVNAVT 669

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM-----SSI 644
           H  + KI +    V FYN V+G  P  E     G      + +GQVVK RI+     + I
Sbjct: 670 HAIVFKISERVLTVEFYNNVRGIIPYKEALETLGQNLDQAFKIGQVVKVRIIEVKLEAGI 729

Query: 645 PASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
             +  I  +  + P++     + ++G  VSG V  +    V + +   G
Sbjct: 730 LVASIIKANSPVGPSKQDILAMTEIGQSVSGTVSDIHKEHVAITLQPSG 778



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 131/606 (21%), Positives = 230/606 (37%), Gaps = 116/606 (19%)

Query: 627  SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED----DLVKLGSLVSGVVDVVTP 682
            S  Y VG V + R++   P    +  S  MK + +S+     D +++GSLV G V  ++ 
Sbjct: 532  SGPYKVGTVQRARVIGHNPLDGTLRCS--MKESVLSQKWLKADDIQVGSLVKGTV--ISL 587

Query: 683  NAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
            N   ++V   G     +   H AD    H E    +  +IK      ++LV+D   + + 
Sbjct: 588  NEKGLFVSLSGNVHAIVWPNHYADIPLKHPERKFRVGKLIKC-----RVLVVDPAQNRIT 642

Query: 739  LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
            L+AK +L+ S   + S       N+V H  V  I E    V F   + G  P  +A++  
Sbjct: 643  LTAKKTLMESTLPIISAIETNLVNAVTHAIVFKISERVLTVEFYNNVRGIIPYKEALETL 702

Query: 799  RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS-------------------CCSSTD 839
              +L + + +GQ V+  I++V  E G +  S+ ++                     S T 
Sbjct: 703  GQNLDQAFKIGQVVKVRIIEVKLEAGILVASIIKANSPVGPSKQDILAMTEIGQSVSGTV 762

Query: 840  ASFMQEHFLL--------------------EEKIAMLQSSKHNGSELKWV--------EG 871
            +   +EH  +                    +  IA L+SS   G +L+ +        +G
Sbjct: 763  SDIHKEHVAITLQPSGALALLTLNNLANARDTSIAQLRSSLKIGDDLRDLVIVSKNSEKG 822

Query: 872  FIIGSVIEGKVHESNDFGV------VVSFEEHSDVYGFITHHQLAGATVESG-------- 917
             +I  V++ K +  N F +      + + +    V G +  H   GA ++          
Sbjct: 823  LVI-VVVKPKDNSKNMFNLNDPNLKLENLQLGQRVTGVVLKHSKKGAVIKMSKRLYGCLH 881

Query: 918  ------------------SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKK 959
                              SV+ AA+ +V K  RL+DLS++   ++         Q+    
Sbjct: 882  LTEISDDYSTHPKLPPIDSVVTAAVANVDKTHRLLDLSIRPSLLE------PQTQSSIVD 935

Query: 960  RKREASKDLGVHQTVNAIV-EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNG 1018
             +  +  +L + Q V   V E+V     V   P  +  I    + D   + + +  F   
Sbjct: 936  PRIRSFAELRIGQKVRGFVTEVVDFGVFVALSPSLDAKIPVKHLFDVYNKDW-KGSFTPD 994

Query: 1019 QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLE 1078
            Q V   ++ +        + L    I+   T+ +      S +  G  V   I  I    
Sbjct: 995  QMVEGRILRINVDKNQAEMTLRSGEITSLATNVT-----LSDFSKGQRVDGVIQNIAEYG 1049

Query: 1079 LRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1137
            + ++  G    G  H +E+ D      + +   FK G  V A II+     D +K  L  
Sbjct: 1050 VFIQIKGSDIKGLCHRSELADPNGPSADEMLKTFKKGDVVRALIISV----DAEKKRLG- 1104

Query: 1138 LSIKPS 1143
             S+KPS
Sbjct: 1105 FSLKPS 1110



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 142/369 (38%), Gaps = 35/369 (9%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKP-GKKFKVGAELVFR 552
           D+  G V+   + +V+ +G  + F    +    P  H  + +  +      K+G  L   
Sbjct: 295 DLIKGQVLPAVITSVEDYGYTLDFAIANISGFLPFQHADQDDNSQEVPHNMKIGTWLATT 354

Query: 553 VLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           V+ ++   +   V     + K++L+ L S +      +    IT+    G  V+      
Sbjct: 355 VVKMEDNGRVCNVGIGSKVPKAELSTLPSASAVHPGCLVKAMITESAPEGLNVQVLGLFS 414

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS-------- 662
           G      L + PG   ++   VG+ +K RI+  IP +     +    P  +S        
Sbjct: 415 GTI--HPLHVSPGAASTA---VGKKIKARILWDIPGTEPTQFALSTLPHILSLRPRLLTS 469

Query: 663 ------EDDL---VKLGSLVSGV-VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 712
                   DL     +G+++  V V  V  +  +   +A+G   GT+    +AD  EH  
Sbjct: 470 PNDGEESQDLQAVFPIGTILDAVKVARVDTDRSLFLQVAEGLL-GTVHISDVAD--EHVA 526

Query: 713 VMKSVIKP---GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
            +     P   G      ++  N     L  +    + S + L +D   I   S+V G V
Sbjct: 527 SLPDSSGPYKVGTVQRARVIGHNPLDGTLRCSMKESVLSQKWLKAD--DIQVGSLVKGTV 584

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            ++ E G FV   G +      +   D       + + VG+ ++  +L V+    RITL+
Sbjct: 585 ISLNEKGLFVSLSGNVHAIVWPNHYADIPLKHPERKFRVGKLIKCRVLVVDPAQNRITLT 644

Query: 830 LKQSCCSST 838
            K++   ST
Sbjct: 645 AKKTLMEST 653


>gi|402220022|gb|EJU00095.1| U3 snoRNP-associated protein Rrp5 [Dacryopinax sp. DJM-731 SS1]
          Length = 1492

 Score =  319 bits (817), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 216/747 (28%), Positives = 398/747 (53%), Gaps = 69/747 (9%)

Query: 1220 VLSINKEKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
            V+S N EK+++ L V  P  +     +  IS   +    H G I+ G++  I    G   
Sbjct: 768  VVSKNPEKRIVILAVTLPGSNAGPSSSTAISWKTL----HVGQILLGQV--IGEKNGSTS 821

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V++  +L GR+H  +L +  + + +     G  +K  V+ +    R           +LD
Sbjct: 822  VRLSQYLIGRLHPLDLTD-NLENGIVFPRAGSALKVAVVGVDPHAR-----------TLD 869

Query: 1339 GMSSTNSSDLSTDVDTP--GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
               ST  S L+ +   P     +  +++L  +  V G VKN++  G F+ L R + A+V 
Sbjct: 870  --LSTRPSRLNPESHPPIVDPEITSLDNLQVDDKVGGVVKNISDSGLFVSLGRNITARVQ 927

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR----TASQSEINNL 1452
            +  L D +V+  +  F + ++V G++  V+    RV++++++   +    +  + ++ ++
Sbjct: 928  IKELFDEFVKDWQTRFSVNQVVKGKITHVDHEKNRVDMSMRSGVRKHHKSSGKEDKLRHM 987

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKV 1509
             +      V G++  +  YGLFI I+++++ GLCH SELS+    +++     +R G+ V
Sbjct: 988  KDFEKRQKVTGKVTSITKYGLFILIDDSDVSGLCHHSELSDTKQGDVQVALQGFRVGDTV 1047

Query: 1510 KVKILKVDKEKRRISLGMKSSYFKN------DADNLQMSSEEESDEAIEE---------V 1554
            K  IL +++E +++SLG+K SYF        D  + Q+ + +E+ E+ +E         +
Sbjct: 1048 KAVILWINEETKKVSLGLKPSYFTAEDYETADTPDDQLEASKEAGESEDEDENTTSWAGI 1107

Query: 1555 GSYNRSSLLENSSVAVQDMDME--------------SEDGGSLVLAQIESRA-----SVP 1595
            G   ++ + E+ + +    D                S D GS   A    ++     S P
Sbjct: 1108 GEGGKTDMDEDGAASFLGFDDVAEEEAESEDDVIILSGDHGSKSSAAPAKKSNPATTSAP 1167

Query: 1596 PLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1655
             L+++   +     +  ++     +E+    E ++ H +KK+K  R  +I       +++
Sbjct: 1168 TLQLSGGFQWSHTVDDEAEEDAPANESDVESEASDSHPRKKKK--RGHQIEEDLTLAMQE 1225

Query: 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1715
              P +  +FERL+  SPNSSF+WI++M+F L ++DV+ AR IA+RAL+ IN REE EK+N
Sbjct: 1226 RTPESVADFERLLLGSPNSSFLWIQFMSFYLQLSDVDNAREIAKRALKVINFREEQEKMN 1285

Query: 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1775
            +W+A  NLEN  G   EE++ K FQ A +  D K +HL +  +++ + + + A+++  + 
Sbjct: 1286 VWIALLNLENTTGT--EESLEKTFQDATRANDSKAIHLRMATIFDESGKPEKAEDMHKRA 1343

Query: 1776 IKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
            +KKF  S  VW       + Q + +  + ++ R+L SL + KHI+ I + A +E++ G  
Sbjct: 1344 VKKFNESTTVWTSFGHHYMSQGKLDEARELLPRSLKSLEKRKHIETILKFAQMEYELGEP 1403

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
            +RG+++FE I+  +PKR DLW +Y+D E + GD+  +R LF+R ++L L   K K +FKK
Sbjct: 1404 ERGKTLFEAIVDSHPKRLDLWFVYVDMEAKQGDLQTVRKLFDRMLALKLNTFKAKSVFKK 1463

Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYVES 1921
            +LE EK +G+EE  E+VK +A+E++++
Sbjct: 1464 WLELEKRLGDEEGQEHVKARAVEWMQN 1490



 Score =  201 bits (512), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 177/642 (27%), Positives = 287/642 (44%), Gaps = 85/642 (13%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEF-EAVERGLHKKNKKKKKKTERKANETVDDLGSLFG 112
           FPRGGG +LT  E  E   E   E  EA E+ L +K K   K  E KA            
Sbjct: 66  FPRGGGTTLTAHEVKEAREEAKREIKEAEEKTLKRKRKSSMKGGEVKAES---------- 115

Query: 113 DGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD 172
              +G    + N    K ++ G +L G +  +    L++ LP  L G       +   L 
Sbjct: 116 ---AGTRVEHMN---YKRLNPGTRLLGQITTIYPLHLILSLPNQLVGYV-PITGISAQLT 168

Query: 173 NEIEANEDNL----------------------LPTIFHVGQLV-SCIV------------ 197
            E+E  +                         L +IFHVGQ V +C+V            
Sbjct: 169 TELEKEDARFTSAAEGEDEDMEEREEEEGAPELASIFHVGQYVQACVVNVRSAGTRAAPE 228

Query: 198 LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
           L+   ++ E   R++ L+L   ++ +G+ ++ + +G +L   +KS+EDHGY +  G+P  
Sbjct: 229 LEKPKNEMEAMARRVELTLVPEVVNEGVVIKDLVKGFMLPGAIKSVEDHGYSVELGIPHL 288

Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS-I 316
           +GFLP  N   +S   + PG LL   V  +  ++++  L+  P    +     L  +S +
Sbjct: 289 SGFLPFTNTPPSSS-RLSPGHLLTCTVSEVPASKRICTLTIQPSQKEEV----LDQVSNV 343

Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
             L+PG +V   + + + +G+ L  L +F GT+D+ HL    P       Y    K+ AR
Sbjct: 344 TSLLPGTLVRGLITASVTSGLNLQILGFFEGTIDLTHLPKD-PAL-----YKVGTKLKAR 397

Query: 377 ILFVDPTSRAVGLTLN--PYLLHNRAPP-------SHVKVGDIYDQSKVVRVDR--GLGL 425
           +L+  P S      L+  P+++   AP             G+I    KVVRV+   GL +
Sbjct: 398 VLWHLPGSSPPKFALSALPHVVDLAAPEVDGVSTQEKHPYGEILHGVKVVRVEAEWGLSV 457

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILK 482
           +LD       T  +V I+++++E +  L      +K G+    R+LGF  L+GL    LK
Sbjct: 458 VLD----DEETRGFVHIANISDEHIPALSATSGAWKVGTKHDARVLGFYALDGLLRLSLK 513

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
            S  E       D  PG +VKG +  +   G  V   G +     L  +++ E+  P K+
Sbjct: 514 PSQLERRFVQTGDFTPGEIVKGAIENLTDVGMFVDVGGDISGRVALDQLADIELKHPEKR 573

Query: 543 FKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           FK GA +  R+L V  +  R+T+T KK+L+ S L I++   +A   ++    ++K+   G
Sbjct: 574 FKAGASVKCRILAVDPEHGRLTLTCKKSLLSSDLPIIAKLDDAKQGMVADAVVSKVLPSG 633

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
             V  Y GV+GF P  E           +   GQ VK +++S
Sbjct: 634 ALVMLYGGVKGFVPIREASEGYIKSVDEILKPGQAVKVKVLS 675



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 100/451 (22%), Positives = 185/451 (41%), Gaps = 58/451 (12%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII- 1122
            G+LV+  IT      L L+    F G I +T +  D +         +K+G  + AR++ 
Sbjct: 349  GTLVRGLITASVTSGLNLQILGFFEGTIDLTHLPKDPAL--------YKVGTKLKARVLW 400

Query: 1123 --AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY-VYKVDNEWA 1179
                S+ P       + LS  P ++ ++      +  +     G+ + G  V +V+ EW 
Sbjct: 401  HLPGSSPPK------FALSALPHVVDLAAPEVDGVSTQEKHPYGEILHGVKVVRVEAEWG 454

Query: 1180 LLTISRHLKAQLFI----LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
            L  +    + + F+    +   + P+ L      + +G      VL       LLRL L+
Sbjct: 455  LSVVLDDEETRGFVHIANISDEHIPA-LSATSGAWKVGTKHDARVLGFYALDGLLRLSLK 513

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK----ILSGVGGLVVQIGPHLYGRVHF 1291
            P Q               + F+  GD   G I K     L+ VG + V +G  + GRV  
Sbjct: 514  PSQ-------------LERRFVQTGDFTPGEIVKGAIENLTDVG-MFVDVGGDISGRVAL 559

Query: 1292 TELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1351
             +L +I +  P   +  G  VKC++L +        H  L+L        +   S LS+D
Sbjct: 560  DQLADIELKHPEKRFKAGASVKCRILAVDPE-----HGRLTL--------TCKKSLLSSD 606

Query: 1352 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1411
            +      + K++D    M+    V  V   G  +ML   +   V +   S+GY++S ++ 
Sbjct: 607  LPI----IAKLDDAKQGMVADAVVSKVLPSGALVMLYGGVKGFVPIREASEGYIKSVDEI 662

Query: 1412 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1471
               G+ V  +VLSV      +  +L+ +       +   ++ ++ VG  V  +IK V++ 
Sbjct: 663  LKPGQAVKVKVLSVNTEEGNILASLRQAQPSYQPAAPGVDVEDIAVGSNVEAEIKDVQAI 722

Query: 1472 GLFITIENTNLVGLCHVSELSEDHVDNIETI 1502
             + ++I+      L  ++ L+      +E +
Sbjct: 723  NVVLSIQPGGQTALLSLANLANRRNTTVEAL 753



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D +P  IV+G ++N+T  G F+ +   +  +V L  L+D  ++ PEK F  G  V  R+L
Sbjct: 526  DFTPGEIVKGAIENLTDVGMFVDVGGDISGRVALDQLADIELKHPEKRFKAGASVKCRIL 585

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1483
            +V+P   R+ +T K S   ++    I  L +   G +    + +V   G  + +    + 
Sbjct: 586  AVDPEHGRLTLTCKKS-LLSSDLPIIAKLDDAKQGMVADAVVSKVLPSGALVMLYG-GVK 643

Query: 1484 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            G   + E SE ++ +++ I + G+ VKVK+L V+ E+  I   ++ +
Sbjct: 644  GFVPIREASEGYIKSVDEILKPGQAVKVKVLSVNTEEGNILASLRQA 690



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 152/364 (41%), Gaps = 33/364 (9%)

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--- 554
           PG +V+G + A  + G  +Q  G  +    L H+      K    +KVG +L  RVL   
Sbjct: 348 PGTLVRGLITASVTSGLNLQILGFFEGTIDLTHLP-----KDPALYKVGTKLKARVLWHL 402

Query: 555 -GVKSKRITVT---HKKTLVKSKLAILSSYAEATDRLITHGW-ITKIEKHGCFVRFYNG- 608
            G    +  ++   H   L   ++  +S+  +     I HG  + ++E         +  
Sbjct: 403 PGSSPPKFALSALPHVVDLAAPEVDGVSTQEKHPYGEILHGVKVVRVEAEWGLSVVLDDE 462

Query: 609 -VQGF---APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR---- 660
             +GF   A  S+  +      S  + VG     R++        + LS  +KP++    
Sbjct: 463 ETRGFVHIANISDEHIPALSATSGAWKVGTKHDARVLGFYALDGLLRLS--LKPSQLERR 520

Query: 661 -VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVI 718
            V   D    G +V G ++ +T   V ++V   G   G +  + LAD  L+H    +   
Sbjct: 521 FVQTGDFTP-GEIVKGAIENLT--DVGMFVDVGGDISGRVALDQLADIELKHP---EKRF 574

Query: 719 KPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
           K G     ++L +D E   L L+ K SL++S   + +         V    V  ++ +G 
Sbjct: 575 KAGASVKCRILAVDPEHGRLTLTCKKSLLSSDLPIIAKLDDAKQGMVADAVVSKVLPSGA 634

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V   G + GF P  +A +G    + +    GQ+V+  +L VN+E G I  SL+Q+  S 
Sbjct: 635 LVMLYGGVKGFVPIREASEGYIKSVDEILKPGQAVKVKVLSVNTEEGNILASLRQAQPSY 694

Query: 838 TDAS 841
             A+
Sbjct: 695 QPAA 698


>gi|440791390|gb|ELR12628.1| S1 RNA binding domain containing protein [Acanthamoeba castellanii
            str. Neff]
          Length = 1936

 Score =  311 bits (798), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/266 (55%), Positives = 202/266 (75%), Gaps = 4/266 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P+T D++E+L+ +SPNSSF+WIKYMAF LS+A++++AR IAERAL+ IN REE EKLN+W
Sbjct: 1669 PKTADDYEKLLLASPNSSFLWIKYMAFQLSIAEIDRAREIAERALKRINFREEQEKLNVW 1728

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            VA  NLEN++G+   E++++VFQRAL Y DPK V+L L+G+YER+EQ KLA+EL   M K
Sbjct: 1729 VALMNLENKHGS--NESLMQVFQRALTYNDPKTVNLQLVGIYERSEQYKLAEELYKAMTK 1786

Query: 1778 KFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835
            KFKHS ++WLR  Q  LK     EG + V++RAL  LP+ KHI  IS+ A +EFK+G  +
Sbjct: 1787 KFKHSWQIWLRYSQFHLKNLHSIEGARKVLERALQVLPKKKHIGVISKMAQMEFKHGSPE 1846

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            RGR++FEGILS YPKR D+W IY+D E+ LGD   IR LFE+  +L L  KKM++ F++Y
Sbjct: 1847 RGRTIFEGILSNYPKRVDIWGIYIDMELALGDHGAIRNLFEKVTTLQLSSKKMRYFFERY 1906

Query: 1896 LEYEKSVGEEERIEYVKQKAMEYVES 1921
            L++EK  G +E + +V++KA +YV S
Sbjct: 1907 LKFEKEHGTKESVGHVREKARQYVLS 1932


>gi|225680123|gb|EEH18407.1| rRNA biogenesis protein RRP5 [Paracoccidioides brasiliensis Pb03]
          Length = 1175

 Score =  311 bits (796), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 299/1089 (27%), Positives = 519/1089 (47%), Gaps = 119/1089 (10%)

Query: 726  QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
            ++L ++ E   L L+ K SL+NS      + S I P +   G + +I   G  V+F G +
Sbjct: 24   RILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQSPGTIISIHPHGAIVQFYGEV 83

Query: 786  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
             GF P S+  +    D S+ + VGQ V  + L V++E  ++ +S K     ST     + 
Sbjct: 84   RGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAEVRKLVVSCKDP---STSTETYKN 140

Query: 846  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 905
             F                      E    G ++   V E +   +++  E    V     
Sbjct: 141  AF----------------------ENIQPGDLVSCTVFEKSKEVILLRLEGSGLVARLNA 178

Query: 906  HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVF-IDRFREANSNRQAQKKKRKREA 964
             H   G + + GS + A I    K   LV LS++ V  + +     S +QA+++      
Sbjct: 179  EHVTDGQSSKHGSAL-ACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAK 237

Query: 965  SKDLGVHQTVNAIVE-IVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIA 1023
             +DL     V   V+ I+ +   V  L      +    + D +  K P   +   Q++ +
Sbjct: 238  FEDLQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAK-PDFGYTLSQTISS 296

Query: 1024 TVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS---------------SYD---VGS 1065
             V ++       R  L +K    ++   S  A+  S               S+D    G 
Sbjct: 297  FVHSIEDDRQ--RFTLSMKENQTSKQRVSDNARPASNANQASINPVDGDIKSFDDLTFGR 354

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFSNFKIGQTVTARII- 1122
            + +A+I  +K  ++ ++      GRI ++E+ D  D     +     FK  Q +  RII 
Sbjct: 355  ITKAKIVSVKETQINVQLADNIQGRIDVSEIFDGWDAIKDRKQPLRYFKPKQIIPVRIIG 414

Query: 1123 ---AKSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1174
               A+S+K  P   +S    ++ELS KPS L   +I    L     V IG    G+V  +
Sbjct: 415  IHDARSHKFLPISHRSGKYPVFELSAKPSSLESKDIE---LLSLDKVEIGSSWLGFVNNI 471

Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
             ++   + I+ +++ +L I D + + S + + ++ F +G A+  HV  +N +K  L L  
Sbjct: 472  GDDCLWINITPNVRGRLRITDVSDDLSLVGDVKKNFPVGSAIKVHVTGVNVDKNRLDL-- 529

Query: 1235 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
                   S K  D  N    +   +G+I+ GR++K+      ++VQ+     G ++  ++
Sbjct: 530  -------SAKHGDPLNKRTISDFSKGEILLGRVTKVSDR--QVLVQLSDTTVGAINLIDM 580

Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
                 +D  +      F K +VL +         V++  +  L  +S   S  LS+ +  
Sbjct: 581  -----ADDYTKVIPANFHKNEVLRVC-----ILDVDVPNKKIL--LSVRPSRVLSSSLPI 628

Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1414
                ++ I  L  N IV+G+V+ V + G F+ L  ++ A V +S+LSD Y++  + EF +
Sbjct: 629  EDPEIKSISQLKVNDIVRGFVRRVANNGLFVTLGHEVTAYVRISDLSDSYLKDWQSEFQV 688

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1474
             +LV GR++ V+  + +++++LK S      ++ I  + +L+ G IV G+++ VE +G F
Sbjct: 689  DQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAPIT-IRDLNRGQIVTGKVRSVEEFGAF 747

Query: 1475 ITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1533
            I I+ T NL GLCH +E++E  V++   ++  G+ VK KILK+D +K RISLG+K+SYFK
Sbjct: 748  IVIDGTANLSGLCHRTEMAEQKVEDARKLFEKGDIVKAKILKIDHDKERISLGLKASYFK 807

Query: 1534 NDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRAS 1593
                     S+++SD    E G  N  S+ EN      +++ ES+D  S+    +     
Sbjct: 808  --------ESDDKSDGENSEDG--NEQSVSENEDDGELELEFESDDDVSMGGVDLGGGDG 857

Query: 1594 VPPLEVNLDDEQPDM----DNGIS----------QNQGHT--DEAKTIDEKNNRHAKKKE 1637
                E N+ DE   M    D G++             G T  DEA      ++  A  K+
Sbjct: 858  S---ESNVSDEDVQMAGTEDTGVTGGLVTSGFDWNGSGTTGADEANDSGSSSDGQAVPKK 914

Query: 1638 KEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            K+ R+ EI+      L+   P++  ++ERL+   P+SS +W+KYMAF L +++V+KAR I
Sbjct: 915  KKRRKPEIQVDRTGDLDAHGPQSIADYERLLLGEPDSSLLWLKYMAFQLELSEVDKAREI 974

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
            AERAL++I I ++ EK NIW+A  NLEN +GN  ++++  VF+RA QY DP+++H  +  
Sbjct: 975  AERALRSIRIGQDAEKFNIWIAMLNLENIFGN--DDSLEDVFKRACQYNDPQEIHERMTS 1032

Query: 1758 LYERTEQNK 1766
            +Y ++ +N+
Sbjct: 1033 IYIQSGKNE 1041



 Score =  110 bits (274), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 159/320 (49%), Gaps = 16/320 (5%)

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
           H+S+ ++  P +KF+ GA++  R+L V  + +++ +T KK+L+ S+      Y++     
Sbjct: 2   HLSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGN 61

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            + G I  I  HG  V+FY  V+GF P SE+      +PS  + VGQVV    ++     
Sbjct: 62  QSPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAEV 121

Query: 648 RRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R++ +S    P+  +E      + ++ G LVS  V   +   +++ +   G     +  E
Sbjct: 122 RKLVVS-CKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEGSGLV-ARLNAE 179

Query: 703 HLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ--QLPSDA 756
           H+ D    +H + + + I+ G +   L++L  +  + L+  S K SL  + Q  +LP+  
Sbjct: 180 HVTDGQSSKHGSAL-ACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKF 238

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
             +   S V G+V NII  G FV FL  LTGF P+    D   A     Y + Q++ S +
Sbjct: 239 EDLQEGSKVTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFV 298

Query: 817 LDVNSETGRITLSLKQSCCS 836
             +  +  R TLS+K++  S
Sbjct: 299 HSIEDDRQRFTLSMKENQTS 318



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 141/345 (40%), Gaps = 54/345 (15%)

Query: 1201 SELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEG 1260
            ++LQ  +R+F  G  V+  +LS+N EK+ LRL L+            + N     +    
Sbjct: 6    TKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKK----------SLLNSESPAWKEYS 55

Query: 1261 DIVGGRISKILSGVGGLVVQIGPH-----LYGRVH----FTELKNICVSDPLSGYDEGQF 1311
            DI+ G  S       G ++ I PH      YG V      +E+    + DP   +  GQ 
Sbjct: 56   DILPGNQSP------GTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQV 109

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            V    L +   VR                   +  D ST  +T   +    E++ P  +V
Sbjct: 110  VNVHALTVHAEVRKLV---------------VSCKDPSTSTET---YKNAFENIQPGDLV 151

Query: 1372 QGYVKNVTSKGCFIML-SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR------VLS 1424
               V   + +   + L    L A++   +++DG  +S +    +  +  G+      +LS
Sbjct: 152  SCTVFEKSKEVILLRLEGSGLVARLNAEHVTDG--QSSKHGSALACIRVGQKLHDLVILS 209

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1483
            ++ + + ++V+ K S  +   + E+     +L  G  V G +K + + GLF+      L 
Sbjct: 210  MQKVHRLIKVSNKPSLKQARQRGELPAKFEDLQEGSKVTGFVKNIIADGLFVEFLR-GLT 268

Query: 1484 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            G      + +DHV   +  Y   + +   +  ++ +++R +L MK
Sbjct: 269  GFLPKRLMDDDHVAKPDFGYTLSQTISSFVHSIEDDRQRFTLSMK 313



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF--EGLVFT-HSDVKPGMV 501
           +++ +++  E+K++EG+ V  RIL     +      LK S    E   +  +SD+ PG  
Sbjct: 3   LSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKEYSDILPGNQ 62

Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
             G +I++   GAIVQF G V+   P+  MSE  I  P + F VG  +    L V ++
Sbjct: 63  SPGTIISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTVHAE 120



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 166/385 (43%), Gaps = 51/385 (13%)

Query: 225 LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKPGLLLQG 282
           LSL+ V+ G     +V +I D    ++   P+  G L   +++++  +  DVK    +  
Sbjct: 453 LSLDKVEIGSSWLGFVNNIGDDCLWINI-TPNVRGRLRITDVSDDLSLVGDVKKNFPVGS 511

Query: 283 VVR------SIDRTR-KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
            ++      ++D+ R  +     DP          L   +I     G ++  RV  + + 
Sbjct: 512 AIKVHVTGVNVDKNRLDLSAKHGDP----------LNKRTISDFSKGEILLGRVTKVSDR 561

Query: 336 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
            V++       G +++  + + + T     ++++++ +   IL VD  ++ + L++ P  
Sbjct: 562 QVLVQLSDTTVGAINLIDMADDY-TKVIPANFHKNEVLRVCILDVDVPNKKILLSVRPSR 620

Query: 396 LHNRAPP---------SHVKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDV 445
           + + + P         S +KV DI  +  V RV + GL + L    T     AYV ISD+
Sbjct: 621 VLSSSLPIEDPEIKSISQLKVNDIV-RGFVRRVANNGLFVTLGHEVT-----AYVRISDL 674

Query: 446 AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVV 502
           ++  ++  + +++    V  RI+            LK S  E       T  D+  G +V
Sbjct: 675 SDSYLKDWQSEFQVDQLVHGRIIFVDAEANKLQMSLKESVLEPNYKAPITIRDLNRGQIV 734

Query: 503 KGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            GKV +V+ FGA +   G   +  LC    M+E ++    K F+ G         VK+K 
Sbjct: 735 TGKVRSVEEFGAFIVIDGTANLSGLCHRTEMAEQKVEDARKLFEKGDI-------VKAKI 787

Query: 561 ITVTHKKTLVKSKLAILSSYAEATD 585
           + + H K  +   L + +SY + +D
Sbjct: 788 LKIDHDKERI--SLGLKASYFKESD 810



 Score = 48.5 bits (114), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 11/149 (7%)

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLH 1456
            +LSD  ++ PE++F  G  V+ R+LSV    +++ +TLK S  +S + +  E    S++ 
Sbjct: 2    HLSDTKLQHPERKFREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPAWKE---YSDIL 58

Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
             G+   G I  +  +G  +      + G   VSE+SE ++ +    +  G+ V V  L V
Sbjct: 59   PGNQSPGTIISIHPHGAIVQFYG-EVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTV 117

Query: 1517 DKEKRRISLGMK-----SSYFKNDADNLQ 1540
              E R++ +  K     +  +KN  +N+Q
Sbjct: 118  HAEVRKLVVSCKDPSTSTETYKNAFENIQ 146



 Score = 42.0 bits (97), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 136/319 (42%), Gaps = 29/319 (9%)

Query: 367 YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 426
           + +  +V+ARIL V+   R + LTL   LL++ +P          + S ++  ++  G +
Sbjct: 15  FREGAQVSARILSVNLEKRQLRLTLKKSLLNSESPA-------WKEYSDILPGNQSPGTI 67

Query: 427 LDI-PSTPV-----STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG---LA 477
           + I P   +         ++ +S+++E  ++   + +  G  V V  L   H E    + 
Sbjct: 68  ISIHPHGAIVQFYGEVRGFLPVSEMSEAYIKDPSQHFIVGQVVNVHALTV-HAEVRKLVV 126

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEI 536
           +    +++ E       +++PG +V   V        +++  G G+ A     H+++ + 
Sbjct: 127 SCKDPSTSTETYKNAFENIQPGDLVSCTVFEKSKEVILLRLEGSGLVARLNAEHVTDGQS 186

Query: 537 VKPGKKF---KVGA---ELVFRVLGVKSKRITVTHKKTL--VKSKLAILSSYAEATDRLI 588
            K G      +VG    +LV   +    + I V++K +L   + +  + + + +  +   
Sbjct: 187 SKHGSALACIRVGQKLHDLVILSMQKVHRLIKVSNKPSLKQARQRGELPAKFEDLQEGSK 246

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G++  I   G FV F  G+ GF P+  +  D   +P   Y + Q +   + S     +
Sbjct: 247 VTGFVKNIIADGLFVEFLRGLTGFLPKRLMDDDHVAKPDFGYTLSQTISSFVHSIEDDRQ 306

Query: 649 RINLSFMMKPT---RVSED 664
           R  LS     T   RVS++
Sbjct: 307 RFTLSMKENQTSKQRVSDN 325


>gi|345568479|gb|EGX51373.1| hypothetical protein AOL_s00054g443 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1795

 Score =  309 bits (791), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 242/890 (27%), Positives = 444/890 (49%), Gaps = 86/890 (9%)

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVEN----LFSNFKIGQTVTARI 1121
            + +  IT IKP ++ +       GR+ ++E   D  ++       L     +GQ +  ++
Sbjct: 930  ITKGRITAIKPTQINIDLADNVKGRVDVSEFFKDWDSIKNKKHPLLRQGLAVGQEIDVKV 989

Query: 1122 IAKSNKPDMKKSFLWELSIKPS-MLTVSEIGSKL-------LFEECDVSIGQRVTGYVYK 1173
            I      D+K      +S + S  L   E+ +K        L +  D+   +    +V  
Sbjct: 990  IGIH---DVKSHKYLPISHRVSGKLPTFELSAKQVTGKANSLVKYSDLKKEETYLAFVNN 1046

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            V  +   + +S  ++ ++ +L+ + + S L + ++ + +G A+   VL +N +   L L 
Sbjct: 1047 VQQDHLWVNLSPSVRGRVKLLEISEDVSALSDLEKHYPVGTALRVSVLDVNVDTGKLDLT 1106

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
             R       +K +D S+      I EG ++  +++KI  G   ++VQ+   + G +   +
Sbjct: 1107 ARYLG---GNKPLDWSS------IKEGMMIPAKVTKISEG--KVIVQLSETILGSISLAD 1155

Query: 1294 LKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1353
            + +      +  ++    V+  VL +  + +    + LS R S    SS    D+     
Sbjct: 1156 MADDFDKADVKNFNTDSIVRVCVLSVDHSNK---KIRLSTRPSRILDSSAKVRDV----- 1207

Query: 1354 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1413
                 ++   DL      +G+V NV   G +I L     A+  +S+LSD +V+  +K F 
Sbjct: 1208 ----EVKSAADLRVGGKYRGFVTNVADNGVYIHLGGTAVARARISDLSDEFVKDWKKGFT 1263

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            + +LV G+++SV+  + ++ + LK S     ++  I +  +   G+ V G +++V  YG 
Sbjct: 1264 VHQLVKGKIMSVDLDTNQISINLKKSVLLGTAKKTIADYKD---GEFVDGHVRKVTEYGC 1320

Query: 1474 FITIENT-NLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1531
            FI I+ + N+ GLCH S++S +  D +   ++  G+ VK KIL VD++K RIS G+K+SY
Sbjct: 1321 FIVIDGSDNVSGLCHKSQMSNEKADVDPSKLFGEGDLVKAKILSVDRKKGRISFGLKASY 1380

Query: 1532 FKNDADNLQMSSEEESDEAIEEVGSYNRSSL------------LENSSVAVQDMDMESED 1579
            F+N  D   +  E   ++ I                       L+++S A   + +   D
Sbjct: 1381 FRNLPDEELVPKESTEEQLIISADEDEEMEDEEEEEEEEGGVKLDSASTAADGVTITGID 1440

Query: 1580 GGSLVLAQIESRASVPPLEVN-----LDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAK 1634
              S       S+ + P    +     +DD  PD     S+++G  D  K   +K N    
Sbjct: 1441 RPS---TSFFSKFNKPNWTADAAVSAMDDLFPDDAPSDSEDEG--DSTKKQKKKKN---- 1491

Query: 1635 KKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1694
                      I+      L+   P++  ++ERL+ + PN S +W+ YMAF+++  D+  A
Sbjct: 1492 ---------AIKVDLTGDLDTRQPQSASDYERLLLADPNDSLLWMSYMAFLVANGDIVTA 1542

Query: 1695 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1754
            R+I+ERA++ I+ R+E+ KLN+W+A  NLE E+G P  E +   F+ A QY D KK+H  
Sbjct: 1543 RAISERAVKKIDHRKEDSKLNVWLARLNLELEFGTP--ETLEVAFKSACQYNDGKKIHQG 1600

Query: 1755 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLP 1813
            L+ +Y +T +++ ADEL   MIKKF    K+W+  +  ++ K + +  + ++ RAL ++ 
Sbjct: 1601 LVSVYIQTGKHEQADELFQSMIKKFSQDEKIWINYMTYMMEKNRGDDARIMLSRALQAIQ 1660

Query: 1814 RHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-GDVDLI 1871
              K H     + A LE+K+G  ++GR++FE +LS YPKR D+W++Y+D E +  G +D++
Sbjct: 1661 DTKVHPGLTLKFAQLEYKSGEIEKGRTLFEKLLSAYPKRLDIWNVYIDIEAKQEGGIDVV 1720

Query: 1872 RGLFERAISLS-LPPKKMKFLFKKYLEYEK--SVGEEERIEYVKQKAMEY 1918
            R LF R ++   L  KK   +F K++E E+  + G+++R ++V  +A+EY
Sbjct: 1721 RRLFPRVLATGKLNAKKANGVFNKWMELEEKFAPGDKKRKDHVIAQAVEY 1770



 Score =  233 bits (594), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 248/896 (27%), Positives = 406/896 (45%), Gaps = 76/896 (8%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKN-------SKKQINDAVEAQDLALPPDDDVPV 53
           MA   + S  K + D PKF K  K   K        ++++  +A   Q      + D P 
Sbjct: 1   MANKRKDSPSKGAADIPKFTKRQKTGPKEPTASKTPAQQEPTEASTMQSSLRKSNKDEPS 60

Query: 54  FPRGGGHSLTQRERDEI--HAEVDAEFEA-VERGLHKKNKKKKKKTERKANETVDDLGSL 110
           FPRGG  +LT  E  E+   A  +A FE   E+     +K  KK+  R +          
Sbjct: 61  FPRGGASALTPLEYKEVVNEATREALFETKAEKAPTAADKSPKKR--RTSAAKGSSSKKH 118

Query: 111 FGDGISGKLPRYA-NKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADA 166
               +  + P     +++ K +  G  ++G ++++ +KD+ I LP  L G   L   ++ 
Sbjct: 119 KKGEVEDEEPEIKIEQLSYKKLVQGQLVFGFISKITKKDVAIALPNNLVGYAPLTSISEQ 178

Query: 167 LDPILDNEIEANEDNL----------------LPTIFHVGQLVSCIVLQLDDDKKEIGKR 210
               L   +E +ED +                L  +F V Q V   V+ +       G++
Sbjct: 179 YTNQLQASLEQDEDGMDIDKDNAEETEAEIPGLDMLFEVNQPVRAYVMNVSTGGTGSGEK 238

Query: 211 K----IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL 266
           K    I LSL  +L   G++   + +G+ L A VKSIED+G+I+  GL   +GF+ +++ 
Sbjct: 239 KQRKHIELSLLPTLTNPGITKTEIVKGITLQASVKSIEDNGFIMDLGLDFVSGFMGKSDC 298

Query: 267 AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD-PDTVSKCVTKDLK---GISIDLLVPG 322
                  +K G      V  +    KVV L+SD   ++     KD     G +ID  +PG
Sbjct: 299 GAPPNT-IKVGRTFLCHVLGLASGGKVVQLASDFHKSIKGKSGKDAAVGDGPTIDCFLPG 357

Query: 323 MMVS-TRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
            M S   V  + +NG++ + +     TVD+FH    F +   +  Y     +  R+L   
Sbjct: 358 TMASKALVTDVQDNGLVCTVMGSIDVTVDLFH-SGCFSSEVLQTKYKAGNHLTVRLLASI 416

Query: 382 PTS---RAVG--LT----LNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 432
           P S   +  G  LT    + P     +   S + +G I   + V  +  G+GL+L+I   
Sbjct: 417 PGSDNKKFAGSLLTHVKEMGPQTQSGKLALSKLPIGAIKSDAAVKHIIPGVGLILNIGLG 476

Query: 433 PVSTPAYVTISDVAEEEVRKL--EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
             +T  +V IS ++++++  +     YK GS   +RIL +  ++GL    ++        
Sbjct: 477 --NTMVFVHISRISDKKIDSILTTGPYKVGSKHAIRILDYNSMDGLLLASMEPKILSQRY 534

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
               DVKPG VVKGK+      G +V+   G++A  P  HMS+  +  P KKF+ GA + 
Sbjct: 535 LRMEDVKPGDVVKGKISRFVGGGMLVEVEEGLEAYVPEMHMSDIVLQHPEKKFREGAAVK 594

Query: 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            R+L V   S+RI +T KK +V S+  + + Y +  +   T G I K+   G  + FY  
Sbjct: 595 GRILRVDTDSRRIKMTLKKAIVNSEGPVFADYIDVEEDEETPGTIVKLMPTGAILEFYGE 654

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-- 666
           V+GF P SE+      +P   + VGQ +   ++SS P  +++ LS        S++    
Sbjct: 655 VRGFLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVRLSCRSSQADSSKEKAEA 714

Query: 667 ---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH---ATVMKSVIKP 720
              + LGS+V G + +   N  VV  +  G  KG I    L D  +    AT  K  ++ 
Sbjct: 715 LQNIALGSIVEGSI-IEKSNDDVVLSLQDGI-KGLIVLGQLTDGSKEKNLATFKK--LRA 770

Query: 721 GYEFDQLLVL-DNESSNLL-LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETG 776
           G +   L+VL  +E  N++ LS+K SL+ +++   L      +   S V G+V  I   G
Sbjct: 771 GQKLVDLVVLRKDEMRNIVYLSSKPSLVKASKSDTLIKSFLDVKIGSAVAGFVKEITHFG 830

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSK-TYYVGQSVRSNILDVNSETGRITLSLK 831
            FV F+  +T   PR KA+  +  DL    Y+  QS+   + D+     + TLSL+
Sbjct: 831 VFVAFIDGITALLPR-KALPKEVEDLPDFGYHRLQSITCYVTDIIPSREQFTLSLR 885



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 141/284 (49%), Gaps = 31/284 (10%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            +  GD+V G+IS+ + G  G++V++   L   V    + +I +  P   + EG  VK ++
Sbjct: 540  VKPGDVVKGKISRFVGG--GMLVEVEEGLEAYVPEMHMSDIVLQHPEKKFREGAAVKGRI 597

Query: 1317 LEISRTVRGTFHVELSLRSSL---DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            L +    R    ++++L+ ++   +G    +  D+  D +TPG     I  L P      
Sbjct: 598  LRVDTDSR---RIKMTLKKAIVNSEGPVFADYIDVEEDEETPGT----IVKLMPT----- 645

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
                    G  +    ++   + +S +S+ +++ P + F +G+ +   V+S +P+ K+V 
Sbjct: 646  --------GAILEFYGEVRGFLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVR 697

Query: 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            ++ ++S +  +S+ +   L N+ +G IV G I    +  + +++++  + GL  + +L++
Sbjct: 698  LSCRSSQA-DSSKEKAEALQNIALGSIVEGSIIEKSNDDVVLSLQD-GIKGLIVLGQLTD 755

Query: 1494 DHVD-NIETI--YRAGEK-VKVKILKVDKEKRRISLGMKSSYFK 1533
               + N+ T    RAG+K V + +L+ D+ +  + L  K S  K
Sbjct: 756  GSKEKNLATFKKLRAGQKLVDLVVLRKDEMRNIVYLSSKPSLVK 799



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 24/235 (10%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
            ++ED+ P  +V+G +      G  + +   L+A V   ++SD  ++ PEK+F  G  V G
Sbjct: 536  RMEDVKPGDVVKGKISRFVGGGMLVEVEEGLEAYVPEMHMSDIVLQHPEKKFREGAAVKG 595

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITI 1477
            R+L V+  S+R+++TLK    +    SE     +  ++   +   G I ++   G  +  
Sbjct: 596  RILRVDTDSRRIKMTLK----KAIVNSEGPVFADYIDVEEDEETPGTIVKLMPTGAILEF 651

Query: 1478 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1537
                + G   VSE+SE  + +    ++ G+ + V ++  D  ++++ L  +SS       
Sbjct: 652  YG-EVRGFLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVRLSCRSS------- 703

Query: 1538 NLQMSSEEESDEAIEEV--GSYNRSSLLENSSVAVQDMDMESEDG--GSLVLAQI 1588
              Q  S +E  EA++ +  GS    S++E S+    D+ +  +DG  G +VL Q+
Sbjct: 704  --QADSSKEKAEALQNIALGSIVEGSIIEKSN---DDVVLSLQDGIKGLIVLGQL 753



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 70/352 (19%), Positives = 151/352 (42%), Gaps = 17/352 (4%)

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG +V  ++   +  G+++         V   H+ +     + +  + +   V  RIL V
Sbjct: 542 PGDVVKGKISRFVGGGMLVEVEEGLEAYVPEMHMSDIV-LQHPEKKFREGAAVKGRILRV 600

Query: 381 DPTSRAVGLTLNPYLLHNRAP--PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 438
           D  SR + +TL   ++++  P    ++ V +  +    +      G +L+          
Sbjct: 601 DTDSRRIKMTLKKAIVNSEGPVFADYIDVEEDEETPGTIVKLMPTGAILEFYG---EVRG 657

Query: 439 YVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG---LATGILKASAFEGLVFTHSD 495
           ++ +S+++E  ++   + +K G  + V ++    +E    L+    +A + +       +
Sbjct: 658 FLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVRLSCRSSQADSSKEKAEALQN 717

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK---PGKKFKVGAELVFR 552
           +  G +V+G +I   +   ++    G+K L  L  +++    K     KK + G +LV  
Sbjct: 718 IALGSIVEGSIIEKSNDDVVLSLQDGIKGLIVLGQLTDGSKEKNLATFKKLRAGQKLVDL 777

Query: 553 VLGVKSKR---ITVTHKKTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
           V+  K +    + ++ K +LVK+  +  ++ S+ +        G++ +I   G FV F +
Sbjct: 778 VVLRKDEMRNIVYLSSKPSLVKASKSDTLIKSFLDVKIGSAVAGFVKEITHFGVFVAFID 837

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
           G+    PR  L  +    P   YH  Q + C +   IP+  +  LS   +PT
Sbjct: 838 GITALLPRKALPKEVEDLPDFGYHRLQSITCYVTDIIPSREQFTLSLRPQPT 889



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 120/274 (43%), Gaps = 40/274 (14%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGY 722
           VK G +V G +       ++V V  +G  +  +P  H++D    H E      + +K   
Sbjct: 540 VKPGDVVKGKISRFVGGGMLVEV-EEGL-EAYVPEMHMSDIVLQHPEKKFREGAAVK--- 594

Query: 723 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
              ++L +D +S  + ++ K +++NS   + +D   +  +    G +  ++ TG  + F 
Sbjct: 595 --GRILRVDTDSRRIKMTLKKAIVNSEGPVFADYIDVEEDEETPGTIVKLMPTGAILEFY 652

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 842
           G + GF P S+  +    D  + + VGQ++  +++  +    ++ LS + S   S+    
Sbjct: 653 GEVRGFLPVSEMSEAFIKDPMEHFKVGQTLNVHVISSDPMEKKVRLSCRSSQADSS---- 708

Query: 843 MQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG 902
                  +EK   LQ+               +GS++EG + E ++  VV+S ++   + G
Sbjct: 709 -------KEKAEALQN-------------IALGSIVEGSIIEKSNDDVVLSLQDG--IKG 746

Query: 903 FITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
            I   QL   + E      A    +   ++LVDL
Sbjct: 747 LIVLGQLTDGSKEKN---LATFKKLRAGQKLVDL 777



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 163/394 (41%), Gaps = 35/394 (8%)

Query: 115  ISGKLPRY---ANKITLK--------NISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA 163
            +SGKLP +   A ++T K        ++         V  V +  L + L   +RG  + 
Sbjct: 1007 VSGKLPTFELSAKQVTGKANSLVKYSDLKKEETYLAFVNNVQQDHLWVNLSPSVRGRVKL 1066

Query: 164  ADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK 223
             +     +  ++ A  D  L   + VG  +   VL ++ D       K+ L+ R     K
Sbjct: 1067 LE-----ISEDVSALSD--LEKHYPVGTALRVSVLDVNVDTG-----KLDLTARYLGGNK 1114

Query: 224  GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVK---PGLL 279
             L   +++EGM++ A V  I +   I+     +  G +   ++A++    DVK      +
Sbjct: 1115 PLDWSSIKEGMMIPAKVTKISEGKVIVQLS-ETILGSISLADMADDFDKADVKNFNTDSI 1173

Query: 280  LQGVVRSIDRTRKVVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
            ++  V S+D + K + LS+ P  +  S    +D++  S   L  G      V ++ +NGV
Sbjct: 1174 VRVCVLSVDHSNKKIRLSTRPSRILDSSAKVRDVEVKSAADLRVGGKYRGFVTNVADNGV 1233

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH 397
             +           I  L + F   +WK  +  H+ V  +I+ VD  +  + + L   +L 
Sbjct: 1234 YIHLGGTAVARARISDLSDEF-VKDWKKGFTVHQLVKGKIMSVDLDTNQISINLKKSVLL 1292

Query: 398  NRAPPS--HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
              A  +    K G+  D       + G  +++D  S  VS   + +     + +V    K
Sbjct: 1293 GTAKKTIADYKDGEFVDGHVRKVTEYGCFIVID-GSDNVSGLCHKSQMSNEKADVDP-SK 1350

Query: 456  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGL 489
             + EG  V+ +IL     +G  +  LKAS F  L
Sbjct: 1351 LFGEGDLVKAKILSVDRKKGRISFGLKASYFRNL 1384



 Score = 44.7 bits (104), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 104/264 (39%), Gaps = 48/264 (18%)

Query: 697  GTIPTEHLADHLEHATV----MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL 752
            G+I    +AD  + A V      S+++       +L +D+ +  + LS + S I  +   
Sbjct: 1149 GSISLADMADDFDKADVKNFNTDSIVRVC-----VLSVDHSNKKIRLSTRPSRILDSSAK 1203

Query: 753  PSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 807
              D     A+ +       G+V N+ + G ++   G     A  S   D    D  K + 
Sbjct: 1204 VRDVEVKSAADLRVGGKYRGFVTNVADNGVYIHLGGTAVARARISDLSDEFVKDWKKGFT 1263

Query: 808  VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
            V Q V+  I+ V+ +T +I+++LK+S              LL             G+  K
Sbjct: 1264 VHQLVKGKIMSVDLDTNQISINLKKSV-------------LL-------------GTAKK 1297

Query: 868  WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSV 919
             +  +  G  ++G V +  ++G  +  +   +V G     Q++    +         G +
Sbjct: 1298 TIADYKDGEFVDGHVRKVTEYGCFIVIDGSDNVSGLCHKSQMSNEKADVDPSKLFGEGDL 1357

Query: 920  IQAAILDVAKAERLVDLSLKTVFI 943
            ++A IL V + +  +   LK  + 
Sbjct: 1358 VKAKILSVDRKKGRISFGLKASYF 1381


>gi|451995534|gb|EMD88002.1| hypothetical protein COCHEDRAFT_1183202 [Cochliobolus heterostrophus
            C5]
          Length = 1784

 Score =  308 bits (788), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 239/887 (26%), Positives = 454/887 (51%), Gaps = 84/887 (9%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 1121
            G+L+   +  +K  +L ++      GRI ++E+ ++  ++ +     ++FK+  T+ AR+
Sbjct: 927  GTLMTVRVRSVKDTQLNVELAANVPGRISVSELFENWDSIPDKKRPTAHFKMNDTIQARV 986

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV------SIGQRVTGYVYK 1173
            + + +  + +  FL   S   +  T  E+ +K   +  E DV      + G     ++  
Sbjct: 987  LGRHDPRNFR--FLPITSRSSNKTTTYEMTAKTEEIKSEADVLSLDKVTTGSSYIAFINN 1044

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            + +    + IS +++ ++   D   +  +L + ++ F +G A+   V +++     L L 
Sbjct: 1045 IADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGSALKVRVKAVDAVNGKLDLT 1104

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
                   ++ K++ + +      +  G ++  R++K+      +VVQI   +   +   +
Sbjct: 1105 A---ASTVTGKSLSLQD------LKVGHVLPARVTKLHDA--SIVVQINESIAAPIFMEQ 1153

Query: 1294 LKNICVSDPLSGYDEGQ---FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1350
            L +         YD+ Q   FV   VL +         +++ + +   G+S+  S  LS+
Sbjct: 1154 LAD--------DYDKAQPKNFVVGDVLRVCV-------IDIDIPNKKLGLSARPSRVLSS 1198

Query: 1351 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1410
             +      +     L  N +V+G+VK++ + G ++ L   ++A V +S+LSD Y++  + 
Sbjct: 1199 SLPVKDPEITDRAQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSDEYIKDWKS 1258

Query: 1411 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1470
             F + +LV G+V+S +   +  +++LKTS  +T    E  + +NL +G IV  +++ VE 
Sbjct: 1259 AFHVDQLVTGKVISNKDDQRNPQLSLKTSVIKT-DYVEPLDFANLKIGQIVTAKVRHVED 1317

Query: 1471 YGLFITIENTNLV-GLCHVSELSEDHVDN--IETIYRAGEKVKVKILKVDKEKRRISLGM 1527
            YG+F+ ++N+N V GLCH+S++++  VD   ++ +Y+  + VK K++KVD + R++S  +
Sbjct: 1318 YGVFLIVDNSNNVSGLCHISQIADALVDKEKLKDMYKKDDVVKAKVIKVDPKSRKVSFTL 1377

Query: 1528 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES----EDGGSL 1583
            K S  K+  ++ +M  E+ SD    E G  +    L++      D+DM S    E    +
Sbjct: 1378 KYSQVKDQGEDEEM--EDASDVEQSEDGYSDGGIELDD------DVDMRSVKSAESDDDI 1429

Query: 1584 VLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQ 1643
             LA  +S       + + +DE      G+S + G      T+D    + A + E E+   
Sbjct: 1430 ELADADSS------DESDNDESKATAKGLSTS-GFDWTGATLDFDQQKGAAESESEDDAP 1482

Query: 1644 EIRAA-------EERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1694
            + +         E+R  + DA  P++  ++ERL+   PNS+ +W++YM F   + ++EKA
Sbjct: 1483 KKKKKSKKATIKEDRTGDLDAYGPQSVADYERLLLGQPNSAELWVRYMVFQREVNEIEKA 1542

Query: 1695 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1754
            R IA RAL TIN REE EKL++W A  +LEN++ +  ++A+  VF+ A Q  D +++H  
Sbjct: 1543 RQIARRALATINPREEKEKLDVWTALLHLENDFSS--DDAINAVFKEACQNNDEREIHER 1600

Query: 1755 LLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQQQEG----VQAVVQRA 1808
            ++ +Y  + +   ADEL   M+K   F    K WL     L+   Q       +A++QRA
Sbjct: 1601 MIKIYISSGKIDKADELYQSMMKNKSFTADPKFWLSYAAFLMDVIQPPSPARARALLQRA 1660

Query: 1809 LLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866
              S+   +H     + A LEFK  NG  +RGR++FEG++  + K+ D+W +YL  E   G
Sbjct: 1661 TQSVAAAQHRYLTQKFAALEFKSPNGDTERGRTIFEGLVDTFAKKGDVWDMYLMLEQSHG 1720

Query: 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1913
            + D +R LFER   +     +++ +FKK+ E+E SVG ++ +E VK+
Sbjct: 1721 EADKVRDLFERMTKVG-KSSRIRGVFKKWAEWENSVGNKKGVEKVKK 1766



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 236/898 (26%), Positives = 391/898 (43%), Gaps = 89/898 (9%)

Query: 2   AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHS 61
           A  S+K +  S     K  K+  +Q   +K ++  A  A   ++  D++   FPRGG   
Sbjct: 12  ATPSKKPKGASGDRSAKRRKSDVDQQSPAKAKLESA--APPTSIFKDEEKKSFPRGGASV 69

Query: 62  LTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKL 119
           LT  E  +I   A  D  FE          +  +K+      E  +D+GS   +  S   
Sbjct: 70  LTPLEHKQIQIKANQDVLFE----------QSGQKRPGGDDGEGYNDMGSEDDEKKSAPK 119

Query: 120 PRYANKITLKNI-SAGMK--------LWGVVAEVNEKDLVICLPGGLRG---LARAADAL 167
            +       K    +G K        L   + +++ +DLV+ LP  L G   L   +D L
Sbjct: 120 SKKKVTKKSKKTHESGEKEDVVKVETLSYKITDISHQDLVLALPNNLVGYVPLTAVSDKL 179

Query: 168 DPIL---------DNEIEANEDNL----LPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIW 213
           +  L         D E  +++D+     L  +F VGQ L +CI     +  K   ++++ 
Sbjct: 180 NERLEKLLKEDESDKEEGSDKDDFEDVDLKDLFSVGQYLRACITATSSEGAK--ARKRLE 237

Query: 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT--GFLPRNNLAENS- 270
           LS+   L+  GL+   +    ++ A V S EDHG ++  GL   T  GFLP+  L  N  
Sbjct: 238 LSIEPKLVNTGLTKRKIPVNGMIQASVVSNEDHGLVMDLGLNDATLKGFLPKGELGPNLL 297

Query: 271 GIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVST 327
              V+ G +   ++  ++   ++V LS+D  T +  +TK     +  +ID+ +PG  V  
Sbjct: 298 HSKVQEGAVFMCLITGLNSDGRIVKLSAD-HTKAGNLTKGNTLTEAPTIDVFLPGTAVDL 356

Query: 328 RVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--R 385
            V     N +    L     T D +H   T   T+    +    KV AR+LF  P S  R
Sbjct: 357 LVTENTPNTITGKILGLIDATADAYHSGATEKATDMSQKHKIGSKVKARVLFTCPGSDPR 416

Query: 386 AVGLTLNPYLL----------HNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
            VG++L  ++L            R PP   + +  I + +KVV+V    G   D+    V
Sbjct: 417 KVGVSLLDHVLSLSTRMSGKPKERKPPIDLLPISTIVESAKVVKVAPSQGAFFDLGIKDV 476

Query: 435 STPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVF 491
               +  IS +++++V  L ++   +K  S  + RI+G+  L+GL    L+    +    
Sbjct: 477 V--GFAHISRLSDDKVDILSEEAGAFKLDSKHKARIVGYNALDGLFQLSLEKKVIDQPFL 534

Query: 492 THSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
              D+K G VVKGKV  +  D  GA   +V    G+  L P  H+++  +  P +KF+ G
Sbjct: 535 RIEDIKAGEVVKGKVHKLFADKTGATAVLVHLSDGITGLVPEMHLADVRLQHPERKFREG 594

Query: 547 AELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
             +  RVL  +  R  I +T KK+LV S++   ++Y   ++     G + ++ ++G  V+
Sbjct: 595 LPVTARVLYTEPARHQIHLTLKKSLVNSEVKPWTNYDMISEGATGPGILVRVRRNGATVQ 654

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           FYN V+ + P +E+      + +  +H GQVV  R++ S+ A  R  L     P  V  +
Sbjct: 655 FYNRVRAWLPVAEMSEAFIHDATRHFHAGQVVNVRVL-SVDAKERQLLVSCKDPAAVDTN 713

Query: 665 -----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSV 717
                + +  G +V G V V   +      I  G  KG +   HL D  E   +  MK  
Sbjct: 714 KEAAFNALNPGGIVKGTV-VEKSDESATLDIGNGV-KGILRLGHLTDGSEKKDISTMKK- 770

Query: 718 IKPGYEFDQLLVLD--NESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNII 773
           I+ G   + L++L    +S    +S K SL   AQ  +L      +     VHG+V  I+
Sbjct: 771 IRVGGTLEDLVILTKHGKSKTATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGIL 830

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               FV     ++G   RS+  +   A         QS+ + +  V+   G   LS+K
Sbjct: 831 SDKVFVELGNGISGALFRSQLPEDMAAAPEFGLRKDQSITARVTHVDVGKGLFWLSMK 888



 Score = 54.3 bits (129), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 1361 KIEDLSPNMIVQG-----YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
            +IED+    +V+G     +     +    + LS  +   V   +L+D  ++ PE++F  G
Sbjct: 535  RIEDIKAGEVVKGKVHKLFADKTGATAVLVHLSDGITGLVPEMHLADVRLQHPERKFREG 594

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYG 1472
              V  RVL  EP   ++ +TLK    ++   SE+   +N  +   G    G + RV   G
Sbjct: 595  LPVTARVLYTEPARHQIHLTLK----KSLVNSEVKPWTNYDMISEGATGPGILVRVRRNG 650

Query: 1473 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
              +   N  +     V+E+SE  + +    + AG+ V V++L VD ++R++ +  K
Sbjct: 651  ATVQFYN-RVRAWLPVAEMSEAFIHDATRHFHAGQVVNVRVLSVDAKERQLLVSCK 705



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 109/507 (21%), Positives = 211/507 (41%), Gaps = 57/507 (11%)

Query: 1039 LLLKAISETETSSSKRAKKKSSYD---VGSLVQ-AEITEIKP-----LELRLKFGIGFHG 1089
            LL   +S +   S K  ++K   D   + ++V+ A++ ++ P      +L +K  +GF  
Sbjct: 422  LLDHVLSLSTRMSGKPKERKPPIDLLPISTIVESAKVVKVAPSQGAFFDLGIKDVVGF-- 479

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE 1149
              HI+ ++DDK +++      FK+     ARI+   N  D     L++LS++  ++    
Sbjct: 480  -AHISRLSDDKVDILSEEAGAFKLDSKHKARIVG-YNALDG----LFQLSLEKKVI---- 529

Query: 1150 IGSKLLFEECDVSIGQRVTGYVYKV-DNEWALLTISRHLKAQL--FILDSAYEPSELQEF 1206
               +      D+  G+ V G V+K+  ++     +  HL   +   + +       LQ  
Sbjct: 530  --DQPFLRIEDIKAGEVVKGKVHKLFADKTGATAVLVHLSDGITGLVPEMHLADVRLQHP 587

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            +R+F  G  VT  VL     +  + L L+  +  ++ +    +N +M   I EG    G 
Sbjct: 588  ERKFREGLPVTARVLYTEPARHQIHLTLK--KSLVNSEVKPWTNYDM---ISEGATGPGI 642

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGT 1326
            + ++     G  VQ    +   +   E+    + D    +  GQ V  +VL +    R  
Sbjct: 643  LVRVRR--NGATVQFYNRVRAWLPVAEMSEAFIHDATRHFHAGQVVNVRVLSVDAKERQL 700

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1386
                         +S  + + + T+ +           L+P  IV+G V   + +   + 
Sbjct: 701  L------------VSCKDPAAVDTNKEAA------FNALNPGGIVKGTVVEKSDESATLD 742

Query: 1387 LSRKLDAKVLLSNLSDGYVE---SPEKEFPIGKLVAGRV-LSVEPLSKRVEVTLKTSDSR 1442
            +   +   + L +L+DG  +   S  K+  +G  +   V L+    SK   V+ K S  +
Sbjct: 743  IGNGVKGILRLGHLTDGSEKKDISTMKKIRVGGTLEDLVILTKHGKSKTATVSNKPSLRK 802

Query: 1443 TASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1501
             A  S++  ++ +L  G+ V G ++ + S  +F+ + N  + G    S+L ED     E 
Sbjct: 803  DAQASKLAISIEDLQAGETVHGFVRGILSDKVFVELGN-GISGALFRSQLPEDMAAAPEF 861

Query: 1502 IYRAGEKVKVKILKVDKEKRRISLGMK 1528
              R  + +  ++  VD  K    L MK
Sbjct: 862  GLRKDQSITARVTHVDVGKGLFWLSMK 888



 Score = 47.4 bits (111), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 177/447 (39%), Gaps = 84/447 (18%)

Query: 538  KPGKKFKVGAELVFRVLG-------------VKSKRITVTHKKTL----VKSKLAILSSY 580
            +P   FK+   +  RVLG              +S   T T++ T     +KS+  +LS  
Sbjct: 971  RPTAHFKMNDTIQARVLGRHDPRNFRFLPITSRSSNKTTTYEMTAKTEEIKSEADVLS-- 1028

Query: 581  AEATDRLITH----GWITKIEKHGCFVRFYNGVQGFAPRSEL--GLDPGCEPSSMYHVGQ 634
                D++ T      +I  I     +V     ++G     +L   L+   +    + VG 
Sbjct: 1029 ---LDKVTTGSSYIAFINNIADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGS 1085

Query: 635  VVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYV--- 689
             +K R+ +    + +++L+     T   +S  DL K+G ++   V  +   ++VV +   
Sbjct: 1086 ALKVRVKAVDAVNGKLDLTAASTVTGKSLSLQDL-KVGHVLPARVTKLHDASIVVQINES 1144

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLIN 747
            IA       I  E LAD  + A     V+    +  ++ V+D +  N  L LSA+ S + 
Sbjct: 1145 IA-----APIFMEQLADDYDKAQPKNFVVG---DVLRVCVIDIDIPNKKLGLSARPSRVL 1196

Query: 748  SAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
            S+  LP      +D + +  N VV G+V +I   G +VR    +  +   S   D    D
Sbjct: 1197 SSS-LPVKDPEITDRAQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSDEYIKD 1255

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 861
                ++V Q V   ++    +     LSLK S         ++  ++     A L+    
Sbjct: 1256 WKSAFHVDQLVTGKVISNKDDQRNPQLSLKTSV--------IKTDYVEPLDFANLK---- 1303

Query: 862  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE------ 915
                        IG ++  KV    D+GV +  +  ++V G     Q+A A V+      
Sbjct: 1304 ------------IGQIVTAKVRHVEDYGVFLIVDNSNNVSGLCHISQIADALVDKEKLKD 1351

Query: 916  ---SGSVIQAAILDVAKAERLVDLSLK 939
                  V++A ++ V    R V  +LK
Sbjct: 1352 MYKKDDVVKAKVIKVDPKSRKVSFTLK 1378



 Score = 43.9 bits (102), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 24/186 (12%)

Query: 667 VKLGSLVSGVV-----DVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 720
           +K G +V G V     D     AV+V+ ++ G + G +P  HLAD  L+H         P
Sbjct: 539 IKAGEVVKGKVHKLFADKTGATAVLVH-LSDGIT-GLVPEMHLADVRLQH---------P 587

Query: 721 GYEFDQLL-----VLDNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
             +F + L     VL  E +   + L+ K SL+NS  +  ++   I   +   G +  + 
Sbjct: 588 ERKFREGLPVTARVLYTEPARHQIHLTLKKSLVNSEVKPWTNYDMISEGATGPGILVRVR 647

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             G  V+F  R+  + P ++  +    D ++ ++ GQ V   +L V+++  ++ +S K  
Sbjct: 648 RNGATVQFYNRVRAWLPVAEMSEAFIHDATRHFHAGQVVNVRVLSVDAKERQLLVSCKDP 707

Query: 834 CCSSTD 839
               T+
Sbjct: 708 AAVDTN 713


>gi|320589974|gb|EFX02430.1| rRNA biogenesis protein [Grosmannia clavigera kw1407]
          Length = 1753

 Score =  303 bits (777), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 326/1369 (23%), Positives = 626/1369 (45%), Gaps = 164/1369 (11%)

Query: 608  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS-- 662
            GV GF   S +    +D   E S  + VG   + R++          +SF  K    S  
Sbjct: 474  GVPGFVHISRVKDGKVDALYESSGPFKVGSTHRGRVIGYNAVDGIFLVSFEQKVLEQSFI 533

Query: 663  --EDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMK 715
              ED  V +G +V+G +   ++  N +  ++  IA G + G +P  H +D  L+H    +
Sbjct: 534  RIED--VPVGDVVTGHIKKLLLNQNGISGLIVEIADGIA-GLVPEIHFSDIKLQHP---E 587

Query: 716  SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
               + G +   ++L +D  +    L+ K +L+NS          +       G V N++ 
Sbjct: 588  KKFREGMKVTARVLSIDPANHQFRLTLKKTLVNSDIPPVKSFDDLSVGQQCLGTVVNVVP 647

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             G +V+F G L GF P ++  +    D  + +  GQ+V   +L  + +  ++ +S K   
Sbjct: 648  IGAYVQFYGDLRGFLPVAEMSEAFIRDPKEHFRQGQAVNVRVLRFDPDLNKLVVSCKDPS 707

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGS-ELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
                D     +   +   ++    +KH+ S E++ VE  +  ++  G + + +       
Sbjct: 708  AFGVDKRQALQDLQICSIVSAKAIAKHDDSVEVEIVENGLKATLPIGHLSDRSP------ 761

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
                         +Q A   +  G V+ +  +LD  +  R++ +S K   I   +E    
Sbjct: 762  -----------AKNQAALKRIHIGQVLPELLVLDKHEGRRVITVSQKPSLIAASKEG--- 807

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFP 1011
            +     +  R  S   G  + +      V+    +V  LP+        +  D+   K  
Sbjct: 808  KLLVNMEDARTGSLVTGFVRNITPTAAFVQFAANIVALLPKPLMPRTAQAEPDFGLHK-- 865

Query: 1012 QKQFL--------NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD- 1062
              Q L        NG+     V +LPS   A       KA + + T  +      +++D 
Sbjct: 866  -SQTLALKIISVENGR----LVASLPSDVPAEEKDTGEKAGAGSRTLLNPVDSSLATFDD 920

Query: 1063 --VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVT 1118
              +G + +A IT +K  +L ++      GR+ ++E+ D   +V   ++   NF+ GQ + 
Sbjct: 921  LHLGQITKARITSVKNTQLNVRLADNVSGRVDMSEIFDSWDDVPDAKSPLQNFEEGQILD 980

Query: 1119 ARIIAKSNK--------PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
             RI+   +            K+  + ELSIKPS L   +    L  ++  V +G     +
Sbjct: 981  VRILGVHDAKRRVYLPITQQKRRSVLELSIKPSSLQGGKTPDILSIDK--VQVGSSWVAF 1038

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
            V         L+++ H++ +L+ ++++ + S +++ +  F +G A+   V+ ++ EK  +
Sbjct: 1039 VNNHGANCLWLSLTPHVRGRLYGMEASDDMSLVKDLEANFPVGMAIHVRVVQVDVEKGRI 1098

Query: 1231 RLVLR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
             L  R P  +G          D   + I +  ++  +++K+  G   ++VQ+   + G +
Sbjct: 1099 DLSARSPGGEG----------DLAWSSIEKNLVLPAKVTKVSDG--QVLVQLSKTVSGPL 1146

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
            H  ++ +       + Y +   ++  V+ +  + +    + LS R S    SS    D  
Sbjct: 1147 HLVDIADDFDQATTTAYFKHDIIRVSVVSVDASNK---RMRLSTRPSRVLNSSFPVED-- 1201

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
                   + +    D+ P  +++G+V+ ++ KG F+ L   + A V +++LSD +++  +
Sbjct: 1202 -------REILDFSDVKPGSVIRGFVRGISDKGVFVNLGGDVVAFVRVTDLSDSFLKDWK 1254

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1469
              F I +LV GRV +V+   K+++++LK S +   + + +  L +LH G IV G++++V 
Sbjct: 1255 AHFRIDQLVKGRVTAVKAEVKQIQMSLKAS-AIDENYAPLLTLDDLHEGQIVSGRVRKVA 1313

Query: 1470 SYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             +G FI ++N+ N+ GLCH +E+++  V                    D  K R++LG+K
Sbjct: 1314 DFGAFIVVDNSANVSGLCHRTEMADKSVR-------------------DATKLRVNLGLK 1354

Query: 1529 SSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQI 1588
              YF++++D+         ++A+   G  N +  + ++     D   ++ +GG L     
Sbjct: 1355 PKYFEDESDS--------DEDAMSVDGGDNVADDVSDNGKDGADA-AKTANGGGLSGGAF 1405

Query: 1589 ESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAA 1648
            +   +   L+    D Q D+D          D    + +++ R  K     + +   R A
Sbjct: 1406 DWTGNA--LDQENGDSQSDLD--------EEDGGALVAKRSKRSKKAAAAADID---RTA 1452

Query: 1649 EERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1708
            +   L+   P+T  ++ERL+    + S +WI+YMAF + ++++ KAR IAERA++TIN+R
Sbjct: 1453 Q---LDVRGPQTASDYERLLLGQADMSALWIEYMAFQVQVSELAKAREIAERAIKTINVR 1509

Query: 1709 EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLA 1768
            +E E+LN+W+AYFNLE EYG+  EE    VF+RA QY D ++V      +Y ++ +   A
Sbjct: 1510 QETERLNVWIAYFNLEVEYGS--EETADAVFKRACQYNDDREVFARAASIYIQSGKLNKA 1567

Query: 1769 DELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSL-PRHKHIKFISQT 1824
            DEL   M KKF   S ++W+     L     +  +A  ++ RA+ +L      I  +S+ 
Sbjct: 1568 DELFQTMTKKFGAQSPQIWINYAHFLHHSMHDVDRARTLLTRAVQTLGTSAATITLMSRF 1627

Query: 1825 AILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL------------GDVDL 1870
            A LEF++  G  + GR+ FE +L ++PK+ D+W   LD E  +             D  +
Sbjct: 1628 AALEFRSPVGNPEHGRTTFETLLDKWPKKHDIWDQLLDLETSVYTAEKAKGAEGKADPAV 1687

Query: 1871 IRGLFERAI-SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
            +R +FER   +  L  ++ K  F+++ ++E+  G+ +    V  +A E+
Sbjct: 1688 VRDVFERGTKAKGLKARRAKSWFQRWAKWEEQNGDAKSRARVTTRAKEW 1736



 Score =  205 bits (521), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 211/836 (25%), Positives = 370/836 (44%), Gaps = 74/836 (8%)

Query: 52  PVFPRGGGHSLTQRERDEIH--AEVDAEFEA----VERGLHKKNKKKKKKTERKANETVD 105
           P+FPRGGG  LT  E  +I   A+ DA FE      ERG  K+ K  +K +E +   +  
Sbjct: 67  PLFPRGGGGVLTPLEYKQIQVQAKSDALFETSNGTTERGSEKRLKPNRKSSEGRPKPST- 125

Query: 106 DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LAR 162
                       +       +  K +  G  + G ++E+   ++ + LP  L G   +  
Sbjct: 126 --------AAPAEESVRIESLNYKRLVKGSLVLGQISEITPLEIAVSLPNNLVGHLSVTS 177

Query: 163 AADALDPILDNEIE--------ANEDNLLPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIW 213
            + AL   ++ E E        A+E+  + T+F +GQ +   V+   DDD ++  KR+I 
Sbjct: 178 ISQALTERIEAEAENANDDEDAAHEEVDVQTLFGLGQYIRVSVVSTEDDDAEKKKKRRIE 237

Query: 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAENSG 271
           LS R  L   GL+ + V     + A V S+ED G+++  G+      GFL +  L  +  
Sbjct: 238 LSTRPELANAGLTDQDVVRNSTVMASVISVEDRGFVMDLGIQDSDLRGFLAKKELDPSIP 297

Query: 272 ID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQ 330
            + ++PG ++  +V       KV  LS++   +           +I+  +PG  V   V 
Sbjct: 298 EERLQPGAVILCLVTGKATNGKVAQLSANKTQLGSIKNVASDATTINTFLPGTAVDVLVS 357

Query: 331 SILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVG 388
            +   G+    L +   T D+ H        +    Y    K+ AR++   PT+    V 
Sbjct: 358 EVTARGLAGKVLGHLDATADMTHSGAGGSIGDLDEKYKVASKIKARVICTFPTADNPKVA 417

Query: 389 LTLNPYLL------------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 436
           ++L P++L            H++AP   + +  I +   V + +  +GL +D+    V  
Sbjct: 418 ISLLPHILSLQQQTAGGKNVHDKAPTQALPLSTIVESCVVRKAELNVGLWVDVGVEGV-- 475

Query: 437 PAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
           P +V IS V + +V  L +    +K GS  R R++G+  ++G+     +    E      
Sbjct: 476 PGFVHISRVKDGKVDALYESSGPFKVGSTHRGRVIGYNAVDGIFLVSFEQKVLEQSFIRI 535

Query: 494 SDVKPGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 548
            DV  G VV G +  +        G IV+   G+  L P  H S+ ++  P KKF+ G +
Sbjct: 536 EDVPVGDVVTGHIKKLLLNQNGISGLIVEIADGIAGLVPEIHFSDIKLQHPEKKFREGMK 595

Query: 549 LVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           +  RVL +   + +  +T KKTLV S +  + S+ + +      G +  +   G +V+FY
Sbjct: 596 VTARVLSIDPANHQFRLTLKKTLVNSDIPPVKSFDDLSVGQQCLGTVVNVVPIGAYVQFY 655

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTR 660
             ++GF P +E+      +P   +  GQ V  R++   P   ++ +S      F +   +
Sbjct: 656 GDLRGFLPVAEMSEAFIRDPKEHFRQGQAVNVRVLRFDPDLNKLVVSCKDPSAFGVDKRQ 715

Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVI 718
             +D  +++ S+VS        ++V V ++  G  K T+P  HL+D    ++   +K  I
Sbjct: 716 ALQD--LQICSIVSAKAIAKHDDSVEVEIVENGL-KATLPIGHLSDRSPAKNQAALKR-I 771

Query: 719 KPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIE 774
             G    +LLVLD       + +S K SLI ++++  L  +       S+V G+V NI  
Sbjct: 772 HIGQVLPELLVLDKHEGRRVITVSQKPSLIAASKEGKLLVNMEDARTGSLVTGFVRNITP 831

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           T  FV+F   +    P+       +A+     +  Q++   I+ V  E GR+  SL
Sbjct: 832 TAAFVQFAANIVALLPKPLMPRTAQAEPDFGLHKSQTLALKIISV--ENGRLVASL 885



 Score = 44.7 bits (104), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
            +   SDVKPG V++G V  +   G  V   G V A   +  +S+  +      F++   +
Sbjct: 1204 ILDFSDVKPGSVIRGFVRGISDKGVFVNLGGDVVAFVRVTDLSDSFLKDWKAHFRIDQLV 1263

Query: 550  VFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
              RV  VK+  K+I ++ K + +    A L +  +  +  I  G + K+   G F+   N
Sbjct: 1264 KGRVTAVKAEVKQIQMSLKASAIDENYAPLLTLDDLHEGQIVSGRVRKVADFGAFIVVDN 1323

Query: 608  --GVQGFAPRSELG 619
               V G   R+E+ 
Sbjct: 1324 SANVSGLCHRTEMA 1337


>gi|307110620|gb|EFN58856.1| hypothetical protein CHLNCDRAFT_19641 [Chlorella variabilis]
          Length = 288

 Score =  300 bits (769), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 143/269 (53%), Positives = 200/269 (74%), Gaps = 3/269 (1%)

Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1716
            AP +  E+E+LV S+PNSS+VWI+Y AF++S+ +++KAR++A+RALQTI+ REE EK N+
Sbjct: 21   APSSITEYEQLVLSTPNSSYVWIQYFAFLISLGELDKARALADRALQTISYREEGEKFNV 80

Query: 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
            WVAY N+EN YG+  E+A + +  RAL + D ++++LA + ++ERT +  L ++ L  M 
Sbjct: 81   WVAYLNMENLYGS--EDASLALLSRALAHTDARRMYLAAVDIFERTHKEGLVEQCLKAMT 138

Query: 1777 KKFKHSCKVWLRRVQ-RLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835
            +KF  S +VWLR V+ RL     EG +  + R+L SLP+ +HI+ ISQT +LEFK G A+
Sbjct: 139  RKFSDSAEVWLRAVRYRLASGDAEGARKTLDRSLQSLPQFEHIRMISQTGLLEFKIGDAE 198

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            RGRS+FEG+L  YPKR DLWS+YLDQE+  GD   IR LFERA  L LPPKKMKFLFK+Y
Sbjct: 199  RGRSIFEGVLRNYPKRLDLWSVYLDQEVAAGDPQRIRALFERATHLQLPPKKMKFLFKRY 258

Query: 1896 LEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            L+YEK+ G    +E+VK++A+EYVE+  A
Sbjct: 259  LDYEKAHGTAAGVEHVKKRALEYVEAQAA 287


>gi|358056290|dbj|GAA97773.1| hypothetical protein E5Q_04452 [Mixia osmundae IAM 14324]
          Length = 1414

 Score =  300 bits (767), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 260/931 (27%), Positives = 449/931 (48%), Gaps = 106/931 (11%)

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK----AISETETSSSKRAKKKSSYDVG 1064
            K P+K+F  G  V   + A  S S+  ++++ LK    A       S    K + +YD  
Sbjct: 559  KHPEKRFKIGDVVKGRIFAADSESS--KIVVTLKKSLLASDLPVPQSLADVKPQQAYDA- 615

Query: 1065 SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK 1124
              V ++I E K L + L     F G   I  +++     V+NL + +K GQ +  RI+  
Sbjct: 616  --VLSKIME-KALLVDL-----FGGARAIIPISEAGQGFVDNLAALYKEGQRLQVRIMHV 667

Query: 1125 SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1184
                    + L E  +          G   L     + +GQ+    +  + N+  +L I+
Sbjct: 668  DTSAGRITASLRERDLD---------GVAALE---GLKVGQKTEAVIAALHNDNIVLEIA 715

Query: 1185 RHLKAQLFILDSAYEPS---ELQEFQRRFHIGKAVTG-HVLSINKEKKLLRLVLRPFQ-- 1238
               KA+  +  +A+         E ++R  +G+ +    V+S N +K +  L        
Sbjct: 716  PS-KARGLLSYTAHARQLGVATDELKQRIAVGQLLKDLTVVSKNTQKGIAILSSGSTSTN 774

Query: 1239 ---DGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
               +GISD         M  F  +  G+   G+I  I S   GL VQ+   L    H+T 
Sbjct: 775  SSANGISD---------MLQFESVAVGETYAGKI--IGSAPQGLHVQLSRALRALAHWT- 822

Query: 1294 LKNICVSDPLSGYDE-----GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1348
                   D L  +D      G  V C ++      R    V++SLR S+   ++  S   
Sbjct: 823  -------DVLDDFDAALPAPGTVVSCNIVGKDEAAR---RVDVSLRPSVMADNAEGS--- 869

Query: 1349 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1408
               +  P   +  I++L     ++G+V NV   G F+ + R L A+V +  L D YV   
Sbjct: 870  ---ILDP--EIISIDELRIGQKIRGFVVNVADSGLFVSVGRSLTARVQIRELFDEYVREW 924

Query: 1409 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1468
            +  F +G+LV+G +L ++P   ++E++L++   RTA++S+ N L++  VG I    IK +
Sbjct: 925  KPRFSVGQLVSGSILKLDPERNQIELSLRS--ERTAAKSDANALASYQVGQIASCVIKTI 982

Query: 1469 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            E YG F+ I +T + GLCH S+  E         ++ G+ V+ +I++VD + ++I   + 
Sbjct: 983  ERYGAFLRITDTLVSGLCHRSQFPEQGA-GWSKGFKIGQSVQARIVEVDTKSKKIGFTLL 1041

Query: 1529 SSYFKN-DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQ 1587
                ++ D   +  S+  E+DE+ +E        +++    A     +   +G   V++ 
Sbjct: 1042 DVAQEDPDISAILPSAVGEADESDDE------DLVVDLGDPAPTAEHIGPNNGHEAVISD 1095

Query: 1588 IESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRA 1647
            I S+    PL          +  G   +   +     ++  ++        +  E+E  +
Sbjct: 1096 ISSK----PLA---------LIGGFEWSTTQSAPTPALEVDSDEAESTVADDASEEETGS 1142

Query: 1648 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1707
            A       D  R     ER +  SP+SS +WI+Y++ +L   D+ +AR +A+RAL TIN 
Sbjct: 1143 A------SDGDRNVTSLERELIGSPDSSILWIQYISLLLEARDITQAREVAQRALSTINY 1196

Query: 1708 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1767
            RE+ E+ N+W A  ++EN+YG P  E +   F+ A+Q  + K++HL L  +   + ++  
Sbjct: 1197 REDEERFNVWNAILSMENQYGTP--ETLETAFKEAVQANEAKRIHLRLAEILTASNKHAQ 1254

Query: 1768 ADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFISQTAI 1826
            A+EL  + +KKF  S KVW      L ++++    + +V R++ SLP+ KH+K  ++ A 
Sbjct: 1255 AEELYQRTVKKFSQSSKVWTIFATYLHERRKSSDARELVARSMKSLPQRKHVKTAAKFAQ 1314

Query: 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886
            +EFK+G A+RGR+MFEGI+  YPKR DLW +Y+D E R  ++  +R LF+R ++  L  K
Sbjct: 1315 VEFKHGDAERGRTMFEGIIDSYPKRLDLWLVYIDMEARSQNMAAVRFLFDRLLAQKLSTK 1374

Query: 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917
            K K + KK+L  EK  G++  +E VK++A E
Sbjct: 1375 KAKSVLKKWLSLEKLHGDDASVETVKERARE 1405



 Score =  144 bits (362), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 221/856 (25%), Positives = 352/856 (41%), Gaps = 102/856 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG SLTQ E      E  AE +  E  L  ++ K K+ T+               D
Sbjct: 37  FPRGGGTSLTQMEVKTAKREAIAELDRDEE-LFARDSKAKRSTDGTDEGKHKKRRRKEKD 95

Query: 114 GISGKLPRYANKITL-------KNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARA 163
                 P  A + T+       K  + G KL  +V  V+  +L++ LP  L G   L   
Sbjct: 96  AAKAVKPDVAKQDTIRVEHLNYKRCTPGTKLLCLVVSVHALELIVSLPNELSGHIPLVNI 155

Query: 164 ADALDPIL-----DNEIEA----NEDNL--LPTIFHVGQ--LVSCIVLQLDD-------- 202
           +  L   L     D+E E+    +ED+   L  ++  GQ  + S +  +  D        
Sbjct: 156 SSGLTAQLASGHPDDESESTDEQDEDDSPDLTQMYEPGQYLIASVVACRSSDVARNTLDP 215

Query: 203 ----DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL---- 254
               D+     R++ LSL    +   L+   + +G++L   VKS+ED+GY+L   L    
Sbjct: 216 SRRGDEAYRTSRRLELSLDPKPINDDLARSDLTDGLLLPVSVKSVEDNGYVLDLRLKDEM 275

Query: 255 PSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI 314
            SF  F       E +    K   L+ G V     T +++ L+S+  T +  +  D   I
Sbjct: 276 TSFVKF-------EEAQTSRK---LIGGQVI----TARLIKLASNGRTCTLAI--DATRI 319

Query: 315 SIDL---------LVPGMMVSTRVQSILEN-GVMLSFLTYFTGTVDIFHLQNTFPTTNWK 364
                        L+PG  V+  V +++   G+ + FL +F GT+D  HL          
Sbjct: 320 RAAALATAPTLHGLLPGNQVNAIVSAVIPGRGLNVKFLGFFDGTIDHTHLV-------IG 372

Query: 365 NDYNQHKKVNARILFVD-PT---SRAVGLTLNPYLLHNRAPP--------SHVKVGDIYD 412
            +Y +  K+ AR+L+   PT   +R   L+  P++L   APP          V +G   D
Sbjct: 373 KEYKEGNKIKARLLWSSAPTLDAARTFALSALPHVL-KLAPPLLGDTLLKEAVPIGTFVD 431

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILG 469
             KV R +   GL            A+V IS V++E +  L  K   Y  G+  R R++G
Sbjct: 432 SVKVNRTESEHGLACTARLGANECAAFVHISRVSDEHLGTLSAKSGPYCPGTTHRGRVIG 491

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
              L+G     L+ S         SDV  G  VK  +  + S    V   G V A+    
Sbjct: 492 LALLDGALQISLQPSVLAQRFLRVSDVVVGEAVKATIKRITSKAMFVSVDGNVDAVVWPL 551

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
           H S+ ++  P K+FK+G  +  R+     +S +I VT KK+L+ S L +  S A+   + 
Sbjct: 552 HYSDIKLKHPEKRFKIGDVVKGRIFAADSESSKIVVTLKKSLLASDLPVPQSLADVKPQQ 611

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
                ++KI +    V  + G +   P SE G       +++Y  GQ ++ RIM    ++
Sbjct: 612 AYDAVLSKIMEKALLVDLFGGARAIIPISEAGQGFVDNLAALYKEGQRLQVRIMHVDTSA 671

Query: 648 RRINLSFMMKPTR-VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            RI  S   +    V+  + +K+G     V+  +  N  +V  IA   ++G +     A 
Sbjct: 672 GRITASLRERDLDGVAALEGLKVGQKTEAVIAALH-NDNIVLEIAPSKARGLLSYTAHAR 730

Query: 707 HLEHAT-VMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQLPSDASHIHPNS 763
            L  AT  +K  I  G     L V+   +     +LS+  +  NS+    SD       +
Sbjct: 731 QLGVATDELKQRIAVGQLLKDLTVVSKNTQKGIAILSSGSTSTNSSANGISDMLQFESVA 790

Query: 764 VVHGYVCNIIET---GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
           V   Y   II +   G  V+    L   A  +  +D   A L      G  V  NI+  +
Sbjct: 791 VGETYAGKIIGSAPQGLHVQLSRALRALAHWTDVLDDFDAALPAP---GTVVSCNIVGKD 847

Query: 821 SETGRITLSLKQSCCS 836
               R+ +SL+ S  +
Sbjct: 848 EAARRVDVSLRPSVMA 863


>gi|328850494|gb|EGF99658.1| hypothetical protein MELLADRAFT_22369 [Melampsora larici-populina
            98AG31]
          Length = 1489

 Score =  300 bits (767), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 289/998 (28%), Positives = 484/998 (48%), Gaps = 107/998 (10%)

Query: 966  KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYAS-VSDYNTQKFPQKQFLNGQSVIAT 1024
            +D+ V + V A V  +  + L LS+      + +    SD   Q  P+K+F  G  + A 
Sbjct: 543  QDVAVGEIVTAEVTRLCSSALFLSIFGGLDCVVWPDHYSDVKLQ-HPEKKFQAGMKLTAR 601

Query: 1025 VMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFG 1084
            V+ +  +     L L    +  T +S +  A  +     G +  A IT +K   L ++F 
Sbjct: 602  VLYVNPNKHRIALTLRKSLLDPTFSSITSYATAQP----GMVTDAVITRVKARHLEIEFF 657

Query: 1085 IGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSM 1144
                G I I E  +  S   E+L S+F+ G+ V  +I+  S  P  +K       I  S+
Sbjct: 658  GQTRGVIPIREAAEKFS---ESL-SDFRAGRVVKVQIL--SVDPLARK-------ILASI 704

Query: 1145 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQ-------------- 1190
                +  +  L E  +V  G  V   V  + ++  +LT+ R L  +              
Sbjct: 705  RCALDTEASKLRESGNV--GDAVFATVKTIGDDHTILTLRRRLGKRNKMGGEIPIPGLIS 762

Query: 1191 LFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1250
            L IL +      + + + + H+G  +   V++    +    L++  +  G   +  +   
Sbjct: 763  LSIL-AWRRKVTIDQLKEQLHVGDEIDDLVITAKDIQS--NLIILGYAKGSKKQKQEPET 819

Query: 1251 D----NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE---LKNICVSDPL 1303
            +    N   F   GD+V G +  I             H    + F +    +N CV    
Sbjct: 820  ERPLFNSSAF-EVGDLVTGTVLDI-------------HAKNLLMFLKKDGSENACVGQGF 865

Query: 1304 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS-LDGMSSTNSSDLSTDVDTPGKHLEKI 1362
               ++    + K   + +  R T  V L+LRSS L+     ++S++    D P   +  I
Sbjct: 866  LSIEKLATREKKNCAVVKVDRQTSKVYLTLRSSRLNRGVQKSASEVR---DRP---IVSI 919

Query: 1363 EDLSPNMIVQGYVKNVTSK-GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
            +DL     ++G+++ +  K G  + +   L AKV +S L D  +     +F +G++V+G 
Sbjct: 920  KDLKKGDKIRGFIQRICEKAGLLVRIGTNLSAKVKISELFDQDIPDWVGKFKVGQVVSGV 979

Query: 1422 VLSVEPLSKRVEVTLKTSD-SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
            +++    S+ ++++L+ +      S  +   L     G IV   I+++E YG+F+ I++ 
Sbjct: 980  IITPVKASRGIQLSLRENPFGPKVSDPKKLVLEKFQEGQIVGTTIRKIEKYGMFLAIDDA 1039

Query: 1481 NLVGLCHVSELSED-HVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1538
             + GLCHVS+LS+D  VD N    Y+ G +++  ++KVD + RRISL +K S        
Sbjct: 1040 GISGLCHVSQLSDDDEVDRNWAKKYKEGMRLQAALVKVDLKARRISLSIKPS-------- 1091

Query: 1539 LQMSSEEESDEAIEEVGSYN---------RSSLLENSSVAVQDMDMESEDGGSLVLAQIE 1589
              +  E+E D   +E  S +          S++ ++ SV   DM + S+     +  QI+
Sbjct: 1092 --IVGEQELDSGDDEDESDDEDVEEEELDHSNVEKDDSV---DMVVTSKSVNQPLAVQIQ 1146

Query: 1590 SRASVPPLEVNLDD--EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRA 1647
            +     P   N +   +    D   S ++G +DE    D   + H   +EKE  E E R 
Sbjct: 1147 APCLALPGGFNWNSTVQTRAADEQDSDSEGSSDED---DHATSNHVTGQEKEVSEPEHRN 1203

Query: 1648 AEERLLEKDAPRTP-DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1706
            +    LE  +  T   + ER +  SPNSS +WI+ M+  +  AD+ +AR   +RAL  I+
Sbjct: 1204 SSH--LENGSVTTSIADLERQLLGSPNSSLLWIQLMSCHIQQADLNEARETVKRALNGIH 1261

Query: 1707 IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1766
             REE+EKLN+W+A+ NLEN YG   EE ++KVF  A +  D K V L +  +Y  + + +
Sbjct: 1262 YREESEKLNVWIAWLNLENAYGT--EEQMMKVFGEASKANDTKTVWLKMAEIYTESGKIE 1319

Query: 1767 LADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFISQTA 1825
             A+EL  K++KKF  S K W    +  L  +QE     ++ R+L SLP+HKH+K +++ A
Sbjct: 1320 KANELYTKLVKKFSESSKAWSLYARFCLTNKQEAQTLELLARSLRSLPKHKHLKTMNKFA 1379

Query: 1826 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE-IRLGDVDLIRGLFERAISLSLP 1884
              EFK+G  +RGR++FEG+++ YPKRTDLW++Y+D E  RL   D +R LF R +SL L 
Sbjct: 1380 QYEFKHGEIERGRTLFEGLIASYPKRTDLWNVYIDLERTRL---DRVRALFARMLSLKLN 1436

Query: 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922
            PKK KF+FKK+L  EK  G+E     V ++A  YV+++
Sbjct: 1437 PKKSKFVFKKWLGIEKEFGDEASQNKVLEQARAYVQAS 1474



 Score =  130 bits (328), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 151/702 (21%), Positives = 291/702 (41%), Gaps = 117/702 (16%)

Query: 54  FPRGGGHSLTQRE----RDEIHAEVDAEFEAVERGLHKKNKKKKKKT-------ER-KAN 101
           FPRGGG  LT  E      E   + D  F    + +   +  K+K++       +R K+N
Sbjct: 11  FPRGGGTHLTAVEVKQAGHEGKTDADQIFIPDPKPVKDTSSSKRKRSLLDPSSHQRIKSN 70

Query: 102 ETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG-- 159
                  + F +            +  + +++G+KL G++ E+   +L++ LP  L G  
Sbjct: 71  NISASQNTPFQNAYR------IEHLNHRRLTSGLKLAGLIIEIRPLELIVALPSQLVGHV 124

Query: 160 ----------------------------LARAADALDPILDNEIEANEDNLLPTIFHVGQ 191
                                           +D  D    + +++     L  IF VGQ
Sbjct: 125 PITEISSYYTQKLQESTDQDDEDTDSEDDQSNSDKADD-YQHRVKSGGLQGLNEIFKVGQ 183

Query: 192 LVSCIVLQLDDDKKEIGKR---------KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 242
            + C+V+        I  R         ++ L++  + L   L  + +   M L   VKS
Sbjct: 184 WIRCMVIHTTSGTPNIAHRASPLVRAAHRVKLTIDPARLNGDLEKKDLSANMTLDGAVKS 243

Query: 243 IEDHGYILHFGLP----------------SFTGF-----LPRNNLAENSGIDVKPGLLLQ 281
           IED+GY++   +P                +F  F     +P+ +L       +  G +++
Sbjct: 244 IEDNGYVVDLCVPVNSSQQASSSAPQTVTTFVLFSDAIKIPQTHLHNRELWQI--GQIVR 301

Query: 282 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL-ENGVMLS 340
             +  + ++     +  DP  ++  +      I+ID ++P  +V+  + +++ E G+ + 
Sbjct: 302 CRIDKVSKSGSTCTVFVDPTGIASSLLT--TAINIDCVLPLHLVTCLITAVVPEEGLNVE 359

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS---RAVGLTLN----- 392
           FL Y+ GT+D+++L      T  ++ +   +K+ AR+L+   +S   +   L+L      
Sbjct: 360 FLGYYKGTIDLYNLGVGIGGTKVEDRFKAGQKIRARVLWHTRSSSPQKTFSLSLLDHCVN 419

Query: 393 ------PYLLHNRAP---PS-------HVKVGDIYDQSKVVRVDRGLGLLLDIP--STPV 434
                 P LL N  P   PS          +G  +  ++V  V +  GL ++    S   
Sbjct: 420 MVTPGLPLLLQNDTPNGLPSESIEHLMRFNIGYTFQSTRVCGVVKDWGLYVEYSDNSNQQ 479

Query: 435 STPAYVTISDVAEEEVRKL----EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV 490
               ++ IS + +  +  +       Y+ G+  + +++G   ++G+     + S  E   
Sbjct: 480 RVIGFIHISAIRDTHLSDILVEGSGPYRLGTTHKAKVVGISPIDGMLQLSSQPSVVEQPY 539

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
               DV  G +V  +V  + S    +   GG+  +    H S+ ++  P KKF+ G +L 
Sbjct: 540 IRPQDVAVGEIVTAEVTRLCSSALFLSIFGGLDCVVWPDHYSDVKLQHPEKKFQAGMKLT 599

Query: 551 FRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            RVL V     RI +T +K+L+    + ++SYA A   ++T   IT+++     + F+  
Sbjct: 600 ARVLYVNPNKHRIALTLRKSLLDPTFSSITSYATAQPGMVTDAVITRVKARHLEIEFFGQ 659

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
            +G  P  E   +   E  S +  G+VVK +I+S  P +R+I
Sbjct: 660 TRGVIPIRE-AAEKFSESLSDFRAGRVVKVQILSVDPLARKI 700



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 27/241 (11%)

Query: 1287 GRVHFTELKNICVSDPL---SG-YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
            G +H + +++  +SD L   SG Y  G   K KV+ IS                +DGM  
Sbjct: 483  GFIHISAIRDTHLSDILVEGSGPYRLGTTHKAKVVGIS---------------PIDGMLQ 527

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
             +S    + V+ P     + +D++   IV   V  + S   F+ +   LD  V   + SD
Sbjct: 528  LSSQ--PSVVEQP---YIRPQDVAVGEIVTAEVTRLCSSALFLSIFGGLDCVVWPDHYSD 582

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1462
              ++ PEK+F  G  +  RVL V P   R+ +TL+ S     + S I + +    G +  
Sbjct: 583  VKLQHPEKKFQAGMKLTARVLYVNPNKHRIALTLRKS-LLDPTFSSITSYATAQPGMVTD 641

Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
              I RV++  L I        G+  + E +E   +++   +RAG  VKV+IL VD   R+
Sbjct: 642  AVITRVKARHLEIEFFGQTR-GVIPIREAAEKFSESLSD-FRAGRVVKVQILSVDPLARK 699

Query: 1523 I 1523
            I
Sbjct: 700  I 700


>gi|451851669|gb|EMD64967.1| hypothetical protein COCSADRAFT_189966 [Cochliobolus sativus ND90Pr]
          Length = 1795

 Score =  298 bits (762), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 240/899 (26%), Positives = 454/899 (50%), Gaps = 105/899 (11%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 1121
            G+L+   +  +K  +L ++      GRI ++E+ ++  ++ +     ++FK+  T+ AR+
Sbjct: 938  GTLMTVRVRSVKDTQLNVELAANVPGRISVSELFENWDSIPDKKRPTAHFKMNDTIQARV 997

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV-SIGQRVTG-----YVYK 1173
            + + +  + +  FL   S   +  T  E+ +K   +  E DV S+ + +TG     ++  
Sbjct: 998  LGRHDPRNFR--FLPITSRSSNKTTTYEMTAKTEEIKSEADVLSLDKVITGSSYIAFINN 1055

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            + +    + IS +++ ++   D   +  +L + ++ F +G A+   V +++     L L 
Sbjct: 1056 IADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGSALKVRVKTVDAANGKLDLT 1115

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
                   ++ K++ + +      +  G ++  R++K+      +VVQI   +   +   +
Sbjct: 1116 A---ASTVTGKSLSLQD------LKVGHVLPARVTKLHDA--SIVVQINESIAAPIFMEQ 1164

Query: 1294 LKNICVSDPLSGYDEGQ---FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1350
            L +         YD+ Q   FV   VL +         +++ + +   G+S+  S  LS+
Sbjct: 1165 LAD--------DYDKAQPKNFVAGDVLRVCV-------IDIDIPNKKLGLSARPSRVLSS 1209

Query: 1351 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1410
             +      +     L  N +V+G+VK++ + G ++ L   ++A V +S+LSD Y++  + 
Sbjct: 1210 SLPVKDPEITDRTQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSDEYIKDWKS 1269

Query: 1411 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1470
             F + +LV G+V+S +   +  +++LKTS  +T    E    + L +G IV  +++ VE 
Sbjct: 1270 VFHVDQLVTGKVISNKEDQRNPQLSLKTSIIKT-DYVEPLEFATLKIGQIVSAKVRHVED 1328

Query: 1471 YGLFITIENTNLV-GLCHVSELSEDHVDN--IETIYRAGEKVKVKILKVDKEKRRISLGM 1527
            YG+F+ ++N+N V GLCH+S++++  VD   ++ +Y+  + VK K++KVD + R++S  +
Sbjct: 1329 YGVFLIVDNSNNVSGLCHISQIADAVVDKEKLKDMYKKDDVVKAKVIKVDPKSRKVSFTL 1388

Query: 1528 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQ 1587
            K S  K +            DE +E+V    +S          +D D E   GG  +   
Sbjct: 1389 KYSQVKGEGKG--------EDEEMEDVSDVEQS----------EDDDSE---GGVKLDND 1427

Query: 1588 IESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK----------------TIDEKNNR 1631
            ++ R SV   E + D E  D D+  S+++   DE+K                T+D    +
Sbjct: 1428 VDMR-SVKSAESDDDIELADADS--SEDESENDESKATAKSLSTSGFDWTGATLDFDQQK 1484

Query: 1632 HAKKKEKEEREQEIRAA-------EERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYM 1682
               + E E+   + +         E+R  + DA  P++  ++ERL+   PNS+ +W++YM
Sbjct: 1485 GGAESESEDDAPKKKKKSKKATIKEDRTGDLDAYGPQSVADYERLLLGQPNSAELWVRYM 1544

Query: 1683 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1742
             F   + ++EKAR IA RAL TIN REE EKL++W A  +LEN++ +  ++A+  VF+ A
Sbjct: 1545 VFQRELNEIEKARQIARRALVTINPREEKEKLDVWTALLHLENDFSS--DDAINAVFKEA 1602

Query: 1743 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQQQEG 1800
             Q  D +++H  ++ +Y  + +   ADEL   M+K   F    K WL     L+   Q  
Sbjct: 1603 CQNNDDREIHERMIKIYISSGKIDKADELYQSMMKNKSFTADPKFWLSYAAFLMDVIQPP 1662

Query: 1801 ----VQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDL 1854
                 +A++QRA  S+   +H     + A LEFK  NG  +RGR++FEG++  + K+ D+
Sbjct: 1663 SPARARALLQRATQSVAAPQHRYLTQKFAALEFKSPNGDTERGRTIFEGLVDTFAKKGDV 1722

Query: 1855 WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1913
            W +YL  E   G+ D +R LFER   +     +++ +FKK+ E+E SV  ++ +E VK+
Sbjct: 1723 WDMYLMLEQSHGESDKVRDLFERMTKVG-KSSRIRGVFKKWAEWENSVRNKKGVEKVKK 1780



 Score =  192 bits (489), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 206/763 (26%), Positives = 345/763 (45%), Gaps = 66/763 (8%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---------DN 173
           ++ K +S G  + G + +++ +DLV+ LP  L G   L   +D L+  L         D 
Sbjct: 146 LSYKKLSPGTIVLGQITDISHQDLVLALPNNLVGYVPLTAVSDKLNERLEKLLKEDESDK 205

Query: 174 EIEANEDNL----LPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 228
           E  +++D+     L  +F VGQ L +CI     +  K   ++++ LS+   L+  GL+  
Sbjct: 206 EDGSDKDDFEDADLRDLFSVGQYLRACITATSGEGAK--ARKRLELSIEPKLVNTGLTKR 263

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFT--GFLPRNNLAENS-GIDVKPGLLLQGVVR 285
            +    ++ A V S EDHG ++  GL   T  GFLP+  L  N     V+ G +   ++ 
Sbjct: 264 KIPVNGMIQASVVSNEDHGLVMDLGLNDATLKGFLPKGELGPNLLHSKVQEGAVFMCLIT 323

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            ++   ++V LS+D  T +  +TK     +  +ID+ +PG  V   V     N +    L
Sbjct: 324 GLNSDGRIVKLSAD-HTKAGNLTKGNTLTEAPTIDVFLPGTAVDLLVTENTPNTITGKIL 382

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL---- 396
                T D +H   T   T+    +    KV AR+LF  P S  R V ++L  ++L    
Sbjct: 383 GLIDATADAYHSGATEKATDVSQKHKIGSKVKARVLFTCPGSDPRKVSVSLLDHVLSLST 442

Query: 397 ------HNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
                   R PP   + +  I + +KVV+V    G   D+    V    +  IS +++++
Sbjct: 443 RMSGKPKERKPPIDLLPISTIVESAKVVKVAPSQGAFFDLGIKDVV--GFAHISRLSDDK 500

Query: 450 VRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
           V  L ++   +K  S  + RI+G+  L+GL    L+    +       D+K G VVKGKV
Sbjct: 501 VDILSEEAGAFKLDSKHKARIVGYNALDGLFQLSLEKKVIDQPFLRIEDIKAGEVVKGKV 560

Query: 507 --IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR- 560
             +  D  GA   +V    G+  L P  H+++  +  P +KF+ G  +  RVL  +  R 
Sbjct: 561 HKLFADKTGATAVLVHLSDGITGLVPEMHLADVRLQHPERKFREGLPVTVRVLYTEPARH 620

Query: 561 -ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
            I +T KK+LV S++   ++Y   ++     G +  + ++G  V+FYN V+ + P +E+ 
Sbjct: 621 QIHLTLKKSLVNSEVKPWTNYKMISEGATGPGILVNVRRNGATVQFYNRVRAWLPVAEMS 680

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVS 674
                + +  +HVGQVV  R++ S+ A  R  L     P+ V  +     + +  G +V 
Sbjct: 681 EAFIHDATRHFHVGQVVNVRVL-SVDAKERQLLVSCKDPSAVDTNKEAAFNALNPGGIVK 739

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVL-- 730
           G V V   +      I  G  KG +   HL D  E   +  MK  I+ G   + L+VL  
Sbjct: 740 GTV-VEKSDESATLDIGNGV-KGILRLGHLTDGSEKKDISTMKK-IRVGGTLEDLVVLAK 796

Query: 731 DNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
             +S    +S K SL   AQ  +L      +     VHG+V  I+    FV     ++G 
Sbjct: 797 HGKSKTATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGILSDKVFVELGNGISGA 856

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +S+  +   A         QS+ + +  V+   G   LS+K
Sbjct: 857 LFKSQLPEDMAAAPDFGLRKDQSITARVTHVDVGKGLFWLSMK 899



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 102/447 (22%), Positives = 179/447 (40%), Gaps = 84/447 (18%)

Query: 538  KPGKKFKVGAELVFRVLG-------------VKSKRITVTHKKTL----VKSKLAILSSY 580
            +P   FK+   +  RVLG              +S   T T++ T     +KS+  +LS  
Sbjct: 982  RPTAHFKMNDTIQARVLGRHDPRNFRFLPITSRSSNKTTTYEMTAKTEEIKSEADVLS-- 1039

Query: 581  AEATDRLITH----GWITKIEKHGCFVRFYNGVQGFAPRSEL--GLDPGCEPSSMYHVGQ 634
                D++IT      +I  I     +V     ++G     +L   L+   +    + VG 
Sbjct: 1040 ---LDKVITGSSYIAFINNIADRHVWVNISANIRGRIDFFDLTDDLEKLSDVEKNFPVGS 1096

Query: 635  VVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYV--- 689
             +K R+ +   A+ +++L+     T   +S  DL K+G ++   V  +   ++VV +   
Sbjct: 1097 ALKVRVKTVDAANGKLDLTAASTVTGKSLSLQDL-KVGHVLPARVTKLHDASIVVQINES 1155

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSAKYSLIN 747
            IA       I  E LAD  + A     V     +  ++ V+D +  N  L LSA+ S + 
Sbjct: 1156 IA-----APIFMEQLADDYDKAQPKNFV---AGDVLRVCVIDIDIPNKKLGLSARPSRVL 1207

Query: 748  SAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
            S+  LP      +D + +  N VV G+V +I   G +VR    +  +   S   D    D
Sbjct: 1208 SSS-LPVKDPEITDRTQLKVNQVVRGFVKHIANNGVYVRLGPHVEAYVRVSHLSDEYIKD 1266

Query: 802  LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKH 861
                ++V Q V   ++    +     LSLK         S ++  ++   + A L+    
Sbjct: 1267 WKSVFHVDQLVTGKVISNKEDQRNPQLSLK--------TSIIKTDYVEPLEFATLK---- 1314

Query: 862  NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE------ 915
                        IG ++  KV    D+GV +  +  ++V G     Q+A A V+      
Sbjct: 1315 ------------IGQIVSAKVRHVEDYGVFLIVDNSNNVSGLCHISQIADAVVDKEKLKD 1362

Query: 916  ---SGSVIQAAILDVAKAERLVDLSLK 939
                  V++A ++ V    R V  +LK
Sbjct: 1363 MYKKDDVVKAKVIKVDPKSRKVSFTLK 1389



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 172/835 (20%), Positives = 315/835 (37%), Gaps = 149/835 (17%)

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP-------------------RSKAVDG-- 797
            + P ++V G + +I      +     L G+ P                    S   DG  
Sbjct: 151  LSPGTIVLGQITDISHQDLVLALPNNLVGYVPLTAVSDKLNERLEKLLKEDESDKEDGSD 210

Query: 798  ----QRADLSKTYYVGQSVRSNILDVNSETG----RITLSLKQSCCSSTDASFMQEHFLL 849
                + ADL   + VGQ +R+ I   + E      R+ LS++    ++          L 
Sbjct: 211  KDDFEDADLRDLFSVGQYLRACITATSGEGAKARKRLELSIEPKLVNTG---------LT 261

Query: 850  EEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQ 908
            + KI               V G I  SV+  + H     G+V+      + + GF+   +
Sbjct: 262  KRKIP--------------VNGMIQASVVSNEDH-----GLVMDLGLNDATLKGFLPKGE 302

Query: 909  LAG----ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREA 964
            L      + V+ G+V    I  +    R+V LS          + N+  +A         
Sbjct: 303  LGPNLLHSKVQEGAVFMCLITGLNSDGRIVKLSADHTKAGNLTKGNTLTEAPT------- 355

Query: 965  SKDLGVHQTVNAIVEIVKENY----------LVLSLPEYNHSIGYASVSDYNTQKFPQKQ 1014
               + V     A+  +V EN           L+ +  +  HS      +D +     QK 
Sbjct: 356  ---IDVFLPGTAVDLLVTENTPNTITGKILGLIDATADAYHSGATEKATDVS-----QKH 407

Query: 1015 FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK-KKSSYD---VGSLVQ-A 1069
             +  +     +   P S      + LL  +    T  S + K +K   D   + ++V+ A
Sbjct: 408  KIGSKVKARVLFTCPGSDPRKVSVSLLDHVLSLSTRMSGKPKERKPPIDLLPISTIVESA 467

Query: 1070 EITEIKP-----LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK 1124
            ++ ++ P      +L +K  +GF    HI+ ++DDK +++      FK+     ARI+  
Sbjct: 468  KVVKVAPSQGAFFDLGIKDVVGF---AHISRLSDDKVDILSEEAGAFKLDSKHKARIVG- 523

Query: 1125 SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV-DNEWALLTI 1183
             N  D     L++LS++  ++       +      D+  G+ V G V+K+  ++     +
Sbjct: 524  YNALDG----LFQLSLEKKVI------DQPFLRIEDIKAGEVVKGKVHKLFADKTGATAV 573

Query: 1184 SRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
              HL   +   + +       LQ  +R+F  G  VT  VL     +  + L L+  +  +
Sbjct: 574  LVHLSDGITGLVPEMHLADVRLQHPERKFREGLPVTVRVLYTEPARHQIHLTLK--KSLV 631

Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGV--GGLVVQIGPHLYGRVHFTELKNICV 1299
            + +    +N  M   I EG    G    IL  V   G  VQ    +   +   E+    +
Sbjct: 632  NSEVKPWTNYKM---ISEGATGPG----ILVNVRRNGATVQFYNRVRAWLPVAEMSEAFI 684

Query: 1300 SDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1359
             D    +  GQ V  +VL +    R               +S  + S + T+ +      
Sbjct: 685  HDATRHFHVGQVVNVRVLSVDAKERQLL------------VSCKDPSAVDTNKEAA---- 728

Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE---SPEKEFPIGK 1416
                 L+P  IV+G V   + +   + +   +   + L +L+DG  +   S  K+  +G 
Sbjct: 729  --FNALNPGGIVKGTVVEKSDESATLDIGNGVKGILRLGHLTDGSEKKDISTMKKIRVGG 786

Query: 1417 LVAGR-VLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESYGLF 1474
             +    VL+    SK   V+ K S  + A  S++  ++ +L  G+ V G ++ + S  +F
Sbjct: 787  TLEDLVVLAKHGKSKTATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGILSDKVF 846

Query: 1475 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            + + N  + G    S+L ED     +   R  + +  ++  VD  K    L MKS
Sbjct: 847  VELGN-GISGALFKSQLPEDMAAAPDFGLRKDQSITARVTHVDVGKGLFWLSMKS 900



 Score = 47.8 bits (112), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 24/186 (12%)

Query: 667 VKLGSLVSGVV-----DVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 720
           +K G +V G V     D     AV+V+ ++ G + G +P  HLAD  L+H         P
Sbjct: 550 IKAGEVVKGKVHKLFADKTGATAVLVH-LSDGIT-GLVPEMHLADVRLQH---------P 598

Query: 721 GYEFDQLL-----VLDNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
             +F + L     VL  E +   + L+ K SL+NS  +  ++   I   +   G + N+ 
Sbjct: 599 ERKFREGLPVTVRVLYTEPARHQIHLTLKKSLVNSEVKPWTNYKMISEGATGPGILVNVR 658

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             G  V+F  R+  + P ++  +    D ++ ++VGQ V   +L V+++  ++ +S K  
Sbjct: 659 RNGATVQFYNRVRAWLPVAEMSEAFIHDATRHFHVGQVVNVRVLSVDAKERQLLVSCKDP 718

Query: 834 CCSSTD 839
               T+
Sbjct: 719 SAVDTN 724


>gi|196015125|ref|XP_002117420.1| hypothetical protein TRIADDRAFT_61471 [Trichoplax adhaerens]
 gi|190579949|gb|EDV20036.1| hypothetical protein TRIADDRAFT_61471 [Trichoplax adhaerens]
          Length = 927

 Score =  296 bits (759), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 218/729 (29%), Positives = 374/729 (51%), Gaps = 55/729 (7%)

Query: 54  FPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG + L+  E       AE DA F+       KK KK K  T   A     D+ S  
Sbjct: 6   FPRGGSNVLSPLEVQNAKRKAEDDALFKTTPSTPLKKAKKIKSNTPATAKG--KDIPSTD 63

Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALD 168
            D +S       + IT+     G+ + G+V E+N  D+ + LPG L G   + + +  + 
Sbjct: 64  KDEVS------VDAITISMYKKGVSVLGIVKEINPVDITVSLPGLLTGYIHITQMSSQMT 117

Query: 169 PILDNEIEANE----DNL----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSL 220
            +L  ++++ E    D +    L + F +G ++ C+V +++  K +   ++I L++   +
Sbjct: 118 QLLTRQLKSTELDGEDGVTQLDLNSFFRIGDMLRCVVDEVELTKSK--HKRIKLAIDPKI 175

Query: 221 LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRN---NLAENSGI-DVKP 276
           L        +Q GM L+ Y++S+EDHGYI+ F + +  GFL +    + A++  + D+  
Sbjct: 176 LNAKFKANRIQTGMTLSGYIESVEDHGYIVSFEIENLVGFLSQQEGLDYAKSRELEDLPV 235

Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
           GL +  V++ +    ++V +      V K    +    S D L  G+ V+  +  I   G
Sbjct: 236 GLPVNCVIQKVKDQGRMVTVGVSSSKVLKAKAHEGMRFSYDTLQAGLYVNGTIAKISTKG 295

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
             LSFL  F G+V   HL       N      +  KV ARI++VD  S+ + L+L    +
Sbjct: 296 AQLSFLGGFRGSVTADHL-------NQNQSLQERSKVVARIIYVDRKSKKIALSLLNITV 348

Query: 397 HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
           + +   S V++G I + + V+RVD+G+GLLL +     +   YV IS  +++ + K  K+
Sbjct: 349 NGQMDISQVEIGQIIEDAVVLRVDKGVGLLLQLGD---NLKGYVHISRASDKHIDKFGKQ 405

Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
           ++ GS  R R++    ++ LA   ++ S  E    ++ D+KPG +V GK+I+++ FG +V
Sbjct: 406 HRAGSKHRCRVIANSLIDELAIITMQQSVLEQQFISYKDIKPGTLVMGKIISLEDFGILV 465

Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKL 574
           Q    +KALCP  HMS+  +  P KKFK G ++  RVL V  + +R+ +THKK++V S  
Sbjct: 466 QVTDHIKALCPRLHMSDITLKHPEKKFKEGNKIKCRVLTVDARRRRLILTHKKSMVHSSH 525

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
            +++SY EA + +  HG+I+ +  +GCF+ FYN V+GF  +  L       P +++ VGQ
Sbjct: 526 VVITSYEEAQENVTAHGFISSVRSNGCFITFYNNVRGFVHKKYLSTQYIENPETVFFVGQ 585

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV----VTPNAVVVYVI 690
           VV   I+S    +++++LS  +KP  ++      L    S VVDV     T   + V + 
Sbjct: 586 VVLTYIVSVDAVNKKLSLS--LKPPALTTSTSSNLKFNQSKVVDVDLFRATAEGLDVLMQ 643

Query: 691 AKGYSKGTIPTEHLADH-------LEHATVMKSVIKP-GYEF-DQLLVLDNESSNLLLSA 741
             G +  ++P  HL+D        + + T  +SV K    +F  QL+ +    S+++ S 
Sbjct: 644 PSGLA-ASVPVHHLSDFHSNSRALVNYFTSQQSVNKDVNTKFLKQLVTVGKTKSSVIASR 702

Query: 742 KYSLINSAQ 750
           K SL+++ Q
Sbjct: 703 KQSLVDAVQ 711



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 184/377 (48%), Gaps = 25/377 (6%)

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
           ++ +LKA A EG+ F++  ++ G+ V G +  + + GA + F GG +      H+++ + 
Sbjct: 259 SSKVLKAKAHEGMRFSYDTLQAGLYVNGTIAKISTKGAQLSFLGGFRGSVTADHLNQNQS 318

Query: 537 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           ++  ++ KV A +++  +  KSK+I ++     V  ++ I  S  E   ++I    + ++
Sbjct: 319 LQ--ERSKVVARIIY--VDRKSKKIALSLLNITVNGQMDI--SQVE-IGQIIEDAVVLRV 371

Query: 597 EKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           +K  G  ++  + ++G+   S        +    +  G   +CR++++   S    L+ +
Sbjct: 372 DKGVGLLLQLGDNLKGYVHISRASDKHIDKFGKQHRAGSKHRCRVIAN---SLIDELAII 428

Query: 656 MKPTRVSEDDLV-----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLE 709
                V E   +     K G+LV G +  +    ++V V    + K   P  H++D  L+
Sbjct: 429 TMQQSVLEQQFISYKDIKPGTLVMGKIISLEDFGILVQVT--DHIKALCPRLHMSDITLK 486

Query: 710 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
           H    +   K G +   ++L +D     L+L+ K S+++S+  + +       N   HG+
Sbjct: 487 HP---EKKFKEGNKIKCRVLTVDARRRRLILTHKKSMVHSSHVVITSYEEAQENVTAHGF 543

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT-YYVGQSVRSNILDVNSETGRIT 827
           + ++   GCF+ F   + GF  + K +  Q  +  +T ++VGQ V + I+ V++   +++
Sbjct: 544 ISSVRSNGCFITFYNNVRGFVHK-KYLSTQYIENPETVFFVGQVVLTYIVSVDAVNKKLS 602

Query: 828 LSLKQSCCSSTDASFMQ 844
           LSLK    +++ +S ++
Sbjct: 603 LSLKPPALTTSTSSNLK 619



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 111/465 (23%), Positives = 187/465 (40%), Gaps = 81/465 (17%)

Query: 1050 SSSKRAKKKS------SYDV---GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
            SSSK  K K+      SYD    G  V   I +I     +L F  GF G +    +N ++
Sbjct: 258  SSSKVLKAKAHEGMRFSYDTLQAGLYVNGTIAKISTKGAQLSFLGGFRGSVTADHLNQNQ 317

Query: 1101 SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
            S          +    V ARII    K            I  S+L ++  G     +   
Sbjct: 318  S---------LQERSKVVARIIYVDRKSK---------KIALSLLNITVNGQ---MDISQ 356

Query: 1161 VSIGQRV-TGYVYKVDNEWALL-TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
            V IGQ +    V +VD    LL  +  +LK  +                   HI +A   
Sbjct: 357  VEIGQIIEDAVVLRVDKGVGLLLQLGDNLKGYV-------------------HISRASDK 397

Query: 1219 HVLSINKE-----KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI--SKIL 1271
            H+    K+     K   R++     D ++  T+  S    Q FI   DI  G +   KI+
Sbjct: 398  HIDKFGKQHRAGSKHRCRVIANSLIDELAIITMQQSVLEQQ-FISYKDIKPGTLVMGKII 456

Query: 1272 SGVG-GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
            S    G++VQ+  H+        + +I +  P   + EG  +KC+VL +    R    + 
Sbjct: 457  SLEDFGILVQVTDHIKALCPRLHMSDITLKHPEKKFKEGNKIKCRVLTVDARRR---RLI 513

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            L+ + S+              V +    +   E+   N+   G++ +V S GCFI     
Sbjct: 514  LTHKKSM--------------VHSSHVVITSYEEAQENVTAHGFISSVRSNGCFITFYNN 559

Query: 1391 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
            +   V    LS  Y+E+PE  F +G++V   ++SV+ ++K++ ++LK     T++ S + 
Sbjct: 560  VRGFVHKKYLSTQYIENPETVFFVGQVVLTYIVSVDAVNKKLSLSLKPPALTTSTSSNL- 618

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1495
                 +   +V   + R  + GL + ++ + L     V  LS+ H
Sbjct: 619  ---KFNQSKVVDVDLFRATAEGLDVLMQPSGLAASVPVHHLSDFH 660


>gi|169614287|ref|XP_001800560.1| hypothetical protein SNOG_10281 [Phaeosphaeria nodorum SN15]
 gi|111061496|gb|EAT82616.1| hypothetical protein SNOG_10281 [Phaeosphaeria nodorum SN15]
          Length = 1794

 Score =  296 bits (759), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 233/896 (26%), Positives = 446/896 (49%), Gaps = 82/896 (9%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL--FSNFKIGQTVTARI 1121
            G+ ++  I  IK  ++ ++      GRI ++E+ D   ++ +     ++F++ QT+ A++
Sbjct: 935  GTELKVRIRSIKSTQINVELAENVQGRISVSELFDSWDDIPDKKRPTAHFQMNQTIKAKV 994

Query: 1122 IAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
            + + +  + +          K+  ++L+ K   L  SE G  L  ++  V+ G     +V
Sbjct: 995  LGRHDARNHRFLPITHRSSNKTPTFDLTAKNEKLK-SE-GDVLSLDK--VTEGSSYVAFV 1050

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
              + + +  + +S +++ ++  LD   +  +L   +  F +G A+   V +++     L 
Sbjct: 1051 NNIADRYVWVNLSANVRGRVDFLDLTDDLEQLSAVEENFPVGSALKVRVKAVDIAAGRLD 1110

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
            L        ++ KT+ +++      +  G ++  R++KI      +VVQ+  ++   +  
Sbjct: 1111 LTA---ASTVTGKTLSLAD------LKVGYVLPARVTKIHDA--SIVVQVNENIAAPIFL 1159

Query: 1292 TELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1351
              L +       S Y +G  ++  V+E+             + +   G+S+  S  LS+ 
Sbjct: 1160 ERLADDYDKAKPSEYKQGDVLRVCVIEVD------------IPNKKLGLSARPSKVLSST 1207

Query: 1352 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1411
            +      +E    L  + +V+G++K +   G ++ L   ++  V +SNLSD Y++  +  
Sbjct: 1208 LPVKDPIIEDKAQLKVHQVVRGFIKKIADNGVYVRLGPHVETYVRVSNLSDSYIKDWKSA 1267

Query: 1412 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1471
            F + +LV G+++S +   +  ++TLKTS +   +  EI    ++  G IV  ++++V  +
Sbjct: 1268 FHVDQLVTGKIISNKEDQRNAQMTLKTS-TIQGNYVEILEFGDMKAGQIVTAKVRKVAEF 1326

Query: 1472 GLFITIENTNLV-GLCHVSELSEDHV--DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            G+F+ ++N+N V GLCHVS+L++  V  D I+ +Y+ G+ VK K++ V+   RRI+  +K
Sbjct: 1327 GVFLVVDNSNNVSGLCHVSKLADKPVAKDKIKDMYKEGDIVKAKVVSVNPTARRINFSLK 1386

Query: 1529 SSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES-------EDGG 1581
             S  K   +  +   ++   +        +    +E   +  +D+DM S       EDG 
Sbjct: 1387 YSQVKGSEEEDEDMEDDSDVDVDMADDVDSDDGGIE---LDDEDVDMRSVKSAESDEDGA 1443

Query: 1582 SLVLAQIES-----RASVPPLEVNLDD---EQPDMDNGISQNQGHTDEAKTIDEKNNRHA 1633
              V ++ ES     +A+VP L  +  D      D D     +   +D A T  ++ ++ A
Sbjct: 1444 DEVESEAESETNATKAAVPGLSTSGFDWTGATLDFDQVERGHDSDSDGAATKKKRKSKKA 1503

Query: 1634 KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEK 1693
              KE    +          L+   P++  +FERL+   PNS+ +W++YM F   + ++EK
Sbjct: 1504 TIKEDRTGD----------LDAFGPQSVADFERLLLGQPNSAEMWVRYMIFQRELNEIEK 1553

Query: 1694 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1753
            AR IA RAL TIN REE EKL++W A  +LEN++ +  ++A+   F+ A Q+ D +++H 
Sbjct: 1554 ARQIARRALSTINPREEKEKLDVWTALLHLENDFVS--DDAIEATFKEACQHNDSREIHE 1611

Query: 1754 ALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLK----QQQEGVQAVVQR 1807
             ++ +Y    + + AD L   M+K   F      WL     L+           +A++QR
Sbjct: 1612 RMIKIYISASKFEKADNLYQSMMKNKSFTPDPNFWLGYATFLMDVLSPPSPTRARALLQR 1671

Query: 1808 ALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1865
            A  S+P  +H     + A LEFK  NG A+RGR++FEG++S +P + D+W +YL  E+  
Sbjct: 1672 ATQSVPSTQHRHLTQKFAALEFKSANGDAERGRTIFEGLVSTWPNKGDVWDVYLSLELSH 1731

Query: 1866 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            G  + +R LFER   +    + M  +FKK+ E+E+S G  + +E VK    ++ E+
Sbjct: 1732 GTEENVRDLFERMSKVGKKKRAMG-VFKKWAEWEESKGNRKGVERVKALEQQWREA 1786



 Score =  198 bits (504), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 234/926 (25%), Positives = 398/926 (42%), Gaps = 124/926 (13%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQ-------DLALPPD----D 49
           M A  RK+++ S+   P     + +  +++K++ +D  E         D+A  P     D
Sbjct: 1   MGAIKRKAEQGST---PSKKDKTASTDRHAKRRKSDVTEQPAPAKSKPDIAPAPKSVFKD 57

Query: 50  DVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGS 109
           +   FPRGG   LT  E  +I  + + +    + G+ +             ++   D+GS
Sbjct: 58  EEKSFPRGGASVLTPLEHKQIQIKANQDVLFEQSGVKRTG----------GDDGFSDMGS 107

Query: 110 LFG--------------------DGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDL 149
             G                    DG   K+ R    +  K ++ G  + G V +V+ +D+
Sbjct: 108 DDGEAAAPKAKKRPAKKSKKGQDDGEDEKIVRVEG-LNYKKLTPGTIILGQVTDVSHQDI 166

Query: 150 VICLPGGLRG---LARAADALDP--------------ILDNEIEANEDNLLPTIFHVGQL 192
           V+ LP  L G   L   +D L+               I ++E E+ ED  L  +F +GQ 
Sbjct: 167 VLALPNNLVGYVPLTAVSDKLNERLEKLLKEEEDGADIAEDEDESFEDVHLEDMFTIGQY 226

Query: 193 V-SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
           + +C+    DD  +   ++++ LS+   L+ KGLS   +    ++ A V S EDHG ++ 
Sbjct: 227 MRACVTATTDDSAR--ARKRLELSIEPKLVNKGLSKRKMPINSMVQASVVSNEDHGLVMD 284

Query: 252 FGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT 308
            GL      GFLP+  L        V+ G +   +V  ++   ++V LS+D         
Sbjct: 285 LGLDDSKIKGFLPKGELGPKIQHSKVQEGAVFMCLVTGLNSDGRIVKLSADHSKAGNLAK 344

Query: 309 KDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 366
            +   +  +ID+ +PG  V   V     + +    L     T D +H   T    +    
Sbjct: 345 GNTLTEAPTIDVFLPGTAVDVLVADTTASTLTGKILGLADATADAYHSGATEKGGDVAQK 404

Query: 367 YNQHKKVNARILFVDPTSRA--VGLTLNPYLL----------HNRAPP-SHVKVGDIYDQ 413
           Y    KV ARILF  P S    VG++L  +++            R P    + +  I D 
Sbjct: 405 YKIGSKVKARILFTCPDSDPARVGVSLLDHVVALSTRMSGKPKERKPALDLMPISTIIDN 464

Query: 414 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGF 470
           +KVV+V   LG   ++    V    +  IS ++++ V  L +    YK GS  R RI+G+
Sbjct: 465 AKVVKVAPALGAFFELGVRDVL--GFAHISRLSDDRVDVLSEDAGAYKLGSTHRARIVGY 522

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKAL 525
             ++GL    L+    +       D+KPG VVKGKV  +  D  GA   +V    G+  L
Sbjct: 523 NSIDGLFQLSLEQKVLDQAFLRIEDIKPGEVVKGKVHKLIADKKGASAVLVHLSDGITGL 582

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEA 583
               H+++ ++  P +KF+ G  +  RVL  +  R  I +T KK+LV S +   + Y+  
Sbjct: 583 VTEMHLADVKLQHPERKFREGVAVTARVLYTEPARHQIQLTLKKSLVNSDVKPWTDYSMI 642

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
           ++     G +  + K+G  VRFY  V  + P +E+      + +  +  GQVV  R++S 
Sbjct: 643 SEGSKGPGILVNVLKNGAKVRFYGDVTAWLPVAEMSEAFMDDATRHFTKGQVVNVRVISV 702

Query: 644 IPASRRINLSF----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 699
               R++ +S      + P + +  + +  G++  G V +   + V    +  G  KG +
Sbjct: 703 NAKDRQMLVSCKDPAAVDPNKEAAFNALNPGNVTKGTV-LEKSDDVATLDLGHGV-KGVL 760

Query: 700 PTEHLADHLEHATV--MKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQ--QLP 753
              HL D  E   +  MK  I+ G   + L+VL+    S  + +S K SL   AQ  +L 
Sbjct: 761 RIGHLTDGSEKKDISTMKK-IRVGGTLEDLVVLNKLLRSKVVTVSNKPSLRKDAQASKLI 819

Query: 754 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD--------GQRADLSKT 805
           ++   +    +VHG+V  I+    FV F   ++G   +S+  +        G R D    
Sbjct: 820 TNVEELTSGEIVHGFVRGILPDKVFVEFGNGVSGAVFKSQMTEEILTAPNFGLRKD---- 875

Query: 806 YYVGQSVRSNILDVNSETGRITLSLK 831
               QS+   I  V+   G   LS+K
Sbjct: 876 ----QSMTCRITYVDPTNGMFWLSMK 897



 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 162/373 (43%), Gaps = 43/373 (11%)

Query: 314 ISIDLLVPGMMVSTRVQSILEN-----GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 368
           + I+ + PG +V  +V  ++ +      V++      TG V   HL +     + +  + 
Sbjct: 543 LRIEDIKPGEVVKGKVHKLIADKKGASAVLVHLSDGITGLVTEMHLADV-KLQHPERKFR 601

Query: 369 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 428
           +   V AR+L+ +P    + LTL   L+++   P         D S +    +G G+L++
Sbjct: 602 EGVAVTARVLYTEPARHQIQLTLKKSLVNSDVKP-------WTDYSMISEGSKGPGILVN 654

Query: 429 IPSTPV------STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHL----- 473
           +              A++ +++++E  +    + + +G  V VR++      R +     
Sbjct: 655 VLKNGAKVRFYGDVTAWLPVAEMSEAFMDDATRHFTKGQVVNVRVISVNAKDRQMLVSCK 714

Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-- 531
           +  A    K +AF  L        PG V KG V+      A +    GVK +  + H+  
Sbjct: 715 DPAAVDPNKEAAFNAL-------NPGNVTKGTVLEKSDDVATLDLGHGVKGVLRIGHLTD 767

Query: 532 -SEFEIVKPGKKFKVGA---ELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATD 585
            SE + +   KK +VG    +LV     ++SK +TV++K +L K   A  ++++  E T 
Sbjct: 768 GSEKKDISTMKKIRVGGTLEDLVVLNKLLRSKVVTVSNKPSLRKDAQASKLITNVEELTS 827

Query: 586 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             I HG++  I     FV F NGV G   +S++  +    P+      Q + CRI    P
Sbjct: 828 GEIVHGFVRGILPDKVFVEFGNGVSGAVFKSQMTEEILTAPNFGLRKDQSMTCRITYVDP 887

Query: 646 ASRRINLSFMMKP 658
            +    LS  ++P
Sbjct: 888 TNGMFWLSMKLEP 900



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 19/179 (10%)

Query: 1361 KIEDLSPNMIVQGYVKNVTS--KGC---FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
            +IED+ P  +V+G V  + +  KG     + LS  +   V   +L+D  ++ PE++F  G
Sbjct: 544  RIEDIKPGEVVKGKVHKLIADKKGASAVLVHLSDGITGLVTEMHLADVKLQHPERKFREG 603

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVG-DIVIGQIK---RVE 1469
              V  RVL  EP   ++++TLK S  +S     ++ + +S    G  I++  +K   +V 
Sbjct: 604  VAVTARVLYTEPARHQIQLTLKKSLVNSDVKPWTDYSMISEGSKGPGILVNVLKNGAKVR 663

Query: 1470 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             YG        ++     V+E+SE  +D+    +  G+ V V+++ V+ + R++ +  K
Sbjct: 664  FYG--------DVTAWLPVAEMSEAFMDDATRHFTKGQVVNVRVISVNAKDRQMLVSCK 714



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 149/678 (21%), Positives = 274/678 (40%), Gaps = 68/678 (10%)

Query: 874  IGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAG----ATVESGSVIQAAILDVA 928
            I S+++  V  + D G+V+    + S + GF+   +L      + V+ G+V    +  + 
Sbjct: 265  INSMVQASVVSNEDHGLVMDLGLDDSKIKGFLPKGELGPKIQHSKVQEGAVFMCLVTGLN 324

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT-VNAIVEIVKENYL- 986
               R+V LS          + N+  +A         + D+ +  T V+ +V     + L 
Sbjct: 325  SDGRIVKLSADHSKAGNLAKGNTLTEA--------PTIDVFLPGTAVDVLVADTTASTLT 376

Query: 987  --VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAI 1044
              +L L +      Y S +        QK  +  +     +   P S  A   + LL  +
Sbjct: 377  GKILGLADATAD-AYHSGATEKGGDVAQKYKIGSKVKARILFTCPDSDPARVGVSLLDHV 435

Query: 1045 SETETSSSKRAK-KKSSYD---VGSLV-QAEITEIKP-----LELRLKFGIGFHGRIHIT 1094
                T  S + K +K + D   + +++  A++ ++ P      EL ++  +GF    HI+
Sbjct: 436  VALSTRMSGKPKERKPALDLMPISTIIDNAKVVKVAPALGAFFELGVRDVLGF---AHIS 492

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL 1154
             ++DD+ +V+      +K+G T  ARI+   N  D     L++LS++  +L       + 
Sbjct: 493  RLSDDRVDVLSEDAGAYKLGSTHRARIVG-YNSIDG----LFQLSLEQKVL------DQA 541

Query: 1155 LFEECDVSIGQRVTGYVYK-VDNEWALLTISRHLKAQL--FILDSAYEPSELQEFQRRFH 1211
                 D+  G+ V G V+K + ++     +  HL   +   + +      +LQ  +R+F 
Sbjct: 542  FLRIEDIKPGEVVKGKVHKLIADKKGASAVLVHLSDGITGLVTEMHLADVKLQHPERKFR 601

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
             G AVT  VL     +  ++L L+      S    D+      + I EG    G +  +L
Sbjct: 602  EGVAVTARVLYTEPARHQIQLTLKK-----SLVNSDVKPWTDYSMISEGSKGPGILVNVL 656

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
                G  V+    +   +   E+    + D    + +GQ V  +V+ ++   R    V  
Sbjct: 657  K--NGAKVRFYGDVTAWLPVAEMSEAFMDDATRHFTKGQVVNVRVISVNAKDRQML-VSC 713

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
               +++D       + L+    T G  LEK +D++   +  G VK V   G     S K 
Sbjct: 714  KDPAAVDPNKEAAFNALNPGNVTKGTVLEKSDDVATLDLGHG-VKGVLRIGHLTDGSEKK 772

Query: 1392 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE-IN 1450
            D   +      G +E          LV   VL+    SK V V+ K S  + A  S+ I 
Sbjct: 773  DISTMKKIRVGGTLED---------LV---VLNKLLRSKVVTVSNKPSLRKDAQASKLIT 820

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
            N+  L  G+IV G ++ +    +F+   N  + G    S+++E+ +       R  + + 
Sbjct: 821  NVEELTSGEIVHGFVRGILPDKVFVEFGN-GVSGAVFKSQMTEEILTAPNFGLRKDQSMT 879

Query: 1511 VKILKVDKEKRRISLGMK 1528
             +I  VD       L MK
Sbjct: 880  CRITYVDPTNGMFWLSMK 897



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 70/364 (19%), Positives = 144/364 (39%), Gaps = 36/364 (9%)

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT-TNWKNDYNQHKK 372
            +S+D +  G      V +I +  V ++      G VD   L +     +  + ++     
Sbjct: 1035 LSLDKVTEGSSYVAFVNNIADRYVWVNLSANVRGRVDFLDLTDDLEQLSAVEENFPVGSA 1094

Query: 373  VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVG--------DIYDQSKVVRVDRGLG 424
            +  R+  VD  +  + LT    +       + +KVG         I+D S VV+V+  + 
Sbjct: 1095 LKVRVKAVDIAAGRLDLTAASTVTGKTLSLADLKVGYVLPARVTKIHDASIVVQVNENIA 1154

Query: 425  LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR------HLEGLAT 478
                         A + +  +A++  +    +YK+G  +RV ++          L    +
Sbjct: 1155 -------------APIFLERLADDYDKAKPSEYKQGDVLRVCVIEVDIPNKKLGLSARPS 1201

Query: 479  GILKAS--AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
             +L ++    + ++   + +K   VV+G +  +   G  V+    V+    + ++S+  I
Sbjct: 1202 KVLSSTLPVKDPIIEDKAQLKVHQVVRGFIKKIADNGVYVRLGPHVETYVRVSNLSDSYI 1261

Query: 537  VKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
                  F V   +  +++  K   +   +T K + ++     +  + +     I    + 
Sbjct: 1262 KDWKSAFHVDQLVTGKIISNKEDQRNAQMTLKTSTIQGNYVEILEFGDMKAGQIVTAKVR 1321

Query: 595  KIEKHGCF--VRFYNGVQGFAPRSELGLDPGCEPS--SMYHVGQVVKCRIMSSIPASRRI 650
            K+ + G F  V   N V G    S+L   P  +     MY  G +VK +++S  P +RRI
Sbjct: 1322 KVAEFGVFLVVDNSNNVSGLCHVSKLADKPVAKDKIKDMYKEGDIVKAKVVSVNPTARRI 1381

Query: 651  NLSF 654
            N S 
Sbjct: 1382 NFSL 1385



 Score = 41.2 bits (95), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 156/368 (42%), Gaps = 32/368 (8%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYI---LHFGLPSFTGFLP-RNNLAENSGI--DVKPGL 278
            LSL+ V EG    A+V +I D  Y+   L   +     FL   ++L + S +  +   G 
Sbjct: 1035 LSLDKVTEGSSYVAFVNNIADR-YVWVNLSANVRGRVDFLDLTDDLEQLSAVEENFPVGS 1093

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             L+  V+++D     + L     T +  VT   K +S+  L  G ++  RV  I +  ++
Sbjct: 1094 ALKVRVKAVDIAAGRLDL-----TAASTVTG--KTLSLADLKVGYVLPARVTKIHDASIV 1146

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 398
            +         + +  L + +      ++Y Q   +   ++ VD  ++ +GL+  P  + +
Sbjct: 1147 VQVNENIAAPIFLERLADDYDKAK-PSEYKQGDVLRVCVIEVDIPNKKLGLSARPSKVLS 1205

Query: 399  RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTISDVAEEEVRK 452
               P    + +   Q KV +V R  G +  I    V          YV +S++++  ++ 
Sbjct: 1206 STLPVKDPIIEDKAQLKVHQVVR--GFIKKIADNGVYVRLGPHVETYVRVSNLSDSYIKD 1263

Query: 453  LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 509
             +  +     V  +I+  +  +  A   LK S  +G    +    D+K G +V  KV  V
Sbjct: 1264 WKSAFHVDQLVTGKIISNKEDQRNAQMTLKTSTIQGNYVEILEFGDMKAGQIVTAKVRKV 1323

Query: 510  DSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAELVFRVLGVK--SKRITV 563
              FG   +V     V  LC +  +++  + K   K  +K G  +  +V+ V   ++RI  
Sbjct: 1324 AEFGVFLVVDNSNNVSGLCHVSKLADKPVAKDKIKDMYKEGDIVKAKVVSVNPTARRINF 1383

Query: 564  THKKTLVK 571
            + K + VK
Sbjct: 1384 SLKYSQVK 1391


>gi|449675702|ref|XP_002169396.2| PREDICTED: rRNA biogenesis protein RRP5-like [Hydra magnipapillata]
          Length = 967

 Score =  296 bits (757), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 233/790 (29%), Positives = 388/790 (49%), Gaps = 81/790 (10%)

Query: 54  FPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG   LT  E  ++   AE DA F+  E    K  K +K  T +K  +         
Sbjct: 9   FPRGGAQVLTPLEARKVRSIAEKDALFKKEEPIKKKVKKTEKITTVKKPLKQ-------- 60

Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA----- 166
                    +  ++ + K IS G+ + G V ++N+K+ +I LP GL G     D      
Sbjct: 61  ---------KLRDQFSFKYISKGLLILGCVRDINKKEYIIGLPNGLSGYVSFVDVQSFLQ 111

Query: 167 -LDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL 225
            +D I D E + N   L  ++  VGQLV  +V ++D DK   G RKI LS+  S +  G+
Sbjct: 112 EVDYIEDEENQKNAI-LTSSLLSVGQLVPVVVKKIDSDKH--GYRKILLSIFPSDINGGV 168

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
               +   +VL   ++S+EDHG+++ FG   F+GFLP       +  D+K G L+     
Sbjct: 169 KANALHNNLVLWGMIQSMEDHGFVVSFGNKEFSGFLP------GTDSDLKVGQLMWFATT 222

Query: 286 SIDRTRKVVYLSSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILEN-GVMLSFL 342
            +   +KV+ +S D + +   KC+ K  K  S   L+PG +V  + +   EN G  L F 
Sbjct: 223 KVSSNKKVLTVSLDHNIIIKMKCLQKSAKFTS---LMPGHLVDFKTEKKSENMGFGLIF- 278

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP- 401
               G+ D F  +   P  + +    +H+KV ARI+ +DP ++ +G+TL P L+  + P 
Sbjct: 279 ----GSFDAFVDKRHVPL-DKEIVLIEHEKVEARIIHIDPNTKKIGVTLLPELI--KFPK 331

Query: 402 ---PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 458
               +H  VG++  + +VVR D   GL + +     +T  YV IS   +    KL K +K
Sbjct: 332 NILSNHHSVGEVL-ECQVVRSDSSSGLYMKMSE---NTYGYVHISQTNDNRTTKLGKTFK 387

Query: 459 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
            G+  + R+LGF  ++   T  +K S  E    ++ D+KPGM++ G ++ ++ FG IV+ 
Sbjct: 388 VGTTHKCRVLGFSAMDSAYTLTMKKSILEKQFLSYEDLKPGMLISGTIVTLEDFGCIVKI 447

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAI 576
              +KALCP  H+++  +  P KKF  G +L FRVL  K   + + VTHKKTLV S   I
Sbjct: 448 TDNIKALCPRLHLADINLKHPEKKFVEGKKLHFRVLRCKPSERSLIVTHKKTLVNSMFPI 507

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
           +SSY       + HG++T ++  G FV FYN V+   P+SE  L PG    + +++GQV+
Sbjct: 508 VSSYNVDVGT-VAHGFVTAVKSFGVFVAFYNNVKALLPKSESRLAPGATVETNFYIGQVL 566

Query: 637 KCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSG--------VVDVVTP 682
           +C ++S   ++ ++ +S      F+ +   ++++  +++G +V G        +++V   
Sbjct: 567 QCTVISVDASAEKMVVSLKHNDPFIQEKLTINQEKALEIGDVVHGHFEKLSGDIINVKLE 626

Query: 683 NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742
           N ++V +  K  S   I  E  A+ L+ A+          +F  L V + +      +  
Sbjct: 627 NNLLVNINQKHLSDFEIINEQWANILKTAS-------NDLQFQDLFVYEKDKKLQTFNTS 679

Query: 743 YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +   +++ S  + +    V  G V +++  G FV     + G  P     D   +D 
Sbjct: 680 LKQVIHGRKITS-FNELKVGMVFGGTVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDP 738

Query: 803 SKTYYVGQSV 812
           S+ Y V QS+
Sbjct: 739 SEMYSVHQSL 748



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 25/254 (9%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            GL +++  + YG VH ++  +   +     +  G   KC+VL                  
Sbjct: 356  GLYMKMSENTYGYVHISQTNDNRTTKLGKTFKVGTTHKCRVL------------------ 397

Query: 1336 SLDGMSSTNSS-DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
               G S+ +S+  L+       K     EDL P M++ G +  +   GC + ++  + A 
Sbjct: 398  ---GFSAMDSAYTLTMKKSILEKQFLSYEDLKPGMLISGTIVTLEDFGCIVKITDNIKAL 454

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
                +L+D  ++ PEK+F  GK +  RVL  +P  + + VT K   +   S   I +  N
Sbjct: 455  CPRLHLADINLKHPEKKFVEGKKLHFRVLRCKPSERSLIVTHK--KTLVNSMFPIVSSYN 512

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
            + VG +  G +  V+S+G+F+   N N+  L   SE        +ET +  G+ ++  ++
Sbjct: 513  VDVGTVAHGFVTAVKSFGVFVAFYN-NVKALLPKSESRLAPGATVETNFYIGQVLQCTVI 571

Query: 1515 KVDKEKRRISLGMK 1528
             VD    ++ + +K
Sbjct: 572  SVDASAEKMVVSLK 585



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 136/302 (45%), Gaps = 17/302 (5%)

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           +K+I VT    L+K    ILS++  +   ++    +      G +++      G+   S+
Sbjct: 315 TKKIGVTLLPELIKFPKNILSNH-HSVGEVLECQVVRSDSSSGLYMKMSENTYGYVHISQ 373

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVS 674
              +   +    + VG   KCR++          L+    +++   +S +DL K G L+S
Sbjct: 374 TNDNRTTKLGKTFKVGTTHKCRVLGFSAMDSAYTLTMKKSILEKQFLSYEDL-KPGMLIS 432

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE 733
           G +  +     +V +      K   P  HLAD +L+H    K V      F  L    +E
Sbjct: 433 GTIVTLEDFGCIVKITDN--IKALCPRLHLADINLKHPE-KKFVEGKKLHFRVLRCKPSE 489

Query: 734 SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
            S L+++ K +L+NS   + S + ++   +V HG+V  +   G FV F   +    P+S+
Sbjct: 490 RS-LIVTHKKTLVNSMFPIVS-SYNVDVGTVAHGFVTAVKSFGVFVAFYNNVKALLPKSE 547

Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKI 853
           +     A +   +Y+GQ ++  ++ V++   ++ +SLK       +  F+QE   + ++ 
Sbjct: 548 SRLAPGATVETNFYIGQVLQCTVISVDASAEKMVVSLKH------NDPFIQEKLTINQEK 601

Query: 854 AM 855
           A+
Sbjct: 602 AL 603



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 129/310 (41%), Gaps = 35/310 (11%)

Query: 530 HMSEFEIVKP--GKKFKVGA-ELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEAT 584
           H+S+FEI+        K  + +L F+ L V  K   +    T +K  +    ++S+ E  
Sbjct: 637 HLSDFEIINEQWANILKTASNDLQFQDLFVYEKDKKLQTFNTSLKQVIHGRKITSFNELK 696

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ--VVKCRI-- 640
             ++  G ++ +  +G FV    GV G  P   L  +   +PS MY V Q  +VK +   
Sbjct: 697 VGMVFGGTVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDPSEMYSVHQSLIVKVKTSA 756

Query: 641 --------MSSIPASRRI--NLSFMMKPTRVSEDDLVKLGSLVSG--------VVDVVTP 682
                   + S+  S  I  N  F+ +   ++++  +++G +V G        +++V   
Sbjct: 757 KVCLLGKNVRSVFGSLGIEHNDPFIQEKLTINQEKALEIGDVVHGHFEKLSGDIINVKLE 816

Query: 683 NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742
           N ++V +  K  S   I  E  A+ L+ A+          +F  L V + +      +  
Sbjct: 817 NNLLVNINQKHLSDFEIINEQWANILKTAS-------NDLQFQDLFVYEKDKKLQTFNTS 869

Query: 743 YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
              +   +++ S  + +    V  G V +++  G FV     + G  P     D   +D 
Sbjct: 870 LKQVIHGRKITS-FNELKVGMVFGGTVSHVMSYGLFVCISPGVNGLVPNGHLADNYISDP 928

Query: 803 SKTYYVGQSV 812
           S+ Y V QS+
Sbjct: 929 SEMYSVHQSL 938



 Score = 45.4 bits (106), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 14/137 (10%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLL----SNLSDGYVESPEKEFPIGKLVAGRVLSV 1425
            +  G+V  V S G F+      + K LL    S L+ G   + E  F IG+++   V+SV
Sbjct: 518  VAHGFVTAVKSFGVFVAFYN--NVKALLPKSESRLAPG--ATVETNFYIGQVLQCTVISV 573

Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
            +  ++++ V+LK +D     +  IN    L +GD+V G  +++    + + +EN  LV  
Sbjct: 574  DASAEKMVVSLKHNDPFIQEKLTINQEKALEIGDVVHGHFEKLSGDIINVKLENNLLV-- 631

Query: 1486 CHVSELSEDHVDNIETI 1502
                 +++ H+ + E I
Sbjct: 632  ----NINQKHLSDFEII 644



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 67/351 (19%), Positives = 142/351 (40%), Gaps = 36/351 (10%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            +V +G    G+V  V +    +    ++KA L   +S   P    E    F+IG+ +   
Sbjct: 512  NVDVGTVAHGFVTAVKSFGVFVAFYNNVKALLPKSESRLAPGATVE--TNFYIGQVLQCT 569

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            V+S++   + + + L+     I +K       N +  +  GD+V G   K+   +  + +
Sbjct: 570  VISVDASAEKMVVSLKHNDPFIQEKLTI----NQEKALEIGDVVHGHFEKLSGDIINVKL 625

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
            +               N+ V+       + + +  +   I +T       +       D 
Sbjct: 626  E--------------NNLLVNINQKHLSDFEIINEQWANILKTASNDLQFQDLFVYEKDK 671

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
               T ++ L   +   G+ +    +L   M+  G V +V S G F+ +S  ++  V   +
Sbjct: 672  KLQTFNTSLKQVIH--GRKITSFNELKVGMVFGGTVSHVMSYGLFVCISPGVNGLVPNGH 729

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLS---VEPLSKRVE-----VTLKTSDSRTASQSEINN 1451
            L+D Y+  P + + + + +  +V +   V  L K V      + ++ +D     +  IN 
Sbjct: 730  LADNYISDPSEMYSVHQSLIVKVKTSAKVCLLGKNVRSVFGSLGIEHNDPFIQEKLTINQ 789

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1502
               L +GD+V G  +++    + + +EN  LV       +++ H+ + E I
Sbjct: 790  EKALEIGDVVHGHFEKLSGDIINVKLENNLLV------NINQKHLSDFEII 834


>gi|427793247|gb|JAA62075.1| Putative rrna processing protein rrp5, partial [Rhipicephalus
            pulchellus]
          Length = 1840

 Score =  292 bits (747), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 190/518 (36%), Positives = 278/518 (53%), Gaps = 72/518 (13%)

Query: 1436 LKTSDSRTASQS-------EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
            L T +SR   +S       EI  LS+L VG  + G +K V  +G F+T+    +VGL  +
Sbjct: 1361 LSTRESRLHPESCKDVEDKEIVALSSLTVGTTLRGFVKTVNKHGCFVTV-GCGVVGLIPL 1419

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1548
            S+L   H+       + GE V V + K+   +RR+ LG+      N              
Sbjct: 1420 SKLPA-HLQRSHKAMKIGELVSVVVKKIQASERRLFLGLVHRMQANT------------- 1465

Query: 1549 EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQP-- 1606
                   +  R   L NSS      D   +                   ++ LDD  P  
Sbjct: 1466 -------TLPRKRKLSNSSTDEPIFDSSEK-------------------KIKLDDPLPRL 1499

Query: 1607 DMDNGISQN-QGHTDEAKTIDE-----------------KNNRHAKKKEKEEREQEIRAA 1648
            ++D G S + +   D  K ++E                 K +R   ++E+E+ E ++R  
Sbjct: 1500 NLDEGFSWDVEATPDLGKLLEERPAVNSSDDEDGDDGSAKKSRKEIRQEREQAEAQLRKK 1559

Query: 1649 EERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1707
            E  L++    P T D+F+RLV  SPNSS VW++YMAF L  A++EKAR++A RAL  I+ 
Sbjct: 1560 ERMLVDPSREPETVDDFDRLVLVSPNSSIVWLRYMAFHLRQAEIEKARAVARRALSCIDF 1619

Query: 1708 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1767
            REE EKLN+W A  NLE+ YG   ++++  VF+ ALQ+ +P KV++ L  +Y    + + 
Sbjct: 1620 REEQEKLNVWTALLNLEHLYGT--QDSLDSVFKEALQFNEPLKVYMHLAQIYVEGNKREQ 1677

Query: 1768 ADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAI 1826
            A++L  +M+ KFK    VWL      +K  Q E  +A++QRAL SLP  +HI  I++ A 
Sbjct: 1678 AEQLYKQMLNKFKQHADVWLSFGLFYMKCGQVEACRALLQRALKSLPSREHIVLITKFAQ 1737

Query: 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886
            +EFK G A+RG+SMF+ IL  YPKRTDLW +Y+D   +LGDVD  R  FE+A SL+L PK
Sbjct: 1738 MEFKYGDAERGQSMFDSILDNYPKRTDLWIVYVDILTKLGDVDNARKTFEKATSLNLNPK 1797

Query: 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            KMK LFKK+L++EK  G+    E VKQ+A++YV+   A
Sbjct: 1798 KMKSLFKKWLDFEKEHGDASLCEVVKQRAVQYVQERTA 1835



 Score =  201 bits (510), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 220/913 (24%), Positives = 398/913 (43%), Gaps = 83/913 (9%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP---ILDNEIEANEDN- 181
           +T++ ++ G+ + G V +V E  L + LPG + G     +   P   +L    +  +D  
Sbjct: 81  LTIRLLAEGLVVLGRVQQVQEFGLRVSLPGAITGRVSLTNISQPYSLLLRQFAQGVQDRT 140

Query: 182 --LLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
             +LP   +F  GQ V C V+     +    K  + LSL  + +   ++   +Q+GMVL 
Sbjct: 141 TEILPLQKLFQEGQTVVCKVIAAAPVEWGSSKVSVELSLDPAAVNASMTPSVLQKGMVLQ 200

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSIDRTRK 292
           A V SIEDHGY +  G+   T FL +          N+G  +  G L+   V +     +
Sbjct: 201 AAVSSIEDHGYTMDCGVDGVTAFLSQAEATPFIKQCNAGHALAVGQLVPCAVLTNTGGGR 260

Query: 293 VVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF 352
            + L++ P TV+  +  +L+  S+D ++PG      V      G+++S+     G     
Sbjct: 261 ALQLTARPSTVNAPL--ELENFSLDYVLPGFRAEVTVIESQSEGLVVSW----NGIEACV 314

Query: 353 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYD 412
           H  +     +   D    + +   +L+V P      L   PYL   + P S    G I  
Sbjct: 315 HRSHLPGPWDSPEDITVGQTLVGTLLYVQP------LVQRPYLSLQK-PSSRAMFGAIRP 367

Query: 413 ------QSKVVRVDRG-LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 465
                  +KVV ++ G + L L+    P    A      VA+E+V         G  +  
Sbjct: 368 GALLEGAAKVVAIEAGAVHLRLE----PSGLRALCPRPLVADEDVEDARDFVTAGERLSC 423

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
           R++   +++ +    LK S       T   + PG   +  V  +   G +V     +   
Sbjct: 424 RVMALSYMDKVVVVSLKKSMLSEKYVTPDALVPGAKFECTVRQMQRSGILVSLSPWMAGF 483

Query: 526 CPLPHMSEFEIVKPGK-KFKVGAELVFRVLGVK----SKRITVTHKKTLVKSKLAILSSY 580
             + H+S      PG+ +  +G+ +  R+L V       R+ +T ++ LV SK  I++SY
Sbjct: 484 IQMLHVS-----GPGEEQPTLGSRVRCRLLNVDRSFDPPRLLLTCRRALVTSKRPIITSY 538

Query: 581 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
            +A    +T G I ++   G  V FYNG++G+ P  E+    G   +  Y  G+VV CR+
Sbjct: 539 DDAIPGKLTEGLIVRVTPQGLLVTFYNGIKGWVPSREMP-HSGHGTNVNYTEGKVVTCRV 597

Query: 641 MSSIPASRRINLSFMMKPTRVSEDD--------------LVKLGSLVSGVVDVVTPNAVV 686
           +   P+  R+ LS  + P    E++               +++G+LVSG V+        
Sbjct: 598 VDCQPSEERLTLSLKLAPKGEQEEEKQSAQEVTMSMKSGAMEVGTLVSGCVEAKVKGGFT 657

Query: 687 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 746
           V +  +     ++P +HL+D   H   ++ ++  G     L++  N S +L++S + SL+
Sbjct: 658 VRL--RTGESASLPKQHLSDFEPHCVRLQQLLAEGTNLTNLVIF-NSSESLVVSRRTSLV 714

Query: 747 NSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
           N+AQ+  L S    + P ++V G +   +  G  +   G + GF P     D    D SK
Sbjct: 715 NAAQRGLLVSHFEDMAPGTLVFGVLLAFVRHGMLLELPGGIRGFVPLKDVADEFITDASK 774

Query: 805 T-YYVGQSVRSNILDVNSETGRITLSLK-QSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
           + + +GQ +   +  V+SE  ++ LS   +SC      S M       E +A   + +  
Sbjct: 775 SGFSIGQCLVGRVTKVDSEKQQVWLSTSMRSCGEKNFGSTM-------ECLAAQLTDEEL 827

Query: 863 GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA 922
            S L+  +   +GS+I   V + ++   +V  +   +V    T   + G  + SGS  +A
Sbjct: 828 ISRLEQTQVPNVGSIIRVTVQDVDEENQLVHCKIAENVLSG-TAETIPGRNIASGSTHEA 886

Query: 923 AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 982
            +L  + A   V+L L    +   R  ++ ++ +   R+ ++ + L  H   N  V ++ 
Sbjct: 887 VVLHCSTAHSNVELCLDPQVV---RSVSAAKRTKPVLRRIQSGRVL--HLKPNHAVVLLH 941

Query: 983 ENYLVLSLPEYNH 995
             +L L +P  +H
Sbjct: 942 SGHLCL-VPTKSH 953



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 77/383 (20%), Positives = 150/383 (39%), Gaps = 69/383 (18%)

Query: 1067 VQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 1126
            V A +  ++ L+L++    G+ GR+H++ + D+     E+    F+ G  +   +I +  
Sbjct: 1123 VMAIVRSVEKLQLKITLENGYKGRVHVSFI-DENPKEGESPLKRFEPGDQLEVYVIER-- 1179

Query: 1127 KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDV----------SIGQRVTGYVYKVDN 1176
                         + P       I  +  F EC +          + G  V GY      
Sbjct: 1180 -------------VIPLHSRALAITGRRNFCECSLFPAEKNEFAPAPGSEVIGYFSHFSE 1226

Query: 1177 EWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRP 1236
               +  ++ +   +L +L+    PS L         G+AV   VL  ++       V+  
Sbjct: 1227 GSLVFALTHNKMGRLPVLNMDLPPSRLGYIHTELKAGQAVKVTVLRADESS-----VVEL 1281

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
             Q G++  +VD              +V G +    +GVG  V     H  G +  T   +
Sbjct: 1282 SQLGVTTLSVD-------------SVVNGYVVSARAGVGACVSLPLGH-RGTISIT---D 1324

Query: 1297 IC-----VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1351
            IC      +  ++ Y + ++++C +++I      T+H+            ST  S L  +
Sbjct: 1325 ICDDFSQAATLMANYIQERYLRCYIIDIDSET-NTYHL------------STRESRLHPE 1371

Query: 1352 V--DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
               D   K +  +  L+    ++G+VK V   GCF+ +   +   + LS L   +++   
Sbjct: 1372 SCKDVEDKEIVALSSLTVGTTLRGFVKTVNKHGCFVTVGCGVVGLIPLSKLP-AHLQRSH 1430

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRV 1432
            K   IG+LV+  V  ++   +R+
Sbjct: 1431 KAMKIGELVSVVVKKIQASERRL 1453



 Score = 48.5 bits (114), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 155/381 (40%), Gaps = 84/381 (22%)

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1261
            ++QEF  R  +  A+TG V S+    +   L+LR F  G+ D+T +I    +Q    EG 
Sbjct: 98   QVQEFGLRVSLPGAITGRV-SLTNISQPYSLLLRQFAQGVQDRTTEILP--LQKLFQEGQ 154

Query: 1262 IVGGRI---------------------SKILSGVGGLVVQIGPHLYGRVHFTELKNI--- 1297
             V  ++                     + + + +   V+Q G  L   V   E       
Sbjct: 155  TVVCKVIAAAPVEWGSSKVSVELSLDPAAVNASMTPSVLQKGMVLQAAVSSIEDHGYTMD 214

Query: 1298 CVSDPLSGYDE-------------------GQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            C  D ++ +                     GQ V C VL       G   ++L+ R S  
Sbjct: 215  CGVDGVTAFLSQAEATPFIKQCNAGHALAVGQLVPCAVLT---NTGGGRALQLTARPS-- 269

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-----SKGCFIMLSRKLDA 1393
                         V+ P   LE +E+ S + ++ G+   VT     S+G  ++    ++A
Sbjct: 270  ------------TVNAP---LE-LENFSLDYVLPGFRAEVTVIESQSEG-LVVSWNGIEA 312

Query: 1394 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1453
             V  S+L  G  +SPE +  +G+ + G +L V+PL +R  ++L+   SR           
Sbjct: 313  CVHRSHLP-GPWDSPE-DITVGQTLVGTLLYVQPLVQRPYLSLQKPSSRAM-------FG 363

Query: 1454 NLHVGDIVIGQIK--RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
             +  G ++ G  K   +E+  + + +E + L  LC    ++++ V++      AGE++  
Sbjct: 364  AIRPGALLEGAAKVVAIEAGAVHLRLEPSGLRALCPRPLVADEDVEDARDFVTAGERLSC 423

Query: 1512 KILKVDKEKRRISLGMKSSYF 1532
            +++ +    + + + +K S  
Sbjct: 424  RVMALSYMDKVVVVSLKKSML 444


>gi|335310117|ref|XP_001926809.2| PREDICTED: protein RRP5 homolog [Sus scrofa]
          Length = 1863

 Score =  292 bits (747), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/305 (49%), Positives = 214/305 (70%), Gaps = 11/305 (3%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERL--LEK---DAPRTP---DEFERLVRSSPNSSFV 1677
            DEK  +  KKK K+ERE E + AE+ L  LE+   D  R P   D+F+RLV SSPNSS +
Sbjct: 1554 DEKPEQATKKKSKKERELEKQKAEKELSRLEEALMDPGRQPESADDFDRLVLSSPNSSIL 1613

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1614 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1671

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1797
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1672 VFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRG 1731

Query: 1798 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            Q G    V+QRAL  LP+ +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1732 QAGASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1791

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1792 VYIDMIIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1851

Query: 1917 EYVES 1921
            EYVE+
Sbjct: 1852 EYVEA 1856


>gi|330929198|ref|XP_003302547.1| hypothetical protein PTT_14414 [Pyrenophora teres f. teres 0-1]
 gi|311322015|gb|EFQ89360.1| hypothetical protein PTT_14414 [Pyrenophora teres f. teres 0-1]
          Length = 1791

 Score =  291 bits (746), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 241/889 (27%), Positives = 445/889 (50%), Gaps = 73/889 (8%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARI 1121
            G+L    I  +K  +L ++      GRI ++E+ D   ++ +  N  ++FK+ + + AR+
Sbjct: 935  GTLTTVRIKTVKSTQLNVELAGNVLGRISVSELFDGWDSIPDKKNPTAHFKMNEKIQARV 994

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV------SIGQRVTGYVYK 1173
            + + +  + +  FL   S       V E+ +    +  E DV      + G   T +V  
Sbjct: 995  LGRHDARNFR--FLPITSRSNHKTPVYEMTANTDRIKTEADVLSLDKITPGSSHTAFVNN 1052

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            + + +  + IS +++ ++   D   E  +L   +  F +G A+   V +++     L L 
Sbjct: 1053 IADRYVWVNISANVRGRIDFFDLTEELEKLANVEENFPVGSALRVRVKAVDVAAGKLDLT 1112

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
                   ++ KT+ + +      I  G I+  R++KI      +VVQI   L   +   +
Sbjct: 1113 A---VSTVTGKTLSLQD------IKVGYILPARVTKIHEA--SIVVQINEKLAAPIFLEQ 1161

Query: 1294 LKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1353
            L +         YD  +  K KV ++ R       +++ + +   G+S+  S  LS+ + 
Sbjct: 1162 LAD--------DYDMAKPNKFKVGDVLRACV----IDIDIPNKKLGLSARPSRVLSSSLT 1209

Query: 1354 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1413
                 ++    L  + +V+G++K+V S G ++ L   ++A V +S+LSD Y++  +  F 
Sbjct: 1210 VRDPEIKDKNQLKVHQVVRGFIKHVASNGVYVRLGPHVEAYVRVSHLSDEYIKDWKSAFH 1269

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            + +LV G+++S +   +  +++LKTS  +  + +E     +L VG IV  +++ VE +G+
Sbjct: 1270 VDQLVTGKIISNKEDQRNPQMSLKTSVIQ-GNYTEPLEFGDLKVGQIVTARVRHVEDFGV 1328

Query: 1474 FITIENTNLV-GLCHVSELSEDHVDN--IETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            F+ ++N+N V GLCH+S+L+++ VD   I+ +Y+  + VK K++K++ ++R+IS  +K S
Sbjct: 1329 FLVVDNSNNVSGLCHISQLADNAVDKDKIKDMYKKDDIVKAKVVKIEPKQRKISFTLKYS 1388

Query: 1531 YFKNDADNLQM--SSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQI 1588
              K+D ++  M  +SE++  +  +  G       ++  SV       ES+D   L     
Sbjct: 1389 QIKDDGEDEDMEDASEDDLADDSDSDGGIELDEDIDMRSVK----SAESDDDVEL----- 1439

Query: 1589 ESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEE-------R 1641
               A     E N DDE            G      T+D    + A   + E+       +
Sbjct: 1440 ---ADADEAEDNSDDEDTQTPAQGLSTSGFDWTGATLDIDQQKRAADSDSEDDTPKKKKK 1496

Query: 1642 EQEIRAAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAE 1699
             ++    E+R  + DA  P++  ++ERL+   PNS+ +W++YM F   +  +EKAR +A 
Sbjct: 1497 SKKASIKEDRTGDLDAYGPQSVADYERLLLGQPNSAEMWVRYMVFQRELNKIEKARQVAR 1556

Query: 1700 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1759
            RAL TIN REE EKL++W A  +LEN++ +  ++ +  VF+ A Q  D +++H  ++ +Y
Sbjct: 1557 RALVTINPREEKEKLDVWTALLHLENDFAS--DDTIEGVFKEACQNNDSREMHERMIKIY 1614

Query: 1760 ERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQQQ----EGVQAVVQRALLSLP 1813
              + +   AD L   M+K   F    K WL     L+   Q       +A++QRA  S+ 
Sbjct: 1615 ISSGKLDKADSLYQSMMKNKSFTQDPKFWLSYAAFLMDVLQPPSASQARALLQRATQSVA 1674

Query: 1814 RHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1871
              +H     + A LEFK  NG A+RGR++FEG++  + K+ D+W +YL  E   GD D +
Sbjct: 1675 STQHRYLTQKFAALEFKSPNGDAERGRTIFEGLVDTFAKKGDVWDMYLMLEQSHGDEDKV 1734

Query: 1872 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            R LFER   +     +++ +FKK+ E+E  VG ++ +E VK    ++ E
Sbjct: 1735 RDLFERMTKVG-KSSRVRSVFKKWAEWENGVGSKKGVERVKMLEEQWRE 1782



 Score =  199 bits (505), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 199/763 (26%), Positives = 348/763 (45%), Gaps = 60/763 (7%)

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL-------- 171
           A  ++ KN+S G  + G + +++ +DLV+ LP  L G   L    D L+  L        
Sbjct: 141 AKGLSYKNLSTGTIVLGQIIDISHQDLVLALPNNLVGYVPLTAVCDKLNERLEKLLKDED 200

Query: 172 -DNEIEANEDNL----LPTIFHVGQLV-SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL 225
            D +  ++ED+     L  +F VGQ V +CI    +D+ +   ++++ LS+   L+ KGL
Sbjct: 201 SDKKEGSDEDDFEDVYLKDMFSVGQYVRACITATNEDNAR--ARKRLELSIDPKLVNKGL 258

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQG 282
           +   +    ++ A V S EDHG ++  GL   +  GFLP+  L        ++ G +   
Sbjct: 259 TKRKIPVNSMVQASVVSNEDHGLVMDLGLGDANLKGFLPKGELGPKIQHAKIQEGAVFMC 318

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLS 340
           +V  I+   ++V LS+D   V      +   +  +ID+ +PG  V   V     + ++  
Sbjct: 319 LVTGINSDGRIVKLSADHTKVGNVAKGNTLTEAPTIDVFLPGTAVDVLVADTTSSTLVGK 378

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL-- 396
            L     T D +H   T    +    Y    KV ARILF  P S  R VG++L  +++  
Sbjct: 379 ILGLIDATADAYHSGATEKAADVSQKYKIGTKVKARILFTCPDSEPRKVGVSLLDHVVSL 438

Query: 397 --------HNRAPPSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVA 446
                     R PP+ +  + ++ + +KVV+V    G   D+    V   A+++ +SD  
Sbjct: 439 STRMSGKPKERKPPTDLLPISNVVENAKVVKVAPAQGAFFDLGIKDVVGFAHISRLSDDK 498

Query: 447 EEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
            + + +   ++K  S  + RI+G+  L+G+    L+    +       D+K G VVKGKV
Sbjct: 499 VDAISEDSGQFKLDSTHKARIIGYNALDGMFQLSLEQKILDQPFLRIEDIKAGQVVKGKV 558

Query: 507 --IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR- 560
             +  D  GA   +++   G+  L P  H+++  +  P +KF+ G  +  RVL  +  R 
Sbjct: 559 HKLIADKTGAAAVLIRLADGITGLVPEAHLADLRLQHPERKFREGVPVTARVLYTEPARH 618

Query: 561 -ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
            I +T KK+LV S     ++Y   ++ L   G +  + ++G  VRFY  V+ + P +E+ 
Sbjct: 619 QIQLTLKKSLVNSDAKPWTNYEMLSEGLSGPGILVSVRRNGATVRFYGDVKAWLPVAEMS 678

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL-----VS 674
                + +  +  GQVVK RI+ S+ A  R  L     P  V  +      +L     VS
Sbjct: 679 EAFVDDATRHFTNGQVVKVRII-SVDAKERQLLVSCKDPAAVDSNREAAFNALNPSDIVS 737

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLD- 731
           G V   + ++  +  I  G  KG +   HL D    +  + MK  I+ G   ++L+VL  
Sbjct: 738 GTVLEKSDDSATLD-IGNGV-KGILRIGHLTDGSAKKDMSTMKK-IRIGGTLEELVVLTK 794

Query: 732 -NESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
             ++ +  +S K SL   A   +L      +     VHG+V  I+    FV     ++G 
Sbjct: 795 HGKTRSATVSNKPSLRKDAHASKLAISIEDVQAGETVHGFVRGILPDKIFVELGNGISGV 854

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +S+  +   ++ +      QS+ + +  V+   G   LS+K
Sbjct: 855 LFKSQLPEEMISEPNFGLRKDQSITARVTHVDVGKGFFWLSMK 897



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 23/181 (12%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSK-----GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
            +IED+    +V+G V  + +         I L+  +   V  ++L+D  ++ PE++F  G
Sbjct: 544  RIEDIKAGQVVKGKVHKLIADKTGAAAVLIRLADGITGLVPEAHLADLRLQHPERKFREG 603

Query: 1416 KLVAGRVLSVEPLSKRVEVTLK----TSDSRTASQSEINNLSNLHVGDIVIGQIKR---- 1467
              V  RVL  EP   ++++TLK     SD++  +  E+  LS    G  ++  ++R    
Sbjct: 604  VPVTARVLYTEPARHQIQLTLKKSLVNSDAKPWTNYEM--LSEGLSGPGILVSVRRNGAT 661

Query: 1468 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
            V  YG        ++     V+E+SE  VD+    +  G+ VKV+I+ VD ++R++ +  
Sbjct: 662  VRFYG--------DVKAWLPVAEMSEAFVDDATRHFTNGQVVKVRIISVDAKERQLLVSC 713

Query: 1528 K 1528
            K
Sbjct: 714  K 714



 Score = 48.1 bits (113), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 112/516 (21%), Positives = 211/516 (40%), Gaps = 73/516 (14%)

Query: 1039 LLLKAISETETSSSKRAKKKSSYD---VGSLVQ-AEITEIKP-----LELRLKFGIGFHG 1089
            LL   +S +   S K  ++K   D   + ++V+ A++ ++ P      +L +K  +GF  
Sbjct: 431  LLDHVVSLSTRMSGKPKERKPPTDLLPISNVVENAKVVKVAPAQGAFFDLGIKDVVGF-- 488

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE 1149
              HI+ ++DDK + +      FK+  T  ARII  +    M     ++LS++  +L    
Sbjct: 489  -AHISRLSDDKVDAISEDSGQFKLDSTHKARIIGYNALDGM-----FQLSLEQKIL---- 538

Query: 1150 IGSKLLFEECDVSIGQRVTGYVYKV--DNEWALLTISRHLKAQLFILDSAYEPS-ELQEF 1206
               +      D+  GQ V G V+K+  D   A   + R       ++  A+     LQ  
Sbjct: 539  --DQPFLRIEDIKAGQVVKGKVHKLIADKTGAAAVLIRLADGITGLVPEAHLADLRLQHP 596

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            +R+F  G  VT  VL     +  ++L L+  +  ++      +N  M             
Sbjct: 597  ERKFREGVPVTARVLYTEPARHQIQLTLK--KSLVNSDAKPWTNYEM------------- 641

Query: 1267 ISKILSGVGGLVV----QIGPHLYGRVH----FTELKNICVSDPLSGYDEGQFVKCKVLE 1318
            +S+ LSG G LV           YG V       E+    V D    +  GQ VK +++ 
Sbjct: 642  LSEGLSGPGILVSVRRNGATVRFYGDVKAWLPVAEMSEAFVDDATRHFTNGQVVKVRIIS 701

Query: 1319 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1378
            +    R        L S  D  +  ++ + + +             L+P+ IV G V   
Sbjct: 702  VDAKERQL------LVSCKDPAAVDSNREAAFNA------------LNPSDIVSGTVLEK 743

Query: 1379 TSKGCFIMLSRKLDAKVLLSNLSDGYVE---SPEKEFPI-GKLVAGRVLSVEPLSKRVEV 1434
            +     + +   +   + + +L+DG  +   S  K+  I G L    VL+    ++   V
Sbjct: 744  SDDSATLDIGNGVKGILRIGHLTDGSAKKDMSTMKKIRIGGTLEELVVLTKHGKTRSATV 803

Query: 1435 TLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            + K S  + A  S++  ++ ++  G+ V G ++ +    +F+ + N  + G+   S+L E
Sbjct: 804  SNKPSLRKDAHASKLAISIEDVQAGETVHGFVRGILPDKIFVELGN-GISGVLFKSQLPE 862

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            + +       R  + +  ++  VD  K    L MK+
Sbjct: 863  EMISEPNFGLRKDQSITARVTHVDVGKGFFWLSMKA 898



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 105/506 (20%), Positives = 190/506 (37%), Gaps = 73/506 (14%)

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
            + TG       +  + T  D+K G +   ++  V S    V+  G V     +  + +  
Sbjct: 912  MKTGEALVDPVDSKILTTDDIKFGTLTTVRIKTVKSTQLNVELAGNVLGRISVSELFDGW 971

Query: 536  IVKPGKK-----FKVGAELVFRVLGVKSKR-------ITVTHKKTLVKSKLAILSSYAEA 583
               P KK     FK+  ++  RVLG    R        + ++ KT V    A        
Sbjct: 972  DSIPDKKNPTAHFKMNEKIQARVLGRHDARNFRFLPITSRSNHKTPVYEMTANTDRIKTE 1031

Query: 584  TDRL----ITHG-----WITKIEKHGCFVRFYNGVQG----FAPRSELGLDPGCEPSSMY 630
             D L    IT G     ++  I     +V     V+G    F    EL      E +  +
Sbjct: 1032 ADVLSLDKITPGSSHTAFVNNIADRYVWVNISANVRGRIDFFDLTEELEKLANVEEN--F 1089

Query: 631  HVGQVVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVY 688
             VG  ++ R+ +   A+ +++L+ +   T   +S  D +K+G ++   V  +   ++VV 
Sbjct: 1090 PVGSALRVRVKAVDVAAGKLDLTAVSTVTGKTLSLQD-IKVGYILPARVTKIHEASIVVQ 1148

Query: 689  VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLIN 747
            +  K      I  E LAD  + A   K   K G      ++ +D  +  L LSA+ S + 
Sbjct: 1149 INEK--LAAPIFLEQLADDYDMAKPNK--FKVGDVLRACVIDIDIPNKKLGLSARPSRVL 1204

Query: 748  SAQ---QLPS--DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
            S+    + P   D + +  + VV G++ ++   G +VR    +  +   S   D    D 
Sbjct: 1205 SSSLTVRDPEIKDKNQLKVHQVVRGFIKHVASNGVYVRLGPHVEAYVRVSHLSDEYIKDW 1264

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
               ++V Q V   I+    +     +SLK S                            N
Sbjct: 1265 KSAFHVDQLVTGKIISNKEDQRNPQMSLKTSVIQG------------------------N 1300

Query: 863  GSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE------- 915
             +E        +G ++  +V    DFGV +  +  ++V G     QLA   V+       
Sbjct: 1301 YTEPLEFGDLKVGQIVTARVRHVEDFGVFLVVDNSNNVSGLCHISQLADNAVDKDKIKDM 1360

Query: 916  --SGSVIQAAILDVAKAERLVDLSLK 939
                 +++A ++ +   +R +  +LK
Sbjct: 1361 YKKDDIVKAKVVKIEPKQRKISFTLK 1386


>gi|332212080|ref|XP_003255151.1| PREDICTED: protein RRP5 homolog [Nomascus leucogenys]
          Length = 1804

 Score =  290 bits (742), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 148/331 (44%), Positives = 223/331 (67%), Gaps = 16/331 (4%)

Query: 1593 SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERL 1652
            ++PPL  + D E+ +  +  +Q            +K ++  ++ EK++ E+E+   EE L
Sbjct: 1481 ALPPLAESSDSEEDEKPHQATQ------------KKKSKKERELEKQKAEKELSRIEEAL 1528

Query: 1653 LEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1711
            ++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE 
Sbjct: 1529 MDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQ 1588

Query: 1712 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1771
            EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ + A EL
Sbjct: 1589 EKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGEL 1646

Query: 1772 LYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFK 1830
              +M+K+F+    VW++    LL++ Q G    V+QRAL  LP  +H+  I++ A LEF+
Sbjct: 1647 YNRMLKRFRQEKAVWIKYGAFLLRRSQAGASHRVLQRALECLPSKEHVDVIAKFAQLEFQ 1706

Query: 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1890
             G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF
Sbjct: 1707 LGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKF 1766

Query: 1891 LFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
             FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 1767 FFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1797



 Score =  281 bits (718), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 192/627 (30%), Positives = 317/627 (50%), Gaps = 49/627 (7%)

Query: 54  FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK-----KKTERKANETVDD 106
           FPRGG   + + E+  +   E D  F+ + E G  K+ K +K     KK + +  E++  
Sbjct: 8   FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRESIKS 67

Query: 107 LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
               F              ++++++  GM++ G V EVNE +LVI LP GL+G  +  + 
Sbjct: 68  AREKF------------EILSVESLCEGMRILGCVKEVNELELVISLPNGLKGFVQVTEI 115

Query: 167 LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
            D      NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL   
Sbjct: 116 CDAYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPK 173

Query: 220 LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
            + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  +
Sbjct: 174 NVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKL 233

Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
           K G  L  +V  +     VV LS+    VS  +  + +  +++ L+PG++V  +VQ +  
Sbjct: 234 KVGQYLNCIVEKVKGNGGVVSLSTGHSEVSTAIATEEQSWNLNNLLPGLVVKAQVQKVTP 293

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
            G+ L+FLT+FTG VD  HL                  V A IL + P +R V L+L P 
Sbjct: 294 FGLTLNFLTFFTGVVDFMHLD--------PXXXXXXXXVRACILCIHPRTRVVRLSLRPI 345

Query: 395 LLHNRAPPSHVKV---GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
            L    P + +     G + D   V    +  G    +    +   AY  +S +++ +  
Sbjct: 346 FLQPGRPLTRLSCQNFGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNV 402

Query: 452 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
              + +K G+  + RI+ +  ++ LA   L+ S  E     + D++PG VVKG V+ + S
Sbjct: 403 FNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIQPGAVVKGTVLTIKS 462

Query: 512 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
           +G +V+    ++ L P  H+++  +  P KK+ +G E+  RVL    ++K++ +T KKTL
Sbjct: 463 YGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTL 522

Query: 570 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
           ++SKL +++ YA+A   L THG+I +++ +GC V+FYN VQG  P+ EL  +   +P  +
Sbjct: 523 IESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERV 582

Query: 630 YHVGQVVKCRIMSSIPASRRINLSFMM 656
           ++ GQVVK  +++  P+  R+ LSF +
Sbjct: 583 FYTGQVVKVAVLNCEPSKERMLLSFKL 609



 Score =  150 bits (380), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 245/1033 (23%), Positives = 414/1033 (40%), Gaps = 182/1033 (17%)

Query: 513  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--------LGVKSKRITVT 564
            GA  +   GV A   L H+S+ + V   + FK G     R+        L + S R ++ 
Sbjct: 378  GATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSII 437

Query: 565  HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 624
              + L          Y +     +  G +  I+ +G  V+    ++G  P   L      
Sbjct: 438  EAQYL---------RYHDIQPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMK 488

Query: 625  EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV-------KLGSLVSGVV 677
             P   YH+G  VKCR++   P ++++ ++  +K T +     V       K G    G +
Sbjct: 489  NPEKKYHIGDEVKCRVLLCDPEAKKLMMT--LKKTLIESKLPVITCYADAKPGLQTHGFI 546

Query: 678  DVVTPNAVVV--YVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 734
              V     +V  Y   +G   K  + TE++ D  E       V+K       + VL+ E 
Sbjct: 547  IRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDP-ERVFYTGQVVK-------VAVLNCEP 598

Query: 735  SN--LLLSAKYS------------------LINSAQQL---------------PSDASHI 759
            S   +LLS K S                   IN  Q L               P + S I
Sbjct: 599  SKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLLCRKPALVSTVEGGQDPKNFSEI 658

Query: 760  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
            HP  ++ G+V +I + G F++F   L+G AP++   D      S  +  GQ+V + + +V
Sbjct: 659  HPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNV 718

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIAMLQS--SKHNGSELKWVEGFIIG 875
            + E  R+ LSL+ S C   D +      L +  E++  ++S  S  +   ++ +     G
Sbjct: 719  DEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQGVRSLMSNRDSVLIQTLAEMTPG 778

Query: 876  SVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLV 934
              ++  V E   D  VV S     D+    + +  AG  VESG   +  IL+V   +  V
Sbjct: 779  MFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAGQEVESGQKKKVVILNVDLLKLEV 838

Query: 935  DLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYN 994
             +SL    +        NR+A+K ++  E       HQ   AIV+ +++++ + SL E  
Sbjct: 839  HVSLHQDLV--------NRKAKKLRKGSE-------HQ---AIVQHLEKSFAIASLVETG 880

Query: 995  HSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 1053
            H   ++  S  N T +F  ++   GQ V  T+       T   LLL ++  +   T    
Sbjct: 881  HLAAFSLSSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGVTG--LLLAVEGPAAKRTMRPT 938

Query: 1054 RAK-------------------KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
            R                     KK +  +G +V   +  IKP  + +    G  G IH +
Sbjct: 939  RKDSETVDEDEEVDPSLTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHAS 998

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW-------------ELSIK 1141
             + DD         +  K+G+TVTAR+I      DM K+F +             ELS++
Sbjct: 999  HILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFKYLPISHPRFVRTIPELSVR 1053

Query: 1142 PSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVDNEWALLTISRHLKAQLFIL 1194
            PS L    T     S    E+      GQ VT ++  Y V  +W  + I+  ++ ++ +L
Sbjct: 1054 PSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLL 1113

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
             ++     L+   ++F +G+A+   V+  +  K  L L L             I    ++
Sbjct: 1114 LTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLCLSL-------------IGPHKLE 1160

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                EG++  GR+ K+     GL V       G      + +     PL  +   + V+C
Sbjct: 1161 ----EGEVAMGRVVKVTPN-EGLTVSFPFGKIGTASIFHMSDSYSETPLEDFVPQKVVRC 1215

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
             +L  +  V     + LSLR      SS  + +  + V+ P   +  I+D+    +++GY
Sbjct: 1216 YILSTADNV-----LTLSLR------SSRTNPETKSKVEDP--EINSIQDIKEGQLLRGY 1262

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE------FPIGKLVAGRVLSVEPL 1428
            V ++   G F  L   +      SN+S     SP K+       P GKL+  RVL +   
Sbjct: 1263 VGSIQPHGVFFRLGPSVVGLARYSNVSQ---HSPSKKALYNKHLPEGKLLTARVLRLNHQ 1319

Query: 1429 SKRVEVTLKTSDS 1441
               VE++    D+
Sbjct: 1320 KNLVELSFLPGDT 1332



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 128/306 (41%), Gaps = 52/306 (16%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            I  G +V G +  I S   G++V++G  + G V    L +I + +P   Y  G  VKC+V
Sbjct: 447  IQPGAVVKGTVLTIKSY--GMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRV 504

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L      +    + ++L+ +L              +++    +    D  P +   G++ 
Sbjct: 505  LLCDPEAK---KLMMTLKKTL--------------IESKLPVITCYADAKPGLQTHGFII 547

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             V   GC +     +   V    LS  Y+  PE+ F  G++V   VL+ EP  +R+ ++ 
Sbjct: 548  RVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSF 607

Query: 1437 KTSD--------------------------------SRTASQSEINNLSNLHVGDIVIGQ 1464
            K S                                 S      +  N S +H G ++IG 
Sbjct: 608  KLSSDPEPKKEPAGHSQKKGKAINIGQLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGF 667

Query: 1465 IKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1524
            +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V  K+  VD+EK+R+ 
Sbjct: 668  VKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRML 726

Query: 1525 LGMKSS 1530
            L ++ S
Sbjct: 727  LSLRLS 732



 Score = 80.9 bits (198), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 137/600 (22%), Positives = 245/600 (40%), Gaps = 66/600 (11%)

Query: 379 FVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 438
             D   ++V L+LNP  ++       +K G +   +     D G   L+DI      T A
Sbjct: 158 ITDRGKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHGY--LVDIGVD--GTRA 213

Query: 439 YVTISDVAEEEVRKLEK--KYKEG---SCVRVRILGFRHLEGLATG---ILKASAFEGLV 490
           ++ +   A+E +R+  K  K K G   +C+  ++ G   +  L+TG   +  A A E   
Sbjct: 214 FLPLLK-AQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSTGHSEVSTAIATEEQS 272

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           +  +++ PG+VVK +V  V  FG  + F      +    H+             V A ++
Sbjct: 273 WNLNNLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPXXXXX---XXXVRACIL 329

Query: 551 F-----RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
                 RV+ +  + I +   + L +       ++    D +   G+    +K G   R 
Sbjct: 330 CIHPRTRVVRLSLRPIFLQPGRPLTRLSC---QNFGAVLDDVPVQGFF---KKAGATFRL 383

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
            +GV  +A  S L           +  G   KCRI   I  S+   L+ +   T + E  
Sbjct: 384 KDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRI---IDYSQMDELALLSLRTSIIEAQ 440

Query: 666 LVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
            ++      G++V G V  +    ++V V  +   +G +P  HLAD L     MK+  K 
Sbjct: 441 YLRYHDIQPGAVVKGTVLTIKSYGMLVKVGEQ--MRGLVPPMHLADIL-----MKNPEKK 493

Query: 721 GYEFDQL----LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
            +  D++    L+ D E+  L+++ K +LI S   + +  +   P    HG++  + + G
Sbjct: 494 YHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVKDYG 553

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC-- 834
           C V+F   + G  P+ +       D  + +Y GQ V+  +L+      R+ LS K S   
Sbjct: 554 CIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFKLSSDP 613

Query: 835 --------CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
                    S      +    LL  K A++ S+   G + K       G ++ G V    
Sbjct: 614 EPKKEPAGHSQKKGKAINIGQLLCRKPALV-STVEGGQDPKNFSEIHPGMLLIGFVKSIK 672

Query: 887 DFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
           D+GV + F   S + G      ++   V S       G  + A + +V + ++ + LSL+
Sbjct: 673 DYGVFIQFP--SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLR 730



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 147/324 (45%), Gaps = 46/324 (14%)

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRISKI 1270
            V   +L I+   +++RL LRP           +S  N    + +  + G     G   ++
Sbjct: 324  VRACILCIHPRTRVVRLSLRPIFLQPGRPLTRLSCQNFGAVLDDVPVQGFFKKAGATFRL 383

Query: 1271 LSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
              GV           Y R+ H ++ KN  V +P   +  G   KC++++ S+        
Sbjct: 384  KDGVLA---------YARLSHLSDSKN--VFNP-EAFKPGNTHKCRIIDYSQMDELAL-- 429

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
             LSLR+S+                   ++L +  D+ P  +V+G V  + S G  + +  
Sbjct: 430  -LSLRTSI----------------IEAQYL-RYHDIQPGAVVKGTVLTIKSYGMLVKVGE 471

Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE- 1448
            ++   V   +L+D  +++PEK++ IG  V  RVL  +P +K++ +TLK    +T  +S+ 
Sbjct: 472  QMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLK----KTLIESKL 527

Query: 1449 --INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
              I   ++   G    G I RV+ YG  +   N N+ GL    ELS +++ + E ++  G
Sbjct: 528  PVITCYADAKPGLQTHGFIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFYTG 586

Query: 1507 EKVKVKILKVDKEKRRISLGMKSS 1530
            + VKV +L  +  K R+ L  K S
Sbjct: 587  QVVKVAVLNCEPSKERMLLSFKLS 610



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 74/136 (54%), Gaps = 13/136 (9%)

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS-----EINNLS 1453
            ++SD Y E+P ++F   K+V   +LS       + ++L++S +   ++S     EIN++ 
Sbjct: 1194 HMSDSYSETPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPETKSKVEDPEINSIQ 1251

Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA----GEKV 1509
            ++  G ++ G +  ++ +G+F  +   ++VGL   S +S+ H  + + +Y      G+ +
Sbjct: 1252 DIKEGQLLRGYVGSIQPHGVFFRL-GPSVVGLARYSNVSQ-HSPSKKALYNKHLPEGKLL 1309

Query: 1510 KVKILKVDKEKRRISL 1525
              ++L+++ +K  + L
Sbjct: 1310 TARVLRLNHQKNLVEL 1325


>gi|395742011|ref|XP_002821182.2| PREDICTED: LOW QUALITY PROTEIN: protein RRP5 homolog [Pongo abelii]
          Length = 1839

 Score =  289 bits (740), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 147/305 (48%), Positives = 210/305 (68%), Gaps = 11/305 (3%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------APRTPDEFERLVRSSPNSSFV 1677
            DEK ++  KKK K+ERE E + AE+ L   +         P + D+F+RLV SSPNSS +
Sbjct: 1530 DEKPHQATKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSIL 1589

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ K
Sbjct: 1590 WLQYMAFHLQAMEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTK 1647

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ 1797
            VF+RA+QY +P KV L L  +Y ++E+ + A EL  +M+K+F+    VW++    LL++ 
Sbjct: 1648 VFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRS 1707

Query: 1798 QEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            Q      V+QRAL  LP  +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS
Sbjct: 1708 QAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS 1767

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
            +Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+
Sbjct: 1768 VYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL 1827

Query: 1917 EYVES 1921
            EYVE+
Sbjct: 1828 EYVEA 1832



 Score =  236 bits (602), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 251/993 (25%), Positives = 444/993 (44%), Gaps = 121/993 (12%)

Query: 513  GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV----KSKRITVTHKKT 568
            GA  +   GV A   L H+S+ + V   + FK G     R++      ++ ++ +T KKT
Sbjct: 433  GATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDXLCDPEAXKLMMTLKKT 492

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            L++SKL +++ YA+A   L  HG+I +++ +GC V+FYN VQG  P+ EL  +   +P  
Sbjct: 493  LIESKLPVITCYADAKPGLQIHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPER 552

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVD 678
            +++ GQVVK  +++  P+  R+ LSF +        +P   S+     + +G LV   V 
Sbjct: 553  VFYTGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINVGQLVDVKVL 612

Query: 679  VVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLL 738
              T + + V V+     +  +PT HL+DH+ +  ++   ++ G    ++L L     ++L
Sbjct: 613  EKTKDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGHVL 671

Query: 739  LSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            L  K +L+++ +  Q P + S IHP  ++ G+V +I + G F++F   L+G AP++   D
Sbjct: 672  LCRKPALVSTVEGGQDPKNFSEIHPGMLLTGFVKSIKDYGVFIQFPSGLSGLAPKAIMSD 731

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE--EKIA 854
                  S  +  GQ+V + + +V+ E  R+ LSL+ S C   D +      L +  E++ 
Sbjct: 732  KFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEELQ 791

Query: 855  MLQS--SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAG 911
             ++S  S  +   ++ +     G  ++  V E   D  VV S     D+    + +  AG
Sbjct: 792  GVRSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLRASRYHRAG 851

Query: 912  ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
              VESG   +  IL+V   +  V +SL    +        NR+A+K ++  E       H
Sbjct: 852  QEVESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKAKKLRKGSE-------H 896

Query: 972  QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
            Q   AIV+ +++++ + SL E  H   ++  S  N T +F  ++   GQ V  T+     
Sbjct: 897  Q---AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEP 953

Query: 1031 SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 1071
              T   LLL ++  +   T    R                     KK +  +G +V   +
Sbjct: 954  GVTG--LLLAVEGPAAKRTMRPTRKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTV 1011

Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
              IKP  + +    G  G IH + + DD         +  K+G+ VTAR+I      DM 
Sbjct: 1012 KSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKMVTARVIGGR---DM- 1066

Query: 1132 KSFLW-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV-- 1171
            K+F +             ELS++PS L    T     S    E+      GQ VT ++  
Sbjct: 1067 KTFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPVEKIKQYQAGQTVTCFLKK 1126

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
            Y V  +W  + I+  ++ ++ +L ++     L+   ++F +G+A+   V+  +  K  L 
Sbjct: 1127 YNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKAFLC 1186

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
            L L             I    ++    EG++  GR+ K+     GL V       G V  
Sbjct: 1187 LSL-------------IGPHKLE----EGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSI 1228

Query: 1292 TELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1351
              + +     PL  +   + V+C +L  +  V     + LSLR      SS  + +  + 
Sbjct: 1229 FHMSDSYSEMPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSK 1277

Query: 1352 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP--- 1408
            V+ P   +  I+D+    +++GY+ ++   G F  L   +      S++S   +      
Sbjct: 1278 VEDP--EINSIQDIKEGQLLRGYIGSIQPHGVFFRLGPSVVGLARYSHVSQHSLSKKALY 1335

Query: 1409 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
             K  P GKL+  RVL +      VE++    D+
Sbjct: 1336 NKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT 1368



 Score =  176 bits (445), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 155/518 (29%), Positives = 244/518 (47%), Gaps = 45/518 (8%)

Query: 54  FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGL--HKKNKKKKKKTERKANETVDDLGS 109
           FPRGG   + + E+  +   E D  F+ + E G    KKN+K   KT++   E  +    
Sbjct: 60  FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKNQKGPAKTKKLKIEKRE---- 115

Query: 110 LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
                 S K  R   +I +++++  GM++ G V EVNE +LVI LP GL+G  +  +  D
Sbjct: 116 ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 169

Query: 169 PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
                 NE    E  L     LP +F  G LV C+V  L    +  GK+ + LSL    +
Sbjct: 170 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 227

Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
            + LS E ++ GM+LT  + S+EDHGY++  G+     FLP     E     N G  +K 
Sbjct: 228 NRVLSAEALKPGMLLTGTISSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 287

Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
           G  L  +V  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ +   G
Sbjct: 288 GQYLNCIVEKVKGNGGVVSLSIGHSEVSTAIATEEQSWNLNNLLPGLVVKAQVQKVTPFG 347

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
           + L+FLT+FTG VD  HL      T + N     + V A IL V P +R V L+L P  L
Sbjct: 348 LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVRLSLRPIFL 402

Query: 397 HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
               P + +   K+G + D   V    +  G    +    +   AY  +S +++ +    
Sbjct: 403 QPGRPLTRLSCQKLGAVLDDIPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 459

Query: 454 EKKYKEGSCVRVRILG-FRHLEGLATGI-LKASAFEG---LVFTHSDVKPGMVVKGKVIA 508
            + +K G+  + RI+      E     + LK +  E    ++  ++D KPG+ + G +I 
Sbjct: 460 PEAFKPGNTHKCRIIDXLCDPEAXKLMMTLKKTLIESKLPVITCYADAKPGLQIHGFIIR 519

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
           V  +G IV+F   V+ L P   +S   I  P + F  G
Sbjct: 520 VKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTG 557



 Score = 47.4 bits (111), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 20/187 (10%)

Query: 1355 PGKHL-----EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESP 1408
            PG+ L     +K+  +  ++ VQG+ K     G    L   + A   LS+LSD   V +P
Sbjct: 404  PGRPLTRLSCQKLGAVLDDIPVQGFFKKA---GATFRLKDGVLAYARLSHLSDSKNVFNP 460

Query: 1409 EKEFPIGKLVAGRVLS--VEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIG 1463
            E  F  G     R++    +P + ++ +TLK    +T  +S+   I   ++   G  + G
Sbjct: 461  EA-FKPGNTHKCRIIDXLCDPEAXKLMMTLK----KTLIESKLPVITCYADAKPGLQIHG 515

Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
             I RV+ YG  +   N N+ GL    ELS +++ + E ++  G+ VKV +L  +  K R+
Sbjct: 516  FIIRVKDYGCIVKFYN-NVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERM 574

Query: 1524 SLGMKSS 1530
             L  K S
Sbjct: 575  LLSFKLS 581



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 18/259 (6%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G +V+   ++ G V   EL    + DP   +  GQ VK  VL          + E S   
Sbjct: 524  GCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVL----------NCEPSKER 573

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAK 1394
             L  +S   SSD     +  G   +K + ++   +V   V   T  G  + +L   + A 
Sbjct: 574  ML--LSFKLSSDPEPKKEPAGHSQKKGKAINVGQLVDVKVLEKTKDGLEVAVLPHNIRAF 631

Query: 1395 VLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE-INN 1451
            +  S+LSD     P        G ++  RVL +      V +  K +   T    +   N
Sbjct: 632  LPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGHVLLCRKPALVSTVEGGQDPKN 690

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
             S +H G ++ G +K ++ YG+FI    + L GL   + +S+  V +    +  G+ V  
Sbjct: 691  FSEIHPGMLLTGFVKSIKDYGVFIQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVA 749

Query: 1512 KILKVDKEKRRISLGMKSS 1530
            K+  VD+EK+R+ L ++ S
Sbjct: 750  KVTNVDEEKQRMLLSLRLS 768



 Score = 42.0 bits (97), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S++ PGM++ G V ++  +G  +QFP G+  L P   MS+  +      F  G  +V +V
Sbjct: 692 SEIHPGMLLTGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKV 751

Query: 554 LGVKSKR 560
             V  ++
Sbjct: 752 TNVDEEK 758



 Score = 40.4 bits (93), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 104/209 (49%), Gaps = 22/209 (10%)

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFI 1385
            F V  +LR+++ G  S+ +  L   +  P K LE+ E      +  G V  VT ++G  +
Sbjct: 1165 FRVGQALRATVVGPDSSKAF-LCLSLIGPHK-LEEGE------VAMGRVVKVTPNEGLTV 1216

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
                     V + ++SD Y E P ++F   K+V   +LS       + ++L++S +   +
Sbjct: 1217 SFPFGKIGTVSIFHMSDSYSEMPLEDFVPQKVVRCYILSTA--DNVLTLSLRSSRTNPET 1274

Query: 1446 QS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
            +S     EIN++ ++  G ++ G I  ++ +G+F  +   ++VGL   S +S+ H  + +
Sbjct: 1275 KSKVEDPEINSIQDIKEGQLLRGYIGSIQPHGVFFRL-GPSVVGLARYSHVSQ-HSLSKK 1332

Query: 1501 TIYRA----GEKVKVKILKVDKEKRRISL 1525
             +Y      G+ +  ++L+++ +K  + L
Sbjct: 1333 ALYNKHLPEGKLLTARVLRLNHQKNLVEL 1361


>gi|189199792|ref|XP_001936233.1| rRNA biogenesis protein RRP5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983332|gb|EDU48820.1| rRNA biogenesis protein RRP5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1760

 Score =  288 bits (738), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 243/892 (27%), Positives = 430/892 (48%), Gaps = 116/892 (13%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARI 1121
            G+L    I  +K  +L ++      GRI ++E+ D   ++ +  N  ++FK+ + V AR+
Sbjct: 936  GTLTTVRIKTVKSTQLNVELADNVQGRISVSELFDGWDSIPDKKNPTAHFKMNEKVQARV 995

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL--LFEECDV------SIGQRVTGYVYK 1173
            + + +  + +  FL   S       V E+ +    +  E DV      + G   T +V  
Sbjct: 996  LGRHDARNFR--FLPITSRSNHKTPVYEMTANTDKIKREADVLSLDKITPGSSHTAFVNN 1053

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
            + + +  + IS +++           P +L            VTG  +S+          
Sbjct: 1054 IADRYVWVNISANVRG----------PGKLD-----LTAVSTVTGKTMSL---------- 1088

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
                QD                 I  G I+  R++KI      +VVQI   L   +   +
Sbjct: 1089 ----QD-----------------IKVGYILPARVTKIHEA--SIVVQINEKLAAPIFLEQ 1125

Query: 1294 LKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1353
            L +         YD  +  K KV ++ R       +++ + +   G+S+  S  LS+ + 
Sbjct: 1126 LAD--------DYDMAKPNKFKVGDVLRVCV----IDIDIPNKKLGLSARPSRVLSSSLT 1173

Query: 1354 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1413
                 ++    L  + +V+G++K+V S G ++ L   ++A V +S+LSD Y++  +  F 
Sbjct: 1174 VRDPEIKDKSQLKVHQVVRGFIKHVASNGVYVRLGPHVEAYVRVSHLSDEYIKDWKSAFH 1233

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            + +LV G+++S +   +  +++LKTS  +  + +E    S+L VG IV  +++ VE +G+
Sbjct: 1234 VDQLVTGKIISNKEDQRNPQMSLKTSVIQ-GNYTEPLEFSDLKVGQIVTAKVRHVEDFGV 1292

Query: 1474 FITIENT-NLVGLCHVSELSEDHVDN--IETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            F+ ++N+ N+ GLCH+S+L+++ VD   I+ +Y+  + VK KI+K++ ++R+IS  +K S
Sbjct: 1293 FLVVDNSSNVSGLCHISQLADNAVDKDKIKDMYKKDDVVKAKIVKIEPKQRKISFTLKYS 1352

Query: 1531 YFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV-----AVQDMDMESEDGGSLVL 1585
              K D ++  M    E DE  EE  S     L E+  +     A  D D+E  D      
Sbjct: 1353 QIKGDGEDEDMEDASE-DELAEESDSDGGIELDEDVDMRSVKSAESDNDVELADADEAED 1411

Query: 1586 AQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEE----- 1640
               +     P               G+S + G      T+D    +HA   + E      
Sbjct: 1412 DSDDEDIQTPA-------------QGLSTS-GFDWTGATLDADQQKHAADSDSENDTPKK 1457

Query: 1641 --REQEIRAAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1696
              + ++    E+R  + DA  P++  ++ERL+   PNS+ +W++YM F   + +VEKAR 
Sbjct: 1458 KKKSKKASIKEDRTGDLDAYGPQSVADYERLLLGQPNSAEMWVRYMVFQRELNEVEKARQ 1517

Query: 1697 IAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL 1756
            IA RAL TIN REE EKL++W A  +LEN++ +  ++ +  V + A Q  D +++H   +
Sbjct: 1518 IARRALATINPREEKEKLDVWTALLHLENDFAS--DDTIEAVLKEACQNNDSREMHERTI 1575

Query: 1757 GLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQQQ----EGVQAVVQRALL 1810
             +Y  + +   AD L   M+K   F    K WL     L+   Q       +A++QRA  
Sbjct: 1576 KIYISSGKLDKADSLYQSMMKNKSFTQDPKFWLSYAAFLMDVLQPPSASRARALLQRATQ 1635

Query: 1811 SLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1868
            S+  ++H     + A LEFK  NG A+RGR++FEG++  + K+ D+W +YL  E   GD 
Sbjct: 1636 SVASNQHRYLTQKFAALEFKSPNGDAERGRTIFEGLIDTFAKKGDVWDMYLMLEQSHGDE 1695

Query: 1869 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            D +R LFER   +     +++ +FKK+ E+E  VG ++ +E VK    ++ E
Sbjct: 1696 DKVRDLFERMTKVG-KSSRVRSVFKKWAEWENGVGNKKGVERVKTLEEQWRE 1746



 Score =  193 bits (490), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 200/758 (26%), Positives = 345/758 (45%), Gaps = 62/758 (8%)

Query: 129 KNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEAN------- 178
           + +SAG  + G + +++ +DLV+ LP  L G   L   +D L+  L+  ++         
Sbjct: 148 QKLSAGTIVLGQIIDISHQDLVLALPNNLVGYVPLTAVSDKLNERLEKLLKDEGAEKKEG 207

Query: 179 ------EDNLLPTIFHVGQLV-SCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQ 231
                 ED  L  +F VGQ + +CI    +D+ +   ++++ LS+   L+ KGL+   + 
Sbjct: 208 SEDGDFEDVDLKDMFSVGQYIRACITATNEDNAR--ARKRLELSIDPKLVNKGLTKRKIP 265

Query: 232 EGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSID 288
              ++ A V S EDHG ++  GL   +  GFLP+  L        V+ G +   +V  I+
Sbjct: 266 VNSMVQASVVSNEDHGLVMDLGLGDANLKGFLPKGELGPKIQHAKVQEGAVFMCLVTGIN 325

Query: 289 RTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 345
              ++V LS+D  T +  +TK     +  +ID+ +PG  V   V     + ++   L   
Sbjct: 326 SDGRIVKLSAD-HTKAGNITKGNTLTEAPTIDVFLPGTAVDILVADTTSSTLVGKILGLI 384

Query: 346 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL------- 396
             T D +H   T    +    Y    KV ARILF  P S  R VG++L  +++       
Sbjct: 385 DATADAYHSGATEKAADVSQKYKIGSKVKARILFTCPNSEPRKVGVSLLDHVVSLSTRMS 444

Query: 397 ---HNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAEEEVR 451
                R PP   + +  I + +KVV+V    G   D+    V   A+++ +SD   + + 
Sbjct: 445 GKPKERKPPIDLLPISTIVESAKVVKVAPAQGAFFDLGIKDVVGFAHISRLSDDKVDVIS 504

Query: 452 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAV 509
           +   ++K  S  + RI+G+  L+G+    L+    +       D++ G VVKGKV  +  
Sbjct: 505 EESGQFKLDSTHKARIIGYNALDGIFQLSLEQKVLDQPFLRIEDIQAGQVVKGKVHKLIA 564

Query: 510 DSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVT 564
           D  GA   +V    G+  L P  H+++  +  P +KF+ G  +  RVL  +  R  I +T
Sbjct: 565 DKTGAAAVLVHLADGITGLVPEAHLADVRLQHPERKFREGVPVTARVLYTEPARHQIQLT 624

Query: 565 HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 624
            KK+LV S     ++Y   ++ L   G +T + ++G  VRFY  V+ + P +E+      
Sbjct: 625 LKKSLVNSDTKPWTNYEMLSEGLTGPGILTSVRRNGATVRFYGDVKAWLPAAEMSEAFIN 684

Query: 625 EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL-----VSGVVDV 679
           + +  +  GQVVK RI+ S+ A  R  L     P  V  +      +L     V G V  
Sbjct: 685 DATRHFTNGQVVKVRII-SVDAKERQLLVSCKDPAAVDNNREAAFNALNPSDIVKGTVLE 743

Query: 680 VTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLD--NESS 735
            + ++  +  I  G  KG +   HL D    +  + MK  I+ G   ++L+VL    ++ 
Sbjct: 744 KSDDSATLD-IGNGV-KGILRIGHLTDGSAKKDISTMKK-IRIGGTLEELVVLTKHGKTR 800

Query: 736 NLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
           +  +S K SL   AQ  +L      +     VHG+V  I+    FV     ++G   +S+
Sbjct: 801 SATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGILPDKIFVELGNGISGVLFKSQ 860

Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             +   ++ +      QS+ + +  V+   G   LS+K
Sbjct: 861 LPEEMISEPNFGLRKDQSISARVTHVDVGKGFFWLSMK 898



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 158/761 (20%), Positives = 312/761 (40%), Gaps = 100/761 (13%)

Query: 796  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
            D +  DL   + VGQ +R+ I   N +  R    L+ S     D   + +  L + KI  
Sbjct: 212  DFEDVDLKDMFSVGQYIRACITATNEDNARARKRLELSI----DPKLVNKG-LTKRKIP- 265

Query: 856  LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAG--- 911
                              + S+++  V  + D G+V+      +++ GF+   +L     
Sbjct: 266  ------------------VNSMVQASVVSNEDHGLVMDLGLGDANLKGFLPKGELGPKIQ 307

Query: 912  -ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK-DLG 969
             A V+ G+V    +  +    R+V LS          + N+  +A         +  D+ 
Sbjct: 308  HAKVQEGAVFMCLVTGINSDGRIVKLSADHTKAGNITKGNTLTEAPTIDVFLPGTAVDIL 367

Query: 970  VHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP 1029
            V  T ++ + + K   L+ +  +  HS      +D +      +++  G  V A ++   
Sbjct: 368  VADTTSSTL-VGKILGLIDATADAYHSGATEKAADVS------QKYKIGSKVKARILFTC 420

Query: 1030 SSSTAGRL--LLLLKAISETETSSSKRAKKKSSYD---VGSLVQ-AEITEIKP-----LE 1078
             +S   ++   LL   +S +   S K  ++K   D   + ++V+ A++ ++ P      +
Sbjct: 421  PNSEPRKVGVSLLDHVVSLSTRMSGKPKERKPPIDLLPISTIVESAKVVKVAPAQGAFFD 480

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
            L +K  +GF    HI+ ++DDK +V+      FK+  T  ARII   N  D     +++L
Sbjct: 481  LGIKDVVGF---AHISRLSDDKVDVISEESGQFKLDSTHKARIIG-YNALDG----IFQL 532

Query: 1139 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK-VDNEWALLTISRHLKAQL--FILD 1195
            S++  +L       +      D+  GQ V G V+K + ++     +  HL   +   + +
Sbjct: 533  SLEQKVL------DQPFLRIEDIQAGQVVKGKVHKLIADKTGAAAVLVHLADGITGLVPE 586

Query: 1196 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            +      LQ  +R+F  G  VT  VL     +  ++L L+  +  ++  T   +N  M  
Sbjct: 587  AHLADVRLQHPERKFREGVPVTARVLYTEPARHQIQLTLK--KSLVNSDTKPWTNYEM-- 642

Query: 1256 FIHEGDIVGGRISKILSGV--GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
             + EG    G    IL+ V   G  V+    +   +   E+    ++D    +  GQ VK
Sbjct: 643  -LSEGLTGPG----ILTSVRRNGATVRFYGDVKAWLPAAEMSEAFINDATRHFTNGQVVK 697

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
             +++ +    R        L S  D  +  N+ + + +             L+P+ IV+G
Sbjct: 698  VRIISVDAKERQL------LVSCKDPAAVDNNREAAFNA------------LNPSDIVKG 739

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE---SPEKEFPI-GKLVAGRVLSVEPLS 1429
             V   +     + +   +   + + +L+DG  +   S  K+  I G L    VL+    +
Sbjct: 740  TVLEKSDDSATLDIGNGVKGILRIGHLTDGSAKKDISTMKKIRIGGTLEELVVLTKHGKT 799

Query: 1430 KRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
            +   V+ K S  + A  S++  ++ +L  G+ V G ++ +    +F+ + N  + G+   
Sbjct: 800  RSATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGILPDKIFVELGN-GISGVLFK 858

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            S+L E+ +       R  + +  ++  VD  K    L MK+
Sbjct: 859  SQLPEEMISEPNFGLRKDQSISARVTHVDVGKGFFWLSMKA 899



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 123/286 (43%), Gaps = 33/286 (11%)

Query: 484  SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE-FEIVKPGKK 542
            S   G   +  D+K G ++  +V  +     +VQ    + A   L  +++ +++ KP K 
Sbjct: 1079 STVTGKTMSLQDIKVGYILPARVTKIHEASIVVQINEKLAAPIFLEQLADDYDMAKPNK- 1137

Query: 543  FKVGAELVFRV----LGVKSKRITVTHKKTLV-KSKLAILSSYAEATDRLITH----GWI 593
            FKVG   V RV    + + +K++ ++ + + V  S L +     +   +L  H    G+I
Sbjct: 1138 FKVGD--VLRVCVIDIDIPNKKLGLSARPSRVLSSSLTVRDPEIKDKSQLKVHQVVRGFI 1195

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
              +  +G +VR    V+ +   S L  +   +  S +HV Q+V  +I+S+    R   +S
Sbjct: 1196 KHVASNGVYVRLGPHVEAYVRVSHLSDEYIKDWKSAFHVDQLVTGKIISNKEDQRNPQMS 1255

Query: 654  F--------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705
                       +P   S+   +K+G +V+  V  V    V + V       G      LA
Sbjct: 1256 LKTSVIQGNYTEPLEFSD---LKVGQIVTAKVRHVEDFGVFLVVDNSSNVSGLCHISQLA 1312

Query: 706  DHLEHATVMKSVIKPGYEFD-----QLLVLDNESSNLLLSAKYSLI 746
            D+     V K  IK  Y+ D     +++ ++ +   +  + KYS I
Sbjct: 1313 DN----AVDKDKIKDMYKKDDVVKAKIVKIEPKQRKISFTLKYSQI 1354



 Score = 44.3 bits (103), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 123/320 (38%), Gaps = 45/320 (14%)

Query: 667  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
            +K+G ++   V  +   ++VV +  K      I  E LAD  + A   K   K G +  +
Sbjct: 1091 IKVGYILPARVTKIHEASIVVQINEK--LAAPIFLEQLADDYDMAKPNK--FKVG-DVLR 1145

Query: 727  LLVLDNESSN--LLLSAKYSLINSAQ---QLPS--DASHIHPNSVVHGYVCNIIETGCFV 779
            + V+D +  N  L LSA+ S + S+    + P   D S +  + VV G++ ++   G +V
Sbjct: 1146 VCVIDIDIPNKKLGLSARPSRVLSSSLTVRDPEIKDKSQLKVHQVVRGFIKHVASNGVYV 1205

Query: 780  RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            R    +  +   S   D    D    ++V Q V   I+    +     +SLK S      
Sbjct: 1206 RLGPHVEAYVRVSHLSDEYIKDWKSAFHVDQLVTGKIISNKEDQRNPQMSLKTSVIQG-- 1263

Query: 840  ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                                  N +E        +G ++  KV    DFGV +  +  S+
Sbjct: 1264 ----------------------NYTEPLEFSDLKVGQIVTAKVRHVEDFGVFLVVDNSSN 1301

Query: 900  VYGFITHHQLAGATVE---------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
            V G     QLA   V+            V++A I+ +   +R +  +LK   I    E  
Sbjct: 1302 VSGLCHISQLADNAVDKDKIKDMYKKDDVVKAKIVKIEPKQRKISFTLKYSQIKGDGEDE 1361

Query: 951  SNRQAQKKKRKREASKDLGV 970
                A + +   E+  D G+
Sbjct: 1362 DMEDASEDELAEESDSDGGI 1381


>gi|209877006|ref|XP_002139945.1| S1 RNA binding domain-containing protein [Cryptosporidium muris RN66]
 gi|209555551|gb|EEA05596.1| S1 RNA binding domain-containing protein [Cryptosporidium muris RN66]
          Length = 1948

 Score =  281 bits (719), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 218/733 (29%), Positives = 378/733 (51%), Gaps = 88/733 (12%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG--YDEGQFVKCKV 1316
            EG+ V  ++  +L G  GL+V+     YGR+H TEL +I ++DP+S   Y  G+ +  KV
Sbjct: 1227 EGNNVLCKVVGVLQGYEGLIVKFDEKNYGRIHCTELDDIWINDPISEDRYKVGKKLTVKV 1286

Query: 1317 L-EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK-IEDLSPNMIVQGY 1374
            L ++S+  R       S +       ++N S +  +++T      K I D+    ++ GY
Sbjct: 1287 LGKLSKNKRVLISHTGSKKYVQLIWDASNRSSIIKNIETSSTSRPKSINDIKLGSLINGY 1346

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--FPIGKLVAGRVLSVEPLSK-R 1431
            +K    +G F+ + R L  ++ L  LS+      E    FPIGKL+   +L +  L + +
Sbjct: 1347 IKYSGKQGVFVHIGRNLIGRIKLRELSNKTTTEEEARELFPIGKLL-NPILVIGGLEENK 1405

Query: 1432 VEVTLK--TSD------SRTASQSEINNLS-----------------------NLHVGDI 1460
            ++++L    SD      S+    SE+++L+                       +L++G I
Sbjct: 1406 IDLSLSRLQSDNVILKISQQKDYSELDDLNSHGNGEEQLSNYETNLLGKLRFEDLYIGRI 1465

Query: 1461 VIGQIKRVES-YGLFITIENT--NLVGLCHVSELSEDHVDNIE----TIYRAGEKVKVKI 1513
            + G+IK V + +G+F+T+++T   +  LC ++E   D+ + I     +IY+ G+ V  KI
Sbjct: 1466 LAGKIKHVSTKFGIFVTLKDTIDGINALCPLNESMNDYSNKITQFLPSIYKVGDDVLCKI 1525

Query: 1514 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDM 1573
            +KVD    RI + +K   F+   ++ +  S +  D  +  + + + +  L NS +  ++ 
Sbjct: 1526 IKVDSNSNRIWVSLKEKNFEELLEDSESKSTDNEDNQL--MCANDTTQNLSNSEIISEEY 1583

Query: 1574 DMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEK----- 1628
              ++E     ++ Q              D  Q +M + I  N     E + + E      
Sbjct: 1584 LADNELLHEHIIIQ--------------DGIQNNMQDSIESNVHEYSEDEILKETELHEK 1629

Query: 1629 -NNRHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFML 1686
              NR  K  ++   E EIR+ E +L+E    P++ ++FERL+ S  + S +WIKYM++ L
Sbjct: 1630 PKNRQQKLAKQLAAEHEIRSEELKLIESSMNPQSINDFERLLISHKDVSSLWIKYMSYFL 1689

Query: 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG-----NPPEEAVVK---- 1737
             + ++EKAR +AERAL+ ++  E+ E+ NIW+AY N+E  +G     N  E+ + K    
Sbjct: 1690 ELDELEKARIVAERALRNVSYSEDIERWNIWIAYLNMEIAFGKFNINNSSEKELPKNFES 1749

Query: 1738 VFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1796
            +F+RA +   +PKK+++       R   N  +  +L K +KKF  S KVWL  ++ L K 
Sbjct: 1750 LFERAYRNVGNPKKLYIQCSQSLSRFNYNVWSLLILEKALKKFSKSRKVWLEYIKCLFKN 1809

Query: 1797 Q--QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1854
               Q+    ++ +AL S+ R K I+ I+  A +E ++G  +R R++FE ++SE PKR DL
Sbjct: 1810 NKVQQARDEIIPKALQSIGRIKLIRLITDIARVELESGNFNRARTIFENLISENPKRIDL 1869

Query: 1855 WSIYLDQEIRLG-------DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1907
            WS Y D  I+         D+++IR +F+ AI   L P+KMKFLF ++L +EK  G  E 
Sbjct: 1870 WSQYFDAVIKYFNSSNSEVDINIIRSIFKSAIRNDLKPRKMKFLFSRWLAFEKEYGSLED 1929

Query: 1908 IEYVKQKAMEYVE 1920
             + V++ A EYV+
Sbjct: 1930 QKIVQKYAAEYVQ 1942



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 116 SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEI 175
           + K+P   N I    +  G  L+ ++ EV +K+L + LPGG  GLA   + L+    NE 
Sbjct: 41  TSKIPNIRN-IHRDELVTGTLLFCIIDEVYDKELKLSLPGGHFGLATINNTLEDEASNEK 99

Query: 176 EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 235
             N   LL   F  G +V   ++     + E+  R   ++  L+   K L L    +G V
Sbjct: 100 LRNL--LLDERFKAGDIVIAAIICSSKGRVEVTIRPSIVNAGLTFSSKALGL----KGYV 153

Query: 236 LTAYVKSIEDHGYILHFGLP 255
           ++A + SIED+GY L   +P
Sbjct: 154 ISATIISIEDYGYTLDVSIP 173


>gi|47220309|emb|CAG03343.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2384

 Score =  281 bits (719), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 190/571 (33%), Positives = 310/571 (54%), Gaps = 64/571 (11%)

Query: 1381 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS- 1439
            +G  + L       V +++L+D Y  +P   +   ++V  R   ++ ++ + +++L+ S 
Sbjct: 1845 RGLLVQLPFGSMGSVAVTDLADAYRPNPLNAYRKNQIV--RCFLLQKINGKWQLSLRPSR 1902

Query: 1440 ----DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG----------L 1485
                 ++     EI  +S L  G I+ G +  V   G+FI + ++++ G           
Sbjct: 1903 LNPEKAKPVKDLEILAVSELKEGQIIRGYVTSVGKCGIFIRL-SSSITGRAELQKSTKYF 1961

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS-YFKND--ADNLQMS 1542
            C    +  DH+ N       G  +  KI+ +D E+  +SL + S    K+D   ++L + 
Sbjct: 1962 CSNHSVLCDHLPN-------GTLITSKIISIDSEEELVSLSLLSEDTGKSDILPESLGLP 2014

Query: 1543 SEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLD 1602
                  E        N+  L E+   A       S  G S +  Q+ S  S         
Sbjct: 2015 LRLIGKEKKCNTEKKNKRKLSESEQAA------HSSAGPSRL--QVASGFS--------- 2057

Query: 1603 DEQPDMDNGISQNQGHT---DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-- 1657
                  D G+S  +  T   +   + +E+ N  +KKK + E EQ+ +AAE+ L++++   
Sbjct: 2058 -----WDAGLSSLKPATAMQESESSDEEEQNTSSKKKSRRELEQDKKAAEKALIQREVEL 2112

Query: 1658 ------PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1711
                  P     FERL+ +SPNSS +W++YMA  L    +E+AR++AERAL+TI+ REE 
Sbjct: 2113 MDPSLQPEDAAAFERLLLASPNSSLLWLQYMAHHLQATQIEQARTVAERALKTISFREEQ 2172

Query: 1712 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADEL 1771
            EKLN+WVA  NLEN YG   EE++ KVF+RA Q+C+P  V+  L  +Y ++E+ + A+ L
Sbjct: 2173 EKLNVWVALLNLENMYGT--EESLKKVFERAQQFCEPMPVYQQLADIYTKSEKIREAESL 2230

Query: 1772 LYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830
               M+K+F+    VWL     LL++ Q +   A++QRAL S+P  + +  I++ A LEF+
Sbjct: 2231 YKTMVKRFRQHKVVWLNYGTFLLQRGQSDAANALLQRALKSMPPKESVDMIAKFAQLEFR 2290

Query: 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1890
             G A+RGR+MF+ +L+ YPKRTDLWS+++D  ++ G    +R +F+R I LS+  KK+KF
Sbjct: 2291 YGDAERGRTMFDKVLTSYPKRTDLWSVFIDLMVKHGSQKDVREIFDRVIHLSVSVKKIKF 2350

Query: 1891 LFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
             FK+YLEYEK  G  + I+ VK+KA+E+VES
Sbjct: 2351 FFKRYLEYEKKHGTPQSIQAVKEKAIEFVES 2381



 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 168/568 (29%), Positives = 295/568 (51%), Gaps = 50/568 (8%)

Query: 128 LKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEAN---EDN 181
           L+N+  GM L G V EV + ++ + LP GL+G   +    ++   +L  +++++   E  
Sbjct: 1   LQNVREGMLLLGAVKEVADFEVTVSLPCGLQGYLSIKNICESYTKVLSKQLDSSDIEEIY 60

Query: 182 LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
            LP +F  G ++ C+V +LD  K   G   I LS+   L+ K L+  +++ GMVL+  V 
Sbjct: 61  SLPHLFCPGMVLRCLVAKLDTSKG--GNLSIQLSINPKLVNKALTTSSLKAGMVLSGCVD 118

Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
           S+EDHGYI+  G+     FLPR   A NS  ++K G  +   +  +    +VV LS    
Sbjct: 119 SVEDHGYIVDIGIKGTNAFLPRKERA-NSQEELKVGQYVTSALEEVKNDGRVVRLSVSRL 177

Query: 302 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 361
             S+   +  +G ++  L+PG++V+  ++ + ++G++L FL+ FTG VD  H++    ++
Sbjct: 178 NSSQTCAQSSQGWNLTNLLPGLLVNATIKKVTKHGLILDFLSSFTGQVDFLHMEPEQASS 237

Query: 362 NWKND------------YNQHK-------------KVNARILFVDPTSRAVGLTLNPYLL 396
             + D            ++  K             +V AR+L+V+P++R V L+L  +L+
Sbjct: 238 YKEGDQVKLSLLLLIPVFSDFKLECSMKPCSAPPTQVRARVLYVEPSTRLVALSLRSFLV 297

Query: 397 HNRA-----PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
            +       PP   + G++    K+  V    G +L++P     T A+   + + E + +
Sbjct: 298 QSETRLDLRPPGGDRAGEVVKSCKMTVVHHMSGAVLELPD---KTTAFAHKNHLKEPKEQ 354

Query: 452 KLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
             E +     E SC   RIL F  ++ +    L+ S  +   F + D++ G +V+G V  
Sbjct: 355 LNENRLLAMPEHSC---RILDFSLMDNIHFVTLRKSMIDKPFFRYHDLQAGQIVEGTVSV 411

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHK 566
           + + G +V     VK L P  H+S+  +  P KK+  G ++  RVL V+  SK++ +T K
Sbjct: 412 LLTSGMVVHLSDHVKGLVPRTHLSDIILKNPEKKYTEGMKIKCRVLSVEPESKKLYLTRK 471

Query: 567 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
           K LV+S L +  ++A+A    ++HG+I  I+  GC VRFYN V+G  P SEL  +P   P
Sbjct: 472 KALVESSLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFYNDVKGLVPLSELSSEPISRP 531

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSF 654
             +++VGQV+K +++       ++ LSF
Sbjct: 532 EDVFYVGQVLKTKVLQCDRQKAKMLLSF 559



 Score =  234 bits (598), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 249/988 (25%), Positives = 440/988 (44%), Gaps = 113/988 (11%)

Query: 490  VFTHSDVKPGMVVKGKVIAVDSFG-----AIVQFPGGVKALCPLPHMSEFEIVKPGKKFK 544
            +   S++K G +++G V +V   G      +V     VK L P  H+S+  +  P KK+ 
Sbjct: 1091 ILAVSELKEGQIIRGYVTSVGKCGIFISGMVVHLSDHVKGLVPRTHLSDIILKNPEKKYT 1150

Query: 545  VGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
             G ++  RVL V+  SK++ +T KK LV+S L +  ++A+A    ++HG+I  I+  GC 
Sbjct: 1151 EGMKIKCRVLSVEPESKKLYLTRKKALVESSLPLFRTFADARPGRVSHGYIVCIKDFGCI 1210

Query: 603  VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
            VRFYN V+G  P SEL  +P   P  +++VGQ    R M    A       F  +  +  
Sbjct: 1211 VRFYNDVKGLVPLSELSSEPISRPEDVFYVGQ----RAMEG-AAEEASAPEFDCQVGQKL 1265

Query: 663  EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
            E  ++K     SG+   + P+ +          + T+PT HL+DH+ +  ++   ++ G 
Sbjct: 1266 EAKVLK--KTASGLEVAILPDEI----------RATLPTMHLSDHMSNCPLLWECLQEGD 1313

Query: 723  EFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVR 780
                L+ ++    N+ L+ K ++  S  +  +  D S I   + + G+V NI+  G FV 
Sbjct: 1314 NISNLICINRGQQNIALTKKPTIRWSLDEGVVAKDFSEIKVGTQLFGWVKNIMPYGVFVE 1373

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            F   L G AP+S   D   +D + ++ +GQ+V + + +++ E  R  ++LK S   S   
Sbjct: 1374 FPYGLVGLAPKSAMADRFISDTTASFQLGQTVMAKVTNLDEEKRRFLVTLKISEVISPAG 1433

Query: 841  SFMQE--HFLLEEKIAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
              +    + L E K+          SEL + + G  +G  ++  V+ + D G     ++ 
Sbjct: 1434 DVLTRLVNGLQERKVMTEMLLARGASELHQQLAGLSVGQRLKLTVNTTADNGATFVSDDL 1493

Query: 898  SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
                   T   + G  +  G  + A IL +      V +S+ +            R  +K
Sbjct: 1494 HGATVQATRQHVTGVNLVPGQKVTAVILHIDLLSTHVHVSILS------------RLLEK 1541

Query: 958  KKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN 1017
            +K   E SK         A V+ + +++ V+SL          + S  N       Q L 
Sbjct: 1542 RKPLNEGSK-------YTATVQHISQDFAVISLDNTAQLTVIQTSSHLNHMPLSGTQELK 1594

Query: 1018 -GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS--YDVGSLVQAEITEI 1074
             G S+   V+        G  L+        E SS KR   K+S  Y  G +VQA++  +
Sbjct: 1595 LGMSLTVEVIEASCQEAQGLPLV------SWERSSPKRQPTKTSMGYRFGEIVQAKVKSV 1648

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTVTARII----AKSNK- 1127
            KP+ +++    G  G +H++EV D + +V +     F  K G TVTAR+I    A S++ 
Sbjct: 1649 KPIGIQVTLEDGTAGSVHVSEVIDAR-DVCQGYLPTFSVKAGSTVTARVIGGREASSHRF 1707

Query: 1128 -----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEE--CDVSIGQRVTGYVYKVDNEWAL 1180
                 P+ K + L EL++  S L  S     +  +E      +G+ +T +V K   +  +
Sbjct: 1708 LPFSHPNFKYTIL-ELTLISSKLDKSTELKPVSTKEHLNSYKVGEEITCFVLKFHPDKKV 1766

Query: 1181 LTISRH--LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
            L ++ H  +   + +L    +P      +  F +G+AV   V+  + + +   L L    
Sbjct: 1767 LEVTTHPGVIGTVELLAMITDPKLATHPENVFKMGQAVYAKVVEASTKPQRFTLSL---- 1822

Query: 1239 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
             G+             T + EG +  G +      + GL+VQ+     G V  T+L +  
Sbjct: 1823 TGV-------------TQLEEGAVTLGMVIDS-DPLRGLLVQLPFGSMGSVAVTDLADAY 1868

Query: 1299 VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1358
              +PL+ Y + Q V+C +L+    + G +  +LSLR           S L+ +   P K 
Sbjct: 1869 RPNPLNAYRKNQIVRCFLLQ---KINGKW--QLSLR----------PSRLNPEKAKPVKD 1913

Query: 1359 LE--KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFP 1413
            LE   + +L    I++GYV +V   G FI LS  +  +  L   +  +  +        P
Sbjct: 1914 LEILAVSELKEGQIIRGYVTSVGKCGIFIRLSSSITGRAELQKSTKYFCSNHSVLCDHLP 1973

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
             G L+  +++S++   + V ++L + D+
Sbjct: 1974 NGTLITSKIISIDSEEELVSLSLLSEDT 2001



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 223/926 (24%), Positives = 389/926 (42%), Gaps = 165/926 (17%)

Query: 667  VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
            ++ G +V G V V+  + +VV++    + KG +P  HL+D      ++K+  K   E  +
Sbjct: 399  LQAGQIVEGTVSVLLTSGMVVHL--SDHVKGLVPRTHLSD-----IILKNPEKKYTEGMK 451

Query: 727  L----LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
            +    L ++ ES  L L+ K +L+ S+  L    +   P  V HGY+  I + GC VRF 
Sbjct: 452  IKCRVLSVEPESKKLYLTRKKALVESSLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFY 511

Query: 783  GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--------- 833
              + G  P S+      +     +YVGQ +++ +L  + +  ++ LS K++         
Sbjct: 512  NDVKGLVPLSELSSEPISRPEDVFYVGQVLKTKVLQCDRQKAKMLLSFKRAMEGAAEEAS 571

Query: 834  -----C----------CSSTDASFM---------------QEHFL--------------- 848
                 C           S T ASF                +  FL               
Sbjct: 572  APEFDCQVGQAMADRFISDTTASFQLGQTVMAKVTNLDEEKRRFLVTLKISEVISPAGDV 631

Query: 849  -------LEEKIAMLQSSKHNG-SEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                   L+E+ AM +     G SEL + + G  +G  ++  V+ + D G     ++   
Sbjct: 632  LTRLVNGLQERKAMTEMLLARGASELHQQLAGLSVGQRLKLTVNTTADNGATFVSDDLHG 691

Query: 900  VYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKK 959
                 T   + G  +  G  + A IL +      V +S+ +            R  +K+K
Sbjct: 692  ATVQATRQHVTGVNLVPGQKVTAVILHIDLLSTHVHVSILS------------RLLEKRK 739

Query: 960  RKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLN-G 1018
               E SK         A V+ + +++ V+SL          + S  N       Q L  G
Sbjct: 740  PLNEGSK-------YTATVQHISQDFAVISLDNTAQLTVIQTSSHLNHMPLSGTQELKLG 792

Query: 1019 QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS--YDVGSLVQAEITEIKP 1076
             S+   V+        G  L+        E SS KR   K+S  Y  G +VQA++  +KP
Sbjct: 793  MSLTVEVIEASCQEAQGLPLV------SWERSSPKRQPTKTSMGYRFGEIVQAKVKSVKP 846

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF--KIGQTVTARIIA---KSNKPDMK 1131
            + +++    G  G +H++EV D + +V +     F  K G TVTAR+I     S+   + 
Sbjct: 847  IGIQVTLEDGTAGSVHVSEVIDAR-DVCQGYLPTFSVKAGSTVTARVIGGREASSHSKLD 905

Query: 1132 KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRH--LKA 1189
            KS      +KP + T   + S          +G+ +T +V K   +  +L ++ H  +  
Sbjct: 906  KS----TELKP-VSTKEHLNS--------YKVGEEITCFVLKFHPDKKVLEVTTHPGVIG 952

Query: 1190 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1249
             + +L    +P      +  F +G+AV   V+  + + +   L L     G+        
Sbjct: 953  TVELLAMITDPKLATHPENVFKMGQAVYAKVVEASTKPQRFTLSL----TGV-------- 1000

Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
                 T + EG +  G +      + GL+VQ+     G V  T+L +    +PL+ Y + 
Sbjct: 1001 -----TQLEEGAVTLGMVIDS-DPLRGLLVQLPFGSMGSVAVTDLADAYRPNPLNAYRKN 1054

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE--KIEDLSP 1367
            Q V+C +L+    + G +  +LSLR           S L+ +   P K LE   + +L  
Sbjct: 1055 QIVRCFLLQ---KINGKW--QLSLR----------PSRLNPEKAKPVKDLEILAVSELKE 1099

Query: 1368 NMIVQGYVKNVTSKGCFI-----MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
              I++GYV +V   G FI      LS  +   V  ++LSD  +++PEK++  G  +  RV
Sbjct: 1100 GQIIRGYVTSVGKCGIFISGMVVHLSDHVKGLVPRTHLSDIILKNPEKKYTEGMKIKCRV 1159

Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1482
            LSVEP SK++ +T K +   + S       ++   G +  G I  ++ +G  +   N ++
Sbjct: 1160 LSVEPESKKLYLTRKKALVES-SLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFYN-DV 1217

Query: 1483 VGLCHVSELSEDHVDNIETIYRAGEK 1508
             GL  +SELS + +   E ++  G++
Sbjct: 1218 KGLVPLSELSSEPISRPEDVFYVGQR 1243



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 90/168 (53%), Gaps = 2/168 (1%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
            +  DL    IV+G V  + + G  + LS  +   V  ++LSD  +++PEK++  G  +  
Sbjct: 395  RYHDLQAGQIVEGTVSVLLTSGMVVHLSDHVKGLVPRTHLSDIILKNPEKKYTEGMKIKC 454

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
            RVLSVEP SK++ +T K +   + S       ++   G +  G I  ++ +G  +   N 
Sbjct: 455  RVLSVEPESKKLYLTRKKALVES-SLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFYN- 512

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            ++ GL  +SELS + +   E ++  G+ +K K+L+ D++K ++ L  K
Sbjct: 513  DVKGLVPLSELSSEPISRPEDVFYVGQVLKTKVLQCDRQKAKMLLSFK 560



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 110/499 (22%), Positives = 183/499 (36%), Gaps = 124/499 (24%)

Query: 1111 FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            FK+GQ V A+++              E S KP   T+S  G   L E      G    G 
Sbjct: 973  FKMGQAVYAKVV--------------EASTKPQRFTLSLTGVTQLEE------GAVTLGM 1012

Query: 1171 VYKVDNEWALLT---ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
            V   D    LL            +  L  AY P+ L  + R+  I +        + K  
Sbjct: 1013 VIDSDPLRGLLVQLPFGSMGSVAVTDLADAYRPNPLNAY-RKNQIVRCFL-----LQKIN 1066

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSG---VGGLVVQIG 1282
               +L LRP +    +K   + +  +     + EG I+ G ++ +      + G+VV + 
Sbjct: 1067 GKWQLSLRPSRLN-PEKAKPVKDLEILAVSELKEGQIIRGYVTSVGKCGIFISGMVVHLS 1125

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
             H+ G V  T L +I + +P   Y EG  +KC+VL +    +  +   L+ + +L     
Sbjct: 1126 DHVKGLVPRTHLSDIILKNPEKKYTEGMKIKCRVLSVEPESKKLY---LTRKKAL----- 1177

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS- 1401
                     V++         D  P  +  GY+  +   GC +     +   V LS LS 
Sbjct: 1178 ---------VESSLPLFRTFADARPGRVSHGYIVCIKDFGCIVRFYNDVKGLVPLSELSS 1228

Query: 1402 -----------------DGYVE---SPEKEFPIGKLVAGRVL-------SVEPLSKRVEV 1434
                             +G  E   +PE +  +G+ +  +VL        V  L   +  
Sbjct: 1229 EPISRPEDVFYVGQRAMEGAAEEASAPEFDCQVGQKLEAKVLKKTASGLEVAILPDEIRA 1288

Query: 1435 TLKT---SDSRTASQ------SEINNLSNL------------------------------ 1455
            TL T   SD  +          E +N+SNL                              
Sbjct: 1289 TLPTMHLSDHMSNCPLLWECLQEGDNISNLICINRGQQNIALTKKPTIRWSLDEGVVAKD 1348

Query: 1456 ----HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
                 VG  + G +K +  YG+F+      LVGL   S +++  + +    ++ G+ V  
Sbjct: 1349 FSEIKVGTQLFGWVKNIMPYGVFVEFPY-GLVGLAPKSAMADRFISDTTASFQLGQTVMA 1407

Query: 1512 KILKVDKEKRRISLGMKSS 1530
            K+  +D+EKRR  + +K S
Sbjct: 1408 KVTNLDEEKRRFLVTLKIS 1426


>gi|355709778|gb|AES03704.1| programmed cell death 11 [Mustela putorius furo]
          Length = 686

 Score =  280 bits (716), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 141/290 (48%), Positives = 205/290 (70%), Gaps = 4/290 (1%)

Query: 1637 EKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1695
            EK++ E+E+   EE L++    P + D+F+RL+ SSPNSS +W++YMAF L   ++EKAR
Sbjct: 396  EKQKAEKELSRIEEALMDPGRQPESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKAR 455

Query: 1696 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1755
            ++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L
Sbjct: 456  AVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHL 513

Query: 1756 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPR 1814
              +Y ++E+ + A EL  +M+K+F+    VW++    LL++ Q G    V+QRAL  LP 
Sbjct: 514  ADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPI 573

Query: 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874
             +H+  I++ A LEF+ G A+R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +
Sbjct: 574  KEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDI 633

Query: 1875 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+  A
Sbjct: 634  FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEAKSA 683



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 95/237 (40%), Gaps = 34/237 (14%)

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            ++F IG+A+   V+  +  K  L L L             I    ++    +G++  GR+
Sbjct: 8    KKFRIGQALKATVVGPDSSKAFLCLSL-------------IGPHKLE----KGEVAMGRV 50

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
             K+ +   GL V       GRV    L +     PL  +   + V+C VL  +  V    
Sbjct: 51   VKV-TPKEGLTVSFPFGKIGRVSVFHLSDSYSETPLEDFVPQKVVRCYVLATTGHV---- 105

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
             + LSLRSS      TN    S   D     +  I+D+    +++GYVK+V   G    L
Sbjct: 106  -LTLSLRSS-----RTNPKTKSKITDP---EINSIQDIQEGQLLRGYVKSVQPHGVXXXL 156

Query: 1388 SRK---LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
                  L     +S  S        K  P GKL+  +VLS+      VE++    D+
Sbjct: 157  GPSVVGLARYPYVSQYSPSDKALYHKHLPEGKLLTAKVLSLNREKNLVELSFLPDDT 213



 Score = 47.4 bits (111), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 31/240 (12%)

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 1068
            K P K+F  GQ++ ATV+  P SS A   L L+                    + G +  
Sbjct: 4    KHPDKKFRIGQALKATVVG-PDSSKAFLCLSLIGP---------------HKLEKGEVAM 47

Query: 1069 AEITEIKPLE-LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK 1127
              + ++ P E L + F  G  GR+ +  ++D  S   E    +F   + V   ++A +  
Sbjct: 48   GRVVKVTPKEGLTVSFPFGKIGRVSVFHLSDSYS---ETPLEDFVPQKVVRCYVLATTG- 103

Query: 1128 PDMKKSFLWELSIKPSML---TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1184
                   +  LS++ S     T S+I    +    D+  GQ + GYV  V        + 
Sbjct: 104  ------HVLTLSLRSSRTNPKTKSKITDPEINSIQDIQEGQLLRGYVKSVQPHGVXXXLG 157

Query: 1185 RHLKA-QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
              +     +   S Y PS+   + +    GK +T  VLS+N+EK L+ L   P   G  D
Sbjct: 158  PSVVGLARYPYVSQYSPSDKALYHKHLPEGKLLTAKVLSLNREKNLVELSFLPDDTGKPD 217



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-------VKPGL 278
           S++ +QEG +L  YVKS++ HG     G PS  G      +++ S  D       +  G 
Sbjct: 130 SIQDIQEGQLLRGYVKSVQPHGVXXXLG-PSVVGLARYPYVSQYSPSDKALYHKHLPEGK 188

Query: 279 LLQGVVRSIDRTRKVVYLSSDPDTVSK 305
           LL   V S++R + +V LS  PD   K
Sbjct: 189 LLTAKVLSLNREKNLVELSFLPDDTGK 215


>gi|241730208|ref|XP_002413818.1| programmed cell death protein, putative [Ixodes scapularis]
 gi|215507634|gb|EEC17126.1| programmed cell death protein, putative [Ixodes scapularis]
          Length = 835

 Score =  278 bits (712), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 239/752 (31%), Positives = 371/752 (49%), Gaps = 120/752 (15%)

Query: 1203 LQEFQR----RFHI-GKAVTGH--VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            +Q FQ+    R HI GK    H  +L+I   K L    L P + G               
Sbjct: 163  MQGFQQGDKLRLHILGKTAVQHKRMLAITGRKNLTECSLFPHRGGCE------------- 209

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
             +  G+ V G  S    G   LV+        P L   +   +L  +        Y  GQ
Sbjct: 210  -VRPGNTVTGFFSHFSEGSLFLVLSTDKMAKLPILNMNLPAEDLPYVH-----KLYKIGQ 263

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
             V+ KVL + +       VELS                  D DT          L P   
Sbjct: 264  AVRAKVLRVDKNT-----VELS----------------QLDTDT----------LEPGSK 292

Query: 1371 VQGYVKNV-TSKGCFIMLSRKLDAKVLLSNLSDGYVESPE--KEFPIGKLVAGRVLSVEP 1427
            V   V +V T+ G ++ L       + L+++SD + ++    +     + V  R+L+ + 
Sbjct: 293  VNACVVSVRTTLGAYLCLPLGHRGVMGLTDVSDDFSKTTALMESHLQARYVRCRILTQDE 352

Query: 1428 LSKRVEVTLKTSDSRTASQS-----EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1482
             + +  V+++ S    A  S     E+++ ++L V   + G +K V  +G F+ +   N+
Sbjct: 353  ETGQFRVSMRESRLNMARASAVVDIEVDDFNDLSVDTSLRGFVKSVNKFGCFVNV-GYNI 411

Query: 1483 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA----DN 1538
             GL  +S+L    +     + + G  V V +  +   ++++ L + +S  ++        
Sbjct: 412  DGLVPLSKLP-GAIQRNRKMLKIGSLVSVVVKHIQAAEKKLLLTLSNSEIQSPTAPRKRR 470

Query: 1539 LQMSSEEE----SDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASV 1594
            L  +SE E    S E   ++    R SL E  S  V+                     + 
Sbjct: 471  LSSTSETEPIYDSTEKKSKLDPLPRLSLGEGFSWDVE---------------------AT 509

Query: 1595 PPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE-KEEREQ---EIRAAEE 1650
            P L  +L+D  P +       Q   DEA   +E+ ++H  +KE +EEREQ   ++R  E 
Sbjct: 510  PNLAKHLED-APAV-------QSSDDEA---EEQGSKHKTRKEIQEEREQAEAKLRERER 558

Query: 1651 RLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE 1709
            RL++    P T D+F+RLV  SPNSS VW++YMAF L  A++EKAR++A RAL  I  RE
Sbjct: 559  RLVDPSREPETVDDFDRLVLVSPNSSIVWLRYMAFHLRQAEIEKARTVARRALDCIQFRE 618

Query: 1710 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1769
            E EKLN+W A  NLE+ YG   ++++ +VF++ALQ  D  KV+  L  +Y    +N+LA+
Sbjct: 619  EQEKLNVWTALLNLEHLYGT--QDSLNEVFRQALQCNDALKVYTHLAQIYVSANKNELAE 676

Query: 1770 ELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILE 1828
            EL  +M+ KFK +  VWL      +K    E  ++++QRAL SLP+  H+  IS+ A +E
Sbjct: 677  ELYKQMLNKFKQNVDVWLGFGLFYIKSGNVESCRSLLQRALKSLPKQDHVAIISKFAQME 736

Query: 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888
            FK G  +RG+SMF+ IL+ YPKRTDLW +Y+D   +L DV+ +R   ERA SL+L PKKM
Sbjct: 737  FKYGDVERGKSMFDSILANYPKRTDLWLVYVDLLAKLPDVEGVRKTLERATSLNLNPKKM 796

Query: 1889 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            K LFKK+L++EK  G++   + V+Q+A+EYVE
Sbjct: 797  KPLFKKWLDFEKQHGDDTTSQKVRQRAVEYVE 828



 Score = 70.9 bits (172), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 171/397 (43%), Gaps = 60/397 (15%)

Query: 1070 EITE-IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP 1128
            EI E ++  +L++    G  GR+HIT + +      EN    F+ G  +   I+ K+   
Sbjct: 125  EIVESVEKFQLKVSLKGGSRGRVHITMIKEQPKEG-ENPMQGFQQGDKLRLHILGKTA-- 181

Query: 1129 DMKKSFLWELSIKPSMLTVSEIGSKLLFEE---CDVSIGQRVTGYVYKVDNEWALLTISR 1185
             ++   +  ++ + ++   S      LF     C+V  G  VTG+          L +S 
Sbjct: 182  -VQHKRMLAITGRKNLTECS------LFPHRGGCEVRPGNTVTGFFSHFSEGSLFLVLST 234

Query: 1186 HLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1245
               A+L IL+      +L    + + IG+AV   VL ++K                   T
Sbjct: 235  DKMAKLPILNMNLPAEDLPYVHKLYKIGQAVRAKVLRVDK------------------NT 276

Query: 1246 VDISNDNMQTFIHEGDIVGGRISKILSGVGG-LVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            V++S  +  T +  G  V   +  + + +G  L + +G    G +  T+     VSD  S
Sbjct: 277  VELSQLDTDT-LEPGSKVNACVVSVRTTLGAYLCLPLGHR--GVMGLTD-----VSDDFS 328

Query: 1305 -------GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1357
                    + + ++V+C++L       G F V  S+R S   M+   S+ +  +VD    
Sbjct: 329  KTTALMESHLQARYVRCRILTQDEET-GQFRV--SMRESRLNMARA-SAVVDIEVD---- 380

Query: 1358 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1417
                  DLS +  ++G+VK+V   GCF+ +   +D  V LS L  G ++   K   IG L
Sbjct: 381  ---DFNDLSVDTSLRGFVKSVNKFGCFVNVGYNIDGLVPLSKLP-GAIQRNRKMLKIGSL 436

Query: 1418 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V+  V  ++   K++ +TL  S+ ++ +      LS+
Sbjct: 437  VSVVVKHIQAAEKKLLLTLSNSEIQSPTAPRKRRLSS 473



 Score = 43.9 bits (102), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 140/350 (40%), Gaps = 26/350 (7%)

Query: 506 VIAVDSFGAIVQFPGGVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVLG---VKSKR 560
           V +V+ F   V   GG +    +  + E   E   P + F+ G +L   +LG   V+ KR
Sbjct: 127 VESVEKFQLKVSLKGGSRGRVHITMIKEQPKEGENPMQGFQQGDKLRLHILGKTAVQHKR 186

Query: 561 -ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
            + +T +K L +  L       E        G+ +   +   F+          P   + 
Sbjct: 187 MLAITGRKNLTECSLFPHRGGCEVRPGNTVTGFFSHFSEGSLFLVLSTDKMAKLPILNMN 246

Query: 620 LDPGCEP--SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVV 677
           L     P    +Y +GQ V+ +++     +  + LS +       + D ++ GS V+  V
Sbjct: 247 LPAEDLPYVHKLYKIGQAVRAKVLRVDKNT--VELSQL-------DTDTLEPGSKVNACV 297

Query: 678 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLDNESSN 736
             V         +  G+ +G +    ++D     T +M+S ++  Y   ++L  D E+  
Sbjct: 298 VSVRTTLGAYLCLPLGH-RGVMGLTDVSDDFSKTTALMESHLQARYVRCRILTQDEETGQ 356

Query: 737 LLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
             +S + S +N A+          D + +  ++ + G+V ++ + GCFV     + G  P
Sbjct: 357 FRVSMRESRLNMARASAVVDIEVDDFNDLSVDTSLRGFVKSVNKFGCFVNVGYNIDGLVP 416

Query: 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            SK + G      K   +G  V   +  + +   ++ L+L  S   S  A
Sbjct: 417 LSK-LPGAIQRNRKMLKIGSLVSVVVKHIQAAEKKLLLTLSNSEIQSPTA 465


>gi|156348528|ref|XP_001621882.1| hypothetical protein NEMVEDRAFT_v1g143331 [Nematostella vectensis]
 gi|156208205|gb|EDO29782.1| predicted protein [Nematostella vectensis]
          Length = 274

 Score =  276 bits (707), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 132/269 (49%), Positives = 193/269 (71%), Gaps = 3/269 (1%)

Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1716
             P   ++F+RLV SSPN+S  W++YMAF L   +++KAR++AERAL+TI+ REE EKLNI
Sbjct: 6    TPECAEDFDRLVLSSPNNSVTWLQYMAFHLHTTEIDKARAVAERALRTISFREEREKLNI 65

Query: 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
            WVA  NLEN YG   +E+++KVF+RALQ+ +PKKV   L+ +Y ++E+ +LA++L + M 
Sbjct: 66   WVALMNLENLYGT--QESLIKVFERALQHNEPKKVFFHLITIYTQSEKTELAEKLFHTMT 123

Query: 1777 KKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835
            K+F  S  VW+   +  +K  + +  + ++QR L SLP  KH++ I Q A++EFKNG   
Sbjct: 124  KRFSQSKTVWIEFGRFFMKTGKPDSARKLLQRGLKSLPTRKHVETIVQFALMEFKNGDPQ 183

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            RG+++ E +LS YPKRTD+WS+Y+D   + G  D +R +FER I ++L  +KMKFLFKKY
Sbjct: 184  RGQTVLESVLSNYPKRTDIWSVYIDMMSKQGHPDTVRQIFERVIHMNLSSRKMKFLFKKY 243

Query: 1896 LEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            L++E+  G+E  +E VK KAMEYVES +A
Sbjct: 244  LDFEREHGDEMSVEAVKTKAMEYVESKVA 272


>gi|141795595|gb|AAI39595.1| Pdcd11 protein [Danio rerio]
          Length = 932

 Score =  275 bits (704), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 240/919 (26%), Positives = 459/919 (49%), Gaps = 61/919 (6%)

Query: 54  FPRGGGHSLTQRER--DEIHAEVDAEFEA-VERGLHKKNKKKKKKTERKANETVDDLGSL 110
           FPRGG    T+R++  D I  EVD  F+   +    KK   K+ +  +   + VD+    
Sbjct: 5   FPRGG----TERKKPTDLIPHEVDNLFDTPAKAVKKKKKAVKQDEAPKPKKQKVDE---- 56

Query: 111 FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADAL 167
             + I          + L++++ G  + G V EV++ ++V+ LP GL G   +    DA 
Sbjct: 57  --ENIKLNTTTTVQILHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAY 114

Query: 168 DPILDNEIEANE--DNLLP--TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK 223
             IL+++++ ++  + ++P   +F  G L+ C+V  LD  K+  G   + LS+    + K
Sbjct: 115 TNILNDKLDTDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKE--GHISLKLSINPKDVNK 172

Query: 224 GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 283
            L+   ++  M L+  V+S+EDHGY++  G+     FLP+   + +S  D+  G  +  +
Sbjct: 173 ALNSVALKPAMTLSGCVESVEDHGYLVDIGIGGSKAFLPKK--STSSKQDLYVGQYVLVL 230

Query: 284 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
           +  +  + +VV LS +P  + K   +  +G ++D L+PG++V   V+ +  +G++++FL+
Sbjct: 231 IEDVKDSGRVVRLSQNPQALVKACAETKQGWTLDNLLPGLLVHGCVKRVTPHGLIVTFLS 290

Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS 403
            FTG VD  HL     +T     Y++ +++ ARIL+V P++R VGL+L  +LL    PP 
Sbjct: 291 SFTGVVDFLHLDEDKEST-----YSKGQEILARILYVQPSTRQVGLSLRSHLL----PPG 341

Query: 404 HV--------KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
                     +VG++    ++  +    G L+ +      + A+V   ++ +E   +L+ 
Sbjct: 342 GAVLDLHFSERVGEVVQGCQMTSLHHYSGALMKMLD---GSRAFVH-RNLLKEPKEELDT 397

Query: 456 KYKEGSCVRV-RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
            +       + RI+ +  +E +    L+ S+ E   F+  D+K G +V+G VI +   G 
Sbjct: 398 NHLMSQSQHILRIINYSPIEQIYQATLRWSSIETPFFSCQDIKVGQIVEGTVIDLQKHGV 457

Query: 515 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS 572
            V+    ++ + P  H+++  +  P KKF  G ++  RVL V++++  + +T KK LV+S
Sbjct: 458 YVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLSVEAQKKLLILTRKKALVES 517

Query: 573 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
            L I  SY++A    I+HG++  I++ GC VRFY  V+G  P  EL  +    P  ++ V
Sbjct: 518 TLPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFV 577

Query: 633 GQVVKCRIMSSIPASRRINLSFM-MKPTRVSEDDLVKLGSLVSGVVDVVTP----NAVVV 687
           GQVVK +++      + + LSF  +    V E+ + K   +V  +VD        N + V
Sbjct: 578 GQVVKVKVLKCDEEKKMLRLSFKSVTEEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEV 637

Query: 688 YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN-ESSNLLLSAKYSLI 746
            +I +   +  +PT HL+DH+ +   +   ++ G     L+ L N +   ++L+ K  L 
Sbjct: 638 SIIPEEV-QAFLPTTHLSDHVTNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLK 696

Query: 747 NSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
              +   +P + S +     + G+V NI+  G F+ F   + G AP +   D    + S 
Sbjct: 697 AYIEDGAIPKNFSELQVGMQMVGWVKNIMPYGVFISFPYGVFGLAPIANMGDQFIKETSG 756

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL-LEEK--IAMLQSSKH 861
            + + Q+V + + +++ E  R  +SLK S  S ++  F       L+E+  I+ +++ + 
Sbjct: 757 IFDIDQTVVAKVTNLDEEKQRFLVSLKLSELSLSENEFHTRLIQGLKERRNISEMRAGRG 816

Query: 862 NGSELKWVEGFIIGSVIEGKVHESNDFG-VVVSFEEHSDVYGFITHHQLAGATVESGSVI 920
           +   L  +    +G  ++  V ++ + G V+++ ++ S V    + +   G  +  G  +
Sbjct: 817 DSDVLWKLSALTVGDQMKMIVGDTTEDGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKL 876

Query: 921 QAAILDVAKAERLVDLSLK 939
            A IL +   +  V +SL+
Sbjct: 877 NAVILHIDFVKSQVHVSLR 895



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 2/167 (1%)

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
            +D+    IV+G V ++   G ++ +   +   +   +L+D  +++PEK+F  G  V  RV
Sbjct: 437  QDIKVGQIVEGTVIDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRV 496

Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1482
            LSVE   K + +T K +    ++     + S+   G I  G +  ++ +G  +     ++
Sbjct: 497  LSVEAQKKLLILTRKKALVE-STLPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYE-DV 554

Query: 1483 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
             GL  + EL+ + V N E ++  G+ VKVK+LK D+EK+ + L  KS
Sbjct: 555  KGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEKKMLRLSFKS 601



 Score = 60.5 bits (145), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 109/502 (21%), Positives = 204/502 (40%), Gaps = 67/502 (13%)

Query: 1018 GQSVIATVMALPSSSTAGRL----LLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
            GQ V+  +  +  S    RL      L+KA +ET     K+     +   G LV   +  
Sbjct: 224  GQYVLVLIEDVKDSGRVVRLSQNPQALVKACAET-----KQGWTLDNLLPGLLVHGCVKR 278

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            + P  L + F   F G +    +++DK        S +  GQ + ARI+    +P  ++ 
Sbjct: 279  VTPHGLIVTFLSSFTGVVDFLHLDEDKE-------STYSKGQEILARILYV--QPSTRQV 329

Query: 1134 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
                LS++  +L        L F E    +G+ V G          + ++  +  A + +
Sbjct: 330  ---GLSLRSHLLPPGGAVLDLHFSE---RVGEVVQG--------CQMTSLHHYSGALMKM 375

Query: 1194 LDSA---YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1250
            LD +      + L+E +         T H++S  + + +LR++     + I   T+  S+
Sbjct: 376  LDGSRAFVHRNLLKEPKEELD-----TNHLMS--QSQHILRIINYSPIEQIYQATLRWSS 428

Query: 1251 DNMQTF----IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
                 F    I  G IV G +  +     G+ V+IG H+ G +    L ++ + +P   +
Sbjct: 429  IETPFFSCQDIKVGQIVEGTVIDLQKH--GVYVRIGEHIRGMIPRIHLADVTLKNPEKKF 486

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
              G  VKC+VL +    +      L+ + +L              V++     +   D  
Sbjct: 487  YPGLKVKCRVLSVEAQKKLLI---LTRKKAL--------------VESTLPIFQSYSDAR 529

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
            P  I  G+V  +   GC +     +   V +  L+   V +PE+ F +G++V  +VL  +
Sbjct: 530  PGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCD 589

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1486
               K + ++ K+       + +I    +  VG +V  ++ R    GL ++I    +    
Sbjct: 590  EEKKMLRLSFKSVTEEDVREEQIAKF-DFIVGKMVDARVCRKVLNGLEVSIIPEEVQAFL 648

Query: 1487 HVSELSEDHVDNIETIYRAGEK 1508
              + LS DHV N   ++ A E+
Sbjct: 649  PTTHLS-DHVTNCLPLWMALEE 669



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 151/374 (40%), Gaps = 36/374 (9%)

Query: 1156 FEEC-DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
            F  C D+ +GQ V G V  +      + I  H++  +  +  A     L+  +++F+ G 
Sbjct: 433  FFSCQDIKVGQIVEGTVIDLQKHGVYVRIGEHIRGMIPRIHLA--DVTLKNPEKKFYPGL 490

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK---IL 1271
             V   VLS+  +KKLL L  +     + + T+ I       F    D   GRIS    + 
Sbjct: 491  KVKCRVLSVEAQKKLLILTRK---KALVESTLPI-------FQSYSDARPGRISHGFVVC 540

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
                G +V+    + G V   EL    V++P   +  GQ VK KVL+     +    + L
Sbjct: 541  IKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEKK---MLRL 597

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
            S +S              T+ D   + + K + +   M+     + V +     ++  ++
Sbjct: 598  SFKSV-------------TEEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEVSIIPEEV 644

Query: 1392 DAKVLLSNLSDGYVESPEKEFPI--GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
             A +  ++LSD           +  G  +   +       K + +T K           I
Sbjct: 645  QAFLPTTHLSDHVTNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLKAYIEDGAI 704

Query: 1450 -NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1508
              N S L VG  ++G +K +  YG+FI+     + GL  ++ + +  +     I+   + 
Sbjct: 705  PKNFSELQVGMQMVGWVKNIMPYGVFISFP-YGVFGLAPIANMGDQFIKETSGIFDIDQT 763

Query: 1509 VKVKILKVDKEKRR 1522
            V  K+  +D+EK+R
Sbjct: 764  VVAKVTNLDEEKQR 777



 Score = 43.9 bits (102), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 107/261 (40%), Gaps = 45/261 (17%)

Query: 1302 PLSG-YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1360
            PLS  +  G  ++C V  +     G  H+ L L        S N  D++  +++      
Sbjct: 133  PLSKLFTPGMLIRCVVSSLDSAKEG--HISLKL--------SINPKDVNKALNSVA---- 178

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV-- 1418
                L P M + G V++V   G  + +     +K  L   S     S +++  +G+ V  
Sbjct: 179  ----LKPAMTLSGCVESVEDHGYLVDIGIG-GSKAFLPKKS----TSSKQDLYVGQYVLV 229

Query: 1419 -------AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1471
                   +GRV+    LS+  +  +K      A   +   L NL  G +V G +KRV  +
Sbjct: 230  LIEDVKDSGRVVR---LSQNPQALVKAC----AETKQGWTLDNLLPGLLVHGCVKRVTPH 282

Query: 1472 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1531
            GL +T   ++  G+     L ED     E+ Y  G+++  +IL V    R++ L ++S  
Sbjct: 283  GLIVTFL-SSFTGVVDFLHLDEDK----ESTYSKGQEILARILYVQPSTRQVGLSLRSHL 337

Query: 1532 FKNDADNLQMSSEEESDEAIE 1552
                   L +   E   E ++
Sbjct: 338  LPPGGAVLDLHFSERVGEVVQ 358


>gi|154309384|ref|XP_001554026.1| hypothetical protein BC1G_07586 [Botryotinia fuckeliana B05.10]
          Length = 1678

 Score =  275 bits (704), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 328/1298 (25%), Positives = 579/1298 (44%), Gaps = 151/1298 (11%)

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS------EFEIVKPGKKFKVGAELVF 551
            PG  V+  ++ V S G   +  G V     L H        E E     KKFK+GA++  
Sbjct: 360  PGTAVETLIVDVSSRGLTGKVMGMVDVTADLMHSGTSVMNQELE-----KKFKIGAKVRG 414

Query: 552  RVLGV----KSKRITVT---HKKTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKH 599
            RV+        +++ ++   H  +L + +     +     D L     +    I K+E  
Sbjct: 415  RVICTFPNSDPQKLGISLLDHVTSLTQQQAGKPGNKVNPLDTLPLSTIVEEVTIKKVESG 474

Query: 600  -GCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIM--SSIPASRRINL 652
             G FV     G+ GF   S +    ++   E +  Y VG V + R++  +S+     I+L
Sbjct: 475  VGLFVDVGIKGIPGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVLGYNSLDGVYLISL 534

Query: 653  --SFMMKPTRVSEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD 706
              S + +P    ED  +K+G +V G V+  +V    V  ++  +A+  S G +P  HLAD
Sbjct: 535  EKSVLEQPYLRIED--LKIGEVVKGKVEKLIVNDKGVGGLLVNLAENIS-GLVPETHLAD 591

Query: 707  -HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 764
              L H    +   K G     ++L  D     + L+ K +L+NS          I     
Sbjct: 592  IQLLHP---EKKFKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSESPALVSYDDITVGMQ 648

Query: 765  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
              G + NI+ TG  V+F G + GF P S+  +    D ++ + +GQ V  ++L V+ E  
Sbjct: 649  SPGTIVNILNTGAVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIGQVVNVHVLKVDPEAK 708

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
            ++T+S K             ++  + E ++ L   K N      ++G  + +++      
Sbjct: 709  KLTVSCKDPSVFGLAQQNALKNLKIGEIVSALVIEKSNDDISVEIQGLGLKAILP----- 763

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFI 943
                G +    E+     F          +  G V+   A+LD  + +RL+ L+ K   +
Sbjct: 764  ---VGHLTDGSENKSRSSF--------KNIRVGQVLSDLAVLDKLEPKRLIVLTNKPALV 812

Query: 944  DRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS-------------L 990
                     + AQ K   R    D+   +TV+  V+ +    + +              +
Sbjct: 813  ---------KAAQNKTLLR-MFDDVKEKKTVHGFVKNITLTAVFVQFGGGLTGLLPKNKI 862

Query: 991  PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 1050
            PE N  +       Y T +       +GQ      MA  +S       L   A  E    
Sbjct: 863  PEKNLRLPDFGFKKYQTIEVKVLTIDHGQRRFLLSMADATSDKKSNEPLAPGANQEAVNP 922

Query: 1051 SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVV--ENLF 1108
              +  K      +G L +A ++ +K  ++ ++      GRI +++  D  S++   +   
Sbjct: 923  IDETIKSIEDITLGRLTKARVSSVKDTQVNVQLADNIQGRIDVSQAFDSWSDIKSKKQPL 982

Query: 1109 SNFKIGQTVTARIIAKSNKPDMK---------KSFLWELSIKPSMLTVSEIGSKLLFEEC 1159
              F   Q V  R++   +  + +         K+ ++ELS KPS  T S      L +  
Sbjct: 983  KTFSPKQIVDVRVLGIHDARNHRFLPISHRSGKTLVFELSAKPSDQTESAQDPVSLDK-- 1040

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
             + +G     +V  V  +   + IS +++ ++  LD + + S L++    F IG A+  H
Sbjct: 1041 -IKVGSSWLAFVNNVGVDCLWVNISPNVRGRISALDVSDDVSLLKDLAANFPIGSAIRVH 1099

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGL 1277
            V  ++ E   L L  R  QD               TF  + +G IV G+++++      +
Sbjct: 1100 VKGVDVETNRLDLSARSSQDS-----------EALTFDKLSQGMIVPGKVTRV--NERQV 1146

Query: 1278 VVQIGPHLYGRVHFTEL-KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            +VQ+   +   ++ T+L  +   +DP S Y +   V+  V +I    +    V LS R+S
Sbjct: 1147 MVQLTDSISAPINLTDLCDDYSEADP-SKYSKNDIVRVCVTDIDVPNK---RVRLSTRAS 1202

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
                SS    D           +  I  L  N IV+G+VK+V  KG F+ L   + A V 
Sbjct: 1203 RVMNSSAAVQD---------PEISSISQLKVNDIVRGFVKHVADKGLFVNLGGNVTAYVR 1253

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSN 1454
            +S+LSD Y++  + EF + +LV G+V  V+ +   V+++LK S  D    +    N++  
Sbjct: 1254 ISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLSLKPSVIDKDYVAPLTFNDI-- 1311

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
              V  +V G+I++VE +G+FI ++ + N+ GLCH SE++E  V +++ +Y  G+ VK  +
Sbjct: 1312 -QVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAEKRVHDVKKLYSEGDAVKAIV 1370

Query: 1514 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVA---- 1569
            LK+D EK+RIS  MK+S+F+ D +     S+++  + ++           ++        
Sbjct: 1371 LKMDTEKKRISFSMKASHFE-DGNESDDESDDDGVDGVKLDSMDIDDDDDDDDDSEGGID 1429

Query: 1570 ---VQDMDMESEDGGSLVLAQIE---SRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1623
               VQD++  +EDG     +  E   +   VP L     D   D+   + Q  G ++   
Sbjct: 1430 LDDVQDLESAAEDGDEASDSDEEMPDAEGDVPALSAGGFDWSADL---LDQADGQSN--- 1483

Query: 1624 TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMA 1683
             +D  +    +K +K++R+ EI+      L+ + P++  +FERL+   P+SS +W +YMA
Sbjct: 1484 -VDSDDEGTEEKPKKKKRKAEIKVDRTGDLDANGPQSISDFERLLLGQPDSSSLWTQYMA 1542

Query: 1684 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1721
            F + ++++ KAR IAERA++TIN+REE EKLNIW+A  
Sbjct: 1543 FQMQLSELGKAREIAERAIKTINMREETEKLNIWLALL 1580



 Score =  209 bits (533), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 213/804 (26%), Positives = 353/804 (43%), Gaps = 71/804 (8%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG   LT  E  +I  ++DA  + +      K+ K   + +  A+ T     S    
Sbjct: 65  FPRGGASVLTPLEHKQI--QIDATRDVLFEQYGAKSSKPDGEDQEGADATKVKKKSKGKG 122

Query: 114 GI-----SGKLPRYANKI---TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
                    ++     KI   + K + +G  + G V+++N  D+ + LP  L G      
Sbjct: 123 KSKKAAHDSEVEEETVKIEGLSYKRLVSGSLVLGQVSQINATDIALSLPNNLTGYVPITA 182

Query: 166 ALDPILDNEIEANEDNL-------------LPTIFHVGQLVSCIVLQLDDDKKEI----G 208
             D + +                       L  +F +GQ +   V+   DD        G
Sbjct: 183 ISDKVTERVEAIAAAEEDDADDEVEVEDIDLKKMFSLGQYLRAYVVSTSDDTNTATLGKG 242

Query: 209 KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRNNL 266
           KR+I LSLR      G++ + +     L A V S+EDHG I++ GL      GF+   ++
Sbjct: 243 KRRIELSLRPQHANNGVTPQNLINNTTLMASVTSVEDHGLIMNIGLEDTGIRGFMGAKDI 302

Query: 267 A-ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGM 323
             E    DV+ G +   +V  +    K V L +D   +      +      ++D  +PG 
Sbjct: 303 GYEVVLADVQEGAVFLCMVTGLSSNGKTVKLCADTQKIGNVKKSNYLTDAPTVDAFLPGT 362

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT 383
            V T +  +   G+    +     T D+ H   +      +  +    KV  R++   P 
Sbjct: 363 AVETLIVDVSSRGLTGKVMGMVDVTADLMHSGTSVMNQELEKKFKIGAKVRGRVICTFPN 422

Query: 384 S--RAVGLTLNPY---LLHNRA--------PPSHVKVGDIYDQSKVVRVDRGLGLLLDIP 430
           S  + +G++L  +   L   +A        P   + +  I ++  + +V+ G+GL +D+ 
Sbjct: 423 SDPQKLGISLLDHVTSLTQQQAGKPGNKVNPLDTLPLSTIVEEVTIKKVESGVGLFVDVG 482

Query: 431 STPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFE 487
              +  P +V IS V + ++  LE+    YK GS  R R+LG+  L+G+    L+ S  E
Sbjct: 483 IKGI--PGFVHISRVKDGKIETLEETTGPYKVGSVHRGRVLGYNSLDGVYLISLEKSVLE 540

Query: 488 GLVFTHSDVKPGMVVKGKV---IAVDS--FGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
                  D+K G VVKGKV   I  D    G +V     +  L P  H+++ +++ P KK
Sbjct: 541 QPYLRIEDLKIGEVVKGKVEKLIVNDKGVGGLLVNLAENISGLVPETHLADIQLLHPEKK 600

Query: 543 FKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           FK G  +  RVL      ++I +T KKTLV S+   L SY + T  + + G I  I   G
Sbjct: 601 FKEGMAVTARVLSTDPGKRQIRLTLKKTLVNSESPALVSYDDITVGMQSPGTIVNILNTG 660

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------F 654
             V+FY  V+GF P SE+      +P+  + +GQVV   ++   P ++++ +S      F
Sbjct: 661 AVVQFYGNVRGFLPVSEMSEAYIQDPNQHFKIGQVVNVHVLKVDPEAKKLTVSCKDPSVF 720

Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
            +      ++  +K+G +VS +V   + + + V +   G  K  +P  HL D  E+ +  
Sbjct: 721 GLAQQNALKN--LKIGEIVSALVIEKSNDDISVEIQGLGL-KAILPVGHLTDGSENKSRS 777

Query: 715 K-SVIKPGYEFDQLLVLDN-ESSNLL-LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
               I+ G     L VLD  E   L+ L+ K +L+ +AQ   L      +     VHG+V
Sbjct: 778 SFKNIRVGQVLSDLAVLDKLEPKRLIVLTNKPALVKAAQNKTLLRMFDDVKEKKTVHGFV 837

Query: 770 CNIIETGCFVRFLGRLTGFAPRSK 793
            NI  T  FV+F G LTG  P++K
Sbjct: 838 KNITLTAVFVQFGGGLTGLLPKNK 861



 Score = 45.1 bits (105), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 128/601 (21%), Positives = 239/601 (39%), Gaps = 81/601 (13%)

Query: 123  ANKITLKNISAGMKLWGVVAEVNEKDLVICLPG-GLRGLARAADALDPILDNEIEANEDN 181
            A +  LKN+  G  +  +V E +  D+ + + G GL+ +       D   +N+  ++  N
Sbjct: 723  AQQNALKNLKIGEIVSALVIEKSNDDISVEIQGLGLKAILPVGHLTDGS-ENKSRSSFKN 781

Query: 182  LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS------LETVQEGMV 235
            +      VGQ++S + +    DK E  KR I L+ + +L+    +       + V+E   
Sbjct: 782  I-----RVGQVLSDLAVL---DKLE-PKRLIVLTNKPALVKAAQNKTLLRMFDDVKEKKT 832

Query: 236  LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS----GIDVKPGLLLQGVVRSIDRTR 291
            +  +VK+I      + FG    TG LP+N + E +        K    ++  V +ID  +
Sbjct: 833  VHGFVKNITLTAVFVQFG-GGLTGLLPKNKIPEKNLRLPDFGFKKYQTIEVKVLTIDHGQ 891

Query: 292  KVVYLSSDPDTVSKCVTKDLKG--------------ISIDLLVPGMMVSTRVQSILENGV 337
            +   LS    T  K   + L                 SI+ +  G +   RV S+ +  V
Sbjct: 892  RRFLLSMADATSDKKSNEPLAPGANQEAVNPIDETIKSIEDITLGRLTKARVSSVKDTQV 951

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKND----YNQHKKVNARILFVD--------PTSR 385
             +       G +D+    +++     K      ++  + V+ R+L +         P S 
Sbjct: 952  NVQLADNIQGRIDVSQAFDSWSDIKSKKQPLKTFSPKQIVDVRVLGIHDARNHRFLPISH 1011

Query: 386  AVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS-- 443
              G TL   +    A PS  +     D   + ++  G   L  + +  V    +V IS  
Sbjct: 1012 RSGKTL---VFELSAKPSD-QTESAQDPVSLDKIKVGSSWLAFVNNVGVDC-LWVNISPN 1066

Query: 444  --------DVAEEE--VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
                    DV+++   ++ L   +  GS +RV + G   +E     +   S+ +    T 
Sbjct: 1067 VRGRISALDVSDDVSLLKDLAANFPIGSAIRVHVKGV-DVETNRLDLSARSSQDSEALTF 1125

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVKPGKKFKVGAELVFR 552
              +  GM+V GKV  V+    +VQ    + A   L  +  ++    P K  K     + R
Sbjct: 1126 DKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEADPSKYSK---NDIVR 1182

Query: 553  V----LGVKSKRITVTHKKTLVKSKLAI-----LSSYAEATDRLITHGWITKIEKHGCFV 603
            V    + V +KR+ ++ + + V +  A      +SS ++     I  G++  +   G FV
Sbjct: 1183 VCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHVADKGLFV 1242

Query: 604  RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
                 V  +   S+L      +  S + V Q+VK ++         + LS  +KP+ + +
Sbjct: 1243 NLGGNVTAYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQLS--LKPSVIDK 1300

Query: 664  D 664
            D
Sbjct: 1301 D 1301



 Score = 44.3 bits (103), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 22/277 (7%)

Query: 308  TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 367
            ++D + ++ D L  GM+V  +V  + E  VM+      +  +++  L + +   +  + Y
Sbjct: 1117 SQDSEALTFDKLSQGMIVPGKVTRVNERQVMVQLTDSISAPINLTDLCDDYSEAD-PSKY 1175

Query: 368  NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP---------SHVKVGDIYDQSKVVR 418
            +++  V   +  +D  ++ V L+     + N +           S +KV DI        
Sbjct: 1176 SKNDIVRVCVTDIDVPNKRVRLSTRASRVMNSSAAVQDPEISSISQLKVNDIVRGFVKHV 1235

Query: 419  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLAT 478
             D+GL + L    T     AYV ISD+++  ++  + +++    V+ ++     +     
Sbjct: 1236 ADKGLFVNLGGNVT-----AYVRISDLSDSYIKDWKSEFQVDQLVKGKVTVVDEVLNHVQ 1290

Query: 479  GILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSE 533
              LK S  +       T +D++   VV GK+  V+ FG  +   G   V  LC    M+E
Sbjct: 1291 LSLKPSVIDKDYVAPLTFNDIQVNQVVTGKIRKVEDFGVFIVVDGSANVSGLCHQSEMAE 1350

Query: 534  FEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 568
              +    K +  G  +   VL + +  KRI+ + K +
Sbjct: 1351 KRVHDVKKLYSEGDAVKAIVLKMDTEKKRISFSMKAS 1387


>gi|114325445|gb|AAH55276.3| Pdcd11 protein [Mus musculus]
          Length = 297

 Score =  275 bits (704), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 140/287 (48%), Positives = 201/287 (70%), Gaps = 4/287 (1%)

Query: 1637 EKEEREQEIRAAEERLLEK-DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1695
            EK++ E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR
Sbjct: 6    EKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKAR 65

Query: 1696 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1755
            ++AERAL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L
Sbjct: 66   AVAERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHL 123

Query: 1756 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPR 1814
              +Y ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP 
Sbjct: 124  ADIYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPA 183

Query: 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874
             +H+  I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +
Sbjct: 184  KEHVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDI 243

Query: 1875 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            FER I LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 244  FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 290


>gi|449675704|ref|XP_002155874.2| PREDICTED: protein RRP5 homolog [Hydra magnipapillata]
          Length = 824

 Score =  275 bits (702), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 184/577 (31%), Positives = 312/577 (54%), Gaps = 29/577 (5%)

Query: 1363 EDL--SPNMIVQGYVKNV-TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
            EDL  +  +++ G +  V  + G  I LS        ++ LSD + ESP   F + + V 
Sbjct: 253  EDLNVAKGVVINGKISKVLKNAGLLIELSNGKAGVAHITELSDHFEESPLNGFAVDQFVR 312

Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRT----ASQSE----INNLSNLHVGDIVIGQIKRVESY 1471
             +VL+++   K  E+ L    SR     A+  E    IN   ++  GDI+ G +K     
Sbjct: 313  CKVLAIK---KNDEIDLSLRQSRINEGQANAGEWDRYINGYDDIKEGDILRGYVKSCSKI 369

Query: 1472 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1531
            G+F+++  T + G   +  LS+  V + E+++  G+ VK K++ +D     I L ++   
Sbjct: 370  GVFVSLSQT-INGRVQIKNLSQYFVKDFESLFHVGKLVKAKVIHIDPTTNHIDLSLRGK- 427

Query: 1532 FKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDM-----DMESEDGGSLVLA 1586
               D +++  +   +    + E     +    E      Q++     + + +D    V  
Sbjct: 428  ---DVNDVDPAPPPKRKLPVNEESEIKKKKKNEEKEENEQNLSSSESEFDIDDAKDKVKE 484

Query: 1587 QIESRA-SVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEI 1645
            ++  +   +   + N ++ +P  +   S +    ++   ++ K  +  KK  K+  E+ +
Sbjct: 485  EVTKQTLKIDSFDWNEEETKPKKNESDSGDSSEDEKKAKVEAKKTKRQKKAAKKAEEEFL 544

Query: 1646 RAAEERLLEKDAP-RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1704
              AE  LL+ D    + ++F+RL   SPNSS +WI+YMAF L   +++KAR +A +ALQT
Sbjct: 545  HKAELALLDTDRHVDSSEDFDRLCLGSPNSSIIWIQYMAFHLHSVEIDKARHVARKALQT 604

Query: 1705 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1764
            I+ REE EKLN+WVA  NLEN YG    E++ KV   A+Q  DPKK++L +L ++ RT +
Sbjct: 605  ISFREEQEKLNVWVALLNLENMYGT--NESLEKVLHEAVQTNDPKKIYLKVLDIFARTNK 662

Query: 1765 NKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQ 1823
               A++L   ++K+FK S  VW+     L+K  + E  + ++QR L SL   KHI  I Q
Sbjct: 663  ITEAEKLYRIVLKRFKGSKSVWISYGFFLMKCGKLEEARNLLQRCLKSLHERKHIATIVQ 722

Query: 1824 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1883
             A++E+K G   RG ++ E +L  YPKR+D+WSIY+D  I++GD + +R +FER  +L +
Sbjct: 723  FALMEYKFGEPQRGSTILESVLKNYPKRSDIWSIYIDMTIKMGDYEQVRNIFERVTTLKM 782

Query: 1884 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
              KK+KF+FK+YLE+E+  G +  IE V+++  +YVE
Sbjct: 783  SAKKIKFMFKRYLEFEQKYGNKTTIEAVRKRGNDYVE 819



 Score =  130 bits (326), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 196/389 (50%), Gaps = 45/389 (11%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            +GSLV A +  IKP +L +    G  +GRIHI+ ++D        L + FK  Q V A++
Sbjct: 74   LGSLVSAVVKGIKPAQLSVTLMNGRLNGRIHISNIHDTIEQGKSPLKA-FKPLQVVEAKV 132

Query: 1122 IAKSN----------KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYV 1171
            I   +            ++ +S + ELS+KPS+LT  E  ++    +   SIG+ V G+V
Sbjct: 133  IGFRDLRTHNYLPISHTNISRSMV-ELSLKPSVLTSQETETEKKINQ--FSIGEVVNGFV 189

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
              V  +   ++++  +K ++ +L+ +    +L +++  F +G   +  +LS  ++     
Sbjct: 190  ASVTKKSLWISVNPLVKGKVSVLNISENIMDLNKWKSVFKVGLGYSFRILSCKED----- 244

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
                          ++++       + +G ++ G+ISK+L    GL++++     G  H 
Sbjct: 245  -------------FLELTRLGEDLNVAKGVVINGKISKVLKN-AGLLIELSNGKAGVAHI 290

Query: 1292 TELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1351
            TEL +     PL+G+   QFV+CKVL I +       ++LSLR S       N+ +    
Sbjct: 291  TELSDHFEESPLNGFAVDQFVRCKVLAIKKND----EIDLSLRQSRINEGQANAGEWD-- 344

Query: 1352 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1411
                 +++   +D+    I++GYVK+ +  G F+ LS+ ++ +V + NLS  +V+  E  
Sbjct: 345  -----RYINGYDDIKEGDILRGYVKSCSKIGVFVSLSQTINGRVQIKNLSQYFVKDFESL 399

Query: 1412 FPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
            F +GKLV  +V+ ++P +  ++++L+  D
Sbjct: 400  FHVGKLVKAKVIHIDPTTNHIDLSLRGKD 428



 Score = 44.3 bits (103), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 83/198 (41%), Gaps = 18/198 (9%)

Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
            ++ TR+ ED  V  G +++G +  V  NA ++  ++ G + G      L+DH E + + 
Sbjct: 245 FLELTRLGEDLNVAKGVVINGKISKVLKNAGLLIELSNGKA-GVAHITELSDHFEESPL- 302

Query: 715 KSVIKPGYEFDQLL----VLDNESSNLLLSAKYSLINSAQQLPSDASH-------IHPNS 763
                 G+  DQ +    +   ++  + LS + S IN  Q    +          I    
Sbjct: 303 -----NGFAVDQFVRCKVLAIKKNDEIDLSLRQSRINEGQANAGEWDRYINGYDDIKEGD 357

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           ++ GYV +  + G FV     + G             D    ++VG+ V++ ++ ++  T
Sbjct: 358 ILRGYVKSCSKIGVFVSLSQTINGRVQIKNLSQYFVKDFESLFHVGKLVKAKVIHIDPTT 417

Query: 824 GRITLSLKQSCCSSTDAS 841
             I LSL+    +  D +
Sbjct: 418 NHIDLSLRGKDVNDVDPA 435



 Score = 42.4 bits (98), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 495 DVKPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +V  G+V+ GK+  V  + G +++   G   +  +  +S+     P   F V   +  +V
Sbjct: 256 NVAKGVVINGKISKVLKNAGLLIELSNGKAGVAHITELSDHFEESPLNGFAVDQFVRCKV 315

Query: 554 LGVK-SKRITVTHKKTLVKSKLA-------ILSSYAEATDRLITHGWITKIEKHGCFVRF 605
           L +K +  I ++ +++ +    A        ++ Y +  +  I  G++    K G FV  
Sbjct: 316 LAIKKNDEIDLSLRQSRINEGQANAGEWDRYINGYDDIKEGDILRGYVKSCSKIGVFVSL 375

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              + G      L      +  S++HVG++VK +++   P +  I+LS 
Sbjct: 376 SQTINGRVQIKNLSQYFVKDFESLFHVGKLVKAKVIHIDPTTNHIDLSL 424


>gi|384494519|gb|EIE85010.1| hypothetical protein RO3G_09720 [Rhizopus delemar RA 99-880]
          Length = 397

 Score =  274 bits (701), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/270 (48%), Positives = 196/270 (72%), Gaps = 3/270 (1%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L ++AP+   EFERL+  SPNSS++WI YMA+ L +++++KAR+I ERAL+TIN REE E
Sbjct: 128  LNENAPQNAHEFERLLVGSPNSSYLWINYMAYELKLSEIDKARAIGERALKTINFREEQE 187

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLN+WVA  NLEN +G+  E+ + +VF+RA  YC+P KV+  +  +YER+++   A+ + 
Sbjct: 188  KLNVWVALLNLENNFGS--EDTLQEVFKRATIYCEPIKVYQHMTEIYERSDKLDKAESVW 245

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
             +M KKF  S +VW      LL+Q + E  + ++QR+L  LP+H+HI+ + + A LEFK+
Sbjct: 246  EEMCKKFGQSPEVWTGFGLFLLQQDKTEKAREILQRSLRILPKHEHIQTVLKFAQLEFKH 305

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1891
            G A+RGR++ EG +S +PKR DLW++YLD EI+ GD+D+ R LFER  SL    KKMKF+
Sbjct: 306  GEAERGRTLLEGTVSNHPKRLDLWNVYLDMEIKAGDIDMARRLFERVASLKFSSKKMKFI 365

Query: 1892 FKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            FKK+L++EKS G ++ ++ VK++ + YVES
Sbjct: 366  FKKWLQFEKSHGSDDDVQRVKERTLAYVES 395


>gi|449275571|gb|EMC84384.1| Protein RRP5 like protein, partial [Columba livia]
          Length = 585

 Score =  274 bits (700), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 137/286 (47%), Positives = 197/286 (68%), Gaps = 4/286 (1%)

Query: 1638 KEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1696
            ++++E+E+   E  L++    P++ D+F+RLV SSPNSS +W++YMAF L   ++EKAR+
Sbjct: 295  RQKKEKELCKLEAALMDPSRQPQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARA 354

Query: 1697 IAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL 1756
            +AERAL+TI  REE EKLN+WVA  NLEN YG   EE ++KVF+RA+QY +P KV   L 
Sbjct: 355  VAERALKTICFREEQEKLNVWVALLNLENMYGT--EETLMKVFERAVQYNEPLKVFQHLC 412

Query: 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1815
             +Y  +E+ K A+EL + M+K+F+    VWL+    LLKQ Q E    +++RAL +LP  
Sbjct: 413  DIYANSEKYKQAEELYHTMLKRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTK 472

Query: 1816 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875
            +H+  IS+ A LEF+ G  +  +++FE  L+ YPKRTD+WSIY+D  I+ G    +R +F
Sbjct: 473  EHVDVISRFAQLEFRFGDPEHAKALFESTLNSYPKRTDIWSIYMDIMIKQGSQQEVRDIF 532

Query: 1876 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            ER I +SL PKKMKF FK+YL+YE   G  E +  VK+ A+EYVE+
Sbjct: 533  ERVIHMSLAPKKMKFFFKRYLDYENKFGTAESVLAVKRAALEYVET 578



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 11/116 (9%)

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
            ++LSLR S     S N  +   DV+     +  I D+    +V+GYVK+VT  G F  LS
Sbjct: 12   IQLSLRQSRLNPKSNNKVE---DVE-----ITCINDVKKGQLVRGYVKSVTPSGVFFGLS 63

Query: 1389 RKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
              L  ++L  N+S  +V+     EK  P GKL+  +VL V    K VE++L   D+
Sbjct: 64   TSLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLGVNGKEKHVELSLLPEDT 119


>gi|38173705|gb|AAH38503.1| Pdcd11 protein [Mus musculus]
          Length = 394

 Score =  273 bits (698), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 138/282 (48%), Positives = 197/282 (69%), Gaps = 4/282 (1%)

Query: 1642 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1700
            E+E+   EE L++    P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AER
Sbjct: 108  EKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAER 167

Query: 1701 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1760
            AL+TI+ REE EKLN+WVA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y 
Sbjct: 168  ALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYT 225

Query: 1761 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIK 1819
            ++E+ K A EL  +M+K+F+    VW++    +L + Q G    V+QRAL  LP  +H+ 
Sbjct: 226  KSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVD 285

Query: 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879
             I + A LEF+ G  +R +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I
Sbjct: 286  VIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVI 345

Query: 1880 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
             LSL PK+MKF FK+YL+YEK  G E+ ++ VK KA+EYVE+
Sbjct: 346  HLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 387


>gi|403159936|ref|XP_003320504.2| hypothetical protein PGTG_02526 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375169342|gb|EFP76085.2| hypothetical protein PGTG_02526 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1909

 Score =  273 bits (698), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 192/644 (29%), Positives = 333/644 (51%), Gaps = 67/644 (10%)

Query: 1304 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1363
            S Y +G  +   V++I +    T+   LS+R S D    TN S  S+  D P   + + +
Sbjct: 1296 SKYQDGSEITACVIQIDKKSLTTY---LSVRPS-DLNKLTNESLKSSVKDRP---IRQWK 1348

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            +L     ++G+V+ VT  G  + +   + A+V + +L D  +   + +F IG++V+G+++
Sbjct: 1349 NLRIGTAIRGFVQRVTDHGLMLQVGTNIRAQVSVQDLFDEDMPDWKSKFRIGQVVSGKII 1408

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1483
            S+     RV +    S  +     E      L +G I+  ++  +++YG+F+ +  + + 
Sbjct: 1409 SLHNHKARVSLRENPSAPKGVPVWE-----KLQIGQILSTEVSNIQTYGMFLKVPKSKIS 1463

Query: 1484 GLCHVSELSED------HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1537
            GLCH +++ +D      H  +    Y  G K+K  I+ +D  K+++S  +K S    +A+
Sbjct: 1464 GLCHRTQIYDDPKDYEEHKKDWNKAYSEGMKLKASIISLDVSKKKVSFAIKPSVVNPEAN 1523

Query: 1538 NLQMSSEEESDEAIE-----------EVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLA 1586
            +   ++E+ S E I+           +  S+   SLL  S+V                  
Sbjct: 1524 S---AAEDLSPEVIQITDHDSDEDTDDDASHPEGSLLPTSNVD----------------- 1563

Query: 1587 QIESRASVPPLEVNLDDEQP--DMDNGIS--QNQGHTDEAKTIDEKNNRHAKKKEKEERE 1642
              E++    P  V++D  +P   +  G +   N+  TD  +  DE++       E     
Sbjct: 1564 --EAQTKAHPATVSIDFTEPCLPISTGFTWDANRSGTDNVEDQDEQSTDTDDAAE----- 1616

Query: 1643 QEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1702
               R + E   +    ++ DE ERL++ SPNSS +WI+ +   +   D+ +AR  AERAL
Sbjct: 1617 ---RGSAEVTSDPTDQQSVDEIERLLKLSPNSSHLWIRLITIYIQKLDIPQARETAERAL 1673

Query: 1703 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1762
            + I+ REE EK  +W+A  NLEN YG   EE   + F+ A    D K V+L +  +Y  +
Sbjct: 1674 EAIHYREEGEKWKVWIALLNLENTYGT--EEQFRETFKEASARNDTKTVYLKVAEIYSES 1731

Query: 1763 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQE-GVQAVVQRALLSLPRHKHIKFI 1821
             + + ADE+  + +KK+  S KVW       LK  +     +++ R+L SLP+HKH+K I
Sbjct: 1732 GKTEKADEIYSQALKKYSRSSKVWTLYGGFCLKNNRPTDPSSLLSRSLKSLPQHKHVKTI 1791

Query: 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD-VDLIRGLFERAIS 1880
            ++ A L+FK G  ++G ++FEG++  YPKR DLW++Y+D  I+ G  V+ IRGLF R   
Sbjct: 1792 AKFAQLQFKFGDPEKGHTLFEGLVDTYPKRLDLWNVYIDLHIKAGSTVETIRGLFNRMQK 1851

Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            L   PK+MK +FKK+L +E++ G++E    V Q+A +YV + ++
Sbjct: 1852 LKFNPKRMKSIFKKWLSFEQTHGDKESQGIVVQRAQDYVATLMS 1895



 Score =  146 bits (369), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 215/889 (24%), Positives = 359/889 (40%), Gaps = 161/889 (18%)

Query: 14  KDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIHAE 73
           KD  K   A++   +  KK  N   +   L     D++  FPRGGG  LT  E+ E  A+
Sbjct: 109 KDPKKKEPAAEPDQRKFKKPKNQPTDPPRLPTSTADEID-FPRGGGIQLTAYEQAE--AK 165

Query: 74  VDAEFEAVERGLH-------KKNKKKKKKTERKANETV----------DDLGSLFGDGIS 116
            D   EA ER LH       K + KK+  +E K  ++           ++ GS   D   
Sbjct: 166 RDGAQEA-ERHLHSLEPSQPKPHSKKRTLSESKTTDSGKAKGKKRAQDEEPGSHIADAYR 224

Query: 117 GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG------LAR-------- 162
                    +  K +  G+KL G++ +V   +L++ LP  L G      ++R        
Sbjct: 225 ------VEHLNHKRLIPGIKLAGMIIQVRPLELIVALPSHLLGHVPITEISRQYTQRLTE 278

Query: 163 -AADALDPILDNEIEANEDNLLP---TIFHVGQLVSCIVLQLDDDKKEIGKR-------- 210
            A D    +  N      +N L     +F VGQ + C V++   +  +   R        
Sbjct: 279 TAEDDEGSVASNSDSDRTENALKGLDEMFTVGQWIRCSVIKTATEIPKGSLRASPLVRSA 338

Query: 211 -KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-------------- 255
            K+ L++    +  G+    +Q GM LT  VKSIED GYI+  G+               
Sbjct: 339 LKVTLTIDPVHINSGIDKSDLQGGMTLTGAVKSIEDRGYIIDLGISVDSNVDSATSQASA 398

Query: 256 -SFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR--------KVVYLSSDPDTVSKC 306
            + T F+   +  + +G++ +    LQ  V  +   R            +S +   +S+ 
Sbjct: 399 NNLTAFISFADATKATGVNHQDEPSLQWEVGQVIWCRINKLSENGATCMVSVNAQDISRS 458

Query: 307 VTKDLKGISIDLLVPGMMVSTRVQSILE-NGVMLSFLTYFTGTVDIFHLQ-NTFPTTNWK 364
           V       +ID ++P  MVS  + S++   G+ ++ L +F  T+ + HL+ ++    +  
Sbjct: 459 VL--TAATNIDSILPLHMVSCLITSVIPGQGLNVTLLGFFKATIQVPHLECHSTAGVDLS 516

Query: 365 NDYNQHKKVNARILF-VDPTSRAVGLTLNPYLLHNR--------------AP--PSHVK- 406
             +   +K+ AR+L+   P+   V L  N  LL  +               P  P+H++ 
Sbjct: 517 EKFKVGQKLRARVLWDTIPSKNHVSLEGNESLLGPKIFSLSIFDHVVKLDTPGLPTHLQN 576

Query: 407 ----------------VGDIYDQSKVVRVDRGL-----------GLLLDIPSTPVSTPAY 439
                           +G  +   ++ RVD              GL ++I   PV+    
Sbjct: 577 GERTRCDKIDQLLLYPIGYTFQTVRIFRVDEEWGVYATCVNGEDGLPIEI-DPPVAFAHI 635

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
            TISD     + K    YK G+  + R+ G   ++G+    L+ S  E       D+  G
Sbjct: 636 ATISDSFLSCLSKDSGPYKVGTTHKARVTGVSPVDGVLQLTLQPSVVEQAYMRSEDIPIG 695

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
            ++ G +  + +   IV+  GG  A+    H S+ +   P KKF  GA++  RVL     
Sbjct: 696 ALMNGTIKKLTATNLIVRIEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARVLYTNPD 755

Query: 560 R--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR-- 615
           R  I +T +KTLV++   I++SY  A+        ITK+E+    + F+   +G  PR  
Sbjct: 756 RDQIVLTLRKTLVRAD-EIITSYESASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAE 814

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG 675
           +E G     +P  ++  G++VK +I++     RRI  S      R + D+  KL    S 
Sbjct: 815 AEAGYVESMKP--IFTPGRLVKVKIINVDVEKRRILASV----KRSTSDEASKL----ST 864

Query: 676 VVDVVTPNAVVVYVIAKGY-----------------SKGTIPTEHLADHLE-HATVMKSV 717
           V+DV    +  V  I   +                  KG I  E LA   +     +K+ 
Sbjct: 865 VIDVGDQVSAFVTAIRNAFIQLDLRHINADPSSSEPVKGLISVEILAKKYDISPEALKNQ 924

Query: 718 IKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVV 765
           +K G E   L+V   +    LL   Y   +  Q Q+      IH  ++V
Sbjct: 925 LKAGDEVKDLIVHTKDKEKELLIVGYKSASMPQEQMTGPIRFIHDKNLV 973



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 116/272 (42%), Gaps = 33/272 (12%)

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNI------CVSDPLSGYDEGQFVKCKVLE 1318
            G  +  ++G  GL ++I P     V F  +  I      C+S     Y  G   K +V  
Sbjct: 610  GVYATCVNGEDGLPIEIDP----PVAFAHIATISDSFLSCLSKDSGPYKVGTTHKARVTG 665

Query: 1319 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1378
            +S  V G    +L+L+ S+   +   S                 ED+    ++ G +K +
Sbjct: 666  VS-PVDGVL--QLTLQPSVVEQAYMRS-----------------EDIPIGALMNGTIKKL 705

Query: 1379 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
            T+    + +    DA V   + SD     PEK+F  G  V  RVL   P   ++ +TL+ 
Sbjct: 706  TATNLIVRIEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARVLYTNPDRDQIVLTLRK 765

Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
            +  R  +   I +  +  VG      I +VE   + I     +  GL   +E    +V++
Sbjct: 766  TLVR--ADEIITSYESASVGTCAWAMITKVEEKFMLIEFFG-HTKGLVPRAEAEAGYVES 822

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            ++ I+  G  VKVKI+ VD EKRRI   +K S
Sbjct: 823  MKPIFTPGRLVKVKIINVDVEKRRILASVKRS 854



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 105/222 (47%), Gaps = 18/222 (8%)

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV------SEDDLVKLGSLVSGVVDVV 680
           S  Y VG   K R+    P    + L+  ++P+ V      SED  + +G+L++G +  +
Sbjct: 650 SGPYKVGTTHKARVTGVSPVDGVLQLT--LQPSVVEQAYMRSED--IPIGALMNGTIKKL 705

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 739
           T   ++V +  +G     +  +H +D ++HA   K    PG +   ++L  + +   ++L
Sbjct: 706 TATNLIVRI--EGGHDAVVWPDHYSD-VKHAHPEKK-FAPGAKVKARVLYTNPDRDQIVL 761

Query: 740 SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
           + + +L+ + + + S  S     +     +  + E    + F G   G  PR++A  G  
Sbjct: 762 TLRKTLVRADEIITSYES-ASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEAEAGYV 820

Query: 800 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             +   +  G+ V+  I++V+ E  RI  S+K+S  +S +AS
Sbjct: 821 ESMKPIFTPGRLVKVKIINVDVEKRRILASVKRS--TSDEAS 860



 Score = 45.8 bits (107), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 69/135 (51%), Gaps = 14/135 (10%)

Query: 1109 SNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTV-------SEIGSKLLFEECDV 1161
            S ++ G  +TA +I        KKS    LS++PS L         S +  + + +  ++
Sbjct: 1296 SKYQDGSEITACVIQID-----KKSLTTYLSVRPSDLNKLTNESLKSSVKDRPIRQWKNL 1350

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
             IG  + G+V +V +   +L +  +++AQ+ + D   E  ++ +++ +F IG+ V+G ++
Sbjct: 1351 RIGTAIRGFVQRVTDHGLMLQVGTNIRAQVSVQDLFDE--DMPDWKSKFRIGQVVSGKII 1408

Query: 1222 SINKEKKLLRLVLRP 1236
            S++  K  + L   P
Sbjct: 1409 SLHNHKARVSLRENP 1423


>gi|298708904|emb|CBJ30860.1| rRNA biogenesis protein rrp5 [Ectocarpus siliculosus]
          Length = 2344

 Score =  271 bits (693), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/294 (44%), Positives = 199/294 (67%), Gaps = 6/294 (2%)

Query: 1632 HAKKKEKEEREQEIR-AAEERLL--EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1688
             ++KK KE RE+E R AA ER L  E  AP T  ++ERL+ ++PN S +W+K+MAF LS+
Sbjct: 2050 RSRKKAKERREEEDRIAARERALQDEDAAPETAGDYERLLVATPNDSLLWVKFMAFKLSL 2109

Query: 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748
            ADVE AR++ ER L+ ++ REE E+ N+WV+  NLE++YG+     +  V +RA Q  +P
Sbjct: 2110 ADVEGARAVCERGLKAVSFREEQERFNLWVSLINLEHKYGS--RSTLKAVSERACQNSNP 2167

Query: 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR-RVQRLLKQQQEGVQAVVQR 1807
            KKV+L +  ++E+ ++++  +E+    +KKF+HS KVW+  ++ RL +    G +  ++R
Sbjct: 2168 KKVYLHMAEMHEKAQESEECEEVFQAAVKKFRHSQKVWVAYQLSRLKRGDDAGAREALKR 2227

Query: 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1867
            +L SL RHKH+  IS+ A  EF++G  +RGRS+FEG+++ YPKR DLW++Y D+E++ GD
Sbjct: 2228 SLQSLARHKHVSVISRFAQNEFEHGSVERGRSVFEGLMASYPKRLDLWNVYFDKEVKAGD 2287

Query: 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            +   R L ER   +    K+MK +FKKYL++E   G+E R+  VK KA EYV S
Sbjct: 2288 LRAARNLLERLTGMDFNAKRMKGVFKKYLQFEMEHGDEARVNAVKAKATEYVAS 2341



 Score =  207 bits (527), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 156/482 (32%), Positives = 226/482 (46%), Gaps = 71/482 (14%)

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
           AYV IS +++E V  +EK YK G  VR R+ G   +EG A   L+ S     V  + D+K
Sbjct: 511 AYVHISRISDERVEHVEKSYKPGQKVRCRVTGSSLVEGWAAASLRPSVLSAAVLRYQDLK 570

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
           PG +V+G+V AV++FG +V+   GV+AL P  H+ +  +  P  +FKVGA +  RVL V 
Sbjct: 571 PGSLVEGEVAAVEAFGLLVKLGEGVRALVPKNHLGDVGVKNPKARFKVGARVKGRVLTVD 630

Query: 558 --SKRITVTHKKTLVKSKLAILSSYAEATDRLITH--GWITKIEKHGCFVRFYNGVQGFA 613
             S + T+T K+++VK K  ++S+Y EA +R  T   G++TK+   G  V FY  V G  
Sbjct: 631 AGSSKSTLTLKRSMVKDKREVISTYTEAKEREGTACTGFVTKVAPFGLHVSFYGNVFGLL 690

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFM-----MKPTRVSED 664
           P   L      +PS  + VGQVV C + S    + P    ++L        M  T  +E+
Sbjct: 691 PSKALTKHGIQDPSEAFAVGQVVGCVVRSCDVTTYPPKLALSLDVAGKTEEMGGTGAAEE 750

Query: 665 D-----------LVKLGSLVSGVVDV-----------------VTPN------------- 683
           D               G  VSGVV                    TP              
Sbjct: 751 DESDGEGGAASCPFSPGDTVSGVVSANQDKEGKVVVDLNLPADTTPEDTSTKKKKKKSQA 810

Query: 684 -AVVVYVIAKGYSKGTIPTEHLADHLE-HATVMKSVIKPGYEFDQLLVLDNESSN----- 736
               V   A G+    +P  HL DH       + + + PG   DQLLVL+ +        
Sbjct: 811 KQAAVATTAPGF----LPHPHLGDHASVCGQTLAAQLTPGTVIDQLLVLEVDKMGVPMVT 866

Query: 737 ---LLLSA-KYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 792
              LLLSA   S  +    +P  AS++ P  ++ GYVC +   G FVRFLGR T   PRS
Sbjct: 867 LKPLLLSAVARSGEDKEAFVPGAASNVSPGDLIAGYVCRVESFGVFVRFLGRFTALCPRS 926

Query: 793 KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 852
            A D    D S  +  G S R  +  V+ +TGR+ ++L ++   ++ A +++   LL E 
Sbjct: 927 MAADRMVEDPSGMFEEGDSARCVVQRVDEDTGRVVVTLDRTTVPTSPALYLRS--LLSET 984

Query: 853 IA 854
            A
Sbjct: 985 FA 986



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 184/366 (50%), Gaps = 46/366 (12%)

Query: 98  RKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL 157
           +K   T  ++GS      SG+ PR    ++ K ++ G    GVV ++NE D+V+ LP  L
Sbjct: 103 KKRGSTASEVGSGMLVEHSGRAPRL-EMVSFKKLNKGTLAMGVVFKINEHDMVVSLPSSL 161

Query: 158 RGLARAADALDPILDNEIEANE-------------------DNLLPTIFHVGQLVSCIVL 198
            G+ R  +  D        A                     +  L  +F  GQ+V C ++
Sbjct: 162 TGVVRRQEVSDYFHQKAASAKNTGSNRAGGRGRYFDESHAGEKPLTHLFREGQVVRCAII 221

Query: 199 QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFT 258
            L    KE   R I LSLR S++ KGLSL  + +G  +   V S EDHGY++  GL   T
Sbjct: 222 SL---AKEAKGRHIELSLRASVVNKGLSLSQLTKGSGVYGSVASAEDHGYVVTLGLDGVT 278

Query: 259 GFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDL 318
            FLP+ +  ++    ++PG  ++ V++++    + V L++DP  VS  VT   +G S DL
Sbjct: 279 AFLPKKDGPKDG---LEPGQPVEAVIQTVKAAARTVTLTADPSLVSSAVT---QGTSFDL 332

Query: 319 --LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN---------WKNDY 367
             L PGM+V   V S+L NG+++SFL YF G VD     N  P  +         W+  +
Sbjct: 333 RSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVD----HNNMPLVSGDGKDEPKGWRPLF 388

Query: 368 NQH-KKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 426
               + V AR+L VD  ++A+ LTL P+L+  R P      G +  + +VVRVD  LGLL
Sbjct: 389 RPGPEPVRARVLLVDYVNKAIRLTLRPHLMEMRTPSGLPPTGALL-EGEVVRVDPALGLL 447

Query: 427 LDIPST 432
           L +PST
Sbjct: 448 LTVPST 453



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 131/497 (26%), Positives = 220/497 (44%), Gaps = 85/497 (17%)

Query: 1108 FSNFKIGQTVTARII--AKSNKPDMKKSFLWE------------LSIKPSMLTVS----- 1148
               F +GQ +TAR++      + D K  F++             ++I  S L  +     
Sbjct: 1427 LEKFHVGQVLTARVLHFEDMTQKDPKSDFVFRLLELGLLDGDGTVTIDQSGLGEAEGEGE 1486

Query: 1149 ---EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL----DSAYEPS 1201
                + +   + EC    G+   G + +V     L+++S  ++  + +     D+     
Sbjct: 1487 EAVSVPAVPWWGECPPKAGEVHRGVITEVAEHGLLVSLSNSVRGLVPLAKLSSDATVTAK 1546

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV---------DISNDN 1252
               EF  R  +G  V    +   + + +L LV  P +D + D  +         D+ +  
Sbjct: 1547 NFGEFFER-GMGLRVLVRRVEEERRRLILSLVGVPDRDTLPDSALPAMSPGFQADVKSKA 1605

Query: 1253 MQTFIHE----GDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTEL--KNICVSDPLS 1304
             +    E    GD+V GR+   +       ++V++     GRV  TEL  +     +P+ 
Sbjct: 1606 ARNLTSESPDAGDVVEGRVDLTVKAWSPPCVMVRLDGGCIGRVCVTELSEEEAWKDNPVG 1665

Query: 1305 GYDEGQFVKCKVLEI-----------SRTVRGTFH-------------VELSLRSSLDGM 1340
               +G  VKC+VL             SR  R                 VELSLR      
Sbjct: 1666 RIKDGARVKCRVLPPLPKRSTEAQSKSRRRRSGDGDEDDEEGDGYMGPVELSLRPCRVEA 1725

Query: 1341 SSTNSSDLSTDVDTPGKHLEKIE-DLSPNM--IVQGYVKNVTSKGCFIMLSRKLDAKVLL 1397
            S               K  E I+ D +P +    + YV   +  GCF++L+  +  +VLL
Sbjct: 1726 SKN-------------KRKEAIKRDAAPKVGSTAKCYVVATSKSGCFVILNGGVSGRVLL 1772

Query: 1398 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN-LH 1456
             +LSD +V  P +EFP GKLVAG+VL+ E  + RV ++LK SD        +   S  L 
Sbjct: 1773 KHLSDRFVSDPAQEFPAGKLVAGKVLAQEKETGRVSLSLKPSDVVGGEGGALTWSSEILK 1832

Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
             G  V G +  V+ +G+FI I ++ + G+CH SE +++ +D++  +Y  G+ VK  +LKV
Sbjct: 1833 PGLKVKGTVDTVKDFGVFIQIHDSKVRGMCHRSEAADETIDDLTQVYDEGDLVKAVVLKV 1892

Query: 1517 DKEKRRISLGMKSSYFK 1533
            +K  +R+SLG+K+SYF+
Sbjct: 1893 NKNNKRVSLGLKASYFE 1909



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 101/476 (21%), Positives = 195/476 (40%), Gaps = 71/476 (14%)

Query: 1091 IHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEI 1150
            +HI+ ++D++   VE++  ++K GQ V  R+   S       +     S++PS+L+ +  
Sbjct: 513  VHISRISDER---VEHVEKSYKPGQKVRCRVTGSSLVEGWAAA-----SLRPSVLSAA-- 562

Query: 1151 GSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
                +    D+  G  V G V  V+    L+ +   ++A   +  +      ++  + RF
Sbjct: 563  ----VLRYQDLKPGSLVEGEVAAVEAFGLLVKLGEGVRA--LVPKNHLGDVGVKNPKARF 616

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
             +G  V G VL+++       L L+  +  + DK   IS    +    EG    G ++K+
Sbjct: 617  KVGARVKGRVLTVDAGSSKSTLTLK--RSMVKDKREVIST-YTEAKEREGTACTGFVTKV 673

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                 GL V    +++G +    L    + DP   +  GQ V C V     T   T+  +
Sbjct: 674  APF--GLHVSFYGNVFGLLPSKALTKHGIQDPSEAFAVGQVVGCVVRSCDVT---TYPPK 728

Query: 1331 LSLRSSLDGMSST---NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
            L+L  SLD    T     +  + + ++ G+        SP   V G V     K   +++
Sbjct: 729  LAL--SLDVAGKTEEMGGTGAAEEDESDGEGGAASCPFSPGDTVSGVVSANQDKEGKVVV 786

Query: 1388 SRKLDAKVL-------------------LSNLSDGYVESP---EKEFPIGKLVAGR---- 1421
               L A                      ++  + G++  P   +     G+ +A +    
Sbjct: 787  DLNLPADTTPEDTSTKKKKKKSQAKQAAVATTAPGFLPHPHLGDHASVCGQTLAAQLTPG 846

Query: 1422 -------VLSVEPLSKRVEVTLK----TSDSRTASQSEI---NNLSNLHVGDIVIGQIKR 1467
                   VL V+ +   + VTLK    ++ +R+    E       SN+  GD++ G + R
Sbjct: 847  TVIDQLLVLEVDKMGVPM-VTLKPLLLSAVARSGEDKEAFVPGAASNVSPGDLIAGYVCR 905

Query: 1468 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
            VES+G+F+         LC  S  ++  V++   ++  G+  +  + +VD++  R+
Sbjct: 906  VESFGVFVRFLG-RFTALCPRSMAADRMVEDPSGMFEEGDSARCVVQRVDEDTGRV 960



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 113/265 (42%), Gaps = 28/265 (10%)

Query: 1289 VHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1348
            VH + + +  V      Y  GQ V+C+V   S  V G      SLR S+          L
Sbjct: 513  VHISRISDERVEHVEKSYKPGQKVRCRVTG-SSLVEG--WAAASLRPSV----------L 559

Query: 1349 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1408
            S  V        + +DL P  +V+G V  V + G  + L   + A V  ++L D  V++P
Sbjct: 560  SAAV-------LRYQDLKPGSLVEGEVAAVEAFGLLVKLGEGVRALVPKNHLGDVGVKNP 612

Query: 1409 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS---DSRTASQSEINNLSNLHVGDIVIGQI 1465
            +  F +G  V GRVL+V+  S +  +TLK S   D R    +     +    G    G +
Sbjct: 613  KARFKVGARVKGRVLTVDAGSSKSTLTLKRSMVKDKREVISTYTE--AKEREGTACTGFV 670

Query: 1466 KRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK--VKILKVDKEKRRI 1523
             +V  +GL ++    N+ GL     L++  + +    +  G+ V   V+   V     ++
Sbjct: 671  TKVAPFGLHVSFYG-NVFGLLPSKALTKHGIQDPSEAFAVGQVVGCVVRSCDVTTYPPKL 729

Query: 1524 SLGMKSSYFKNDADNLQMSSEEESD 1548
            +L +  +    +      + E+ESD
Sbjct: 730  ALSLDVAGKTEEMGGTGAAEEDESD 754


>gi|196015127|ref|XP_002117421.1| hypothetical protein TRIADDRAFT_32523 [Trichoplax adhaerens]
 gi|190579950|gb|EDV20037.1| hypothetical protein TRIADDRAFT_32523 [Trichoplax adhaerens]
          Length = 272

 Score =  271 bits (693), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 132/269 (49%), Positives = 192/269 (71%), Gaps = 3/269 (1%)

Query: 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1715
            +A  TPD+F+RLV S PN+S  W++YMA+ L  A+++K+R +AERAL+TI+ RE    LN
Sbjct: 2    NALETPDDFDRLVISEPNNSSGWLQYMAYYLQTAEIDKSRDVAERALKTISFRESQHLLN 61

Query: 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKM 1775
            IW+A  NLEN YG   +E + KVF+RA+Q  DPK V   L  +Y R+++++LAD+L   M
Sbjct: 62   IWIAMMNLENLYGT--QETLTKVFERAVQRNDPKDVFFHLSRIYIRSDKHELADKLFQNM 119

Query: 1776 IKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
            IK+F  S KVW+R  Q L + ++ EG + ++QR+L SLP+ KH+  I + A  EFK G  
Sbjct: 120  IKRFNTSKKVWIRYGQFLFEIKKFEGARKILQRSLKSLPKRKHLDTIVKFAQFEFKYGDH 179

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
             RG ++FE +LS YPKRTDLWS+Y+D  I++GD++ +R LFE+ + ++L  KK+KFLFK+
Sbjct: 180  ARGATIFESVLSNYPKRTDLWSVYIDMVIKVGDIEQVRKLFEKVVKINLSSKKIKFLFKR 239

Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
            Y+E+E   G EE +E+VKQ A++YV S L
Sbjct: 240  YMEFESKYGNEESVEHVKQLAVDYVSSQL 268


>gi|26325946|dbj|BAB23064.2| unnamed protein product [Mus musculus]
          Length = 276

 Score =  271 bits (692), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 133/265 (50%), Positives = 188/265 (70%), Gaps = 3/265 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P + D+F+RLV SSPNSS +W++YMAF L   ++EKAR++AERAL+TI+ REE EKLN+W
Sbjct: 7    PESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVW 66

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            VA  NLEN YG+  +E++ KVF+RA+QY +P KV L L  +Y ++E+ K A EL  +M+K
Sbjct: 67   VALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKYKEAGELYNRMLK 124

Query: 1778 KFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
            +F+    VW++    +L + Q G    V+QRAL  LP  +H+  I + A LEF+ G  +R
Sbjct: 125  RFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVER 184

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
             +++FE  LS YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL
Sbjct: 185  AKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIHLSLAPKRMKFFFKRYL 244

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVES 1921
            +YEK  G E+ ++ VK KA+EYVE+
Sbjct: 245  DYEKQHGTEKDVQAVKAKALEYVEA 269


>gi|428178387|gb|EKX47262.1| hypothetical protein GUITHDRAFT_69529 [Guillardia theta CCMP2712]
          Length = 306

 Score =  269 bits (688), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 134/279 (48%), Positives = 195/279 (69%), Gaps = 4/279 (1%)

Query: 1645 IRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            +R  EE LL+ +  P T +EFER+V SSP+SS+VWIKYMAF L M +++KAR IA+RAL+
Sbjct: 27   LREKEEALLDPEKVPETAEEFERMVLSSPSSSYVWIKYMAFFLEMTEIDKAREIADRALK 86

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
            TI+ REE EK N+WVA  NLEN YG    E+++ VF++A +  D KK+H+ LLG++ER  
Sbjct: 87   TISFREEQEKFNVWVARLNLENLYGT--RESLMSVFEQACKLNDSKKMHMQLLGIFERGG 144

Query: 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQ-RLLKQQQEGVQAVVQRALLSLPRHKHIKFIS 1822
              ++ ++    + +KF+ SCKVWLR    +L     E    +++RAL ++P+ KH+K I 
Sbjct: 145  DAQVTEQFFKTLTRKFRKSCKVWLRYCTFKLRGAHPEAAGRMLERALEAIPKRKHVKLIH 204

Query: 1823 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882
            + A +E+K G A+RGR++ EG++   PKR DLWS+++D E++ G V+  R L ERAI+L 
Sbjct: 205  KFATMEYKLGSAERGRTLMEGVVVSSPKRIDLWSVFVDLELKSGHVEAARQLLERAITLK 264

Query: 1883 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            L  ++ KFLFKK LE EK+ G+ ER+  VK+KA E+VES
Sbjct: 265  LKGRQAKFLFKKMLELEKTHGDAERVAEVKRKAREWVES 303


>gi|260841321|ref|XP_002613865.1| hypothetical protein BRAFLDRAFT_119888 [Branchiostoma floridae]
 gi|229299255|gb|EEN69874.1| hypothetical protein BRAFLDRAFT_119888 [Branchiostoma floridae]
          Length = 1638

 Score =  268 bits (685), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/282 (46%), Positives = 200/282 (70%), Gaps = 4/282 (1%)

Query: 1642 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1700
            ++E+  AE  LL++D  P++ D+F+RLV SSP+SS +W++YMAF L   +++KAR++AER
Sbjct: 1351 DKELYKAELALLDEDRPPQSADDFDRLVLSSPDSSILWLRYMAFHLHSTEIDKARTVAER 1410

Query: 1701 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1760
            AL+TI+ REE EKLN+WVA  NLEN YG   EE+++ VFQRALQ+ +   +   L+ +Y+
Sbjct: 1411 ALKTISFREEKEKLNVWVALMNLENMYGT--EESLMTVFQRALQHNEALTIFKQLVNIYK 1468

Query: 1761 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIK 1819
            RT + + AD+L   M+K+F+ +  VW+   Q L++ ++ E   +++QR+  SL +  H++
Sbjct: 1469 RTGKTQEADQLYGTMVKRFRGNKDVWIDYGQFLMENKRAEAAHSLMQRSFKSLDKQDHVQ 1528

Query: 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879
             IS+ A++EFK G  +RGR+MFE ILS YPK+  +WS+YL+  I+ GD+D +R  F+R  
Sbjct: 1529 VISRFAVMEFKLGDVERGRTMFENILSNYPKQVSIWSVYLEMLIKTGDMDQVRLAFDRVT 1588

Query: 1880 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            +L L  K MK  FK+YLE+EK  G++  +  VK+KAMEYVE+
Sbjct: 1589 ALHLSTKNMKGFFKRYLEFEKKHGDDNTVSAVKRKAMEYVEA 1630



 Score =  246 bits (627), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 190/665 (28%), Positives = 325/665 (48%), Gaps = 67/665 (10%)

Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
           ++  G +V C++ ++   K   G  +I LSL    + +GL   T++ GMV  +  + ++ 
Sbjct: 87  LYQAGAMVRCVIAEVVTSKS--GHPRILLSLNPRDVNQGLQGTTLKPGMVGISPFQGLKY 144

Query: 246 HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
             Y     L                    +P L L   VRS+    + V L+  P  + K
Sbjct: 145 KMYTAPMRL-------------------AQPLLCL---VRSVVSGGRSVNLTVSPTLLQK 182

Query: 306 CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 365
            V K+   +++D L PG +V   V S+  +G++  FL  FTG+V   HL      T    
Sbjct: 183 AVAKEDLDLTLDTLTPGTLVEATVTSVQNHGILAEFLG-FTGSVSRVHL-----PTKRAE 236

Query: 366 DYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP------PSHVKVGDIYDQSKVVRV 419
            Y + ++V A IL++ PT++ VGL+    L   R        P+   +G +Y ++ VV V
Sbjct: 237 PYRKGQRVKACILYIHPTTKTVGLSFQSRLWDGRTLVDVQELPA---IGTVYKKAPVVHV 293

Query: 420 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 479
             G+G+ + + +    TP +  +S ++++ V  +E  +K G+    R++    L+G A  
Sbjct: 294 WSGIGVTMKLSA---ETPGFAAVSQLSDQPVESIENTFKPGTQHSCRVINCSPLDGQAIV 350

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
            LK S  E       D+KPG VV+GK+ +V S+G  V     V+ +    H+++  +  P
Sbjct: 351 SLKKSVIEQPFLRLQDLKPGQVVEGKITSVQSYGITVSLSNYVRGVVSKIHLADIILKNP 410

Query: 540 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            KKF  G  +  RVL V +  +++ +THK+TL+ SKL I++SY  A      HG++  ++
Sbjct: 411 AKKFNEGDMIKCRVLNVATAGRQLALTHKRTLLTSKLPIMASYQAAKPGTWAHGFVLSVQ 470

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             GC V FYN V+G  P+ E+  +   +P  M++ GQVVKCR+MS  PA  ++ +S  +K
Sbjct: 471 DFGCIVMFYNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMSCNPALEKLTVS--LK 528

Query: 658 P----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 713
           P    T V+ D   ++G +V+  V  V P+++ V V     + G +P  HL+DH E+ ++
Sbjct: 529 PEKSGTPVAAD--FEVGKMVNVEVTEVKPDSLGVKVQGSD-TPGFLPMMHLSDHQENCSL 585

Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN--SAQQLPSDASHIHPNSVVHGYVCN 771
           + S    G      +   + ++  +++ K SL    ++ Q+    S +  + V+ G+V  
Sbjct: 586 LLSRYSVGDVIQDAMYCCSRATGSMVTLKPSLKKAVTSGQVVETFSDLRTDRVLRGWVRT 645

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG--------QSVRSNILDVNSET 823
           +   G FV F G   G AP++       A  SKT+  G         SVR   LD+ +  
Sbjct: 646 VKPFGVFVEFPGGWVGLAPKADLT----AVASKTHCQGTNLNVGDSTSVRILHLDIPNNI 701

Query: 824 GRITL 828
             ++L
Sbjct: 702 AEVSL 706



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 161/372 (43%), Gaps = 51/372 (13%)

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNK--------PDMKKSF---LWE 1137
            G +HI+EV DD     E   +   +G  V  R+I  S+K        P  +  F   ++ 
Sbjct: 873  GIVHISEVKDDVREG-EAPMAKLLVGSIVPGRVIGISHKKVKSLKSLPFSRPGFEEVVYN 931

Query: 1138 LSIKPSMLTVSEIGSKLLFEE----CDV-SIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
            +S++ S++   +   K L  +     DV    Q+V  Y+  + +    +++S  ++ +L 
Sbjct: 932  VSLRESVVKADDKFKKFLLPDEKLRTDVYKEDQKVMFYLQSIQDSHVHVSVSPGVQGKLD 991

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
            +L  +    +L+     F    A  G + SI++E   L L                S   
Sbjct: 992  LLSCSDNVEDLKNPPAMFKPKCAYLGTITSIDRESSTLHL----------------SRLG 1035

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
              T +  G +V  +++K + G   L +  G    G  + T+L +   S+PLS +   Q +
Sbjct: 1036 KATKLAPGLVVNAQVAKKVPGKLLLSLPFGGK--GFANLTDLSDSYSSNPLSTFKVNQLL 1093

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            +C VLE S       HV +SLR S  G      +D            E +ED+    IV+
Sbjct: 1094 RCCVLECS----SKRHVRVSLRPSKIGGKVRKIND---------PDYETVEDIVEGDIVR 1140

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLS 1429
            GYV++    G F  LS K+  +V   + +  +V   +   K FP+GKLV  +VL V   S
Sbjct: 1141 GYVEDCNKHGVFAALSHKVKGRVQYKHATSYFVRKQDELKKFFPVGKLVTAKVLEVSYKS 1200

Query: 1430 KRVEVTLKTSDS 1441
              +E++L   D+
Sbjct: 1201 SHLELSLLEKDT 1212



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 163/371 (43%), Gaps = 37/371 (9%)

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFE 535
           T + KA A E L  T   + PG +V+  V +V + G + +F G  G  +   LP     E
Sbjct: 178 TLLQKAVAKEDLDLTLDTLTPGTLVEATVTSVQNHGILAEFLGFTGSVSRVHLP-TKRAE 236

Query: 536 IVKPGKKFKVGAELVF---RVLGVKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITH 590
             + G++ K     +    + +G+ S +  +   +TLV  +   AI + Y +A    + H
Sbjct: 237 PYRKGQRVKACILYIHPTTKTVGL-SFQSRLWDGRTLVDVQELPAIGTVYKKAP---VVH 292

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP----A 646
            W       G  ++      GFA  S+L   P     + +  G    CR+++  P    A
Sbjct: 293 VW----SGIGVTMKLSAETPGFAAVSQLSDQPVESIENTFKPGTQHSCRVINCSPLDGQA 348

Query: 647 SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
              +  S + +P    +D  +K G +V G +  V    + V +    Y +G +   HLAD
Sbjct: 349 IVSLKKSVIEQPFLRLQD--LKPGQVVEGKITSVQSYGITVSL--SNYVRGVVSKIHLAD 404

Query: 707 HLEHATVMKSVIKPGYEFD----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH--IH 760
                 ++K+  K   E D    ++L +      L L+ K +L+ S  +LP  AS+    
Sbjct: 405 -----IILKNPAKKFNEGDMIKCRVLNVATAGRQLALTHKRTLLTS--KLPIMASYQAAK 457

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
           P +  HG+V ++ + GC V F   + G  P+ +     + D  K +Y GQ V+  ++  N
Sbjct: 458 PGTWAHGFVLSVQDFGCIVMFYNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMSCN 517

Query: 821 SETGRITLSLK 831
               ++T+SLK
Sbjct: 518 PALEKLTVSLK 528



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 111/256 (43%), Gaps = 33/256 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            G +V G+I+ + S   G+ V +  ++ G V    L +I + +P   ++EG  +KC+VL +
Sbjct: 370  GQVVEGKITSVQSY--GITVSLSNYVRGVVSKIHLADIILKNPAKKFNEGDMIKCRVLNV 427

Query: 1320 SRTVR--GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1377
            +   R     H    L S L  M+S  ++                    P     G+V +
Sbjct: 428  ATAGRQLALTHKRTLLTSKLPIMASYQAA-------------------KPGTWAHGFVLS 468

Query: 1378 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437
            V   GC +M    +   +    ++    E P K F  G++V  RV+S  P  +++ V+LK
Sbjct: 469  VQDFGCIVMFYNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMSCNPALEKLTVSLK 528

Query: 1438 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1497
               S T         ++  VG +V  ++  V+   L + ++ ++  G   +  LS DH +
Sbjct: 529  PEKSGTPVA------ADFEVGKMVNVEVTEVKPDSLGVKVQGSDTPGFLPMMHLS-DHQE 581

Query: 1498 NIETI---YRAGEKVK 1510
            N   +   Y  G+ ++
Sbjct: 582  NCSLLLSRYSVGDVIQ 597



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
            +++DL P  +V+G + +V S G  + LS  +   V   +L+D  +++P K+F  G ++  
Sbjct: 363  RLQDLKPGQVVEGKITSVQSYGITVSLSNYVRGVVSKIHLADIILKNPAKKFNEGDMIKC 422

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYGLFITI 1477
            RVL+V    +++ +T K    RT   S++  +++      G    G +  V+ +G  +  
Sbjct: 423  RVLNVATAGRQLALTHK----RTLLTSKLPIMASYQAAKPGTWAHGFVLSVQDFGCIVMF 478

Query: 1478 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             N N+ GL    E++++  ++   ++  G+ VK +++  +    ++++ +K
Sbjct: 479  YN-NVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMSCNPALEKLTVSLK 528



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 159/402 (39%), Gaps = 75/402 (18%)

Query: 750  QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            Q+LP+  +      VVH +       G  ++      GFA  S+  D     +  T+  G
Sbjct: 276  QELPAIGTVYKKAPVVHVWSG----IGVTMKLSAETPGFAAVSQLSDQPVESIENTFKPG 331

Query: 810  QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
                  +++ +   G+  +SLK+S              ++E+    LQ  K         
Sbjct: 332  TQHSCRVINCSPLDGQAIVSLKKS--------------VIEQPFLRLQDLKP-------- 369

Query: 870  EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQA 922
                 G V+EGK+     +G+ VS   +  V G ++   LA   +++       G +I+ 
Sbjct: 370  -----GQVVEGKITSVQSYGITVSLSNY--VRGVVSKIHLADIILKNPAKKFNEGDMIKC 422

Query: 923  AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 982
             +L+VA A R + L+ K   +       ++ QA K                 +  V  V+
Sbjct: 423  RVLNVATAGRQLALTHKRTLLTSKLPIMASYQAAKPG------------TWAHGFVLSVQ 470

Query: 983  ENYLVLSLPEYNHSIGYASVSDYN--TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL 1040
            +   ++    YN+  G     +     Q+ P+K F  GQ V   VM+   +    +L + 
Sbjct: 471  DFGCIVMF--YNNVKGLLPKREMTQEAQEDPRKMFYKGQVVKCRVMS--CNPALEKLTVS 526

Query: 1041 LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDD 1099
            LK     E S +  A   + ++VG +V  E+TE+KP  L +K  G    G + +  ++D 
Sbjct: 527  LKP----EKSGTPVA---ADFEVGKMVNVEVTEVKPDSLGVKVQGSDTPGFLPMMHLSDH 579

Query: 1100 KSNVVENLFSNFKIGQTVTARIIAKSN--------KPDMKKS 1133
            + N    L S + +G  +   +   S         KP +KK+
Sbjct: 580  QEN-CSLLLSRYSVGDVIQDAMYCCSRATGSMVTLKPSLKKA 620



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 23/226 (10%)

Query: 1306 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSL-DGMSSTNSSDLSTDVDTPGKHLEKIED 1364
            Y +GQ VK  +L I  T +    V LS +S L DG +  +  +L          +  +  
Sbjct: 238  YRKGQRVKACILYIHPTTK---TVGLSFQSRLWDGRTLVDVQELPA--------IGTVYK 286

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
             +P + V   +      G  + LS +      +S LSD  VES E  F  G   + RV++
Sbjct: 287  KAPVVHVWSGI------GVTMKLSAETPGFAAVSQLSDQPVESIENTFKPGTQHSCRVIN 340

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1484
              PL  +  V+LK    ++  +     L +L  G +V G+I  V+SYG+ +++ N  + G
Sbjct: 341  CSPLDGQAIVSLK----KSVIEQPFLRLQDLKPGQVVEGKITSVQSYGITVSLSNY-VRG 395

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +     L++  + N    +  G+ +K ++L V    R+++L  K +
Sbjct: 396  VVSKIHLADIILKNPAKKFNEGDMIKCRVLNVATAGRQLALTHKRT 441


>gi|330801352|ref|XP_003288692.1| hypothetical protein DICPUDRAFT_152947 [Dictyostelium purpureum]
 gi|325081255|gb|EGC34777.1| hypothetical protein DICPUDRAFT_152947 [Dictyostelium purpureum]
          Length = 915

 Score =  266 bits (680), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 219/728 (30%), Positives = 369/728 (50%), Gaps = 95/728 (13%)

Query: 1248 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1307
            I N+ +   +  GD + G IS+I  GV  + V+I  +L G V   +  +     P S Y 
Sbjct: 228  IENNQLNKKLSVGDKILGTISEI--GVLSMKVKIYNNLSGEVKLIDCNDEFRDSPFSIYS 285

Query: 1308 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDG---------MSSTNSSDLSTDVDTPGKH 1358
             G  +K  V  IS+       + LSL+ SL G          ++       T+V + G H
Sbjct: 286  VGSVIKVFVKSISKD-----GISLSLKKSLLGPEHKFNPKYKNNPTQERAITNVFSHGSH 340

Query: 1359 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1418
                          GY+     +   + L+ KL+  +    +   ++   E    +G L+
Sbjct: 341  ------------AWGYIIEKNQQIVRVELADKLNGVIQNEVVGPFHMHLCE----VGSLI 384

Query: 1419 AGRVL---SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1475
               VL    VE  ++ +  +++     T        L  L   DI+  ++ RVE++GLF+
Sbjct: 385  QVTVLGDPKVEGSNQVLNCSIRIDKKIT--------LQTLKTDDILPLEVTRVETFGLFV 436

Query: 1476 TIENTNLVGLCHVSELSEDHV--DNIETIYRAGEKVKVKIL--KVDKEKRR--ISLGMK- 1528
               ++N+  L H+ E S++ +  + +   +  G+ V  K +  K  KEK +   +  +K 
Sbjct: 437  --RHSNITALVHIKESSDEKLTPEQLAQNFSVGDLVLGKCIGQKFSKEKNKNFFNFSLKP 494

Query: 1529 --------SSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDG 1580
                     SYFK   DN   + E++S      + ++   S+   S  +++   +E E  
Sbjct: 495  EHFVDVDTESYFKVSWDNQDPTEEQQS------INTHISLSVQLKSIQSIKPYLVEKEQK 548

Query: 1581 -GSLVLAQIES-----RASVPPLEVNLDDEQPD-----MDNGISQNQGHTDEA------K 1623
             G L   Q++      +    PLE   DDE        +++   + +  TDEA      +
Sbjct: 549  KGELSAKQLQQNLNNDQEEQQPLEEAEDDEFKSTSLLSLEDSKKRKKDETDEADEFEENQ 608

Query: 1624 TIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYM 1682
             +D+K  +  K+K K ++E+EI+  E+ L + + AP +P +FERL+  SPNSS++WIKYM
Sbjct: 609  VVDKKKQKTEKEKSKNKQEEEIKEREDLLADHNVAPESPQDFERLLLGSPNSSYLWIKYM 668

Query: 1683 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1742
            ++ LS++++ KAR   E+A++ I   E  E+ NIW+A +NLEN YG    E ++K+FQR+
Sbjct: 669  SYYLSLSEISKARETGEKAIKKILATEVLEQRNIWIALYNLENLYGTA--ETLLKLFQRS 726

Query: 1743 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGV 1801
            +QY DPK ++L ++ + E T + +  +E    + KK K S K+W R  + LLK Q+ +  
Sbjct: 727  IQYQDPKTMYLTIIQILESTNKVERCEEYFKMLFKKTKSSAKIWCRYGEFLLKNQKLDQF 786

Query: 1802 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861
              V+ RAL  LP+ K IK I++   LE+K G  +RGR++FEG++S YP RTD+W+IYLD 
Sbjct: 787  NGVLSRALECLPKKKQIKVINKFGQLEYKLGDVERGRTIFEGLVSNYPNRTDIWNIYLDM 846

Query: 1862 EIRLGDV--------DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1913
            E+R  +         D IR LF R ++L +  + +K  FK++L +EK  G    I+ VK+
Sbjct: 847  ELRDKESIKSNKDLRDKIRELFNRTVNLKVSDRNIKQFFKRFLTFEKDFGNPRSIDDVKK 906

Query: 1914 KAMEYVES 1921
             A+++VE+
Sbjct: 907  LALKFVEN 914


>gi|346324040|gb|EGX93638.1| Nucleic acid-binding, OB-fold-like protein [Cordyceps militaris CM01]
          Length = 1774

 Score =  263 bits (671), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 350/1435 (24%), Positives = 602/1435 (41%), Gaps = 173/1435 (12%)

Query: 2    AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHS 61
            +A   K    S  D PK   A KN   +  K                D+ P+FPRGG   
Sbjct: 18   SAKQSKEANPSKTDTPKPTDAPKNAVVSRLK----------------DEEPLFPRGGASV 61

Query: 62   LTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPR 121
            LT  E+ +I  E  A+  A +       K +KK+    A++  D       D  S K+  
Sbjct: 62   LTPLEQKQIQLEAKAD-AAHDDEFSTGGKPQKKQKRVGASKKSDKKTETKSDDDSVKI-- 118

Query: 122  YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEAN--- 178
                +  K +  G  + G +  +N   L + LP  L G      A+   L N +++    
Sbjct: 119  --ESLNFKKLVKGSIVLGQITRINNLALEVALPNNLTGHVSIV-AISEQLTNRLQSGAKD 175

Query: 179  --------------EDNLLPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIWLSLRLSLLYK 223
                          ED  L +IF VGQ +   VL  +D       KRKI LSLR +    
Sbjct: 176  EDVDEKEDESDGEGEDVDLKSIFEVGQFLRAYVLSTVDGAVSGKSKRKIELSLRPTEANT 235

Query: 224  GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-------VKP 276
            GL+ +       + A V S+EDHG I+  G+   +GFLP      N+ ID       ++ 
Sbjct: 236  GLTKDDAVPHCTVAAAVASVEDHGCIMDLGIDGLSGFLP------NAEIDATFKRERLQE 289

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G +    V +   + KV  L+   D + K      +  +I+  +PG  V+  +     +G
Sbjct: 290  GAVFLSQVTANQGSGKVAQLTLKQDKIGKVSNHPAEATTINTFLPGTAVNVLITGNSSSG 349

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPY 394
            V    + +   T D+ H       T+ ++ Y    KV ARI+   PTS+   +G+TL P+
Sbjct: 350  VTGKIMGHVDATADLIHSGIGPFGTDVESKYKIGSKVKARIICNFPTSKDPKLGITLLPH 409

Query: 395  LL-----------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS 443
            L+            +  P   + +  I +Q  V  V+  +GL +D+    +    +V IS
Sbjct: 410  LMALTKKRPEGPKRSSLPLQVIPIASIVEQCTVRHVEADMGLFVDVGVPGLC--GFVHIS 467

Query: 444  DVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGM 500
             V + +V  L +    YK GS  + R++G+  ++G+     + +  E       DV  G 
Sbjct: 468  RVKDGKVDALYESSGPYKAGSTHKGRVVGYSEIDGVFQLSFQKTVLEQKYIRQEDVPVGA 527

Query: 501  V----VKGKVIAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            V    ++  +I  D   G  +Q   G+    P  H+S+ ++  P KKF+ G ++  RVL 
Sbjct: 528  VLTCDIEKLIINEDGVNGLTLQIAEGITGFVPERHLSDVKLQHPEKKFRQGMKIKARVLS 587

Query: 556  --VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  KRI +T KKTLV S+  I+ SY +        G I K+E  G  ++FY+ ++GF 
Sbjct: 588  NDLIKKRIRLTLKKTLVNSETPIIRSYDDVKVGSQALGTIIKLESSGARIQFYDELRGFL 647

Query: 614  PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLV 667
            P SE+      +PS  + VGQVV   ++   P  RR+ +S      F ++     ++  +
Sbjct: 648  PISEMSEAYIRDPSEHFRVGQVVSVHVLDVDPERRRLVVSCKDPGAFGLEKQNALKN--I 705

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFD 725
             LG +VS  V   + + V V  +     K  +P  HL D    ++   +K V   G    
Sbjct: 706  SLGDIVSAKVTQKSEDQVFVE-LEGSLLKAILPVSHLTDKSASKNQFALKRV-SAGQTLS 763

Query: 726  QLLVLDNESS--NLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
             L+V+D   S  ++ L+ K SL+++A +  L        P  +  G+V NI  T  FV+F
Sbjct: 764  NLVVIDKNDSRRSITLTQKPSLVHAAAEGRLLKSFEQARPGKLFAGFVKNITATAVFVQF 823

Query: 782  LGRLTGFAPRSKAVDGQRAD----LSKTYYVGQSVRSNILDVN-------SETGRITLSL 830
             G L    P+++     +A     L K   +   + S I D+N       S      ++ 
Sbjct: 824  AGSLNALLPKARLAPEAQAKPDFGLHKNDSIEVRIVSTIPDLNRIMVAPASAPADQDIAG 883

Query: 831  KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 890
            K     +  A  +    + + K+  ++ ++ N          I+ S ++G++  +N FG 
Sbjct: 884  KSESAKAAPADGLAFGSITQAKVTSIKETQLNVQ--------IVDSGVQGRIDVANVFG- 934

Query: 891  VVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFRE 948
              S+++  D       H L  AT   G V++  ++ V  AK  R + +S ++       E
Sbjct: 935  --SWDDIPD-----PKHPL--ATFHKGQVLRVKVVGVHDAKDHRFLPISHRSAH--SILE 983

Query: 949  ANSNRQAQKKKRKREAS-KDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYN 1006
              + +         E + + L V QT  A V  + + YL ++L P     I     SD  
Sbjct: 984  LTTRQTDLDDTTPNELTFESLKVGQTHVAFVNNLTQQYLWVNLSPSVRGRISAMEASDDL 1043

Query: 1007 TQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGS 1065
            +Q    +  F  G ++   V+++ + +      L L A     ++SS       S     
Sbjct: 1044 SQLNDLEGNFPPGSALKVRVVSINAENNH----LDLSA----RSASSNDIVSWDSIKANM 1095

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI--IA 1123
            ++  +IT++   ++ +K      G +H+ ++ D+   V     + ++ G+ V   +  + 
Sbjct: 1096 ILPGKITKVNERQILVKLSESVSGPVHLPDMADNFDGVNT---TQYRKGEIVRVAVVDVD 1152

Query: 1124 KSNKPDMKKSFLWELSIKPS--MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
            KSNK          LS +PS  M +   +  K + +   +S G  V G+V  V ++   +
Sbjct: 1153 KSNK-------RLRLSTRPSRIMSSTLPVKDKEISDIAQLSSGDIVRGFVKNVADKGLFV 1205

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
             +   + A + I  S      L+E++  F + + V G ++ I+   K + + L+      
Sbjct: 1206 LLGGQVSALVKI--SNLSDRYLKEWKDEFQVDQMVKGRIIFIDNAAKQIEMSLK------ 1257

Query: 1242 SDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1299
                VD       T+  I  G IV G++ K+      +++    ++ G  H +++    V
Sbjct: 1258 -SSVVDEDYTPPMTYRDISVGQIVTGKVRKVADFGAFILIDNSANVSGLCHRSQMAENRV 1316

Query: 1300 SDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
             D    Y EG  VK KVLE          V++  R    G+  T   D  TD+D+
Sbjct: 1317 QDATKLYKEGDVVKAKVLE----------VDVEKRKISFGLKPTLFEDEDTDMDS 1361



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/286 (37%), Positives = 171/286 (59%), Gaps = 11/286 (3%)

Query: 1644 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            EI   +   L+ + P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR +AERA +
Sbjct: 1473 EIEVDKTAELDSNGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREVAERATR 1532

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
            TIN+REE EKLN+WVAY NLE  YG   +  + +VF+RA QY DP++VH  L  +Y ++E
Sbjct: 1533 TINMREETEKLNVWVAYLNLEVAYGT--KATIEEVFRRACQYNDPQEVHERLASIYIQSE 1590

Query: 1764 QNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKF 1820
            + K A+ L   M+KKF   +  VW      L   K +    +A++ RA   L        
Sbjct: 1591 KLKEAEALFEAMVKKFGAKTPNVWTNYAHFLHVTKGEPARARALLPRASQQLGSAHAATI 1650

Query: 1821 ISQTAILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIRGLFE 1876
            +++ A LEF  ++G  +RGR+MF G+L  +PK+ DLW+  LD E+ +  GDV  +R +FE
Sbjct: 1651 VARFAALEFHSEHGEPERGRTMFTGLLDTWPKKGDLWNQLLDLEMGVEGGDVTAVRDVFE 1710

Query: 1877 RAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            R   +  L P++ +  F+++  +E+ V  + + + V  +A E+  +
Sbjct: 1711 RRTRVRGLKPQQAEKWFRRWTAFEEGVDPKGK-DRVTARAREWAAA 1755



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 8/150 (5%)

Query: 1382 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            G  + ++  +   V   +LSD  ++ PEK+F  G  +  RVLS + + KR+ +TLK    
Sbjct: 545  GLTLQIAEGITGFVPERHLSDVKLQHPEKKFRQGMKIKARVLSNDLIKKRIRLTLK---- 600

Query: 1442 RTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
            +T   SE   I +  ++ VG   +G I ++ES G  I   +  L G   +SE+SE ++ +
Sbjct: 601  KTLVNSETPIIRSYDDVKVGSQALGTIIKLESSGARIQFYD-ELRGFLPISEMSEAYIRD 659

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
                +R G+ V V +L VD E+RR+ +  K
Sbjct: 660  PSEHFRVGQVVSVHVLDVDPERRRLVVSCK 689


>gi|213405933|ref|XP_002173738.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces japonicus
            yFS275]
 gi|212001785|gb|EEB07445.1| U3 snoRNP-associated protein Rrp5 [Schizosaccharomyces japonicus
            yFS275]
          Length = 1703

 Score =  259 bits (663), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 338/1346 (25%), Positives = 580/1346 (43%), Gaps = 124/1346 (9%)

Query: 49   DDVPVFPRGGGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERK------- 99
            D+   FPRGG   LT  E  E+   A+ DA F   +    KK  K+  +++ K       
Sbjct: 43   DNETSFPRGGASVLTPLEYKEVVNEAKRDALFTESKAKPEKKQTKQAARSKSKLSKKSKK 102

Query: 100  -ANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
             AN   DD GS+             +  + K++  G  ++G ++E+N  DL + LP  L 
Sbjct: 103  TANADDDDEGSV-----------PISHFSYKSVVEGTIVFGRISEINTLDLAVSLPNCLT 151

Query: 159  G---LARAADALDPILDNEIEANEDNL---------LPTIFHVGQLVSCIVLQLDDDKKE 206
            G   +   +D+L   LD   E +EDN          L   + VGQ V   V  + +D   
Sbjct: 152  GYVPITSISDSLSERLDKLDEVDEDNKSVAQESFPDLLDFYTVGQWVRARVTSITNDSSS 211

Query: 207  IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL 266
              K++I LSLR   +  GL  +   +G V+   V S EDHG  +  G+  FTGFLP    
Sbjct: 212  KKKKRIELSLRPQDVNGGLGADGFVKGSVIQTVVTSWEDHGIAMDLGIEDFTGFLPLG-- 269

Query: 267  AENSGIDVKPG-LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMV 325
            A N   +   G  +L  V    DR  ++    + P  + K         S+  ++PG + 
Sbjct: 270  AYNPETEFMEGQTVLCTVTSKKDRVFQLAMHQASPKALDKFP-------SVQAILPGNLA 322

Query: 326  STRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR 385
            +  +  +LENGV    +     T D+ H  +        N++   K   ARIL+  P+S 
Sbjct: 323  NVLITDVLENGVTGKLMGVLNVTSDLMH-SSLSQNERLANEFTIAKTRPARILYTIPSSP 381

Query: 386  -AVGLTLNPYLL-------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
              V +T  P+ +           P   + +G   +++KV  V   LG+  D+    V   
Sbjct: 382  PTVAVTFLPHAVDFNKTSAEQENPLEKLPLGFTVEEAKVSAVSPSLGIFCDVGVEGVRGF 441

Query: 438  AYVT-ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDV 496
            A+++ +SD   ++V      Y+  S  + RI GF  ++ L    L+ S  +       D+
Sbjct: 442  AHISRLSDSRVDKVDPSSGDYQLHSTHKARITGFSFVDNLFVLSLQESIIDQPFLRVDDI 501

Query: 497  KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
              G V+KG V+ + + G IV+   G+  L P  HM++ ++  P +KFK G  +  RVL V
Sbjct: 502  PVGKVIKGSVVRLFAQGVIVKLSEGINGLVPTAHMADVQLHFPERKFKEGLPVKCRVLAV 561

Query: 557  KS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
             S  KR+ +T KK+L+ S L I+ SY          G   +I   G  V FYN V+GF P
Sbjct: 562  DSDRKRVLLTLKKSLLNSDLPIIDSYESVQPGAKAVGVFARILNTGAVVEFYNHVRGFLP 621

Query: 615  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK---PTRVSEDDLVKLGS 671
             +E+      +    + VGQ V   +++  P +R++ LS   +     R      +++GS
Sbjct: 622  TAEMSEAYIQDARDHFKVGQTVSVTVVNCDPETRKMRLSCREQNWTNERSQRFTDLEVGS 681

Query: 672  LVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV 729
            +VSG V   T N+V+V +   G S  G I   HL+D   +    + S I+   +  ++LV
Sbjct: 682  VVSGAVSQKTENSVIVDL---GNSVNGVIQVGHLSDGDAKKCQKILSKIRATTKLSEVLV 738

Query: 730  L--DNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
            L  D E   + L+ K SLI++A+   LP   S +       G+V NI E G F+ F   +
Sbjct: 739  LRKDLEKRIVFLTLKQSLIDAAKAGMLPKTLSDLKEGVKYAGFVKNITEFGVFIEFANGV 798

Query: 786  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK--QSCCSSTDASFM 843
            T  AP++   +      +  +   QS+      ++ E  R  +SLK         D    
Sbjct: 799  TALAPKAYLSENYVPLPAALFKPFQSLTCVCFSIDMEKERALVSLKPLDKVNEKVDEITE 858

Query: 844  QEHFLLEE-KIAMLQSSKHNGSELKWVEGFIIGSV--IEGKVHESNDFGVVVSFEEHSDV 900
             ++ ++E    ++ ++  +   +L W    +I SV   +  +  + +    V   E  D 
Sbjct: 859  SKYVVIEPVDESITKAYDYTTGKLTW---GVISSVKATQLNIDLAKNVHGRVDVSEAFDN 915

Query: 901  YGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
            +  I+      +T + G  IQ  +L    AK  + + +S + V   +F E +      K+
Sbjct: 916  FEDISDPSKPFSTFKKGDKIQVRVLGTHDAKNHKFLPISHR-VSPRQFLELSIKPSVMKQ 974

Query: 959  KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE--YNHSIGYASVSDYNTQKFPQKQFL 1016
                  +       T  A V       + +S+            + +D  T     ++F 
Sbjct: 975  TEFSGEALTFKKGDTCIAFVNNTTPECIWVSVGSNLRGRIAALDASNDLETLNSITEKFP 1034

Query: 1017 NGQSVIATVMALPSSSTAGRLLLL--LKAISETETSSSKRAKKKSSYDVGSLVQAEITEI 1074
             G ++  TV+      ++G +L L  ++ + + ET S+           G  +   I+ I
Sbjct: 1035 VGSAIQCTVL------SSGEILTLSAMEHVVDYETISA-----------GDKLLGRISNI 1077

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSF 1134
              + + ++      GR+  T+V+DD      +LFS     Q V   +++  + P+ K + 
Sbjct: 1078 NDMGMIVQLPGALSGRVSRTDVSDDFETSPNSLFSR---NQFVRVYVLS-VDVPNRKIA- 1132

Query: 1135 LWELSIKPSMLTVS-EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
               LS + S      EI    +    DV + +   G+V  V +    +T+ R++  ++ I
Sbjct: 1133 ---LSTRASHFEEGKEIKDPEIKSFEDVEMNRVYRGFVTNVADTGLFVTLGRNVVGRVKI 1189

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
              +    S ++E++  F + + V   V+ +++EKK + L L+P +  +S K       + 
Sbjct: 1190 --AELFDSFIKEWKPHFQVSQLVKAKVVHVDQEKKRIELSLKPSR--VSSKEA-----SA 1240

Query: 1254 QTF--IHEGDIVGGRISKILSGVGGLVVQIGP-HLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            + F  I  G  V G + +     G L+   G  ++ G  H +E+ +  V+D    Y  G 
Sbjct: 1241 KEFSEIEVGSNVDGTVIRC-EDFGVLIRLDGTDNIVGLCHKSEIADTTVNDVTKLYSAGD 1299

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSS 1336
             V+  VL +    R    V L L+SS
Sbjct: 1300 KVRAHVLSVDPEKR---RVALGLKSS 1322



 Score =  250 bits (638), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 123/265 (46%), Positives = 174/265 (65%), Gaps = 3/265 (1%)

Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1716
            AP+ P +FER + S PNSS +WI YMA+ L + +++K+R I +RAL+ IN REE EKLN+
Sbjct: 1435 APQGPADFERKLLSEPNSSLLWIGYMAYHLGLNEIDKSREIGQRALKAINFREEEEKLNV 1494

Query: 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
            WVA  NLE  YGN  EE + K F+ A  + D   V+  L G+  + ++  LA E + +M+
Sbjct: 1495 WVALLNLEVAYGN--EETLDKTFKEACHFYDELVVYERLCGILIKQQRLDLAKEYMERMV 1552

Query: 1777 KKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835
            K+F     VWL     L+     E  + ++QR+L SLP+  H+  I + A+LEFK G  +
Sbjct: 1553 KRFSQIASVWLNYATFLMSNDDAEAARGLLQRSLQSLPKKDHVSTIEKFALLEFKQGDPE 1612

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            RGR++FEG+LS YPKR DLW++ LD EI+ GDV ++R LF+R ++  L  KK KF+FKK+
Sbjct: 1613 RGRTIFEGLLSNYPKRLDLWNVLLDMEIKQGDVSIVRRLFQRLLANKLSLKKAKFVFKKW 1672

Query: 1896 LEYEKSVGEEERIEYVKQKAMEYVE 1920
            L +EK  G  E +E VKQ+A EYVE
Sbjct: 1673 LLFEKDHGTPEGVEDVKQRAAEYVE 1697



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 155/749 (20%), Positives = 294/749 (39%), Gaps = 112/749 (14%)

Query: 801  DLSKTYYVGQSVRSNILDVNSETG-----RITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
            DL   Y VGQ VR+ +  + +++      RI LSL+                        
Sbjct: 187  DLLDFYTVGQWVRARVTSITNDSSSKKKKRIELSLRPQDV-------------------- 226

Query: 856  LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 915
                  NG      +GF+ GSVI+  V    D G+ +      D  GF+    L     E
Sbjct: 227  ------NGG--LGADGFVKGSVIQTVVTSWEDHGIAMDL-GIEDFTGFLP---LGAYNPE 274

Query: 916  SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVN 975
            +  +    +L    +++           DR  +   ++ + K   K  + + +      N
Sbjct: 275  TEFMEGQTVLCTVTSKK-----------DRVFQLAMHQASPKALDKFPSVQAILPGNLAN 323

Query: 976  AIVEIVKENYLVLSLPEYNHSIGYASV-SDYNTQKFPQKQFLNGQSVIA------TVMAL 1028
             ++  V EN +   L      +G  +V SD       Q + L  +  IA       +  +
Sbjct: 324  VLITDVLENGVTGKL------MGVLNVTSDLMHSSLSQNERLANEFTIAKTRPARILYTI 377

Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP-LELRLKFGI-G 1086
            PSS     +  L  A+   +TS+ +    +      ++ +A+++ + P L +    G+ G
Sbjct: 378  PSSPPTVAVTFLPHAVDFNKTSAEQENPLEKLPLGFTVEEAKVSAVSPSLGIFCDVGVEG 437

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1146
              G  HI+ ++D + + V+    ++++  T  ARI   S   +     L+ LS++ S++ 
Sbjct: 438  VRGFAHISRLSDSRVDKVDPSSGDYQLHSTHKARITGFSFVDN-----LFVLSLQESII- 491

Query: 1147 VSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1206
                  +      D+ +G+ + G V ++  +  ++ +S  +     +  +     +L   
Sbjct: 492  -----DQPFLRVDDIPVGKVIKGSVVRLFAQGVIVKLSEGING--LVPTAHMADVQLHFP 544

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
            +R+F  G  V   VL+++ ++K + L L+      S    D+   +    +  G    G 
Sbjct: 545  ERKFKEGLPVKCRVLAVDSDRKRVLLTLKK-----SLLNSDLPIIDSYESVQPGAKAVGV 599

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGT 1326
             ++IL+   G VV+   H+ G +   E+    + D    +  GQ V   V+      R  
Sbjct: 600  FARILN--TGAVVEFYNHVRGFLPTAEMSEAYIQDARDHFKVGQTVSVTVVNCDPETR-- 655

Query: 1327 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIM 1386
                  +R S    + TN            +  ++  DL    +V G V   T     + 
Sbjct: 656  -----KMRLSCREQNWTN------------ERSQRFTDLEVGSVVSGAVSQKTENSVIVD 698

Query: 1387 LSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS-----VEPLSKR-VEVTLKTSD 1440
            L   ++  + + +LSDG  +  +K   + K+ A   LS      + L KR V +TLK S 
Sbjct: 699  LGNSVNGVIQVGHLSDGDAKKCQK--ILSKIRATTKLSEVLVLRKDLEKRIVFLTLKQSL 756

Query: 1441 SRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
               A    +   LS+L  G    G +K +  +G+FI   N  +  L   + LSE++V   
Sbjct: 757  IDAAKAGMLPKTLSDLKEGVKYAGFVKNITEFGVFIEFAN-GVTALAPKAYLSENYVPLP 815

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
              +++  + +      +D EK R  + +K
Sbjct: 816  AALFKPFQSLTCVCFSIDMEKERALVSLK 844



 Score = 47.4 bits (111), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 146/361 (40%), Gaps = 61/361 (16%)

Query: 151  ICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKR 210
            + +   LRG   A DA      N++E    N +   F VG  + C VL       EI   
Sbjct: 1004 VSVGSNLRGRIAALDA-----SNDLETL--NSITEKFPVGSAIQCTVLS----SGEI--- 1049

Query: 211  KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAEN 269
                 L LS +   +  ET+  G  L   + +I D G I+   LP + +G + R +++++
Sbjct: 1050 -----LTLSAMEHVVDYETISAGDKLLGRISNINDMGMIVQ--LPGALSGRVSRTDVSDD 1102

Query: 270  SGIDVKPGLL------LQGVVRSIDRTRKVVYLSS------------DPDTVSKCVTKDL 311
               +  P  L      ++  V S+D   + + LS+            DP+       K  
Sbjct: 1103 --FETSPNSLFSRNQFVRVYVLSVDVPNRKIALSTRASHFEEGKEIKDPEI------KSF 1154

Query: 312  KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 371
            + + ++ +  G      V ++ + G+ ++      G V I  L ++F    WK  +   +
Sbjct: 1155 EDVEMNRVYRGF-----VTNVADTGLFVTLGRNVVGRVKIAELFDSF-IKEWKPHFQVSQ 1208

Query: 372  KVNARILFVDPTSRAVGLTLNPYLLHNRAPP----SHVKVGDIYDQSKVVRVDRGLGLLL 427
             V A+++ VD   + + L+L P  + ++       S ++VG   D + +   D G+ + L
Sbjct: 1209 LVKAKVVHVDQEKKRIELSLKPSRVSSKEASAKEFSEIEVGSNVDGTVIRCEDFGVLIRL 1268

Query: 428  DIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
            D     V       I+D    +V KL   Y  G  VR  +L     +      LK+S F+
Sbjct: 1269 DGTDNIVGLCHKSEIADTTVNDVTKL---YSAGDKVRAHVLSVDPEKRRVALGLKSSYFD 1325

Query: 488  G 488
             
Sbjct: 1326 A 1326


>gi|147794791|emb|CAN60355.1| hypothetical protein VITISV_028402 [Vitis vinifera]
          Length = 446

 Score =  256 bits (653), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 146/251 (58%), Positives = 180/251 (71%), Gaps = 41/251 (16%)

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            ++G++ ++ DFGVV++FE+++DV+GFI+++QL G T E GS +QA +LDVAK E LVDLS
Sbjct: 235  MKGRIQDAKDFGVVINFEKYNDVFGFISYYQLNGTTTERGSPVQAVVLDVAKTEHLVDLS 294

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI 997
            LK  F+DR RE +SN Q                                      YN++ 
Sbjct: 295  LKPEFLDRHREDSSNSQ--------------------------------------YNYAT 316

Query: 998  GYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE-TETSSSKRAK 1056
            GYAS+SDYNTQKF +KQF   QSVIA VMALPS S  G LLL+LK++ E TETSSSKRAK
Sbjct: 317  GYASISDYNTQKFAKKQFPRRQSVIAIVMALPSPSIVGMLLLVLKSVIEATETSSSKRAK 376

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 1116
            KKSSY+VG LVQAEITEIKPLELRLKFGIGFHGR+HI EV D+  NV+EN FSNF+IGQT
Sbjct: 377  KKSSYNVGPLVQAEITEIKPLELRLKFGIGFHGRVHIIEVCDE--NVIENPFSNFRIGQT 434

Query: 1117 VTARIIAKSNK 1127
            V+ARI+AK+NK
Sbjct: 435  VSARIVAKANK 445


>gi|167516894|ref|XP_001742788.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779412|gb|EDQ93026.1| predicted protein [Monosiga brevicollis MX1]
          Length = 265

 Score =  253 bits (646), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 124/264 (46%), Positives = 183/264 (69%), Gaps = 3/264 (1%)

Query: 1662 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1721
            ++ ER V +SPNSSF WI+Y+AF L + +++KAR++A RAL+TI    E+EK+N+WVA  
Sbjct: 4    EDHERAVMASPNSSFTWIQYIAFFLQLTELDKARAVAHRALKTIAPELEDEKMNVWVARL 63

Query: 1722 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1781
            NLEN +G+  +EA+ KVF  + Q  D  K+H+ LLG+Y R+E++   +E+   M+KKFK 
Sbjct: 64   NLENSFGS--QEALDKVFADSCQRMDALKMHMHLLGIYMRSEKHDQVEEVFQAMLKKFKS 121

Query: 1782 SCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
               VWL+  + LL Q+Q    +A+++RAL S+P+H H+  IS+  ILEFK G  +RGR++
Sbjct: 122  HKSVWLKYAEYLLNQKQFATARALLERALKSVPKHDHVDLISKFGILEFKLGDVERGRTI 181

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900
            FE +++ +PKR D+W+I++DQE+R+ D D IR LFER ++L L  KKMK  FK++LE+EK
Sbjct: 182  FENVVTTHPKRVDMWNIWIDQELRIDDEDAIRALFERVVTLRLSTKKMKHFFKRFLEFEK 241

Query: 1901 SVGEEERIEYVKQKAMEYVESTLA 1924
                 + IE VK  A  YVE   A
Sbjct: 242  EQDNADGIERVKNLARAYVEEKAA 265


>gi|154800462|ref|NP_001082837.2| protein RRP5 homolog [Danio rerio]
          Length = 1816

 Score =  252 bits (644), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/329 (44%), Positives = 212/329 (64%), Gaps = 5/329 (1%)

Query: 1596 PLEVNLDDEQPDMDNGISQNQGH-TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1654
            P E  L    P      +QN     +E K+   K +R   K+E++  EQ+    E  L++
Sbjct: 1483 PWESTLGSLTPFAPADDNQNSSEDEEEVKSKPAKKSRKELKQEQQNTEQKPSKLEAELMD 1542

Query: 1655 KDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK 1713
                P     FERL+ SSP+SS +W++YMAF L    +E+AR++AERAL+TI+ REE EK
Sbjct: 1543 TSVRPDNSTAFERLLLSSPDSSLLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEK 1602

Query: 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLY 1773
            LNIWVA  NLEN YG P  +++ KVF+RA+QYC+P  V+  L  +Y ++E+ K A+ L  
Sbjct: 1603 LNIWVAMLNLENMYGTP--DSLQKVFERAIQYCEPLLVYQQLADIYAKSEKIKEAESLYK 1660

Query: 1774 KMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832
             M+K+F+    V+L     LL+Q+Q +   A++QRAL SL   +H+  I++ A LEF+ G
Sbjct: 1661 SMVKRFRQDKAVYLSYGTFLLRQRQSDAANALLQRALQSLSSKEHVDLIARFARLEFQFG 1720

Query: 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892
             +++ +SMF+ +L+ YPKRTDLWS+++D  ++ G    +R LF+R I LS+  KK+KF F
Sbjct: 1721 NSEKAKSMFDKVLTTYPKRTDLWSVFIDLMVKHGSQKEVRELFDRVIHLSVSVKKIKFFF 1780

Query: 1893 KKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            K+YLEYEK  G  E I+ VKQKA+EYVES
Sbjct: 1781 KRYLEYEKKNGTPETIQVVKQKALEYVES 1809


>gi|388580414|gb|EIM20729.1| hypothetical protein WALSEDRAFT_69646 [Wallemia sebi CBS 633.66]
          Length = 1098

 Score =  251 bits (642), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 217/768 (28%), Positives = 369/768 (48%), Gaps = 77/768 (10%)

Query: 1200 PSELQEFQRRFHIGKAVTGHVL--SINKEKKLLRLVLRP----FQDGISDKTVDISNDNM 1253
            P E +    RF +GK V   V+        K   L L P     Q+ +++K+ D     +
Sbjct: 356  PYEKKSLSERFPVGKKVKARVIFDHPTSNPKRFSLSLLPHIVNLQNSLTEKSED--GLTI 413

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
                 +G I+ G     +    GL V I    L G VH +++ +     P      G   
Sbjct: 414  AEAFGKGRIIEGVQVITVESEKGLYVTIPDSELLGFVHISQIADDHT--PSLSSSSGA-T 470

Query: 1313 KCKVLEISRTVRGTFH---VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
            K   L  +R V  ++    V+LS++ S+                   K   K+ D     
Sbjct: 471  KVGSLHTARVVGLSYVDKIVQLSIKPSV-----------------LEKSFMKVSDAEVGA 513

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            IV G VK +     FI +S  +DA V  ++ SD  ++ PEK++     V  R+L+ E   
Sbjct: 514  IVDGIVKKIADDRMFISISGNVDAIVWPTHYSDVKLKHPEKKYRSDMKVKARILTAEADK 573

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGD---IVIGQIKRVESYGLFITIENTNLVGLC 1486
             RV  TLK    ++  +S++  +++    +   I    +  ++  G  +   N N+    
Sbjct: 574  NRVTATLK----KSLVKSDLPIITSYDASNKNVITYATVSGIKEKGAIVDFYN-NVRAFL 628

Query: 1487 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL-QMSSEE 1545
             V E+SE +  + +     G+ VKV I+KV+ E +R+   ++ +  K + + L +    E
Sbjct: 629  PVGEISESYTKHAKDALEVGQIVKVIIVKVEAEAKRMMASIRKTVPKEEREALIKERKAE 688

Query: 1546 ESDEA-----IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVL------AQIESRASV 1594
            + D++      E+    N  ++  +  +A +D D ESEDG    L      ++ E     
Sbjct: 689  QKDKSPAVVDEEDEEDVNAETMQIDGEIASKD-DSESEDGSVQGLEIDEESSEEEEDEDE 747

Query: 1595 PPLEVNLDDEQPDMDN---------GISQNQGHTDEAKTID------------EKNNRHA 1633
              + ++  +++P M           G + +    D+ K  +              NN   
Sbjct: 748  DEVTIDTTNKKPKMSTKEAKALDIGGFNWDGDDNDDEKKSNGSDEEDEDSDAESTNNDDG 807

Query: 1634 KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEK 1693
            K+K+K +  +        L+ +  P + ++FERL+  SPNSS+VWI+YM+F L +++++K
Sbjct: 808  KRKKKRKGTKHFEGDLTALMNEKPPESSNDFERLLLGSPNSSYVWIQYMSFQLKLSEIDK 867

Query: 1694 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1753
            AR IA+RAL+TI  RE  EK NIW+A  NLEN +G+  +++  +VF+ A  Y DP  +HL
Sbjct: 868  AREIAKRALKTIGFRESQEKFNIWIALLNLENTFGD--DDSFEEVFKDATSYNDPLTMHL 925

Query: 1754 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSL 1812
             +  + E +E+   A ++  K  KKF      W+   +   +   Q   ++++ R+L SL
Sbjct: 926  KVADILEASEKFDKASDVYVKSSKKFGAEVIFWVNYAEYNFRIGNQTAARSLLTRSLQSL 985

Query: 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872
             +  HI  IS+ A +EF+ G A+RG+++FEGI+  +PK+ D W IY+D   R  D+  +R
Sbjct: 986  EKRDHISCISKFAQMEFRLGDAERGKTIFEGIVESHPKQLDQWFIYVDMLSRKEDLGGLR 1045

Query: 1873 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
             +FER +S  L  KK K +FKK+L  EK +G+E  I+ VKQ+A+ + E
Sbjct: 1046 NVFERLLSHKLSTKKAKSVFKKWLTIEKELGDESGIDDVKQRAVAWNE 1093



 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 150/586 (25%), Positives = 270/586 (46%), Gaps = 62/586 (10%)

Query: 134 GMKLWGVVAEVNEKDLVICLPGGLRG-------LARAADALDPILDNEIE--------AN 178
           G+K+   +  +   DL++ LP  L                LD  ++++ +         N
Sbjct: 109 GLKVLCQIVHITAIDLIVSLPEQLLAHIPITNISTHFTQRLDSAMNDDSDDGKSVSDDGN 168

Query: 179 ED-NLLPTIFHVGQLVSCIVLQLDDD------KKE-----IGKRKIWLSLRLSLLYKGLS 226
           ED   L  +F VGQ +   VL +  D      KKE        RK+ LS+    +  GL+
Sbjct: 169 EDLPELDELFQVGQWLRATVLHVHKDSNTGRVKKEGEEIIKASRKLELSIDPRSVNDGLT 228

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS 286
            + +++   +   V+S+EDHGY++  G+P   GF+    + + SG D +    L G V S
Sbjct: 229 QKDLEKDFTIVGAVRSVEDHGYLVDLGVPDVDGFVSTTEM-DASGFDKE----LAGQVGS 283

Query: 287 I------DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
           I       ++ KVV LS +P T +K    +    +++ ++PG++++  V ++L  G+ + 
Sbjct: 284 ILPLTVTSKSNKVVNLSPNPSTFAKSYMNEAN--TLESVIPGVVLNAMVTAVLPAGLNVK 341

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLLHN 398
           F  +F GT+   H+   +   +    +   KKV AR++F  PTS  +   L+L P++++ 
Sbjct: 342 FFGFFDGTISKEHI--PYEKKSLSERFPVGKKVKARVIFDHPTSNPKRFSLSLLPHIVNL 399

Query: 399 RAPPSH-----------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           +   +               G I +  +V+ V+   GL + IP + +    +V IS +A+
Sbjct: 400 QNSLTEKSEDGLTIAEAFGKGRIIEGVQVITVESEKGLYVTIPDSEL--LGFVHISQIAD 457

Query: 448 EEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           +    L       K GS    R++G  +++ +    +K S  E      SD + G +V G
Sbjct: 458 DHTPSLSSSSGATKVGSLHTARVVGLSYVDKIVQLSIKPSVLEKSFMKVSDAEVGAIVDG 517

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRIT 562
            V  +      +   G V A+    H S+ ++  P KK++   ++  R+L  ++   R+T
Sbjct: 518 IVKKIADDRMFISISGNVDAIVWPTHYSDVKLKHPEKKYRSDMKVKARILTAEADKNRVT 577

Query: 563 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 622
            T KK+LVKS L I++SY  +   +IT+  ++ I++ G  V FYN V+ F P  E+    
Sbjct: 578 ATLKKSLVKSDLPIITSYDASNKNVITYATVSGIKEKGAIVDFYNNVRAFLPVGEISESY 637

Query: 623 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
                    VGQ+VK  I+     ++R+  S      +   + L+K
Sbjct: 638 TKHAKDALEVGQIVKVIIVKVEAEAKRMMASIRKTVPKEEREALIK 683



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 153/385 (39%), Gaps = 55/385 (14%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL- 554
           V PG+V+   V AV   G  V+F G         H+  +E     ++F VG ++  RV+ 
Sbjct: 320 VIPGVVLNAMVTAVLPAGLNVKFFGFFDGTISKEHIP-YEKKSLSERFPVGKKVKARVIF 378

Query: 555 ---GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
                  KR +++    L+   + + +S  E ++  +T   I +    G   R   GVQ 
Sbjct: 379 DHPTSNPKRFSLS----LLPHIVNLQNSLTEKSEDGLT---IAEAFGKG---RIIEGVQV 428

Query: 612 FAPRSELGLD---PGCEPSSMYHVGQVVKCRIMS-----------SIPASRRINLSFMMK 657
               SE GL    P  E     H+ Q+      S           S+  +R + LS++ K
Sbjct: 429 ITVESEKGLYVTIPDSELLGFVHISQIADDHTPSLSSSSGATKVGSLHTARVVGLSYVDK 488

Query: 658 PTRVS------EDDLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
             ++S      E   +K+     G++V G+V  +  + + + +   G     +   H +D
Sbjct: 489 IVQLSIKPSVLEKSFMKVSDAEVGAIVDGIVKKIADDRMFISI--SGNVDAIVWPTHYSD 546

Query: 707 -HLEHATVMKSVIKPGYEFD-----QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
             L+H        +  Y  D     ++L  + + + +  + K SL+ S   + +     +
Sbjct: 547 VKLKHP-------EKKYRSDMKVKARILTAEADKNRVTATLKKSLVKSDLPIITSYDASN 599

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
            N + +  V  I E G  V F   +  F P  +  +           VGQ V+  I+ V 
Sbjct: 600 KNVITYATVSGIKEKGAIVDFYNNVRAFLPVGEISESYTKHAKDALEVGQIVKVIIVKVE 659

Query: 821 SETGRITLSLKQSCCSSTDASFMQE 845
           +E  R+  S++++       + ++E
Sbjct: 660 AEAKRMMASIRKTVPKEEREALIKE 684



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 167/434 (38%), Gaps = 45/434 (10%)

Query: 441 TISDVAEEEVRKLEKKYKEGSCVRVRIL--------GFRHLEG---------LATGILKA 483
           ++SD   E++ +L++ ++ G  +R  +L        G    EG         L   I   
Sbjct: 162 SVSDDGNEDLPELDELFQVGQWLRATVLHVHKDSNTGRVKKEGEEIIKASRKLELSIDPR 221

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
           S  +GL  T  D++    + G V +V+  G +V    GV  +      +E +     K+ 
Sbjct: 222 SVNDGL--TQKDLEKDFTIVGAVRSVEDHGYLVDL--GVPDVDGFVSTTEMDASGFDKEL 277

Query: 544 --KVGAELVFRVLGVKSKRITVT-HKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
             +VG+ L   V    +K + ++ +  T  KS +   ++       ++ +  +T +   G
Sbjct: 278 AGQVGSILPLTVTSKSNKVVNLSPNPSTFAKSYMNEANTLESVIPGVVLNAMVTAVLPAG 337

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-- 658
             V+F+    G   +  +  +     S  + VG+ VK R++   P S     S  + P  
Sbjct: 338 LNVKFFGFFDGTISKEHIPYEKKS-LSERFPVGKKVKARVIFDHPTSNPKRFSLSLLPHI 396

Query: 659 -------TRVSEDDLV-----KLGSLVSGVVDVVTPNAVVVYV-IAKGYSKGTIPTEHLA 705
                  T  SED L        G ++ GV  +   +   +YV I      G +    +A
Sbjct: 397 VNLQNSLTEKSEDGLTIAEAFGKGRIIEGVQVITVESEKGLYVTIPDSELLGFVHISQIA 456

Query: 706 D-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
           D H    +      K G      +V L      + LS K S++  +    SDA      +
Sbjct: 457 DDHTPSLSSSSGATKVGSLHTARVVGLSYVDKIVQLSIKPSVLEKSFMKVSDA---EVGA 513

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           +V G V  I +   F+   G +      +   D +     K Y     V++ IL   ++ 
Sbjct: 514 IVDGIVKKIADDRMFISISGNVDAIVWPTHYSDVKLKHPEKKYRSDMKVKARILTAEADK 573

Query: 824 GRITLSLKQSCCSS 837
            R+T +LK+S   S
Sbjct: 574 NRVTATLKKSLVKS 587


>gi|383851354|ref|XP_003701198.1| PREDICTED: protein RRP5 homolog [Megachile rotundata]
          Length = 1397

 Score =  250 bits (638), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 130/324 (40%), Positives = 213/324 (65%), Gaps = 8/324 (2%)

Query: 1603 DEQPDMD----NGISQNQGHTDEAKTIDEKNNRHAKKKEKE-EREQEIRAAEERLLEKDA 1657
            D++P+++       S+++  T+E     +K    A+++EKE ++E+EIR  EE L     
Sbjct: 1069 DDKPNLELLTKESSSESEDDTEEQPKQKKKKLSAAERREKERQKEREIRQREEALASNQL 1128

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P + D+F+RLV +SP+SS +W++YMA+ L   ++EKAR++A RA++TI+ REENE+LN+W
Sbjct: 1129 PNSVDQFDRLVLASPDSSIIWLQYMAYHLQSTEIEKARAVARRAVKTISFREENERLNVW 1188

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
             A+ NLE+++G    E++  VFQ A++  D  KV+  +L ++    +    ++ +  MI 
Sbjct: 1189 NAWLNLESKFGT--SESLNDVFQEAVRTNDSLKVYTHMLTVHLEAGRQFELEKTINTMIG 1246

Query: 1778 KFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
            KFK + +VW+     LLK   ++  + ++QRAL SLP   H+  +++ AILE K G  +R
Sbjct: 1247 KFKQNPQVWIECGSVLLKMGLKDKSRHIMQRALQSLPASDHVNLMARFAILENKYGDKER 1306

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
             +++FE ILS YPKR D+WS Y+D  ++ GDVD+ R + ERA+  +LPP+KMK LFKK++
Sbjct: 1307 AQTLFEQILSSYPKRVDIWSCYVDTLVKSGDVDIARKVLERAVIQTLPPRKMKSLFKKFI 1366

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVE 1920
             +E+  G +E +  V+Q A+EYVE
Sbjct: 1367 NFEEQHGTQENVARVQQMAVEYVE 1390



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 220/940 (23%), Positives = 409/940 (43%), Gaps = 105/940 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG     ++    +       F+  E+  +KKN++K+K   +  +ET          
Sbjct: 6   FPRGGKKPQDKKSSTSL-------FKQYEKS-NKKNREKQKSGIQNKDET---------- 47

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPI 170
                +   A +++   IS G+ + G + EV + DL+I LPGGL G A+  D   +   +
Sbjct: 48  ---NLVASTAERLSYPTISEGLVVLGCIFEVTQYDLMISLPGGLIGRAQVTDISESYTNM 104

Query: 171 LDNEI-----EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL 225
           L N I     + N+   L  ++  G  V C V  +   +K     +I LSL   L+ + L
Sbjct: 105 LQNLIKTEDTQPNDFKPLSELYSCGDYVVCYVKSIQPQEK----WQIVLSLDPKLINQNL 160

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
            +  +  G  +   + SIEDHG+++  GL +   F+P     +N+       LL    VR
Sbjct: 161 DISYLHNGSKILCNISSIEDHGFVVDTGLTNIRAFIPT---PKNNEKYFCKQLLC--TVR 215

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 345
            I+    +  +          VT + +  S+D L+PG      V  IL NG+ +SF +  
Sbjct: 216 EIETNENMSTVKLSTKHKHIIVTNNTEIKSLDCLMPGTKFELYVNKILSNGLYVSFGSNH 275

Query: 346 TGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV 405
           +G ++  +L            Y+   ++   +L++ PT +    +L    + +++    V
Sbjct: 276 SGYINQLYLDEPLA------KYSVGMEITGTLLYILPTVKFGYFSL----MVDKSRNDAV 325

Query: 406 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 465
           K+GDI D++  +  + G G+ L +    V     +  ++V   +  K+ +K+  GS  + 
Sbjct: 326 KLGDIIDEATTLFRESG-GITLQLNKNGVRGFVPLKRTNV---DYDKIIEKFIPGSKHKC 381

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKA 524
           R+L +  ++ +    ++ S  E   F+  D+KPG VV  ++I++++    V    G +  
Sbjct: 382 RVLTYSWMDAVYICTMQHSLLEQKYFSLLDLKPGDVVNIRIISINAETGFVNVQLGKING 441

Query: 525 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAE 582
                H+S+  +    KK KV  E+  +VLG+ + R     T K++L+ S L +LS   +
Sbjct: 442 QVAPEHVSDAGL-SDLKKLKVDTEVEAKVLGISTARNKAYFTLKRSLLTSNLPVLSDIKD 500

Query: 583 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
           A      HG I +I   G  V+F+  ++G+ PR+    +   E +  Y VGQ V  +I S
Sbjct: 501 AECGSNYHGTIIQINNSGLLVKFFGDIKGWIPRNTSNKE-ASEVNWNYSVGQTVLVQIKS 559

Query: 643 SIPASRRINLSFMMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI---AKGYSKG 697
                 +I L+    PT  +  E+++  +G  V G +   +   V + +     +  S G
Sbjct: 560 VDQNLGKIILTI---PTEDKKREENVFTIGEHVEGTIIESSTQGVYLRISKNDGQDVSTG 616

Query: 698 TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKY---SLINSAQQL-- 752
            +P  H++  +E A ++ S   PG     L+     S  L+L+A +       S +QL  
Sbjct: 617 FLPAGHMSPCMETAALLASKCIPGDTLSALVFATTPS--LILTATFLTDEKYRSFEQLRV 674

Query: 753 ----PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
               P     I P+ V               + +  ++G  P    V        K  ++
Sbjct: 675 GDCIPCSIKDIEPDGV---------------KVILPVSGCTPFG-FVSYSNVSHFKLLHI 718

Query: 809 GQSVRSNILDVNSETGRI--TLSLKQSCCSSTDAS-----FMQEHFLLEEKIAMLQSSKH 861
            Q + + +  +N +   I  TLSLK+      D        +    L   K+A L  +K+
Sbjct: 719 HQILFAKVFSINRKEKEINVTLSLKKVYNGLLDTYSKLIVAVDTLTLYFNKLAEL--AKN 776

Query: 862 NGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQ 921
              + + +    +G  + GKV +  + G+VV+ E  +++ G ++    +G  ++ G  + 
Sbjct: 777 PFYDNRPISSVRLGQRVTGKVEKITNSGLVVALE--NNLQGIVSKDHYSG-NLKVGDTVV 833

Query: 922 AAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRK 961
             ++       LV+L+LK   +    E + N+Q +  + K
Sbjct: 834 GTVMWKNYVHELVELTLKPTTMKSISE-DQNKQIEIPQEK 872


>gi|340727098|ref|XP_003401888.1| PREDICTED: protein RRP5 homolog [Bombus terrestris]
          Length = 1510

 Score =  248 bits (633), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 122/290 (42%), Positives = 198/290 (68%), Gaps = 4/290 (1%)

Query: 1633 AKKKEKE-EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADV 1691
            A+++E+E ++E EIR  EE L     P + D+F+RLV +SP+SS VW++YMA+ L   ++
Sbjct: 1218 AERREQERQKEHEIRQREEALANNLLPNSVDQFDRLVLASPDSSIVWLQYMAYHLQTTEI 1277

Query: 1692 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1751
            EKAR++A RA++TI+ REENEKLN+W A+ NLE++YG P  E++  VFQ A++  D  K+
Sbjct: 1278 EKARAVARRAVKTISFREENEKLNVWNAWLNLESKYGIP--ESLNDVFQEAVRSNDSLKI 1335

Query: 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALL 1810
            +  +L ++    +    ++ +  MI KFKH  ++W    + L+K   ++  + ++QRAL 
Sbjct: 1336 YNHMLTVHVEAGRQIELEKTINTMIGKFKHIPEIWFNCGEALIKMGLRDKSRHIMQRALQ 1395

Query: 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1870
            SLP  +H+  +++ AI+E K G  +R +++FE ILS YPKR D+WS Y+D  ++  D+D+
Sbjct: 1396 SLPASEHVNLMARFAIMENKFGDKERAQTLFEQILSSYPKRVDIWSCYIDSLVKSNDIDI 1455

Query: 1871 IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
             R + ERA++ +LPP+KMK LFKK++ +E+  G +E +  V+Q A+EYVE
Sbjct: 1456 ARKVLERAVAQTLPPRKMKILFKKFINFEEQHGTQEDVIRVQQMAVEYVE 1505



 Score =  167 bits (422), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 156/617 (25%), Positives = 284/617 (46%), Gaps = 39/617 (6%)

Query: 119 LPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP--------I 170
           +P  A +++   IS G+ + G + EV   DL+I LPGGL G A+  D  +         +
Sbjct: 171 VPNTAERLSYATISEGLVVLGCIYEVTNYDLLISLPGGLIGRAQITDISECYTNLLQSLV 230

Query: 171 LDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETV 230
              + + NE   LP ++  G  V C V  +   ++     +I +SL  +L+ + L +  +
Sbjct: 231 KSQDSQTNEFKSLPELYTCGDYVVCYVKAIQSQER----LQILISLEPNLINQSLDVNYL 286

Query: 231 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT 290
             G  +   + SIEDHGY++  GL +   F+P    + N     K  L     V++ + T
Sbjct: 287 DSGSKIVCTISSIEDHGYVVDTGLINVRAFIPTKE-SGNEKCLCKQLLCYVKEVKTNENT 345

Query: 291 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 350
             +  L+     V      ++K  S+D L+PG   +  ++ +L NG+ +S      G ++
Sbjct: 346 STIT-LTLKQKLVKAICETEIK--SLDSLMPGTKFNLSIKKVLSNGLCVSLDENNVGFIN 402

Query: 351 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDI 410
             +L    P + + N+     K+   +L++ PT +    +    +  NR   + +K GD+
Sbjct: 403 QTYLDE--PLSKYSNNL----KITGTLLYILPTIKFAYFS--STIDKNR--DNTIKPGDV 452

Query: 411 YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
             ++ V+  + G G++L +  + +    +V+    + E    +EK +  G+  + RIL +
Sbjct: 453 VKEATVLFRESG-GIVLQLAKSGIR--GFVSFKRTSVEYDTIIEK-FAPGTTHKCRILSY 508

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLP 529
             L+G+    ++ S  E   F+ SD KPG VV  K+  +D     V    G         
Sbjct: 509 SWLDGIYICTMQRSLLEQKYFSLSDFKPGDVVNVKITNIDKVNGFVNVQYGKFNGQIAPD 568

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRL 587
           H+S+ E +   KK KV  E+  RVL V    K++ +T K++L+ S L IL++  +A    
Sbjct: 569 HISD-EGLSALKKLKVDKEVEARVLFVHIGRKKVYLTLKRSLITSDLPILANIQDAKTDS 627

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
             H  I +I KHG  V+F+  V+G+ P + L  +     +  Y +GQ +  +I +    S
Sbjct: 628 KHHATIIQIHKHGILVKFFGDVKGWIPHTALDTET-FNINWNYSIGQTILVKIQTVNTDS 686

Query: 648 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI---AKGYSKGTIPTEHL 704
             I LS   +  +  E     +G  V+G +   +   + + +     +  S G +P  H+
Sbjct: 687 GEITLSVANQDIQ-DEKATFHIGEEVAGTIIESSTQGLYLKISKNEGQTVSTGFLPAGHM 745

Query: 705 ADHLEHATVMKSVIKPG 721
           +  +E A ++ S   PG
Sbjct: 746 SPCMEIAALLASKYVPG 762



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 106/241 (43%), Gaps = 22/241 (9%)

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
           V +   ++ FAP    G    C   S   +  +  C +  S+   +  +LS   KP  V 
Sbjct: 486 VEYDTIIEKFAP----GTTHKCRILSYSWLDGIYICTMQRSLLEQKYFSLS-DFKPGDVV 540

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
              +  +   V+G V+V             G   G I  +H++D  E  + +K  +K   
Sbjct: 541 NVKITNIDK-VNGFVNV-----------QYGKFNGQIAPDHISD--EGLSALKK-LKVDK 585

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           E + ++L +      + L+ K SLI S   + ++      +S  H  +  I + G  V+F
Sbjct: 586 EVEARVLFVHIGRKKVYLTLKRSLITSDLPILANIQDAKTDSKHHATIIQIHKHGILVKF 645

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            G + G+ P + A+D +  +++  Y +GQ++   I  VN+++G ITLS+         A+
Sbjct: 646 FGDVKGWIPHT-ALDTETFNINWNYSIGQTILVKIQTVNTDSGEITLSVANQDIQDEKAT 704

Query: 842 F 842
           F
Sbjct: 705 F 705


>gi|66804133|ref|XP_635864.1| HAT repeat-containing protein [Dictyostelium discoideum AX4]
 gi|60464203|gb|EAL62362.1| HAT repeat-containing protein [Dictyostelium discoideum AX4]
          Length = 909

 Score =  248 bits (632), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 249/933 (26%), Positives = 449/933 (48%), Gaps = 137/933 (14%)

Query: 1051 SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVN-DDKSNVVENLFS 1109
            + K   +   + +G+ ++  + EI+  E+   F   + G++H+  +   DK    E++ +
Sbjct: 50   NKKEINENDKFKIGNKIEVCVKEIRDFEVITTFE-DYIGKLHVCNIPLPDKEG--ESVLN 106

Query: 1110 NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC-----DVSIG 1164
            + K G T+   I+                SI+P+    ++I +  +FE+         +G
Sbjct: 107  SIKKGNTLNCFIV----------------SIEPT----AKIITLTMFEQLKPQSKQFKVG 146

Query: 1165 QRVTGYVYKVD--NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV-- 1220
            Q+V   VY +   NE     IS      + I+ +    S+ +  + +    K +   +  
Sbjct: 147  QQVDAIVYGLTSVNEITCW-ISPTQIGTIEIISNFKNISQFKSLKEKNTFVKCLIKSIGI 205

Query: 1221 -----LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
                 LSI KE                     ISN+ M+     GDI+ G I ++  G  
Sbjct: 206  DNKIYLSIGKE--------------------SISNEKMKV----GDIMIGLIKEV--GNL 239

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
             + VQ+  +L G V   +L +   ++PLS Y     +   V  I     G   + LS   
Sbjct: 240  SIKVQLYNNLSGEVRLIDLNDELRTNPLSIYKTDTLIMVCVKSI-----GKEGILLSTYK 294

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIE-----DLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            SL G+ +        +++   KH   ++     D +    V G+V   T +   + L  +
Sbjct: 295  SLLGLKTW-------EMNPKYKHQRSVKRSITTDFTVGAQVWGFVIEKTQQIIRVELKGQ 347

Query: 1391 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
            L A + + ++    + S +    +G+LV   V+S EP    +E +L+   +         
Sbjct: 348  LIAILQVEDVGPFLLSSCD----VGRLVR-VVISSEP---TIEGSLQVVKAHLHVDKTAL 399

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD--NIETIYRAGEK 1508
                + V DI+  +I  +++YGLF+  +N  + GL H+SEL ++ VD   I+ +Y  GE 
Sbjct: 400  TPKTIEVNDIIPLEIISIKNYGLFV--KNKKVSGLAHISELDDEPVDPEQIDKLYSVGEF 457

Query: 1509 VKVKILKVDKEKRR----ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLE 1564
            V  K +  +K K +        +K  +F++      +    + ++ IEE+    + + + 
Sbjct: 458  VLGKCIGKEKNKEKGKTIFKFTLKPEHFQSIDMEQYLKCNWDQEDPIEEIYQPLKPTKI- 516

Query: 1565 NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV---------------NLDDE--QPD 1607
             S++ ++    +  D  + +    +++  +  ++                N DDE     
Sbjct: 517  ISTLPIKSFLTQLSDLTTTINNNNKNKNKLETIKEQEEEEEEEQVENKQDNDDDEFKSTS 576

Query: 1608 MDNGI-SQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD--------AP 1658
            + N I S+ +   ++ + IDE     +KKK+K E+ +     E+ + E++        AP
Sbjct: 577  LINSILSKKRKEINDDEQIDEDEITDSKKKQKTEKNKNKNKLEQEIQEREDLLANNNVAP 636

Query: 1659 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1718
              P +FER++  +PNSS++WIK+M++ L ++++ KAR I ERA++ I   +  E+ NIW+
Sbjct: 637  EGPQDFERMILGTPNSSYIWIKFMSYYLGLSEINKAREIGERAIKKIIPTQVLEQRNIWI 696

Query: 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1778
            A +NLEN YG P  ++++K+FQR++QY DPK ++L ++ + E T + +  +E    + KK
Sbjct: 697  AMYNLENLYGTP--DSLLKLFQRSIQYQDPKTMYLTIINILENTGKFERTEEYFKMLFKK 754

Query: 1779 -FKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
              KHS KVW R  + LLK    E   +++ RAL  LP+ K IK I++ A LE+K G  +R
Sbjct: 755  DGKHSAKVWCRYGEFLLKCNNIEVFNSILSRALEILPKKKQIKVINKFAQLEYKLGDIER 814

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV--------DLIRGLFERAISLSLPPKKM 1888
            GR++FEG++S YP RTD+W+IYLD E+R  +         + IR LF R I+L +  + +
Sbjct: 815  GRTIFEGLVSNYPNRTDIWNIYLDMELRDKESIKSSKELKEKIRMLFNRTIALKVSDRNI 874

Query: 1889 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            K  FK++L++EK  G       VK+ A+++VES
Sbjct: 875  KQFFKRFLQFEKEFGSNFTTNEVKKLAIKFVES 907


>gi|63102515|gb|AAH95720.1| Pdcd11 protein [Danio rerio]
          Length = 409

 Score =  245 bits (625), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 146/329 (44%), Positives = 212/329 (64%), Gaps = 5/329 (1%)

Query: 1596 PLEVNLDDEQPDMDNGISQNQGH-TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE 1654
            P E  L    P      +QN     +E K+   K +R   K+E++  EQ+    E  L++
Sbjct: 76   PWESTLGSLTPFAPADDNQNSSEDEEEVKSKPAKKSRKELKQEQQNTEQKPSKLEAELMD 135

Query: 1655 KDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK 1713
                P     FERL+ SSP+SS +W++YMAF L    +E+AR++AERAL+TI+ REE EK
Sbjct: 136  TSVRPDNSTAFERLLLSSPDSSLLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEK 195

Query: 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLY 1773
            LNIWVA  NLEN YG P  +++ KVF+RA+QYC+P  V+  L  +Y ++E+ K A+ L  
Sbjct: 196  LNIWVAMLNLENMYGTP--DSLQKVFERAIQYCEPLLVYQQLADIYAKSEKIKEAESLYK 253

Query: 1774 KMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832
             M+K+F+    V+L     LL+Q+Q +   A++QRAL SL   +H+  I++ A LEF+ G
Sbjct: 254  SMVKRFRQDKAVYLSYGTFLLRQRQSDAANALLQRALQSLSSKEHVDLIARFARLEFQFG 313

Query: 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892
             +++ +SMF+ +L+ YPKRTDLWS+++D  ++ G    +R LF+R I LS+  KK+KF F
Sbjct: 314  NSEKAKSMFDKVLTTYPKRTDLWSVFIDLMVKHGSQKEVRELFDRVIHLSVSVKKIKFFF 373

Query: 1893 KKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            K+YLEYEK  G  E I+ VKQKA+EYVES
Sbjct: 374  KRYLEYEKKNGTPETIQVVKQKALEYVES 402


>gi|358399275|gb|EHK48618.1| hypothetical protein TRIATDRAFT_145463 [Trichoderma atroviride IMI
            206040]
          Length = 1793

 Score =  244 bits (624), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 353/1374 (25%), Positives = 568/1374 (41%), Gaps = 179/1374 (13%)

Query: 49   DDVPVFPRGGGHSLTQRERDEIHAEVDA------EFEAVERGLHKKNKKKK----KKTER 98
            DD PVFPRGGG  LT  E+ +I  E  A      EFE   +   KK KK      KKTE+
Sbjct: 65   DDEPVFPRGGGSVLTPLEQKKIQMEAKADAIREEEFETSAKPQKKKVKKSAAKGDKKTEK 124

Query: 99   KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
            KA+E    + SL                  K +  G  + G V ++N+ +L I LP  L 
Sbjct: 125  KADEDTIKIESL----------------NFKRLVKGSLVLGQVTKINKLNLEISLPNNLT 168

Query: 159  GLARAADALDPILDNEIEANEDNL---------------LPTIFHVGQLVSCIVLQLDDD 203
            G A     +   L + +E   D                 L +IF VGQ V   V+   D 
Sbjct: 169  GHASIV-TISEQLTSRLEGGADKESDSDEEESSDESDINLQSIFKVGQYVRAYVVSTSDS 227

Query: 204  KKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP 262
                 GK+KI LSLR S    GL  + V     + A V S+ED G ++  G+P+  GFLP
Sbjct: 228  TASGKGKKKIELSLRPSETNTGLEKDDVVPNSTVMASVVSVEDRGCVMDLGIPNLNGFLP 287

Query: 263  RNNLAENSGID-------VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG-- 313
                  NS ID       ++PG +    V       K V LS   D +    TK L G  
Sbjct: 288  ------NSEIDPLIDHERLQPGAVFLCQVTG-KGAAKTVQLSLMQDKLGS--TKALPGDA 338

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
             +I+  +PG +V+  V      G+    +     T D+ H        + K  Y    KV
Sbjct: 339  TTINTFLPGTLVNILVSENEGRGLGGKIMGAVDATADLIHSGVGPNDADLKAKYKVGSKV 398

Query: 374  NARILFVDPTSR--AVGLTLNPYLL-------------HNRAPPSHVKVGDIYDQSKVVR 418
             ARI+   PT++   +G++L P+++                 P   + +    ++  V  
Sbjct: 399  KARIICNFPTAKDPKLGISLLPHIMSLTRKRQDTKSKTEQPLPIEVMPISSFVEKCTVRH 458

Query: 419  VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEG 475
            V+  +GL +D     +    +V IS V + +V  L +    YK G+  R RI+G+  ++G
Sbjct: 459  VEDNIGLFVDTGVAGLG--GFVHISRVKDGKVDALYETSGPYKVGTVHRGRIVGYNEMDG 516

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPH 530
            L +     S  +       DV  G V+ G++  +        G I++   G+    P  H
Sbjct: 517  LFSISFAKSILDQQYIRVEDVPIGSVINGEIEKLVIKEQGVTGLIIKVAEGITGFVPENH 576

Query: 531  MSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
            +S+  +  P KKF+VG ++  RVL      +++ +T KKTLV S+   + SY E +  + 
Sbjct: 577  LSDIRLQNPEKKFRVGMKVKARVLSTNPLKRQMRLTLKKTLVNSEAPTIKSYDEVSIGMQ 636

Query: 589  THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            T G I K++K+G  V+FY  ++GF P SE+      +P   +  GQV+    +   P +R
Sbjct: 637  TLGTIVKVQKNGAHVQFYGHLKGFLPVSEMSEAYIRDPMEHFRAGQVLSVHALEVDPEAR 696

Query: 649  RINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            R  +S      F +      +D  +KLG +VS  V   T + + V ++     K  +P  
Sbjct: 697  RFIVSCKDPSAFGLDKQTALKD--LKLGDVVSAKVTQKTEDQIFVELVDSQL-KAILPVG 753

Query: 703  HLADHLEHATVMK-SVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLINSAQQ--LPSDAS 757
            HL D            I  G     L+VL+ NE+   + L+ K SL+ ++Q+  L     
Sbjct: 754  HLTDKSSSKNQYAWKRISTGQTLSDLVVLEKNENRRAITLTQKPSLVKASQENKLLKSFH 813

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
                 ++V G+V NI  T  FV+F G L    PR +     +A         +S+   I+
Sbjct: 814  DAKVGAIVQGFVRNITVTAVFVQFAGNLNALLPRGRLPADVQAQPDFGMRKFESIEVKIV 873

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
                E  RI         +  DA       ++E +    +SSK    E    +G   GS 
Sbjct: 874  ATIPELKRI-------LVAPADAP-----LVIESEGNKGKSSKAPAPE----DGLSFGST 917

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG------------ATVESGSVIQAAIL 925
             + KV    D  + V   + S+  G +   Q+                     V++  I+
Sbjct: 918  TKVKVTSVKDTQLNVQLVD-SETQGRLDVSQIFDKWEDILDPKDPLGKFSKTQVLRVKIM 976

Query: 926  DV--AKAERLVDLSLKTVFIDRFREANSNRQAQKK-------KRKREASKDLGVHQTVNA 976
             V  AK  R +  S         R A+S  +   K       + K    +DL V     A
Sbjct: 977  GVHDAKDHRYLPFS--------HRSAHSVLELTSKPSDLGDEEPKPITFEDLKVGDNRIA 1028

Query: 977  IVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTA 1034
             V  V   YL ++L P     I     S D +     +  F  G ++   V ++ + +  
Sbjct: 1029 FVNNVTSQYLWVNLSPNVRGRISIMDASDDLSLLNDLEANFPVGSAIKVRVTSVDAKNK- 1087

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             RL L  ++ + +ET +    K+        ++  +IT++   ++ +K      G +H+ 
Sbjct: 1088 -RLDLSARSPNASETITWASLKQ------NMVLPGKITKVNERQVLVKLSEAVSGPVHLP 1140

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARI--IAKSNKPDMKKSFLWELSIKPS--MLTVSEI 1150
            ++ DD    V+ L   +K G  V   I  +  SNK          LS++PS  M +   +
Sbjct: 1141 DMVDD-YGTVDTL--KYKKGDIVRVSIVDVDASNK-------RIRLSMRPSRIMSSTLPV 1190

Query: 1151 GSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
              K + +   +S G  V G+V  V ++   + +   +    F+  S      L+E++  F
Sbjct: 1191 ADKEISKIAQLSTGDIVRGFVKNVADKGVFVLLGGQVTG--FVKISNLSDRFLKEWKDSF 1248

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
             + + V G V++++     L L L+     + D+  D         I EG IV G + K+
Sbjct: 1249 QVDQLVKGRVIALDAATSQLELSLK---SSVVDE--DYKPPVGYNDIKEGQIVTGVVRKV 1303

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
                  +V+    ++ G  H T++ +  V D    Y EG  VK +VLE+  T R
Sbjct: 1304 EEFGAFIVIDNSANVSGLCHRTQMADNAVKDATKLYKEGDKVKARVLEVDPTKR 1357



 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/284 (39%), Positives = 172/284 (60%), Gaps = 15/284 (5%)

Query: 1647 AAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1704
            A  +R  E DA  P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR +AERA+++
Sbjct: 1491 AQVDRTAELDAHGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREVAERAIKS 1550

Query: 1705 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1764
            INIREE EKLN+WVAY NLE  YG+  +  V  VF+RA QY D ++V+  L  +Y ++E+
Sbjct: 1551 INIREETEKLNVWVAYLNLEVAYGS--KHTVEDVFKRACQYNDEQEVYERLASIYIQSEK 1608

Query: 1765 NKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFI 1821
             K ADEL   M+KKF   +  VW      L   K +    +A++ RA   L  H     +
Sbjct: 1609 LKQADELFEAMLKKFGAKAPSVWTNYAHFLHVTKNEPARARALLPRATQQLDSHNGQNMV 1668

Query: 1822 SQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLF 1875
            S+ A LEF+  NG  +RGR+MFEG+L+ +PK+ D+W+  LD EI +     D   +R +F
Sbjct: 1669 SRFAALEFRSPNGEPERGRTMFEGLLAAFPKKGDIWNQLLDLEIGIASSSADHTAVRDVF 1728

Query: 1876 ERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
            ER   +  L P++ +  F+++  +E+ +  + + + V  KA E+
Sbjct: 1729 ERRTRVKGLKPQQAEKWFRRWAAWEEKLDPKGK-DRVMAKAQEW 1771



 Score = 48.1 bits (113), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 124/303 (40%), Gaps = 42/303 (13%)

Query: 115  ISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNE 174
            +S + P  +  IT  ++   M L G + +VNE+ +++ L   + G     D +D      
Sbjct: 1091 LSARSPNASETITWASLKQNMVLPGKITKVNERQVLVKLSEAVSGPVHLPDMVDDY---- 1146

Query: 175  IEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL--------- 225
                 D L    +  G +V   ++ +D   K     +I LS+R S +             
Sbjct: 1147 --GTVDTLK---YKKGDIVRVSIVDVDASNK-----RIRLSMRPSRIMSSTLPVADKEIS 1196

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL----LLQ 281
             +  +  G ++  +VK++ D G  +  G    TGF+  +NL++    + K       L++
Sbjct: 1197 KIAQLSTGDIVRGFVKNVADKGVFVLLG-GQVTGFVKISNLSDRFLKEWKDSFQVDQLVK 1255

Query: 282  GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG-ISIDLLVPGMMVSTRVQSILENGVMLS 340
            G V ++D     + LS      S  V +D K  +  + +  G +V+  V+ + E G  + 
Sbjct: 1256 GRVIALDAATSQLELS----LKSSVVDEDYKPPVGYNDIKEGQIVTGVVRKVEEFGAFI- 1310

Query: 341  FLTYFTGTVDIFHL-QNTFPTTNWKND----YNQHKKVNARILFVDPTSRAVGLTLNPYL 395
                   + ++  L   T    N   D    Y +  KV AR+L VDPT R +   L P  
Sbjct: 1311 ---VIDNSANVSGLCHRTQMADNAVKDATKLYKEGDKVKARVLEVDPTKRRISFGLKPSF 1367

Query: 396  LHN 398
              +
Sbjct: 1368 FED 1370


>gi|350424715|ref|XP_003493888.1| PREDICTED: protein RRP5 homolog [Bombus impatiens]
          Length = 1529

 Score =  244 bits (623), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 125/310 (40%), Positives = 203/310 (65%), Gaps = 4/310 (1%)

Query: 1613 SQNQGHTDEAKTIDEKNNRHAKKKEKE-EREQEIRAAEERLLEKDAPRTPDEFERLVRSS 1671
            S ++   +E   +  K    A+++E+E ++E+EIR  EE L +   P + D+F+RLV +S
Sbjct: 1217 SDSEDEIEEKPKLKNKKLSAAERREQERQKEREIRQREEALADNLLPNSVDQFDRLVLAS 1276

Query: 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731
            P+SS +W++YMA+ L   ++EKAR++A RA++TIN REENEKLN+W A+ NLE++YG P 
Sbjct: 1277 PDSSIIWLQYMAYHLQTTEIEKARAVARRAVKTINFREENEKLNVWNAWLNLESKYGIP- 1335

Query: 1732 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1791
             E++  VFQ A++  D  K++  +L ++    +    ++ +  MI KFKH  +VW    +
Sbjct: 1336 -ESLNDVFQEAVRSNDSLKIYNHMLTVHVEAGRQIELEKTINTMIGKFKHIPEVWFNCGE 1394

Query: 1792 RLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850
             L+K   ++  + ++QRAL SLP  +H+  + + AI+E K G  +R +++FE ILS YPK
Sbjct: 1395 ALVKMGLKDKSRHIMQRALQSLPASEHVNLMVRFAIMENKFGDKERAQTLFEQILSSYPK 1454

Query: 1851 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1910
            R D+WS Y+D  ++  D+D+ R + ERA+   LPP+KMK L+KK++  E+  G +E +  
Sbjct: 1455 RVDIWSCYVDSLVKSNDIDIARKVLERAVLQVLPPRKMKILYKKFINLEEQHGTQEDVIR 1514

Query: 1911 VKQKAMEYVE 1920
            V+Q A+EYVE
Sbjct: 1515 VQQMAVEYVE 1524



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 170/685 (24%), Positives = 307/685 (44%), Gaps = 66/685 (9%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG     ++  D +       F+  E+   +  +K++ K + K              
Sbjct: 146 FPRGGKEVQKRKPSDLL-------FDKYEKIGKRNCEKQRAKKQDK-------------- 184

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPI 170
           G    +P  A +++   IS G+ + G + EV   DL+I LPGGL G A+  D       +
Sbjct: 185 GEPNFIPNTAERLSYATISEGLVVLGCIYEVTNYDLLISLPGGLVGRAQITDISECYTNL 244

Query: 171 LDNEIEA-----NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIW---LSLRLSLLY 222
           L + +++     NE   L  ++  G  V C V       K I  ++ W   +SL  SL+ 
Sbjct: 245 LQSLVKSQDSLTNELKSLSELYTYGDYVVCYV-------KAIQPQETWQISISLEPSLIN 297

Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG 282
           + L +  +  G  +   + SIEDHGY++  GL +   F+     + N     K  L    
Sbjct: 298 QSLDVTYLDSGSKIVCTISSIEDHGYVVDTGLINVRAFISTKE-SGNKKCLCKQLLCYVK 356

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            V++ + T  ++    +    + C T ++K  S+D L+PG   +  ++ +L NG+ +S  
Sbjct: 357 EVKTNENTSTIILTLKEKLVKAICET-EIK--SLDSLMPGTKFNLSIKKVLSNGLCVSLD 413

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP 402
               G ++  +L    P + + N+     K+   +L++ PT +    +    +  NR   
Sbjct: 414 ENNIGFINQTYLDE--PLSKYSNNL----KITGTLLYILPTIKFAYFS--STIDKNR--D 463

Query: 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
             +K GD+  ++ V+  + G G++L +  + +    +V+    + E    +EK +  G+ 
Sbjct: 464 YTIKPGDVVKEATVLFRESG-GIVLQLAKSGIR--GFVSFKRTSVEYDTIIEK-FAPGTT 519

Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GG 521
            + RIL +  L+G+    ++ S  E   F+ SD KPG VV  K+  +D     +    G 
Sbjct: 520 HKCRILSYSWLDGIYICTMQRSLLEQKYFSLSDFKPGDVVNVKITNIDKVNGFINVQHGK 579

Query: 522 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSS 579
                   H+S+ E +   KK KV  E+  RVL V    KRI +T K++L+ S L IL++
Sbjct: 580 FNGQIAPDHISD-EGLSALKKLKVDEEVEARVLSVHIDRKRIYLTLKRSLITSDLPILAN 638

Query: 580 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 639
             +A      H  I +I K G  V+F+  V+G+ P + L +      +  Y +GQ +  +
Sbjct: 639 IQDAKIDAKHHATIIQIHKRGILVKFFGDVKGWIPHTALDMLTS-NVNWNYSIGQTISVK 697

Query: 640 IMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI---AKGYSK 696
           I +    S  I L+   +  +V E+    +G  V G +   +   + + +     +  S 
Sbjct: 698 IQTVNTDSGEITLNVANQDIQV-EEATFDIGEEVEGTIIESSTQGLYLRICRNEGQTVST 756

Query: 697 GTIPTEHLADHLEHATVMKSVIKPG 721
           G +P  H++  +E A ++ S   PG
Sbjct: 757 GFLPAGHMSPCMEIAALLASKYVPG 781



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 22/241 (9%)

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
           V +   ++ FAP    G    C   S   +  +  C +  S+   +  +LS   KP  V 
Sbjct: 505 VEYDTIIEKFAP----GTTHKCRILSYSWLDGIYICTMQRSLLEQKYFSLS-DFKPGDVV 559

Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
              +  +   V+G ++V             G   G I  +H++D  E  + +K  +K   
Sbjct: 560 NVKITNIDK-VNGFINV-----------QHGKFNGQIAPDHISD--EGLSALKK-LKVDE 604

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           E + ++L +  +   + L+ K SLI S   + ++      ++  H  +  I + G  V+F
Sbjct: 605 EVEARVLSVHIDRKRIYLTLKRSLITSDLPILANIQDAKIDAKHHATIIQIHKRGILVKF 664

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            G + G+ P + A+D   ++++  Y +GQ++   I  VN+++G ITL++        +A+
Sbjct: 665 FGDVKGWIPHT-ALDMLTSNVNWNYSIGQTISVKIQTVNTDSGEITLNVANQDIQVEEAT 723

Query: 842 F 842
           F
Sbjct: 724 F 724


>gi|400596283|gb|EJP64059.1| S1 RNA binding domain-containing protein [Beauveria bassiana ARSEF
            2860]
          Length = 1796

 Score =  243 bits (621), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 346/1413 (24%), Positives = 602/1413 (42%), Gaps = 120/1413 (8%)

Query: 11   KSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEI 70
            KS+K   + N    ++ K  K +  DA +   +++  D++ P+FPRGG   LT  E+ +I
Sbjct: 17   KSAKQSKEANPTKTDKPKTGKPKDADAPKKAVVSVLKDEE-PLFPRGGASVLTPLEQKQI 75

Query: 71   HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKN 130
              E  A+  A E       K +KKK    A +  D       +  S K+      +  K 
Sbjct: 76   QLEAKAD-AAQEDEFSTAGKPQKKKKRAAALQKSDKKSESKSEDDSVKI----ESLNFKK 130

Query: 131  ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLL------- 183
            +  G  + G +  ++   L + LP  L G      A+   L N ++ +  +         
Sbjct: 131  LVKGSIVLGQITRISNLALEVALPNNLTGHVSIV-AVSEQLTNRLQGDVKDDDSDDEEKE 189

Query: 184  ----------PTIFHVGQLVSCIVLQLDDDK-KEIGKRKIWLSLRLSLLYKGLSLETVQE 232
                       TIF +GQ V   V+   +      GKRKI LSLR +    GL+ + V  
Sbjct: 190  DDDEGEDVDPKTIFEIGQFVRAYVVSTTEGAVAGKGKRKIELSLRPTEANTGLTKDDVVP 249

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTR 291
               + A V S+EDHG I+  G+   +GFLP   +  N     ++ G +    V +   + 
Sbjct: 250  QCTVVAAVASVEDHGCIMDLGIDGLSGFLPNAEVDTNMKRQRLQEGAVFLCQVTAKKGSG 309

Query: 292  KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 351
            KV  L+   D +        +  +I+  +PG  VS  V     +G+    + +   T D+
Sbjct: 310  KVAQLTLKQDKIGNVKNYPAEATTINTFLPGTAVSVLVTGNSNSGLSGKIMGHVDATADL 369

Query: 352  FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA--VGLTLNPYLL-----HNRAP--- 401
             H       T+ ++ Y    K+ ARI+   PT+++  +G+TL P+L      H   P   
Sbjct: 370  IHSGIGPFGTDVESKYKIGSKIKARIICNFPTAKSPKLGITLLPHLTALTKKHPEGPKRS 429

Query: 402  --PSHV-KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK-- 456
              P  V  +  I +Q  V   +  +GL +D+    +    +V IS V + +V  L K   
Sbjct: 430  SLPLQVLPIASIVEQCTVRHAEADMGLFVDVGVPGLC--GFVHISRVKDGKVDSLYKSSG 487

Query: 457  -YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDS 511
             Y+ GS  + RI+G+  ++G+     + S        H DV  G V+  ++    I  D 
Sbjct: 488  PYQVGSTHKGRIVGYSEIDGVFHLSFQKSILSQTYIRHEDVPVGTVLTCEIEKLLINEDG 547

Query: 512  F-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKT 568
              G ++    G+    P  H+S+ ++  P KKF+ G ++  RVL   +  K I +T KKT
Sbjct: 548  VNGLVLNIAEGITGFVPERHLSDVKLQHPEKKFRQGMKIKARVLSNDLIKKSIRLTLKKT 607

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV S+  I+++Y +        G I K+E+ G  ++FY  ++GF P SE+      +PS 
Sbjct: 608  LVNSETPIITNYDDVKVGSQALGTIIKLERSGARIQFYGELRGFLPISEMSEAYIRDPSE 667

Query: 629  MYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSEDDLVKLGSLVSGVVDVVTP 682
             + VGQVV   ++   P SRR+ +S      F ++     +   + LG +VS  V   T 
Sbjct: 668  HFRVGQVVSVHVLDVDPESRRLVVSCKDPGAFGLEKQNALKK--LSLGDVVSAKVTQKTE 725

Query: 683  NAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEFDQLLVLDNESS--NLL 738
            + V V  +     K  +P  HL D    ++   +K V   G     L+VLD      +++
Sbjct: 726  DQVFVE-LEGSLLKAILPVGHLTDKSASKNQFALKKV-SAGQTLPNLVVLDKHEGRRSVI 783

Query: 739  LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
            LS K SL+ +A++  L          SV  G+V NI  T  FV+F G L    P+++   
Sbjct: 784  LSQKPSLVEAAKEGKLLKSFEQAKQGSVFAGFVRNITLTAVFVQFAGSLHALLPKARLAP 843

Query: 797  GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC-SSTDASFMQEHFLLEEKIAM 855
              +A      +   S+   ++    +  RI ++   +           +      + +A 
Sbjct: 844  EAQAKPDFGLHKNDSIEVRVVSTIPDLSRIMVAPSSAPVDQDVAGKSKKAKAAPADDLAF 903

Query: 856  LQSSKHNGSELKWVE--GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT 913
               +K   + +K  +    I+   ++G++  SN F          D +  I   +   AT
Sbjct: 904  GSITKAKVTSIKETQLNVQIVDYNVQGRIDISNVF----------DKWDDIADPKHPLAT 953

Query: 914  VESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKD-LGV 970
               G  ++  ++ V  AK  R + +S ++       E  + +   +  R +E + D L V
Sbjct: 954  FHKGQELRVRVVGVHDAKDHRFLPISHRSAH--SILELTARQTDLETDRLKELTVDSLKV 1011

Query: 971  HQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMAL 1028
             Q+  A V  + + YL ++L P     I     SD  +Q    +  F  G ++   V ++
Sbjct: 1012 GQSHIAFVNNLTQQYLWVNLSPSVRGRISALEASDDLSQLNDLEGNFPAGSALRVRVTSV 1071

Query: 1029 -PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGF 1087
             P +S      L L A     +SSSK      S     ++  +IT++   ++ +KF    
Sbjct: 1072 NPENSH-----LDLSA----RSSSSKDTVTWDSIKANMVLPGKITKVNERQILVKFSESV 1122

Query: 1088 HGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI--IAKSNKPDMKKSFLWELSIKPS-- 1143
             G +H+ ++ D   N  E   + ++ G  +   +  + KSNK          LSI+PS  
Sbjct: 1123 SGPVHLPDMAD---NFDEVNTTQYRKGGIIRVSVVDVDKSNK-------RLRLSIRPSRI 1172

Query: 1144 MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSEL 1203
            M +   I  + +     +S G  V G+V  V ++   + +   + A + I  S      L
Sbjct: 1173 MSSTLPIKDQEISSFAQLSSGDIVRGFVKNVTDKGLFVLLGGPVSALVKI--SNLSDRYL 1230

Query: 1204 QEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIV 1263
            +E++ +F I + V G +++I+   K L + L+     + D+  D +       +  G +V
Sbjct: 1231 KEWKDQFQIDQMVKGRIIAIDNATKQLEMSLK---SSVVDE--DYTPPVTYKDLAVGQVV 1285

Query: 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTV 1323
             G++ K+      ++V    ++ G  H +++    V D    Y EG  VK  VLE+    
Sbjct: 1286 TGKVRKVEEFGAFILVDNSANVSGLCHRSQIAEKPVQDATKLYKEGDAVKAMVLEVDVQK 1345

Query: 1324 RG-TFHVELSLRSSLD-GMSSTNSSDLSTDVDT 1354
            R  +F ++ SL    D  M S N + L    D+
Sbjct: 1346 RKISFGLKPSLFEDEDTDMESDNGAALDGQDDS 1378



 Score =  184 bits (466), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 169/293 (57%), Gaps = 18/293 (6%)

Query: 1644 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            EI   +   L+ + P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR +AERA++
Sbjct: 1489 EIEVDKTAELDTNGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREVAERAIR 1548

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
            TINIREE EKLN+WVAY NLE  YG   +  V +VF+RA QY DP+++H  L  +Y ++ 
Sbjct: 1549 TINIREETEKLNVWVAYLNLEVAYGT--KTTVEEVFKRACQYNDPQEIHERLASIYIQSG 1606

Query: 1764 QNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKF 1820
            + K A+ L   M+KKF   +  VW+     L   +      +A++ RA   L   + +  
Sbjct: 1607 KLKEAEALFEAMVKKFGAKAPSVWMNYAHFLHVTRNDPARARALLPRASQQLGAAQAVTI 1666

Query: 1821 ISQTAILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL---------GDVD 1869
            + + A LEF   NG  +RGR+MF G+L  +PK+ DLW+  LD E+ +          D  
Sbjct: 1667 VPRFAALEFHSPNGEPERGRTMFAGLLDTWPKKGDLWNQLLDLEMGILAGAGGTAAADPT 1726

Query: 1870 LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
             +R +FER   +  L P++ +  F+++  +E+ +  + + + V  KA E+  +
Sbjct: 1727 AVRDVFERRTRVKGLKPQQAEKWFRRWTTFEEGIDAKSKAK-VTAKAHEWAAA 1778


>gi|344303010|gb|EGW33284.1| hypothetical protein SPAPADRAFT_137651 [Spathaspora passalidarum NRRL
            Y-27907]
          Length = 1671

 Score =  242 bits (617), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/272 (44%), Positives = 177/272 (65%), Gaps = 4/272 (1%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++VEKAR I ERAL TIN REE E
Sbjct: 1399 LNTRAPQSVGDFERLLIGNPNSSIMWMNYMSFQLQLSEVEKAREIGERALNTINYREEQE 1458

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            K+NIW+A  NLEN +G+  +E +   F+RA QY D   +H  L+ +Y  +E+   ADEL 
Sbjct: 1459 KMNIWIALLNLENTFGS--DETLESTFKRACQYMDSFTMHQKLVAIYTMSEKYDQADELY 1516

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
              M KKF  +   W+     LL +   +  + V+ +AL  LP+  HI+ + + A LEF  
Sbjct: 1517 KVMTKKFGKNISTWVHYGSYLLDRDLHDQTREVLAKALQVLPKRDHIEVVRKFAQLEFVK 1576

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-DLIRGLFERAISLSLPPKKMKF 1890
            G  ++GRS+FEG++S+ PKR DLW++Y+DQEI+  D  D +  LFER ++  L  K+ KF
Sbjct: 1577 GDPEQGRSLFEGLISDAPKRIDLWNVYIDQEIKQDDSKDKVEDLFERVVTKKLSRKQAKF 1636

Query: 1891 LFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922
             FKK+LE+E+  G+E+ +  VK KA EYV+++
Sbjct: 1637 FFKKWLEFEEDKGDEKMVARVKSKAAEYVQNS 1668



 Score =  201 bits (511), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 286/1120 (25%), Positives = 485/1120 (43%), Gaps = 178/1120 (15%)

Query: 496  VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
            ++PGM+V   +  V   G IV+  G V     L H+ EF + K    + VG+++  RVL 
Sbjct: 296  IQPGMIVDALIGEVTKNGLIVKVFGLVDGSISLAHLREFSLDKLKHNYSVGSKVKARVLA 355

Query: 556  VKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGW----ITKIEKHGCFVR--- 604
            V  K      K+ ++     +L    E TD L    + H      I   + +  +V+   
Sbjct: 356  VLLKNGV---KRLILSLAHHVLKLEPEETDALEAFPVGHKLDEVEIVGKDDNYMYVKLST 412

Query: 605  FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRV 661
            FY  +      S++  D   E    Y +G   K R++        + ++F   ++    +
Sbjct: 413  FYGQIH----NSKIDSDKNLEID--YTIGSKHKSRVIGYNSVDDLLIMTFESSLINSEYL 466

Query: 662  SEDDLVKLGSLV-SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
            +  D + LG+ + S  +  V P +  + V      +G +PT  ++D          ++ P
Sbjct: 467  NASD-IPLGTYIPSCEILKVLPESGGIQVKFFDKFEGFVPTNQMSDI--------KLVYP 517

Query: 721  GYEFD-----QLLVLDNESSNLLLSAKYSLINSAQ-----QLPSDASHIHPNSVVHGYVC 770
              +F      +  V+  +   +L++ + +L+N        +          N++V  +V 
Sbjct: 518  ERKFRVGTKVKGRVIGQQGKTVLITLRKALVNLENDEILSKFEDAKIGFKTNAIVEKFVH 577

Query: 771  NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            N    G  V F G+L  F P+++  +           +GQ V + ILD+N+ET R+ ++L
Sbjct: 578  N----GAIVSFFGKLKAFLPKNEISETFVERAQDHLKLGQIVSTRILDINTETERLLVTL 633

Query: 831  KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGV 890
            KQ    +TD               + Q+ K   +EL  V G    S+    V E     +
Sbjct: 634  KQ----ATD---------------LFQAQKATIAEL--VPG---KSIANAFVVEKAKNSI 669

Query: 891  VVSFEEHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKT 940
            ++   E+ ++ G I   QL     E           GS ++  ILD     R V  + K 
Sbjct: 670  LIEL-ENENLRGVIYDGQLTDGNYEQNRAAVKQLEIGSKLEVLILDKDLRARTVIATGKR 728

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIV----KENYLVLSLPEYNHS 996
              I+  R   SN+     +   E     G  ++V      V    K   LVL+       
Sbjct: 729  SLIEAVR---SNQFPTTFEEVSEGKLVKGYIKSVTNFGLFVSFAGKLTGLVLA------- 778

Query: 997  IGYA-SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS---- 1051
              YA  VSD +      K+F   QSV   V+ L   +   R LL L    E ++      
Sbjct: 779  -KYAGDVSDLS------KKFYKHQSVSCRVIRLDQENK--RFLLSLNTNGEVDSDEVINP 829

Query: 1052 -SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLF 1108
                 K  + Y  G L +A I  +K  +L ++      GR+ IT+  +    + +     
Sbjct: 830  VDTSKKLLTEYVPGILTKAIIKSVKGTQLNVQLADNLQGRVDITQCFNSWDEIKDKHQPL 889

Query: 1109 SNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLT-VSEIGSKLLFE 1157
            S F  G  +  +II   +  + K          KS + ELSIK +  T  +++  KL   
Sbjct: 890  SQFHKGDILDVKIIGYHDAKNHKFLPVTHRTYGKSTILELSIKDTTETPFTDL--KL--- 944

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
              DV  G  + G+V  + N    ++I+  +K  +  +    + +   +   +  IG A+ 
Sbjct: 945  -SDVKTGTEIFGFVNNIHNGLVWVSITPSVKGHVSFMHLTDDVTVFSDIDNKLPIGCALE 1003

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              V  ++ E  +L +       G + + V   ND     I  G     R+ K+      +
Sbjct: 1004 LKVDEVDNEHHVLVM------SGKNSQGVKTFND-----ITVGKKYPVRVIKVKDAY--V 1050

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSG-YDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            +V+IGP++    + T+  N   SD L   +    +V   V++I    +    V +SLR+ 
Sbjct: 1051 LVEIGPNIIASAYITDALN-NYSDKLEDVFHPSDYVIASVVDIDTDAK---KVAVSLRND 1106

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
                            D   K +  I DLS   IV+G+VKN+ + G ++ L R + A V 
Sbjct: 1107 ----------------DAVDKTINSIADLSRGDIVKGFVKNIANNGVYVALGRSVYALVR 1150

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL---S 1453
            +++LSD Y++  +K F  G+LV G+V + +    RV +TLK S+       E+N L    
Sbjct: 1151 ITDLSDSYLKDWKKFFKPGQLVLGKVSACKE-EGRVLLTLKESE----VNGELNYLKKFE 1205

Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
            +L VGD+  G +KRV  +G+F+ ++ T N+ GLCH SE++E+ V+NI  ++  G++VKVK
Sbjct: 1206 DLEVGDVFEGSVKRVTDFGVFVKLDGTVNISGLCHQSEIAENKVENIAGLFGEGDRVKVK 1265

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1552
            ILKV++EK+++SLGMK+SYF   +D       E+ DE IE
Sbjct: 1266 ILKVNQEKKQLSLGMKASYFTTASD-----VNEDDDEDIE 1300



 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 196/825 (23%), Positives = 357/825 (43%), Gaps = 76/825 (9%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG  +LT  E  EI  E   D  FE        K      + + K  +      +  
Sbjct: 19  FPRGGATALTPLEVKEISNEATKDVLFEQ-----STKRSSSSAEPQPKRQKKTKKKSTKS 73

Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL 171
            +    +        T KN+  G  + G + ++ + D+ + L   L G      ++ P++
Sbjct: 74  TEAEDEEKVETVEIFTFKNLIPGTLVLGQIQKIGKFDITLALGDNLVGYVPIT-SISPLI 132

Query: 172 DNEIEANEDNL--------------------LPTIFHVGQLVSCIVLQLDDDKKEIGKRK 211
              IE  E                       L  IF VG  +   V    D++K    ++
Sbjct: 133 TKTIEELEKEDQSDESDDEQEEEEKSKEFPELSAIFKVGSWLKAKVATQKDERK----KR 188

Query: 212 IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSG 271
           I  ++   ++ + +  E    G +L   V S+EDHG I+  G P  +GF+    L  N  
Sbjct: 189 IEFTIEPEVVNELIEDEDFVSGNLLQCSVVSVEDHGIIVDTGKPKISGFISNKELT-NGK 247

Query: 272 ID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328
           I+   VKPGL++   + S  + R V    ++  T        +   S+D + PGM+V   
Sbjct: 248 IEIGSVKPGLVILASIVSQPKGRTVTLRPANVTTKKPISVTTIS--SVDAIQPGMIVDAL 305

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSR 385
           +  + +NG+++       G++ + HL+  F     K++Y+   KV AR+L V   +   R
Sbjct: 306 IGEVTKNGLIVKVFGLVDGSISLAHLRE-FSLDKLKHNYSVGSKVKARVLAVLLKNGVKR 364

Query: 386 AVGLTLNPYLLHNRAPPSHVK------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
            + L+L  ++L  +  P          VG   D+ ++V  D     +       +ST  Y
Sbjct: 365 LI-LSLAHHVL--KLEPEETDALEAFPVGHKLDEVEIVGKDDNYMYV------KLST-FY 414

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
             I +   +  + LE  Y  GS  + R++G+  ++ L     ++S         SD+  G
Sbjct: 415 GQIHNSKIDSDKNLEIDYTIGSKHKSRVIGYNSVDDLLIMTFESSLINSEYLNASDIPLG 474

Query: 500 MVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
             +   +++ V  +S G  V+F    +   P   MS+ ++V P +KF+VG ++  RV+G 
Sbjct: 475 TYIPSCEILKVLPESGGIQVKFFDKFEGFVPTNQMSDIKLVYPERKFRVGTKVKGRVIGQ 534

Query: 557 KSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           + K + +T +K LV      ILS + +A     T+  + K   +G  V F+  ++ F P+
Sbjct: 535 QGKTVLITLRKALVNLENDEILSKFEDAKIGFKTNAIVEKFVHNGAIVSFFGKLKAFLPK 594

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-----MMKPTRVSEDDLVKLG 670
           +E+             +GQ+V  RI+     + R+ ++      + +  + +  +LV   
Sbjct: 595 NEISETFVERAQDHLKLGQIVSTRILDINTETERLLVTLKQATDLFQAQKATIAELVPGK 654

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV 729
           S+ +  V     N++++ +  +   +G I    L D + E        ++ G +  ++L+
Sbjct: 655 SIANAFVVEKAKNSILIELENENL-RGVIYDGQLTDGNYEQNRAAVKQLEIGSKL-EVLI 712

Query: 730 LDNE--SSNLLLSAKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           LD +  +  ++ + K SLI +  + Q P+    +    +V GY+ ++   G FV F G+L
Sbjct: 713 LDKDLRARTVIATGKRSLIEAVRSNQFPTTFEEVSEGKLVKGYIKSVTNFGLFVSFAGKL 772

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           TG      A  G  +DLSK +Y  QSV   ++ ++ E  R  LSL
Sbjct: 773 TGLVLAKYA--GDVSDLSKKFYKHQSVSCRVIRLDQENKRFLLSL 815



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 153/711 (21%), Positives = 284/711 (39%), Gaps = 95/711 (13%)

Query: 864  SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGS----- 918
            +EL   E F+ G++++  V    D G++V       + GFI++ +L    +E GS     
Sbjct: 199  NELIEDEDFVSGNLLQCSVVSVEDHGIIVD-TGKPKISGFISNKELTNGKIEIGSVKPGL 257

Query: 919  VIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
            VI A+I+   K  R V L          R AN   +         +   +     V+A++
Sbjct: 258  VILASIVSQPKG-RTVTL----------RPANVTTKKPISVTTISSVDAIQPGMIVDALI 306

Query: 979  -EIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
             E+ K   +V      + SI  A + +++  K  +  +  G  V A V+A+   +   RL
Sbjct: 307  GEVTKNGLIVKVFGLVDGSISLAHLREFSLDKL-KHNYSVGSKVKARVLAVLLKNGVKRL 365

Query: 1038 LLLLK----AISETETSSSKRAKKKSSYDVG-SLVQAEITEIKPLELRLKFGIGFHGRIH 1092
            +L L      +   ET + +      ++ VG  L + EI       + +K    F+G+IH
Sbjct: 366  ILSLAHHVLKLEPEETDALE------AFPVGHKLDEVEIVGKDDNYMYVKLST-FYGQIH 418

Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
             ++++ DK     NL  ++ IG    +R+I  ++  D+         I    L  S+I  
Sbjct: 419  NSKIDSDK-----NLEIDYTIGSKHKSRVIGYNSVDDLLIMTFESSLINSEYLNASDIPL 473

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
                  C+          + KV  E   + +    K + F+  +     +L   +R+F +
Sbjct: 474  GTYIPSCE----------ILKVLPESGGIQVKFFDKFEGFVPTNQMSDIKLVYPERKFRV 523

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
            G  V G V  I ++ K + + LR          V++ ND + +   +  I G + + I+ 
Sbjct: 524  GTKVKGRV--IGQQGKTVLITLRK-------ALVNLENDEILSKFEDAKI-GFKTNAIVE 573

Query: 1273 GV--GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                 G +V     L   +   E+    V         GQ V  ++L+I+     T  + 
Sbjct: 574  KFVHNGAIVSFFGKLKAFLPKNEISETFVERAQDHLKLGQIVSTRILDINTE---TERLL 630

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML-SR 1389
            ++L+ + D   +  ++        PGK            I   +V         I L + 
Sbjct: 631  VTLKQATDLFQAQKATIAEL---VPGKS-----------IANAFVVEKAKNSILIELENE 676

Query: 1390 KLDAKVLLSNLSDGYVE---SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1446
             L   +    L+DG  E   +  K+  IG  +   +L  +  ++ V  T K S       
Sbjct: 677  NLRGVIYDGQLTDGNYEQNRAAVKQLEIGSKLEVLILDKDLRARTVIATGKRSLIEAVRS 736

Query: 1447 SEI-NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1505
            ++       +  G +V G IK V ++GLF++     L GL  +++ + D  D  +  Y+ 
Sbjct: 737  NQFPTTFEEVSEGKLVKGYIKSVTNFGLFVSFAG-KLTGLV-LAKYAGDVSDLSKKFYKH 794

Query: 1506 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGS 1556
             + V  +++++D+E +R  L            +L  + E +SDE I  V +
Sbjct: 795  -QSVSCRVIRLDQENKRFLL------------SLNTNGEVDSDEVINPVDT 832


>gi|340518409|gb|EGR48650.1| hypothetical protein TRIREDRAFT_78062 [Trichoderma reesei QM6a]
          Length = 1799

 Score =  241 bits (616), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 344/1367 (25%), Positives = 565/1367 (41%), Gaps = 164/1367 (11%)

Query: 49   DDVPVFPRGGGHSLTQRERDEIHAEVDAEF---EAVERGLHKKNKKKKKK-------TER 98
            D+ PVFPRGGG  LT  E+ +I  E  A+    E  E G   + KK KK        TE+
Sbjct: 65   DEEPVFPRGGGSVLTPLEQKKIQMEAKADAIREEEFETGAKSQKKKAKKAAVKSDKKTEK 124

Query: 99   KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
            KA E    + SL                  K +  G  + G V  +N+  + + LP  L 
Sbjct: 125  KAEEDSIRIESL----------------NFKRLVRGSLVLGQVMRINKLSVEVSLPNNLM 168

Query: 159  GLARAADALDPILDNEIEANE---------------DNLLPTIFHVGQLVSCIVLQLDDD 203
            G A    A+   L + +E                  D  L ++F VGQ V   VL   D 
Sbjct: 169  GHASIV-AISSQLTSRLEGGATEEGDSEEDESSDETDVNLKSMFKVGQYVRAYVLSTKDT 227

Query: 204  KKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP 262
                 GKR+I LSLR +    GL  + V     + A V S+E+ G ++  G+P   GFLP
Sbjct: 228  ATGGKGKRRIELSLRPNEANSGLETDDVVPNSTVMASVVSVEERGCVMDLGMPGLNGFLP 287

Query: 263  RNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL 319
               +  +  ID   ++PG +    V     + K+  L+   D V           +I+  
Sbjct: 288  NGEI--DPLIDQERLQPGAVFLCQVTG-KGSNKIAQLTLKQDKVGSTKAFPADATTINTF 344

Query: 320  VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
            +PG +VS  V      G+    +     T D+ H        + K+ Y    KV ARI+ 
Sbjct: 345  LPGTLVSVLVSDNEGRGLAGKIMGTLDATADLIHSGIGPNNVDLKSKYKVGSKVKARIIC 404

Query: 380  VDPTSR--AVGLTLNPYLLH------------NRAPPSHVKVGDIYDQSKVVRVDRGLGL 425
              PT++   VG++L P++L              + P   + +    ++  V  V+  +GL
Sbjct: 405  NFPTAKDPKVGVSLLPHILSLTQKRQDADTEVTKRPLEVLPISSFVEKCTVRHVEADIGL 464

Query: 426  LLD--IPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGI 480
             +D  IP        +V IS V + +V  L +    YK G+  R R++G+  ++GL +  
Sbjct: 465  FVDTGIP----GLGGFVHISRVKDGKVDALYESSGPYKVGTVHRGRVVGYNEMDGLFSIS 520

Query: 481  LKASAFEGLVFTHSDVKPGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPHMSEFE 535
             + S  E       DV  G VV G++  +        G I++   G+       HMS+  
Sbjct: 521  FEKSLLEQQYIRLEDVPIGSVVNGEIEKLVIKEQGVTGLIIKIADGMSGFVSENHMSDIR 580

Query: 536  IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
            +  P KKF+ G ++  RVL +   R  + +T KKTLV S+  ++ SY + +  + T G I
Sbjct: 581  LQHPEKKFREGMKVKARVLSLNFSRRQLRLTLKKTLVNSEAPVIKSYDDVSIGMKTLGTI 640

Query: 594  TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
             K++ +G  ++FY  ++GF P SE+      +P+  + VGQVV    +   P ++R  +S
Sbjct: 641  VKVQPNGAHIQFYGRLRGFLPVSEMSEAYIRDPTEHFRVGQVVSVHALEVDPEAKRFIVS 700

Query: 654  F-------MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
                    + K T +     + +G +VS  V   T + + V ++     K  +P  HL D
Sbjct: 701  CKDPGAFGLEKQTALKN---LNVGDIVSAKVTQKTEDQIFVELVDSQL-KAILPVGHLTD 756

Query: 707  HLEHATVMK-SVIKPGYEFDQLLVLDNESSN--LLLSAKYSLINSAQQ--LPSDASHIHP 761
                        I  G     L+VL+   +   ++LS K SL+ +AQ   L         
Sbjct: 757  KSSSKNQYAWKRISAGQTLSNLMVLEKYENRRAIILSQKPSLVKAAQDKTLLKSFEDAKV 816

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQ-RADLSKTYYVGQSVRSNILDV 819
             +VV G+V NI  T  FV+F   L    P+ +   D Q + D     Y  +S+   I+  
Sbjct: 817  GAVVQGFVRNITVTAVFVQFAANLHALLPKGRLPADAQSQPDFGLRKY--ESIEVRIIST 874

Query: 820  NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
              E  RI         +  DA  ++      +      +           +G   GS  +
Sbjct: 875  IPEMKRI-------LVAPADAPVVEPENKKSKSSTKTSAPAPE-------DGLAFGSTAQ 920

Query: 880  GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA------------TVESGSVIQAAILDV 927
             K+    D  + V   + SDV G I   Q+                     V++  +L V
Sbjct: 921  AKITSIKDTQLNVQLVD-SDVQGRIDVSQIYDKWEDIPDPKDPLDKFNKKQVLRVKVLGV 979

Query: 928  --AKAERLVDLSLK---TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVK 982
              AK  R +  S +   +V     + ++ +  A K     E    L V  T  A V  V 
Sbjct: 980  HDAKDHRFLPFSHRSAHSVLELTCKPSHLSSDAPKPISLEE----LKVGDTHIAFVNNVT 1035

Query: 983  ENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLL 1040
              YL ++L P     I     S D +     +  F  G ++ A V A+   +   RL L 
Sbjct: 1036 SQYLWVNLSPNVRGRISIMDASDDLSLLNDLEANFPVGSALKARVTAVDPQNN--RLDLS 1093

Query: 1041 LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
             ++ + +E  +    K+  +      +  +IT++   ++ +K      G +H+ ++ DD 
Sbjct: 1094 ARSANASEAITWTSLKQNMT------LPGKITKVNERQVLVKLSESVSGPVHLPDMADDY 1147

Query: 1101 SNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPS--MLTVSEIGSKLLFEE 1158
            S V     S +K G  V   I+     P  K+     LS++PS  M + S +  K + + 
Sbjct: 1148 STVDT---SKYKKGDIVRVSIV--DVDPSNKR---IRLSMRPSRIMSSTSPVVDKEITKI 1199

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
              ++ G  V G+V  V ++   + +   + A  F+  S      L+E++  F I + V G
Sbjct: 1200 TQLATGDIVRGFVKNVADKGLFVLLGGQVTA--FVKISNLSDRFLKEWKDGFQIDQLVKG 1257

Query: 1219 HVLSINKEKKLLRLVLR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
             V++++     L L L+    D   D T  +S ++    I EG IV G + K+      +
Sbjct: 1258 RVIALDAATNQLELSLKSSVVD--EDYTPPLSYND----IKEGQIVTGVVRKVEEFGAFI 1311

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
            +V    ++ G  H +++ +  V D    Y EG  VK +VLE+  T R
Sbjct: 1312 LVDNSANVSGLCHRSQMADNPVKDATKLYKEGDKVKARVLEVDATKR 1358



 Score =  196 bits (497), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/287 (39%), Positives = 174/287 (60%), Gaps = 15/287 (5%)

Query: 1647 AAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1704
            A  +R  E DA  P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR IAERA+++
Sbjct: 1495 AQVDRTAELDAHGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREIAERAIKS 1554

Query: 1705 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1764
            INIREE EKLN+WVAY NLE  YG+  ++ V  VF+RA QY D ++V+  L  +Y ++E+
Sbjct: 1555 INIREETEKLNVWVAYLNLEVAYGS--KQTVEDVFKRACQYNDEQEVYERLASIYIQSEK 1612

Query: 1765 NKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFI 1821
             K ADEL   M+KKF   S  VW      L   K +    +A++ RA   L  H     +
Sbjct: 1613 LKEADELFEAMLKKFGAKSPSVWTNYAHFLHVTKNEPARARALLPRATQQLDSHNGQNIV 1672

Query: 1822 SQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLF 1875
            S+ A LEF+  NG  +RGR+MFEG+L+ +PK+ DLW+  LD EI +     D   +R +F
Sbjct: 1673 SRFAALEFRSPNGEPERGRTMFEGLLAAWPKKGDLWNQLLDLEIGIASSSADYTAVRDVF 1732

Query: 1876 ERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            ER   +  L P++ +  F+++  +E+ +  + + + V  KA E+  +
Sbjct: 1733 ERRTRVKGLKPQQAEKWFRRWAAWEEKLDPKGK-DKVMAKAQEWAAA 1778



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 199/468 (42%), Gaps = 66/468 (14%)

Query: 1106 NLFSNFKIGQTVTARIIAK---SNKPDMKKSFL--------------WELSIKP-SMLTV 1147
            +L S +K+G  V ARII     +  P +  S L               E++ +P  +L +
Sbjct: 387  DLKSKYKVGSKVKARIICNFPTAKDPKVGVSLLPHILSLTQKRQDADTEVTKRPLEVLPI 446

Query: 1148 SEIGSKLLFEECDVSIGQRV-TGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1206
            S    K      +  IG  V TG    +      + ISR    ++  L  +  P ++   
Sbjct: 447  SSFVEKCTVRHVEADIGLFVDTG----IPGLGGFVHISRVKDGKVDALYESSGPYKVGTV 502

Query: 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR 1266
             R   +G      + SI+ EK LL       Q  I  + V I           G +V G 
Sbjct: 503  HRGRVVGYNEMDGLFSISFEKSLLE------QQYIRLEDVPI-----------GSVVNGE 545

Query: 1267 ISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTV 1323
            I K++    GV GL+++I   + G V    + +I +  P   + EG  VK +VL ++ + 
Sbjct: 546  IEKLVIKEQGVTGLIIKIADGMSGFVSENHMSDIRLQHPEKKFREGMKVKARVLSLNFSR 605

Query: 1324 RGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGC 1383
            R    + L+L+ +L              V++    ++  +D+S  M   G +  V   G 
Sbjct: 606  R---QLRLTLKKTL--------------VNSEAPVIKSYDDVSIGMKTLGTIVKVQPNGA 648

Query: 1384 FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1443
             I    +L   + +S +S+ Y+  P + F +G++V+   L V+P +KR  V+ K  D   
Sbjct: 649  HIQFYGRLRGFLPVSEMSEAYIRDPTEHFRVGQVVSVHALEVDPEAKRFIVSCK--DPGA 706

Query: 1444 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1503
                +   L NL+VGDIV  ++ +     +F+ + ++ L  +  V  L++      +  +
Sbjct: 707  FGLEKQTALKNLNVGDIVSAKVTQKTEDQIFVELVDSQLKAILPVGHLTDKSSSKNQYAW 766

Query: 1504 R---AGEKV-KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1547
            +   AG+ +  + +L+  + +R I L  K S  K   D   + S E++
Sbjct: 767  KRISAGQTLSNLMVLEKYENRRAIILSQKPSLVKAAQDKTLLKSFEDA 814



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 145/327 (44%), Gaps = 37/327 (11%)

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L+  V ++D     + LS+     S+ +T     +  ++ +PG     ++  + E  
Sbjct: 1073 GSALKARVTAVDPQNNRLDLSARSANASEAIT--WTSLKQNMTLPG-----KITKVNERQ 1125

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            V++      +G V +  + + + T +  + Y +   V   I+ VDP+++ + L++ P  +
Sbjct: 1126 VLVKLSESVSGPVHLPDMADDYSTVD-TSKYKKGDIVRVSIVDVDPSNKRIRLSMRPSRI 1184

Query: 397  HNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
             +   P         + +  GDI         D+GL +LL    T     A+V IS++++
Sbjct: 1185 MSSTSPVVDKEITKITQLATGDIVRGFVKNVADKGLFVLLGGQVT-----AFVKISNLSD 1239

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGM 500
              +++ +  ++    V+ R++        AT  L+ S    +V        +++D+K G 
Sbjct: 1240 RFLKEWKDGFQIDQLVKGRVIAL----DAATNQLELSLKSSVVDEDYTPPLSYNDIKEGQ 1295

Query: 501  VVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
            +V G V  V+ FGA  +V     V  LC    M++  +    K +K G ++  RVL V +
Sbjct: 1296 IVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNPVKDATKLYKEGDKVKARVLEVDA 1355

Query: 559  --KRITVTHKKTLVKSKLAILSSYAEA 583
              +RI    K +  + +   + S +EA
Sbjct: 1356 TKRRINFGLKPSFFEDEDTDMDSGSEA 1382


>gi|405973238|gb|EKC37962.1| RRP5-like protein [Crassostrea gigas]
          Length = 1589

 Score =  241 bits (615), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 211/815 (25%), Positives = 371/815 (45%), Gaps = 100/815 (12%)

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE 179
           A+ +T + ++ GM + G V EV+E  L I LP  L G   L + + A    L    + +E
Sbjct: 108 AHLLTRQILAPGMLILGCVKEVHEYSLSISLPNNLTGTVALTQISPAYTEQLQRLSQMSE 167

Query: 180 DNL---------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETV 230
           ++L         LPT+F +G +V+C +L + + K+     K+ LSL    + K L+ E +
Sbjct: 168 EDLMSEDTEVADLPTLFKIGMIVTCKILSVQNSKQ--SGVKVKLSLNPQDINKDLTPEGL 225

Query: 231 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVV- 284
             GM +   + S+ED GY++  G+     F+   +  +     N G  ++ G  +   + 
Sbjct: 226 HNGMAVFGSISSVEDRGYVVDLGIKGVKAFMKSLDAEKYVQLHNEGFPLRVGQPVTCALK 285

Query: 285 -------RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG- 336
                  R++  TR  + ++ DP  V+    KD   +  + L PGM V+TRV  + ENG 
Sbjct: 286 VGEDRMERAVGETR-TINVTIDPSEVATAQIKDAMEVKFNCLAPGMKVATRVMKVCENGG 344

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
           V++ FL+ F G+V + HL    P        ++  ++ ARIL++ PT+++V LT  P+++
Sbjct: 345 VVVKFLS-FKGSVPVTHLSIKTP--------HKGNQMMARILYIQPTTKSVVLTTLPHIV 395

Query: 397 HNRAPPSHVKV-----GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
                P    +     GDI + ++V+  D   G  L I        A  ++  +++E+V 
Sbjct: 396 DYSGAPVKTSLTQYDKGDIIEDARVLYTDHKRGAYLKIQD---GVTALASLKSLSDEKVT 452

Query: 452 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
            L+ ++K  S  R R+LG   ++ +    +K S F     +   + PG + + +V+ +  
Sbjct: 453 DLKAQFKRDSIHRCRVLGVDLMDNVVHVGMKKSLFSKSFVSLKSLHPGDLFECEVVELKD 512

Query: 512 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
            G IV+  G +  + P  H+++  +  P K+F  G ++  RVL   +  K + +T K++L
Sbjct: 513 KGVIVK-SGHISGIIPKMHLADIPLKMPEKRFIPGKKVKCRVLKNDLSKKSLVLTAKRSL 571

Query: 570 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
           V ++L +L+  ++    L T G++ K    G  V FY  V+GF P+ EL  +    P  +
Sbjct: 572 VNTQLPLLTDLSQLEAGLQTEGYVIKTYSKGVLVGFYANVKGFVPKKELSTEEIAHPEKV 631

Query: 630 YHVGQVVKCRIMSSIPASRRINLSFM--------MKPTRVSEDDLVKLGSLVSGVVDVVT 681
           ++ GQVVKCR++S       + LSF          K   V ED   ++G  V   V    
Sbjct: 632 FYTGQVVKCRVLSWNLDKGTVTLSFKSDDWKQHGSKLANVPED--FQIGKSVDCKVTEKR 689

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
              + V +   G S   +P  HL+D L    +M            L V D  S  +L   
Sbjct: 690 KTGLDVVLKPSGVS-AFLPRIHLSDSLATCDLM------------LEVTDVGSDGML--- 733

Query: 742 KYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
                     +P     IH               G FV     L G AP     D Q   
Sbjct: 734 ----------IPGTVKSIHS------------RFGIFVELPSGLVGLAPNRFVSDRQWQK 771

Query: 802 LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC--SSTDASFMQEHFLLEEKIAMLQSS 859
             + Y++GQ+V + IL  N +  +  +SL+   C   +T+   ++++ +  +KI   +S 
Sbjct: 772 AKEQYHIGQAVIARILQSNRDDNKCLVSLRMQECYQGNTEVDLVEDYLMALDKIEDQKSR 831

Query: 860 KHNGSELKWV-EGFIIGSVIEGKVHESNDFGVVVS 893
              G ++  V +  ++G   +  +++  D G+ VS
Sbjct: 832 FPPGIKIGGVYKASLVGRSDDKMIYKLADSGISVS 866



 Score =  232 bits (592), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 188/593 (31%), Positives = 314/593 (52%), Gaps = 49/593 (8%)

Query: 1364 DLSPNMIVQGYVKNVTSK-GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
            +L P  +V+G ++ +  + G  + L       V L++L D Y   P  +F  G+ +   V
Sbjct: 1010 NLDPGNVVEGRLQKLKKRSGILVNLVGGAKGVVCLTDLYDEYQNDPLSKFHQGQHLKCYV 1069

Query: 1423 LSVEPLSKRVEVTLKTS----DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1478
            + + P  +  +++L+ S    D       E+  + +L VG  + G I +  S  L + I 
Sbjct: 1070 IDLGP-KQTYQLSLRRSRVFNDKSDVKDPEVLGVKSLKVGQELRGYIVKKTSSDLLVRI- 1127

Query: 1479 NTNLVGLCHVSELSEDHVD--------------NIETIYRAGEKVKVKILKVDKEK--RR 1522
              ++ G    ++ S  H+D              + + I   G+KV +K L   +E+  R+
Sbjct: 1128 GRDVFGTIDGADFS--HIDRRTKRLLFNAKIVISTKVIGLDGDKVHLKFLSYKEEESGRK 1185

Query: 1523 ISLGMKSSYFKNDADNLQ-----MSSEEESDEAIEEVGSYNRSSLLE-NSSVAVQDMDME 1576
                  S    N  + L+      S +++  E  +E     R  + + N+S   Q  ++ 
Sbjct: 1186 AIKRQHSVESVNSEEELKPKPGVKSKDKQKTEETQESTQKRRKKVADKNNSDKKQSNELS 1245

Query: 1577 SEDGGSLVLAQIESRASVPPLEVNL------DDEQPDMDNGISQNQGHTDEAKTIDEKNN 1630
            +E           S   +P L+++       D   P  +N     +  +DE+ + + +  
Sbjct: 1246 NEPTS----GSQNSTDELPRLKIDYAFSWDADLTLPPTEN----MENSSDESDSEETQKK 1297

Query: 1631 RHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1689
                KK+  + E  +   E+R LE    P   ++F+R+V  SP+SS VWI+YMA  L  +
Sbjct: 1298 TKKSKKDMTKEEIMLFEFEKRQLEGSVRPEKTEDFDRMVLQSPDSSLVWIRYMAHHLESS 1357

Query: 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1749
            ++EKA+++AERAL+TI+ REE E+LN+WVAY NLEN YG P +  + KV +RA+Q  +P 
Sbjct: 1358 EIEKAQAVAERALKTISFREEQERLNVWVAYLNLENMYGTPAQ--LQKVLERAVQQNEPL 1415

Query: 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRA 1808
             V+  L+ +Y ++ + + A++L  KM+KK   +  VWL       +  + E  + ++QR+
Sbjct: 1416 SVYQQLVNIYVKSGKLEEAEQLYNKMVKKHSANKSVWLGFGDFFFRNGRVESARKLLQRS 1475

Query: 1809 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1868
            L SL +  H+  IS+ A +EFK G A+RG++MFE IL  YP+RTDLWS+Y+D  ++ GD+
Sbjct: 1476 LNSLEKRDHVDTISKFAQMEFKYGEAERGKTMFENILVNYPRRTDLWSVYIDMVVKSGDL 1535

Query: 1869 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            +  R LFER I+L +  KKMKF FKK+L++E+  G+E  +  VKQKA EYV+S
Sbjct: 1536 EGARLLFERVINLQMAMKKMKFFFKKFLDFEEKHGDELSVAAVKQKAQEYVDS 1588



 Score = 84.0 bits (206), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 193/456 (42%), Gaps = 54/456 (11%)

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
           PGM V  +V+ V   G +V      K   P+ H+S   I  P K    G +++ R+L ++
Sbjct: 328 PGMKVATRVMKVCENGGVVVKFLSFKGSVPVTHLS---IKTPHK----GNQMMARILYIQ 380

Query: 558 --SKRITVTHKKTLVKSKLAILSSYAEATDR--LITHGWITKIE-KHGCFVRFYNGVQGF 612
             +K + +T    +V    A + +     D+  +I    +   + K G +++  +GV   
Sbjct: 381 PTTKSVVLTTLPHIVDYSGAPVKTSLTQYDKGDIIEDARVLYTDHKRGAYLKIQDGVTAL 440

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
           A    L  +   +  + +    + +CR++        +++   MK +  S+   V L SL
Sbjct: 441 ASLKSLSDEKVTDLKAQFKRDSIHRCRVLGVDLMDNVVHVG--MKKSLFSKS-FVSLKSL 497

Query: 673 VSGVVDVVTPNAVVV----YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
             G  D+     V +     ++  G+  G IP  HLAD +      K  I PG +  +  
Sbjct: 498 HPG--DLFECEVVELKDKGVIVKSGHISGIIPKMHLAD-IPLKMPEKRFI-PGKKV-KCR 552

Query: 729 VLDNESS--NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           VL N+ S  +L+L+AK SL+N+   L +D S +       GYV      G  V F   + 
Sbjct: 553 VLKNDLSKKSLVLTAKRSLVNTQLPLLTDLSQLEAGLQTEGYVIKTYSKGVLVGFYANVK 612

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           GF P+ +    + A   K +Y GQ V+  +L  N + G +TLS K               
Sbjct: 613 GFVPKKELSTEEIAHPEKVFYTGQVVKCRVLSWNLDKGTVTLSFKSD------------- 659

Query: 847 FLLEEKIAMLQSSKHNGSELKWV-EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 905
                        K +GS+L  V E F IG  ++ KV E    G+ V  +  S V  F+ 
Sbjct: 660 -----------DWKQHGSKLANVPEDFQIGKSVDCKVTEKRKTGLDVVLKP-SGVSAFLP 707

Query: 906 HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
              L+ +      +++  + DV     L+  ++K++
Sbjct: 708 RIHLSDSLATCDLMLE--VTDVGSDGMLIPGTVKSI 741



 Score = 44.7 bits (104), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            +H GD+    + ++     G++V+ G H+ G +    L +I +  P   +  G+ VKC+V
Sbjct: 497  LHPGDLFECEVVELKDK--GVIVKSG-HISGIIPKMHLADIPLKMPEKRFIPGKKVKCRV 553

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L+   + +      L+ + SL              V+T    L  +  L   +  +GYV 
Sbjct: 554  LKNDLSKKSLV---LTAKRSL--------------VNTQLPLLTDLSQLEAGLQTEGYVI 596

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
               SKG  +     +   V    LS   +  PEK F  G++V  RVLS       V ++ 
Sbjct: 597  KTYSKGVLVGFYANVKGFVPKKELSTEEIAHPEKVFYTGQVVKCRVLSWNLDKGTVTLSF 656

Query: 1437 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1478
            K+ D +       N   +  +G  V  ++      GL + ++
Sbjct: 657  KSDDWKQHGSKLANVPEDFQIGKSVDCKVTEKRKTGLDVVLK 698


>gi|150865289|ref|XP_001384440.2| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Scheffersomyces stipitis CBS 6054]
 gi|149386545|gb|ABN66411.2| Part of small ribosomal subunit (SSU) processosome (contains U3
            snoRNA) [Scheffersomyces stipitis CBS 6054]
          Length = 1699

 Score =  240 bits (612), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 114/270 (42%), Positives = 180/270 (66%), Gaps = 3/270 (1%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++ +KAR I ERAL+TIN R+E E
Sbjct: 1430 LNTRAPQSVADFERLLVGNPNSSILWMNYMSFQLQLSEADKAREIGERALKTINYRDEQE 1489

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLNIW+A  NLEN +G   +E++ ++F+R+ QY D   +H  L+ +Y  +E+   A+EL 
Sbjct: 1490 KLNIWIALLNLENTFGT--DESLEEIFKRSTQYMDSLTMHQKLVSIYSMSEKYYQAEELY 1547

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
              M KKF  S  VW++    LL ++ QE    V+ +AL +LP+  HI+ + + A LEF  
Sbjct: 1548 KVMTKKFGKSISVWVQYGSFLLDRKLQEETHEVLAKALQTLPKRDHIEVVRKFAQLEFSK 1607

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1891
            G A++GRS+FEG++++ PKR DLW++Y+DQEI+  +   +  +FERA++  L  K+ KF 
Sbjct: 1608 GDAEQGRSLFEGLVADAPKRIDLWNVYVDQEIKQDNKSKVEDIFERALAKKLSRKQAKFF 1667

Query: 1892 FKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            F K+L +E+  G+E+    +K +A+EY +S
Sbjct: 1668 FTKWLAFEEEKGDEQMAARIKARAVEYAQS 1697



 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 217/859 (25%), Positives = 374/859 (43%), Gaps = 109/859 (12%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKK-----------KKKKTERKA 100
           FPRGG  +LT  E  EI  E   D  FEA        + K            KKK++  A
Sbjct: 18  FPRGGATALTPLEVKEISNEATKDVLFEAANSAKRTASSKTDRPAKKARRAPKKKSQEDA 77

Query: 101 NETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGL 160
           +E  +D           K+      IT K++  G  + G +  V + D+ + L   L G 
Sbjct: 78  DEAEED----------SKVQ--IENITFKSLIPGTLVLGQITAVGKLDITLALGDNLVGY 125

Query: 161 ARAADALDPILDNEIEANEDNL-----------------------------------LPT 185
                ++   L  +IE  E                                      L T
Sbjct: 126 IPIT-SISEELTIQIEQYEKAEDSDEESEDEEDEQESEDGKIRTATLKSKSRPEFPELKT 184

Query: 186 IFHVGQLVSCIVLQ--LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 243
           +F +GQ +   V+Q     ++ +  K++I L++    + + L  E +  G  L   VKS+
Sbjct: 185 LFSIGQWLRAKVVQPSSSQNQNQKQKKRIQLTIEPETVNQPLEDEDLIPGNALQCSVKSV 244

Query: 244 EDHGYILHFGLPSFTGFLPRNNLAENSGIDV---KPG--LLLQGVVRSIDRTRKVVYLSS 298
           EDHG I++ G    +GF+    +     +DV   KPG  LL   V +S  RT  +  + S
Sbjct: 245 EDHGIIMNTGRDGLSGFISNKEIKNTPDLDVEILKPGKVLLTSIVSKSASRTVNLRPIHS 304

Query: 299 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
              +    VT      S+D ++PG++V   V  + +NG+++        T+++  LQ  F
Sbjct: 305 TSVSKKSAVTSI---SSVDAVLPGILVDALVADVTKNGLIVKVFGLVDATINLAQLQE-F 360

Query: 359 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVR 418
                K+ Y     + AR++ V   + +  L L+ +L H  +  S     D  +   +  
Sbjct: 361 DFNALKHKYAIGNNIKARVMAVLTRAGSKKLILS-HLPHAISYTSTASNPDALEAFPI-- 417

Query: 419 VDRGLGLLLDIPSTPVSTPAYV-------TISDVAEEEVRK---LEKKYKEGSCVRVRIL 468
                G +L+      S P YV        +  V   ++ K   LE  +  GS    R++
Sbjct: 418 -----GHVLEDAEVVGSDPNYVFLKFGGSILGQVHNSKIDKDKTLEHDFNLGSKHSARVI 472

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKAL 525
           GF  ++ L    +++          SDV  G  VK  ++I V  ++ G +++     +  
Sbjct: 473 GFNSIDNLLVLTMESHVINSQYLHASDVPNGTAVKSCEIIKVLPEAGGIVIKVLDEFEGF 532

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEAT 584
            P  HMS+ ++V P +KFKVG+++  RVL  +  ++ VT KK+LV      +L+ + +A 
Sbjct: 533 VPGSHMSDIKLVYPERKFKVGSKVRGRVLSKQGNKLVVTFKKSLVNIEDDEVLARFEDAK 592

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
               T   + K   +G  V F+  ++ F P++E+        S    +GQ V  R++   
Sbjct: 593 IGFKTPAIVEKFVHNGAIVSFFGNLRAFLPKNEISETFVSNASDYLRLGQTVNVRVLDVK 652

Query: 645 PASRRINLSF-----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGT 698
              +R+ ++      +    + S DDL    S+V+  V   T ++V+V +  +G S +G 
Sbjct: 653 QEEKRMLVTLRHSSELTNTQKSSIDDLQPGKSIVTVSVVEKTKDSVIVEL--EGNSLRGV 710

Query: 699 IPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVL--DNESSNLLLSAKYSLINSAQQ--LP 753
           I T HL D + E        +  G +  ++LVL  D ++  +++SAK SLI++A+Q  +P
Sbjct: 711 IYTGHLTDGNYEQNRAYAKKLSIGEKL-EVLVLEKDLKARTVIVSAKKSLIDAAKQDAIP 769

Query: 754 SDASHIH-PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
           +    I   N ++ G+V ++   G FV F G+LTG      A   +  DL K +Y  QS+
Sbjct: 770 AYFKDIKVDNKMLRGFVKSVTNKGLFVSFAGKLTGLVLAKYATSNENEDLLKKFYKYQSI 829

Query: 813 RSNILDVNSETGRITLSLK 831
              +++++ E  R  L+LK
Sbjct: 830 ACRVINIDEENKRFLLTLK 848


>gi|332030070|gb|EGI69895.1| Protein RRP5-like protein [Acromyrmex echinatior]
          Length = 1313

 Score =  239 bits (611), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 227/389 (58%), Gaps = 11/389 (2%)

Query: 1540 QMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEV 1599
            Q+ ++E   E   EV    +S + +    ++ + D +S D   +   ++  R  VP    
Sbjct: 925  QVPNKENKKETKREVEE-EKSKIKDIDENSLSESDEDSVDESEMKANKLVKRLRVPEFGF 983

Query: 1600 NLDDEQ-----PDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEER--EQEIRAAEERL 1652
            + D +      P+++      Q   +E K   +K    A ++ ++ER  E+EIR  EE L
Sbjct: 984  SWDIKAKLAAFPNVETSSDDEQEFEEELKQKKKKKKLSATERREQERQKEREIRQREEAL 1043

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            +   AP + D+F+RL+ SSP+SS VW++YMA+ L   +++KAR++A RA++TIN REENE
Sbjct: 1044 VSNQAPNSIDQFDRLILSSPDSSLVWLQYMAYHLQATEIDKARAVARRAIKTINFREENE 1103

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            +LN+W A+ NLE+ YG    E++  VFQ A++  D  KV++ +L ++    +    ++L+
Sbjct: 1104 RLNVWNAWLNLESRYGTA--ESLNDVFQEAVRTNDAYKVYMHMLTIHADAGRKTELEKLI 1161

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
              +I KFK   + W+     LLK   +E  + ++QRAL SLP  +H+  + + A LE K 
Sbjct: 1162 GTVISKFKQDPQTWIDCGAALLKIGMKEKSRQIMQRALQSLPASQHVNLLVRFANLENKL 1221

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1891
            G  +R +++FE ILS YPKR D+WS Y+D  I+  D+DL R + E+A   +L P+KMK L
Sbjct: 1222 GDKERAQTLFENILSSYPKRIDVWSCYVDCLIKSKDIDLARKVLEQACVQTLSPRKMKIL 1281

Query: 1892 FKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            F K++ +E+  G  E +  V+Q A +YVE
Sbjct: 1282 FMKFINFEEKYGTSEAVARVRQMAADYVE 1310



 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 206/443 (46%), Gaps = 26/443 (5%)

Query: 284 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
           ++++D    V+ LS+    +      D+  +S+D+L PG  +S  V  +L NG+ + F  
Sbjct: 142 IKTVDNM-SVIKLSTKRKKIDSANVHDI--MSLDVLTPGTKLSLYVTKVLSNGLQVRFGK 198

Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS 403
              G ++  +L N   T      Y  + +V   +L++ PT +    +L    L + +   
Sbjct: 199 NNVGYINRIYLNNPLST------YVDNMEVIGTLLYILPTVKLAYFSL----LTDISEKE 248

Query: 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
            + VG+I + ++V+  +   G++  +  + +    Y+++         K+  ++KE S  
Sbjct: 249 KLPVGNIINNARVLYRESS-GIIFKLSKSGLR--GYISLRR-TNVPFTKIPIEFKESSTH 304

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG-V 522
           + R+L +  +E      ++    +   F+ SD+  G ++   ++ +++  + +    G +
Sbjct: 305 KCRVLAYNWMEHFYVCTMEEEILKQKYFSASDLSIGDILTVTIVHIETSRSNIHVQAGKI 364

Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYA 581
             + P+ H+S+  +     K KVG  +  RVL   K  ++  T K++LVKSKL +L  + 
Sbjct: 365 CGIVPMEHISDSGL-SALHKLKVGDNVEARVLDKNKINQVKFTLKQSLVKSKLPVLHDFG 423

Query: 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
           EA   L  HG I  I K+G  VRFY  ++G+ PR  L  D   + +  + VGQ V   + 
Sbjct: 424 EAKCGLKYHGTIGIINKNGMLVRFYGIIKGWVPRITLNSD-TYDMNWNFSVGQTVTVCVE 482

Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK---GT 698
           S      R+ L  + +  + S    + +G ++ G V   +   + + +  +       G 
Sbjct: 483 SVEKDQCRMTLRIVSEKEKQSIS--LSIGDIIEGTVSESSIKGIYLKIQKEDNENVVTGF 540

Query: 699 IPTEHLADHLEHATVMKSVIKPG 721
           +P+ H+A  +E  +++ S   PG
Sbjct: 541 LPSGHMAPCIEVGSLLASRCSPG 563



 Score = 47.4 bits (111), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 39/229 (17%)

Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 756
           G +P EH++D    A      +K G   +  ++  N+ + +  + K SL+ S   +  D 
Sbjct: 366 GIVPMEHISDSGLSAL---HKLKVGDNVEARVLDKNKINQVKFTLKQSLVKSKLPVLHDF 422

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
                    HG +  I + G  VRF G + G+ PR   ++    D++  + VGQ+V   +
Sbjct: 423 GEAKCGLKYHGTIGIINKNGMLVRFYGIIKGWVPRI-TLNSDTYDMNWNFSVGQTVTVCV 481

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
             V  +  R+TL +                   +EK ++  S               IG 
Sbjct: 482 ESVEKDQCRMTLRIVSE----------------KEKQSISLS---------------IGD 510

Query: 877 VIEGKVHESNDFGVVVSFEEHSD---VYGFITHHQLAGATVESGSVIQA 922
           +IEG V ES+  G+ +  ++  +   V GF+    +A   +E GS++ +
Sbjct: 511 IIEGTVSESSIKGIYLKIQKEDNENVVTGFLPSGHMA-PCIEVGSLLAS 558


>gi|281210740|gb|EFA84906.1| HAT repeat-containing protein [Polysphondylium pallidum PN500]
          Length = 936

 Score =  239 bits (610), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/307 (40%), Positives = 192/307 (62%), Gaps = 30/307 (9%)

Query: 1642 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1700
            EQ+I+  E+ L + +  P +  +FER++  SPNSSF+W+KYM+F L + ++ KAR I ER
Sbjct: 629  EQDIKEKEDLLSDHNIQPESSQDFERVLLGSPNSSFIWVKYMSFYLGLNEIHKAREIGER 688

Query: 1701 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1760
            AL+ I   E  E  N+W+A FNLEN YG+  +++++K+FQ+A+QY DPK ++ +++ + E
Sbjct: 689  ALKKIIPTEVLELRNVWIALFNLENMYGS--KDSLLKLFQKAIQYQDPKTMYFSIVNILE 746

Query: 1761 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIK 1819
             T +    +E      KKF+HS KVW R  + L++  + +    +++RA  SLP+ K ++
Sbjct: 747  ATSKFDAEEEYFKMFFKKFRHSAKVWCRYGEFLIRANKVDLFHQILKRATESLPKRKQVE 806

Query: 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD------------ 1867
             IS+   LEFK G A+RGR++FEG++S YP RTDLW++YLD EI+L +            
Sbjct: 807  VISKFGQLEFKLGEAERGRTIFEGMVSSYPTRTDLWNVYLDMEIKLFNEHIKQQQDSSNN 866

Query: 1868 --------------VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1913
                          +  IR LFER I+L    + +K  FK+YL++EK  G+++ IE+VKQ
Sbjct: 867  NSMTNQQLQQQQSIIKRIRQLFERTITLKTSDRNIKQFFKRYLQFEKDNGDQQSIEHVKQ 926

Query: 1914 KAMEYVE 1920
             A+ YVE
Sbjct: 927  SALAYVE 933


>gi|340727403|ref|XP_003402033.1| PREDICTED: protein RRP5 homolog [Bombus terrestris]
          Length = 414

 Score =  238 bits (608), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 118/288 (40%), Positives = 196/288 (68%), Gaps = 3/288 (1%)

Query: 1634 KKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEK 1693
            +++++ ++E+EIR  EE L + + P + D+F+RLV SSP+SS VW++YMA+ L   ++EK
Sbjct: 124  RREQERQKEREIRQREEALAKNELPNSVDQFDRLVLSSPDSSIVWLQYMAYHLQATEIEK 183

Query: 1694 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1753
            AR++A RA++TIN REE E+LN+W A+ NLE+++G P  E++  +FQ A++  D  K++ 
Sbjct: 184  ARAVARRAVKTINFREEKERLNVWKAWLNLESKFGIP--ESLNDIFQEAVRSNDSLKIYS 241

Query: 1754 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812
             +L ++    +     + +  MI KFKH  ++W    + LL+   ++  + V+QRAL SL
Sbjct: 242  HMLTVHVEAGRQMELQKTIDTMIGKFKHIPEIWFNCGECLLRMGLKDKSRHVMQRALQSL 301

Query: 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872
            P  +H+  +++ AI+E K G  +R +++FE ILS YPKR D+WS Y+D  ++  D+D+ R
Sbjct: 302  PASEHVNLMARFAIMENKFGDKERAQTLFEQILSSYPKRVDIWSCYIDSLVKSNDIDIAR 361

Query: 1873 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
             + ERA+  +LPP+KMK LFKK++ +E+  G +E +  V+Q A+EYVE
Sbjct: 362  KVLERAVVQTLPPRKMKILFKKFINFEEQHGTQEDVTRVQQLAVEYVE 409


>gi|395334532|gb|EJF66908.1| U3 snoRNP-associated protein Rrp5 [Dichomitus squalens LYAD-421 SS1]
          Length = 1492

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/265 (43%), Positives = 179/265 (67%), Gaps = 3/265 (1%)

Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1716
            AP +  +FERL+  SPNSS++W++Y+AF L +++++KAR IA+RAL+TIN REE EKLN+
Sbjct: 1221 APESNSDFERLLLGSPNSSYLWVRYIAFQLQISEIDKAREIAKRALKTINFREEQEKLNV 1280

Query: 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
            W+A  NLEN YG   EE++   F+ A ++ D K +HL +  ++E++++ + A+E   K  
Sbjct: 1281 WIALLNLENVYGT--EESLEATFKDAARHNDSKTIHLRMAEIFEQSDKLEKAEEQYKKTC 1338

Query: 1777 KKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835
            KKF  S KVW    +  LK+   E  + ++ R+L SL + KH+K I + A LE+K G  +
Sbjct: 1339 KKFSQSSKVWSLFGEHYLKRGMLEEARKLLPRSLQSLEKRKHLKTICKFAQLEYKLGDPE 1398

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            RG+++FEGI+  +P+R D+WSIY+D E   GD++ +R LF R ++L +   K K  FKK+
Sbjct: 1399 RGKTIFEGIVDSHPRRWDMWSIYMDMEAGQGDINSLRNLFNRVLTLKMTSHKAKSFFKKW 1458

Query: 1896 LEYEKSVGEEERIEYVKQKAMEYVE 1920
            LE E+ +G+EE    VK KA+E+ +
Sbjct: 1459 LELERRLGDEEGAHAVKTKAIEWTQ 1483



 Score =  220 bits (560), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 227/846 (26%), Positives = 379/846 (44%), Gaps = 87/846 (10%)

Query: 21  KASKNQFKNSKKQINDAVE--AQDLALPPDDDVPVFPRGGGHSLTQRE----RDEIHAEV 74
           KA K + +   K+  D  E   Q ++    DD+  FPRGGG +LT  E    R E   EV
Sbjct: 17  KAKKTKTEEQSKKSKDKAEKPTQPVSFLVSDDID-FPRGGGTTLTPLEVKTLRAEAAKEV 75

Query: 75  DAEFEAVERGLHKKNKKKKKKTERK--ANETVDDLGSLFGDGISGKLPRYANKITLKNIS 132
           D E  A      +K+ K+K+K+E +  +N    D     G  I     +  +   L+ + 
Sbjct: 76  DKELFA---ATTEKSVKRKRKSEARGSSNSAAKDGKEKAGIRIEHLNYKTLHLTRLQRVV 132

Query: 133 AGMKLWGVVAEVNEKDLVICLPGGLRG----------LARAADALDPI----LDNEIEAN 178
            GMK+ G V  V    L++ LP  L            L    ++++ +     D+E E +
Sbjct: 133 VGMKILGQVVAVEPLALIVSLPNQLFAHVPITHISTQLTHTLESMEDVEMGNSDDEDEDS 192

Query: 179 EDNLLPTIFHV---GQLVSCIV-------------LQLDDDKKEIGKRKIWLSLRLSLLY 222
             + +P +F +   GQ V  +V             L    D+ +   R++ L+L    + 
Sbjct: 193 SPSGVPDLFEIFRPGQYVRAVVTAVHPPGTTDVSGLGRARDEVQKASRRVELNLVPEKVN 252

Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS-GIDVK--PGLL 279
           +G+    ++ G  ++A VKSIEDHGYIL  G+   +GFL   +  + S G + K   G L
Sbjct: 253 EGVVKSDLRTGFTMSAAVKSIEDHGYILDLGMSDVSGFLSFKDAQKGSWGTEKKLHIGQL 312

Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
           L   V  +    +   +S DP T+S     ++  +S   +VPG +V + V ++  +G++L
Sbjct: 313 LDVAVVKMSGNGRTCNVSVDPKTISTASITEVSNVSS--IVPGALVQSLVTAVQSDGLVL 370

Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDP-TSRAVGLTLNPYLLH 397
             L YF GT+D FHL    P  +    Y   +KV ARIL+ ++P T     L+L  +++ 
Sbjct: 371 QVLGYFDGTIDQFHLVPGQPEVH----YQVGQKVKARILYDINPSTPPRFALSLADHVVR 426

Query: 398 --NRAPPSHVK---------VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA 446
              ++P +            +G I +  KV RV+   GL++++ S       ++ IS  +
Sbjct: 427 FTTKSPSADAATTDLRNAYPIGTILEAVKVARVESERGLVVNVGS---GIEGFIHISQTS 483

Query: 447 EEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
           +E V  L      +K G   R R+ G+  L+G+    L+AS         +DV+ G V+K
Sbjct: 484 DEHVPTLSASSGAWKLGMVHRARVTGYYPLDGILQLSLRASVLGQKFLQVADVQVGEVIK 543

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561
           G V  +      V   G V  +    H ++  +  P K+FK G+ L  RVL V  + KR+
Sbjct: 544 GTVKKLTDSALFVSISGNVDGVIWPNHYADIALKHPQKRFKPGSSLKCRVLVVDPERKRV 603

Query: 562 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
            +T KKTLV+S L  ++ +++A   ++TH  + K+      V  YN ++   P  E    
Sbjct: 604 ALTAKKTLVESTLPTITQFSDAQVGVLTHAVVFKVSDKSLQVELYNNLKATVPAREASET 663

Query: 622 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP----TRVSEDDLVKLGSLVSGVV 677
                SS + +G+ V+ RI +  P + RI  S         + +++   V +G +V GV+
Sbjct: 664 TVPSLSSAFPIGKPVQVRITAVDPETSRITASIRQASPNYKSAITDISGVDIGDIVEGVI 723

Query: 678 DVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV-MKSVIKPGYEFDQLLVLD-NESS 735
             V  +  VV  +        +   +LA+  E +   ++S +K G +   L+V   N   
Sbjct: 724 SDVRKDKAVV-ALQPTQVTALLSLNNLANRREVSVAQLRSTLKTGDKLQDLVVTSRNPEK 782

Query: 736 NLLLSA-----KYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
             +L A     K  L+    QL  D   + P  +V G V      G  V+    ++G   
Sbjct: 783 GFVLVAMKPKEKEQLVQK-NQLSIDT--VQPGQLVGGRVLRHARHGALVKITKAISGILH 839

Query: 791 RSKAVD 796
            + A D
Sbjct: 840 PTDACD 845


>gi|389751237|gb|EIM92310.1| nucleic acid-binding protein [Stereum hirsutum FP-91666 SS1]
          Length = 1486

 Score =  237 bits (604), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 118/269 (43%), Positives = 174/269 (64%), Gaps = 3/269 (1%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L+   P +  +FER +  SPNSSF+WI+YM+F L ++++EKAR IA+RAL TIN REE E
Sbjct: 1206 LQTKTPESNADFERNLLGSPNSSFLWIQYMSFQLQLSEIEKAREIAKRALATINFREERE 1265

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLN+W+A  NLEN YG   +E++   F+ A ++CD K VHL L  + E +E+ +  +E  
Sbjct: 1266 KLNVWIALLNLENIYGT--DESLEAAFKDAARHCDSKTVHLRLAAILEESEKLEKTEEHF 1323

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
             +  KKF  S KVW    +   K    E  + ++ R+L SL + KH+K IS+ A L++K 
Sbjct: 1324 KRTCKKFGQSSKVWTLFGEFYFKHDNTEEARKLLPRSLQSLEKRKHLKTISKFAQLDYKL 1383

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1891
            G  +RG+++FEGI+  +PKR DLW+IYLD E    D+  +R LF+R ++  +   K K  
Sbjct: 1384 GDPERGKTIFEGIVDSHPKRWDLWTIYLDMEAGQKDIQHLRNLFDRVLAQKMTSHKAKTF 1443

Query: 1892 FKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            FKK+LE E+ +G+EE    VKQKA+E+ +
Sbjct: 1444 FKKWLELERRLGDEEGATLVKQKAIEWTQ 1472



 Score =  233 bits (594), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 240/863 (27%), Positives = 389/863 (45%), Gaps = 125/863 (14%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG S T  E   I AE   E       L KK KK++ K + K        G   G+
Sbjct: 51  FPRGGGSSFTPLEVKTIRAEAVKE---ANDELFKKLKKQRSKVDVKGK------GKATGE 101

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG-------LARAADA 166
           GI+G   R  + +  K I+ GMK+ G V  V    L++ LP  L G        +    A
Sbjct: 102 GINGDALRIEH-LNYKRIAVGMKILGQVVSVQPLALIVSLPNQLLGHIPITQISSELTTA 160

Query: 167 LDPILDNEIE----ANEDNL---------LPTIFHVGQLVSCIVLQLDDDKKEIG----- 208
           L+ +  NE E    A ED+          L  IF  GQ V C+V  + +     G     
Sbjct: 161 LETMDTNEDEGMSSAGEDDDEKKTSAVPDLHEIFEPGQYVRCVVTAVHEAGSTEGMAGVG 220

Query: 209 ---------KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG 259
                     R++ LSL    + +G+    ++ G  ++A VKS+EDHGYIL+ GL + +G
Sbjct: 221 RGKSAVEKSSRRVELSLLPEQVNEGVVKSDLKPGFTMSAAVKSVEDHGYILNLGLTNISG 280

Query: 260 FLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKG------ 313
           FL    +A++      PG     V R +D +  VV LSS+  T +  V+ D  G      
Sbjct: 281 FLSSKEVAKSI-----PGKAKLHVGRILDVS--VVKLSSNGRTCT--VSADSAGRASASL 331

Query: 314 ---ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQH 370
               S+  ++PG +V   + ++L  G+    L +F G VD FHL    PTT +K      
Sbjct: 332 TEVTSVTSILPGELVQCLITAVLPTGLNFQVLGFFDGIVDSFHLPPGDPTTLFKIG---- 387

Query: 371 KKVNARILFVDP--TSRAVGLTLNPYLL---------HNRAPPS---HVKVGDIYDQSKV 416
           +KV AR+L+  P  +     L+L+P++L          + A P+      +G I +  +V
Sbjct: 388 QKVKARVLYEIPGHSPPRFSLSLSPHILALDVKHSETEDEAAPTIKEAYPIGTILEAVRV 447

Query: 417 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHL 473
           +RV+   GL++++         ++ IS V+++ V  L      +K  S  R R+ G+  L
Sbjct: 448 IRVETERGLVVEVRP---GIQGFIHISHVSDDHVPSLSPSSGAWKLNSTHRARVTGYHPL 504

Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
           +GL    LK S  E      SDV+ G VVKG V  +      V   G V  +    H ++
Sbjct: 505 DGLLQLSLKTSILEQKFLQVSDVQVGEVVKGTVKILTDTALFVSISGAVDGVVFPNHYAD 564

Query: 534 FEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHG 591
             + +P K+FK GA +  RV  V  + +RI++T KKTLV+S+L I++ + EA   ++TH 
Sbjct: 565 ILLKQPQKRFKPGANIKCRVFTVDPERRRISLTAKKTLVESELPIITKFEEAKVGMLTHA 624

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            I +I +    + F+N ++G  P+ E   D     ++ + VG+ VK RI++  P    I 
Sbjct: 625 VIFRISERRLQIEFFNNIKGSVPQKEAS-DSATPLATAFSVGKPVKVRIIAVNPEDGHIT 683

Query: 652 LSFMMKPTR----VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
            S           V++   V++G  V G V  +  +  ++ + + G  +  +  ++LA+ 
Sbjct: 684 ASIRQATAGSEPIVADISGVEIGHTVDGDVAEIHSDNALIILKSTGI-RALLSLKNLANA 742

Query: 708 LEHATV-MKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASHIHP---- 761
            +     ++  +  G   D L+V+  N    +++ A     N  +  P+   H HP    
Sbjct: 743 RKVPVAQLRGALSVGEHLDDLVVVSRNPEKGIVIVA-----NRPKTKPA-LEHSHPLTID 796

Query: 762 ----NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ------- 810
                 VV G V      G  ++    +TG             D+S  Y VG        
Sbjct: 797 TVEIRQVVGGRVLRHHRNGTLLKLSSSVTGTL--------HPTDVSDNYDVGNIFPQIDS 848

Query: 811 SVRSNILDVNSETGRITLSLKQS 833
            V++++L ++ E  ++ LS +QS
Sbjct: 849 IVKASVLSIDKEKKQLVLSSRQS 871


>gi|321477952|gb|EFX88910.1| hypothetical protein DAPPUDRAFT_220970 [Daphnia pulex]
          Length = 1487

 Score =  237 bits (604), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 118/298 (39%), Positives = 191/298 (64%), Gaps = 4/298 (1%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAF 1684
            D +     K +E +  E ++   EE L   + AP T D+F+R+V +SPNSS +W++YMAF
Sbjct: 1185 DRRERAREKLEEAKVNEAKLSQIEEELNNPERAPVTTDDFDRMVLASPNSSILWVQYMAF 1244

Query: 1685 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1744
             L  A++EKAR++A+RAL+ ++ REE EK N+W+A+ NLE+ YG    E      Q A++
Sbjct: 1245 HLENAEIEKARTVAQRALKIMSFREEQEKFNVWIAWLNLEHMYGT--TEGYESTLQEAIR 1302

Query: 1745 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQA 1803
            Y +P K++  +   +E++ +   A+ L   M+KK+K +  VW+      ++  + +  + 
Sbjct: 1303 YNEPFKIYRQMALNFEQSGKFDDAESLYTTMLKKYKQNKSVWINACLFYVRNSKLDTARG 1362

Query: 1804 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863
            V QRAL  L + +HI  IS+ A LE K G   RG+++F+ ++  YPKRTDLW +Y+D   
Sbjct: 1363 VFQRALSILDKKEHIDLISRFAQLEMKFGQVGRGKTLFDTLMMSYPKRTDLWLVYIDTLT 1422

Query: 1864 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            ++ D++  R + ER I+L LP KKMK +F+K+LE+E   G+EE+ +YV++KA++YVES
Sbjct: 1423 KVDDIESARQVLERCITLQLPAKKMKTIFQKFLEFETHHGDEEKQDYVRKKALDYVES 1480



 Score =  159 bits (402), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 191/851 (22%), Positives = 355/851 (41%), Gaps = 69/851 (8%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI--------LDNEIEA 177
            T K ++ GM++   V EV E D+++ LPG ++ +    +   P          D ++EA
Sbjct: 87  FTFKMLAEGMQVLSRVQEVRELDVLLSLPGRIQAVVPITNISAPYSKLIDMLAQDEDVEA 146

Query: 178 NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
                L  I   G L  C + ++ +D    G  K+  SL    +   +    + +GM +T
Sbjct: 147 KG---LKEILTAGDLFPCSIKEVTND----GSFKVTASLNPVDVNSDIPSTALCKGMKMT 199

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLS 297
           A V+S+EDHGY++  G+ +   FL +        +D+  G ++   V        V  L+
Sbjct: 200 AAVQSVEDHGYVMDVGILNVRSFLTKV-----PDLDLAVGQIVSVCVTGCQIDGHVATLT 254

Query: 298 SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
               TV     K    +++  L+P   +   V  +L  G+ ++F     G +   HL N 
Sbjct: 255 LS--TVESVKFKQNVELNLSTLIPATKLHVTVNKVLPQGLTVTF-GNMVGYIHKDHLVNI 311

Query: 358 FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLH---NRAPPSHVKVGDIYDQS 414
             + +    Y +     A +L+  P   AV L+L   L+    N      + +G  ++ +
Sbjct: 312 NDSVSA---YEKSANYTAIVLYTLPLVNAVYLSLKSSLVKPDLNVNEKDTIALGQFFEAT 368

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
                  GL + L+  +       +++ +    E+ R L   +   S  R R+L    L+
Sbjct: 369 ITESTSAGLFVQLNKKAKGFVPLRHLSDNQDIFEDTRAL---FPVKSRKRCRVLYHASLD 425

Query: 475 GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE- 533
            +    +K S        + D   G +++GK+ +V   G  V     +K   P  H ++ 
Sbjct: 426 DIYICTMKKSLITQKALRYEDFIVGEILEGKIDSVSPAGVSVHLGVNLKGFIPKLHWADD 485

Query: 534 FEIVKPGKKFKVGAELVFRVLGVKSKRITV--THKKTLVKSKLAILSSYAEATDRLITHG 591
             + KP  +F+VG  +  RVL V   R T+  T KK+++  K+   S  ++    L   G
Sbjct: 486 PRLKKPELRFRVGEPITCRVLKVMIDRKTIHLTCKKSMLDEKVVAYSCTSQLETNLALKG 545

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRIN 651
            +  IEK G  V F++G+ G+ P + L  +   +    +++G+V+ C++  SI  S ++ 
Sbjct: 546 TVALIEKGGVLVSFFDGLTGYIPGNRLLKNGITDIHHYFYMGKVIDCKV-ESINESGKVI 604

Query: 652 LSF----MMKPTRVSEDDLVKLGSLVSG----VVDVVTPNAVVVYV-IAKGYSKGTIPTE 702
           L+     + KP  + E  ++ LG++V      V D V  N+  + V I    + G IP E
Sbjct: 605 LTLAGSGLTKPKSLPEKPILNLGTIVECKVERVYDAVEGNSSGLEVSIPSLETTGIIPVE 664

Query: 703 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN--SAQQLPSDASHIH 760
           HL+D  + A+ +    +PG    + +V  +     +L+ K +++N       P     + 
Sbjct: 665 HLSDFPKAASHLLDCYRPGQVIKEAVVYMSSKLQTVLTLKPNIMNFIKGNGYPKSVDDVA 724

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-------VGQSVR 813
             S +          G F + L       P    V      +S   Y       +  ++ 
Sbjct: 725 MGSTLPCVATLHRPFGVFAQLLC-----PPNKFDVLFPPGKMSPNLYSYMENGTMHMTLE 779

Query: 814 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM-LQSSKHNGSELKWVEGF 872
             ++ +  E  +I LS   +C     A  ++ +  +EEKI + L+ S   G  LK +   
Sbjct: 780 GEVIRIEKEEKKIFLSALNACVPENAARVLEAYLKVEEKIKVHLRESSDEG--LKNLASL 837

Query: 873 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAER 932
            +G V+ GK+    D    + FE    + G +  +  A    +   +I  +++       
Sbjct: 838 KLGDVVVGKLLTEFDSSADLEFELPHGINGIVPAYHHAKKDFKKNDLIVGSVM------- 890

Query: 933 LVDLSLKTVFI 943
            VD  +K V++
Sbjct: 891 YVDPIMKKVYV 901



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 117/280 (41%), Gaps = 29/280 (10%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            GL V  G ++ G +H   L NI  +D +S Y++       VL     V   +   LSL+S
Sbjct: 291  GLTVTFG-NMVGYIHKDHLVNI--NDSVSAYEKSANYTAIVLYTLPLVNAVY---LSLKS 344

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            SL                 P  ++ + + ++     +  +   TS G F+ L++K    V
Sbjct: 345  SLV---------------KPDLNVNEKDTIALGQFFEATITESTSAGLFVQLNKKAKGFV 389

Query: 1396 LLSNLSDG--YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1453
             L +LSD     E     FP+      RVL    L      T+K S     +Q  +    
Sbjct: 390  PLRHLSDNQDIFEDTRALFPVKSRKRCRVLYHASLDDIYICTMKKS---LITQKALR-YE 445

Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVK 1512
            +  VG+I+ G+I  V   G+ + +   NL G       ++D  +   E  +R GE +  +
Sbjct: 446  DFIVGEILEGKIDSVSPAGVSVHL-GVNLKGFIPKLHWADDPRLKKPELRFRVGEPITCR 504

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1552
            +LKV  +++ I L  K S           +S+ E++ A++
Sbjct: 505  VLKVMIDRKTIHLTCKKSMLDEKVVAYSCTSQLETNLALK 544


>gi|322799748|gb|EFZ20953.1| hypothetical protein SINV_01223 [Solenopsis invicta]
          Length = 321

 Score =  235 bits (599), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/291 (42%), Positives = 190/291 (65%), Gaps = 4/291 (1%)

Query: 1633 AKKKEKE-EREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADV 1691
            A+++E+E ++E+EIR  EE L     P + D+F+RLV SSP+SS VW++YMA+ L   ++
Sbjct: 31   AERREQERQKEREIRQREEALASNQTPNSIDQFDRLVLSSPDSSLVWLRYMAYHLQATEI 90

Query: 1692 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1751
            +KAR++A RA++TIN REENE+LNIW A+ NLE+ YG    E++  VFQ A++  D  KV
Sbjct: 91   DKARAVARRAIKTINFREENERLNIWNAWLNLESRYGTA--ESLNDVFQEAVRTNDAYKV 148

Query: 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALL 1810
            ++ +L +     +    ++L+  +I KFK   + W+     LLK   +E  + ++QRAL 
Sbjct: 149  YMHMLTVQADAGRKNELEKLISTVIGKFKQDPQTWIDCGTALLKIGMKEKSRQIMQRALQ 208

Query: 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1870
            SLP  +HI  + + A LE K G  +R +++FE ILS YPKR D+WS Y+D  I+  ++DL
Sbjct: 209  SLPASQHINLLVRFANLENKLGDQERAQTLFENILSSYPKRVDVWSCYVDCLIKSKNIDL 268

Query: 1871 IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
             R + ERA   +LPP+K+K LF K++ +E+  G  E +  V+Q A +YVE+
Sbjct: 269  ARKVLERACVQTLPPRKIKTLFTKFINFEEKYGTSEAVARVRQMAADYVEN 319


>gi|255953027|ref|XP_002567266.1| Pc21g02010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588977|emb|CAP95098.1| Pc21g02010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1806

 Score =  234 bits (596), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 349/1458 (23%), Positives = 613/1458 (42%), Gaps = 219/1458 (15%)

Query: 1    MAASSRKS---QKKSSKDGPKFNKASKNQFKNSKKQINDAV-----EAQDLALPPDDDVP 52
            MA + RK    ++ +++   K  K    + K   K+ NDA      +A +L++  DD+ P
Sbjct: 1    MAPTKRKGNAPEENTARQPQKRAKVGAEESKKDHKKSNDATTSTAGKASELSVLRDDE-P 59

Query: 53   VFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTE------------- 97
             FPRGG   LT  ER +I   A  D  FE  E G +KK  +K    E             
Sbjct: 60   SFPRGGASVLTPLERKQIQIQANRDVLFEQKESG-NKKPAQKAPSNEFAEESDDDVEMED 118

Query: 98   ------------------RKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWG 139
                              + A +  DD   +  +G+S            K I  G  + G
Sbjct: 119  EETTTTSKKPRKKKSKSKKTAGKETDDKQDVRIEGLS-----------FKRIVPGAMILG 167

Query: 140  VVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL------------LP 184
             V+ +N  D+ + LP  L G   L   +  L+  L+  +    ++             L 
Sbjct: 168  QVSSINAHDIGLSLPNNLTGYVPLTSVSKGLEDRLEKLLNDEGEDDDAEDSSDDESFDLK 227

Query: 185  TIFHVGQLVSCIVLQLD---DDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
              F++GQ +   V+      DD K   K++I LS+       G S   +     + A V 
Sbjct: 228  DHFYLGQYLRAFVVSTGSNPDDPKAKSKKRIELSVDPRQTNTGFSKSDLVVNSAVQASVV 287

Query: 242  SIEDHGYILHFGL--PSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYL 296
            S+EDHG ++  G+      GF+  ++   +  +D   +K G +   +V   + +  V+ L
Sbjct: 288  SVEDHGVVMDLGIEGSELKGFM--SSKETDPSVDYSSIKEGSVFLCMVTGQNPSGNVIKL 345

Query: 297  SSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
            SS+  T +     +      +I+  +PG      +  +  NG++   +     TVD+   
Sbjct: 346  SSNFQTSASIKKSNYLSSAPTINTFLPGTAAEVLLTEVTSNGMIGKIMGMLDATVDLVQ- 404

Query: 355  QNTFPTTNWKND----YNQHKKVNARILFVDPTSRA--VGLTLNPYLL----HNRAPPSH 404
                 + N K D    Y    K+  RI+   P +    VG ++  ++L      R P S 
Sbjct: 405  ----SSINGKVDLEKKYKIGAKIKGRIISTFPAAEPLKVGFSMLDHVLKLSSEARGPGSS 460

Query: 405  ---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK---YK 458
                 +  I  + KVV+VD+GLG+   I  T      +V +S +++ +V  +++    ++
Sbjct: 461  DDAPAISAIIPEVKVVKVDQGLGVYARIGET--KHMGFVHMSRLSDGKVETIDESSGAFQ 518

Query: 459  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-G 513
              +    R++G+  ++ L     + S  E       DV  G +VKGKV    I  +   G
Sbjct: 519  LDAVHEARVIGYNSIDNLYILSFEKSVIEQPFLRVEDVNVGAIVKGKVEKLLIGAEGMNG 578

Query: 514  AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
             IV    G+  L P  H ++  +  P KKF+ G +L  R+L V  + ++I +T KK+L+ 
Sbjct: 579  LIVNLADGITGLVPSMHFADTMLQFPEKKFREGQKLSLRILSVNLEKRQIRLTLKKSLLN 638

Query: 572  SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
            S+ +I   Y + T    + G I  ++ HG  V+FY  V+GF P SE+      +P+  + 
Sbjct: 639  SESSIWKDYKDITPSAQSPGTIVSLQSHGAVVQFYGEVRGFLPVSEMSEAYIQDPAQHFR 698

Query: 632  VGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVV 686
            +GQVV    +S   +  R+ +S    P+  +E      + +  G LVSG V   + + V+
Sbjct: 699  LGQVVNVHALSVDVSLGRLAVS-CKDPSTFTEKYREAFENLHPGHLVSGTVFEKSNDDVL 757

Query: 687  VYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKY 743
            + +   G     +  E L D      + M S ++ G + + LLVLD + ++ L+  S++ 
Sbjct: 758  LKLDESGLV-ARLDAEQLIDGSASKQSSMLSKLRVGQKLNDLLVLDIQRAHRLIKVSSRA 816

Query: 744  SLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRAD 801
            SL  +A+Q  +P     +   S+V G+V NI   G FV FLG LTG  P+    D   A+
Sbjct: 817  SLKKAAKQKNIPGQFEEVQEGSLVTGFVRNITPDGVFVEFLGGLTGLLPKRLIED---AN 873

Query: 802  LSKTYY---VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS 858
            L + +Y     Q++  N+  V+ E  R  LS+K     ++ A+  +     +E IA    
Sbjct: 874  LKQPHYGLTKAQTIVVNVQSVDQEFKRFILSMK--PVQASQAAPKKAAKQTDETIA---- 927

Query: 859  SKHNGSELKWVEGFIIGSVIEGK----------VHESNDFGVVVSFEEHSDVYGFITHHQ 908
                   +K +  F  G V+E K          V  +++    +   E  D +  I   +
Sbjct: 928  -NPVDDNIKSMSDFTFGRVVECKVVSIKATQVNVQLADNIQGRIDVSEVFDDWKDIKDRK 986

Query: 909  LAGATVESGSVIQAAILDVAKAER--------------LVDLSLKTVFIDRFREANSNRQ 954
                  ++  ++ A IL V  A                + +LSLK  +I     A  N +
Sbjct: 987  QPLRFFKAKQILSARILGVHDARNHKFLPISHRTGKYPVFELSLKPSYIKAANPAPLNME 1046

Query: 955  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQ 1012
                         + V  +    V  V ++ L ++L P     + +   S D +     +
Sbjct: 1047 ------------QVQVGSSWVGFVNNVADDCLWVNLSPNVRGRLRFMDASDDLSLLTDME 1094

Query: 1013 KQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSY---DVGSLVQA 1069
            K F  G ++   V A+   +  G L L           S+K+   K ++    VG ++  
Sbjct: 1095 KNFPIGSALKVQVTAV--DAEKGHLNL-----------SAKQGYDKLAFGDISVGMILPG 1141

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPD 1129
             +T++   +L ++ G    G +++T++ DD S     + +     + + A +IA      
Sbjct: 1142 RVTKVTERQLIMQLGESLVGAVNLTDLADDYSKANPTVHNK---NEVLRACVIAVD---- 1194

Query: 1130 MKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHL 1187
             K S    LS++PS +  S   +  + +    +V     + G+V +V +    + IS  +
Sbjct: 1195 -KSSKKIALSLRPSKVMSSSLPVHDREISSLKEVKPNDIIRGFVRRVTDSGLFVAISHDI 1253

Query: 1188 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-----VLRP-FQDGI 1241
             A + + D     S L+E++  F   + V G V  ++ E+  L+L     VL P F+  I
Sbjct: 1254 TAYVRVSD--LSDSYLKEWKDSFQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPI 1311

Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
            + K            + EG IV G++ K+      +V+    ++ G  H +E+ +  V D
Sbjct: 1312 TLKD-----------LKEGQIVTGKVRKVEEFGAFIVIDGSSNISGLCHRSEMADKRVED 1360

Query: 1302 PLSGYDEGQFVKCKVLEI 1319
                YDEG  VK K+++I
Sbjct: 1361 ARKLYDEGDAVKAKIIKI 1378



 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/329 (38%), Positives = 208/329 (63%), Gaps = 28/329 (8%)

Query: 1617 GHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSF 1676
              TD A+  D ++     KK+K+ R+ EI+      L+ + P++  +FERL+   P+SS 
Sbjct: 1479 AQTDAAERSDSED--EGSKKKKKNRKAEIQVDRTGDLDANGPQSVADFERLLLGEPDSSL 1536

Query: 1677 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736
            +W++YMAF L + ++EKAR+IAERAL+TI + ++ EKLNIWVA  N+EN YG+  ++++ 
Sbjct: 1537 LWLQYMAFQLELGEIEKARAIAERALRTITMGQDAEKLNIWVALLNMENTYGD--DDSLE 1594

Query: 1737 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLL 1794
            +VF+RA QY +P++++  ++ +Y ++ +N+ A +L Y  +KK     S K +      L 
Sbjct: 1595 EVFKRACQYNEPQEIYERMISIYIQSGKNQKASDLFYAALKKKISSQSPKFFYNYASFLF 1654

Query: 1795 KQQQ--EGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPK 1850
                  +  +A++ RAL SLP H H++  S+ A LEF+  NG  +RGR++FEG+LS +PK
Sbjct: 1655 DTMASPDRARALLPRALQSLPAHTHVETTSKFAQLEFRSANGDVERGRTVFEGLLSSFPK 1714

Query: 1851 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLS--------------LPPKKMKFLFKKYL 1896
            R DLW++ LD EI++GD + +R LFER + L               + PK+ +FLFKK+L
Sbjct: 1715 RIDLWNVLLDLEIKVGDAEQVRRLFERVLGLQSSKKGPVTVDASKKVKPKQARFLFKKWL 1774

Query: 1897 EYEKSV----GEEERIEYVKQKAMEYVES 1921
             +E+ +    G+E+ +E VK +A+ YV+S
Sbjct: 1775 SFEEGLAAANGDEKMVEEVKARAVTYVKS 1803



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 184/419 (43%), Gaps = 53/419 (12%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   Q++S  +L + D +           GK  ++ LSL+ S +       L++E VQ 
Sbjct: 991  FFKAKQILSARILGVHDARNHKFLPISHRTGKYPVFELSLKPSYIKAANPAPLNMEQVQV 1050

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI------DVKPGLLLQGVVRS 286
            G     +V ++ D    ++   P+  G L   + +++  +      +   G  L+  V +
Sbjct: 1051 GSSWVGFVNNVADDCLWVNLS-PNVRGRLRFMDASDDLSLLTDMEKNFPIGSALKVQVTA 1109

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+      K    D   IS+ +++PG     RV  + E  +++       
Sbjct: 1110 VDAEKGHLNLSAK-QGYDKLAFGD---ISVGMILPG-----RVTKVTERQLIMQLGESLV 1160

Query: 347  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-- 404
            G V++  L + +   N    +N+++ + A ++ VD +S+ + L+L P  + + + P H  
Sbjct: 1161 GAVNLTDLADDYSKAN-PTVHNKNEVLRACVIAVDKSSKKIALSLRPSKVMSSSLPVHDR 1219

Query: 405  -------VKVGDIYDQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
                   VK  DI  +  V RV D GL + +    T     AYV +SD+++  +++ +  
Sbjct: 1220 EISSLKEVKPNDII-RGFVRRVTDSGLFVAISHDIT-----AYVRVSDLSDSYLKEWKDS 1273

Query: 457  YKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVVKGKVIAVDSFG 513
            ++    V+ ++      +G     LK S  +       T  D+K G +V GKV  V+ FG
Sbjct: 1274 FQPDQLVKGKVTFVDAEQGKLQLSLKESVLDPNFKAPITLKDLKEGQIVTGKVRKVEEFG 1333

Query: 514  AIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 568
            A +   G   +  LC    M++  +    K +  G  +  +++ +   SK+I+ + K +
Sbjct: 1334 AFIVIDGSSNISGLCHRSEMADKRVEDARKLYDEGDAVKAKIIKIDLDSKKISFSLKAS 1392


>gi|345490135|ref|XP_001599465.2| PREDICTED: protein RRP5 homolog [Nasonia vitripennis]
          Length = 1396

 Score =  233 bits (594), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 112/264 (42%), Positives = 180/264 (68%), Gaps = 3/264 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P+T D+F+RLV SSP+SS VW++YMA+ L   ++EKAR++A RAL+TIN REE+E+LN+W
Sbjct: 1128 PQTVDQFDRLVLSSPDSSLVWMQYMAYHLQATEIEKARAVARRALKTINFREEDERLNVW 1187

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
             A+ NLE+ +G    E++ +VFQ A++  D +KV+  +L ++    +    ++L   MI 
Sbjct: 1188 QAWLNLESRFGTA--ESLNEVFQEAVKTNDAQKVYTHMLTVHGDAGRQADLEKLTSAMIA 1245

Query: 1778 KFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
            KFK + + W+     LLK   ++  + ++QRAL SLP  KH+  + + A LE + G  +R
Sbjct: 1246 KFKQNPETWISCGTALLKIGMKDKSRHIMQRALQSLPATKHVDLLVRFAQLENRLGDKER 1305

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
             +++FE +L+ YPKRTD+WS Y+D  ++ GD+++ R + +RAI+  LPPKKMK LFKKY+
Sbjct: 1306 AQTLFEQVLTSYPKRTDVWSSYVDSLVKSGDIEIARKVLDRAITQGLPPKKMKVLFKKYI 1365

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVE 1920
            ++E   G  E +  +++ A++YVE
Sbjct: 1366 DFESKHGTPENVSRIQELAVKYVE 1389



 Score =  156 bits (394), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 221/920 (24%), Positives = 386/920 (41%), Gaps = 117/920 (12%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD----DLGS 109
           FPRGG   + +   +                  K+ K K KK   K N+T +    D G 
Sbjct: 6   FPRGGKKPVIKPSNNL---------------FSKRTKIKAKKPRSKPNKTKEVASTDDGP 50

Query: 110 LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---- 165
           L  +         A  + L ++  GM + G +  V +    + LPG +    +A D    
Sbjct: 51  LVANT--------AQNLRLSSLHEGMVIVGRIFRVTDYHAFVSLPGQISAKLQATDISDS 102

Query: 166 ---ALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLY 222
              +L  I  NE  + E   +  ++  G  V C V   + + K     K+ +SL   L+ 
Sbjct: 103 YTNSLKSIAKNEEISEEFKPMSDLYKEGDYVVCYVKSFNPNTK-----KVSVSLEPQLIN 157

Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA-ENSGIDVKPGLLLQ 281
           + L+  T+ +   +   + S+EDHGY+L  GL +F  FL   ++A E + + V  G  + 
Sbjct: 158 QSLNPGTLVKRSKVVLSISSVEDHGYVLETGLKNFRAFLSIKDIADEETKLFV--GKQII 215

Query: 282 GVVRSIDR-----TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
             V+ +       T KV   +   DTV   +T      S+D L+P    +  V+ +L+NG
Sbjct: 216 CAVKDVKTAENIYTAKVSIKTKHLDTVETNIT------SLDSLIPTAQFALTVKKVLKNG 269

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
           + + F     G ++  +LQN+       + + + +++   +L++ PT +    +L P   
Sbjct: 270 LQVEFGENSIGYINQLYLQNSL------DSFKKGQELVGTLLYIVPTVKFGYFSLLP--- 320

Query: 397 HNRAPPSHVKVGDIYDQSKVVRVD-RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
              A    + +GD+  ++K V  D RG+ L L           YV +    E +  K++ 
Sbjct: 321 -QEAEQKLLAIGDVITKAKFVSKDSRGIILQLK-----KGIQGYVPLKR-TEVQFEKIDS 373

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
            + + S  + +IL +  +  +    ++    E  V   + ++PG VV+ K+  +   G I
Sbjct: 374 VFTKNSIHKCKILAYDSIARVYICSMEKKVIEKTVVNKTILQPGHVVEVKITKIKKNGYI 433

Query: 516 VQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAELVFRVLGVKSKRITVTHKKTLVKSK 573
               G      P   +S+     PG K  FKVG  +  RVL    K I  T KK+L++SK
Sbjct: 434 SVSSGTRNGFVPADQVSD-----PGYKATFKVGQNVTARVLETSVKNI-FTLKKSLIESK 487

Query: 574 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
           L IL    +A    +  G +++I   G  +RF++GV+GF P+  L  +      +M  VG
Sbjct: 488 LPILCKMEDAKADAVHDGTVSRITDAGILIRFFDGVKGFIPKKFLNNNTASAKWNMV-VG 546

Query: 634 QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
           Q V   I        ++ LS ++K  + +++   K+G +V G+V   +   V + +  K 
Sbjct: 547 QTVSTVIKDVDVRETKLILS-LVKGAK-AQNTKFKIGDVVEGIVTDSSAEGVQLRL--KN 602

Query: 694 YSKGTIPTEHL-ADHLEHATVMKSVIKPGYEFDQLL----VLDNESSNLLLSAKYSLINS 748
           Y +   PT +L A H+           P YE  +LL    V     + ++ S   +LI S
Sbjct: 603 YGEEA-PTAYLPAGHMS----------PCYEVGKLLASKTVAGESVTAIVFSTMPTLILS 651

Query: 749 AQQLPSDASHIH---PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
               P     IH   P   V   V  I +    V+ L  L   + +   V    A   ++
Sbjct: 652 TTFAPEKTYKIHDLKPEDTVMCSVKKIHKES--VKVLMPLVK-SSKFGTVPAASAGNIES 708

Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQS----CCSSTDASFMQEHFLLE---EKIAMLQS 858
            Y  Q +   +  +  ++  I+L+ + S      S  D   M    +L     K+  L  
Sbjct: 709 MYENQILIGKVTRIEKDSQEISLTTQLSKVWKSVSEHDVKMMTAVDVLSSYLNKVTELSR 768

Query: 859 SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGS 918
           + +  S  K +    IG  I+G V    D G+++  E  ++V G +      G  V  G 
Sbjct: 769 NVYYTS--KPISKLSIGQRIKGSVESVMDHGLILKLE--NNVKGIVRTSHFTGNVV-PGQ 823

Query: 919 VIQAAILDVAKAERLVDLSL 938
            ++ ++L +      V+L+L
Sbjct: 824 KVEGSVLWINYPHEYVELTL 843


>gi|361124585|gb|EHK96666.1| putative rRNA biogenesis protein rrp5 [Glarea lozoyensis 74030]
          Length = 1525

 Score =  232 bits (592), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/281 (41%), Positives = 183/281 (65%), Gaps = 7/281 (2%)

Query: 1644 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            EI+      L+ + P++  +FERL+   P+SS +WI+YMAF + ++++ KAR +AERA++
Sbjct: 1239 EIKIDRTGDLDANGPQSVADFERLLLGQPDSSQLWIQYMAFQMQLSELSKAREVAERAIK 1298

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
            +INIREE EK+N+W+A  NLE+ YG+  +E+V +VF+RA QY DP+++H  L  ++ ++ 
Sbjct: 1299 SINIREETEKMNVWIALINLESAYGS--DESVDEVFKRACQYNDPQEIHERLASIHIQSG 1356

Query: 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFI 1821
            +   AD+L   +IKKF  S  VW      L+      +  +A++ RA  SLP H H+   
Sbjct: 1357 KLDKADDLFQIIIKKFSQSPNVWYNYAHFLMTSLSSPDRARALLPRATQSLPPHTHLALT 1416

Query: 1822 SQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879
             + A LEF +  G A+RGR+MFEG+LS +PKR D+W+  LD EI+ GD D+IRG+FER  
Sbjct: 1417 LKFAALEFHSEAGSAERGRTMFEGLLSTFPKRLDIWNQLLDLEIQQGDKDIIRGVFERVT 1476

Query: 1880 -SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
             +  + PK  K  F+++ E+E+  G+ +  E VK KA E+V
Sbjct: 1477 RTKGIKPKGAKAWFRRWSEWEEGNGDAKSQERVKAKAEEWV 1517



 Score =  193 bits (491), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 175/638 (27%), Positives = 305/638 (47%), Gaps = 56/638 (8%)

Query: 238 AYVKSIEDHGYILHFGLPSFT--GFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVV 294
           A V S+EDHG ++  GL   T  GF+    + + + +  V+ G +   +V  +    K+V
Sbjct: 2   AAVSSVEDHGLVMDLGLEDTTVKGFMSSKEIGKGTELSKVQEGAVYLSMVTGLSSNGKIV 61

Query: 295 YLSSDPDTVSKCVTKDLKGIS----IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 350
            LS+D   ++   TK L  +S    ID  +PG  V   V  +   GV+   +     T+D
Sbjct: 62  KLSADTQKIAN--TKKLSYLSEAPTIDAFMPGTAVEILVTDVTARGVIGKVMGMVDVTID 119

Query: 351 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS-----------RAVGLTLNPYLLHN- 398
           + H     P  + +  Y    K+  R++   PT+             +G++L   +++  
Sbjct: 120 LIHSGAALPGKDLEKKYKLGSKIKGRVICNFPTADPPKLGVSLLDHVIGMSLQQAVVNGE 179

Query: 399 -RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK-- 455
            + P   + +  I ++  V +V+ G GL +D+    +S   +V IS V + ++  L +  
Sbjct: 180 KKQPLDVLPLSAILEEVVVRKVEAGHGLFVDVGVKGLS--GFVHISRVKDGKIETLSEVS 237

Query: 456 -KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDS- 511
             YK GS  R R++G+  ++G     L+AS  E       D+K G  VKG +  I V++ 
Sbjct: 238 GAYKLGSTHRGRVIGYNSIDGTFLLSLEASILEQPFLNIEDLKIGETVKGTIEKIVVNAK 297

Query: 512 --FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK-SKR-ITVTHKK 567
              G +V    G+  L P  HM++ +++ P KKFK G  +  RVL    SKR + +T KK
Sbjct: 298 GVGGVLVNLAEGISGLVPEAHMADVKLLHPEKKFKEGMAVTCRVLSTDPSKRQVRLTLKK 357

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
           +LV S+ A   SY +    + + G I  + + G  V+FY  ++GF P +E+      +P+
Sbjct: 358 SLVNSEAAPFVSYEDIEVGMQSPGTIINVLQAGAVVQFYGSIRGFLPVAEMSEAYIQDPT 417

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR---VSEDDL--VKLGSLVSGVVDVVTP 682
             + +GQVV   +    P ++++ +S    PT      +  L  +K+G +VS +V   + 
Sbjct: 418 QHFRIGQVVNVHVTKVDPETQKMTVS-CKDPTTFGLAQQTALKNLKVGEIVSALVTEKSS 476

Query: 683 NAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDN-ESSNL-L 738
           + + + +  +   + T+   HL D    ++A+  K  I+ G +   L VL+  ES  L L
Sbjct: 477 DDISLEIEGQSL-RATLSLSHLTDGSSSKNASAFKK-IRVGQKLTDLAVLEKLESKRLVL 534

Query: 739 LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD 796
           L+ K SLI +++   L      +  + +VHG+V NI  T  F++F G LTG  P+SK   
Sbjct: 535 LTNKPSLIKASKDRTLLRSIEDVKVDKIVHGFVKNITPTAAFIQFGGGLTGLLPKSKL-- 592

Query: 797 GQRADLSKTYYVG----QSVRSNILDVNSETGRITLSL 830
               D++     G    Q+ +  ++ V+ E G   LS+
Sbjct: 593 --PKDMASLDDFGLKKFQAAQVKVISVDREQGTFVLSM 628



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 187/840 (22%), Positives = 327/840 (38%), Gaps = 135/840 (16%)

Query: 187  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKG----LSLETVQEGMVLTAYVKS 242
            F  G  V+C VL  D       KR++ L+L+ SL+       +S E ++ GM     + +
Sbjct: 331  FKEGMAVTCRVLSTDP-----SKRQVRLTLKKSLVNSEAAPFVSYEDIEVGMQSPGTIIN 385

Query: 243  IEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGLLLQGVVRSID-RTRKVVYLS 297
            +   G ++ F   S  GFLP   ++E    D     + G ++   V  +D  T+K+    
Sbjct: 386  VLQAGAVVQF-YGSIRGFLPVAEMSEAYIQDPTQHFRIGQVVNVHVTKVDPETQKMTVSC 444

Query: 298  SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL-TYFTGTVDIFHLQN 356
             DP T        LK + +     G +VS  V     + + L         T+ + HL +
Sbjct: 445  KDPTTFGLAQQTALKNLKV-----GEIVSALVTEKSSDDISLEIEGQSLRATLSLSHLTD 499

Query: 357  TFPTTN---WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQ 413
               + N   +K      K  +  +L    + R V LT  P L+  +A      +  I D 
Sbjct: 500  GSSSKNASAFKKIRVGQKLTDLAVLEKLESKRLVLLTNKPSLI--KASKDRTLLRSIED- 556

Query: 414  SKVVRVDRGL-GLLLDIPSTPVSTPAYVTI----------SDVAEEEVRKLEKKYKEGSC 462
               V+VD+ + G + +I  TP  T A++            S + ++     +   K+   
Sbjct: 557  ---VKVDKIVHGFVKNI--TP--TAAFIQFGGGLTGLLPKSKLPKDMASLDDFGLKKFQA 609

Query: 463  VRVRILGFRHLEGLATGIL---------KAS--AFEGLVFTHSDVKP------------- 498
             +V+++     +G  T +L         KAS     G   T   V P             
Sbjct: 610  AQVKVISVDREQG--TFVLSMTDMSEDSKASQQPVAGEALTGDVVNPVDESITSMQNFDI 667

Query: 499  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-SEFEIVK----PGKKFKVGAELVFRV 553
            G + K +V++V      VQ    V+    +  +   +E +K    P KKF     L  RV
Sbjct: 668  GRLTKARVVSVKDTQINVQLADNVQGRIDVSQVFDSWEEIKDRKKPLKKFSAKQILDVRV 727

Query: 554  LGVKSKR----ITVTHK--KTLVKSKLAILSSYAEATDRLIT-------HGWIT---KIE 597
            LG+   R    + ++H+  K++V    A  S   E T   +T         WI     I 
Sbjct: 728  LGMHDARNHRFLPISHRVGKSVVFELSAKPSDQVETTQEPLTLDKVKKGSAWIAFINNIT 787

Query: 598  KHGCFVRFYNGVQGFAPRSELGLDPG--CEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
             +  +V     V+G     E+  D     +  S + VG  ++ R+ +   ++ R++LS  
Sbjct: 788  DNCAWVNLSPNVRGRISLMEMSDDVSRLKDVESNFPVGSAIRARVTNVDASNNRLDLSAR 847

Query: 656  MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
             +P        +  G ++ G V   T   ++V  +A G + G +    LAD    A   K
Sbjct: 848  SQPAEKLTLQTLSEGMVLPGKVTRSTERQILVE-LADGLA-GPVHLPDLADDFSQADPTK 905

Query: 716  SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYV 769
               K       ++ +D  +    LS + S +  +  LP      +  S +  N VV G+V
Sbjct: 906  -YTKNDIVRVCVVSVDLPNKRFRLSTRPSRVLDS-SLPVEDPEFTSISQLKANDVVRGFV 963

Query: 770  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             ++ + G FV   G LT F   S   D    D    + V Q V+  I  V++   +I +S
Sbjct: 964  KSVAKMGLFVNIGGNLTAFVRVSDLSDSYIKDWQSEFEVDQLVKGKITQVDANLNQIQMS 1023

Query: 830  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
            LK        +S + ++++     A L                 +G ++ GK+ +  DFG
Sbjct: 1024 LK--------SSVLDKNYVAPITFADLS----------------VGQIVTGKIRKVEDFG 1059

Query: 890  VVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVDLSLKTVF 942
            V +  +   +V G     ++A   V       E G  ++A ++ +   ++ + L LK  +
Sbjct: 1060 VFIVLDNSMNVSGLCHQSEMADKRVHDVKKLYEEGDAVKAKVIKIDSEKKRISLGLKAKY 1119


>gi|50554347|ref|XP_504582.1| YALI0E30217p [Yarrowia lipolytica]
 gi|49650451|emb|CAG80186.1| YALI0E30217p [Yarrowia lipolytica CLIB122]
          Length = 1567

 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 112/270 (41%), Positives = 178/270 (65%), Gaps = 5/270 (1%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L    P++  ++ERL+  +PNSS +WI YM+F++ ++++EKAR IA+RAL+TI+ R+E+E
Sbjct: 1284 LSTATPQSVGDYERLLVGNPNSSVLWISYMSFVMQLSELEKAREIAQRALKTISYRDEDE 1343

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLN+W+A  NLEN +G P  E+  K F+ A QY D + +++ +  +Y  +++   ADE+ 
Sbjct: 1344 KLNVWLALLNLENTFGTP--ESTDKTFKDAAQYMDAETIYMKMADIYAASDKKDKADEVY 1401

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
             K +KKF  S + W++    L   +Q    + ++ RA  +LP+  H++   + A LE+K+
Sbjct: 1402 AKAVKKFSGSMEAWIKYATFLFDNEQAAKGRVLLDRATKALPKRDHLQCAIKFAQLEYKS 1461

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAISL-SLPPKKMK 1889
            G A+RGR++ EG++S YPKRTDLWS ++D EI+ G D   I  LFER ++L  L  K+ K
Sbjct: 1462 GDAERGRTLLEGLVSVYPKRTDLWSQFVDFEIKYGQDKTKIEALFERVVALPKLSLKQAK 1521

Query: 1890 FLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
            F FKK+ +YE    +++  EYVK KA +YV
Sbjct: 1522 FFFKKWYQYEVESDDDKAAEYVKAKAADYV 1551



 Score =  115 bits (287), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 171/728 (23%), Positives = 300/728 (41%), Gaps = 89/728 (12%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
           ++L NIS G  + G +  +     V+ LP  L G       +   L+ +IE  E+  L  
Sbjct: 86  LSLDNISVGSIILGRIVNIQSTACVVSLPNNLHGFVSCVQ-VSEALNAKIEEGEEFDLSD 144

Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
               GQ V   V+  D   K +G     LSL    + + +    +   M L   VKS ED
Sbjct: 145 YVKEGQWVRASVV--DTSNKRLG-----LSLLPKDVNRDIEDSDIDANMALQVEVKSKED 197

Query: 246 HGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSK 305
            GY++  G+    GF+   ++  N G      ++L  V+R   RT     ++ D +   +
Sbjct: 198 KGYVVATGIKGKKGFIKDTDVELNKG-----QIVLACVLRISGRT-----ITLDTEHTGE 247

Query: 306 CVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKN 365
            V + L+  S    V G  V+        NG ++S       T+D F  Q +F       
Sbjct: 248 AV-RQLEDFS--SAVAGTPVTVVTTDKRNNGAVVSVFGSVDATIDPF--QGSF------- 295

Query: 366 DYNQHKKVNARILFV---DPTSRAVGLTLNPYLLH-NRAPPSHVKVGDIYDQSKV--VRV 419
              +     AR++       + + + L+  P++++   A P   ++G+ +   +V  V+V
Sbjct: 296 GLEEKTSSVARVVATLDRGASGKRMLLSALPHVVNLEDADP---RIGEAFLPGQVLGVKV 352

Query: 420 DRGL--GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLA 477
              +  GL +++     + P ++ IS +A+E+       Y+ G  +  RI+ F   + + 
Sbjct: 353 THVVQHGLFVELAE---NIPGFIHISKLADEKTDST-ADYEVGQTLDARIIAFAPQDEMY 408

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIA-VDSFGAIVQFPGGVKALCPLPHMSEFEI 536
               + S  +      SD+  G  V+G V   +   G IV     + A+ P  H+ + ++
Sbjct: 409 VLSCEQSVMDAKYIATSDLSAGDKVEGTVTRHLPKGGIIVALSSFITAVVPAAHLVDAKM 468

Query: 537 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA-EATDRLITHGWITK 595
             P  KFK+G+++  R+LGV S    +T KK+L         SYA E  D  I  G +  
Sbjct: 469 ANPELKFKIGSKIKGRLLGVDSSGCRMTIKKSLYNLPKDDFISYASEIGD--IGSGTVVN 526

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           ++  GC V F++  Q + P  E+      + +    VGQ VK RI+   P  + + +S  
Sbjct: 527 VKPGGCVVEFWDNSQAWLPAGEVSEAFIADITKHCRVGQTVKIRILDINPEKQSMQVS-- 584

Query: 656 MKPTRVSEDDL------VKLGSLVSGVV-----DVVTPNAVVVYVIAKGYSKGTIPTEH- 703
            K ++V+ + +      + LG LV+G +     D V    V    +     +  +P  H 
Sbjct: 585 CKLSKVAAEHVSGAYEGISLGDLVTGKIIDKRGDFVIEMTVGDVDLTGVVPRNLLPPSHK 644

Query: 704 ---LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
              + D LE   + K   +P              S++ L A   +I              
Sbjct: 645 KLRVGDKLECVVLAK---QPWM------------SSMTLGAHPDIIKGYHNKTLIKETPS 689

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
               V G+V N+ + G FV F G + G AP++   D        +Y   Q V+  +  VN
Sbjct: 690 VGQTVTGWVQNVNQHGVFVSFAG-VVGLAPQASLSD-------DSYDKFQVVKGRVTSVN 741

Query: 821 SETGRITL 828
            +   +++
Sbjct: 742 GDKFAVSI 749



 Score = 73.9 bits (180), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 20/249 (8%)

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           +T + +HG FV     + GF   S+L  D   + ++ Y VGQ +  RI++  P      L
Sbjct: 352 VTHVVQHGLFVELAENIPGFIHISKLA-DEKTDSTADYEVGQTLDARIIAFAPQDEMYVL 410

Query: 653 SF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
           S    +M    ++  DL   G  V G V    P   ++  ++  +    +P  HL D   
Sbjct: 411 SCEQSVMDAKYIATSDL-SAGDKVEGTVTRHLPKGGIIVALSS-FITAVVPAAHLVDAKM 468

Query: 710 HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSV 764
               +K   K G +    L L  +SS   ++ K SL N    LP D     AS I    +
Sbjct: 469 ANPELK--FKIGSKIKGRL-LGVDSSGCRMTIKKSLYN----LPKDDFISYASEI--GDI 519

Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
             G V N+   GC V F      + P  +  +   AD++K   VGQ+V+  ILD+N E  
Sbjct: 520 GSGTVVNVKPGGCVVEFWDNSQAWLPAGEVSEAFIADITKHCRVGQTVKIRILDINPEKQ 579

Query: 825 RITLSLKQS 833
            + +S K S
Sbjct: 580 SMQVSCKLS 588



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 163/796 (20%), Positives = 321/796 (40%), Gaps = 162/796 (20%)

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGF--------APRSKAVDGQRADLSKTYYVG 809
            +I   S++ G + NI  T C V     L GF        A  +K  +G+  DLS     G
Sbjct: 90   NISVGSIILGRIVNIQSTACVVSLPNNLHGFVSCVQVSEALNAKIEEGEEFDLSDYVKEG 149

Query: 810  QSVRSNILDVNSETGRITLSL-KQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
            Q VR++++D +++  R+ LSL  +      + S +  +  L+ ++     SK +      
Sbjct: 150  QWVRASVVDTSNK--RLGLSLLPKDVNRDIEDSDIDANMALQVEV----KSKED------ 197

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 928
             +G+++ + I+GK                    GFI    +    +  G ++ A +L + 
Sbjct: 198  -KGYVVATGIKGK-------------------KGFIKDTDV---ELNKGQIVLACVLRI- 233

Query: 929  KAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVL 988
                    S +T+ +D      + RQ +       +S   G   TV  +    + N  V+
Sbjct: 234  --------SGRTITLDTEHTGEAVRQLEDF-----SSAVAGTPVTV--VTTDKRNNGAVV 278

Query: 989  SLPEYNHSIGYASVSDYNTQKFPQKQFLNGQ-SVIATVMALPSSSTAGRLLLLLKAISET 1047
            S+        + SV D     F     L  + S +A V+A      +G+ +LL  A+   
Sbjct: 279  SV--------FGSV-DATIDPFQGSFGLEEKTSSVARVVATLDRGASGKRMLL-SALPHV 328

Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
                    +   ++  G ++  ++T +    L ++      G IHI+++ D+K++     
Sbjct: 329  VNLEDADPRIGEAFLPGQVLGVKVTHVVQHGLFVELAENIPGFIHISKLADEKTDST--- 385

Query: 1108 FSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1167
             +++++GQT+ ARIIA + + +M     + LS + S++    I +       D+S G +V
Sbjct: 386  -ADYEVGQTLDARIIAFAPQDEM-----YVLSCEQSVMDAKYIAT------SDLSAGDKV 433

Query: 1168 TGYVYKVDNEWALLTISRHL-KAQLFILDSAY----------EPSELQEFQRRFHIGKAV 1216
             G            T++RHL K  + +  S++            +++   + +F IG  +
Sbjct: 434  EG------------TVTRHLPKGGIIVALSSFITAVVPAAHLVDAKMANPELKFKIGSKI 481

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE-GDIVGGRISKILSGVG 1275
             G +L ++      R+ ++           ++  D+  ++  E GDI  G +  +    G
Sbjct: 482  KGRLLGVDSSG--CRMTIKK-------SLYNLPKDDFISYASEIGDIGSGTVVNVKP--G 530

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G VV+   +    +   E+    ++D       GQ VK ++L+I+   + +  V   L  
Sbjct: 531  GCVVEFWDNSQAWLPAGEVSEAFIADITKHCRVGQTVKIRILDINPE-KQSMQVSCKLSK 589

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
                  S     +S      GK ++K  D     +++  V +V   G            V
Sbjct: 590  VAAEHVSGAYEGISLGDLVTGKIIDKRGDF----VIEMTVGDVDLTG------------V 633

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV-----TLKTSDSRTASQSEIN 1450
            +  NL    +    K+  +G  +   VL+ +P    + +      +K   ++T  +    
Sbjct: 634  VPRNL----LPPSHKKLRVGDKLECVVLAKQPWMSSMTLGAHPDIIKGYHNKTLIK---- 685

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
                  VG  V G ++ V  +G+F++     +VGL   + LS+D  D  +        VK
Sbjct: 686  --ETPSVGQTVTGWVQNVNQHGVFVSF--AGVVGLAPQASLSDDSYDKFQV-------VK 734

Query: 1511 VKILKVDKEKRRISLG 1526
             ++  V+ +K  +S+G
Sbjct: 735  GRVTSVNGDKFAVSIG 750



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 127/271 (46%), Gaps = 27/271 (9%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            G ++G +++ ++    GL V++  ++ G +H ++L +   +D  + Y+ GQ +  ++  I
Sbjct: 345  GQVLGVKVTHVVQH--GLFVELAENIPGFIHISKLAD-EKTDSTADYEVGQTLDARI--I 399

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
            +   +   +V LS   S+       +SDLS          +K+E      + +G      
Sbjct: 400  AFAPQDEMYV-LSCEQSVMDAKYIATSDLSAG--------DKVEGTVTRHLPKG------ 444

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
              G  + LS  + A V  ++L D  + +PE +F IG  + GR+L V+  S    +T+K S
Sbjct: 445  --GIIVALSSFITAVVPAAHLVDAKMANPELKFKIGSKIKGRLLGVD--SSGCRMTIKKS 500

Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
                     I+  S   +GDI  G +  V+  G  +   + +   L    E+SE  + +I
Sbjct: 501  LYNLPKDDFISYAS--EIGDIGSGTVVNVKPGGCVVEFWDNSQAWL-PAGEVSEAFIADI 557

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
                R G+ VK++IL ++ EK+ + +  K S
Sbjct: 558  TKHCRVGQTVKIRILDINPEKQSMQVSCKLS 588



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 6/182 (3%)

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
            E   P  ++   V +V   G F+ L+  +   + +S L+D   +S   ++ +G+ +  R+
Sbjct: 340  EAFLPGQVLGVKVTHVVQHGLFVELAENIPGFIHISKLADEKTDS-TADYEVGQTLDARI 398

Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1482
            ++  P  +   ++ + S       ++    S+L  GD V G + R    G  I   ++ +
Sbjct: 399  IAFAPQDEMYVLSCEQS----VMDAKYIATSDLSAGDKVEGTVTRHLPKGGIIVALSSFI 454

Query: 1483 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1542
              +   + L +  + N E  ++ G K+K ++L VD    R+++  KS Y     D +  +
Sbjct: 455  TAVVPAAHLVDAKMANPELKFKIGSKIKGRLLGVDSSGCRMTI-KKSLYNLPKDDFISYA 513

Query: 1543 SE 1544
            SE
Sbjct: 514  SE 515


>gi|198413904|ref|XP_002123749.1| PREDICTED: similar to Protein RRP5 homolog (Programmed cell death
            protein 11) [Ciona intestinalis]
          Length = 1581

 Score =  231 bits (590), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 160/575 (27%), Positives = 293/575 (50%), Gaps = 41/575 (7%)

Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
            E + D++   +  G ++ + + G  + +  +   K+  +++SD +++   K F +G+++ 
Sbjct: 1027 EDVCDIAVGHVTNGEIREIVADGALVRMELRGKGKIFSTDISDEFLDGMLKNFRVGQIIR 1086

Query: 1420 GRVLSVEP----LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1475
             RV+        L+ R  +  +  D     + +I +++++    I  G IK     G+F+
Sbjct: 1087 CRVIGRSNEGFVLTMRKSLMHEICDLEPVDR-DICDITDVKPKQIFRGIIKVCSESGIFV 1145

Query: 1476 TIENT--NLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM----- 1527
            T+       V   + S+    DH + I+  Y  G  V   ++ V  +  R+ L M     
Sbjct: 1146 TLSRCVHGRVTFANASKFYISDHTEAIKIFY-PGRIVHCCVISVSPQDGRVELSMLERDT 1204

Query: 1528 KSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQ 1587
                  ND +   +  + + +E   +        L      +V+++  +SE         
Sbjct: 1205 GHCDIINDENRFPLRLKRKREETKTQQKKKKTRILKSAPKSSVENLIKQSEFK------- 1257

Query: 1588 IESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRA 1647
             E    V     + D  +P             D+  TID      + K++    + EI  
Sbjct: 1258 -EDNIKVATTVGDCDVIEPGF---------VWDDDVTID------SNKEDIMTTDNEI-C 1300

Query: 1648 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1707
            ++ ++ + + P +  E+E+L+    N S +WI++MAF L   ++EKAR++AE++L  I+ 
Sbjct: 1301 SKRKVNDDNPPESAVEWEKLLLLHHNESMLWIRFMAFHLRSREIEKARNVAEKSLTLIDR 1360

Query: 1708 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1767
              ENE+LNIW A  NLEN YG   +  + +  +RAL+  D  KV+  ++ +YE + + + 
Sbjct: 1361 SAENERLNIWSALLNLENNYG--CDVTMKQTMERALKCSDQLKVYFRVVKIYEESGKKEK 1418

Query: 1768 ADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAI 1826
            A E+L KM  KF+ + +VWL  ++  +++   +  Q  ++R LLSLP+ ++++ IS+ A 
Sbjct: 1419 AGEMLEKMTNKFRQNKEVWLAHIRHQMEESHYKEAQESLKRCLLSLPKKQNLEIISKFAQ 1478

Query: 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886
            +EF  G A+RGR+MFE IL  Y KRTD+WSIY+D  ++ G  D  R +F R  SLSL  K
Sbjct: 1479 MEFTLGEAERGRTMFENILENYRKRTDIWSIYVDALVKAGMYDAARDVFNRVTSLSLSSK 1538

Query: 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            KMK  +++++E+E   G ++  + VK+KA++Y ES
Sbjct: 1539 KMKTFYRRFVEFETKHGNDDDAKIVKEKALKYAES 1573



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 177/367 (48%), Gaps = 32/367 (8%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           K S  +     + D+ PG +V+ K+  V   G  V                   ++  GK
Sbjct: 8   KRSVLDAKYLRYEDIIPGTLVQCKITQVQQKGLQV-------------------VLGSGK 48

Query: 542 K-FKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
           K F  G  +  RVL   +KR  + +THK++LV SKL I+++Y       + HG+I+ I+ 
Sbjct: 49  KIFNEGNVIRCRVLTSSAKRRHLHLTHKQSLVGSKLPIVTNYDVIKRDDVIHGFISNIKP 108

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMK 657
            GCFV+FY+ V GF P  +L   P   P  ++ +GQVVKCR++S+   ++++ LSF  M 
Sbjct: 109 FGCFVKFYDDVTGFVPHHQLSATPVQNPQKLFFIGQVVKCRVISNDAGNKKLKLSFRTMN 168

Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE-----HLADHLEHAT 712
             RV E + VK G +V+  V +   + + V ++     +   PT       L+D +E + 
Sbjct: 169 EKRVVEHN-VKPGMMVNVKVIMKEQSHLSVKIMGDESEQSDWPTAMISQYQLSDFVEISR 227

Query: 713 VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 772
            + ++++     +  +V+  +   + +S K+SL+     L  D   +    ++  +V  I
Sbjct: 228 SIFTLVREETVLNDCIVVATK-QQIQVSRKHSLVERG--LKVDFCDLIIGQLLRCFVRQI 284

Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
              G FV  +G L G  P+S   D   AD++  +  GQSV + +  +  +  R  +SL+ 
Sbjct: 285 TSYGVFVETVGGLVGLCPKSAICDKYLADVNDRFITGQSVVAVVTGIEDDRKRFLVSLRL 344

Query: 833 SCCSSTD 839
           S C   D
Sbjct: 345 SQCPLID 351



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 167/393 (42%), Gaps = 54/393 (13%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGI-----GFH--GRIHITEVNDD-KSNVVENLFSNFKIG 1114
            VGS V+ E+  I+     +K        G H  GRIH +EV ++ K NV  +  +N K+G
Sbjct: 852  VGSKVRGEVASIRATTAIVKLTSLPIVHGHHQVGRIHASEVFEECKQNV--SPMNNLKVG 909

Query: 1115 QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1174
             T++  +I   +   M   FL E++ + +   V E+           S+ + V     K+
Sbjct: 910  DTISCTVIGVRDV--MTHRFL-EITNRKATRGVIEL-----------SLWRSVPPPGDKI 955

Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS--INKEKKLLRL 1232
            D E+           ++      + P  L     +   GK   G  +   + K    +  
Sbjct: 956  DAEFPFDRSRESYLVEVRPGVRGFIPKLLAMDGGKMGQGKMKQGRCVECIVVKHGDPIMF 1015

Query: 1233 VLR-PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHF 1291
              R    +G+ +   DI+          G +  G I +I++   G +V++     G++  
Sbjct: 1016 ACRGALTNGVGEDVCDIA---------VGHVTNGEIREIVAD--GALVRMELRGKGKIFS 1064

Query: 1292 TELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTD 1351
            T++ +  +   L  +  GQ ++C+V  I R+  G     L++R SL  M          D
Sbjct: 1065 TDISDEFLDGMLKNFRVGQIIRCRV--IGRSNEGFV---LTMRKSL--MHEI------CD 1111

Query: 1352 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1411
            ++   + +  I D+ P  I +G +K  +  G F+ LSR +  +V  +N S  Y+    + 
Sbjct: 1112 LEPVDRDICDITDVKPKQIFRGIIKVCSESGIFVTLSRCVHGRVTFANASKFYISDHTEA 1171

Query: 1412 FPI---GKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
              I   G++V   V+SV P   RVE+++   D+
Sbjct: 1172 IKIFYPGRIVHCCVISVSPQDGRVELSMLERDT 1204



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 17/137 (12%)

Query: 1306 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1365
            ++EG  ++C+VL  S   R   H+ L+ + SL G    +   + T+ D           +
Sbjct: 51   FNEGNVIRCRVLTSSAKRR---HLHLTHKQSLVG----SKLPIVTNYDV----------I 93

Query: 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1425
              + ++ G++ N+   GCF+     +   V    LS   V++P+K F IG++V  RV+S 
Sbjct: 94   KRDDVIHGFISNIKPFGCFVKFYDDVTGFVPHHQLSATPVQNPQKLFFIGQVVKCRVISN 153

Query: 1426 EPLSKRVEVTLKTSDSR 1442
            +  +K+++++ +T + +
Sbjct: 154  DAGNKKLKLSFRTMNEK 170



 Score = 49.3 bits (116), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 167/395 (42%), Gaps = 61/395 (15%)

Query: 474  EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP---- 529
            + L  G ++ S+ +   F   D+  G  V+G+V ++ +  AIV+       L  LP    
Sbjct: 828  KNLLLGKIQESSSDVGDFPFLDISVGSKVRGEVASIRATTAIVK-------LTSLPIVHG 880

Query: 530  -------HMSE-FEIVK----PGKKFKVGAELVFRVLGVKS----KRITVTHKK-TLVKS 572
                   H SE FE  K    P    KVG  +   V+GV+     + + +T++K T    
Sbjct: 881  HHQVGRIHASEVFEECKQNVSPMNNLKVGDTISCTVIGVRDVMTHRFLEITNRKATRGVI 940

Query: 573  KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
            +L++  S     D++       +  +    V    GV+GF P+  L +D G         
Sbjct: 941  ELSLWRSVPPPGDKIDAEFPFDR-SRESYLVEVRPGVRGFIPKL-LAMDGGKMGQGKMKQ 998

Query: 633  GQVVKCRIM---SSIPASRRINLSFMMKPTRVSEDDL-VKLGSLVSGVVDVVTPNAVVVY 688
            G+ V+C ++     I  + R  L+       V ED   + +G + +G +  +  +  +V 
Sbjct: 999  GRCVECIVVKHGDPIMFACRGALT-----NGVGEDVCDIAVGHVTNGEIREIVADGALVR 1053

Query: 689  VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL---VLDNESSNLLLSAKYSL 745
            +  +G  KG I +  ++D       +  ++K  +   Q++   V+   +   +L+ + SL
Sbjct: 1054 MELRG--KGKIFSTDISDEF-----LDGMLK-NFRVGQIIRCRVIGRSNEGFVLTMRKSL 1105

Query: 746  INSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFL----GRLTGFAPRSKAV 795
            ++    L        D + + P  +  G +    E+G FV       GR+T FA  SK  
Sbjct: 1106 MHEICDLEPVDRDICDITDVKPKQIFRGIIKVCSESGIFVTLSRCVHGRVT-FANASKFY 1164

Query: 796  DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
                 +  K +Y G+ V   ++ V+ + GR+ LS+
Sbjct: 1165 ISDHTEAIKIFYPGRIVHCCVISVSPQDGRVELSM 1199



 Score = 43.9 bits (102), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            VG +   EI EI      ++  +   G+I  T+++D+    ++ +  NF++GQ +  R+I
Sbjct: 1034 VGHVTNGEIREIVADGALVRMELRGKGKIFSTDISDE---FLDGMLKNFRVGQIIRCRVI 1090

Query: 1123 AKSNKP---DMKKSFLWELS-IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEW 1178
             +SN+     M+KS + E+  ++P    + +I         DV   Q   G +       
Sbjct: 1091 GRSNEGFVLTMRKSLMHEICDLEPVDRDICDI--------TDVKPKQIFRGIIKVCSESG 1142

Query: 1179 ALLTISRHLKAQL-FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
              +T+SR +  ++ F   S +  S+  E  + F+ G+ V   V+S++ +   + L +   
Sbjct: 1143 IFVTLSRCVHGRVTFANASKFYISDHTEAIKIFYPGRIVHCCVISVSPQDGRVELSMLER 1202

Query: 1238 QDGISDKTVDISND 1251
              G      DI ND
Sbjct: 1203 DTG----HCDIIND 1212


>gi|68466849|ref|XP_722620.1| hypothetical protein CaO19.1578 [Candida albicans SC5314]
 gi|68467128|ref|XP_722479.1| hypothetical protein CaO19.9151 [Candida albicans SC5314]
 gi|46444457|gb|EAL03732.1| hypothetical protein CaO19.9151 [Candida albicans SC5314]
 gi|46444607|gb|EAL03881.1| hypothetical protein CaO19.1578 [Candida albicans SC5314]
          Length = 1722

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/280 (41%), Positives = 178/280 (63%), Gaps = 13/280 (4%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1443 LNTRAPQSTADFERLLIGNPNSSILWMNYMSFQLQLSEVDKAREIGERALKTINYREEQE 1502

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLNIW+A  NLEN +G   +E++   F++++QY D   +H  L+ +Y+ +E+   A +L 
Sbjct: 1503 KLNIWIALLNLENTFG--TDESLEDTFKKSIQYMDSFTMHEKLVNIYKMSEKFDQAKQLF 1560

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
             +M KKF      W+     LL Q  Q+ +  ++ +AL  LP+ +HI+ + + A LEF+ 
Sbjct: 1561 NRMTKKFGKVLNTWVLYGSFLLDQNSQDEMHEILAKALNILPKREHIELVKKFAQLEFQK 1620

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDL---IRGLFERAISL 1881
            G  ++GRS+FEG++++ PKR DLW++Y+DQEI+         D D+   +  LFER +S 
Sbjct: 1621 GDPEQGRSLFEGLVADAPKRIDLWNVYIDQEIKQDNKTSDEDDTDIKSKVEDLFERVLSK 1680

Query: 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
             +  K+ KF F K+L YE+   +E  I  VK KA EYV++
Sbjct: 1681 KITRKQAKFFFNKWLNYEEDKQDENMIARVKSKAAEYVQN 1720



 Score =  195 bits (495), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 186/683 (27%), Positives = 319/683 (46%), Gaps = 40/683 (5%)

Query: 183 LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 242
           L  IF +G  +   +    +D K   K++I L++    + + L ++ +    +L   VKS
Sbjct: 177 LFKIFKLGSWLKAKITTSHEDYK--NKKRIELTIEPESVNENLEVDDLIVNNILQCSVKS 234

Query: 243 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSD 299
           IEDHG IL  G   ++GF+    L  N+ IDV    PGL++   + S    R  + L   
Sbjct: 235 IEDHGIILDTGKQEYSGFISNKELT-NAQIDVNTIVPGLVILCSIASKPSGR-TINLKPT 292

Query: 300 PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
             TVS   T      SID + PG++V   +  + ENG++        GT+ +  +QN F 
Sbjct: 293 TATVSAKKTTVSTISSIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQN-FE 351

Query: 360 TTNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIY 411
               K+ Y     V AR+L V     ++ + L++ P++L      S  +      +G ++
Sbjct: 352 LKELKHKYAIGSTVKARVLAVLLKNGTKKLILSILPHVLQLGDDSSQTEALEAFPIGHVF 411

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 471
           DQ KV+  D+       +  +  S+  +  I     ++ + L   Y  GS  + R++GF 
Sbjct: 412 DQVKVIGNDKHY-----VYVSFGSSSLFGQIHQSKFDDNKSL-LDYSIGSTHKSRVIGFN 465

Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPL 528
            ++ L     ++   +       DV  G ++   +++ V  D  G  V+F    K   P 
Sbjct: 466 EVDNLLILTFESKVIDAEYLNVRDVPIGKLLPNVEILKVLEDGVGINVKFFDEFKGFVPG 525

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRL 587
             MS+ ++V P +KF+VG +   R+L    KR  VT +K LV      ILS   +A    
Sbjct: 526 NQMSDIKLVYPERKFRVGTKTKGRLLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGF 585

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            T+  + K   +GC V F+  ++ F P++E+      + SS   +GQ+VK RI+      
Sbjct: 586 KTNAIVEKFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDVNKEQ 645

Query: 648 RRINLSFMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPT 701
           +R+ ++ + + + +S     ++  LVSG  +V  V    T ++V+V  +   + +G I  
Sbjct: 646 KRLVVT-LKQSSELSNAQKNEISKLVSGKSIVKTVVVEKTKDSVLVE-LEGSHLRGVIYD 703

Query: 702 EHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINS--AQQLPSDA 756
             L+D + E    +   +  G E  ++L+LD +  +  ++ +AK SLI++  ++  P + 
Sbjct: 704 GQLSDGNYEQNRALAKRLAIG-ETLEVLILDKDLKARTVIATAKKSLIDASKSKSFPVEF 762

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S I  N VV GYV ++   G FV F GRLTG             DLSK ++  QS+   +
Sbjct: 763 SDIAVNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCRV 822

Query: 817 LDVNSETGRITLSLKQSCCSSTD 839
           L V+ E  R  L+L  S   + D
Sbjct: 823 LSVDKENERFLLTLNNSSSFTKD 845



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 5/169 (2%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            SD+  G V+KG V  + + G  V     + AL  +  +S+  +      FK    ++ ++
Sbjct: 1143 SDLTRGQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKI 1202

Query: 554  LGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQ 610
            +  K + RI +T K++ V  +L I+ ++ +     I  G +T     G FV+      V 
Sbjct: 1203 VNCKQEGRILMTLKESEVNGELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGTVNVS 1262

Query: 611  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            G    SE+  +      S++  G  VK +I+  I + +R  LS  MK +
Sbjct: 1263 GLCHHSEISENDVDNVKSLFGTGDRVKVKIL-KIDSEKR-QLSLGMKAS 1309


>gi|238488517|ref|XP_002375496.1| rRNA biogenesis protein RRP5, putative [Aspergillus flavus NRRL3357]
 gi|220697884|gb|EED54224.1| rRNA biogenesis protein RRP5, putative [Aspergillus flavus NRRL3357]
          Length = 1827

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 26/302 (8%)

Query: 1644 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEKAR IAERAL+
Sbjct: 1524 EIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLRYMAFQLELGEVEKARDIAERALR 1583

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
            TI I ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++V+  L+ +Y ++ 
Sbjct: 1584 TITIGQDAEKLNIWVAMLNLENTYGN--DDTIDEVFKRACQYNDTQEVYERLISIYIQSG 1641

Query: 1764 QNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKF 1820
            +N+ ADEL    + KK   S K +L     L       E  +A++ RAL SLP H H++ 
Sbjct: 1642 KNEKADELFQTALKKKISQSPKFFLNYASFLFDNMAAPERGRALLPRALQSLPSHTHVET 1701

Query: 1821 ISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1878
             S+ A LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R LFER 
Sbjct: 1702 TSKFAQLEFRSEHGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKNGDAEQVRRLFERV 1761

Query: 1879 ISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYV 1919
            + +               L PK+ +F FKK+L +E+ +     G E+ +E +K KA +YV
Sbjct: 1762 LGIRDSKKGVASVEASKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKAKAADYV 1821

Query: 1920 ES 1921
            +S
Sbjct: 1822 KS 1823



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 210/862 (24%), Positives = 369/862 (42%), Gaps = 88/862 (10%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           + A  RK QKK         K   +    +K       +A +L +  DD+ P FPRGGG 
Sbjct: 26  VGAEERKDQKK--------QKTGASGEGKTKPDAGSGPKASELTVLRDDE-PSFPRGGGS 76

Query: 61  SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSL---------- 110
            LT  ER +I  +   +    E+   K + K  +  E    E VDD  +           
Sbjct: 77  VLTPLERKQIQIQATKDV-LFEQKATKGSSKNDEHDEDAEMEDVDDTTATATKKSRKRKT 135

Query: 111 ----FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARA 163
                 D    K       +  K +  G  + G V+ ++  D+ + LP  L G   L   
Sbjct: 136 KSKKSADEAQDKQGVRIEGLNFKRVVPGTMVLGQVSSISAHDIGLSLPNNLTGYVPLTAV 195

Query: 164 ADALDPILDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQLDD---DKKE 206
           +  L+  ++N +  +E+                L   F++GQ +   V+ + +   D   
Sbjct: 196 SKRLEEKIENLLNEDENAEEDDDDDDDDEDSIDLSDYFYLGQYLRAYVVSVGNNAADASS 255

Query: 207 IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRN 264
             +++I L++       GL    + +   + A V S+EDHG ++  G+      GF+ + 
Sbjct: 256 KSRKRIELTVDPRQANFGLLKSDLVDNTAVQASVVSVEDHGLVMDLGIEGADIKGFMSKK 315

Query: 265 NLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLV 320
            +   +    +K G +   +V   +    V+ LS++  + S  + K        +I+  +
Sbjct: 316 EIDPKTDYSTIKEGSVFLCMVTGQNANGNVLKLSANLQS-SGSIKKSHYLSTAPTINSFL 374

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG      +  +  +G     +     TVD+          +  N Y    KV  R++  
Sbjct: 375 PGTAAEILLTEVTSSGATGKIMGMLDTTVDLVQSGGNSSPDDLANKYKIGAKVKGRLIST 434

Query: 381 DPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            P S    VG +L  ++       + P S      +  I  ++KV++VD GLG+ + I S
Sbjct: 435 FPASDPYKVGFSLLDHVCKFTSETQGPGSSEDAPAISAIVPEAKVIKVDPGLGVYVQIGS 494

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKKY---KEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           T      +V +S +A+ +V  +  +Y   +  S    R++G+  L+ L     + S  + 
Sbjct: 495 T--KHVGFVHVSKLADGQVESISAEYGPFRTDSTHEGRVVGYSALDNLYLLSFERSVIDQ 552

Query: 489 LVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
                 DV  G VVKGK+    I      G IV    G+  L P  H ++  +  P KKF
Sbjct: 553 PFLRIEDVTIGAVVKGKIEKLLIGPSGLDGLIVALADGITGLVPSMHFADTALQFPEKKF 612

Query: 544 KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
           + G  +  R+L V  + ++I +T KK+L+ S+ AI   Y        + G I  ++ HG 
Sbjct: 613 REGMTVSARILSVNPEKRQIRLTLKKSLLNSESAIWKDYDSIVAGAQSPGTIVNLKPHGA 672

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
            V+FY  V+GF P SE+      +PS  + +GQVV    +S   +  ++ +S    P+  
Sbjct: 673 VVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDSSLEKLAVS-CKDPSTF 731

Query: 662 SED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATV 713
           +E      + +  G LV+G V   + + +++ +   G     +  +H+ D     + +T+
Sbjct: 732 TETYKKAFESIHPGLLVTGTVFEKSSDDLLLKLDDYGLV-ARLNLDHVVDGSPSKQSSTL 790

Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
            K  I+ G + ++LLVLD + +  L+  S + SL  +A+Q  +P+    +   + V G+V
Sbjct: 791 SK--IRVGQKLNELLVLDIQRTRRLIRVSGRASLKKAAKQGLIPASFEDVQEGAEVTGFV 848

Query: 770 CNIIETGCFVRFLGRLTGFAPR 791
            NI  TG FV FLG + G  P+
Sbjct: 849 RNITMTGVFVEFLGGVIGLVPK 870



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 169/380 (44%), Gaps = 47/380 (12%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1002 FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1061

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1062 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1120

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1121 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1171

Query: 347  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 406
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1172 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1230

Query: 407  VGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 459
                 +Q KV  V RG        GL + +        AYV +SD+++  +++ +  ++ 
Sbjct: 1231 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGH---GVTAYVRVSDLSDSYLKEWKDSFQV 1287

Query: 460  GSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
               V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FGA 
Sbjct: 1288 DQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFGAF 1346

Query: 516  VQFPG--GVKALCPLPHMSE 533
            +   G   +  LC    M+E
Sbjct: 1347 IVVDGSANISGLCHRSEMAE 1366



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 541  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 595
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1106 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1156

Query: 596  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1157 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1214

Query: 656  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1215 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1272

Query: 704  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 758
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1273 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1326

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1327 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1386

Query: 817  LDVNSETGRITLSLKQSCCSSTD 839
            L ++ + G+I+  LK S     D
Sbjct: 1387 LKIDRKQGKISFGLKASYFKDED 1409



 Score = 55.1 bits (131), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +      
Sbjct: 1054 LNLEQVQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH------ 1107

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + 
Sbjct: 1108 --FPIGSALRVNVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVT 1158

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   +L ++      P +     +L+  V S+D+  K + LS  
Sbjct: 1159 ERQVIMQL-TDTIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLR 1216

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L ++
Sbjct: 1217 PSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDS 1276

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQ 413
            +    WK+ +   + V  R+  VDP    + + L   +L  + +AP     +K G I   
Sbjct: 1277 Y-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-T 1334

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             K+ +V+     ++   S  +S   +   S++AE  V      Y EG  V+ +IL     
Sbjct: 1335 GKIRKVEEFGAFIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRK 1392

Query: 474  EGLATGILKASAFE 487
            +G  +  LKAS F+
Sbjct: 1393 QGKISFGLKASYFK 1406


>gi|238882053|gb|EEQ45691.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1726

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/280 (41%), Positives = 178/280 (63%), Gaps = 13/280 (4%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1447 LNTRAPQSTADFERLLIGNPNSSILWMNYMSFQLQLSEVDKAREIGERALKTINYREEQE 1506

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLNIW+A  NLEN +G   +E++   F++++QY D   +H  L+ +Y+ +E+   A +L 
Sbjct: 1507 KLNIWIALLNLENTFG--TDESLEDTFKKSIQYMDSFTMHEKLVNIYKMSEKFDQAKQLF 1564

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
             +M KKF      W+     LL Q  Q+ +  ++ +AL  LP+ +HI+ + + A LEF+ 
Sbjct: 1565 NRMTKKFGKVLNTWVLYGSFLLDQNSQDEMHEILAKALNILPKREHIELVKKFAQLEFQK 1624

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDL---IRGLFERAISL 1881
            G  ++GRS+FEG++++ PKR DLW++Y+DQEI+         D D+   +  LFER +S 
Sbjct: 1625 GDPEQGRSLFEGLVADAPKRIDLWNVYIDQEIKQDNKTSDEDDTDIKSKVEDLFERVLSK 1684

Query: 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
             +  K+ KF F K+L YE+   +E  I  VK KA EYV++
Sbjct: 1685 KITRKQAKFFFNKWLNYEEDKQDENMIARVKSKAAEYVQN 1724



 Score =  195 bits (495), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 186/683 (27%), Positives = 319/683 (46%), Gaps = 40/683 (5%)

Query: 183 LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 242
           L  IF +G  +   +    +D K   K++I L++    + + L ++ +    +L   VKS
Sbjct: 181 LFKIFKLGSWLKAKITTSHEDYK--NKKRIELTIEPESVNENLEVDDLIVNNILQCSVKS 238

Query: 243 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK---PGLLLQGVVRSIDRTRKVVYLSSD 299
           IEDHG IL  G   ++GF+    L  N+ IDV    PGL++   + S    R  + L   
Sbjct: 239 IEDHGIILDTGKQEYSGFISNKELT-NAQIDVNTIVPGLVILCSIASKPSGR-TINLKPT 296

Query: 300 PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
             TVS   T      SID + PG++V   +  + ENG++        GT+ +  +QN F 
Sbjct: 297 TATVSAKKTTVSTISSIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQN-FE 355

Query: 360 TTNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIY 411
               K+ Y     V AR+L V     ++ + L++ P++L      S  +      +G ++
Sbjct: 356 LKELKHKYAIGSTVKARVLAVLLKNGTKKLILSILPHVLQLGDDSSQTEALEAFPIGHVF 415

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 471
           DQ KV+  D+       +  +  S+  +  I     ++ + L   Y  GS  + R++GF 
Sbjct: 416 DQVKVIGNDKHY-----VYVSFGSSSLFGQIHQSKFDDNKSL-LDYSIGSTHKSRVIGFN 469

Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPL 528
            ++ L     ++   +       DV  G ++   +++ V  D  G  V+F    K   P 
Sbjct: 470 EVDNLLILTFESKVIDAEYLNVRDVPIGKLLPNVEILKVLEDGIGINVKFFDEFKGFVPG 529

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRL 587
             MS+ ++V P +KF+VG +   R+L    KR  VT +K LV      ILS   +A    
Sbjct: 530 NQMSDIKLVYPERKFRVGTKTKGRLLNYNGKRALVTFRKALVNLEDDEILSDIDQAEIGF 589

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            T+  + K   +GC V F+  ++ F P++E+      + SS   +GQ+VK RI+      
Sbjct: 590 KTNAIVEKFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDINKEQ 649

Query: 648 RRINLSFMMKPTRVSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPT 701
           +R+ ++ + + + +S     ++  LVSG  +V  V    T ++V+V  +   + +G I  
Sbjct: 650 KRLVVT-LKQSSELSNAQKNEISKLVSGKSIVKTVVVEKTKDSVLVE-LEGSHLRGVIYD 707

Query: 702 EHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINS--AQQLPSDA 756
             L+D + E    +   +  G E  ++L+LD +  +  ++ +AK SLI++  ++  P + 
Sbjct: 708 GQLSDGNYEQNRALAKRLAIG-ETLEVLILDKDLKARTVIATAKKSLIDASKSKSFPVEF 766

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           S I  N VV GYV ++   G FV F GRLTG             DLSK ++  QS+   +
Sbjct: 767 SDIAVNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCRV 826

Query: 817 LDVNSETGRITLSLKQSCCSSTD 839
           L V+ E  R  L+L  S   + D
Sbjct: 827 LSVDKENERFLLTLNNSSSFTKD 849



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 5/169 (2%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            SD+  G V+KG V  + + G  V     + AL  +  +S+  +      FK    ++ ++
Sbjct: 1147 SDLTRGQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKI 1206

Query: 554  LGVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQ 610
            +  K + RI +T K++ V  +L I+ ++ +     I  G +T     G FV+      V 
Sbjct: 1207 VNCKQEGRILMTLKESEVNGELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGTVNVS 1266

Query: 611  GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            G    SE+  +      S++  G  VK +I+  I + +R  LS  MK +
Sbjct: 1267 GLCHHSEISENDVDNVKSLFGTGDRVKVKIL-KIDSEKR-QLSLGMKAS 1313


>gi|83770281|dbj|BAE60414.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1827

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 26/302 (8%)

Query: 1644 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEKAR IAERAL+
Sbjct: 1524 EIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLRYMAFQLELGEVEKAREIAERALR 1583

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
            TI I ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++V+  L+ +Y ++ 
Sbjct: 1584 TITIGQDAEKLNIWVAMLNLENTYGN--DDTIDEVFKRACQYNDTQEVYERLISIYIQSG 1641

Query: 1764 QNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKF 1820
            +N+ ADEL    + KK   S K +L     L       E  +A++ RAL SLP H H++ 
Sbjct: 1642 KNEKADELFQTALKKKISQSPKFFLNYASFLFDNMAAPERGRALLPRALQSLPSHTHVET 1701

Query: 1821 ISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1878
             S+ A LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R LFER 
Sbjct: 1702 TSKFAQLEFRSEHGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKNGDAEQVRRLFERV 1761

Query: 1879 ISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYV 1919
            + +               L PK+ +F FKK+L +E+ +     G E+ +E +K KA +YV
Sbjct: 1762 LGIRDSKKGVASVEASKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKAKAADYV 1821

Query: 1920 ES 1921
            +S
Sbjct: 1822 KS 1823



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 210/862 (24%), Positives = 369/862 (42%), Gaps = 88/862 (10%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           + A  RK QKK         K   +    +K       +A +L +  DD+ P FPRGGG 
Sbjct: 26  VGAEERKDQKK--------QKTGASGEGKTKPDAGSGPKASELTVLRDDE-PSFPRGGGS 76

Query: 61  SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSL---------- 110
            LT  ER +I  +   +    E+   K + K  +  E    E VDD  +           
Sbjct: 77  VLTPLERKQIQIQATKDV-LFEQKATKGSSKNDEHDEDAEMEDVDDTTATATKKSRKRKT 135

Query: 111 ----FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARA 163
                 D    K       +  K +  G  + G V+ ++  D+ + LP  L G   L   
Sbjct: 136 KSKKSADEAQDKQGVRIEGLNFKRVVPGTMVLGQVSSISAHDIGLSLPNNLTGYVPLTAV 195

Query: 164 ADALDPILDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQLDD---DKKE 206
           +  L+  ++N +  +E+                L   F++GQ +   V+ + +   D   
Sbjct: 196 SKRLEEKIENLLNEDENAEEDDDDDDDDEDSIDLSDYFYLGQYLRAYVVSVGNNAADASS 255

Query: 207 IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRN 264
             +++I L++       GL    + +   + A V S+EDHG ++  G+      GF+ + 
Sbjct: 256 KSRKRIELTVDPRQANFGLLKSDLVDNTAVQASVVSVEDHGLVMDLGIEGADIKGFMSKK 315

Query: 265 NLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLV 320
            +   +    +K G +   +V   +    V+ LS++  + S  + K        +I+  +
Sbjct: 316 EIDPKTDYSTIKEGSVFLCMVTGQNANGNVLKLSANLQS-SGSIKKSHYLSTAPTINSFL 374

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG      +  +  +G     +     TVD+          +  N Y    KV  R++  
Sbjct: 375 PGTAAEILLTEVTSSGATGKIMGMLDTTVDLVQSGGNSSPDDLANKYKIGAKVKGRLIST 434

Query: 381 DPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            P S    VG +L  ++       + P S      +  I  ++KV++VD GLG+ + I S
Sbjct: 435 FPASDPYKVGFSLLDHVCKFTSETQGPGSSEDAPAISAIVPEAKVIKVDPGLGVYVQIGS 494

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKKY---KEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           T      +V +S +A+ +V  +  +Y   +  S    R++G+  L+ L     + S  + 
Sbjct: 495 T--KHVGFVHVSKLADGQVESISAEYGPFRTDSTHEGRVVGYSALDNLYLLSFERSVIDQ 552

Query: 489 LVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
                 DV  G VVKGK+    I      G IV    G+  L P  H ++  +  P KKF
Sbjct: 553 PFLRIEDVTIGAVVKGKIEKLLIGPSGLDGLIVALADGITGLVPSMHFADTALQFPEKKF 612

Query: 544 KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
           + G  +  R+L V  + ++I +T KK+L+ S+ AI   Y        + G I  ++ HG 
Sbjct: 613 REGMTVSARILSVNPEKRQIRLTLKKSLLNSESAIWKDYDSIVAGAQSPGTIVNLKPHGA 672

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
            V+FY  V+GF P SE+      +PS  + +GQVV    +S   +  ++ +S    P+  
Sbjct: 673 VVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDSSLEKLAVS-CKDPSTF 731

Query: 662 SED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATV 713
           +E      + +  G LV+G V   + + +++ +   G     +  +H+ D     + +T+
Sbjct: 732 TETYKKAFESIHPGLLVTGTVFEKSSDDLLLKLDDYGLV-ARLNLDHVVDGSPSKQSSTL 790

Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
            K  I+ G + ++LLVLD + +  L+  S + SL  +A+Q  +P+    +   + V G+V
Sbjct: 791 SK--IRVGQKLNELLVLDIQRTRRLIRVSGRASLKKAAKQGLIPASFEDVQEGAEVTGFV 848

Query: 770 CNIIETGCFVRFLGRLTGFAPR 791
            NI  TG FV FLG + G  P+
Sbjct: 849 RNITMTGVFVEFLGGVIGLVPK 870



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 169/380 (44%), Gaps = 47/380 (12%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1002 FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1061

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1062 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1120

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1121 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1171

Query: 347  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 406
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1172 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1230

Query: 407  VGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 459
                 +Q KV  V RG        GL + +        AYV +SD+++  +++ +  ++ 
Sbjct: 1231 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGH---GVTAYVRVSDLSDSYLKEWKDSFQV 1287

Query: 460  GSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
               V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FGA 
Sbjct: 1288 DQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFGAF 1346

Query: 516  VQFPG--GVKALCPLPHMSE 533
            +   G   +  LC    M+E
Sbjct: 1347 IVVDGSANISGLCHRSEMAE 1366



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 541  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 595
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1106 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1156

Query: 596  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1157 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1214

Query: 656  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1215 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1272

Query: 704  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 758
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1273 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1326

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1327 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1386

Query: 817  LDVNSETGRITLSLKQSCCSSTD 839
            L ++ + G+I+  LK S     D
Sbjct: 1387 LKIDRKQGKISFGLKASYFKDED 1409



 Score = 55.1 bits (131), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +      
Sbjct: 1054 LNLEQVQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH------ 1107

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + 
Sbjct: 1108 --FPIGSALRVNVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVT 1158

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   +L ++      P +     +L+  V S+D+  K + LS  
Sbjct: 1159 ERQVIMQL-TDTIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLR 1216

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L ++
Sbjct: 1217 PSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDS 1276

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQ 413
            +    WK+ +   + V  R+  VDP    + + L   +L  + +AP     +K G I   
Sbjct: 1277 Y-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-T 1334

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             K+ +V+     ++   S  +S   +   S++AE  V      Y EG  V+ +IL     
Sbjct: 1335 GKIRKVEEFGAFIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRK 1392

Query: 474  EGLATGILKASAFE 487
            +G  +  LKAS F+
Sbjct: 1393 QGKISFGLKASYFK 1406


>gi|317136747|ref|XP_001727253.2| rRNA biogenesis protein RRP5 [Aspergillus oryzae RIB40]
          Length = 1818

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 26/302 (8%)

Query: 1644 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEKAR IAERAL+
Sbjct: 1515 EIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLRYMAFQLELGEVEKAREIAERALR 1574

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
            TI I ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++V+  L+ +Y ++ 
Sbjct: 1575 TITIGQDAEKLNIWVAMLNLENTYGN--DDTIDEVFKRACQYNDTQEVYERLISIYIQSG 1632

Query: 1764 QNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKF 1820
            +N+ ADEL    + KK   S K +L     L       E  +A++ RAL SLP H H++ 
Sbjct: 1633 KNEKADELFQTALKKKISQSPKFFLNYASFLFDNMAAPERGRALLPRALQSLPSHTHVET 1692

Query: 1821 ISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1878
             S+ A LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R LFER 
Sbjct: 1693 TSKFAQLEFRSEHGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKNGDAEQVRRLFERV 1752

Query: 1879 ISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYV 1919
            + +               L PK+ +F FKK+L +E+ +     G E+ +E +K KA +YV
Sbjct: 1753 LGIRDSKKGVASVEASKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKAKAADYV 1812

Query: 1920 ES 1921
            +S
Sbjct: 1813 KS 1814



 Score =  174 bits (442), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 200/814 (24%), Positives = 352/814 (43%), Gaps = 79/814 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLG 108
           DD P FPRGGG  LT  ER +I  +   +    E+   K + K  +  E    E VDD  
Sbjct: 56  DDEPSFPRGGGSVLTPLERKQIQIQATKDV-LFEQKATKGSSKNDEHDEDAEMEDVDDTT 114

Query: 109 SL--------------FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLP 154
           +                 D    K       +  K +  G  + G V+ ++  D+ + LP
Sbjct: 115 ATATKKSRKRKTKSKKSADEAQDKQGVRIEGLNFKRVVPGTMVLGQVSSISAHDIGLSLP 174

Query: 155 GGLRG---LARAADALDPILDNEIEANEDNL--------------LPTIFHVGQLVSCIV 197
             L G   L   +  L+  ++N +  +E+                L   F++GQ +   V
Sbjct: 175 NNLTGYVPLTAVSKRLEEKIENLLNEDENAEEDDDDDDDDEDSIDLSDYFYLGQYLRAYV 234

Query: 198 LQLDD---DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 254
           + + +   D     +++I L++       GL    + +   + A V S+EDHG ++  G+
Sbjct: 235 VSVGNNAADASSKSRKRIELTVDPRQANFGLLKSDLVDNTAVQASVVSVEDHGLVMDLGI 294

Query: 255 --PSFTGFLPRNNLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD- 310
                 GF+ +  +   +    +K G +   +V   +    V+ LS++  + S  + K  
Sbjct: 295 EGADIKGFMSKKEIDPKTDYSTIKEGSVFLCMVTGQNANGNVLKLSANLQS-SGSIKKSH 353

Query: 311 --LKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 368
                 +I+  +PG      +  +  +G     +     TVD+          +  N Y 
Sbjct: 354 YLSTAPTINSFLPGTAAEILLTEVTSSGATGKIMGMLDTTVDLVQSGGNSSPDDLANKYK 413

Query: 369 QHKKVNARILFVDPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRV 419
              KV  R++   P S    VG +L  ++       + P S      +  I  ++KV++V
Sbjct: 414 IGAKVKGRLISTFPASDPYKVGFSLLDHVCKFTSETQGPGSSEDAPAISAIVPEAKVIKV 473

Query: 420 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY---KEGSCVRVRILGFRHLEGL 476
           D GLG+ + I ST      +V +S +A+ +V  +  +Y   +  S    R++G+  L+ L
Sbjct: 474 DPGLGVYVQIGST--KHVGFVHVSKLADGQVESISAEYGPFRTDSTHEGRVVGYSALDNL 531

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHM 531
                + S  +       DV  G VVKGK+    I      G IV    G+  L P  H 
Sbjct: 532 YLLSFERSVIDQPFLRIEDVTIGAVVKGKIEKLLIGPSGLDGLIVALADGITGLVPSMHF 591

Query: 532 SEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
           ++  +  P KKF+ G  +  R+L V  + ++I +T KK+L+ S+ AI   Y        +
Sbjct: 592 ADTALQFPEKKFREGMTVSARILSVNPEKRQIRLTLKKSLLNSESAIWKDYDSIVAGAQS 651

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G I  ++ HG  V+FY  V+GF P SE+      +PS  + +GQVV    +S   +  +
Sbjct: 652 PGTIVNLKPHGAVVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDSSLEK 711

Query: 650 INLSFMMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
           + +S    P+  +E      + +  G LV+G V   + + +++ +   G     +  +H+
Sbjct: 712 LAVS-CKDPSTFTETYKKAFESIHPGLLVTGTVFEKSSDDLLLKLDDYGLV-ARLNLDHV 769

Query: 705 AD---HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDAS 757
            D     + +T+ K  I+ G + ++LLVLD + +  L+  S + SL  +A+Q  +P+   
Sbjct: 770 VDGSPSKQSSTLSK--IRVGQKLNELLVLDIQRTRRLIRVSGRASLKKAAKQGLIPASFE 827

Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
            +   + V G+V NI  TG FV FLG + G  P+
Sbjct: 828 DVQEGAEVTGFVRNITMTGVFVEFLGGVIGLVPK 861



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 169/380 (44%), Gaps = 47/380 (12%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 993  FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1052

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1053 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1111

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1112 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1162

Query: 347  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 406
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1163 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1221

Query: 407  VGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 459
                 +Q KV  V RG        GL + +        AYV +SD+++  +++ +  ++ 
Sbjct: 1222 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGH---GVTAYVRVSDLSDSYLKEWKDSFQV 1278

Query: 460  GSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
               V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FGA 
Sbjct: 1279 DQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFGAF 1337

Query: 516  VQFPG--GVKALCPLPHMSE 533
            +   G   +  LC    M+E
Sbjct: 1338 IVVDGSANISGLCHRSEMAE 1357



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 541  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 595
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1097 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1147

Query: 596  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1148 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1205

Query: 656  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1206 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1263

Query: 704  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 758
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1264 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1317

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1318 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1377

Query: 817  LDVNSETGRITLSLKQSCCSSTD 839
            L ++ + G+I+  LK S     D
Sbjct: 1378 LKIDRKQGKISFGLKASYFKDED 1400



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +      
Sbjct: 1045 LNLEQVQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH------ 1098

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + 
Sbjct: 1099 --FPIGSALRVNVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVT 1149

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   +L ++      P +     +L+  V S+D+  K + LS  
Sbjct: 1150 ERQVIMQL-TDTIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLR 1207

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L ++
Sbjct: 1208 PSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDS 1267

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQ 413
            +    WK+ +   + V  R+  VDP    + + L   +L  + +AP     +K G I   
Sbjct: 1268 Y-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-T 1325

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             K+ +V+     ++   S  +S   +   S++AE  V      Y EG  V+ +IL     
Sbjct: 1326 GKIRKVEEFGAFIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRK 1383

Query: 474  EGLATGILKASAFE 487
            +G  +  LKAS F+
Sbjct: 1384 QGKISFGLKASYFK 1397


>gi|391866697|gb|EIT75965.1| rRNA processing protein [Aspergillus oryzae 3.042]
          Length = 1827

 Score =  231 bits (589), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 26/302 (8%)

Query: 1644 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            EI+      L+ + P++  ++ERL+   P+SS +W++YMAF L + +VEKAR IAERAL+
Sbjct: 1524 EIQVDRTGELDANGPQSVADYERLLLGEPDSSLLWLRYMAFQLELGEVEKAREIAERALR 1583

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
            TI I ++ EKLNIWVA  NLEN YGN  ++ + +VF+RA QY D ++V+  L+ +Y ++ 
Sbjct: 1584 TITIGQDAEKLNIWVAMLNLENTYGN--DDTIDEVFKRACQYNDTQEVYERLISIYIQSG 1641

Query: 1764 QNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHKHIKF 1820
            +N+ ADEL    + KK   S K +L     L       E  +A++ RAL SLP H H++ 
Sbjct: 1642 KNEKADELFQTALKKKISQSPKFFLNYASFLFDNMAAPERGRALLPRALQSLPSHTHVET 1701

Query: 1821 ISQTAILEFKN--GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1878
             S+ A LEF++  G  +RGR++FEG+LS +PKR DLW+I LD EI+ GD + +R LFER 
Sbjct: 1702 TSKFAQLEFRSEHGDVERGRTVFEGLLSSFPKRIDLWNILLDLEIKNGDAEQVRRLFERV 1761

Query: 1879 ISL--------------SLPPKKMKFLFKKYLEYEKSV-----GEEERIEYVKQKAMEYV 1919
            + +               L PK+ +F FKK+L +E+ +     G E+ +E +K KA +YV
Sbjct: 1762 LGIRDSKKGVASVEASKKLRPKQARFFFKKWLAFEEKLAAADGGNEKMVEDIKAKAADYV 1821

Query: 1920 ES 1921
            +S
Sbjct: 1822 KS 1823



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 210/862 (24%), Positives = 369/862 (42%), Gaps = 88/862 (10%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGH 60
           + A  RK QKK         K   +    +K       +A +L +  DD+ P FPRGGG 
Sbjct: 26  VGAEERKDQKK--------QKTGASGEGKTKPDAGSGPKASELTVLRDDE-PSFPRGGGS 76

Query: 61  SLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSL---------- 110
            LT  ER +I  +   +    E+   K + K  +  E    E VDD  +           
Sbjct: 77  VLTPLERKQIQIQATKDV-LFEQKATKDSSKNDEHDEDAEMEDVDDTTATATKKSRKRKT 135

Query: 111 ----FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARA 163
                 D    K       +  K +  G  + G V+ ++  D+ + LP  L G   L   
Sbjct: 136 KSKKSADEAQDKQGVRIEGLNFKRVVPGTMVLGQVSSISAHDIGLSLPNNLTGYVPLTAV 195

Query: 164 ADALDPILDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQLDD---DKKE 206
           +  L+  ++N +  +E+                L   F++GQ +   V+ + +   D   
Sbjct: 196 SKRLEEKIENLLNEDENAEEDDDDDDDDEDSIDLSDYFYLGQYLRAYVVSVGNNAADASS 255

Query: 207 IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGFLPRN 264
             +++I L++       GL    + +   + A V S+EDHG ++  G+      GF+ + 
Sbjct: 256 KSRKRIELTVDPRQANFGLLKSDLVDNTAVQASVVSVEDHGLVMDLGIEGADIKGFMSKK 315

Query: 265 NLAENSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD---LKGISIDLLV 320
            +   +    +K G +   +V   +    V+ LS++  + S  + K        +I+  +
Sbjct: 316 EIDPKTDYSTIKEGSVFLCMVTGQNANGNVLKLSANLQS-SGSIKKSHYLSTAPTINSFL 374

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
           PG      +  +  +G     +     TVD+          +  N Y    KV  R++  
Sbjct: 375 PGTAAEIFLTEVTSSGATGKIMGMLDTTVDLVQSGGNSSPDDLANKYKIGAKVKGRLIST 434

Query: 381 DPTSRA--VGLTLNPYLL----HNRAPPSH---VKVGDIYDQSKVVRVDRGLGLLLDIPS 431
            P S    VG +L  ++       + P S      +  I  ++KV++VD GLG+ + I S
Sbjct: 435 FPASDPYKVGFSLLDHVCKFTSETQGPGSSEDAPAISAIVPEAKVIKVDPGLGVYVQIGS 494

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKKY---KEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           T      +V +S +A+ +V  +  +Y   +  S    R++G+  L+ L     + S  + 
Sbjct: 495 T--KHVGFVHVSKLADGQVESISAEYGPFRTDSTHEGRVVGYSALDNLYLLSFERSVIDQ 552

Query: 489 LVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
                 DV  G VVKGK+    I      G IV    G+  L P  H ++  +  P KKF
Sbjct: 553 PFLRIEDVTIGAVVKGKIEKLLIGPSGLDGLIVALADGITGLVPSMHFADTALQFPEKKF 612

Query: 544 KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
           + G  +  R+L V  + ++I +T KK+L+ S+ AI   Y        + G I  ++ HG 
Sbjct: 613 REGMTVSARILSVNPEKRQIRLTLKKSLLNSESAIWKDYDSIVAGAQSPGTIVNLKPHGA 672

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
            V+FY  V+GF P SE+      +PS  + +GQVV    +S   +  ++ +S    P+  
Sbjct: 673 VVQFYGSVRGFLPVSEMSEAYIKDPSQHFRLGQVVNVHALSVDSSLEKLAVS-CKDPSTF 731

Query: 662 SED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATV 713
           +E      + +  G LV+G V   + + +++ +   G     +  +H+ D     + +T+
Sbjct: 732 TETYKKAFESIHPGLLVTGTVFEKSSDDLLLKLDDYGLV-ARLNLDHVVDGSPSKQSSTL 790

Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYV 769
            K  I+ G + ++LLVLD + +  L+  S + SL  +A+Q  +P+    +   + V G+V
Sbjct: 791 SK--IRVGQKLNELLVLDIQRTRRLIRVSGRASLKKAAKQGLIPASFEDVQEGAEVTGFV 848

Query: 770 CNIIETGCFVRFLGRLTGFAPR 791
            NI  TG FV FLG + G  P+
Sbjct: 849 RNITMTGVFVEFLGGVIGLVPK 870



 Score = 70.9 bits (172), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 169/380 (44%), Gaps = 47/380 (12%)

Query: 186  IFHVGQLVSCIVLQLDDDKK--------EIGKRKIW-LSLRLSLLYKG----LSLETVQE 232
             F   QL+S  +L + D +           GK  ++ LS++ S L       L+LE VQ 
Sbjct: 1002 FFRPKQLISARILGVHDARSHKFLPISHRTGKFPVFELSVKPSFLQAADPLPLNLEQVQV 1061

Query: 233  GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GLLLQGVVRS 286
            G     ++ +I D+   ++   P+  G L   + +++  +  DV+     G  L+  V +
Sbjct: 1062 GSSWLGFINNIADNCLWVNLS-PNVRGRLRLMDASDDLSLLADVEKHFPIGSALRVNVSA 1120

Query: 287  IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
            +D  +  + LS+          K  + +S+D +  GM++  RV  + E  V++       
Sbjct: 1121 VDIEKGRLDLSA---------KKGSETLSLDDITVGMILPGRVTKVTERQVIMQLTDTIV 1171

Query: 347  GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 406
            G VD+  L + +   N    Y++++ + A ++ VD  ++ + L+L P  + + + P    
Sbjct: 1172 GAVDMIDLTDDYSKAN-PTIYHKNEVLRACVISVDKANKKISLSLRPSKVLSSSLPVQDP 1230

Query: 407  VGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKE 459
                 +Q KV  V RG        GL + +        AYV +SD+++  +++ +  ++ 
Sbjct: 1231 EITSMEQVKVNDVVRGFVRKVADNGLFVTLGH---GVTAYVRVSDLSDSYLKEWKDSFQV 1287

Query: 460  GSCVRVRILGFRHLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
               V+ R+      +G     LK S     ++  V  H D+KPG +V GK+  V+ FGA 
Sbjct: 1288 DQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLH-DLKPGQIVTGKIRKVEEFGAF 1346

Query: 516  VQFPG--GVKALCPLPHMSE 533
            +   G   +  LC    M+E
Sbjct: 1347 IVVDGSANISGLCHRSEMAE 1366



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 144/323 (44%), Gaps = 43/323 (13%)

Query: 541  KKFKVGAELVFRV--LGVKSKRITVTHKK---TLVKSKLAILSSYAEATDRLITHGWITK 595
            K F +G+ L   V  + ++  R+ ++ KK   TL         S  + T  +I  G +TK
Sbjct: 1106 KHFPIGSALRVNVSAVDIEKGRLDLSAKKGSETL---------SLDDITVGMILPGRVTK 1156

Query: 596  IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
            + +    ++  + + G     +L  D      ++YH  +V++  ++S   A+++I+LS  
Sbjct: 1157 VTERQVIMQLTDTIVGAVDMIDLTDDYSKANPTIYHKNEVLRACVISVDKANKKISLS-- 1214

Query: 656  MKPTRVSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            ++P++V    L            VK+  +V G V  V  N + V  +  G +   +    
Sbjct: 1215 LRPSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFV-TLGHGVT-AYVRVSD 1272

Query: 704  LADHLEHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASH 758
            L+D     + +K   K  ++ DQL+     V+D E   L +  K S+++   + P     
Sbjct: 1273 LSD-----SYLKE-WKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHD 1326

Query: 759  IHPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
            + P  +V G +  + E G F+   G   ++G   RS+  + +  D    Y  G +V++ I
Sbjct: 1327 LKPGQIVTGKIRKVEEFGAFIVVDGSANISGLCHRSEMAENRVDDARTVYDEGDAVKAKI 1386

Query: 817  LDVNSETGRITLSLKQSCCSSTD 839
            L ++ + G+I+  LK S     D
Sbjct: 1387 LKIDRKQGKISFGLKASYFKDED 1409



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 33/374 (8%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            + L+ +  G    G +  + +  L + L   +RG  R  DA D + L  ++E +      
Sbjct: 1054 LNLEQVQVGSSWLGFINNIADNCLWVNLSPNVRGRLRLMDASDDLSLLADVEKH------ 1107

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D     I K ++ LS +     + LSL+ +  GM+L   V  + 
Sbjct: 1108 --FPIGSALRVNVSAVD-----IEKGRLDLSAKKG--SETLSLDDITVGMILPGRVTKVT 1158

Query: 245  DHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL-----LLQGVVRSIDRTRKVVYLSSD 299
            +   I+     +  G +   +L ++      P +     +L+  V S+D+  K + LS  
Sbjct: 1159 ERQVIMQL-TDTIVGAVDMIDLTDDYS-KANPTIYHKNEVLRACVISVDKANKKISLSLR 1216

Query: 300  PDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNT 357
            P  V  S    +D +  S++ +    +V   V+ + +NG+ ++     T  V +  L ++
Sbjct: 1217 PSKVLSSSLPVQDPEITSMEQVKVNDVVRGFVRKVADNGLFVTLGHGVTAYVRVSDLSDS 1276

Query: 358  FPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL--HNRAPPS--HVKVGDIYDQ 413
            +    WK+ +   + V  R+  VDP    + + L   +L  + +AP     +K G I   
Sbjct: 1277 Y-LKEWKDSFQVDQLVKGRVTVVDPEQGRLQICLKESVLDPNYKAPVKLHDLKPGQIV-T 1334

Query: 414  SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
             K+ +V+     ++   S  +S   +   S++AE  V      Y EG  V+ +IL     
Sbjct: 1335 GKIRKVEEFGAFIVVDGSANISGLCHR--SEMAENRVDDARTVYDEGDAVKAKILKIDRK 1392

Query: 474  EGLATGILKASAFE 487
            +G  +  LKAS F+
Sbjct: 1393 QGKISFGLKASYFK 1406


>gi|443896583|dbj|GAC73927.1| rRNA processing protein Rrp5 [Pseudozyma antarctica T-34]
          Length = 1563

 Score =  231 bits (588), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 120/279 (43%), Positives = 179/279 (64%), Gaps = 7/279 (2%)

Query: 1647 AAEERL---LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            A EE L   L   AP +  +FERL+  SPNSSF+WI++M+F L ++DV+KAR IA RAL+
Sbjct: 1271 ALEEDLTADLATKAPESSSDFERLLLGSPNSSFLWIQFMSFALQLSDVDKAREIARRALK 1330

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
             IN REE E++N+W+A  NLEN YG+  +E +   F+ A+Q  D   ++L ++ + E  +
Sbjct: 1331 VINYREEQERMNVWIALLNLENTYGS--DETLEATFKEAVQANDGFTMYLKMVNILEAAD 1388

Query: 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1822
            +N  A+E+  K   K+  +   W+   + LL+  Q +  +A++ RA+ +L +  H   I+
Sbjct: 1389 KNDAAEEMFVKAKAKYSTTPDFWIEYARYLLRTGQADAARALLPRAMQALDKRDHTSTIT 1448

Query: 1823 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD-VDLIRGLFERAISL 1881
            + AI EFK G A+RGR++FEG++  YPKR DLW  YLDQE RL D  + +R LFER ++L
Sbjct: 1449 RFAINEFKLGDAERGRTIFEGLVDSYPKRLDLWWQYLDQESRLDDNQNQVRNLFERTLTL 1508

Query: 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
             L  KK K L KK+LEYEK+ G+ +    V  KA ++V+
Sbjct: 1509 KLTAKKGKSLLKKWLEYEKAHGDAKSQNAVLAKAKQFVD 1547



 Score =  144 bits (362), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 150/560 (26%), Positives = 252/560 (45%), Gaps = 53/560 (9%)

Query: 183 LPTIFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSLETV 230
           L  +FHVGQ +   V+Q+       G+            R++ LSL   L+  G+S+  +
Sbjct: 239 LRDLFHVGQWLVASVVQVRGGDVARGRPTREGGEYEKESRRVELSLAPQLVNAGVSVSDL 298

Query: 231 QEGMVLTAYVKSIEDHGYILHFGLPSFTGF--------LPRNNLAENSGIDVKPGLLLQG 282
             G  L+A + S+EDHGYIL  G+  F GF        LP N  A  +G  ++ G ++  
Sbjct: 299 DAGATLSATISSVEDHGYILDSGIGEFRGFVSFAEAAKLPENFHAGKNGKSLQVGSVVFA 358

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            +  +   ++    + DP  VS    K +   SI  ++PG +    V + L  G+ +   
Sbjct: 359 KITKVPENKRSFEATLDPKAVSTTPIKHVP--SITAVLPGTLTKVLVTAALPTGLNVKLF 416

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 389
             F  T+D FHL       +  + Y +  K  AR+L+  + P S           R  GL
Sbjct: 417 GMFDATIDRFHLPELPEGKDIPDVYKEGSKHVARVLWDLLSPPSAALQGENPEHERKFGL 476

Query: 390 TLNPYLLHNRAPPS-------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 442
           +L P +L  +AP +       H        +  VV+     GL++ +  T +    +V I
Sbjct: 477 SLAPQVLSLQAPVAKDQQLLQHAYPIGTPIKVTVVQTVTDWGLIVSVKGTDLR--GFVHI 534

Query: 443 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           S V+++ V  L      + +G+  + R++G    +      LKAS  E      S+V+ G
Sbjct: 535 SQVSDDHVVALPPSSGPFCKGTEHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVG 594

Query: 500 MVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
            VV   +I +    AI +Q  G V  +    H ++ ++ +P K+FK G ++  RVL V  
Sbjct: 595 EVVNATIIKLGLPNAIFLQLQGHVDGVVFANHFADVKLTQPEKRFKPGLQVKARVLDVDP 654

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
              RI +T KK+LVKS L I+ S  +A   ++TH  + +++ +   V  + G++   P  
Sbjct: 655 SRNRIVLTCKKSLVKSDLPIVGSMQDARVGVVTHATVFRVQVNSIIVNLFGGLKALIPGR 714

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE--DDLVKLGSLV 673
           E       +  S +  G+VVK RI      ++R+  S     P  +++   D V++G  V
Sbjct: 715 EASEASFEDVKSSFTEGKVVKMRITEVDYENQRLVGSIKQASPEFLAKLNVDAVEVGEKV 774

Query: 674 SGVVDVVTPNAVVVYVIAKG 693
            G V  V    VV+ ++  G
Sbjct: 775 VGKVAAVHKEVVVLSLVPSG 794



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 142/664 (21%), Positives = 249/664 (37%), Gaps = 77/664 (11%)

Query: 327  TRVQSILENGVMLSFL-TYFTGTVDIF-----HLQNTFPTTNWKNDYNQHKKVNARILFV 380
            T VQ++ + G+++S   T   G V I      H+    P++       +HK   AR++  
Sbjct: 509  TVVQTVTDWGLIVSVKGTDLRGFVHISQVSDDHVVALPPSSGPFCKGTEHK---ARVVGH 565

Query: 381  DPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYV 440
             PT R + L+L   +L  +              + ++++     + L +          V
Sbjct: 566  SPTDRTLQLSLKASVLERKFMRVSEVEVGEVVNATIIKLGLPNAIFLQLQG---HVDGVV 622

Query: 441  TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVK 497
              +  A+ ++ + EK++K G  V+ R+L             K S  +    +V +  D +
Sbjct: 623  FANHFADVKLTQPEKRFKPGLQVKARVLDVDPSRNRIVLTCKKSLVKSDLPIVGSMQDAR 682

Query: 498  PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE--FEIVKPGKKFKVGAELVFRVLG 555
             G+V    V  V     IV   GG+KAL P    SE  FE VK    F  G  +  R+  
Sbjct: 683  VGVVTHATVFRVQVNSIIVNLFGGLKALIPGREASEASFEDVK--SSFTEGKVVKMRITE 740

Query: 556  V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY-NGVQGF 612
            V  +++R+  + K+   +    +     E  ++++  G +  + K    +    +GV+  
Sbjct: 741  VDYENQRLVGSIKQASPEFLAKLNVDAVEVGEKVV--GKVAAVHKEVVVLSLVPSGVRAL 798

Query: 613  APRSELGLDPGCEPSSMYHV-------------------GQVVKCRIMSSIPASRRINLS 653
               S L    G     +                      G V+    + S   +R  N S
Sbjct: 799  LSLSVLAAMRGTSAEELLESLEEDQEIDNLVVSVKNPEKGLVIVADKVRSSKTARDANGS 858

Query: 654  FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 713
                   VS    V+ G++V G V       +   V     ++ T+    LAD       
Sbjct: 859  -------VSTSAQVEQGAVVKGRVIQKNEKYLDCVVALGTATRATLHITDLADDFASGVS 911

Query: 714  MKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHG 767
            + S   PG   D  +V L     + ++S + S I+ +    +D      + +     V G
Sbjct: 912  LPS---PGDNVDCFVVSLKANGKSGVVSTRASRISPSNAEVTDVEITAITELAKGQKVRG 968

Query: 768  YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
            +V  I   G FV    +L       +  D    D  K + VGQ V   I+DVN+    I 
Sbjct: 969  FVKAITNVGVFVSLGRKLDARVQVRELFDEFVRDWKKRFTVGQVVSGTIMDVNANQNEIE 1028

Query: 828  LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND 887
            +SLK     ST  S        +E+     +        K +  F  G  ++G +    D
Sbjct: 1029 MSLK-----STPGSIKPRAERAQER-----AEADGKKRPKRLTDFKAGDKVKGFIKNIID 1078

Query: 888  FGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKT 940
            FGV V   E ++V G    ++L+    +        G  ++A +L + + +R +   LK 
Sbjct: 1079 FGVFVQI-EGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRINEEKRKISFGLKP 1137

Query: 941  VFID 944
             + D
Sbjct: 1138 SYFD 1141


>gi|328875120|gb|EGG23485.1| HAT repeat-containing protein [Dictyostelium fasciculatum]
          Length = 850

 Score =  229 bits (583), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/302 (40%), Positives = 189/302 (62%), Gaps = 7/302 (2%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAF 1684
            + K  +  KK  K E E+ I   EE LL++++ P +  +FER++  SPNSS++WI+YM+F
Sbjct: 549  NTKKQKIQKKLGKLEHERVISEREETLLDQNSVPESSGDFERVLLGSPNSSYIWIQYMSF 608

Query: 1685 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1744
             L M++++KAR I ERAL+ I   E  E+ N+WVA  N+EN YG   E+ ++ +F+RA+ 
Sbjct: 609  YLGMSEIQKARDIGERALKKILSSEVVEQRNVWVALLNMENMYGG--EDTLMTLFKRAIL 666

Query: 1745 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQA 1803
            Y DPK+++ A++ + E TE+    D       KK++HS K W+R  + L K QQ + +  
Sbjct: 667  YQDPKRMYFAIIQILEHTEKLDRVDPYFAMFFKKYRHSSKAWIRYAEYLAKTQQLDKLSE 726

Query: 1804 VVQR--ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861
             + R   +  L + K I   S+   LEFK+G  +RGR++FE ++S  P RTDLW++Y+DQ
Sbjct: 727  TLSRLPRVEQLKKKKLIMITSKIGQLEFKHGNPERGRTVFESLISSNPSRTDLWNVYIDQ 786

Query: 1862 EIRL-GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            E++   +   IR LF+R ISL    + +K  FK+YL YEK  G+E  +  VKQ A++YVE
Sbjct: 787  ELKQENNAKNIRRLFDRCISLKTSDRNIKQFFKRYLSYEKDHGDESSVNNVKQLAIKYVE 846

Query: 1921 ST 1922
             +
Sbjct: 847  ES 848


>gi|241950924|ref|XP_002418184.1| rRNA biogenesis protein, putative [Candida dubliniensis CD36]
 gi|223641523|emb|CAX43484.1| rRNA biogenesis protein, putative [Candida dubliniensis CD36]
          Length = 1715

 Score =  228 bits (582), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/280 (40%), Positives = 177/280 (63%), Gaps = 13/280 (4%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1436 LNTRAPQSTADFERLLIGNPNSSILWMNYMSFQLQLSEVDKAREIGERALKTINYREEQE 1495

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLNIW+A  NLEN +G   +E++   F++++QY D   +H  L+ +Y+ +E+   A +L 
Sbjct: 1496 KLNIWIALLNLENTFGT--DESLEDTFKKSIQYMDSFTMHEKLINIYKMSEKFDQAKQLF 1553

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
             +M KKF      W+     LL Q  Q+ +  ++ +AL  LP+ +HI  + + A LEF+ 
Sbjct: 1554 NRMTKKFGKILNTWVLYGSFLLDQHSQDEMHEILAKALNILPKREHIDLVKKFAQLEFQK 1613

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDL---IRGLFERAISL 1881
            G  ++GRS+FEG++++ PKR DLW++Y+DQEI+         D ++   +  LFER +S 
Sbjct: 1614 GDPEQGRSLFEGLVADAPKRIDLWNVYIDQEIKQDSKNSEEDDTNIKSKVEDLFERVLSK 1673

Query: 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
             +  K+ KF F K+L YE+   +E  I  VK KA EYV++
Sbjct: 1674 KITRKQAKFFFNKWLNYEEDKQDENMIARVKSKAAEYVQN 1713



 Score =  194 bits (492), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 210/849 (24%), Positives = 373/849 (43%), Gaps = 82/849 (9%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG   L+  E  EI  E   D  FE  E      + K ++  ++    + +   +  
Sbjct: 16  FPRGGSKPLSALEVKEISNEATKDVLFEQAESNKRSNSSKSEQPKKKHKKSSKNKSKNDK 75

Query: 112 GDGISGKLPR-YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGL---------- 160
            D                KN+ +G  + G +  +N+ D+ + L   L G           
Sbjct: 76  NDNDEETTQSVLIETFNFKNLVSGSSVLGQIKTINKLDIGLALGDNLTGYIPITSISPQI 135

Query: 161 ------------------ARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDD 202
                             +  AD          ++  +   P +  + +L S +  ++  
Sbjct: 136 TALIEKFEEQEQEEEEEESDNADGNQETKSATFKSKTEKEFPDLLKIFKLGSWLKAKITT 195

Query: 203 DKKEI-GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL 261
             ++   K++I L++    + + L ++ +    +L   VKSIEDHG IL  G P ++GF+
Sbjct: 196 SNEDFKNKKRIELTIEPESVNESLEVDDLIVNNILQCSVKSIEDHGIILDTGKPEYSGFI 255

Query: 262 PRNNLAENSGIDVK---PGLLLQGVV------RSIDRTRKVVYLSSDPDTVSKCVTKDLK 312
               L  N+ IDV    PGL++   +      R+I+    V  +S+   TVS        
Sbjct: 256 SNKELT-NAKIDVTTIVPGLVILCSIATKPSSRTINLKPIVATISAKKSTVSTIS----- 309

Query: 313 GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 372
             SID + PG++V   +  + ENG++        GT+ +  +QN F     K+ Y     
Sbjct: 310 --SIDSIQPGVIVDALINDVTENGLVTKVYGLVDGTIALSQIQN-FDLKELKHKYAIGST 366

Query: 373 VNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIYDQSKVVRVDRGLG 424
           V AR+L V     ++ + L++ P++L      S  +      +G ++D+ KV+  D+   
Sbjct: 367 VKARVLAVLLKNGTKKLILSILPHVLQLGDDSSQTQALEAFPIGHVFDEVKVIGNDKHY- 425

Query: 425 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 484
               +  +  S+  +  I     ++ + L   Y  GS  + R++GF  ++ L     ++ 
Sbjct: 426 ----VYVSFGSSSLFGQIHQSKFDDNKTL-LDYSIGSTHKSRVIGFNEVDNLLILSFESK 480

Query: 485 AFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
             +       DV  G ++   +++ V  D  G  V+F    K   P   MS+ ++V P +
Sbjct: 481 VIDAEYLNVRDVPIGKLLPNVEILKVLEDGVGINVKFFDEFKGFVPGNQMSDIKLVYPER 540

Query: 542 KFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWITKIEKHG 600
           KF+VG +   R+L    KR  +T +K LV      ILS+  +A     T+  + K   +G
Sbjct: 541 KFRVGTKTKGRLLNYNGKRALITFRKALVNLEDDEILSNIDQAEIGFKTNAIVEKFVPNG 600

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
           C V F+  ++ F P++E+      + SS   VGQ+VK RI+      +R+ ++ + + + 
Sbjct: 601 CIVSFFGNLRAFLPKTEISETFVEDASSYLKVGQIVKVRILDINKEQKRLVVT-LKQSSE 659

Query: 661 VSEDDLVKLGSLVSG--VVDVV----TPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATV 713
           +S     ++  LVSG  +V  V    T ++V+V  +   + +G I    L+D + E    
Sbjct: 660 LSNAQKNEINKLVSGKSIVKTVIVEKTKDSVLVE-LEGSHLRGVIYDGQLSDGNYEQNRA 718

Query: 714 MKSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINS--AQQLPSDASHIHPNSVVHGYV 769
           +   +  G    ++L+LD +  +  ++ +AK SLI +  ++  P D + +  N+VV GYV
Sbjct: 719 LAKRLTIGESL-EVLILDKDLKARTVIATAKKSLIEALKSKSFPVDFNDVTVNAVVKGYV 777

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            ++   G FV F GRLTG           + DLSK +Y  QS+   +L V+ E  R  L+
Sbjct: 778 KSVTSLGLFVTFTGRLTGLILAKYVTKNAKEDLSKKFYKYQSINCRVLSVDKENERFLLA 837

Query: 830 LKQSCCSST 838
           L  S  S T
Sbjct: 838 LNNSSSSFT 846



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 127/579 (21%), Positives = 233/579 (40%), Gaps = 66/579 (11%)

Query: 967  DLGVHQTVNAIVEIVKENYLVLSL--PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIAT 1024
            DL V+  +   V+ ++++ ++L    PEY+   G+ S  +    K      + G  ++ +
Sbjct: 223  DLIVNNILQCSVKSIEDHGIILDTGKPEYS---GFISNKELTNAKIDVTTIVPGLVILCS 279

Query: 1025 VMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDV---GSLVQAEITEIKPLELRL 1081
            +   PSS T       LK I  T ++        SS D    G +V A I ++    L  
Sbjct: 280  IATKPSSRTIN-----LKPIVATISAKKSTVSTISSIDSIQPGVIVDALINDVTENGLVT 334

Query: 1082 KFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIK 1141
            K      G I ++++ +     ++ L   + IG TV AR++A   K   KK     LSI 
Sbjct: 335  KVYGLVDGTIALSQIQNFD---LKELKHKYAIGSTVKARVLAVLLKNGTKKLI---LSIL 388

Query: 1142 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201
            P +L + +  S+    E          G+V+   +E  ++   +H     F   S +   
Sbjct: 389  PHVLQLGDDSSQTQALEA------FPIGHVF---DEVKVIGNDKHYVYVSFGSSSLFGQI 439

Query: 1202 ELQEFQRR-----FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
               +F        + IG      V+  N+   LL L           K +D    N++  
Sbjct: 440  HQSKFDDNKTLLDYSIGSTHKSRVIGFNEVDNLLIL-------SFESKVIDAEYLNVRDV 492

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
                 +    I K+L    G+ V+      G V   ++ +I +  P   +  G   K ++
Sbjct: 493  PIGKLLPNVEILKVLEDGVGINVKFFDEFKGFVPGNQMSDIKLVYPERKFRVGTKTKGRL 552

Query: 1317 LEIS-RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            L  + +    TF   L      + +S+ + +++                   N IV+ +V
Sbjct: 553  LNYNGKRALITFRKALVNLEDDEILSNIDQAEIG---------------FKTNAIVEKFV 597

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
             N    GC +     L A +  + +S+ +VE       +G++V  R+L +    KR+ VT
Sbjct: 598  PN----GCIVSFFGNLRAFLPKTEISETFVEDASSYLKVGQIVKVRILDINKEQKRLVVT 653

Query: 1436 LK-TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
            LK +S+   A ++EIN L  +    IV   I       + + +E ++L G+ +  +LS+ 
Sbjct: 654  LKQSSELSNAQKNEINKL--VSGKSIVKTVIVEKTKDSVLVELEGSHLRGVIYDGQLSDG 711

Query: 1495 HVDNIETIYR---AGEKVKVKILKVDKEKRRISLGMKSS 1530
            + +    + +    GE ++V IL  D + R +    K S
Sbjct: 712  NYEQNRALAKRLTIGESLEVLILDKDLKARTVIATAKKS 750


>gi|389630328|ref|XP_003712817.1| hypothetical protein MGG_05260 [Magnaporthe oryzae 70-15]
 gi|351645149|gb|EHA53010.1| hypothetical protein MGG_05260 [Magnaporthe oryzae 70-15]
          Length = 1781

 Score =  228 bits (580), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 331/1387 (23%), Positives = 587/1387 (42%), Gaps = 153/1387 (11%)

Query: 17   PKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEI--HAEV 74
            P+ + ASK++ K  K     +  A  +     +D P+FPRGGG  LT  E  +I   A  
Sbjct: 28   PRSDSASKSKDKADKPA---SAPAAPVVSKLKEDEPLFPRGGGSVLTPLEHKQIKVQASK 84

Query: 75   DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAG 134
            D  FE  E G   K K+ +   + K  ++   L  L  +  S K+      +  K +  G
Sbjct: 85   DVLFEQ-ESG-KSKGKEDRAPKKLKGKKSKTQLKELAKNADSVKI----ESLNFKRLVKG 138

Query: 135  MKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE-----------ANEDNLL 183
              + G ++ ++  ++ I LP  + G  +A  ++   L  +++            + +  L
Sbjct: 139  SLVLGQISAISALEVEISLPNNVTGHVKAT-SISTQLTKKLQDAMDVDQEEEDDDSEIDL 197

Query: 184  PTIFHVGQLVSCIVLQLDDDKKEIG---KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYV 240
             +I  VGQ V   V+   ++    G   KR+I LSL+  L   GLS   V E   +   +
Sbjct: 198  TSILSVGQYVRAYVVSTMEEPSTAGAKGKRRIELSLQPELANTGLSSADVVENSTVAGSI 257

Query: 241  KSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKPG----LLLQGVVRSIDR----TR 291
             S+EDHGY++  G+ + TGFL +  + +  S   ++PG    LL+ GV   I +    T+
Sbjct: 258  SSVEDHGYVVDLGIQNLTGFLSKKEVDKGISAAQLEPGCVHLLLVTGVKGKIAQVSTLTK 317

Query: 292  KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 351
            K+  +   P T            +I+  +PG  V   V  I   G+    +     T DI
Sbjct: 318  KLSNVQLFPGTAK----------TINTFLPGTAVDVLVSDISGRGLAGKVMGSLDVTADI 367

Query: 352  FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYL--LHNR-------- 399
             H        N +  Y    KV AR++   PTS    +G++L  +L  L  R        
Sbjct: 368  IHSGLGPNGVNLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGKE 427

Query: 400  APP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK-- 456
             PP + +    I +Q  V +V+  +GL +D     V  P +V IS V + +V  L +   
Sbjct: 428  VPPLTALPHSSIVEQCTVTKVEPDIGLFVDTGIEGV--PGFVHISRVKDGKVDALYEASG 485

Query: 457  -YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVV----KGKVIAVDS 511
             YK GS  R RI+G+  ++G+     + S  E       DV    VV    +  ++  D 
Sbjct: 486  PYKTGSVHRGRIVGYNSMDGMYHLSFEKSILERQYLRIEDVPIAEVVNVTIEKMIVKEDG 545

Query: 512  F-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKT 568
              G IV+   G+    P  H+++  +  P KKF+ G ++  RVL V   +  + +T KKT
Sbjct: 546  LSGVIVKLADGITGFVPEMHLADIRLQHPEKKFREGLKVKARVLSVDPAKNQLRLTFKKT 605

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            LV S+ A +  + EA+      G I KI+  G FV+FY  ++GF P  E+      +P+ 
Sbjct: 606  LVNSEAAPIKDFGEASVGQQVQGTIVKIKPIGAFVQFYGTLRGFLPIGEMSESFIRDPNE 665

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNA 684
             +  GQVV   ++S  P  RR+ +S         E  +    +K+G LVSG V   + + 
Sbjct: 666  HFRTGQVVNVHVISVDPERRRLVVSCKDPAAFGVEKQMALQKLKVGDLVSGSVTEKSEDN 725

Query: 685  VVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESS--NLLLSA 741
            V +  +     K  +   HL D          S I+ G   + L+VL+ +    +++LS 
Sbjct: 726  VFLE-LKDSSLKAVLRAHHLTDKSPSKNQSALSKIRVGQTLEDLVVLEKDEGRRSIVLSL 784

Query: 742  KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            K SL+ ++Q  Q  +  +      +V G+V NI  T  FV+F G LT   P+S      +
Sbjct: 785  KPSLVKASQNGQFLTTLADAKVGKLVQGFVRNITPTAVFVQFGGNLTALLPKSMISTQNQ 844

Query: 800  ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--------------CCSSTDASFMQE 845
            A       + Q++   +  V  E  R+ +S+  +                ++ DAS    
Sbjct: 845  ALEDFGLRLHQAIEVKVHSV--EDKRLVVSMPDAEAPKDTKPRHEAKPVSNAVDASITST 902

Query: 846  H-----FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
                   + + +IA ++ ++ N           +   ++G+V  S  F          D 
Sbjct: 903  DDISVGTVTKARIASIKKTQLN---------VALADNVQGRVDISEVF----------DS 943

Query: 901  YGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
            +  IT+ +   +      +I   ++ V  A+  R +  S +T        A  +    K 
Sbjct: 944  WDEITNAKDPLSKFTQNQIIDVRVIGVHDARNYRFLPFSHRTANSVLELTAKPSSVRAKG 1003

Query: 959  KRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQ-KFPQKQFL 1016
            + K  A  D+    +    V   ++ +L ++L P     I  + VSD ++  K  ++ F 
Sbjct: 1004 QYKPLAMADVKAGSSWLTFVNNNEDKWLWVNLSPAVRGRIRSSEVSDDSSHGKDLRQNFP 1063

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             G ++ A V+A+ + +  G+L L  ++    E    +  +K       +++ A +T++  
Sbjct: 1064 VGTALRARVLAVDADN--GKLDLSARSARPNEHMKWEELEKD------TVMHARVTKVND 1115

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1136
             ++  +        + I ++NDD  +      +  K  +    R+   S   + KK    
Sbjct: 1116 RQVFFQISDSVAAPVQIIDLNDDYDHA-----NPLKYSKNDIVRVSVVSIDKNHKK---L 1167

Query: 1137 ELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194
             LS + S +  SE  +  K +     +  G  + G+V  V ++   +T+   + A + I 
Sbjct: 1168 RLSARESRVLSSELPVKDKEITSVSQIEQGTILRGFVKNVSDKGLFVTLGGDVTALVRIS 1227

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
            D     + L++++  F + + V G V S++K        L   Q  +    VD     + 
Sbjct: 1228 D--LSDAFLKDWKEHFQVDQLVKGRVTSVDK-------TLGHVQMSLKASAVDEDYKPLP 1278

Query: 1255 TF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
             +  + EG ++ G++ K+      +++    ++ G  H TE+ +  V D    Y EG  V
Sbjct: 1279 GYGDLKEGQVITGKVRKVADFGAFILIDKSANVSGLCHRTEMADKPVKDATKLYREGDSV 1338

Query: 1313 KCKVLEI 1319
            K  +L +
Sbjct: 1339 KAIILSV 1345



 Score =  210 bits (535), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 117/274 (42%), Positives = 173/274 (63%), Gaps = 11/274 (4%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L+ + P+T  +FERL+   PNSS +WI YMAF + ++++ KAR +AERA+ TIN+REE E
Sbjct: 1488 LDANGPQTAGDFERLLLGQPNSSALWIAYMAFHMQVSELAKAREVAERAINTINVREETE 1547

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLN+W+AY NLE  YG   +E++ +VF+RA QY D  +VH  L  +  ++ ++  ADEL 
Sbjct: 1548 KLNVWIAYLNLEVAYGT--DESLDEVFKRACQYNDDLEVHERLASICIQSGKHDKADELF 1605

Query: 1773 YKMIKKF-KHSCKVWLRRVQRLL---KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828
              M+KKF   S KVWL     L    K    G +A++ RA+ SL  H H++  S+ A LE
Sbjct: 1606 QAMVKKFGSKSPKVWLNYAHFLYTSAKSPDRG-RALLPRAMKSLGSHAHLELASKFAGLE 1664

Query: 1829 FK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAI-SLSLP 1884
            F+   G  +RGR++FEG+LS YPKR DL    LD E+  G D  ++R +FER   +  L 
Sbjct: 1665 FRCPGGDPERGRTVFEGLLSTYPKRLDLRGQLLDLEVAAGSDKAVVRDVFERGTKAKGLK 1724

Query: 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
            PK+ K  F+++ ++E++ G+ +  E V  KA E+
Sbjct: 1725 PKQAKKWFQRWAKWEEANGDAKSREKVSAKAQEW 1758



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 187/448 (41%), Gaps = 55/448 (12%)

Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMKK---SFLWEL-SIKPSMLTV--------SEIGSK 1153
            NL   +KIG  V AR+I      D  K   S L  L S++P    V        + +   
Sbjct: 378  NLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGKEVPPLTALPHS 437

Query: 1154 LLFEECDVSIGQRVTGYVYKVDNEW--ALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
             + E+C V+  +   G       E     + ISR    ++  L  A  P +     R   
Sbjct: 438  SIVEQCTVTKVEPDIGLFVDTGIEGVPGFVHISRVKDGKVDALYEASGPYKTGSVHRGRI 497

Query: 1212 IGKAVTGHVLSINKEKKLL-RLVLRPFQDGISDKTV-DISNDNMQTFIHEGDIVGGRISK 1269
            +G      +  ++ EK +L R  LR     I D  + ++ N  ++  I + D + G I K
Sbjct: 498  VGYNSMDGMYHLSFEKSILERQYLR-----IEDVPIAEVVNVTIEKMIVKEDGLSGVIVK 552

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
            +  G+ G V    P ++       L +I +  P   + EG  VK +VL +         +
Sbjct: 553  LADGITGFV----PEMH-------LADIRLQHPEKKFREGLKVKARVLSVDPAKN---QL 598

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
             L+ + +L              V++    ++   + S    VQG +  +   G F+    
Sbjct: 599  RLTFKKTL--------------VNSEAAPIKDFGEASVGQQVQGTIVKIKPIGAFVQFYG 644

Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
             L   + +  +S+ ++  P + F  G++V   V+SV+P  +R+ V+ K  D       + 
Sbjct: 645  TLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHVISVDPERRRLVVSCK--DPAAFGVEKQ 702

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDHVDNIETIYRAG 1506
              L  L VGD+V G +       +F+ +++++L  +    H+++ S     +  +  R G
Sbjct: 703  MALQKLKVGDLVSGSVTEKSEDNVFLELKDSSLKAVLRAHHLTDKSPSKNQSALSKIRVG 762

Query: 1507 EKVK-VKILKVDKEKRRISLGMKSSYFK 1533
            + ++ + +L+ D+ +R I L +K S  K
Sbjct: 763  QTLEDLVVLEKDEGRRSIVLSLKPSLVK 790


>gi|4454542|gb|AAD20941.1| apoptosis-linked gene 4, deltaC form [Mus musculus]
          Length = 768

 Score =  226 bits (577), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 208/745 (27%), Positives = 353/745 (47%), Gaps = 77/745 (10%)

Query: 457  YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
            +K GS  +  I+ +  ++ LA   L+ S        + D+K G VVKG V+A+  FG +V
Sbjct: 18   FKPGSTHKCXIIDYSQMDELALLFLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILV 77

Query: 517  QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKL 574
            +    +K L P  H+++  +  P KK+  G E+  RVL    ++K++ +T KKTLV SKL
Sbjct: 78   KVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKL 137

Query: 575  AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
              ++ Y  A   L THG I +++ +GC V+FYN +QG  P+ EL      +P ++++ GQ
Sbjct: 138  PFITWYEGAKLGLQTHGVIIRVKDYGCIVKFYNDLQGLVPKHELSNPAIPDPETVFYTGQ 197

Query: 635  VVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL---------VKLGSLVSGVVDVVTPNA 684
            VVK  ++S  P+  R+ LSF ++  +R  +  +         V++G LV   V   T   
Sbjct: 198  VVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTG 257

Query: 685  VVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 744
            + V ++    +   +PT HL+DH  +  ++   ++ G    ++L L     ++LL  K +
Sbjct: 258  LEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILLCRKPA 316

Query: 745  LINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
            L+++ +  Q P   S I P  ++ G+V  I E G FV+F   L+G +P++   D      
Sbjct: 317  LVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTP 376

Query: 803  SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIAMLQ-S 858
            S+ +  GQ+V + + +V+    R+ LSL+ S CS   S   SF+     LEE   +    
Sbjct: 377  SEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLM 436

Query: 859  SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGATVESG 917
            S  +   ++ +     G V++  VHE   D  VV S +   D+    + +  AG  VE G
Sbjct: 437  SNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQEVEPG 496

Query: 918  SVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAI 977
               +  +L V   +  V +SL    ++R           K ++ R++S+    HQ    I
Sbjct: 497  QKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KPRKLRKSSR----HQ---GI 538

Query: 978  VEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGR 1036
            V+ ++E++ V SL E  H + ++ +S  N T  F  ++   GQ V  T+       T G 
Sbjct: 539  VQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPGVT-GL 597

Query: 1037 LLLL---------LKAISETETSSSK------------------RAKKKSSYDVGSLVQA 1069
            +L +         +    ++ET   K                  ++KK+ S  +G  V  
Sbjct: 598  ILAVEGPVFKRTRMPVQRDSETVDDKGEEKEEEEEEKEEENLTVKSKKRHSLAIGDKVTG 657

Query: 1070 EITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA----KS 1125
             I  +K   + +    GF G  H + + DD   V  +  +  K G+ VTAR+I     K+
Sbjct: 658  TIKAVKATHVVVTLADGFVGCFHASRILDD-VPVGTSPTTTLKAGKKVTARVIGGRDVKT 716

Query: 1126 NK--PDMKKSF---LWELSIKPSML 1145
            +K  P     F   + ELS++PS L
Sbjct: 717  SKFLPISHPRFVLTILELSVRPSEL 741



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 2/168 (1%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
            +  D+    +V+G V  +   G  + +  ++   V   +L+D  +++PEK++  G  V  
Sbjct: 53   RYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKC 112

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
            RVL  +P +K++ +TLK +   T+    I       +G    G I RV+ YG  +   N 
Sbjct: 113  RVLLCDPEAKKLIMTLKKT-LVTSKLPFITWYEGAKLGLQTHGVIIRVKDYGCIVKFYN- 170

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            +L GL    ELS   + + ET++  G+ VKV +L  +  K R+ L  +
Sbjct: 171  DLQGLVPKHELSNPAIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFR 218



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 148/360 (41%), Gaps = 38/360 (10%)

Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
           G +V   V +I   G+++       G V   HL +     N +  Y+   +V  R+L  D
Sbjct: 60  GTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIM-MKNPEKKYSPGDEVKCRVLLCD 118

Query: 382 PTSRAVGLTLNPYLLHNRAP------------PSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
           P ++ + +TL   L+ ++ P             +H  +  + D   +V+    L  L  +
Sbjct: 119 PEAKKLIMTLKKTLVTSKLPFITWYEGAKLGLQTHGVIIRVKDYGCIVKFYNDLQGL--V 176

Query: 430 PSTPVSTPAYVTISDV-AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488
           P   +S PA      V    +V K+     E S  R+ +L FR    L+    K    E 
Sbjct: 177 PKHELSNPAIPDPETVFYTGQVVKVAVLSCEPSKERM-LLSFRL---LSDSRPKDPGVES 232

Query: 489 LVFTHSDVKPGMVVKGKVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKP--GKKFKV 545
                  V+ G +V  KV+     G  +   P    A  P PH+S+     P      + 
Sbjct: 233 SQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHNTPAFLPTPHLSDHAANGPLLHHWLQT 292

Query: 546 GAELVFRVLGVKSKRITVTHKKTLVKSKLAILS---------SYAEATDRLITHGWITKI 596
           G  L  RVL      ++ + +  L+  K A++S         S +E    ++  G++  I
Sbjct: 293 GDTL-HRVLC-----LSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCI 346

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
           +++G FV+F +G+ G +P++ +       PS  +  GQ V  ++ +   + +R+ LS  +
Sbjct: 347 KEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRL 406



 Score = 45.4 bits (106), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 80/383 (20%), Positives = 161/383 (42%), Gaps = 38/383 (9%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            +G++V+  +  IKP  + +K G    G +    + D    +++N    +  G  V  R++
Sbjct: 59   IGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLAD---IMMKNPEKKYSPGDEVKCRVL 115

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC--DVSIGQRVTGYVYKVDNEWAL 1180
                 P+ KK  +   ++K +++T     SKL F        +G +  G + +V +   +
Sbjct: 116  L--CDPEAKKLIM---TLKKTLVT-----SKLPFITWYEGAKLGLQTHGVIIRVKDYGCI 165

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
            +     L  Q  +         + + +  F+ G+ V   VLS    K+ + L  R   D 
Sbjct: 166  VKFYNDL--QGLVPKHELSNPAIPDPETVFYTGQVVKVAVLSCEPSKERMLLSFRLLSDS 223

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH-LYGRVHFTELKNICV 1299
                    S+      +  G +V  ++  +     GL V I PH     +    L +   
Sbjct: 224  RPKDPGVESSQKKTGAVRIGQLVDVKV--LEKTKTGLEVAILPHNTPAFLPTPHLSDHAA 281

Query: 1300 SDPLSGY--DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1357
            + PL  +    G  +  +VL +S++ R   H+ L  + +L  +S+             G+
Sbjct: 282  NGPLLHHWLQTGDTLH-RVLCLSQSER---HILLCRKPAL--VSTVEG----------GQ 325

Query: 1358 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1417
              + + ++ P M++ G+VK +   G F+     L      + +SD +V +P + F  G+ 
Sbjct: 326  DPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQT 385

Query: 1418 VAGRVLSVEPLSKRVEVTLKTSD 1440
            V  +V +V+   +R+ ++L+ SD
Sbjct: 386  VVAKVTNVDESKQRMLLSLRLSD 408



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 165/426 (38%), Gaps = 42/426 (9%)

Query: 1111 FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            FK G T    II  S   ++   FL +  I    L              D+ IG  V G 
Sbjct: 18   FKPGSTHKCXIIDYSQMDELALLFLRKSIIAAPFLRYH-----------DIKIGTVVKGT 66

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
            V  +     L+ +   +K    +         ++  ++++  G  V   VL  + E K L
Sbjct: 67   VLAIKPFGILVKVGEQIKG--LVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKL 124

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQIGPHLYGR 1288
             + L+        KT+  S     T+ +EG  +G +   ++  V   G +V+    L G 
Sbjct: 125  IMTLK--------KTLVTSKLPFITW-YEGAKLGLQTHGVIIRVKDYGCIVKFYNDLQGL 175

Query: 1289 VHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDL 1348
            V   EL N  + DP + +  GQ VK  VL    +        LS R     +S +   D 
Sbjct: 176  VPKHELSNPAIPDPETVFYTGQVVKVAVLSCEPSKERML---LSFRL----LSDSRPKDP 228

Query: 1349 STDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVES 1407
              +        +K   +    +V   V   T  G  + +L     A +   +LSD     
Sbjct: 229  GVESSQ-----KKTGAVRIGQLVDVKVLEKTKTGLEVAILPHNTPAFLPTPHLSDHAANG 283

Query: 1408 P--EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQ 1464
            P        G  +  RVL +    + + +  K +   T    +   +LS +  G ++IG 
Sbjct: 284  PLLHHWLQTGDTLH-RVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLLIGF 342

Query: 1465 IKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1524
            +K ++ YG+F+   +  L GL   + +S+  V      +  G+ V  K+  VD+ K+R+ 
Sbjct: 343  VKCIKEYGVFVQFPS-GLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRML 401

Query: 1525 LGMKSS 1530
            L ++ S
Sbjct: 402  LSLRLS 407


>gi|255724334|ref|XP_002547096.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134987|gb|EER34541.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 1722

 Score =  226 bits (576), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/276 (41%), Positives = 174/276 (63%), Gaps = 9/276 (3%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L   AP++  +FERL+  +PNSS +W+ YM+F L ++++EKAR I +RAL+TIN REE E
Sbjct: 1447 LNTRAPQSVSDFERLLIGNPNSSILWMNYMSFQLQLSEIEKAREIGQRALKTINYREEQE 1506

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLNIW+A  NLEN +G   +E +  VF++A+QY D   +H  L+ +Y  +E+   A EL 
Sbjct: 1507 KLNIWIAMLNLENTFG--TDETLEDVFKKAVQYMDAFVIHQKLVNIYIISEKFDQAIELF 1564

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
              M KKF  +   W+     LL Q+  + V  V+ +AL  LP+  HI+ + + A LEF+ 
Sbjct: 1565 KVMTKKFGKNISTWVMYGSFLLDQKLNDEVHEVLSKALSILPKRDHIELVKKFAQLEFQK 1624

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD------LIRGLFERAISLSLPP 1885
            G  ++GRS+FEG++++ PKR DLW+IY+DQEI+    +       +  LFER ++  +  
Sbjct: 1625 GDPEQGRSLFEGLIADAPKRIDLWNIYIDQEIKQDKEEDESSKGKVEELFERVLTKKITR 1684

Query: 1886 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            K+ KF F K+L +E+   +E  I  VK KA EYV++
Sbjct: 1685 KQAKFFFNKWLNFEEDKEDESMIARVKAKAAEYVQN 1720



 Score =  193 bits (490), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 209/840 (24%), Positives = 373/840 (44%), Gaps = 79/840 (9%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVE---RGLHKKNKKKKKKTERKANETVDDLG 108
           FPRGG   L+  E  EI  E   D  FE  E   R    K+++ KKK  +++++     G
Sbjct: 16  FPRGGSKPLSALEVKEISNEAIKDVLFEQAETNKRSGSSKSEQPKKKQRKQSSKKKSTKG 75

Query: 109 SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGL-------A 161
               D    K          KNI  G  + G +  +N+ D+ + L   L G        A
Sbjct: 76  DQDVDDADDKKSVSIENFNFKNIGHGTLILGQIKAINKLDITLALGDNLVGYIPITSISA 135

Query: 162 RAADALDPI---------------------------LDNEIEANEDNLLPTIFHVGQLVS 194
           +    L+                                E E  E   L +IF +G  + 
Sbjct: 136 QITKLLEEFDHESSEEEDEEEEKEEDDDGETVATVKFKTEKEFPE---LSSIFKIGSWLK 192

Query: 195 CIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL 254
             V   ++D K   K++I L++    + + L  + +    +L   VKS+EDHG IL  G 
Sbjct: 193 AKVSSSNEDIKT--KKRIQLTVEPEFVNESLETDDLIINNILQCSVKSVEDHGIILDTGK 250

Query: 255 PSFTGFLPRNNLAE-NSGID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLK 312
             ++GF+    L+  N  +D +KPGL++   + S    R +    +   ++ K     + 
Sbjct: 251 SEYSGFISNKELSNANLEVDSIKPGLVILCAISSKVSGRTINLKPTSSVSIKKGAVTTIS 310

Query: 313 GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK 372
             SID +  G++V   +  I +NG++        GT+ +  + N F   + K+ Y     
Sbjct: 311 --SIDSIQAGVVVDALINEITDNGLITKVYGLVDGTIALSQIHN-FDIKDLKHKYAIGTN 367

Query: 373 VNARILFV--DPTSRAVGLTLNPYLLHNRAPPSHVK------VGDIYDQSKVVRVDRGLG 424
           V AR+L V     ++ + L++ P++L      +  K      VG ++D+ KV+  D    
Sbjct: 368 VKARVLAVLSKNGTKKLILSILPHVLQLGNHSAEEKALEAFPVGHVFDKVKVIGNDTNYL 427

Query: 425 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 484
            +    ST +       I D       K    Y  GS  + R++GF  ++ L     ++ 
Sbjct: 428 YVEFGSSTMIGQVHNSKIDD------DKTLLDYTVGSTHKSRVVGFNAVDNLLILTFESK 481

Query: 485 AFEGLVFTHSDVKPGMVVKG-KVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGK 541
             E       D+  G ++   +++ V   GA   V+     K   P   MS+ ++V P +
Sbjct: 482 IIEAKYLKAQDIPIGTLLSNVEILKVLEGGAGINVKVFDDFKGFVPSNQMSDIKLVYPER 541

Query: 542 KFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEATDRLITHGWITKIEKHG 600
           KF+VG+++  R+L +K KRI +T +K+LV      ILS + +A     T+  + K   +G
Sbjct: 542 KFRVGSKVKGRLLDIKGKRIYITLRKSLVNLEDDEILSRFDQAEIGFKTNAIVEKFVPNG 601

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-- 658
           C V+F+  ++ F P++E+        S+   +GQ+VK R++       R+ ++       
Sbjct: 602 CIVKFFGNLRAFLPKTEISETFVDNASNYLKLGQIVKVRVLDINKDEERLIVTLKQSSEL 661

Query: 659 TRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVM 714
           +   ++++ KL    S+V+ V+   T ++++V  + +   +G +    L+D + E    +
Sbjct: 662 SNAQKNEISKLESGKSVVNAVIVEKTKDSILVE-LEESNLRGVVADGQLSDGNYEQNRSL 720

Query: 715 KSVIKPGYEFDQLLVLDNE--SSNLLLSAKYSLINSA--QQLPSDASHIHPNSVVHGYVC 770
              +K G +  ++L+LD +  +  ++ +AK SLI +A  +  P+D + I  N VV GY+ 
Sbjct: 721 AKKLKVGEKL-EVLILDKDLKARTVIATAKPSLIEAAKGKSFPTDFNDIQINKVVKGYIK 779

Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           ++   G FV F GRLTG           + DL+K +Y  QSV   ++ ++ E  R  L+L
Sbjct: 780 SVTNLGLFVTFTGRLTGLVLAKYVTKNGKEDLTKKFYKYQSVTCRVISIDQENERFLLTL 839



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 103/228 (45%), Gaps = 7/228 (3%)

Query: 442  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK--ASAFEGLVFTHSDVKPG 499
            I+D  E    KL+  Y++   V  R+L         +  L+  A A + ++ + SD++ G
Sbjct: 1092 ITDALENYSDKLDHVYEQNDYVSARVLDIDEDNKRISVSLRDDAEAADKVINSVSDLERG 1151

Query: 500  MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK 559
             V+KG +  + + G  V     + AL  +  +S+  +    K FK    ++ +++  K +
Sbjct: 1152 HVIKGFIKNIANNGVYVSLGRSIHALVRVSDLSDSYLKDWKKFFKPNQMVIGKIVNCKEE 1211

Query: 560  -RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQGFAPRS 616
             R+ +T K++ V  +L ++ S+ + +   I  G +T     G FV+      V G    S
Sbjct: 1212 GRVLMTLKESEVNGELKLMKSFDDLSVGDIFEGTVTSTTDFGVFVKLDGTVNVSGLCHHS 1271

Query: 617  ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
            E+  +       ++  G  VK +I+     S +  LS  MK +  +ED
Sbjct: 1272 EISENDVENVKMLFGDGDRVKVKILK--IDSEKKQLSLGMKASYFAED 1317



 Score = 44.3 bits (103), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 146/356 (41%), Gaps = 44/356 (12%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 278
            L LE V+ G  L  +V +I   G +     PS  G +   +L  +  I  D+      G 
Sbjct: 971  LKLEDVKVGDKLLGFVNNIA-KGLVWVSISPSLKGRVSFLDLTNDGSIFQDIDNKLPIGS 1029

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
             ++  V+ +D   K + L++    V K           D +V G     RV  I  N V+
Sbjct: 1030 AIKVTVKQVDLEHKTLSLTTRDKFVEK----------FDDVVKGETYPARVLKIKPNHVL 1079

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 398
            +        +  I      + +    + Y Q+  V+AR+L +D  ++ + ++     L +
Sbjct: 1080 VELGPDVIASSFITDALENY-SDKLDHVYEQNDYVSARVLDIDEDNKRISVS-----LRD 1133

Query: 399  RAPPSHVKVGDIYDQSKVVRVDRG---LGLLLDIPSTPV------STPAYVTISDVAEEE 449
             A  +   +  + D      ++RG    G + +I +  V      S  A V +SD+++  
Sbjct: 1134 DAEAADKVINSVSD------LERGHVIKGFIKNIANNGVYVSLGRSIHALVRVSDLSDSY 1187

Query: 450  VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKV 506
            ++  +K +K    V  +I+  +  EG     LK S   G   L+ +  D+  G + +G V
Sbjct: 1188 LKDWKKFFKPNQMVIGKIVNCKE-EGRVLMTLKESEVNGELKLMKSFDDLSVGDIFEGTV 1246

Query: 507  IAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
             +   FG  V+  G   V  LC    +SE ++      F  G  +  ++L + S++
Sbjct: 1247 TSTTDFGVFVKLDGTVNVSGLCHHSEISENDVENVKMLFGDGDRVKVKILKIDSEK 1302


>gi|388855273|emb|CCF51167.1| related to RRP5-processing of pre-ribosomal RNA [Ustilago hordei]
          Length = 1566

 Score =  225 bits (574), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 116/270 (42%), Positives = 176/270 (65%), Gaps = 4/270 (1%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L   AP +  +FERL+  SPNSSF+WI++M+F L ++DV+KARSIA RAL+ IN REE E
Sbjct: 1282 LASKAPESATDFERLLLGSPNSSFLWIQFMSFALQLSDVDKARSIARRALKVINYREEQE 1341

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            ++N+W+A  NLEN YG+  EE +   F+ A+Q  D   ++L ++ + E + +   A+E+ 
Sbjct: 1342 RMNVWIALLNLENTYGS--EETLESTFKEAVQANDGFTMYLKMVNILEASNKISGAEEMF 1399

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
             K   K+  S + W+   +  L+  Q  + +A++ RA+ +L + +H   I+  AI EFK 
Sbjct: 1400 TKAKGKYSTSPEFWMEYARFYLRTSQPDLSRALLPRAMQALEKREHTYTITAFAINEFKL 1459

Query: 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-GDVDLIRGLFERAISLSLPPKKMKF 1890
            G  +RGR++FEG++  YPKR DLW  Y+DQE RL G+ + +R LFERA++L L  KK K 
Sbjct: 1460 GDPERGRTIFEGLVDSYPKRLDLWWQYIDQESRLEGNQEQVRNLFERAMTLKLTAKKGKS 1519

Query: 1891 LFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            L KK+LEYEK  G+ +  + V  +A E+V+
Sbjct: 1520 LLKKWLEYEKKNGDGKSQQKVIGRAKEFVD 1549



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 151/560 (26%), Positives = 256/560 (45%), Gaps = 53/560 (9%)

Query: 183 LPTIFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSLETV 230
           L  +FHVGQ +   V+Q+       G+            R++ LSL   L+  G++L  +
Sbjct: 236 LRDLFHVGQWLVASVVQVRGGDVAKGRPTREGGEYEKESRRVELSLAPHLVNTGVTLSDL 295

Query: 231 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE--NSGIDVKPGLLLQ------G 282
             G  L+A + S+EDHGY+L  G+P F GF+P  + A+  +S    K G LLQ       
Sbjct: 296 DAGATLSASISSVEDHGYMLDSGIPEFRGFVPFADAAKLPSSFHARKNGKLLQVGSVVFA 355

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            +  I   R+    + DP TVS    K +   SI  ++PG +    + + L  G+ +   
Sbjct: 356 KITKIPENRRSFEATFDPKTVSTSPIKHVP--SITSILPGTLTKVLITAALPTGLNVKLF 413

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 389
             F  T+D FHL       + ++ Y +  K  AR+L+  + P S           R  GL
Sbjct: 414 GMFDATIDRFHLPQLPEGKDIQDVYKEGSKHVARVLWDLLAPPSTALQGDNPDHERKFGL 473

Query: 390 TLNPYLLHNRAPPS-------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 442
           +L P +L  +AP +       H        + KVV+     GL++ I +T +    +V I
Sbjct: 474 SLAPQVLALQAPVAKDQQLLQHAYPIGAPLKVKVVQTINDWGLIVSIHNTDLR--GFVHI 531

Query: 443 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           S V+++ V  L      + +G+  + R++G    +      LKAS  E      S+V+ G
Sbjct: 532 SQVSDDHVVSLPPSSGPFAKGTEHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVG 591

Query: 500 MVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
            +V   +I +     I +Q  G V  +    H ++ ++  P K+FK G ++  RV+ V  
Sbjct: 592 EIVNANIIKLGLPNTIFLQLHGHVDGVVFANHFADVKLTHPEKRFKPGLQVKARVMDVDP 651

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
              RI +T KK+LVKS L I++S  +A   ++TH  + +++ +   V  + G++   P  
Sbjct: 652 SRNRIVLTCKKSLVKSDLPIVASMQDARVGVVTHATVFRVQTNSLIVSLFGGLKALVPGR 711

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---DLVKLGSLV 673
           E+  D   +    +  G+VVK RI      ++++  S     +        D V++G  V
Sbjct: 712 EVSEDDFNDVKDSFTEGKVVKMRITEVDYENQKLVGSIKQASSEYLAKLNVDAVEVGEKV 771

Query: 674 SGVVDVVTPNAVVVYVIAKG 693
           +G V  V    VV+ ++  G
Sbjct: 772 TGKVAAVHKEVVVLSLVPSG 791



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 147/668 (22%), Positives = 258/668 (38%), Gaps = 101/668 (15%)

Query: 240  VKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP--GLLLQGVVRSIDRTRKVVYLS 297
            V++I D G I+        GF+  + ++++  + + P  G   +G     +   +VV  S
Sbjct: 508  VQTINDWGLIVSIHNTDLRGFVHISQVSDDHVVSLPPSSGPFAKGT----EHKARVVGHS 563

Query: 298  SDPDTVS---KCVTKDLKGISIDLLVPGMMVSTRVQSI-LENGVMLSFLTYFTGTVDIFH 353
                T+    K    + K + +  +  G +V+  +  + L N + L    +  G V   H
Sbjct: 564  PTDRTLQLSLKASVLERKFMRVSEVEVGEIVNANIIKLGLPNTIFLQLHGHVDGVVFANH 623

Query: 354  LQN---TFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP--------- 401
              +   T P   +K       +V AR++ VDP+   + LT    L+ +  P         
Sbjct: 624  FADVKLTHPEKRFKPGL----QVKARVMDVDPSRNRIVLTCKKSLVKSDLPIVASMQDAR 679

Query: 402  ---PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 458
                +H  V  +   S +V +  GL              A V   +V+E++   ++  + 
Sbjct: 680  VGVVTHATVFRVQTNSLIVSLFGGL-------------KALVPGREVSEDDFNDVKDSFT 726

Query: 459  EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD-VKPGMVVKGKVIAVDSFGAIVQ 517
            EG  V++RI    +      G +K ++ E L   + D V+ G  V GKV AV     ++ 
Sbjct: 727  EGKVVKMRITEVDYENQKLVGSIKQASSEYLAKLNVDAVEVGEKVTGKVAAVHKEVVVLS 786

Query: 518  F-PGGVKALCPLPHMSEFEIVKPG---KKFKVGAELVFRVLGVK--SKRITVTHKKTLVK 571
              P GV+AL  L  ++           +  +   E+   V+ VK  +K I +   K    
Sbjct: 787  LVPSGVRALLSLSVLAAMRGTTSEALLESLEEDHEIEDLVVSVKNPAKGIVIVADKVRSG 846

Query: 572  SKLAILSSYAEATDRLITHGWITK---IEKHG----CFVRFYNGVQGFAPRSELGLDPGC 624
                  ++   AT   +  G + +   IEK+     C V      +     ++L  +   
Sbjct: 847  KSTDHSAANGTATSAQVKQGAVVQGRVIEKNSKYLDCIVALGTATRAKLHITDLSDNYSS 906

Query: 625  EPSSMYHVGQVVKCRIMSSIP----------ASRRINLSFMMKPTRVSEDDLVKLGSLVS 674
            + S++ + GQ V C I+S  P           SR      ++ P   S  DL K G  + 
Sbjct: 907  DSSTLPNPGQSVLCYILSLKPNGKSAVISTRPSRTTGSGGIVDPEISSISDLTK-GQKIR 965

Query: 675  GVVDVVTPNAVVVYVIAKGYSKGTI-----------PTEHLADHLEHATVMKSVIKPGYE 723
            G V  +T   + + +  K  ++  +            T      +   T+M   + PG  
Sbjct: 966  GFVKAITNVGLFITIGRKLDARVQVRELFDEFVRDWKTRFTLGQVVSGTIMD--LNPG-- 1021

Query: 724  FDQLLVLDNESSNLLLSAKYSLINSAQ-----------QLPSDASHIHPNSVVHGYVCNI 772
                   +NE    L S   S+   A+           Q P   +       V G++ NI
Sbjct: 1022 -------NNEVEMSLKSTPGSIKPRAEKVEERAQAMQKQRPKRLTDFKVGDKVKGFIKNI 1074

Query: 773  IETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            I  G FV+  G  ++G A  ++  DG+  +  K + VG  VR+ +L VN E  +I+  LK
Sbjct: 1075 IGFGVFVQIEGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRVNEEKRKISFGLK 1134

Query: 832  QSCCSSTD 839
             S   + D
Sbjct: 1135 PSYFDAAD 1142



 Score = 45.1 bits (105), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 18/187 (9%)

Query: 765  VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
            + G+V  I   G F+    +L       +  D    D    + +GQ V   I+D+N    
Sbjct: 964  IRGFVKAITNVGLFITIGRKLDARVQVRELFDEFVRDWKTRFTLGQVVSGTIMDLNPGNN 1023

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
             + +SLK     ST  S       +EE+   +Q  +      K +  F +G  ++G +  
Sbjct: 1024 EVEMSLK-----STPGSIKPRAEKVEERAQAMQKQRP-----KRLTDFKVGDKVKGFIKN 1073

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLS 937
               FGV V   E ++V G    ++L+    +        G  ++A +L V + +R +   
Sbjct: 1074 IIGFGVFVQI-EGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRVNEEKRKISFG 1132

Query: 938  LKTVFID 944
            LK  + D
Sbjct: 1133 LKPSYFD 1139


>gi|321258889|ref|XP_003194165.1| rRNA processing-related protein [Cryptococcus gattii WM276]
 gi|317460636|gb|ADV22378.1| rRNA processing-related protein, putative [Cryptococcus gattii WM276]
          Length = 1486

 Score =  225 bits (573), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/265 (41%), Positives = 173/265 (65%), Gaps = 3/265 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P +  E+ER + +SPNSSF+WI+YM+F L + ++EKAR I  +AL+ I+ REE+EKLN+W
Sbjct: 1208 PSSTAEYERALLASPNSSFLWIQYMSFHLQLHEIEKARKIGRQALEKISYREEDEKLNVW 1267

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            +A  NLE  +G     A  KVF+ A QY D + V++      +   +++  +EL  K++K
Sbjct: 1268 MALINLEIAFGTV--SATEKVFEEAAQYNDKRTVYMRYAEALQVAGKDEALEELFKKIVK 1325

Query: 1778 KFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
            KF    + W R  +  L K   E  +A++ R++ SL R KH++ I + A+LEFK+G  +R
Sbjct: 1326 KFSAYPESWTRFAEFYLNKSDVEAARALLPRSMKSLDRSKHVETIEKMALLEFKHGDTER 1385

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
            G+++FEG++ ++PKR DLW +Y+DQ  ++GD+  +RGL +RA+   L  KK KFLFKK+L
Sbjct: 1386 GKTLFEGLVDKFPKRLDLWGVYIDQVAKVGDIQGVRGLVDRALEQKLTSKKAKFLFKKWL 1445

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVES 1921
              E+ +G+    +  K KA E+VE+
Sbjct: 1446 TIEQRIGDVAGQDKAKTKAREWVEA 1470



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 193/782 (24%), Positives = 349/782 (44%), Gaps = 82/782 (10%)

Query: 20  NKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQ------RERDEIHAE 73
           +KA+KN  K S         A    L  D+    FPRGGG +LT       RE     AE
Sbjct: 12  DKATKNTQKESLSGAPRPAPAFTSTLQSDETN--FPRGGGSTLTAFEFKQVREEGRREAE 69

Query: 74  VDAEFEAVERGLHKKNKKKKKKTER-KANETVDDLGSLFGDGISGKLPRYANKITLKNIS 132
            DA+ +A  +G  +K +   ++ +R K NE          D I  ++  Y      K + 
Sbjct: 70  NDAKLQA-SKGEKRKRQMSDRQAKRLKKNEDAKKKEERDKDNIRVEILNY------KRLV 122

Query: 133 AGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNE--------IEANEDN 181
            G  +   V  V    L++ LP  L     +   ++ L  +L  E         E+++++
Sbjct: 123 PGTHVLARVHTVLPLHLILSLPNNLLAHVPITEVSNTLTKLLTAEEAMVVDEDEESDDES 182

Query: 182 LLP---TIFHVGQLVSCIVLQLDDDKKE--IGKRKIWLSLRL------SLLYKGLSLETV 230
            +P    +F  GQ V   VL L     +  I +  +  + RL      +L+ + ++ E  
Sbjct: 183 TVPDLAQLFVPGQYVPAKVLTLYPTASQSFISQYPVTETTRLASRVELTLVPEKVNSEVA 242

Query: 231 QE----GMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRNNLAEN-SGIDVKPGLLL 280
           ++    G  L   V+S ED G+I+  GL      S  GF+ ++ +A+      + PG LL
Sbjct: 243 KKDLETGYFLVGEVRSEEDKGWIIGVGLNTENGSSVEGFVSKDEVAKFVPAQALIPGQLL 302

Query: 281 QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
              + SI    +VV+LS +   +++    ++   ++  +VPG  V+  + +++ +G+ + 
Sbjct: 303 PATISSIAAGGRVVHLSLNQQDIARSQISEVS--TVGSIVPGHSVNALITAVVPSGLNVK 360

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF----VDPTSRAVGLTLNPYLL 396
              +F GT+D+ HL       + ++ Y   KK+ AR+++     +P S A  L+  P++L
Sbjct: 361 VAGFFDGTIDLAHL--PLGDDDIEDKYKIGKKIRARVIYDNLAANPHSFA--LSALPHVL 416

Query: 397 HNRAPPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
           +  +P            + +G +Y  +KV RV    G+++    T      +V IS +A+
Sbjct: 417 NLTSPTQEGDDTPLELAIPIGKVYQSAKVTRVLNDWGVMV---RTQDGLEGFVHISHLAD 473

Query: 448 EEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           E +  L     ++K G+  R R++G   ++G+     + S    L    S++K G  ++G
Sbjct: 474 ERIPVLSNATPQFKVGTLHRARVIGHSPMDGVLLLSFEQSVLSQLFMQVSELKIGQQLRG 533

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRIT 562
            +  +      V   G V  +    H ++  +  P K+FK  A +  RVL ++    R+ 
Sbjct: 534 TIRRLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEASVKARVLYLEPARNRVV 593

Query: 563 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 622
           +T KKT ++S LA+  S+ +     +T G + KI   G  V  + G++ F P SE     
Sbjct: 594 LTLKKTFLESDLAVPQSFEDLKVGEVTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTH 653

Query: 623 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVV 680
             + S  ++VG+ +  R+++  P++ RI +S              KL  G  VSG V  V
Sbjct: 654 IKDLSEAFYVGKPLTVRVITLDPSTSRIVVSVKQAAPTAPATAAEKLEVGEAVSGTVSQV 713

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPGYEFDQLLVLD-NESSNL 737
               VVV +   G     +   +L++   H  +  ++  +K G + D L+V+  N  S L
Sbjct: 714 HTEQVVVKLEGSGLI-ALLSLSNLSNQ-RHTGIEELRRSLKQGEKIDDLVVVSKNPVSGL 771

Query: 738 LL 739
           ++
Sbjct: 772 II 773



 Score = 67.4 bits (163), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 18/243 (7%)

Query: 600 GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
           G  VR  +G++GF   S L    +      +  + VG + + R++   P    + LSF  
Sbjct: 453 GVMVRTQDGLEGFVHISHLADERIPVLSNATPQFKVGTLHRARVIGHSPMDGVLLLSFEQ 512

Query: 657 KP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEH 710
                   +VSE   +K+G  + G +  +T    +++V   G   G +   H AD  L+H
Sbjct: 513 SVLSQLFMQVSE---LKIGQQLRGTIRRLTDK--MLFVNVHGNVDGIVHPTHYADIRLKH 567

Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
               +   KP      ++L L+   + ++L+ K + + S   +P     +    V  G V
Sbjct: 568 P---QKRFKPEASVKARVLYLEPARNRVVLTLKKTFLESDLAVPQSFEDLKVGEVTLGSV 624

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             I++ G  V     L  F P S+       DLS+ +YVG+ +   ++ ++  T RI +S
Sbjct: 625 LKIVDKGVIVELFAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITLDPSTSRIVVS 684

Query: 830 LKQ 832
           +KQ
Sbjct: 685 VKQ 687



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 108/514 (21%), Positives = 216/514 (42%), Gaps = 63/514 (12%)

Query: 367  YNQHKKVNARILFVDPTSRAVGLTLNPYLLHN--RAPPSH--VKVGDIYDQSKVVRVDRG 422
            +     V AR+L+++P    V LTL    L +    P S   +KVG++   S +  VD+G
Sbjct: 572  FKPEASVKARVLYLEPARNRVVLTLKKTFLESDLAVPQSFEDLKVGEVTLGSVLKIVDKG 631

Query: 423  LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 482
            +     I        A++  S+ ++  ++ L + +  G  + VR++            +K
Sbjct: 632  V-----IVELFAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITLDPSTSRIVVSVK 686

Query: 483  ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEF------E 535
             +A          ++ G  V G V  V +   +V+  G G+ AL  L ++S        E
Sbjct: 687  QAAPTAPATAAEKLEVGEAVSGTVSQVHTEQVVVKLEGSGLIALLSLSNLSNQRHTGIEE 746

Query: 536  IVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI---------LSSYAEATDR 586
            + +  K+ +   +LV       S  I V  KKT+   K            +S+  +A D 
Sbjct: 747  LRRSLKQGEKIDDLVVVSKNPVSGLIIVNIKKTIAAKKEKEKKEDKAPSGISANVKAIDA 806

Query: 587  L----ITHGWITKIEKHGCFVRFYNGVQGFA----PRSELGLDPGCEPSSMYHVGQVVKC 638
            +    I  G + +    G  ++  N ++G         +L +  G  P S   +G+ V C
Sbjct: 807  IEVGQIVTGTVQEQTPQGYMIQLPNNLRGRVHPCDSSDDLVVAAGRGPLS---IGEEVTC 863

Query: 639  RIMSSIPASRRINLSFMMKPTRVSED---------DLVKLGSLVSGVVDVVTPNAVVVYV 689
             +++   + R I+LS  +      ED         D +K G  V G+V  +  + V V  
Sbjct: 864  YVLAVNKSKRAIDLSTRLSRVEGKEDVVDREINTVDDLKQGETVRGLVKNIAGHGVFVS- 922

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-----LVLDNESSNLLLSAKYS 744
            + +  +   +  E   ++++         +  +E +QL     L ++ +S+++ ++ + +
Sbjct: 923  LGRNVTARIMIKELFDEYVKD-------WESRFEINQLVSGKILSINPKSNSIEMTLRKN 975

Query: 745  LINSAQQLP-SDASHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADL 802
               SA++      S       V   V  +   G F++  G  ++G   +S+  D ++AD+
Sbjct: 976  PSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEVTDNRKADV 1035

Query: 803  S---KTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            +   K +  G  V++ I+ +++E G+I+  +K S
Sbjct: 1036 AQALKGFREGDQVKAKIVSIDTEKGKISFGIKAS 1069



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 99/206 (48%), Gaps = 11/206 (5%)

Query: 285  RSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTY 344
            R+ID + ++  +    D V + +       ++D L  G  V   V++I  +GV +S    
Sbjct: 873  RAIDLSTRLSRVEGKEDVVDREIN------TVDDLKQGETVRGLVKNIAGHGVFVSLGRN 926

Query: 345  FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH 404
             T  + I  L + +   +W++ +  ++ V+ +IL ++P S ++ +TL      +    + 
Sbjct: 927  VTARIMIKELFDEY-VKDWESRFEINQLVSGKILSINPKSNSIEMTLRKNPSKSAKKTAL 985

Query: 405  VKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLEKKYKEG 460
            + + D  +  KVV V R     G+ L I  + VS   + + ++D  + +V +  K ++EG
Sbjct: 986  LSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEVTDNRKADVAQALKGFREG 1045

Query: 461  SCVRVRILGFRHLEGLATGILKASAF 486
              V+ +I+     +G  +  +KAS F
Sbjct: 1046 DQVKAKIVSIDTEKGKISFGIKASYF 1071


>gi|403353839|gb|EJY76463.1| S1 RNA binding domain containing protein [Oxytricha trifallax]
          Length = 2023

 Score =  223 bits (568), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 115/321 (35%), Positives = 201/321 (62%), Gaps = 25/321 (7%)

Query: 1626 DEKNNRHAKK--KEKEEREQEIRAAEERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYM 1682
            D K  +  K+  K++ + EQEIR  E+ L + K+ P+T +++ERL+  + + S+VWI+YM
Sbjct: 1689 DNKKKQSGKQSLKQRVKEEQEIRKKEKSLKDNKEQPKTIEDYERLIVQNKDQSYVWIQYM 1748

Query: 1683 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1742
            AFM+    +E AR + ERA+++++I  E +K N+W+AY NLEN +G   +E + KV +RA
Sbjct: 1749 AFMIDKLGLESARKVVERAVKSVSISNEEDKFNLWIAYMNLENNFGT--QETLEKVIKRA 1806

Query: 1743 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ-----RLLKQQ 1797
            L+  D K+++L L+ +Y+ +++ +  +E+   + KK+  S K+W   ++     R LK+ 
Sbjct: 1807 LEVNDRKRIYLQLISIYQASQKYQYIEEIYKSLCKKYNTSLKIWSAYLEFLFTMRDLKKD 1866

Query: 1798 QEGV----------QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE 1847
            +             + V+QRAL SLP+ +H+  IS+   LEFK+G  + GR+M EGI++ 
Sbjct: 1867 KSNFLVKEVTVAEPKQVLQRALQSLPKDEHVNIISKYGQLEFKHGQPESGRTMLEGIVTN 1926

Query: 1848 YPKRTDLWSIYLDQEIRLG--DVDLIRGLFERAIS---LSLPPKKMKFLFKKYLEYEKSV 1902
            YPKR D+W+IY+D E +    +    R LFER ++   +   PKKMK +F+KY+E+E + 
Sbjct: 1927 YPKRMDIWAIYMDMESKYSGENKQQARHLFERCLTNEQILKKPKKMKLVFQKYMEFEMNH 1986

Query: 1903 GEEERIEYVKQKAMEYVESTL 1923
            G ++ +E ++++  +Y+E+  
Sbjct: 1987 GNKKNVEKLRERVEQYLENAF 2007



 Score =  130 bits (328), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 138/530 (26%), Positives = 239/530 (45%), Gaps = 65/530 (12%)

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL 182
           ANKI     + G      ++E+  K L++      +G   + + L  + D          
Sbjct: 128 ANKINRLKFNVGSLGLFAISEIQTKYLIVNYTRNTKGYV-SLEGLSHLADK--------- 177

Query: 183 LPTIFHVGQLVSCIVLQLDDDKKEI---GKR--KIWLSLRLSLLYKGLSLETVQEGMVLT 237
               F +GQ +   VL     K      G R  K+ L++++  L K LS E +   M+L 
Sbjct: 178 ----FKIGQFIIASVLSAGTSKYNTETSGNRNKKLQLTIQIDHLNKSLSAENLAPNMLLQ 233

Query: 238 AYVKSIEDHGYILHFGLPSFT-GFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV-- 294
             V+S E  G++++FGL   T GFLP  N  ++  I    G L+Q +++++  + KV   
Sbjct: 234 GLVESKEAKGHLINFGLKDKTKGFLPFTNDTQHLQI----GSLVQVLIKTVLASSKVAKC 289

Query: 295 -YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
            +++   +   + +  ++K I+I  L PG MV+++V  IL+NG+ L+FL  F GT+   H
Sbjct: 290 EFINQSVEEYHQYM--NVKDITIHNLKPGFMVNSKVSKILDNGIELTFLGGFKGTIFTDH 347

Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-------LHNRAPPSHVK 406
           L  + PT      Y   +K+ AR++ VDP ++ V ++L P++       ++N    S V 
Sbjct: 348 LDKSDPTK-----YKIGEKIGARVIAVDPQAQNVQMSLLPHIKQMNDKVVYNTMKQSGVH 402

Query: 407 VGDIYDQSKV----------VRVDRGLGLLLD--------IPSTPVSTPAYVTISDVAEE 448
           VG I +++ V          V+  +     L         +P          T S   ++
Sbjct: 403 VGQIIEKATVEKELYGGSYKVKFGKDQIAFLHKSHTKEDVVPEEEEEEEEIPTQSKDKKQ 462

Query: 449 EVRKLEKKYKEGSCV-RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
           +V K   + + G  + +VR+    + +GL    +K         T+ D+K G  +   V 
Sbjct: 463 KVAKKSDELEVGQKLEKVRVKEINYFDGLPILSIKEDILNSATLTYEDLKCGDYISTMVT 522

Query: 508 AV--DSFGAIVQFPGGVKALCPLPHMSEFEI-VKPGKKFKVGAELVFRVLGV--KSKRIT 562
            V  D     +Q    VK    L HM++F + V P K   +G  L  RV  V  K++ + 
Sbjct: 523 EVNEDKKFVTLQVNDFVKGRLYLEHMADFPMKVIPPKYKDLGKTLKMRVFNVDKKTRTLD 582

Query: 563 VTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            T K TL+K+K+ +  SY E       +G I    ++G  V+ + G++G 
Sbjct: 583 FTRKDTLLKAKVPVYQSYREVEKGSKLYGVIVGENEYGYVVKSFGGIKGL 632



 Score = 97.4 bits (241), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 169/738 (22%), Positives = 303/738 (41%), Gaps = 100/738 (13%)

Query: 738  LLSAKYSLINSAQQLP---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
            ++S++Y LI     +P   +D S    N +  G V    ++G  V+FL  L         
Sbjct: 807  IISSQYDLIQLKDSIPRKNADISTDAINRIFTGVVSESNKSGVMVKFLDGLKKLVIIKDL 866

Query: 795  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 854
               Q  + S+ Y  G+ VR  +  +N       L LK +     D + +Q+    ++++ 
Sbjct: 867  ETVQ--NFSEIYKPGKVVRVALNKLNR------LCLKNNVIYLNDQTLIQK----DKELQ 914

Query: 855  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI-THHQLAGAT 913
            +        ++LK  E   IG  I+G++    D+G++VS E++  + GF+ + HQ++G T
Sbjct: 915  IRSFYSEIETQLKAHE-IKIGDKIQGEISLVKDYGLIVSVEKYEGLTGFVLSEHQVSGRT 973

Query: 914  VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
             + G  I   ++D+   + ++DLS      ++  E   ++ ++  K         G +Q 
Sbjct: 974  HKEGQKITCIVMDIDFEKEIIDLS------EKLAENTKSKDSKIAK---------GSNQK 1018

Query: 974  VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ--KFPQKQFLNGQSVIATVMALPSS 1031
            V  IVE+ KE+YL++S        G      YN    + P ++F  G  +   ++     
Sbjct: 1019 V--IVELNKEDYLIVSFKNNKSQFGLLMAQTYNNDHSENPNEKFTIGDELDVQIV---DQ 1073

Query: 1032 STAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP---LELRLKFGIGFH 1088
            +  G  L +   ++ +++    +     S   G LV A+I   K         +      
Sbjct: 1074 TETGFFLTIPVIVAPSKSQDKNKQVSTVSLAQGVLVNAQIKSKKHDCIYLQIQQQSQLSI 1133

Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
            GR+H  E   D      N F NF++G+TV A+++  S   D KK+F+     K  M   S
Sbjct: 1134 GRLHRIECQTD------NEFKNFQVGETVQAKVLKISQGAD-KKTFIELTRRKEHMKKTS 1186

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSE-LQEFQ 1207
             +    L E+   S+ +   G  Y                    I D  Y  S+ +Q   
Sbjct: 1187 GLDQTTL-EKTVQSMEELKNGVTYDA-----------------IITDVNYSFSQPIQISL 1228

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV------DISNDNMQTFIHEGD 1261
              F  G+     +++    +K    +L+ F  G   K         I +   +  + +G 
Sbjct: 1229 SPFVRGQISFDRIINQETLQKEGSSILQKFSPGAQIKVAYHNGQFGIVDQQGKGKLVKGQ 1288

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISR 1321
             V  R  K + G  G+ VQ+    +G +  +E     +SD + G      ++   + ++R
Sbjct: 1289 KVLARFVKEVKG-KGITVQLNEKTFGFIEISE-----ISDDIIGRVCDHQLQNSPIFVAR 1342

Query: 1322 TVRGTFHVE--LSLRSS--------LDGMSSTNSSDLSTDVDTP--GKHLEKIEDLSPNM 1369
             +    H +  LS R S        L G    ++  L  D      G    KI   +  +
Sbjct: 1343 VISFDKHDKPVLSARESILDDSKWALIGPEGKSAHFLKFDEKNQKLGNQRNKILKYTAGV 1402

Query: 1370 IVQ------GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
             +Q      GYV N++  GCFI +  +   +  L+ L+D      ++  P+G+LV  RV+
Sbjct: 1403 ALQEGDLCLGYVTNISKSGCFIQVGYQSTVRSGLNELNDDSSFDFQENMPLGRLVLCRVV 1462

Query: 1424 SVEPLS--KRVEVTLKTS 1439
             V+  +  KR  VTL+ S
Sbjct: 1463 KVDESNGQKRFNVTLRRS 1480


>gi|405120627|gb|AFR95397.1| ribosomal RNA processing protein RRP5 [Cryptococcus neoformans var.
            grubii H99]
          Length = 1483

 Score =  223 bits (568), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 109/265 (41%), Positives = 171/265 (64%), Gaps = 3/265 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P +  E+ER + +SPNSSF+WI+YM+F L + ++EKAR I  +AL+ I+ REE EKLN+W
Sbjct: 1205 PSSTAEYERALLASPNSSFLWIQYMSFHLQLHEIEKARRIGRQALEKISYREEEEKLNVW 1264

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            +A  NLE  +G     A  KVF+ A QY D + V++      +   + +  +EL  K++K
Sbjct: 1265 MALINLEIAFGTV--SATEKVFEEAAQYNDKRTVYMRYAEALQVAGKGEALEELFKKIVK 1322

Query: 1778 KFKHSCKVWLRRVQRLL-KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
            KF    + W R  +  L K   E  +A++ R++ SL + KH++ I + A+LEFK+G A+R
Sbjct: 1323 KFSAYPESWTRFAEFYLNKGDVEAARALLPRSMKSLDKSKHVETIEKMALLEFKHGDAER 1382

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
            G+++FEG++  +PKR DLW +Y+DQ  ++GD+  +RGL +RA+   L  KK KFLFKK+L
Sbjct: 1383 GKTLFEGLVDRFPKRLDLWGVYIDQVAKVGDIQGVRGLMDRALEQKLTSKKAKFLFKKWL 1442

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVES 1921
              E+ +G+    +  K +A E+VE+
Sbjct: 1443 TIEQRIGDAAGQDKAKARAREWVEA 1467



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 194/799 (24%), Positives = 347/799 (43%), Gaps = 101/799 (12%)

Query: 4   SSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLT 63
           S++K+QK+SS   P+   A  +  +N                    D   FPRGGG SLT
Sbjct: 14  STKKTQKESSSAAPRPAPAFTSTLQN--------------------DETDFPRGGGSSLT 53

Query: 64  Q------RERDEIHAEVDAEFEAVERGLHKKNKKKKKKTER-KANETVDDLGSLFGDGIS 116
                  RE     AE +A+ +A  +G  +K +   ++ +R K NE          D I 
Sbjct: 54  AFEFKQVREEGRREAEDEAKLQA-SKGEKRKRQMSDRQAKRLKKNEDAKKKEERDKDNIR 112

Query: 117 GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN 173
            ++  Y      K +  G  +   V  +    L++ LP  L     +   +D L  +L  
Sbjct: 113 VEILNY------KRLVPGTHVLARVHTILPLHLILSLPNNLLAHVPITEISDTLTQLLTA 166

Query: 174 E------------IEANEDNLLPTIFHVGQLVSCIVLQLDDDKKE--------IGKRKIW 213
           E             + +    L  +F  GQ V   VL L     +            K+ 
Sbjct: 167 EEAMVVDEGEEESDDESSAPDLAQLFVAGQYVPAKVLTLYPTASQSFISQYPVTETTKLA 226

Query: 214 LSLRLSLLYKGLSLETVQE----GMVLTAYVKSIEDHGYILHFGL-----PSFTGFLPRN 264
             + L+L+ K ++ E  ++    G  L   VKS ED G+I+  GL      S  GF+ ++
Sbjct: 227 SRVELTLIPKKVNSEVAKKDLETGYYLVGEVKSEEDKGWIVGVGLDAQDGSSVEGFVSKD 286

Query: 265 NLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 323
            +A++     + PG LL   + SI    +VV+LS D   +++    ++   ++  ++PG 
Sbjct: 287 EVAKSVPAQALVPGQLLSATISSIAAGGRVVHLSLDQQDIARSQISEVS--TVGSILPGH 344

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---- 379
            V+  + +++ +G+ +    +F GT+D+ HL       + ++ Y   KK+ AR+++    
Sbjct: 345 SVNALITAVVPSGLNVKVAGFFDGTIDLAHL--PLGEIDIEDKYKIGKKIRARVIYDNLA 402

Query: 380 VDPTSRAVGLTLNPYLLHNRAPPSH---------VKVGDIYDQSKVVRVDRGLGLLLDIP 430
            +P S A  L+  P++L+  +P            + +G +Y   KV RV    G+++   
Sbjct: 403 ANPHSFA--LSALPHVLNFTSPIQKGDDTPLELAIPIGKVYQSVKVTRVLNDWGVVV--- 457

Query: 431 STPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
            T      +V IS +A+E +  L     ++K G+  R R++G   ++G+     + S   
Sbjct: 458 RTQDGLEGFVHISHLADERIPVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQSVLS 517

Query: 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
            L    S++K G  +KG +  +      V   G V  +    H ++  +  P K+FK  A
Sbjct: 518 QLFMQVSELKIGQQLKGTIRRLTDKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEA 577

Query: 548 ELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            +  RVL ++    R+ +T KKT ++S LA+   + +     +T G + KI   G  V  
Sbjct: 578 SVKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFDDLKVGELTLGSVLKIVDKGVIVEL 637

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
           + G++ F P SE       + S  ++VG+ +  R+++  P++ RI +S            
Sbjct: 638 FAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITVDPSASRIVVSAKQASPTAPATA 697

Query: 666 LVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV--MKSVIKPG 721
             KL  G  VSG V  V    VVV +   G +   +   +L++   H  +  ++  +K G
Sbjct: 698 AEKLEVGEAVSGTVSQVHTEQVVVKLDGNGLT-ALLSLSNLSNQ-RHTGIEELRGSLKEG 755

Query: 722 YEFDQLLVLD-NESSNLLL 739
            + D L+V+  N  S L++
Sbjct: 756 EKIDDLVVVSKNPVSGLII 774



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 18/243 (7%)

Query: 600 GCFVRFYNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
           G  VR  +G++GF   S L    +      +  +  G + + R++   P    + LSF  
Sbjct: 454 GVVVRTQDGLEGFVHISHLADERIPVLSNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQ 513

Query: 657 KP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEH 710
                   +VSE   +K+G  + G +  +T    +++V   G   G +   H AD  L+H
Sbjct: 514 SVLSQLFMQVSE---LKIGQQLKGTIRRLTDK--MLFVNVHGNVDGIVHPTHYADIRLKH 568

Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
               +   KP      ++L L+   + ++L+ K + + S   +P     +    +  G V
Sbjct: 569 P---QKRFKPEASVKARVLYLEPTRNRVVLTLKKTFLESDLAVPQGFDDLKVGELTLGSV 625

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             I++ G  V     L  F P S+       DLS+ +YVG+ +   ++ V+    RI +S
Sbjct: 626 LKIVDKGVIVELFAGLKAFMPHSECSQTHIKDLSEAFYVGKPLTVRVITVDPSASRIVVS 685

Query: 830 LKQ 832
            KQ
Sbjct: 686 AKQ 688



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 131/272 (48%), Gaps = 14/272 (5%)

Query: 226  SLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGIDVKPGLLLQG-- 282
            +++ ++ G ++T  V+     GY++   LP+   G +   + +++  +    G L  G  
Sbjct: 804  AIDAIEVGQIITGTVQEQNSQGYMVQ--LPNNLRGRVHSCDSSDDLALAAGRGPLTVGEE 861

Query: 283  ---VVRSIDRTRKVVYLSSDPDTV-SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
                V +++R+++ + LS+    V  K    D +  ++D L  G  V   V++I  +GV 
Sbjct: 862  VKCYVLAVNRSKRAIDLSTRLSRVEGKENVVDREVNTVDDLKQGESVRGLVKNIAGHGVF 921

Query: 339  LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 398
            +S     T  + I  L + +   +W++ +  ++ V+ +IL ++P S ++ +TL      +
Sbjct: 922  VSLGRNVTARIMIKELFDEY-VKDWESRFEINQLVSGKILSINPRSNSIEMTLRKNPSKS 980

Query: 399  RAPPSHVKVGDIYDQSKVVRVDR---GLGLLLDIPSTPVSTPAYVT-ISDVAEEEVRKLE 454
                + + + D  +  KVV V R     G+ L I  + VS   + + ++D  + +V +  
Sbjct: 981  AKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVSGLCHKSEVTDNRKADVAQAL 1040

Query: 455  KKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
            K ++EG  V+ +I+     +G  +  +KAS F
Sbjct: 1041 KGFREGDQVKAKIVSIDTEKGKISFGIKASYF 1072


>gi|426201105|gb|EKV51028.1| hypothetical protein AGABI2DRAFT_196672 [Agaricus bisporus var.
           bisporus H97]
          Length = 1470

 Score =  223 bits (568), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 247/955 (25%), Positives = 417/955 (43%), Gaps = 107/955 (11%)

Query: 1   MAASSRK-SQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGG 59
           MAA  R  ++  SS+   K     K++ K  + + + A+  ++ A         FPRGGG
Sbjct: 1   MAAQKRPLNETTSSRKSKKLKTDEKSKPKEKEVEKSTALTLEEAA---------FPRGGG 51

Query: 60  HSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKL 119
            S T  E   I AE   E +       K +KK  +KT +K N +V + G    D +  + 
Sbjct: 52  TSFTPLEVKTIRAEAVKEADEALFKEEKGSKKNARKT-KKQNISVSEKG----DSVRIEH 106

Query: 120 PRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL---DN 173
             Y      K    GMK+ G V  +    L+I LP  L G   + + +     +L   DN
Sbjct: 107 LNY------KRAFVGMKILGQVVSIIPLGLIISLPNQLYGHVPITQISSQFTTVLERFDN 160

Query: 174 EIEANEDNL-------------LPTIFHVGQLVSCIVLQLD----DDKKEIGK------- 209
             E +++++             L  +FHVGQ V  IV  +      D   +GK       
Sbjct: 161 RDEGSDEDIAMEDEDEDTQTPDLYGMFHVGQYVRAIVTNVHAAGVSDIMGVGKLRDDLAK 220

Query: 210 --RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA 267
             R++ LSL    +  G+    ++ G  ++A VKS+EDHGY L  G+   +GFL   ++ 
Sbjct: 221 ASRRMELSLVPEKVNAGVQKTDLKSGFTISAAVKSLEDHGYNLDLGVQDVSGFLSFEDVG 280

Query: 268 ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVST 327
            +S   +  G ++   V  I    +V  ++ D +  +K +  ++   S++ ++PG +V  
Sbjct: 281 RDSP-KLHVGHVINVSVSKISANNRVCNVTMDCEKQAKSLLYEIS--SVNSVLPGTLVQC 337

Query: 328 RVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF---VDPTS 384
            + SI   G+ L  L +F GTVD FHL    P       +    KV ARIL+     P  
Sbjct: 338 LITSINPEGINLQVLGFFDGTVDQFHLPKNPPKP-----FKVGTKVKARILYNYSASPPK 392

Query: 385 RAVGLT-----LNPYLLHNRAPPSHVK----VGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
            ++ L+     L PY++      S ++    VG + D  KV RV++  GL++++      
Sbjct: 393 FSLALSEHVIRLRPYMVSMGEDSSLLEEAYPVGTVLDAVKVSRVEKERGLIVEVDG---Q 449

Query: 436 TPAYVTISDVAEEEVRKLEK--KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
              +V IS ++++ V  L     +K G+  R R+ G    +GL    LK S  E      
Sbjct: 450 LEGFVHISHLSDDHVPSLTSIGPWKPGTIHRARVTGHFTFDGLLQLSLKRSVLEQKYIQV 509

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +DV  G  V G +  +      V     +  +    H ++  +  P K+FKVG  +  RV
Sbjct: 510 TDVGVGQTVTGTIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRV 569

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V ++  RI++T KKTL+ S+L ILS+  +     + H  + K+      V FYN ++ 
Sbjct: 570 LVVDAEKNRISLTAKKTLLNSQLPILSNIEDVQPEDLAHAVVFKVHDKHLLVEFYNNLKA 629

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL--VK 668
             P  E+   P    S  + VG+VVK RI+S     RRI  S      T  +  D+  V+
Sbjct: 630 VIPLKEVSETPVNSLSEAFSVGKVVKVRIISVQQNQRRIVASIRRATATGSATPDISKVE 689

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMKSVIKPGYEFDQL 727
           +G++V GVV  +  +  +++ +     K     ++LA+H       +KS +K G    +L
Sbjct: 690 VGNIVEGVVAEIHKDNAILF-LQPSNVKALHSLKNLANHRAIGLPQLKSELKVGERLSEL 748

Query: 728 LVLDNESSN---LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           +V+         ++ +A  S +    ++     ++H   +V G V      G  V+    
Sbjct: 749 VVVTRNLEKGFVIVANAPKSKLTLPSKIALSIDNVHIGQIVSGRVIRHTRLGALVKVTSH 808

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    +   D     LS    V   V++ I+ V+ E  R+TLS +QS           
Sbjct: 809 IGGIIHPTDVSDNFDNGLSYP-AVDSLVKAAIVKVDEEKRRVTLSTRQS----------- 856

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                  ++   Q+++    E+  +   I+G+ + G V    D G+ V+   + D
Sbjct: 857 -------RLRPDQTTQVVDKEINDISDLILGASVRGFVKSIADHGLFVTVGRYID 904



 Score =  144 bits (362), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 157/595 (26%), Positives = 282/595 (47%), Gaps = 61/595 (10%)

Query: 967  DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
            D+GV QTV   ++ + ++ + ++L E    + + +       K P K+F  G S+   V+
Sbjct: 511  DVGVGQTVTGTIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRVL 570

Query: 1027 ALPS-----SSTAGRLLL--LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLEL 1079
             + +     S TA + LL   L  +S  E    +            L  A + ++    L
Sbjct: 571  VVDAEKNRISLTAKKTLLNSQLPILSNIEDVQPE-----------DLAHAVVFKVHDKHL 619

Query: 1080 RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1139
             ++F       I + EV++   N +   FS   +G+ V  RII+             +  
Sbjct: 620  LVEFYNNLKAVIPLKEVSETPVNSLSEAFS---VGKVVKVRIISVQQN---------QRR 667

Query: 1140 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS-RHLKAQLFILDSA- 1197
            I  S+   +  GS    +   V +G  V G V ++  + A+L +   ++KA   + + A 
Sbjct: 668  IVASIRRATATGSATP-DISKVEVGNIVEGVVAEIHKDNAILFLQPSNVKALHSLKNLAN 726

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
            +    L + +    +G+ ++  V+ + N EK  + +   P         + +S DN    
Sbjct: 727  HRAIGLPQLKSELKVGERLSELVVVTRNLEKGFVIVANAPKSKLTLPSKIALSIDN---- 782

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            +H G IV GR+  I     G +V++  H+ G +H T++ +    + LS       VK  +
Sbjct: 783  VHIGQIVSGRV--IRHTRLGALVKVTSHIGGIIHPTDVSD-NFDNGLSYPAVDSLVKAAI 839

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            +++    R         R +L    S    D +T V    K +  I DL     V+G+VK
Sbjct: 840  VKVDEEKR---------RVTLSTRQSRLRPDQTTQV--VDKEINDISDLILGASVRGFVK 888

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            ++   G F+ + R +DA+V +  L D +++  + +F + +LV GR+LSV+  +++VE+T 
Sbjct: 889  SIADHGLFVTVGRYIDARVQIRELFDDFIKDWKPKFQVNQLVKGRILSVDIENQKVELTF 948

Query: 1437 KTSD--SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
            ++ D  +R        + S+LH G+ V G IKR+E+YGLFI IE T + GLCH SELS++
Sbjct: 949  RSGDLSARQREGQTKRSPSDLHEGEKVDGIIKRIENYGLFIQIEGTKMSGLCHKSELSDN 1008

Query: 1495 HVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
               ++      +R G++VK  ++++D  K+RIS  +K S F    ++L  S+E+E
Sbjct: 1009 KDADVSVALQNFRQGDRVKAVVIEID--KKRISFSLKPSLFVE--EDLDGSAEDE 1059


>gi|330794746|ref|XP_003285438.1| hypothetical protein DICPUDRAFT_29294 [Dictyostelium purpureum]
 gi|325084613|gb|EGC38037.1| hypothetical protein DICPUDRAFT_29294 [Dictyostelium purpureum]
          Length = 812

 Score =  223 bits (568), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 160/575 (27%), Positives = 280/575 (48%), Gaps = 46/575 (8%)

Query: 119 LPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLAR---AADALDPILDNEI 175
           +P+ A ++  K+I  GM + G    V+E D+ I LP GL+G  +    +D+    +   +
Sbjct: 143 IPKSACRLFKKDIHKGMVVLGSFESVSEIDITISLPFGLKGYIKFNEISDSFTEWMKKTL 202

Query: 176 EANEDNLLPT--------------IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
           E  E+N+  T              +F+ GQ++   +    D     G   +  S+R  ++
Sbjct: 203 EREEENVKSTNFRKMKIISDQVRKMFYKGQIIKVAIAGFTDHHTIEG---LHCSMRPEVV 259

Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-------AENSGIDV 274
             G S+ET  E M +   V+SIED GYI+ FG   +TGF+  +N         +    D+
Sbjct: 260 NSGSSMETFTENMTIHGAVQSIEDKGYIVSFGSKDYTGFIEFSNTNYYYPGQTDEKQNDL 319

Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
             G  ++ ++ SID+  K   L+     VS+   KD   I++D +  GM+V T+V +++ 
Sbjct: 320 FVGQPIEALIDSIDKDTKTFKLTLSHSLVSRATVKDSSVITMDSIKAGMLVETKVIAVIG 379

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
            G+ L FL +F G V++ HL N  P  N+K++ N    V ARI+FVD  ++ +GL+  P+
Sbjct: 380 GGLHLGFLDFFAGDVELLHLNN--PLDNYKDNQN----VKARIIFVDQVNKRIGLSTLPH 433

Query: 395 LL-HNRAPPSHVKVGDIYD-QSKVVRVDRGLGLLLDIPSTPVST-----PAYVTISDVAE 447
           ++ +   P    K G I+D  S  V     L ++L  PST VS+       YV I ++  
Sbjct: 434 IMGYKPYPFGTFKKGQIFDFNSLTVERIEPLEMILACPSTVVSSKPQTIKGYVHIEELES 493

Query: 448 EEV--RKLEKKYKEGSCV--RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
             V   K   ++K+G     + RI    +L+G+ T   +    E   F+++D++ GM+  
Sbjct: 494 GVVNLNKASNQFKKGEAFNKKCRIKHLDYLDGMVTFTARTRELEKKFFSYNDIECGMITT 553

Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561
           G +  +      ++    +  + P  H+++  I      FK+G+ +  RV+ V    KR+
Sbjct: 554 GIIKYIREESVEIELAPSIHGVVPKTHLADVAITNTSTFFKLGSTVKVRVISVDPDKKRL 613

Query: 562 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
            +T KK+L++S+  I++        LI+HG ITK  ++  FV FYN   G      L L 
Sbjct: 614 QLTLKKSLIQSEYPIITDKNTTPAGLISHGIITKTTRYLVFVSFYNNSFGVVESQNLSLT 673

Query: 622 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
           P       + +G+ V  + +SS  +   ++L+ ++
Sbjct: 674 PIQSVQKQFPIGRTVLVKSLSSDNSKPGLSLTMII 708



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D+   MI  G +K +  +   I L+  +   V  ++L+D  + +    F +G  V  RV+
Sbjct: 545  DIECGMITTGIIKYIREESVEIELAPSIHGVVPKTHLADVAITNTSTFFKLGSTVKVRVI 604

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
            SV+P  KR+++TLK    ++  QSE   I + +    G I  G I +   Y +F++  N 
Sbjct: 605  SVDPDKKRLQLTLK----KSLIQSEYPIITDKNTTPAGLISHGIITKTTRYLVFVSFYN- 659

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
            N  G+     LS   + +++  +  G  V VK L  D  K  +SL M
Sbjct: 660  NSFGVVESQNLSLTPIQSVQKQFPIGRTVLVKSLSSDNSKPGLSLTM 706


>gi|443686492|gb|ELT89750.1| hypothetical protein CAPTEDRAFT_150563 [Capitella teleta]
          Length = 272

 Score =  222 bits (566), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/265 (46%), Positives = 181/265 (68%), Gaps = 3/265 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P++  EF+RL+  SP+SS VW+ YMA+ L  A+++KAR +AERAL TI+ REE EKLN+W
Sbjct: 7    PQSAAEFDRLLMQSPDSSMVWMAYMAYHLETAEIDKARGVAERALSTISFREEREKLNMW 66

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            VAY NLEN YG    E +  V +RAL Y D KKV+  L  +Y ++E+ + A+E+   ++K
Sbjct: 67   VAYLNLENLYGTT--EQLKAVIERALTYNDHKKVYQQLAKIYVKSEKIQAAEEVHNTLLK 124

Query: 1778 KFKHSCKVWLRR-VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
            K+K    VW+   +     QQ E  ++++QR+  SL +  H   I + A +EFK G  ++
Sbjct: 125  KYKAEADVWVDFGLFYYNTQQAESARSLLQRSFKSLDKKIHTDVILKFAQMEFKYGDVEK 184

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
            G++M EG+LS +PKRTDLW+IY+D  +++ D+D  R + +RAI L L  KKMKF+FKKYL
Sbjct: 185  GKTMMEGLLSSFPKRTDLWAIYVDLLVKMQDIDCARQILDRAIHLELNIKKMKFMFKKYL 244

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVES 1921
             +E+  G E+ ++ VK+KAME++ES
Sbjct: 245  SFEEKHGNEQTVKAVKEKAMEFIES 269


>gi|221486401|gb|EEE24662.1| programmed cell death protein, putative [Toxoplasma gondii GT1]
          Length = 497

 Score =  221 bits (563), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 116/274 (42%), Positives = 171/274 (62%), Gaps = 14/274 (5%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            PR+P++FERLV  + NS+ VWI YMA+ L + +++ AR IAERA+Q IN REE E+ ++W
Sbjct: 219  PRSPEDFERLVLVNGNSAAVWISYMAYYLKLNELQLARQIAERAVQHINYREEQERSSVW 278

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            +AY NLE  YG+     V  VF+RA+QY D KK+H  +  +YE+  Q   A ++  K  +
Sbjct: 279  IAYLNLECVYGD----RVDDVFRRAIQYNDSKKIHYQMTFIYEKARQLDKARQMCEKCCE 334

Query: 1778 KFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835
            KF  S K+W+R +  L          + ++ +AL  LPR KHI+F++  A LE+K+   +
Sbjct: 335  KFPESQKMWVRHLTLLYTALDAASAARDLMLQALFRLPRRKHIEFVATCARLEYKHASKE 394

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRL--------GDVDLIRGLFERAISLSLPPKK 1887
            RG++ FE +L+E+PKRTD+WS Y+D  I           ++  IR LFER  SL L  +K
Sbjct: 395  RGQTFFEKLLAEHPKRTDIWSQYVDAHIAAHTPPRCVPANLQSIRVLFERTTSLQLKLRK 454

Query: 1888 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            MKF F ++L++EK  G  E    V+ KA E+V+S
Sbjct: 455  MKFFFTRWLDFEKQHGTAETQARVRAKAREFVQS 488


>gi|71004318|ref|XP_756825.1| hypothetical protein UM00678.1 [Ustilago maydis 521]
 gi|46095627|gb|EAK80860.1| hypothetical protein UM00678.1 [Ustilago maydis 521]
          Length = 1563

 Score =  221 bits (562), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 116/279 (41%), Positives = 176/279 (63%), Gaps = 7/279 (2%)

Query: 1647 AAEERL---LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            A EE L   L   AP +  ++ERL+  SPNSSF+WI++M+F L ++DV++AR IA RAL+
Sbjct: 1268 ALEEDLTADLASKAPESATDYERLLLGSPNSSFLWIQFMSFALQLSDVDRAREIARRALK 1327

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
             IN REE E++N+W+A  NLEN YG+  +E +   F+ A+Q  D   ++L ++ ++E + 
Sbjct: 1328 VINYREEQERMNVWIALLNLENTYGS--DETLDSTFKEAVQANDGFSMYLKMINIFETSS 1385

Query: 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFIS 1822
            + + A EL  K   K+    + W+   +  L+  Q +  +A++ RA+ +L + +H   I+
Sbjct: 1386 KTEEAQELFVKAKAKYSVLPEFWIEYARFYLRTDQADAARALLPRAMQALDKREHTSTIT 1445

Query: 1823 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-IRGLFERAISL 1881
              AI EFK G A+RGR++FEG++  YPKR DLW  YLDQE RL D    +R LFER ++L
Sbjct: 1446 AFAINEFKLGDAERGRTIFEGLVDSYPKRLDLWWQYLDQESRLQDNQAQVRNLFERTMTL 1505

Query: 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
             L  KK K L KK+LEYEK  G+ +  + V  +A  +V+
Sbjct: 1506 KLTAKKGKSLLKKWLEYEKKNGDVKSQQKVLARAKAFVD 1544



 Score =  150 bits (378), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 186/747 (24%), Positives = 312/747 (41%), Gaps = 115/747 (15%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVE---------RGLHKKNKKKKKKTERKANETV 104
           FPRGG   LT  E  E   E  +E  A E         + L K+NK K+K    K N+T 
Sbjct: 49  FPRGGSSGLTPLEFREAKREARSESAANELLFKDAKDEQALAKRNKIKQKHNREKRNDTK 108

Query: 105 DDLGSLFGDGISGKLPRYANK----ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG- 159
                      + +  +  +     I  K +  G +L   V  ++   +V+ LP  + G 
Sbjct: 109 KKRTPAAASAPTMRAEKSEHHRIEHINYKRLVPGSRLLCSVLAIHPIAVVVSLPNQMLGH 168

Query: 160 -------------LARAADALDPILDNEIE------------ANEDNLLPT--------- 185
                        L  AADA     D + +              E N  P          
Sbjct: 169 IPATQISPQFTHRLQVAADASAEHDDQDEDMSTEEDSESDDDDAETNSAPNKRSKKDVTK 228

Query: 186 ------IFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSL 227
                 +FHVGQ +   V+Q+       G+            R++ LSL   L+  G+S+
Sbjct: 229 VPELSELFHVGQWLVASVVQVHSGDVAKGRPTREGGEYEKESRRVELSLSPHLVNTGVSI 288

Query: 228 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGF--------LPRNNLAENSGIDVKPGLL 279
             +  G  L+A + S+EDHGY+L  G+P F GF        LP +  A  +G  ++ G +
Sbjct: 289 SDLDVGASLSATISSVEDHGYMLDSGIPEFRGFVGFSDVARLPASFHAGKNGKSLEVGSV 348

Query: 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
           +   +  I  +++    + DP TVS    K     SI  ++PG +    V + L  G+ +
Sbjct: 349 VFAKITKIPESKRSFEATLDPKTVSTSPIKHTP--SITAILPGTLTKVLVTAALPTGLNV 406

Query: 340 SFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RA 386
                F  T+D FHL       +  + Y +  K  AR+L+  + P S           R 
Sbjct: 407 KLFGMFDATIDRFHLPELPQGKDISDVYKEGSKHVARVLWDLLSPPSTALQSDIPEHERK 466

Query: 387 VGLTLNPYLLHNRAPPSH--------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPA 438
           +GL+L P +L   AP +           +G I  +  VV+     GL++ +  T +    
Sbjct: 467 LGLSLAPQVLALEAPVAKDQQLLQHAYPIGAIL-KVTVVQTINDWGLVVSVHDTDLR--G 523

Query: 439 YVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 495
           +V IS V+++ V  L      + + +  + R++G    +      LKAS  E      S+
Sbjct: 524 FVHISQVSDDHVVSLPPSSGPFAKETVHKARVVGHSPTDRTLQLSLKASVLERKFMRVSE 583

Query: 496 VKPGMVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           V+ G VV   +I +    AI +Q  G V  +    H ++ ++ +P K++K G  +  RV+
Sbjct: 584 VEVGEVVTANIIKLGLPNAIFLQLQGHVDGVVFSNHFADVKLTQPEKRYKPGLSVKARVM 643

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V     RI +T KK+LVKS L I++S  +A   ++T+  + +++ +   V  + G++  
Sbjct: 644 DVDPNRNRIVLTLKKSLVKSDLPIVASMQDARIGVVTNATVFRVQTNSLIVSLFGGLKAL 703

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 666
            P  E+  +   +  S +  G+V+K RI         +  S +  L   +    V   D 
Sbjct: 704 VPGREVSENDFNDVKSSFTEGKVIKIRITEVDYENQKVVGSIKQTLPEYLAKLNV---DA 760

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKG 693
           V++G  V+G V  V    VV+ ++  G
Sbjct: 761 VEVGDKVTGKVAAVHKEVVVLTLVPTG 787



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 145/676 (21%), Positives = 268/676 (39%), Gaps = 61/676 (9%)

Query: 307  VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL-TYFTGTVDIF-----HLQNTFPT 360
            V KD + +     +  ++  T VQ+I + G+++S   T   G V I      H+ +  P+
Sbjct: 482  VAKDQQLLQHAYPIGAILKVTVVQTINDWGLVVSVHDTDLRGFVHISQVSDDHVVSLPPS 541

Query: 361  TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 420
            +        HK   AR++   PT R + L+L   +L  +              + ++++ 
Sbjct: 542  SGPFAKETVHK---ARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVGEVVTANIIKLG 598

Query: 421  RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
                + L +          V  +  A+ ++ + EK+YK G  V+ R++            
Sbjct: 599  LPNAIFLQLQG---HVDGVVFSNHFADVKLTQPEKRYKPGLSVKARVMDVDPNRNRIVLT 655

Query: 481  LKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 537
            LK S  +    +V +  D + G+V    V  V +   IV   GG+KAL P   +SE +  
Sbjct: 656  LKKSLVKSDLPIVASMQDARIGVVTNATVFRVQTNSLIVSLFGGLKALVPGREVSENDFN 715

Query: 538  KPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
                 F  G  +  R+  V  +++++  + K+TL +    +     E  D++   G +  
Sbjct: 716  DVKSSFTEGKVIKIRITEVDYENQKVVGSIKQTLPEYLAKLNVDAVEVGDKVT--GKVAA 773

Query: 596  IEKHGCFVRFY-NGVQGFAPRSELGLDPGCEPS----SMYHVGQVVKCRIMSSIPASRRI 650
            + K    +     GV+     S L             S+    ++    + +  PA   +
Sbjct: 774  VHKEVVVLTLVPTGVRALLSLSVLASMRNTTSQELLESLEEDQEIEDLVVSAKNPAKGIV 833

Query: 651  NLSFMMKPTRVSED--------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
             ++  ++ ++ SED          VK G++V G V +   +  +  V+A G +  T  T 
Sbjct: 834  IVADKVRSSK-SEDVENNGSTSGQVKQGNVVQGRV-IQKNDKYLDCVVALGTA--TRATL 889

Query: 703  HLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLP------SD 755
            H+ D  +  +   S+  PG      +V L +   + ++S + S + ++          S 
Sbjct: 890  HVTDLADDFSRNVSLPSPGQTLQCYIVSLKSNGKSAVISTRPSRVAASDSAEVTDPEISS 949

Query: 756  ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSN 815
             S +     V G+V  I   G FV    +L       +  D    D    + VGQ V   
Sbjct: 950  ISDLAKGQKVRGFVKAITNVGLFVTVGRKLDARVQVRELFDEFVRDWKTRFTVGQVVSGT 1009

Query: 816  ILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG 875
            I+D N     I +SLK     ST  S        EE+ A+L + K      K +  F +G
Sbjct: 1010 IMDTNVHNNEIEMSLK-----STPGSIKPRAERAEER-ALLDAKKRP----KRLADFKVG 1059

Query: 876  SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVA 928
              ++G V     FGV V   E ++V G    ++L+    +        G  ++A +L + 
Sbjct: 1060 DKVKGFVKNIIGFGVFVQI-EGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRIN 1118

Query: 929  KAERLVDLSLKTVFID 944
            + ++ +   LK  + D
Sbjct: 1119 EEKKKISFGLKPSYFD 1134



 Score = 47.8 bits (112), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 749  AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYY 807
            A++ P   +       V G+V NII  G FV+  G  ++G A  ++  DG+  +  K + 
Sbjct: 1046 AKKRPKRLADFKVGDKVKGFVKNIIGFGVFVQIEGTNVSGLAHMNELSDGKADEALKAFR 1105

Query: 808  VGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            VG  VR+ +L +N E  +I+  LK S   + D
Sbjct: 1106 VGDKVRAIVLRINEEKKKISFGLKPSYFDAAD 1137


>gi|443696428|gb|ELT97129.1| hypothetical protein CAPTEDRAFT_227890 [Capitella teleta]
          Length = 1324

 Score =  220 bits (561), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 290/1227 (23%), Positives = 520/1227 (42%), Gaps = 166/1227 (13%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKK--------------NKKKKKKTERK 99
            FPRGG   L +    +   +    F+A +   HK+              +  KKKKT  +
Sbjct: 9    FPRGGKEKLDEATLKQTRKKGKDLFQATDDDEHKRKKKAAKRKASKDKTDPAKKKKTAER 68

Query: 100  ANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG 159
                  + G             +   +T K++  G  + G +  V + +L +  P  L G
Sbjct: 69   VEYWAPNAG-------------FVKVLTHKDLVEGSLVMGCIKNVLDYELKVQFPNNLSG 115

Query: 160  LARA---ADALDPILDNEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEI--GK 209
            +        A   +L+   + +   +     L  +FH GQ V C+V    + ++ I  G+
Sbjct: 116  IVPITGLCSAYQELLELAAKGDTSRMEELVTLQDLFHPGQFVVCLV----ERERSILEGE 171

Query: 210  RKIW---LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL 266
             KI    L+L    + + +S   ++ GM L  +V S EDHGY++  G+     FLP+ + 
Sbjct: 172  SKITPAKLTLDPRQVNREISSTGLKSGMTLHGFVSSCEDHGYLIDIGVAKVKAFLPKADA 231

Query: 267  AENSGIDVKPGLLLQGVVRSIDRTR------KVVYLSSDPDTVSKCVTKDLKGISIDLLV 320
              +    +  G  L  +V +++         ++V +  DP   SK   +    I++  L+
Sbjct: 232  NRHFKDGLHIGSYLHCLVTNVNAEAMTSGDVRMVTIDIDPKKTSKSSIRADMEINLRTLL 291

Query: 321  PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
            PGM ++  VQ + +NGV++ FL  F G+V   HL N        +DY++ ++  AR+L++
Sbjct: 292  PGMSMNVSVQKVADNGVVVKFLE-FQGSVHEKHLMNKL------SDYSEKQEFRARVLYL 344

Query: 381  DPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
             P ++ V LT   + +   A       S +KVG     + V ++++         S   +
Sbjct: 345  QPVTKVVVLTQLKHFVEVDALAASQLFSQMKVGTDIADAAVTKLNKWGAYF----SFGEN 400

Query: 436  TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD 495
               +   + + +E    +E K+  GS    R++GF +++ +     K S  +   F   +
Sbjct: 401  VQGFARKALLTDENKTPVESKFTVGSKHLCRVIGFNYVDNMVLLTAKESDVKRPYFHLEN 460

Query: 496  VKPGMVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            + PG  V   V    S   + VQ   G++      H ++       KKF +G+ +  R+L
Sbjct: 461  LNPGDKVDAVVTKHLSKDTVQVQVGVGLRGFIHRLHNADVPTSHIDKKFPIGSSIKCRIL 520

Query: 555  GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
             V  + K + +T K   +K  L +++S+ ++T   I  G I  I+  GC V F+NGV+GF
Sbjct: 521  SVDYEKKALNLTCKGRQLKPSLPLITSFEQSTRGTIAEGCIVDIQSKGCLVVFFNGVKGF 580

Query: 613  APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---------------- 656
            AP   L LD     + ++ +GQ++KCR+         + +SF +                
Sbjct: 581  APAGHLNLDEDTLVTDVFFLGQMIKCRVFRPKDDINGMLVSFKLDGDDENNQKKTASNKK 640

Query: 657  ---KPTRVSEDDLVKLGSLVSG----VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
               K T   E  +V+      G     VDV +P A +           ++  EHL DH+ 
Sbjct: 641  EQKKRTGKVECKIVECRVKTVGEESLEVDVASPKATL-----------SLCHEHLTDHV- 688

Query: 710  HATVMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVH 766
              ++ + +++  +  DQ+ VL   +   L +SAK SLI+S ++   P     I   ++++
Sbjct: 689  --SLGRPLLRSYHAGDQIKVLMWKDDYGLHISAKPSLIHSLEKPSYPKTYQDIEDGNILN 746

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV----RSNILDVNSE 822
            G+V  + +    V+    LT    +  A D   + L     +GQ++    R ++L    +
Sbjct: 747  GFVQALQDDRILVKLFNGLTVGVHKKFASDEPVSSLPDLLTLGQTLSVCFRGDVL----K 802

Query: 823  TGRITLSLKQSCCSSTD---ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
             G++  SL+ S     +      + E FL + +  M    K   +  K +  + IG V+ 
Sbjct: 803  NGQLARSLRFSHLYKEERPTGDDILESFLSDYQRVMSAMKKSKDAVEKKLAKYHIGQVVT 862

Query: 880  GKVHESNDFGVVVSFEEHSDVYGFIT------HHQLAGATVESGSVIQAAILDVAKAERL 933
              +  S D GV    E+   V GF T      H          G  +QA +L V    + 
Sbjct: 863  VTIEASRDIGVTCVTED--GVKGFATLQSINEHDDDEDRKFTVGESVQAVVLYVDPLTKC 920

Query: 934  VDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY 993
            ++LSLK           S   A   K   ++ K L  +Q + A V ++KE+++++ L E 
Sbjct: 921  LELSLK----------KSTYHAVSSKNAEKSLKVLP-NQVIRAEVLLIKEDFVLVLLHE- 968

Query: 994  NHSIGYASV--SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSS 1051
             H++G  +   +  N   F +K   N  ++     A+  S T   +L  L+   E    +
Sbjct: 969  -HALGRMAFLPAMRNFNDFLEK---NLYTIGQVNQAVIKSVTPNGILANLQLHQEKRLQT 1024

Query: 1052 SKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND--DKSNVVENLFS 1109
            +      S   +G   +A +T  K  ++ +K G    GRIH+T + D  D   ++ N FS
Sbjct: 1025 A-----PSLITLGKKCKAIVTGFKAQQVNVKVG-KHEGRIHVTNIADSVDDGTLLRNRFS 1078

Query: 1110 NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1169
                 Q V  R I     P   K    E + K S+L+  +  + ++      S+  R+ G
Sbjct: 1079 E---KQVVEVREITNQKSPVGMK----EYTTKESLLSTDDTSASVVH-----SVNDRIVG 1126

Query: 1170 YVYKVDNEWALLTISRHLKAQLFILDS 1196
            +V KV      + I  + K ++ +  S
Sbjct: 1127 FVNKVSKNGLQVFIDANTKTRVSLAHS 1153


>gi|328784871|ref|XP_394740.4| PREDICTED: protein RRP5 homolog isoform 1 [Apis mellifera]
          Length = 402

 Score =  220 bits (560), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 108/264 (40%), Positives = 177/264 (67%), Gaps = 3/264 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P + D+F+RLV + PNSS +W++YMA+ L   ++EKAR++A RA++TIN REE+EKLN+W
Sbjct: 134  PNSVDQFDRLVLARPNSSIIWLQYMAYYLQTTEIEKARAVARRAVKTINFREESEKLNVW 193

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
             A+ NLE+++G    E++  VFQ A++  D  K++  +L ++    +    ++ +  +I 
Sbjct: 194  NAWLNLESKFGTS--ESLNDVFQEAVRSNDSLKIYSHMLIVHVEAGRQIELEKTINTIIG 251

Query: 1778 KFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
            KFK   ++W+   + LLK   ++  + ++QRAL SLP  +H+  + + AI+E K G  +R
Sbjct: 252  KFKQIPEIWINCGEALLKIGLKDKSRHIMQRALQSLPASEHVNLMVRFAIMENKFGDKER 311

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
             +++FE ILS YPKR D+WS Y+D  I+  D+D+ R + ER +  +LPP+KMK LFKK++
Sbjct: 312  SQTLFEQILSSYPKRVDIWSCYVDSLIKSNDIDIARRVLERTVIQTLPPRKMKILFKKFI 371

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVE 1920
             +E+  G +E + +V+Q A EYVE
Sbjct: 372  NFEEQYGTQESVNHVQQMAAEYVE 395


>gi|242004044|ref|XP_002422951.1| programmed cell death protein, putative [Pediculus humanus corporis]
 gi|212505867|gb|EEB10213.1| programmed cell death protein, putative [Pediculus humanus corporis]
          Length = 1410

 Score =  219 bits (558), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/282 (41%), Positives = 178/282 (63%), Gaps = 15/282 (5%)

Query: 1642 EQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1700
            EQ +R  EE+L++ D  P T D+F+R V ++P+SS  W+KYMAF +   ++E AR++A R
Sbjct: 1134 EQRLRYIEEKLMDPDREPETIDDFDRSVLANPDSSATWLKYMAFHIQNTEIEAARTVARR 1193

Query: 1701 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1760
            AL+ I+ R+E EKLNIW+A  NLEN YG   E+++ K+   ALQY DP K+HL +L LY 
Sbjct: 1194 ALKAISFRKEQEKLNIWIALLNLENLYG--CEQSLNKILTEALQYNDPYKIHLHMLNLYG 1251

Query: 1761 RTEQNKLADELLYKMIKKFKHSCKVWLR-RVQRLLKQQQEGVQAVVQRALLSLPRHKHIK 1819
            +T   +  ++L   M+KK+K    +W    +      + E  + V+QRAL  L + +HI 
Sbjct: 1252 QTNNYQEMEKLGNFMLKKYKDVENLWYDVGLAYFTVGKIESARFVLQRALTILNKKQHIL 1311

Query: 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879
             +S+ A LE K G  +R ++++E IL  +PKR D+WS Y+D ++            ERA 
Sbjct: 1312 LLSKFAHLENKYGSPERAQTLYESILGSFPKRVDIWSCYVDIQV-----------LERAT 1360

Query: 1880 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            S SL P+KMK LFKK+L +E++ G  E +E V++ A+EYVE+
Sbjct: 1361 SQSLRPRKMKTLFKKFLTFEENHGTPENVEKVREAAVEYVET 1402



 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 139/632 (21%), Positives = 276/632 (43%), Gaps = 39/632 (6%)

Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEA 177
           +Y  ++    +  GM L G+V++V++K + + LPG LRG   +   ++    ++ N    
Sbjct: 52  KYVEELNASLVQEGMILLGIVSDVSDKIVNVSLPGSLRGVITIPNVSEFYTSLIQNMSSQ 111

Query: 178 NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
           +E   L  IF  G ++   +L + ++ K +      ++    ++   LS + + + ++LT
Sbjct: 112 SEVLGLTEIFQPGDILPVKILSVSEESKSL-----MVTSDPKMINSNLSYDAIDKDLILT 166

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT--RKVVY 295
             VKS EDHG+I+ FG+    GFL  + + E+   ++K G +++  V S  ++     V 
Sbjct: 167 GNVKSKEDHGFIIDFGIDKVLGFLKFDKVKEDG--ELKVGQIIRSSVISCLKSPGSCSVQ 224

Query: 296 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIF--H 353
           LS+      K   K    +S+  LVPG      V  +L NGV + +         I+  +
Sbjct: 225 LSTLKTDFEKAYIKLNSSVSLSFLVPGFQFQVVVTKVLLNGVEVKYGNDVNKKGFIYEDN 284

Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQ 413
           L   FP     N   ++    A +L+V P    +   + P     +      K GDI   
Sbjct: 285 LPMKFPNLEKVNVGTEYI---ATLLYVKPLVNVLYFKVLP----KKKIEWPFKFGDIV-S 336

Query: 414 SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE-----EEVRKLEKKYKEGSCV-RVRI 467
            KVV+  R  GL++ I         ++ IS +       E  + +E  Y     + ++R+
Sbjct: 337 GKVVKARRS-GLVVKIVKGINVARCFIPISKLKNNKKILENDKSIETLYPVNKKIPQIRL 395

Query: 468 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
               +++    G    ++ +   F+ +D+K G ++  K+++   +   ++    +     
Sbjct: 396 GSRNYMKRQYLGATDKASLQEKYFSVTDLKCGEIISAKILSFSKYSVKLKIGQSILGTVA 455

Query: 528 LPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL 587
              +++  +  P  +FKVG ++    +  +SK + +T K +L+K K  ++    E     
Sbjct: 456 FNDLTDVPLKNPSLRFKVGQQVT--EINPESKFVRLTMKPSLIKEKNILMDLNFEKNHFY 513

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G I+++      V+F+NGV G  P+       G    + +  G ++KC  ++    +
Sbjct: 514 L--GVISRVLHGKLIVKFFNGVIGILPKRFTNHLDGGSLKTYFAEGHLIKCCPINVTSEN 571

Query: 648 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV--VYVIAKGYSKGTIPTEHLA 705
           + +    +   +     DL+K+G   +  V   T N  +  V V  K   +G +P + L+
Sbjct: 572 KLL----LSLLSSTEGSDLLKVGKKYNVTVVNKTENGFLLDVQVNKKKTCQGYLPKQLLS 627

Query: 706 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
            H    T + S   P  +F    V  +E++ L
Sbjct: 628 VHQNLTTPLLSTYFPNEKFSAYCVFASETNGL 659


>gi|315046956|ref|XP_003172853.1| rRNA biogenesis protein RRP5 [Arthroderma gypseum CBS 118893]
 gi|311343239|gb|EFR02442.1| rRNA biogenesis protein RRP5 [Arthroderma gypseum CBS 118893]
          Length = 1821

 Score =  219 bits (558), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 341/1441 (23%), Positives = 599/1441 (41%), Gaps = 171/1441 (11%)

Query: 28   KNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGL 85
            K SKK  +   +A  +++  D+  P FPRGG + LT  ER +I   A  D  FE      
Sbjct: 54   KASKKDTSAVSKAAPISMLRDEQ-PAFPRGGNNVLTPLERKQIQIQATKDVLFE------ 106

Query: 86   HKKNKKKKKKTERKANETVDDLGSLFGD--------------GISGKLPRYANK------ 125
                +K K   E   N+    LG    D              G   K      K      
Sbjct: 107  ----QKGKNGAEFANNDDEGSLGEEAEDKEGARAKPKKRKAKGTKTKEAPAVTKQGVKVE 162

Query: 126  -ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEA------- 177
             +T K I+ G ++ G V+ +   D+ + LP  L G     +A+   L  ++EA       
Sbjct: 163  SLTYKRIAVGSRILGQVSSIGLHDISLALPNNLTGFV-PLNAISKSLTRKVEAMLGDDKS 221

Query: 178  ------NEDNLLPTIFHVGQLVSCIVLQL---DDDKKEIGKRKIWLSLRLSLLYKGLSLE 228
                  ++D  L     +GQ +   V      +DDKK   K+ I LS+       GL+  
Sbjct: 222  EDEEDEDDDFELKDYVKIGQYLRASVTATTRNEDDKKVKNKKHIELSIEPHAANSGLTKA 281

Query: 229  TVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID---VKPGLLLQGV 283
             +     + A V S+EDHG I+  GL      GF+    L   +G+D   VK G +   +
Sbjct: 282  DMVVNATVQASVISVEDHGLIMDLGLEENEAKGFISSRELP--AGVDISTVKEGSVFLCI 339

Query: 284  VRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSF 341
            V   + +  VV LS+D  +              +I+  +PG      +  +   G++   
Sbjct: 340  VTGHNASGTVVKLSADLASAGSVKKAHFLNTAPTINAFLPGTAAEILITEVTPRGMIGKI 399

Query: 342  LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP 401
            +      +DI H   +    +    Y+   K+  R++   P+S  V L  +      +  
Sbjct: 400  MGMLDAVIDIIHSGASDGKKDLTTKYHAGAKIKGRLITTYPSSDPVKLGFSILDSVLKFS 459

Query: 402  PSHV----------KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
            P+             + DI  + KV  VD  LGL + + ST      +V +S +A+  V 
Sbjct: 460  PTATLASGDDNDMPSISDIIPEVKVTYVDSSLGLYVQLGST--KHQGFVHLSRLADGRVD 517

Query: 452  KL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV-- 506
             +   E +YK GS    RI+GF  ++ L +  L+    E       DV  G VVKGK+  
Sbjct: 518  SISSDEGRYKVGSTHEGRIIGFSAMDNLFSVSLEPKIIEQPFLRLEDVTVGSVVKGKIEK 577

Query: 507  --IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--I 561
              +  +   G IV     +  L P  HM++ ++  P KKF+ G ++  RVL V  +R  +
Sbjct: 578  LLVKPEGIEGLIVSLTDNISGLVPGMHMADTKLQHPEKKFREGLKVSVRVLSVDLQRRQL 637

Query: 562  TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
             +T KK+L+ S  A   +Y   +    + G + KI+ +G  V+FY  V+GF P SE+   
Sbjct: 638  RLTLKKSLLNSDSAPWKNYESVSAGNRSPGTLIKIQNNGAIVQFYGSVKGFLPVSEMSEA 697

Query: 622  PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVSGV 676
               +PS  + VGQVV    ++    S R+ +S    P+  + D     + +  G +VSG 
Sbjct: 698  YIKDPSQHFTVGQVVNVHALTVDAESERLVVS-CKDPSTATADYQSAFEKIHPGLVVSGT 756

Query: 677  VDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESS 735
            V   + + +++ +   G     + ++H++D      T   + I+ G + + LLV   + S
Sbjct: 757  VFEKSSDDLLIKLQDSGLI-ARLNSDHISDGSAAKRTSALNRIRVGQKMEGLLVYRVKKS 815

Query: 736  NLLL--SAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
            + L+  + K +L  +  +  LP+    I     V G + NII  G FV FL  LTG  P+
Sbjct: 816  HRLIQVTNKATLKEAVAEGRLPAKFEDIKHGLKVTGLIKNIIPEGIFVEFLDNLTGLIPK 875

Query: 792  SKAVDGQRADLSK-TYYVGQSVRSNILDVNSETGRITLSLK--QSCCSSTDASFMQEHFL 848
             + VD  RA      Y   Q + + +  V  ++ R  LSLK       S+D S       
Sbjct: 876  -RLVDDDRASRPDFGYSRFQVISATVCAVQEDSDRFLLSLKPVAKLKQSSDVSSAP---- 930

Query: 849  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND--FGVV--------VSFEEHS 898
             E+K +    +     +LK +E  ++G + + K+    D    VV        +   E  
Sbjct: 931  -EKKASATALTNPVDGDLKTMEDIVVGRITKAKITSVKDTQLNVVLADNVQGRIDISEVF 989

Query: 899  DVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVDLSLKTVFIDRFREANSNRQAQ 956
            D +  I   +    +  S  ++   +L +  A+  + + +S ++  +  +  +      Q
Sbjct: 990  DSWEDIKDRKHPLKSCHSKEILPVRVLGIHDARNHKFLPISHRSGKVPVYELSTKPSCLQ 1049

Query: 957  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYNHSIGYASVS-DYNTQKFPQKQ 1014
              + K    + L V  T    V  + E+ L L+L P     +    +S D + +   QK 
Sbjct: 1050 ASEFKPLHLEHLKVGDTHVGYVNNIAEDCLWLNLSPNVRGRLRITDISDDISIRGNIQKN 1109

Query: 1015 FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEI 1074
            F  G ++   V  + +     RL L  +     +T +     K      G ++   +T++
Sbjct: 1110 FPVGSAIQVVVTGVDAEKN--RLDLSARIGESAKTLTVADLSK------GMILVGRVTKV 1161

Query: 1075 KPLELRLKFGIGFHGRIHITEVNDD--KSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK 1132
               ++ ++      G + + ++ DD  K+N      +NF   + +   ++   + P+ K 
Sbjct: 1162 TDRQVLVQINDNVVGAVSLIDMADDYTKANP-----TNFHKNEALRVCVV-DVDIPNKKI 1215

Query: 1133 SFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQ 1190
            SF    S++PS +  S   +    +     + +GQ V G++ +VDN    +T+  ++ A 
Sbjct: 1216 SF----SVRPSKVLSSSLPVADPEITSINQLKVGQIVRGFIRRVDNIGIFVTLGHNVTA- 1270

Query: 1191 LFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR----------PFQDG 1240
             +I  S    S L+E++  F + + + G +  ++K+   +++ L+          PF   
Sbjct: 1271 -YIRVSDLSDSFLKEWKDEFQVDQLIQGRLTVVDKDNNKIQMTLKKSALDPNYKPPF--A 1327

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
            + D  V             G IV G++ K+      + +    +L G  H +E+    V 
Sbjct: 1328 LKDLKV-------------GQIVTGKVRKVEEYGAFIAIDGSANLSGLCHRSEMAEKRVE 1374

Query: 1301 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL--DGMSSTNSSDLSTDVDTPGKH 1358
            D    Y++   VK KVL++    +G   + L L++S   D      S D S+D ++ G  
Sbjct: 1375 DATQLYEKDDIVKAKVLKVDLE-KG--QIALGLKASYFKDLPEEQQSEDNSSDDESGGIE 1431

Query: 1359 L 1359
            L
Sbjct: 1432 L 1432



 Score =  205 bits (521), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/293 (38%), Positives = 179/293 (61%), Gaps = 26/293 (8%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L+ + P++  ++ERL+   P+SS +W+KYMAF L + +V+KAR IAERAL+T++I ++ E
Sbjct: 1526 LDANGPQSVADYERLLLGEPDSSLLWLKYMAFQLELGEVDKAREIAERALRTMSIGQDTE 1585

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLN+WVA  NLEN +GN  ++ + +VF+ A +Y D  +++  +  ++ ++ + + ADEL 
Sbjct: 1586 KLNVWVARLNLENTFGN--DDTLDEVFKGACEYNDAHEIYDRMASIFIQSGKTEKADELF 1643

Query: 1773 YKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA---VVQRALLSLPRHKHIKFISQTAILEF 1829
               +KK   S   +       L    E  Q    ++ RAL SLP H H++  S+   LEF
Sbjct: 1644 QAALKKKVSSTPDFFLNYANFLFDTMEAPQRGRDLLPRALQSLPPHTHVEVTSRFGQLEF 1703

Query: 1830 K--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS----- 1882
            +  NG  +RGR++FEG+LS +PKR DLW++ LD EI+LGD + +R LFER + +      
Sbjct: 1704 RSPNGDVERGRTVFEGLLSSFPKRIDLWNVLLDLEIKLGDEEQVRRLFERVLGIGHGVVT 1763

Query: 1883 -----------LPPKKMKFLFKKYLEYEKSV---GEEERIEYVKQKAMEYVES 1921
                       L  K+ KFLFKK+L +E+ +   G+ + ++ VK +A +YV S
Sbjct: 1764 ADGTKGGPKKKLKEKQAKFLFKKWLAFEEKIAPEGDTKMVDEVKARAADYVRS 1816


>gi|294941146|ref|XP_002783028.1| programmed cell death protein, putative [Perkinsus marinus ATCC
            50983]
 gi|239895225|gb|EER14824.1| programmed cell death protein, putative [Perkinsus marinus ATCC
            50983]
          Length = 1786

 Score =  219 bits (557), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/285 (39%), Positives = 174/285 (61%), Gaps = 20/285 (7%)

Query: 1655 KDAPRTPDEFERLVRSS---------PNSSFVWIKYMAFMLSMADVEKARSIAERAL-QT 1704
            K  PR PD+FERLV  S         P++S VWI+YM + + +A++++AR  AER + Q 
Sbjct: 1484 KRNPRGPDDFERLVLMSCSASSTPDMPSASEVWIQYMGYWMQLAEIQRARECAERGIKQR 1543

Query: 1705 INIREENEKLNIWVAYFNLENEY---GNPPEEAVVKV---FQRALQYCDPKKVHLALLGL 1758
            +  R+E ++LN+W+AY NLE      G   ++A+ +V   F+RA  Y D KKVH+A+  +
Sbjct: 1544 LGFRDEQDRLNLWIAYLNLEAHICVEGGRKKDALKRVEDLFKRAASYNDSKKVHMAMCDV 1603

Query: 1759 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRHK 1816
            + R     LA E   +  +KF HS KVW++ ++ L    +  E  Q  + RAL    R K
Sbjct: 1604 WARAGAEDLALEAYKRTAEKFGHSKKVWMKYLEFLYSTGKLSEARQNCLPRALRLTDRRK 1663

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG--DVDLIRGL 1874
            H    ++ A LE+K G  +RG+++FE +L+  PKR D+WS+YLD+ I     D D +R +
Sbjct: 1664 HSLIATRAAKLEYKYGTVERGKTIFESLLASQPKRLDIWSVYLDEHINANKEDADQVRSV 1723

Query: 1875 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
            F+RA++L L P KMKF FK+++ +E+S G+ + ++ VK KA EYV
Sbjct: 1724 FDRAVTLKLKPAKMKFFFKRWVNFEQSYGDVDHLDLVKDKAREYV 1768



 Score =  110 bits (275), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 209/859 (24%), Positives = 354/859 (41%), Gaps = 125/859 (14%)

Query: 122 YANKITLKNISAGMKLWGVVAEVNEKDLVICLP----GGLRGLARAADALDPILDNEIEA 177
           + + IT K++  G ++   + +++   L++ LP    G ++G++   D  D I  +  + 
Sbjct: 41  HVSSITYKDLKVGTQVMAAIQDISPDALILDLPFNKMGIVKGISNMVDE-DDISKHMKQG 99

Query: 178 N---EDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGM 234
           N   +       F  GQLV+  V+  D   +E     I LSL  S+L  GL+ +T++  M
Sbjct: 100 NVALKSFKAQHRFRRGQLVTAAVIANDGSGRE---GSIQLSLLPSVLNAGLTSKTMKPHM 156

Query: 235 VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNL-AENSGIDVKPGL--LLQGVVRSID--- 288
            L A V + E HGY+L FG+   TGFL ++ L A    ++   G+  LL+   R  D   
Sbjct: 157 WLPATVLTEEAHGYVLSFGIDGVTGFLKKSELPAPTDKVETTKGVNPLLEMSARDNDAPE 216

Query: 289 ----RTRKVVY---LSSDPD--TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVML 339
               R   +VY   L +DP   T  +C  K       D +        +  S    G+ +
Sbjct: 217 AEQMRLGTLVYVRVLDNDPSNKTSLQCSAKAGNVEESDRI----GAPKKKASKKSAGIQV 272

Query: 340 SFLTYFTGTVDIFHL-------QNTFPTTNWKNDYNQHKKVNARILFV--DPTS--RAVG 388
            F+    G V   HL        +   TTN K      + V AR+L V  DP+S  RAV 
Sbjct: 273 DFMGPLKGVVHQHHLLHPILNDTDVTMTTNLK----VGQSVTARVLAVLADPSSHTRAVY 328

Query: 389 LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEE 448
           LTL P L+  +   S V+ G   + ++V+ V             P     +V   ++   
Sbjct: 329 LTLLPNLIQWKGIKSQVEAGTTIEAARVIDV------------IPKDCTRFVAGGNLMVA 376

Query: 449 EVRKLEKKYKE----GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
              +    Y++    G    VR LG   LE       +       V     V  GMV   
Sbjct: 377 HATRCSLPYRQPGAVGKKTDVRALGSNLLEMSVQVSAEEKVLAASVVNLQQVSAGMVFDK 436

Query: 505 KVIA--VDSFGAIVQFPGGVKALCPLPHMSEFEIVK--PGKKFKVGAELVFRVLGVKSKR 560
            VI    +  G IV     V    P    ++    +  P +  +  AE+  RVL V   R
Sbjct: 437 AVIEHFDNEKGLIVSLSDFVTGRVPKEQCTDQGNQRKLPKRYAEEKAEIRVRVLNVDPVR 496

Query: 561 --ITVTHKKTLVK------SKLAILSSYAEATDRLITHGWITKIEKH-GCFVRFYNGVQG 611
             +T+T KK+LV        +  I ++ A   D ++  G+++KI  H GC V+F+    G
Sbjct: 497 RQVTLTAKKSLVGRPDEEVPRALIRNADASVGDVVV--GYVSKILDHGGCIVKFFGEAFG 554

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMS--SIPASRRINLSFMMKPTRVSEDDLVKL 669
             P     +  GC      H G +VK R++S    P   R+ L  +      +  ++ K+
Sbjct: 555 LLPI----VTEGCA-----HEGALVKVRVVSKNDSPKGTRLRLQQVNSMEDSTMGEITKV 605

Query: 670 GSLVS----GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMKSVIKP---- 720
           G +++       D  +     V +   G +   +P   LAD  + A  VM+ V K     
Sbjct: 606 GDVLTVETIEGADKCSGGRQCVKIRCVGGTDVLVPVMQLADDPDMAVAVMERVEKKEDLQ 665

Query: 721 GYEFDQLLV--LDNESS-------NLLLSAKYS--LINSAQQLPSDASHIHPNSVVHGYV 769
            +   ++LV  + N+ +        L+   KY   L  S +++P   S +     + G+V
Sbjct: 666 HFPLAKVLVTAVMNDGTVEGTCKPVLVEDEKYRELLGISQEEIP---SKVKVGEGLVGFV 722

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DVNSETGRITL 828
            N+   G FVR +G +TG  P+ K  +G   ++S+   VGQ+V + ++  V++E     +
Sbjct: 723 SNVTTFGAFVR-VGGVTGLVPKPKLAEGFVEEVSEAVEVGQTVTTAVVSSVDAERNMFKM 781

Query: 829 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII---GSVIEGKVHES 885
            ++    ++      +E      K+ +           KW+    I   G V++ KV + 
Sbjct: 782 DMQPRAVAAVSELSAREELRAAAKLRL----------EKWLGSGRIPQRGQVVDAKVGKK 831

Query: 886 NDFGVVVSFEEHSDVYGFI 904
             +G ++   +     G +
Sbjct: 832 KPYGWMLELTKFEAAAGLL 850


>gi|440466088|gb|ELQ35374.1| rRNA biogenesis protein RRP5 [Magnaporthe oryzae Y34]
 gi|440482704|gb|ELQ63171.1| rRNA biogenesis protein RRP5 [Magnaporthe oryzae P131]
          Length = 1808

 Score =  219 bits (557), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 331/1410 (23%), Positives = 590/1410 (41%), Gaps = 172/1410 (12%)

Query: 17   PKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEI--HAEV 74
            P+ + ASK++ K  K     +  A  +     +D P+FPRGGG  LT  E  +I   A  
Sbjct: 28   PRSDSASKSKDKADKPA---SAPAAPVVSKLKEDEPLFPRGGGSVLTPLEHKQIKVQASK 84

Query: 75   DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKIT------- 127
            D  FE  E G   K K+ +   + K  ++   L  L  +  S K+     K++       
Sbjct: 85   DVLFEQ-ESG-KSKGKEDRAPKKLKGKKSKTQLKELAKNADSVKIESLNFKVSERPQCAL 142

Query: 128  ----------------LKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL 171
                            ++ +  G  + G ++ ++  ++ I LP  + G  +A  ++   L
Sbjct: 143  VADLPFVGEHTDAATIIQRLVKGSLVLGQISAISALEVEISLPNNVTGHVKAT-SISTQL 201

Query: 172  DNEIE-----------ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIG---KRKIWLSLR 217
              +++            + +  L +I  VGQ V   V+   ++    G   KR+I LSL+
Sbjct: 202  TKKLQDAMEVDQEEEDDDSEIDLTSILSVGQYVRAYVVSTMEEPSTAGAKGKRRIELSLQ 261

Query: 218  LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGIDVKP 276
              L   GLS   V E   +   + S+EDHGY++  G+ + TGFL +  + +  S   ++P
Sbjct: 262  PELANTGLSSADVVENSTVAGSISSVEDHGYVVDLGIQNLTGFLSKKEVDKGISAAQLEP 321

Query: 277  G----LLLQGVVRSIDR----TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328
            G    LL+ GV   I +    T+K+  +   P T            +I+  +PG  V   
Sbjct: 322  GCVHLLLVTGVKGKIAQVSTLTKKLSNVQLFPGTAK----------TINTFLPGTAVDVL 371

Query: 329  VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--A 386
            V  I   G+    +     T DI H        N +  Y    KV AR++   PTS    
Sbjct: 372  VSDISGRGLAGKVMGSLDVTADIIHSGLGPNGVNLEKKYKIGSKVKARVICNFPTSDNLK 431

Query: 387  VGLTLNPYL--LHNR--------APP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
            +G++L  +L  L  R         PP + +    I +Q  V +V+  +GL +D     V 
Sbjct: 432  LGISLLSHLTSLQPRNAKVDGKEVPPLTALPHSSIVEQCTVTKVEPDIGLFVDTGIEGV- 490

Query: 436  TPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 492
             P +V IS V + +V  L +    YK GS  R RI+G+  ++G+     + S  E     
Sbjct: 491  -PGFVHISRVKDGKVDALYEASGPYKTGSVHRGRIVGYNSMDGMYHLSFEKSILERQYLR 549

Query: 493  HSDVKPGMVV----KGKVIAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
              DV    VV    +  ++  D   G IV+   G+    P  H+++  +  P KKF+ G 
Sbjct: 550  IEDVPIAEVVNVTIEKMIVKEDGLSGVIVKLADGITGFVPEMHLADIRLQHPEKKFREGL 609

Query: 548  ELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            ++  RVL V   +  + +T KKTLV S+ A +  + EA+      G I KI+  G FV+F
Sbjct: 610  KVKARVLSVDPAKNQLRLTFKKTLVNSEAAPIKDFGEASVGQQVQGTIVKIKPIGAFVQF 669

Query: 606  YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
            Y  ++GF P  E+      +P+  +  GQVV   ++S  P  RR+ +S         E  
Sbjct: 670  YGTLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHVISVDPERRRLVVSCKDPAAFGVEKQ 729

Query: 666  L----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKP 720
            +    +K+G LVSG V   + + V +  +     K  +   HL D          S I+ 
Sbjct: 730  MALQKLKVGDLVSGSVTEKSEDNVFLE-LKDSSLKAVLRAHHLTDKSPSKNQSALSKIRV 788

Query: 721  GYEFDQLLVLDNESS--NLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETG 776
            G   + L+VL+ +    +++LS K SL+ ++Q  Q  +  +      +V G+V NI  T 
Sbjct: 789  GQTLEDLVVLEKDEGRRSIVLSLKPSLVKASQNGQFLTTLADAKVGKLVQGFVRNITPTA 848

Query: 777  CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--- 833
             FV+F G LT   P+S      +A       + Q++   +  V  E  R+ +S+  +   
Sbjct: 849  VFVQFGGNLTALLPKSMISTQNQALEDFGLRLHQAIEVKVHSV--EDKRLVVSMPDAEAP 906

Query: 834  -----------CCSSTDASFMQEH-----FLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
                         ++ DAS           + + +IA ++ ++ N           +   
Sbjct: 907  KDTKPRHEAKPVSNAVDASITSTDDISVGTVTKARIASIKKTQLN---------VALADN 957

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV--AKAERLVD 935
            ++G+V  S  F          D +  IT+ +   +      +I   ++ V  A+  R + 
Sbjct: 958  VQGRVDISEVF----------DSWDEITNAKDPLSKFTQNQIIDVRVIGVHDARNYRFLP 1007

Query: 936  LSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL-PEYN 994
             S +T        A  +    K + K  A  D+    +    V   ++ +L ++L P   
Sbjct: 1008 FSHRTANSVLELTAKPSSVRAKGQYKPLAMADVKAGSSWLTFVNNNEDKWLWVNLSPAVR 1067

Query: 995  HSIGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK 1053
              I  + VSD ++  K  ++ F  G ++ A V+A+ + +  G+L L  ++    E    +
Sbjct: 1068 GRIRSSEVSDDSSHGKDLRQNFPVGTALRARVLAVDADN--GKLDLSARSARPNEHMKWE 1125

Query: 1054 RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKI 1113
              +K       +++ A +T++   ++  +        + I ++NDD  +      +  K 
Sbjct: 1126 ELEKD------TVMHARVTKVNDRQVFFQISDSVAAPVQIIDLNDDYDHA-----NPLKY 1174

Query: 1114 GQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEECDVSIGQRVTGYV 1171
             +    R+   S   + KK     LS + S +  SE  +  K +     +  G  + G+V
Sbjct: 1175 SKNDIVRVSVVSIDKNHKK---LRLSARESRVLSSELPVKDKEITSVSQIEQGTILRGFV 1231

Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLR 1231
              V ++   +T+   + A + I D     + L++++  F + + V G V S++K      
Sbjct: 1232 KNVSDKGLFVTLGGDVTALVRISD--LSDAFLKDWKEHFQVDQLVKGRVTSVDK------ 1283

Query: 1232 LVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
              L   Q  +    VD     +  +  + EG ++ G++ K+      +++    ++ G  
Sbjct: 1284 -TLGHVQMSLKASAVDEDYKPLPGYGDLKEGQVITGKVRKVADFGAFILIDKSANVSGLC 1342

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            H TE+ +  V D    Y EG  VK  +L +
Sbjct: 1343 HRTEMADKPVKDATKLYREGDSVKAIILSV 1372



 Score =  210 bits (535), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 117/274 (42%), Positives = 173/274 (63%), Gaps = 11/274 (4%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L+ + P+T  +FERL+   PNSS +WI YMAF + ++++ KAR +AERA+ TIN+REE E
Sbjct: 1515 LDANGPQTAGDFERLLLGQPNSSALWIAYMAFHMQVSELAKAREVAERAINTINVREETE 1574

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLN+W+AY NLE  YG   +E++ +VF+RA QY D  +VH  L  +  ++ ++  ADEL 
Sbjct: 1575 KLNVWIAYLNLEVAYGT--DESLDEVFKRACQYNDDLEVHERLASICIQSGKHDKADELF 1632

Query: 1773 YKMIKKF-KHSCKVWLRRVQRLL---KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828
              M+KKF   S KVWL     L    K    G +A++ RA+ SL  H H++  S+ A LE
Sbjct: 1633 QAMVKKFGSKSPKVWLNYAHFLYTSAKSPDRG-RALLPRAMKSLGSHAHLELASKFAGLE 1691

Query: 1829 FK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAI-SLSLP 1884
            F+   G  +RGR++FEG+LS YPKR DL    LD E+  G D  ++R +FER   +  L 
Sbjct: 1692 FRCPGGDPERGRTVFEGLLSTYPKRLDLRGQLLDLEVAAGSDKAVVRDVFERGTKAKGLK 1751

Query: 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
            PK+ K  F+++ ++E++ G+ +  E V  KA E+
Sbjct: 1752 PKQAKKWFQRWAKWEEANGDAKSREKVSAKAQEW 1785



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 187/448 (41%), Gaps = 55/448 (12%)

Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMKK---SFLWEL-SIKPSMLTV--------SEIGSK 1153
            NL   +KIG  V AR+I      D  K   S L  L S++P    V        + +   
Sbjct: 405  NLEKKYKIGSKVKARVICNFPTSDNLKLGISLLSHLTSLQPRNAKVDGKEVPPLTALPHS 464

Query: 1154 LLFEECDVSIGQRVTGYVYKVDNEW--ALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
             + E+C V+  +   G       E     + ISR    ++  L  A  P +     R   
Sbjct: 465  SIVEQCTVTKVEPDIGLFVDTGIEGVPGFVHISRVKDGKVDALYEASGPYKTGSVHRGRI 524

Query: 1212 IGKAVTGHVLSINKEKKLL-RLVLRPFQDGISDKTV-DISNDNMQTFIHEGDIVGGRISK 1269
            +G      +  ++ EK +L R  LR     I D  + ++ N  ++  I + D + G I K
Sbjct: 525  VGYNSMDGMYHLSFEKSILERQYLR-----IEDVPIAEVVNVTIEKMIVKEDGLSGVIVK 579

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
            +  G+ G V    P ++       L +I +  P   + EG  VK +VL +         +
Sbjct: 580  LADGITGFV----PEMH-------LADIRLQHPEKKFREGLKVKARVLSVDPAKN---QL 625

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
             L+ + +L              V++    ++   + S    VQG +  +   G F+    
Sbjct: 626  RLTFKKTL--------------VNSEAAPIKDFGEASVGQQVQGTIVKIKPIGAFVQFYG 671

Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
             L   + +  +S+ ++  P + F  G++V   V+SV+P  +R+ V+ K  D       + 
Sbjct: 672  TLRGFLPIGEMSESFIRDPNEHFRTGQVVNVHVISVDPERRRLVVSCK--DPAAFGVEKQ 729

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSEDHVDNIETIYRAG 1506
              L  L VGD+V G +       +F+ +++++L  +    H+++ S     +  +  R G
Sbjct: 730  MALQKLKVGDLVSGSVTEKSEDNVFLELKDSSLKAVLRAHHLTDKSPSKNQSALSKIRVG 789

Query: 1507 EKVK-VKILKVDKEKRRISLGMKSSYFK 1533
            + ++ + +L+ D+ +R I L +K S  K
Sbjct: 790  QTLEDLVVLEKDEGRRSIVLSLKPSLVK 817


>gi|326532510|dbj|BAK05184.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 301

 Score =  218 bits (555), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/187 (56%), Positives = 142/187 (75%), Gaps = 2/187 (1%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           V +G++VSGVV+ VTP AVVV V   G+SKG+I  EHLAD+      +K+++KPG+EF+Q
Sbjct: 102 VPVGTIVSGVVERVTPEAVVVSV--NGFSKGSILNEHLADYHGQTVRLKNLLKPGHEFNQ 159

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           LLVLD +  NL+LSAK+SLIN+   +PS+ S I    +VHGY+CNII+ GCFVRFLG LT
Sbjct: 160 LLVLDAKGQNLILSAKHSLINTRNDIPSELSQIQAGVIVHGYICNIIDGGCFVRFLGHLT 219

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           GF+P+ KAVD     LS  ++VGQSVRS++L+VN E+ R+ LSL+ S CSS D SF+Q +
Sbjct: 220 GFSPKDKAVDRPIEKLSDAFFVGQSVRSHVLNVNEESSRVKLSLQHSKCSSADCSFIQGY 279

Query: 847 FLLEEKI 853
           FLL++K+
Sbjct: 280 FLLDQKV 286



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE--------IVKPGKKF 543
           T++ V  G +V G V  V     +V   G  K      H++++         ++KPG +F
Sbjct: 98  TNTSVPVGTIVSGVVERVTPEAVVVSVNGFSKGSILNEHLADYHGQTVRLKNLLKPGHEF 157

Query: 544 KVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 603
               +L+  VL  K + + ++ K +L+ ++  I S  ++    +I HG+I  I   GCFV
Sbjct: 158 N---QLL--VLDAKGQNLILSAKHSLINTRNDIPSELSQIQAGVIVHGYICNIIDGGCFV 212

Query: 604 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           RF   + GF+P+ +    P  + S  + VGQ V+  +++    S R+ LS  
Sbjct: 213 RFLGHLTGFSPKDKAVDRPIEKLSDAFFVGQSVRSHVLNVNEESSRVKLSLQ 264


>gi|340386400|ref|XP_003391696.1| PREDICTED: protein RRP5 homolog [Amphimedon queenslandica]
          Length = 267

 Score =  218 bits (555), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/259 (40%), Positives = 177/259 (68%), Gaps = 3/259 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P++ D+F+RL+ ++PNSS +W++YMAF L  A+V+KAR+ AER L  I+ REE+EKLN+W
Sbjct: 7    PQSADDFDRLLVANPNSSSLWLQYMAFYLHTAEVDKARATAERGLAAISFREEDEKLNLW 66

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            V + NLEN YG+   E++ +VF+RALQ  D  +++  L+ ++  + + + AD+L   M K
Sbjct: 67   VGFLNLENMYGDS--ESLDQVFKRALQQNDQFEIYTRLIDIHVTSNKPEYADQLYQIMCK 124

Query: 1778 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
            KF  + +VW +  + L++Q + +  + ++QR+  SL + +HI    Q A  EFK G  +R
Sbjct: 125  KFSSNIQVWSQYGRFLMEQGKADLARKILQRSFKSLTKKQHIDITKQFAQFEFKYGEMER 184

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
            G ++FE ++S YP++ D+WS+Y+D   + G++D +R +FERA+SL L   K +FL+K+Y+
Sbjct: 185  GCTLFENLVSSYPRKVDIWSVYIDMLTKKGEMDRVRDVFERAVSLKLSSVKKQFLYKRYI 244

Query: 1897 EYEKSVGEEERIEYVKQKA 1915
            E+E+  G +  +E V+ K+
Sbjct: 245  EFERKHGTQSLVETVQAKS 263


>gi|71032245|ref|XP_765764.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352721|gb|EAN33481.1| hypothetical protein TP01_0237 [Theileria parva]
          Length = 382

 Score =  217 bits (553), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 211/377 (55%), Gaps = 26/377 (6%)

Query: 1564 ENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAK 1623
            EN  +AV++       G + +  +I  R      +  L+ + P++ N    N+   D  K
Sbjct: 4    ENPLIAVKNDHKGKNSGRNKMKNKIPDRNKKINKKSQLNGKNPNLSNEKVNNKEEKD-GK 62

Query: 1624 TIDEKN----NRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSF 1676
              ++K+    N +   K + E E +IR  E+R+ +K+  R P+   +FERLV ++  SS 
Sbjct: 63   PRNKKDKKGINLNIDSKLEYENEIKIRELEDRIADKEWMRNPNSVMDFERLVVTNARSSA 122

Query: 1677 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736
            VWI YMAF ++  D+E AR   +R L+ I+ RE  EK+N+WVAY N+E  YGN     V+
Sbjct: 123  VWIAYMAFYINSGDIEMARKTVKRGLKAIDFREMVEKMNLWVAYLNMECIYGN----NVM 178

Query: 1737 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1796
            ++F +A QY D K +HL ++ ++    Q   A E+  K IKKF  S KVWL  + RLL +
Sbjct: 179  EIFNQATQYNDSKSIHLKMINIFVNNNQLDKAKEICEKAIKKFHKSKKVWLAYL-RLLYE 237

Query: 1797 QQEGVQAVVQ---RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1853
              +  +A  Q     +  +P  K I   S TA+LE+K+G  + G+  FE IL + PKR D
Sbjct: 238  NMKDFEAGRQLHKTCITRIPEKKRINITSSTALLEYKHGSPEMGKMYFENILLDNPKRMD 297

Query: 1854 LWSIYLDQEIRLG----------DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG 1903
            +W+ YL   I+L            +  +R LF+RAI+L L PKKMK +F K+LE+E + G
Sbjct: 298  IWNQYLTAHIKLNMDESKTQKSEGLKNVRNLFDRAITLDLKPKKMKIIFSKWLEFECAYG 357

Query: 1904 EEERIEYVKQKAMEYVE 1920
             E+  E V++KA++YVE
Sbjct: 358  TEKSKESVQKKALKYVE 374


>gi|324500113|gb|ADY40064.1| Protein RRP5 [Ascaris suum]
          Length = 1854

 Score =  217 bits (552), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 104/265 (39%), Positives = 177/265 (66%), Gaps = 4/265 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P + +EF+RL+  SPNSS +WI+Y++F +S  +++KAR+IAERAL  IN REE+E  NIW
Sbjct: 1584 PTSQEEFDRLLTGSPNSSHLWIRYISFFVSEKNIDKARAIAERALNVINFREEDEIFNIW 1643

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
             AY NLE  +G    E++  +F+RA+  CD  K++  ++ +Y+   + + AD LL +M+K
Sbjct: 1644 TAYLNLELSFGTA--ESLRAIFERAISNCDALKMYKQMVRVYQNVHKIEEADTLLEEMLK 1701

Query: 1778 KFKH-SCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835
            KF+     VW    Q L++ ++ +  + ++++A  SLP+  H+  IS+ A +E+K G ++
Sbjct: 1702 KFRQEDLDVWFIFGQHLMQTKRFDKARELLKKATKSLPQKHHVMVISRFAQMEYKFGDSE 1761

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            +G+++FE ILS YP++ D+WS+Y+D  I+   ++  R +FER  S++L    M+  FKK+
Sbjct: 1762 QGKTLFESILSAYPRKADVWSVYVDMLIKSNKINEARQVFERVTSINLGTHNMRTFFKKW 1821

Query: 1896 LEYEKSVGEEERIEYVKQKAMEYVE 1920
            L+ E+  G EE+ + VK++A+ Y+E
Sbjct: 1822 LDMEQKHGSEEQQKLVKERAVHYIE 1846



 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 225/1039 (21%), Positives = 415/1039 (39%), Gaps = 148/1039 (14%)

Query: 183  LPTIFHVGQLVSCIVLQL-----DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
            L  +F  GQ+++  VL+         +K+ G R+  ++   S++   L   ++  G+VL 
Sbjct: 114  LADVFVPGQMIAYKVLRAATATDSKGRKQGGTRRAVVTCCPSVVNAHLMPSSLLNGLVLN 173

Query: 238  AYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSGID--VKPGLLLQGV--VRSIDRTR 291
              V+S+ED G I+ FGL S    GFLP   L + + ++  ++  +LL  +  + ++ +  
Sbjct: 174  GSVESVEDKGVIISFGLRSCELRGFLPSAALPQYANMETLIRGQVLLIRIQHLSAVGKVG 233

Query: 292  KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 351
            +V+ +S+ P+ V     + ++ + +++L+PG ++         +GV +       G +  
Sbjct: 234  RVINVSAIPE-VENLDERVVQKLHLNMLMPGTILQAEPIQSAPHGVYVELGNGVKGFIRK 292

Query: 352  FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-----VK 406
             HL    P    ++     + + A ++F    S+ + L+ +P ++    P        + 
Sbjct: 293  QHL----PPRLRRDLSKLVRSIRAVVMFCQQNSQMLVLSAHPDIIALSKPQKRNTFEGIA 348

Query: 407  VGDIYDQSKVVRVDR----GLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
            +GD     +V  VDR       L+LD         AY T S +     +     YK GS 
Sbjct: 349  IGDKV-LCEVNEVDRYGNVHFDLILDNAPKGSLVSAYATKSHLQSANEKD---AYKPGSV 404

Query: 463  VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
             +VR++ +R +E       K   F   + +  D  PG  ++ K+ ++ + G  ++    +
Sbjct: 405  HQVRVISYRLIERQLVVSNKREIFVQKMVSLVDAVPGEKIRAKIESIKANGLGMKVYDRI 464

Query: 523  KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSY 580
             A  P+ H+++ +  +  K +  G  L  R+L   +  +R+ +T K +L+ +   ++  Y
Sbjct: 465  SAFIPIAHVADKQFTRIEKHYSKGQMLDCRILEADALKRRLILTSKPSLLNTSYKLIKDY 524

Query: 581  AEATDRLITHGWI-TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV-VKC 638
            +      +T G++  K E  G  + FY GV+ +             P     +G+V + C
Sbjct: 525  SAENVGAVTLGYVRAKHENGGLLIGFYGGVRAYM-----------FPKEAARLGEVKLGC 573

Query: 639  RI---MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG------VVDVVTPNAVVVYV 689
             +   + S+   R+  L  +  P+  S+  +++  + + G          VT N+ VV  
Sbjct: 574  TVQVNVQSVDVERQRMLVAVADPSLTSDTAILRSNAFMEGKDVPLCYSATVTGNSQVVTG 633

Query: 690  IAKGYS-----------KGTIPT----EHLADHLEH-ATVMKSVIKPGYEFDQLLVLDNE 733
              +G              GT+ T    E L+D L+     +    K G +  Q+ VL  +
Sbjct: 634  TKQGQRIDLSVHLGKKLGGTVQTSMALELLSDTLDPLVDTLTDCFKIGSKIPQVTVLSEK 693

Query: 734  SSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHG-YVCNII-----ETGCFVRFLGRLT 786
            +  + +S+K  LI+  ++ P     IH  + +  G  VC  +     E G FV   G   
Sbjct: 694  AGIIKVSSKRFLIDWLERHPP----IHSIDDLSKGLLVCGTVTQRHSEMGYFVELAGGSA 749

Query: 787  GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
              AP    VD    D      VGQ+V + +  ++ E  R +L L    C   D     E+
Sbjct: 750  LVAPARFIVDSTEEDPQNEVQVGQTVLARVSSLDVERKRFSLILNPPLCCELDDG---EN 806

Query: 847  F------LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE----- 895
            +      LLE  IA          + +W    + G      +  S D  +VV        
Sbjct: 807  WCSLGLRLLEYTIA----------DWEWCAANLEGGKELPSLGASVDVTLVVPLNDALTV 856

Query: 896  EHSD--VYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            E SD  + G+             G  ++A +LDVA    L    L+    D  +E  S  
Sbjct: 857  EWSDQKLRGYARKGNFPERKYTKGETLKALLLDVA----LPSCELEFYIFDEDKE--STL 910

Query: 954  QAQKKKRKREASKDLGVHQTVNAIVEIVKENYL------------VLSLPEYNHSIGYAS 1001
             + K K+     + + +   V   V  VK +++            V+ LP   H      
Sbjct: 911  HSAKTKKGHTKRRKVELCSEVEVCVAAVKRDFIATVTMEDSFERAVIYLPSRFH------ 964

Query: 1002 VSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAG---------RLLLLLKAISETET--- 1049
              +  T   P  +F  G    A V     S+  G           LL  K  ++ E    
Sbjct: 965  -PNIVTPSAPAGRFECGAVCKAVVKQFCGSTLIGLAEGDLAFATALLSAKVKTKQEKKRG 1023

Query: 1050 --SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
              S+SKR K    Y    +   +  +     + L+   G  GR+H +E+++       N 
Sbjct: 1024 ADSASKRVKPFMVYPAKVIGPWKRGKQSACAVELELPGGILGRLHGSELDESLLENERNP 1083

Query: 1108 FSNF---KIGQTVTARIIA 1123
             + F   KI + V  ++I+
Sbjct: 1084 IAAFLREKIAKNVYVKVIS 1102


>gi|393909953|gb|EJD75660.1| S1 RNA binding domain-containing protein [Loa loa]
          Length = 1790

 Score =  216 bits (550), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 191/302 (63%), Gaps = 5/302 (1%)

Query: 1622 AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIK 1680
            A  I+E+N    K++ + E E+++   E ++LE +  P   ++F+RLV  +PNSS +WI+
Sbjct: 1482 ADNIEEQNRPKTKEELQIEEEKKLINRERKILEANWIPDNTNDFDRLVAGTPNSSILWIR 1541

Query: 1681 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1740
            Y+ F L   DVEKAR++A+RAL  IN REE+E  N+W AY NLE  +G    E++  VF 
Sbjct: 1542 YITFFLEQNDVEKARAVADRALSVINFREEDEIFNVWTAYLNLEGNFGT--SESLKAVFD 1599

Query: 1741 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS-CKVWLRRVQRLLKQQQ- 1798
             A++  D  K++  ++ +Y+   + +  D+LL +M+K+F+H    VW    Q LL+ ++ 
Sbjct: 1600 NAIKNTDALKMYKQMVKIYQNLGKIQELDDLLDEMLKRFRHDDLDVWFIYGQHLLETKRP 1659

Query: 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1858
            +  + ++++A+  L R  H+  +S+ A LEFK G  ++ +++FE IL+ YPK+TD+W++Y
Sbjct: 1660 DKARDLMKKAINCLSRKHHVTILSRFAQLEFKFGDMEQSKTIFENILNSYPKKTDVWTVY 1719

Query: 1859 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
            +D  I++G  +  R L ER  +L L   K++  FKK++  E+  G+EE+   VK++A+ Y
Sbjct: 1720 IDLLIKVGKFEDARQLLERVTALKLSTHKIRLFFKKWVGLEQMHGDEEQQNNVKERALHY 1779

Query: 1919 VE 1920
            ++
Sbjct: 1780 LQ 1781



 Score =  139 bits (350), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 232/962 (24%), Positives = 413/962 (42%), Gaps = 123/962 (12%)

Query: 233  GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRS 286
            G+VL   V+S+ED G I++ GL S    GFL   +L     + S I+ +P LL      S
Sbjct: 152  GLVLNGVVESVEDKGVIINLGLQSVELKGFLAEKHLPPTFQKESLIEGQPLLLRIQNENS 211

Query: 287  IDRTRKVVYLSSDPDTVSKCVTK-DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 345
             ++  +VV LS+ P+   +C+    +K + ++ L+PG ++         +GV ++     
Sbjct: 212  SNKKSRVVSLSAVPEM--ECLDDIAVKNLKLNDLMPGTLLLVNPLQPTASGVYVNIGNDI 269

Query: 346  TGTVDIFHLQNTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NR 399
             G V+  HL        ++ND +   K     ++F    S  + L  +P ++       R
Sbjct: 270  KGYVNRQHL-----PPRYRNDSFKCLKSFKTIVMFCQQNSNLLALNGHPDIIAASKFAKR 324

Query: 400  APPSHVKVGDIYDQSKVVRV----DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
                +V  GDI  + KV  V    D    L+L          A+   +++ E+ V     
Sbjct: 325  TNFENVHTGDII-ECKVSNVNKNGDVNFDLVLHGDERNSLVAAFARKTEL-EDHV----- 377

Query: 456  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
            +YK+G+  + R+L F+ +E +     +       +    D  PGM V  KV +V   G  
Sbjct: 378  EYKKGTIHQTRVLSFKMVERILIVATRKDILAQKMVCVKDAVPGMKVIAKVESVLPKGLF 437

Query: 516  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSK 573
            V+    +    P  H+S+  I +  K F VG EL  R+L V    +R+ +T+K++L  +K
Sbjct: 438  VKIYNSIPGFIPKIHLSDKLITRIDKHFAVGDELTCRILTVNEAKERLILTNKQSLTTNK 497

Query: 574  LAILSSYAEATDRLITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSM 629
              ++ SYAE T   IT G+I  + +H   G  + FY G +GF  P+    L       + 
Sbjct: 498  DTVIKSYAEVTTNAITTGYI--VSQHPSGGLIIGFYGGTRGFMFPKETERL------GTN 549

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFM-----------MKPTRVSEDDLVKLGSLVSGVV- 677
              VG  V+ R++S  P   R+ ++              +P  +   + V   ++V  ++ 
Sbjct: 550  IKVGLTVRVRVVSVDPQRGRMLVAVANAANDGTEIAKAQPFLIDGGNSVSFSAVVMNILS 609

Query: 678  --DVVTPNAVVVYVIAKGYS-----KGTIPTEHLADHLE--HATVMKSVIKPGYEFDQLL 728
              +   PN ++   +  G       K  IP E L+D L+   A++ +S I  G    ++ 
Sbjct: 610  NDNKSKPNEILNVTVRLGKKLGGKVKAFIPKELLSDCLDLPFASLSES-IALGSVLPKVT 668

Query: 729  VLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNII----ETGCFVRFL 782
            VL + + NL +++K  +I+  ++ P  +   ++    +V G   NII    E G FV   
Sbjct: 669  VLGDVAGNLKVTSKRFMIDWLEKHPRITGLQNLTKGELVCG---NIIRKHKEMGYFVELA 725

Query: 783  GRLTGFAP----RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            G     AP    R  A+     +L     +GQ+V + +  V+ E  R  L L    C   
Sbjct: 726  GGSALTAPARFIRPMALPVSMQELQ----IGQTVVARVSSVDLERKRFALILDAHLCIPP 781

Query: 839  DAS---FMQE--HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
             A    F     H+ LEE +    ++  N S++       IG  I+ KV E ++  VVV 
Sbjct: 782  GAELDYFAPSIVHYSLEE-LNWFIANNPNYSQVPE-----IGECIDIKVVEISECSVVVQ 835

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID-RFREANSN 952
            +  + D+ G   ++      ++ GS  +A +LDV    +L    L    +D   +  N  
Sbjct: 836  YASNPDLKGCAINNT---NILQKGSCAKALVLDV----KLPTCELVLFLLDGGVQHLNEK 888

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKE-NYLVLSLPEYNH---SIGYASVSDYNTQ 1008
            +       K+E    + +H+   A+  +  E +  V+S+P   H   +I    + + + Q
Sbjct: 889  KLQSLLCSKKEFDAKIWLHKREYAVATVETEKSAFVVSIPMRLHPNVNITSVDLDENSNQ 948

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGS 1065
                 + ++G  +I T M +         L+  K  +  +++  K+ K+   Y    +G 
Sbjct: 949  CIITPKLISGNVMIGTAMEILKKYG----LIHRKFKTPIKSAVKKKLKQFKIYTAKVMGM 1004

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVN----DDKSNVVENLFSNFKIGQTVTARI 1121
              + ++     LEL      G  GR+H +E +    D  S  +++     K G+TV  +I
Sbjct: 1005 WSKGDLYNAIELEL----PDGSIGRLHASEFDESFLDQTSQPIQSFLKKRK-GKTVNVKI 1059

Query: 1122 IA 1123
            + 
Sbjct: 1060 MC 1061



 Score = 40.4 bits (93), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 81/183 (44%), Gaps = 6/183 (3%)

Query: 1348 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1407
            ++T  D   + +  ++D  P M V   V++V  KG F+ +   +   +   +LSD  +  
Sbjct: 401  VATRKDILAQKMVCVKDAVPGMKVIAKVESVLPKGLFVKIYNSIPGFIPKIHLSDKLITR 460

Query: 1408 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1467
             +K F +G  +  R+L+V    +R+ +T K S + T   + I + + +    I  G I  
Sbjct: 461  IDKHFAVGDELTCRILTVNEAKERLILTNKQSLT-TNKDTVIKSYAEVTTNAITTGYIVS 519

Query: 1468 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
                G  I        G     E      + + T  + G  V+V+++ VD ++ R+ + +
Sbjct: 520  QHPSGGLIIGFYGGTRGFMFPKE-----TERLGTNIKVGLTVRVRVVSVDPQRGRMLVAV 574

Query: 1528 KSS 1530
             ++
Sbjct: 575  ANA 577


>gi|339240195|ref|XP_003376023.1| putative S1 RNA binding domain protein [Trichinella spiralis]
 gi|316975284|gb|EFV58732.1| putative S1 RNA binding domain protein [Trichinella spiralis]
          Length = 2154

 Score =  216 bits (550), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 228/842 (27%), Positives = 397/842 (47%), Gaps = 121/842 (14%)

Query: 1138 LSIKPSMLTVSEIGSKLLFEECDVS--IGQRVTGYVYKVDNEWALLTISRHLKAQLFI-- 1193
            +S++PS+    E G+  + EE  V+  +G+  +  V  VDN +  L I+   + ++F   
Sbjct: 1369 ISVQPSI----ESGTAPVIEEKGVAMAVGRLYSASVLSVDNRYVHLFIAGRYRGRIFATE 1424

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
            LD  +   +  E  +   +G  VT  V+   + +K   L+     +     +   S  N 
Sbjct: 1425 LDDQFL-QDGSEPLKTVRLGTTVTVKVIGTKRIRKGGSLM----AECTMKSSKLFSKRNK 1479

Query: 1254 QTFI--HEGDIVGGRISKIL--SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
            +T I   E  ++G  ++ ++         V + P   G V F  +      DP S +  G
Sbjct: 1480 KTIIGYKENFVIGEELNVLVVERKRHHFNVVVNPRWSGEVSFYTV------DPRSAWRNG 1533

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
            Q  K  VL++    R      L L +    M      +L  +  T GK L + +      
Sbjct: 1534 QLRKVYVLDVDVEKRW-----LKLSALKPAMV-----ELKENGYTFGKLLSRDD------ 1577

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-----------VESPEKEFPIGKLV 1418
                  K++++K CF ML        L+ ++ D Y           VES  K F +GKL 
Sbjct: 1578 ------KDLSTKLCFSMLGGARGVASLV-DICDNYDHAVDKWRLLQVESYYKLFVVGKLE 1630

Query: 1419 AGRV-LSVEPLSKRVEVTLKTSDSRTASQSEINN------LSNLHVGDIVIGQIKRVESY 1471
                 +S+ P       +L   +S  A+ + I +       S L VG++  G + +V  Y
Sbjct: 1631 NNFWHVSLRP-------SLTGENSSEANNATIRDDPLYSLASELAVGNVYRGFVSKVRHY 1683

Query: 1472 --GLFITIENTNLVGLCHVSELSE--DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
              GL + + +  L G      +SE  D V  ++  +  G  V VK++ +DK    ++L M
Sbjct: 1684 KKGLTVLLGH-ELFGNVPCGLISECTDAV-RLDQTFPIGTVVTVKVMSLDKSNGNLTLSM 1741

Query: 1528 KSSYFKNDADNLQMSSEEESDEAI-EEVGSYNRSSLLENSSVAVQD---MDMESEDGGSL 1583
             S                  D  + ++V    R  L  + S++ Q    ++   E   +L
Sbjct: 1742 LSK-----------------DTGLPDQVPEKCRKLLQSDDSISSQAQLVLNKAEESPAAL 1784

Query: 1584 VL---AQIESRASVPPLEVNLD-DEQPD---MDNG------ISQNQGHTDEAKTID---E 1627
             L   +  ES A+   ++V+L+ D   D   M NG       + NQ  +  +   D   E
Sbjct: 1785 PLRACSWFESAATKTLIDVSLNADNVSDGTLMVNGKHGAFIANGNQCSSAASGENDYELE 1844

Query: 1628 KNNRHAKKKEKEER--EQEIRAAEERLLEKDAP-RTPDEFERLVRSSPNSSFVWIKYMAF 1684
               R  K K + +R  E+E+   E  L++ + P  T ++++R + +SP+SS +WI+YMA+
Sbjct: 1845 VAEREGKSKLELDRLDEEEVLKKELMLMDPERPIETVEDYDRALVASPSSSMLWIRYMAY 1904

Query: 1685 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1744
             +   +++KARS+A +AL+TI   EE E+ N+W+A  NLENEYG    E + +  + AL 
Sbjct: 1905 FVQCNEIDKARSVASKALKTIAYNEEKERFNVWIALMNLENEYGT--GETMDETVRNALL 1962

Query: 1745 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EGVQA 1803
              D ++V+L LL +Y+R+++   AD +   ++KK++    VW+   +  ++  + E   A
Sbjct: 1963 VNDQQQVYLQLLKIYDRSKKLDAADAVTEVLLKKYRSQFDVWITVGKHFMQTNRAEKAHA 2022

Query: 1804 VVQRALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862
            +++RA+ SLP + H+  +S+ A +EFK  G  +RG ++FE IL+++P+R D+W +Y+D  
Sbjct: 2023 IMERAMKSLPFNMHVDLMSRFAQMEFKFEGDVERGCTIFENILNDHPRRFDIWLVYVDLM 2082

Query: 1863 IRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922
             +  ++D  R L  R  SL +   KM+  FKK+LE E   G  E +  VK +A +YV + 
Sbjct: 2083 AKHRNIDEARPLLRRVTSLKMSAHKMRSFFKKWLELENRYGTAETVADVKSRATDYVNNV 2142

Query: 1923 LA 1924
             +
Sbjct: 2143 FS 2144



 Score =  159 bits (401), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 345/1531 (22%), Positives = 623/1531 (40%), Gaps = 255/1531 (16%)

Query: 54   FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKK--KTERKANETVDDLGSLF 111
            FPRGG H      R +I+ +       +   LH + KK K   K + KA  TV +     
Sbjct: 338  FPRGGDH------RGQINFKKRKSL--LPPDLHGRRKKFKTLDKLKSKAT-TVSENNHKV 388

Query: 112  GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPIL 171
             D  + ++  +  K+  +   AG+     V    + ++ + +PG + G+ +A+      +
Sbjct: 389  DDDFASRV--WTKKLNNETCVAGLLTVACVHYCWDTEVNVEMPGNMNGILKASSVSQSFV 446

Query: 172  DNEIEANEDN---LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKI---WL-SLRLSLLYKG 224
            D+     ED     L ++F   +L+ C+ + +D + ++    K+   WL +   + L   
Sbjct: 447  DHVQAKREDEEAATLASLFEPAELI-CVKV-IDKEMRQFASGKMHTTWLVTTNPADLNAH 504

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLL 280
            ++  T+++  V+   V+S+E+ GY++  G  +  GFL          EN  + +   +L 
Sbjct: 505  ITPSTLRKHAVIGCAVRSVEEKGYLMDLGFQNVHGFLSFAEACRFYPENKQLPIGKPILC 564

Query: 281  QGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISI---------DLLVPGMMVSTRVQS 331
              V  +     +VV L+        C+   L G  +          LL+PG++  T VQ 
Sbjct: 565  TVVEPAAATGGRVVQLN--------CLNGQLNGTDVPKIDENFPKSLLMPGLLCRTTVQQ 616

Query: 332  ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL 391
              + G++    +   G + +             N+ +    V   + +  P S  VG + 
Sbjct: 617  HCQQGLICKLNSDLYGWLSLADSPKRRKRA-LANEQSLQGAVELMVTYSLPQSSMVGFSS 675

Query: 392  NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT----ISDVAE 447
              YLL            D     +  +V R         STP     ++T    I +VA 
Sbjct: 676  ADYLLRRTRLVERFSF-DAKGSLQTCKVRR---------STPEKV-QFITDSGAIVNVAN 724

Query: 448  EEVRK-------------LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494
              +RK             L  K+      RVR++G   L+ +  G   A           
Sbjct: 725  CRLRKPVGKKKKSTEKYKLATKH------RVRMIGMSTLKMVYHGSCLACDVRQPFSKID 778

Query: 495  DVKPGMVVKGKVIAVDSFGAIVQ----FPGGVKALCPLPHMSEFEI-VKPGKKFKVGAEL 549
            +   G+ V  KV+ V    A+V+    F G + AL    H S+  + V    KF VG  +
Sbjct: 779  EAAVGLRVTAKVVRVSDTAALVKVFHTFDGKIDAL----HFSDGLVSVGCRAKFVVGQTV 834

Query: 550  VFRVLGVKS--KRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFY 606
              RVL V    +R+ +T K++LVKS L +LS+Y AEA   +     +  +E+ G  + FY
Sbjct: 835  PTRVLAVDKDLQRLYLTAKRSLVKSDLPLLSAYTAEAVGNVYDGFVVQLLERSGVLIGFY 894

Query: 607  NGVQGFAPRSELGLDPGCE---PSSMYHVGQVV----------KCRIMSSIPASRRINLS 653
            N V+G        L  G +   P+ +YHVGQVV          K RI  ++P      L 
Sbjct: 895  NNVRGVLDERAFQL-AGYQKQSPTDVYHVGQVVRVLVVRVDVDKRRIDLALPECSARGLQ 953

Query: 654  FMMKPT-RVSEDDL-------VKLGS----------LVSGVVDVVTPNAVVVYVIAKGYS 695
            +M+  + +VS   L        + G           L+   V  +  + ++V ++  G S
Sbjct: 954  WMLGCSGKVSNSKLEADVGQCARAGGSKRKPPPFFELLKAEVKALRDDWLLVELVEYGVS 1013

Query: 696  KGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLP 753
               +P+ HL D L    ++ +  + G + D  +VL N    L+++AK SL+   +  Q P
Sbjct: 1014 -ARLPSAHLTDSLTTGHLLLASFRVGDKLD--VVLFNSVKGLVVTAKPSLLYLMRNMQAP 1070

Query: 754  SDASHIHPNSVVHGYVCNI-IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
                 +    +V G +  +  E G F+   G ++   P+SK       D      +G +V
Sbjct: 1071 RSLDDLKCGQLVTGVLARVHPEHGYFIDLPGNMSALCPKSKVEWKCETDAGLANLIGATV 1130

Query: 813  RSNILDVNSETGRITLSLKQSCCS----STDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
               ++ VN + G++ ++LK   C      T  + ++++  LEE+  +L     N S   W
Sbjct: 1131 VGRVMTVNPQAGKLIINLKLKKCLLNGLHTSIALLKQY--LEER-ELLSQRFRNPSNTDW 1187

Query: 869  ----VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL---AGATVESGSVIQ 921
                +  + IG ++E  V    + G++ + E+   V G      L          GS + 
Sbjct: 1188 KRRLLSKYQIGQLVECTVGMVVESGLICTVED--GVPGIFVSELLDPHWNVEYAVGSSLT 1245

Query: 922  AAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIV 981
              ++ V  +ER ++L+     +  FR+      A +++R + A  D     ++ A V + 
Sbjct: 1246 GLVVCVNYSERCLELAAMKQLLANFRQV-----ALRRRRHQPAVGD-----SLTATVLVA 1295

Query: 982  KENYLVLSLPEYNHSIGYASVS-DYNTQKFP--------------QKQFLNGQSVIATVM 1026
              + ++LS     H + Y S    YN    P              Q    +GQ ++++V 
Sbjct: 1296 NADCVLLSTA--GHGLCYMSARLHYNDFSLPRLKNPDKRQLRVRVQAYTTSGQCLVSSVR 1353

Query: 1027 ALPSSSTAGRLLLLLKAISETETSSSKRA----KKKSSYDVGSLVQAEITEIKPLELRLK 1082
                 S   R L    AIS   +  S  A    +K  +  VG L  A +  +    + L 
Sbjct: 1354 DEQLCSKIERRLR--SAISVQPSIESGTAPVIEEKGVAMAVGRLYSASVLSVDNRYVHLF 1411

Query: 1083 FGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKP 1142
                + GRI  TE++D             ++G TVT ++I  + +     S + E ++K 
Sbjct: 1412 IAGRYRGRIFATELDDQFLQDGSEPLKTVRLGTTVTVKVIG-TKRIRKGGSLMAECTMKS 1470

Query: 1143 SMLTVSE-----IGSKLLF---EECDVSIGQRVTGYVYKVDN-EWALLTISRHLKAQLFI 1193
            S L         IG K  F   EE +V + +R   +   V N  W+        +   + 
Sbjct: 1471 SKLFSKRNKKTIIGYKENFVIGEELNVLVVERKRHHFNVVVNPRWS-------GEVSFYT 1523

Query: 1194 LD--SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL-VLRPF-----QDGIS-DK 1244
            +D  SA+   +L++             +VL ++ EK+ L+L  L+P      ++G +  K
Sbjct: 1524 VDPRSAWRNGQLRKV------------YVLDVDVEKRWLKLSALKPAMVELKENGYTFGK 1571

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             +   + ++ T +    + G R      GV  LV                 +IC  +   
Sbjct: 1572 LLSRDDKDLSTKLCFSMLGGAR------GVASLV-----------------DIC-DNYDH 1607

Query: 1305 GYDEGQFVKC----KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1360
              D+ + ++     K+  + +     +HV  SLR SL G +S+ +++ +T  D P   L 
Sbjct: 1608 AVDKWRLLQVESYYKLFVVGKLENNFWHV--SLRPSLTGENSSEANN-ATIRDDPLYSLA 1664

Query: 1361 KIEDLSPNMIVQGYVKNVT--SKGCFIMLSRKLDAKV---LLSNLSDGYVESPEKEFPIG 1415
               +L+   + +G+V  V    KG  ++L  +L   V   L+S  +D      ++ FPIG
Sbjct: 1665 --SELAVGNVYRGFVSKVRHYKKGLTVLLGHELFGNVPCGLISECTDAV--RLDQTFPIG 1720

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1446
             +V  +V+S++  +  + +++ + D+    Q
Sbjct: 1721 TVVTVKVMSLDKSNGNLTLSMLSKDTGLPDQ 1751


>gi|407923743|gb|EKG16808.1| hypothetical protein MPH_06011 [Macrophomina phaseolina MS6]
          Length = 1803

 Score =  216 bits (549), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/277 (39%), Positives = 177/277 (63%), Gaps = 11/277 (3%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L+ + P++  +FERL+   PN+S +W++YMAF + + +V+KAR I ERAL+TINIRE++E
Sbjct: 1514 LDINGPQSVADFERLLLGDPNNSALWMQYMAFQIGLNEVQKAREIGERALKTINIREQDE 1573

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT---EQNKLAD 1769
            K+NIW A  NLE E GN  ++AV + F+RA +YCD +++H  L+ +Y  T   + ++ AD
Sbjct: 1574 KMNIWTALLNLEIEQGN--DDAVDETFKRACEYCDTEEMHNKLINIYTSTGRHQHSQKAD 1631

Query: 1770 ELLYKM--IKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTA 1825
            +L  +M  IK    +   WL   + ++      +  +A++ RA  S+P   H +  +   
Sbjct: 1632 DLFQRMTKIKSITPNPAFWLNYAKFVMTTLNNPDRARALLPRATQSVPTQHHRQLTANFG 1691

Query: 1826 ILEF--KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1883
             +EF   NG A+RGR++FEG+L+ +PKR DLW ++L+ E + GD D +R L+ER  S  +
Sbjct: 1692 AIEFTSANGDAERGRTVFEGLLATFPKRWDLWDMFLELEKKHGDRDNVRRLYERMSSSKM 1751

Query: 1884 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
              ++ KF+FKK+ E+E+  G+++  E V+  A EY E
Sbjct: 1752 KARRAKFVFKKWAEWEQVNGDKKTRERVEALAKEYAE 1788



 Score =  193 bits (491), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 193/772 (25%), Positives = 342/772 (44%), Gaps = 68/772 (8%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDNEIEAN 178
           ++ K ++ G  + G V ++  +D+ + LP  L G         +  + ++ +LD + +++
Sbjct: 147 LSYKRLAPGSMILGQVTQITSRDIALALPNNLTGFVPLTAVSDQFTERIEALLDQDEKSD 206

Query: 179 --------EDNLLPTIFHVGQLVSCIVLQLDDDKK---EIGKRKIWLSLRLSLLYKGLSL 227
                   ED  L  IF +GQ +  +V    +D     +  K++I LS++       +S 
Sbjct: 207 AEDTSSEDEDIELKNIFKLGQYLRAVVTSTGEDSAKGAQKNKKRIELSVKPQDANNRISR 266

Query: 228 ETVQEGMVLTAYVKSIEDHGYILHFGLP--SFTGFLPRNNLAENSGID---VKPGLLLQG 282
             +    ++ A V S+EDHG ++  GL   S  GF+      E  GID   ++ G +   
Sbjct: 267 SDLVANTMVQASVVSVEDHGLVMDLGLADGSIKGFMSSK---EVGGIDHTKIEKGSVFLC 323

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLS 340
           +V  +    K+  LS+D   +      +   +  +ID+ VPG  V   V  +   G+  +
Sbjct: 324 MVTGLSSNGKIAKLSADFQKIGNVKKANYLTEAPTIDVFVPGTAVEFLVSEVTTTGLAGT 383

Query: 341 FLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS--RAVGLTLNPYLL-- 396
            +     T D+ H        +  N Y   +KV ARI+   P    R +G+++  ++L  
Sbjct: 384 IMGLIDATADVVHAGAGASQQDLTNKYKIGEKVKARIICTFPGDERRKLGVSVLDHVLSL 443

Query: 397 ------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
                   + P   + +  I +++KV +V+   GL +D+    V  P +  IS +++++V
Sbjct: 444 TERQSADAKGPLDVLPISSIVEEAKVTKVEPIRGLFMDVGVKRV--PGFAHISRLSDDKV 501

Query: 451 RKLEK---KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV- 506
             L +    YK GS  R R++G+  ++G+    L+            DVK G VVKGKV 
Sbjct: 502 DSLSETTGAYKLGSTHRARVVGYNPVDGMYIVSLEKKVLNQPFLRIDDVKVGEVVKGKVE 561

Query: 507 ----IAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR-- 560
                A  S   IV    G+  L    H+++  +  P KK+K G  +  RVL    +R  
Sbjct: 562 KVMITARGSGAVIVNLAEGISGLVSETHIADVHLQHPEKKYKEGLAVTARVLSTDPERRQ 621

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 620
           + +T KKTLV S   + ++Y++        G I K+   G  V+FY  ++GF P SE+  
Sbjct: 622 VRLTLKKTLVNSDAPVWANYSDVQIGEQAPGTIIKLLPAGAIVQFYGDLRGFLPVSEMSE 681

Query: 621 DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR-VSEDDL---VKLGSLVSGV 676
               +P+  + +GQ V    +S      ++ +S     +R  ++ D    +++ ++V GV
Sbjct: 682 AYIKDPAEHFRIGQTVTVHALSVNAEEDKMTVSCRDPASRNAAQQDTFGSLQVTTIVKGV 741

Query: 677 VDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK-SVIKPGYEFDQLLVLDNESS 735
           V   +   V V +      KG +   HL D  E     K   I+ G   + L++L     
Sbjct: 742 VSEKSEKNVTVELEGSAI-KGILRLGHLTDGSEKKGESKIKRIRVGQTLEDLVILSKSDK 800

Query: 736 N--LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
              + LS K SL+ +AQ   LP+    +     V G+V NI +   FV F   L G   +
Sbjct: 801 RPVVTLSNKPSLVAAAQSGSLPAKFEDVKEGKPVTGFVRNIDDQRVFVEFADGLVGLLLK 860

Query: 792 SKAVDGQRADLSKTYYVG----QSVRSNILDVNSETGRITLSLKQSCCSSTD 839
           S+     + ++ KT   G     +V   IL V+    R  ++L+    +++D
Sbjct: 861 SQ----MKEEMQKTVGYGLQNDSTVTGKILSVDVRQRRFLITLRDDHQAASD 908



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 169/798 (21%), Positives = 340/798 (42%), Gaps = 127/798 (15%)

Query: 784  RLTGFAPRSKAVDGQRADLSKT---YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            R+ GFA  S+  D +   LS+T   Y +G + R+ ++  N   G   +SL++        
Sbjct: 486  RVPGFAHISRLSDDKVDSLSETTGAYKLGSTHRARVVGYNPVDGMYIVSLEKKV------ 539

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE-----SNDFGVVVSFE 895
              + + FL                    ++   +G V++GKV +          V+V+  
Sbjct: 540  --LNQPFLR-------------------IDDVKVGEVVKGKVEKVMITARGSGAVIVNLA 578

Query: 896  EHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
            E   + G ++   +A   ++        G  + A +L      R V L+LK   ++    
Sbjct: 579  EG--ISGLVSETHIADVHLQHPEKKYKEGLAVTARVLSTDPERRQVRLTLKKTLVNSDAP 636

Query: 949  ANSNRQAQKKKRKREASKDLGV-HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNT 1007
              +N              D+ +  Q    I++++    +V     Y    G+  VS+ + 
Sbjct: 637  VWANYS------------DVQIGEQAPGTIIKLLPAGAIVQF---YGDLRGFLPVSEMSE 681

Query: 1008 Q--KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS--SYDV 1063
               K P + F  GQ+V  TV AL  ++   ++      +S  + +S   A++ +  S  V
Sbjct: 682  AYIKDPAEHFRIGQTV--TVHALSVNAEEDKM-----TVSCRDPASRNAAQQDTFGSLQV 734

Query: 1064 GSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             ++V+  ++E     + ++  G    G + +  + D      E+     ++GQT+   +I
Sbjct: 735  TTIVKGVVSEKSEKNVTVELEGSAIKGILRLGHLTDGSEKKGESKIKRIRVGQTLEDLVI 794

Query: 1123 -AKSNKPDMKKSFLWELSIKPSMLTVSEIGS-KLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
             +KS+K       +  LS KPS++  ++ GS    FE  DV  G+ VTG+V  +D++   
Sbjct: 795  LSKSDK-----RPVVTLSNKPSLVAAAQSGSLPAKFE--DVKEGKPVTGFVRNIDDQRVF 847

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIG----KAVTGHVLSINKEKKLLRLVLRP 1236
            +  +  L     +L S  +    +E Q+    G      VTG +LS++  ++   + LR 
Sbjct: 848  VEFADGLVG--LLLKSQMK----EEMQKTVGYGLQNDSTVTGKILSVDVRQRRFLITLRD 901

Query: 1237 FQDGISDKTVD-------ISNDNMQTFIHE-----GDIVGGRISKI-LSGV--GGLVVQI 1281
                 SDK           +N+ +   + E      D   G+++   ++GV    L VQ+
Sbjct: 902  DHQAASDKATSAKASKGPATNETLVNSVDESCKSISDFTFGKLTTARITGVKETQLNVQL 961

Query: 1282 GPHLYGRVHFTELKNIC--VSD---PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
              +L+GR+  +E+ +    + D   PL  +   Q +  +++ I    R    + +S R+S
Sbjct: 962  ADNLFGRIDVSEVFDSWDHIKDRKHPLRNFKAKQNIPVRIIGI-HDARSHRFLPISHRTS 1020

Query: 1337 LDGMS--STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
               +   +  + +LS + D     L  +E L+       +V N+     ++ ++  +  +
Sbjct: 1021 KVPVFELTAKAVELSKESD-----LLSLEKLTVGSSHIAFVNNIGDNCVWVNITPNVRGR 1075

Query: 1395 VLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
            +   +L+D    +      FP+G  +  RV SV   + R+++T  TSDS     +     
Sbjct: 1076 IDFMDLADDVSLLNDVPAHFPVGSALKVRVKSVNVSANRLDLT-ATSDSTVKPTT----F 1130

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
             +L  G  + G++ +V    + + + + N+     ++E ++D+ +   TIY   + V+V 
Sbjct: 1131 KDLAPGMTLPGRVTKVSERNIMVQLSD-NVSAPVTLTEFTDDYTEANPTIYNKNDIVRVS 1189

Query: 1513 ILKVDKEKRRISLGMKSS 1530
            +L+VD   +++ L M+ S
Sbjct: 1190 VLEVDAPNKKLHLTMRPS 1207



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 149/332 (44%), Gaps = 41/332 (12%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI--DVKP----GL 278
            LSLE +  G    A+V +I D+   ++   P+  G +   +LA++  +  DV      G 
Sbjct: 1041 LSLEKLTVGSSHIAFVNNIGDNCVWVNI-TPNVRGRIDFMDLADDVSLLNDVPAHFPVGS 1099

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVT-KDLKGISIDLLVPGMMVSTRVQSILENGV 337
             L+  V+S++ +   + L++  D+  K  T KDL         PGM +  RV  + E  +
Sbjct: 1100 ALKVRVKSVNVSANRLDLTATSDSTVKPTTFKDL--------APGMTLPGRVTKVSERNI 1151

Query: 338  MLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY-LL 396
            M+      +  V +    + +   N    YN++  V   +L VD  ++ + LT+ P  +L
Sbjct: 1152 MVQLSDNVSAPVTLTEFTDDYTEAN-PTIYNKNDIVRVSVLEVDAPNKKLHLTMRPSKVL 1210

Query: 397  HNRAPPSHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEE 449
             +  P    +V +I  Q KV  V RG        GL +   S   S  A+V +SD+++  
Sbjct: 1211 SSSLPVKDPQVANIR-QVKVNDVVRGFIKNVSDKGLFV---SLGPSVTAFVRVSDLSDSY 1266

Query: 450  VRKLEKKYKEGSCVRVRILG----FRHLE-GLATGILKASAFEGLVFTHSDVKPGMVVKG 504
            ++  +  ++    V+ +I+       H++  L   +L  +    L F   D+K GMV+ G
Sbjct: 1267 IKDWKSAFEVDQLVKGKIIQVDPQLNHVQMSLKASMLDKNYVPPLTF--DDMKAGMVITG 1324

Query: 505  KVIAVDSFGA--IVQFPGGVKALCPLPHMSEF 534
            K+  V+ FG   +V     V  LC   H SE 
Sbjct: 1325 KIRKVEEFGVFIVVDNSKNVSGLC---HRSEI 1353



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 177/809 (21%), Positives = 333/809 (41%), Gaps = 91/809 (11%)

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             + P S++ G V  I      +     LTGF P + AV  Q  +  +   + Q  +S+  
Sbjct: 151  RLAPGSMILGQVTQITSRDIALALPNNLTGFVPLT-AVSDQFTERIEAL-LDQDEKSDAE 208

Query: 818  DVNSETGRITLS----LKQ---SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            D +SE   I L     L Q   +  +ST     +     +++I +    +   + +   +
Sbjct: 209  DTSSEDEDIELKNIFKLGQYLRAVVTSTGEDSAKGAQKNKKRIELSVKPQDANNRISRSD 268

Query: 871  GFIIGSVIEGKVHESNDFGVVVSFE-EHSDVYGFITHHQLAG---ATVESGSVIQAAILD 926
              +  ++++  V    D G+V+        + GF++  ++ G     +E GSV    +  
Sbjct: 269  -LVANTMVQASVVSVEDHGLVMDLGLADGSIKGFMSSKEVGGIDHTKIEKGSVFLCMVTG 327

Query: 927  VAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT-VNAIVEIVKENY 985
            ++   ++  LS     I   ++AN   +A         + D+ V  T V  +V  V    
Sbjct: 328  LSSNGKIAKLSADFQKIGNVKKANYLTEA--------PTIDVFVPGTAVEFLVSEVTTTG 379

Query: 986  L---VLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL--LLL 1040
            L   ++ L +    + +A      +Q+    ++  G+ V A ++         +L   +L
Sbjct: 380  LAGTIMGLIDATADVVHAGAG--ASQQDLTNKYKIGEKVKARIICTFPGDERRKLGVSVL 437

Query: 1041 LKAISETETSSSKRAKKKSSYDVGSLVQ-AEITEIKPLE-LRLKFGIG-FHGRIHITEVN 1097
               +S TE  S+          + S+V+ A++T+++P+  L +  G+    G  HI+ ++
Sbjct: 438  DHVLSLTERQSADAKGPLDVLPISSIVEEAKVTKVEPIRGLFMDVGVKRVPGFAHISRLS 497

Query: 1098 DDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFE 1157
            DDK + +      +K+G T  AR++  +    M     + +S++  +L      ++    
Sbjct: 498  DDKVDSLSETTGAYKLGSTHRARVVGYNPVDGM-----YIVSLEKKVL------NQPFLR 546

Query: 1158 ECDVSIGQRVTGYVYKV-----DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
              DV +G+ V G V KV      +   ++ ++  +     + ++      LQ  ++++  
Sbjct: 547  IDDVKVGEVVKGKVEKVMITARGSGAVIVNLAEGISG--LVSETHIADVHLQHPEKKYKE 604

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
            G AVT  VLS + E++ +RL L+      SD  V  +  ++Q     G+   G I K+L 
Sbjct: 605  GLAVTARVLSTDPERRQVRLTLKKTLVN-SDAPVWANYSDVQI----GEQAPGTIIKLLP 659

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
               G +VQ    L G +  +E+    + DP   +  GQ V             T H  LS
Sbjct: 660  --AGAIVQFYGDLRGFLPVSEMSEAYIKDPAEHFRIGQTV-------------TVHA-LS 703

Query: 1333 LRSSLDGMSSTNSSDLSTDV---DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
            + +  D M+ +     S +    DT G        L    IV+G V   + K   + L  
Sbjct: 704  VNAEEDKMTVSCRDPASRNAAQQDTFGS-------LQVTTIVKGVVSEKSEKNVTVELEG 756

Query: 1390 KLDAKVL-LSNLSDGYV---ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA- 1444
                 +L L +L+DG     ES  K   +G+ +   V+ +    KR  VTL    S  A 
Sbjct: 757  SAIKGILRLGHLTDGSEKKGESKIKRIRVGQTLEDLVI-LSKSDKRPVVTLSNKPSLVAA 815

Query: 1445 --SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1502
              S S      ++  G  V G ++ ++   +F+   +  LVGL   S++ E+    +   
Sbjct: 816  AQSGSLPAKFEDVKEGKPVTGFVRNIDDQRVFVEFAD-GLVGLLLKSQMKEEMQKTVGYG 874

Query: 1503 YRAGEKVKVKILKVDKEKRRISLGMKSSY 1531
             +    V  KIL VD  +RR  + ++  +
Sbjct: 875  LQNDSTVTGKILSVDVRQRRFLITLRDDH 903



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 97/184 (52%), Gaps = 13/184 (7%)

Query: 1361 KIEDLSPNMIVQGYVKNV--TSKG---CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
            +I+D+    +V+G V+ V  T++G     + L+  +   V  ++++D +++ PEK++  G
Sbjct: 546  RIDDVKVGEVVKGKVEKVMITARGSGAVIVNLAEGISGLVSETHIADVHLQHPEKKYKEG 605

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI---NNLSNLHVGDIVIGQIKRVESYG 1472
              V  RVLS +P  ++V +TLK    +T   S+     N S++ +G+   G I ++   G
Sbjct: 606  LAVTARVLSTDPERRQVRLTLK----KTLVNSDAPVWANYSDVQIGEQAPGTIIKLLPAG 661

Query: 1473 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532
              +     +L G   VSE+SE ++ +    +R G+ V V  L V+ E+ ++++  +    
Sbjct: 662  AIVQFYG-DLRGFLPVSEMSEAYIKDPAEHFRIGQTVTVHALSVNAEEDKMTVSCRDPAS 720

Query: 1533 KNDA 1536
            +N A
Sbjct: 721  RNAA 724



 Score = 62.0 bits (149), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 182/443 (41%), Gaps = 73/443 (16%)

Query: 539  PGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEA------TDRL- 587
            P + FK    +  R++G+   R    + ++H+     SK+ +    A+A      +D L 
Sbjct: 987  PLRNFKAKQNIPVRIIGIHDARSHRFLPISHRT----SKVPVFELTAKAVELSKESDLLS 1042

Query: 588  ---ITHG-----WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC--EPSSMYHVGQVVK 637
               +T G     ++  I  +  +V     V+G     +L  D     +  + + VG  +K
Sbjct: 1043 LEKLTVGSSHIAFVNNIGDNCVWVNITPNVRGRIDFMDLADDVSLLNDVPAHFPVGSALK 1102

Query: 638  CRIMSSIPASRRINLSFM----MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693
             R+ S   ++ R++L+      +KPT   +   +  G  + G V  V+   ++V  ++  
Sbjct: 1103 VRVKSVNVSANRLDLTATSDSTVKPTTFKD---LAPGMTLPGRVTKVSERNIMVQ-LSDN 1158

Query: 694  YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP 753
             S     TE   D+ E    + +  K       +L +D  +  L L+ + S + S+  LP
Sbjct: 1159 VSAPVTLTEFTDDYTEANPTIYN--KNDIVRVSVLEVDAPNKKLHLTMRPSKVLSSS-LP 1215

Query: 754  ------SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 807
                  ++   +  N VV G++ N+ + G FV     +T F   S   D    D    + 
Sbjct: 1216 VKDPQVANIRQVKVNDVVRGFIKNVSDKGLFVSLGPSVTAFVRVSDLSDSYIKDWKSAFE 1275

Query: 808  VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
            V Q V+  I+ V+ +   + +SLK        AS + ++++       +++         
Sbjct: 1276 VDQLVKGKIIQVDPQLNHVQMSLK--------ASMLDKNYVPPLTFDDMKA--------- 1318

Query: 868  WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVI 920
                   G VI GK+ +  +FGV +  +   +V G     ++A   VE        G  +
Sbjct: 1319 -------GMVITGKIRKVEEFGVFIVVDNSKNVSGLCHRSEIADQKVEDVTKLYSEGDAV 1371

Query: 921  QAAILDVAKAERLVDLSLKTVFI 943
            +A +L V K +R V+  LK  ++
Sbjct: 1372 KAVVLKVDKEKRKVNFGLKASYL 1394


>gi|170571773|ref|XP_001891858.1| S1 RNA binding domain containing protein [Brugia malayi]
 gi|158603388|gb|EDP39328.1| S1 RNA binding domain containing protein [Brugia malayi]
          Length = 1795

 Score =  215 bits (548), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/277 (37%), Positives = 181/277 (65%), Gaps = 5/277 (1%)

Query: 1647 AAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1705
            A E ++LE D  P   ++F+RLV  SPNSS +WI+Y+ F L   D++KAR++AERAL  I
Sbjct: 1512 ARERKILEADWIPDNTNDFDRLVTGSPNSSILWIRYITFFLEQNDIDKARAVAERALSVI 1571

Query: 1706 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1765
            N REE+E  N+W AY NLE  +G    E++  VF  A++  DP K++  ++ +Y++ E+ 
Sbjct: 1572 NFREEDEIFNVWTAYLNLEGNFGT--SESLKAVFANAVRNTDPLKMYKQMVKIYQKLEKI 1629

Query: 1766 KLADELLYKMIKKFKHS-CKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQ 1823
            +  D+LL +M+K+F+H    VW    Q LL+ ++ +  + ++++A+  L R  H+  +S+
Sbjct: 1630 EEIDDLLEEMLKRFRHDDLDVWFIYGQHLLETKRPDKARNLMKKAINCLQRKHHVTILSR 1689

Query: 1824 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1883
             A LEFK G  ++ +++FE IL+ YPK+TD+W++Y+D  I+   ++  R L ER  +L L
Sbjct: 1690 FAQLEFKFGDIEQSKTIFESILNSYPKKTDVWTVYIDXLIKAEKIEDARQLLERVTALKL 1749

Query: 1884 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
               K++  FKK+++ E+  G+E++   VK++A++Y++
Sbjct: 1750 STHKIRLFFKKWVDLEQKHGDEKQQNNVKERAVQYLQ 1786



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 218/869 (25%), Positives = 373/869 (42%), Gaps = 105/869 (12%)

Query: 122 YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN 181
           +  +IT   ++ GM   GVV ++ E ++++    G+       +    +L  E   N   
Sbjct: 46  WNQRITPNFLTEGMLGLGVVMKIREAEILLECSDGVVVKVPVQNFGSLML--ETLRNSSI 103

Query: 182 LLPTIFHVGQLVSCIVLQLDDDKKEIGKRK----IWLSLRLSLLYKGLSLETVQEGMVLT 237
            L  +F VGQ+++  V++  +      KRK      +S    ++   L+   + +G+VL 
Sbjct: 104 TLEDVFRVGQMLAFKVIKGRETHDTQKKRKKASYPIVSCDPLIVNFHLNPGALIDGLVLN 163

Query: 238 AYVKSIEDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTR 291
             V S+ED G I+  GL S    GFL   +L     + S I  +P LL      S ++  
Sbjct: 164 GVVGSVEDKGVIIDLGLQSVELKGFLAERHLPSTFPKESLIKGQPLLLRIQNESSSNKKA 223

Query: 292 KVVYLSSDPD--TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 349
           +V+ LS+ P+   +   V K LK   ++ L+PG ++         +GV ++      G V
Sbjct: 224 RVISLSAVPEMECLDXAVVKKLK---LNDLMPGTLLLVNPLQPTHSGVYVNIGNDIKGYV 280

Query: 350 DIFHLQNTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPS 403
              HL        ++ND Y   K     ++F    S  + L  +P +     L  R    
Sbjct: 281 SRQHL-----PPRYRNDPYKCLKSFKTIVMFCQQNSNLLTLNGHPDIIAVSKLVKRTNFE 335

Query: 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
           +  +GDI  + +V  VD+   +  D+            ++  A +   K   +YK+G+  
Sbjct: 336 NXHIGDII-ECRVSSVDKNGNVNFDLVHEDERNS---LVAAFARKTKLKDSVEYKKGTVH 391

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
           + R+L F+ +E +     + +     + +  D  PG+ V  K+ +V   G  V+    + 
Sbjct: 392 QARVLSFKMVERILIVATQKNILAQKMVSIKDAVPGVKVTAKIESVLDKGLFVKIYNSIP 451

Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYA 581
              P  H+S+  I +  K F VG EL  RVL V    +R+ +T+K++L+ SK  I+ +YA
Sbjct: 452 GFIPKIHLSDKLITRIEKHFVVGDELNCRVLNVNKLKERLILTNKQSLISSKDTIIKNYA 511

Query: 582 EATDRLITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSMYHVGQVVK 637
           E T  +IT G+I  I +H   G  + FY G  GF  P+    L    +      VG  V+
Sbjct: 512 EVTTNVITTGYI--ISQHSSGGLVIGFYGGTCGFMFPKEAERLGTNVK------VGLTVR 563

Query: 638 CRIMSSIPASRRINLSFM-----------MKPTRVSEDDLVKLGSLVSGVV---DVVTPN 683
            R++S  P  +R+ ++              +P  +  ++ +   ++V  V    D +T N
Sbjct: 564 VRVVSVDPQRKRLLVALANTTNGGTGIARAQPFLMDRENPLSFSAVVVNVSSNGDNLTRN 623

Query: 684 AVVVYVIAKGYS-----KGTIPTEHLADHLE---HATVMKSVIKPGYEFDQLLVLDNESS 735
            V+   +  G       K  IP E L+D+L+   H+  +   I PG    ++ VL + + 
Sbjct: 624 EVLNVSVRLGKKLGGKVKAFIPKELLSDYLDLPFHS--LNESIAPGSVLPKVTVLGDIAG 681

Query: 736 NLLLSAKYSLINSAQQLPSDASHIHPNSVVHG-YVC-NII----ETGCFVRFLG--RLTG 787
           NL +++K  +I+    L   A       +  G  VC NII    E G FV   G   LTG
Sbjct: 682 NLKVTSKRFIID---WLEKHARITGIQDLTKGDLVCGNIIQKHKEMGYFVELAGGSALTG 738

Query: 788 FA----PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS-- 841
            A    P    V  Q         +GQ+V + +  V+ E  R  L L    C    A   
Sbjct: 739 PARFIRPMMLPVSMQELQ------IGQTVVARVSSVDLERKRFALILDTHLCVPPGAKPD 792

Query: 842 -FMQE--HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
            F     H+ +EE    + ++  N    K      IG  I  KV E ++  VVV   +++
Sbjct: 793 YFAPSMIHYTVEELNWFIANNASNSQVPK------IGECIHVKVIEVSERNVVVQHGDNT 846

Query: 899 DVYGFITHHQLAGATVESGSVIQAAILDV 927
           ++ G   +   +   ++ GS  +A +LD+
Sbjct: 847 NLKGCTIN---STNILQKGSYAKALVLDI 872



 Score = 45.4 bits (106), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 6/183 (3%)

Query: 1348 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1407
            ++T  +   + +  I+D  P + V   +++V  KG F+ +   +   +   +LSD  +  
Sbjct: 407  VATQKNILAQKMVSIKDAVPGVKVTAKIESVLDKGLFVKIYNSIPGFIPKIHLSDKLITR 466

Query: 1408 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1467
             EK F +G  +  RVL+V  L +R+ +T K S   ++  + I N + +    I  G I  
Sbjct: 467  IEKHFVVGDELNCRVLNVNKLKERLILTNKQS-LISSKDTIIKNYAEVTTNVITTGYIIS 525

Query: 1468 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
              S G  +        G     E      + + T  + G  V+V+++ VD +++R+ + +
Sbjct: 526  QHSSGGLVIGFYGGTCGFMFPKE-----AERLGTNVKVGLTVRVRVVSVDPQRKRLLVAL 580

Query: 1528 KSS 1530
             ++
Sbjct: 581  ANT 583


>gi|401409816|ref|XP_003884356.1| hypothetical protein NCLIV_047560 [Neospora caninum Liverpool]
 gi|325118774|emb|CBZ54325.1| hypothetical protein NCLIV_047560 [Neospora caninum Liverpool]
          Length = 3075

 Score =  214 bits (546), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 155/522 (29%), Positives = 259/522 (49%), Gaps = 61/522 (11%)

Query: 1446 QSEINNLSNLHVGDIVIGQIKRVESY--GLFITI------------ENTNLVGLCHVSEL 1491
            Q +   L  L  GD+V G++ +++      +I++            E  +L+ L      
Sbjct: 2560 QEKRARLQRLQKGDLVRGRVTKIDRAQGKAWISLDAEVFDSEEGASEEEDLLALAGEESS 2619

Query: 1492 SED--HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1549
             ED   +D      +  + ++V      ++K+    G K    ++++       +  +DE
Sbjct: 2620 DEDMTGLDRPHATRKNRQAMEVDFEDEGRKKKHREAG-KQEGSEDESPGAVDGGDSSADE 2678

Query: 1550 AIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMD 1609
              E  GS++        S    +    + +GG    A  ES   +   E  LD  QPD++
Sbjct: 2679 GEEAGGSWSAGISASAHSWGWSETGPSANEGG----ANGESDVLMSDSEGELDTTQPDLN 2734

Query: 1610 NGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVR 1669
            +    ++  +  A+   E+  R  +++ +   +   R+  E       PR+P++FERLV 
Sbjct: 2735 DADEDDEKKSKAARRRHEEEARRQEEETRRLEDNAGRSWMED------PRSPEDFERLVL 2788

Query: 1670 SSPNSSFVWIK--------------------YMAFMLSMADVEKARSIAERALQTINIRE 1709
             + NS+ VWI+                    YMA+ L + +++ AR +AERA+Q IN RE
Sbjct: 2789 VNGNSAAVWIRQVEISGDSAHAESRRRQAMNYMAYYLKLNELQMARQVAERAIQHINYRE 2848

Query: 1710 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1769
            E E+ ++W+AY NLE  YG+     V ++F+RA+QY D KK+H  +  +YE+  Q   A 
Sbjct: 2849 EQERSSVWIAYLNLECVYGD----RVDEIFKRAVQYNDSKKIHYQMTFIYEKARQLDKAR 2904

Query: 1770 ELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFISQTAIL 1827
            ++  K  +KF  S K+W+R +  L         A  ++ +AL  LPR KHI+F++  A L
Sbjct: 2905 QMCEKCCEKFPESQKMWVRHLTLLYTALDAASAARDLMLQALFRLPRRKHIEFVATCARL 2964

Query: 1828 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--------GDVDLIRGLFERAI 1879
            E+K+G  +RG++ FE +L+E+PKRTD+WS Y+D  I           ++  IR LFER  
Sbjct: 2965 EYKHGSKERGQTYFEKLLAEHPKRTDIWSQYVDAHIAAHTPPRCVPANLQSIRVLFERTT 3024

Query: 1880 SLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            SL L  +KMKF F ++L +EK  G  E    V+ KA ++V+S
Sbjct: 3025 SLQLKLRKMKFFFTRWLGFEKQHGTAETQARVRAKARQFVQS 3066



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 153/365 (41%), Gaps = 111/365 (30%)

Query: 1289 VHFTELKNICVSDPLSGYD--EGQFVKCKVLEISR----------TVRGTFHVELSLRSS 1336
            VH  E+ +  VSDP+   D   GQ VK K+L I++            R    +E SLR S
Sbjct: 2264 VHVAEVLDDWVSDPVKRLDLKVGQAVKVKILPIAQRGENGRTDKTASRSGLPLEASLRLS 2323

Query: 1337 L----DGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
                 +G+ S    S DL +D         + E+L     V G V +    G F+ +SR 
Sbjct: 2324 QVEAKEGLRSDALRSGDLRSDA-------LRFENLEVGQEVSGLVVSSGQAGVFVAVSRS 2376

Query: 1391 LDAKVLLSNL--SDGYVESPEKE--------------------------FPIGKLVAG-R 1421
            L  ++ L  L   +    +P K                           FP+G+LV   R
Sbjct: 2377 LTLRIKLQKLLSENAGATTPAKTRGTEAAESPAGVVASRLVTGDEAKALFPVGRLVQNIR 2436

Query: 1422 VLSVEPLSKRVEVTLK------------------TSDSRTASQ----------------- 1446
            +++++P ++R+E +L+                  T +S  A Q                 
Sbjct: 2437 IVALDPETRRIEGSLRPSSVKKRTDGEGADGTGETGESAKAHQKDEKARPGFENLTARAD 2496

Query: 1447 SEINNLSN-----LHVGDIVIGQIKRVESYGLFITIEN--------TNLVGLCHVSEL-S 1492
            SE    +N     L+VGD++ G+++ +E++G+F+ +E+         +L  LCHVSE+  
Sbjct: 2497 SEAKRTANRLLEKLNVGDVIDGRVRGLETFGVFVRLEDGEDGDQDRISLDVLCHVSEMGG 2556

Query: 1493 EDHVDNIETIYR--AGEKVKVKILKVDKEKRRISLGMKSSYFKN------DADNLQMSSE 1544
             D  +    + R   G+ V+ ++ K+D+ + +  + + +  F +      + D L ++ E
Sbjct: 2557 NDWQEKRARLQRLQKGDLVRGRVTKIDRAQGKAWISLDAEVFDSEEGASEEEDLLALAGE 2616

Query: 1545 EESDE 1549
            E SDE
Sbjct: 2617 ESSDE 2621



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 87/191 (45%), Gaps = 48/191 (25%)

Query: 119 LPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGL------------------ 160
           L R    +   ++S G  L GVVAE++  +L++ LP G+ G                   
Sbjct: 130 LERLVRPVEAGDVSPGSLLLGVVAEIHANELIVHLPYGMMGYVPRTQAQEATPGSTPGAS 189

Query: 161 ---ARA-ADALDPILDNEIEAN------------EDNLLP-TIFH-VGQLVSCIVLQLDD 202
               RA ++A D   D   EAN              N+LP T  H VGQ+V  +VL    
Sbjct: 190 ASYGRAVSEAEDFEGDATWEANAARGRGSKAAGGHPNMLPLTRSHFVGQIVQTVVLGGGR 249

Query: 203 DKKEI-----GKRK-------IWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
           + + +       R+       + LSLR SL   GLSL+ +   MV+ A + ++E+HGY+L
Sbjct: 250 EGRNVEGEGDAHRRSPQSSSVLLLSLRPSLFNAGLSLDALAPSMVVPASIAAVEEHGYML 309

Query: 251 HFGLPSFTGFL 261
            FG+   +GFL
Sbjct: 310 SFGVHELSGFL 320


>gi|323508229|emb|CBQ68100.1| related to RRP5-processing of pre-ribosomal RNA [Sporisorium
            reilianum SRZ2]
          Length = 1557

 Score =  214 bits (545), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 118/292 (40%), Positives = 181/292 (61%), Gaps = 7/292 (2%)

Query: 1634 KKKEKEEREQEIRAAEERL---LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD 1690
            ++KEK + +    A E+ L   L   AP +  +FERL+  SPNSSF+WI++M+F L ++D
Sbjct: 1250 QRKEKAKAKSRKSALEDDLTADLASKAPESATDFERLLLGSPNSSFLWIQFMSFALQLSD 1309

Query: 1691 VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1750
            V++AR+IA RAL+ IN REE E++N+W+A  NLEN YG+  ++ +   F+ A+Q  D   
Sbjct: 1310 VDQARTIARRALKVINYREEQERMNVWIALLNLENTYGS--DDTLDATFREAVQANDGFT 1367

Query: 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQ-RAL 1809
            ++L L+G+ E   +   ADE   K   K+    + W+   +  L+ ++      +  RA+
Sbjct: 1368 MYLKLIGILEGAGKLDAADETWVKAKGKYSTQPEFWIEYARFFLRTRRADAARALLPRAM 1427

Query: 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1869
             +L +  H + I+  AI EFK G A+RGR++FEG++  YPKR DLW  YLDQE RL +  
Sbjct: 1428 QALDKRAHTQTITAFAINEFKLGDAERGRTIFEGLVDSYPKRLDLWWQYLDQESRLPENQ 1487

Query: 1870 L-IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
              +R LFER ++L L  KK K L KK+LEYEK+ G+ +  + V  +A E+V+
Sbjct: 1488 AQVRNLFERTLTLKLTAKKGKSLLKKWLEYEKAHGDAKSQQKVLNRAKEFVD 1539



 Score =  145 bits (367), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 147/560 (26%), Positives = 255/560 (45%), Gaps = 53/560 (9%)

Query: 183 LPTIFHVGQLVSCIVLQLDDDKKEIGK------------RKIWLSLRLSLLYKGLSLETV 230
           L  +FHVGQ +   V+Q+       G+            R++ LSL   L+  G+S+  +
Sbjct: 236 LRELFHVGQWLVASVVQVRSGDVAKGRPTREGGEYEKESRRVELSLAPHLVNAGVSVSDL 295

Query: 231 QEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE--------NSGIDVKPGLLLQG 282
             G  L+A + S+EDHGY+L  GL   +GF+P  + A+         +G  ++ G ++  
Sbjct: 296 DTGATLSAAISSVEDHGYMLDAGLAELSGFVPFTDAAKLPASFHAGKNGKSLQVGSVVFA 355

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
            +  I   ++    + DP TV     K     SI  ++PG +    + + L  G+ +   
Sbjct: 356 KITRIPENKRSFDATLDPKTVRTSPIK--HAPSITAILPGTLTKVLITASLPTGLNVKLF 413

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTS-----------RAVGL 389
             F  T+D FHL       +  + Y +  K  AR+L+  + P S           R  GL
Sbjct: 414 GMFDATIDRFHLPELPEGKDIPDVYKEGSKHVARVLWDLLAPPSAALQGDNPDHERKFGL 473

Query: 390 TLNPYLLHNRAPPS-------HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 442
           +L P +L   AP +       H        +  VV+     GL++ +  T +    +V I
Sbjct: 474 SLAPQVLALEAPVAKDDQLLQHAFPIGAALKVTVVQTINDWGLIVSVHDTDLR--GFVHI 531

Query: 443 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           S V+++ V  L      + +GS  + R++G    +      LKAS  E      S+V+ G
Sbjct: 532 SQVSDDHVVALPPSSGPFAKGSVHKARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVG 591

Query: 500 MVVKGKVIAVDSFGAI-VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
            VV   +I +    AI +Q  G V  +    H ++ ++ +P K+FK G ++  RV+ V  
Sbjct: 592 EVVNASIIKLGLPNAIFLQLQGHVDGVVFANHFADVKLTQPEKRFKPGLQVKARVMDVDP 651

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
              RI +T KK+LVKS L I++S  +A   ++T+  + +++ +   V  + G++   P  
Sbjct: 652 NRNRIVLTLKKSLVKSDLPIVASMQDARVGVVTNATVFRVQTNSLIVSLFGGLRALVPGR 711

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE--DDLVKLGSLV 673
           E+  D   +  S +  G+VVK RI      ++R+  S     P  +++   D V++G  V
Sbjct: 712 EVSEDDFNDVKSGFGEGKVVKMRITEVDYENQRLVGSIKQASPEYLAKLNVDAVEVGETV 771

Query: 674 SGVVDVVTPNAVVVYVIAKG 693
           +G V  V    VV+ ++  G
Sbjct: 772 TGKVAAVHKEVVVLTLVPSG 791



 Score = 57.8 bits (138), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 128/609 (21%), Positives = 238/609 (39%), Gaps = 66/609 (10%)

Query: 375  ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
            AR++   PT R + L+L   +L  +              + ++++     + L +     
Sbjct: 557  ARVVGHSPTDRTLQLSLKASVLERKFMRVSEVEVGEVVNASIIKLGLPNAIFLQLQG--- 613

Query: 435  STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVF 491
                 V  +  A+ ++ + EK++K G  V+ R++            LK S  +    +V 
Sbjct: 614  HVDGVVFANHFADVKLTQPEKRFKPGLQVKARVMDVDPNRNRIVLTLKKSLVKSDLPIVA 673

Query: 492  THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE--FEIVKPGKKFKVGAEL 549
            +  D + G+V    V  V +   IV   GG++AL P   +SE  F  VK G  F  G  +
Sbjct: 674  SMQDARVGVVTNATVFRVQTNSLIVSLFGGLRALVPGREVSEDDFNDVKSG--FGEGKVV 731

Query: 550  VFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY- 606
              R+  V  +++R+ V   K      LA L+  A      +T G +  + K    +    
Sbjct: 732  KMRITEVDYENQRL-VGSIKQASPEYLAKLNVDAVEVGETVT-GKVAAVHKEVVVLTLVP 789

Query: 607  NGVQGFAPRSELGLDPGCEPSSMYHV--------GQVVKCR--------IMSSIPASRRI 650
            +GV+     + L       P ++           G VV  +        +   +  S++ 
Sbjct: 790  SGVRALLSLAVLAAMRSTTPEALLETLEEDQEIDGLVVSVKNPAKGIVIVADKVRESKKA 849

Query: 651  NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLE 709
            N     +    +    VK G++V G V +   +  +  V+A G  ++ T+    LAD   
Sbjct: 850  N-----EGASSTTSGQVKQGAVVQGRV-IQKNDKYLDCVVALGTATRATLQMTDLADDFS 903

Query: 710  HATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLIN---SAQQLPSDASHIH---PN 762
                + S   PG      +V L     + ++S + S +N   SAQ +  + + I      
Sbjct: 904  ANITLPS---PGQTLQCYIVSLKPNGKSAVISTRPSRVNPSTSAQIVDPEITSISDLIKG 960

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
              + G+V  I   G FV    +L       +  D    D    + VGQ V   ++DVN+ 
Sbjct: 961  QKIRGFVKAITNVGLFVNVGRKLDARVQVRELFDEFVRDWKTRFRVGQLVEGTVMDVNAH 1020

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
            +  + LSLK +  S    +  +            ++  H+    K +  F +G  ++G V
Sbjct: 1021 SNEVELSLKSTPGSIKPRAEREAE----------RAQAHDAKRPKRLTDFSVGDKVKGFV 1070

Query: 883  HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVD 935
                DFGV V   + ++V G    ++L+    +        G  ++A +L + + ++ + 
Sbjct: 1071 KNVIDFGVFVQI-DGTNVSGLAHMNELSDGKADEALKAFRVGDKVRAIVLRINEEKKKIS 1129

Query: 936  LSLKTVFID 944
              LK  + D
Sbjct: 1130 FGLKPSYFD 1138


>gi|385305107|gb|EIF49101.1| part of small ribosomal subunit processosome (contains u3 snorna)
            [Dekkera bruxellensis AWRI1499]
          Length = 344

 Score =  213 bits (541), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/266 (40%), Positives = 170/266 (63%), Gaps = 4/266 (1%)

Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1716
            AP +  +FERL+  +PNSS +WI+YM+F L + ++EKAR I +RAL+TIN REE+EK+N+
Sbjct: 75   APESVSDFERLLLGNPNSSIMWIQYMSFQLQLGEIEKARKIGDRALKTINYREESEKMNV 134

Query: 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
            W+A  NLEN +G   E+ +   F RA QY D   +H  L  +Y  +++ + AD +   + 
Sbjct: 135  WIALLNLENMFGT--EDTLKDTFTRACQYMDAYTMHRKLASIYISSDKFEEADSMFKVIC 192

Query: 1777 KKFKHS-CKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
            KKF +    VW+   + L+++ + +    V+ +AL  L +  H++ + + A LEF  G  
Sbjct: 193  KKFGYDHVIVWVAYGRFLIERSKPDEAHQVLAKALQVLTKRSHVEVVRKFAQLEFSEGDP 252

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
            ++GRS+FEG+LS+ PKR D+W++Y+DQEI+ G  + +  LFER  +  L  K+ KF F K
Sbjct: 253  EQGRSLFEGLLSDVPKRLDIWNVYIDQEIKNGXKNKVEDLFERVSARKLTKKQAKFFFGK 312

Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYVE 1920
            +L YE   G+E+  +YVK KA EY +
Sbjct: 313  WLSYEGKNGDEKASDYVKAKAAEYAQ 338


>gi|409083836|gb|EKM84193.1| hypothetical protein AGABI1DRAFT_117625 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1480

 Score =  212 bits (540), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 267/1055 (25%), Positives = 449/1055 (42%), Gaps = 130/1055 (12%)

Query: 1   MAASSRK-SQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGG 59
           MAA  R  ++  SS+   K     K++ K  + + + A+  ++ A         FPRGGG
Sbjct: 1   MAAQKRPLNETTSSRKSKKLKTDEKSKPKEKEVEKSTALTLEEAA---------FPRGGG 51

Query: 60  HSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKK--KKTERKANETVDDLGSLFGDGISG 117
            S T  E   I AE   E    +  L K+++++K  KK  RK  +      S  GD    
Sbjct: 52  TSFTPFEVKTIRAEAVKE---ADEALFKESREEKGSKKNARKIKKQNISNVSEKGD---- 104

Query: 118 KLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL--- 171
             P     +  K    GMK+ G V  +    L+I LP  L G   + + +     +L   
Sbjct: 105 --PVRIEHLNYKRAFVGMKILGQVVSIIPLGLIISLPNQLYGHVPITQISSQFTTVLERF 162

Query: 172 DNEIEANEDNL-------------LPTIFHVGQLVSCIVLQLD----DDKKEIGK----- 209
           DN  E +++++             L  +FHVGQ V  IV  +      D   +GK     
Sbjct: 163 DNRDEGSDEDIAMEDEDEDTQTPDLYGMFHVGQYVRAIVTNVHAAGVSDIMGVGKLRDDL 222

Query: 210 ----RKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNN 265
               R++ LSL    +  G+    ++ G  ++A VKS+EDHGY L  G+   +GFL   +
Sbjct: 223 AKASRRMELSLVPEKVNAGVQKTDLKSGFTISAAVKSLEDHGYNLDLGVQDVSGFLSFED 282

Query: 266 LAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS----IDLLVP 321
           +  +S   +  G ++   V  I    +V  ++ D          D+  +S    ++ ++P
Sbjct: 283 VGRDSP-KLHVGHVINVSVSKISANNRVCNVTMDFSLSFSSNHTDIFQLSEISSVNSVLP 341

Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-- 379
           G +V   + SI   G+ L  L +F GTVD FHL    P       +    KV ARIL+  
Sbjct: 342 GTLVQCLITSINPEGINLQVLGFFDGTVDQFHLPKNPP-----KPFKVGTKVKARILYNY 396

Query: 380 -VDPTSRAVGLT-----LNPYLLHNRAPPSHVK----VGDIYDQSKVVRVDRGLGLLLDI 429
              P   ++ L+     L PY++      S ++    VG + D  KV RV++  GL++ +
Sbjct: 397 SASPPKFSLALSEHVIRLRPYMVSIGEDSSLLEEAYPVGTVLDAVKVSRVEKERGLIVGL 456

Query: 430 PSTPVSTPAYVTISDVAEEEVRKLEK--KYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
                    +V IS ++++ V  L     +K G+  R R+ G    +GL    LK S  E
Sbjct: 457 DG---QLEGFVHISHLSDDHVPSLTSIGPWKPGTIHRARVTGHFTFDGLLQLSLKRSVLE 513

Query: 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
                 +DV  G  V G +  +      V     +  +    H ++  +  P K+FKVG 
Sbjct: 514 QKYIQVTDVGVGQTVTGTIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGT 573

Query: 548 ELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF 605
            +  RVL V ++  RI++T KKTL+ S+L ILS+  +     + H  + K+      V F
Sbjct: 574 SIKCRVLVVDAEKNRISLTAKKTLLNSQLPILSNIEDVQPEDLAHAVVFKVHDKHLLVEF 633

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED- 664
           YN ++   P  E+   P    S  + VG+VVK RI+S     RRI  S        S   
Sbjct: 634 YNNLKAVIPLKEVSETPVNSLSEAFSVGKVVKVRIISVQQNQRRIVASIRRATASGSATP 693

Query: 665 DL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA-TVMKSVIKPG 721
           D+  V++G++V GVV  +  +  +++ +     K     ++LA+H       +KS +K G
Sbjct: 694 DISKVEVGNIVEGVVAEIHKDNAILF-LQPSNVKALHSLKNLANHRAIGLPQLKSELKVG 752

Query: 722 YEFDQLLVLDNESSN---LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
               +L+V+         ++ +A  S +    ++      IH   +V G V      G  
Sbjct: 753 ERLYELVVVTRNLEKGFVIVANAPKSKLTLPSKIALSIDTIHIGQIVSGRVIRHTRLGAL 812

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V+    + G    +   D     LS    V   V++ I+ V+ E  R+TLS +QS     
Sbjct: 813 VKVTSHIGGIIHPTDVSDNFDNGLSYP-AVDSLVKAAIVKVDEEKRRVTLSTRQS----- 866

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
                        ++   Q+++    E+  +   I+G+ + G V    D G+ V+   + 
Sbjct: 867 -------------RLRPDQTTQVVDKEINDISDLILGASVRGFVKSIADHGLFVTVGRYI 913

Query: 899 DVY--------GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREAN 950
           D           FI   +      +   +++  IL V    + V+L+        FR  +
Sbjct: 914 DARVQIRELFDDFIKDWK---PRFQVNQLVKGRILSVDIENQKVELT--------FRSGD 962

Query: 951 SNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENY 985
            + + ++ + KR  S DL   + V+ I++ + ENY
Sbjct: 963 LSARQREAQTKRSPS-DLHEGEKVDGIIKRI-ENY 995



 Score =  140 bits (353), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 157/595 (26%), Positives = 279/595 (46%), Gaps = 61/595 (10%)

Query: 967  DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
            D+GV QTV   ++ + ++ + ++L E    + + +       K P K+F  G S+   V+
Sbjct: 521  DVGVGQTVTGTIKKLTDSAMFVTLSENIDGVVWPNHYADIILKHPAKRFKVGTSIKCRVL 580

Query: 1027 ALPS-----SSTAGRLLL--LLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLEL 1079
             + +     S TA + LL   L  +S  E    +            L  A + ++    L
Sbjct: 581  VVDAEKNRISLTAKKTLLNSQLPILSNIEDVQPE-----------DLAHAVVFKVHDKHL 629

Query: 1080 RLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1139
             ++F       I + EV++   N +   FS   +G+ V  RII+             +  
Sbjct: 630  LVEFYNNLKAVIPLKEVSETPVNSLSEAFS---VGKVVKVRIISVQQN---------QRR 677

Query: 1140 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS-RHLKAQLFILDSA- 1197
            I  S+   +  GS    +   V +G  V G V ++  + A+L +   ++KA   + + A 
Sbjct: 678  IVASIRRATASGSATP-DISKVEVGNIVEGVVAEIHKDNAILFLQPSNVKALHSLKNLAN 736

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVL-SINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
            +    L + +    +G+ +   V+ + N EK  + +   P         + +S D     
Sbjct: 737  HRAIGLPQLKSELKVGERLYELVVVTRNLEKGFVIVANAPKSKLTLPSKIALSIDT---- 792

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            IH G IV GR+  I     G +V++  H+ G +H T++ +    + LS       VK  +
Sbjct: 793  IHIGQIVSGRV--IRHTRLGALVKVTSHIGGIIHPTDVSD-NFDNGLSYPAVDSLVKAAI 849

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            +++    R         R +L    S    D +T V    K +  I DL     V+G+VK
Sbjct: 850  VKVDEEKR---------RVTLSTRQSRLRPDQTTQV--VDKEINDISDLILGASVRGFVK 898

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            ++   G F+ + R +DA+V +  L D +++  +  F + +LV GR+LSV+  +++VE+T 
Sbjct: 899  SIADHGLFVTVGRYIDARVQIRELFDDFIKDWKPRFQVNQLVKGRILSVDIENQKVELTF 958

Query: 1437 KTSD--SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
            ++ D  +R        + S+LH G+ V G IKR+E+YGLFI IE T + GLCH SELS++
Sbjct: 959  RSGDLSARQREAQTKRSPSDLHEGEKVDGIIKRIENYGLFIQIEGTKMSGLCHKSELSDN 1018

Query: 1495 HVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
               ++      +R G++VK  ++++D  K+RIS  +K S F    ++L  S+E+E
Sbjct: 1019 KDADVSVALQNFRQGDRVKAVVIEID--KKRISFSLKPSLFVE--EDLDGSAEDE 1069


>gi|84999534|ref|XP_954488.1| pre-rRNA processing protein [Theileria annulata]
 gi|65305486|emb|CAI73811.1| pre-rRNA processing protein, putative [Theileria annulata]
          Length = 297

 Score =  212 bits (540), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 120/293 (40%), Positives = 180/293 (61%), Gaps = 21/293 (7%)

Query: 1644 EIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1700
            +IR  E+R+ +K+  R P+   +FERLV ++  SS VWI YMAF ++  D+E AR   +R
Sbjct: 2    KIRELEDRIADKEWMRNPNSVMDFERLVVTNSRSSAVWIAYMAFYINSGDIEMARKTVKR 61

Query: 1701 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1760
             L+ I+ RE  EK+N+WVAY N+E  YG    + V+++F++A+QY D K +HL ++ ++ 
Sbjct: 62   GLKAIDFREMAEKMNLWVAYLNMECIYG----DKVMEIFKQAIQYNDSKSIHLKMINIFV 117

Query: 1761 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQR---ALLSLPRHKH 1817
               Q + A E+  K IKKF  S KVWL  + RLL +  +  +A  Q     +  +P+ K 
Sbjct: 118  NNNQLEKAKEICEKAIKKFHKSKKVWLSYL-RLLYENMKDFEAGRQLHKVCITRIPQRKR 176

Query: 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG----------D 1867
            I   S TA+LE+K+G  + G+  FE IL E PKR D+W+ YL   I+L            
Sbjct: 177  ILITSSTALLEYKHGSPEMGKMYFENILLENPKRMDIWNQYLTAHIKLNMDESKTQKSEG 236

Query: 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            +  +R LF+RAI+L L PKKMK +F K+LE+E + G E+  E V++KA++YVE
Sbjct: 237  LKNVRNLFDRAITLDLKPKKMKIIFSKWLEFECAYGTEKSKESVQKKALKYVE 289


>gi|312088778|ref|XP_003145991.1| hypothetical protein LOAG_10419 [Loa loa]
          Length = 481

 Score =  212 bits (540), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 191/302 (63%), Gaps = 5/302 (1%)

Query: 1622 AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIK 1680
            A  I+E+N    K++ + E E+++   E ++LE +  P   ++F+RLV  +PNSS +WI+
Sbjct: 173  ADNIEEQNRPKTKEELQIEEEKKLINRERKILEANWIPDNTNDFDRLVAGTPNSSILWIR 232

Query: 1681 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1740
            Y+ F L   DVEKAR++A+RAL  IN REE+E  N+W AY NLE  +G    E++  VF 
Sbjct: 233  YITFFLEQNDVEKARAVADRALSVINFREEDEIFNVWTAYLNLEGNFGT--SESLKAVFD 290

Query: 1741 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS-CKVWLRRVQRLLKQQQ- 1798
             A++  D  K++  ++ +Y+   + +  D+LL +M+K+F+H    VW    Q LL+ ++ 
Sbjct: 291  NAIKNTDALKMYKQMVKIYQNLGKIQELDDLLDEMLKRFRHDDLDVWFIYGQHLLETKRP 350

Query: 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1858
            +  + ++++A+  L R  H+  +S+ A LEFK G  ++ +++FE IL+ YPK+TD+W++Y
Sbjct: 351  DKARDLMKKAINCLSRKHHVTILSRFAQLEFKFGDMEQSKTIFENILNSYPKKTDVWTVY 410

Query: 1859 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
            +D  I++G  +  R L ER  +L L   K++  FKK++  E+  G+EE+   VK++A+ Y
Sbjct: 411  IDLLIKVGKFEDARQLLERVTALKLSTHKIRLFFKKWVGLEQMHGDEEQQNNVKERALHY 470

Query: 1919 VE 1920
            ++
Sbjct: 471  LQ 472


>gi|307177534|gb|EFN66645.1| Protein RRP5-like protein [Camponotus floridanus]
          Length = 1398

 Score =  212 bits (540), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/277 (38%), Positives = 172/277 (62%), Gaps = 3/277 (1%)

Query: 1645 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1704
            IR  EE L   + P + D+F++LV SSP+SS VW++YMA+ L   +++KAR++ +RA++T
Sbjct: 1118 IRQREEALASNEIPNSIDQFDKLVLSSPDSSLVWLQYMAYHLQATEIDKARAVVKRAIKT 1177

Query: 1705 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1764
            IN REENE+LN+W A+ NLE+ +G    E++  VF+ A+Q  D  K++  +L ++    +
Sbjct: 1178 INFREENERLNVWNAWLNLESRFGTL--ESLNDVFREAVQNNDAFKIYTYMLTVHADASR 1235

Query: 1765 NKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQ 1823
                 +L+  +I KFK   + W+      LK   +E  + ++QRAL SLP  +H+  + +
Sbjct: 1236 MIELQKLVATIIGKFKQDPETWISCGAAFLKIGLKEKSRYIMQRALQSLPASQHVNLLVR 1295

Query: 1824 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1883
             A LE K G  +R +++FE IL  YPKR D+WS Y+D  I+  ++D+ R + ERA   +L
Sbjct: 1296 FANLENKLGDKERAQTLFENILCSYPKRVDVWSCYIDCLIKSKNIDIARKVLERACFQTL 1355

Query: 1884 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            P +KMK LF K+  +E+  G  E +  + Q A +YVE
Sbjct: 1356 PVRKMKTLFTKFKNFEEKYGTPETVARIVQMAADYVE 1392



 Score =  158 bits (399), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 153/618 (24%), Positives = 292/618 (47%), Gaps = 56/618 (9%)

Query: 128 LKNIS--AGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN-----EIEA 177
           L NI+   GM + G ++ V+E DL+I +PGG+ G   +   +++   +L N      I++
Sbjct: 56  LSNITLREGMTVLGRISRVSEYDLIISIPGGILGHVEITNLSESYTNLLQNIISTKAIQS 115

Query: 178 NEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
           NE   LP +++ G  V C V  ++      GK    LSL   L+ + +    + +   + 
Sbjct: 116 NEFKPLPDLYNPGDYVICYVKNINPQ----GKWLYNLSLEPQLINQNVHNSYLVKNAKIV 171

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR--KVVY 295
             +KSIEDHGY++  G+ S   FL   ++ +    + K    L  ++  ++      V+ 
Sbjct: 172 CTIKSIEDHGYVVDTGIASVRAFLATKDVDK----EKKYCNQLLCIINEVETANYSSVIK 227

Query: 296 LSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
           LS+    ++     D+   S+D+L PG  +S  V  IL NG+ ++F     G ++  +L 
Sbjct: 228 LSAKRKKINNVSIHDIA--SLDVLAPGTKLSLCVAKILSNGLQVTFGKNNIGYINQIYLD 285

Query: 356 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSK 415
           N          Y ++ +V   +L++ PT +    +L    L +++    +  GDI  ++K
Sbjct: 286 NPLSM------YIENMEVTGTLLYILPTVKLAYFSL----LTDKSEKEKLSKGDIIKKAK 335

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           V+  +   G++L+I  + +     +  ++V+ +   K+  ++K+GS  + RIL +  +E 
Sbjct: 336 VLYKESN-GIILNISESGLRGFVSLVKTNVSFD---KIPTEFKQGSTHKCRILAYNWMEH 391

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKALCPLPHMSE 533
           L    ++    +   F+ SD+  G ++   + ++D     +    G  +  + P+ H+S+
Sbjct: 392 LYVCTMEDEILKQKYFSSSDLNCGDIITVTITSIDKGSGYMHVQAGNILGFVSPM-HVSD 450

Query: 534 FEIVKPGKKFKVGAELVFRVLGVKSKR-----ITVTHKKTLVKSKLAILSSYAEATDRLI 588
             +     K K+G  +  RVL +K+       +  T K++L+KSKL +L    +A   L 
Sbjct: 451 SGL-SALNKMKIGDSIEARVLDLKTSNDNNVNVIFTLKQSLIKSKLPVLHDIHKAQCGLE 509

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
            HG ITKI+K+G  VRFY  ++G+  RS L        +  Y +GQ +   I S      
Sbjct: 510 YHGTITKIDKNGLLVRFYGNIRGWVSRSTLN-SKTHNMNWNYSIGQTITVCIES--IEKY 566

Query: 649 RINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV-IAKG----YSKGTIPTEH 703
            I L  + +  +   ++   +G ++ G   V+  +   VY+ I +G     +   +P  H
Sbjct: 567 EIKLKIVTEKQKQQTENF-SIGEMIEGT--VIESSIKGVYLRIHRGNDENVTTAFLPAGH 623

Query: 704 LADHLEHATVMKSVIKPG 721
           +A  +E  +++ S   PG
Sbjct: 624 IAPCIEIGSLLASKYNPG 641



 Score = 46.2 bits (108), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 30/220 (13%)

Query: 731 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
           ++ + N++ + K SLI S   +  D          HG +  I + G  VRF G + G+  
Sbjct: 476 NDNNVNVIFTLKQSLIKSKLPVLHDIHKAQCGLEYHGTITKIDKNGLLVRFYGNIRGWVS 535

Query: 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 850
           RS  ++ +  +++  Y +GQ++                     C  S +   ++   + E
Sbjct: 536 RS-TLNSKTHNMNWNYSIGQTI-------------------TVCIESIEKYEIKLKIVTE 575

Query: 851 EKIAMLQSSKHNGSELKWVEGFIIGSVIEG---KVHESNDFGVVVSFEEHSDVYGFITHH 907
           ++    +    N S  + +EG +I S I+G   ++H  ND  V  +F     +   I   
Sbjct: 576 KQ----KQQTENFSIGEMIEGTVIESSIKGVYLRIHRGNDENVTTAFLPAGHIAPCIEIG 631

Query: 908 QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
            L  +    G VI A +     +   + LS   V  +R+R
Sbjct: 632 SLLASKYNPGDVISALVFATKPS---IILSRTFVTQERYR 668


>gi|149247299|ref|XP_001528062.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146448016|gb|EDK42404.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1863

 Score =  211 bits (537), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/237 (45%), Positives = 156/237 (65%), Gaps = 12/237 (5%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L   AP++  +FERL+  +PNSS +W+ YM+F L +++V+KAR I ERAL+TIN REE E
Sbjct: 1610 LNTRAPQSTADFERLLIGNPNSSILWMNYMSFNLQLSEVDKAREIGERALETINYREEQE 1669

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLNIW+A  NLEN +G+  EE++ KVF+R+ QY D   +H  L+ +Y  +E+   A +L 
Sbjct: 1670 KLNIWIAMLNLENTFGS--EESLEKVFKRSCQYMDSFVMHQKLVNIYIMSEKYDAAQDLF 1727

Query: 1773 YKMIKKF-KHSCKVWLRRVQRLLKQQQE--GVQAVVQRALLSLPRHKHIKFISQTAILEF 1829
              M+KKF K     W+     LL Q+++   V  ++ RAL +LP+  HI+ + + A LEF
Sbjct: 1728 KVMVKKFGKEHVSTWVLYASFLLDQEEQLTKVHELLSRALQALPKRDHIEVVRKFAQLEF 1787

Query: 1830 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-------IRGLFERAI 1879
              G A++ RS+FEG++++ PKR DLW++Y+DQEI+L D D        IR LFER I
Sbjct: 1788 AKGDAEQARSLFEGLIADAPKRIDLWNVYIDQEIKLHDKDEGEDNVLNIRDLFERVI 1844



 Score =  191 bits (486), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 219/865 (25%), Positives = 372/865 (43%), Gaps = 99/865 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAEV--DAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG  +LT  E  EI  E   D  FE V   L+KK  K        + +         
Sbjct: 148 FPRGGSTALTPMEVKEISNEATRDVLFE-VANNLNKKRSKPDANLSTVSRKKQKKNSKKG 206

Query: 112 GDGI--------SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---L 160
                       S +       +T KN+  G  ++G +  VN+ DLV+ L   L G   +
Sbjct: 207 SKNGDDDNDDVESDEKKTAVEYLTFKNLLPGSLVFGQIQYVNKLDLVLALENNLVGYVPI 266

Query: 161 ARAADALDPILD--------------------------------NEIEANEDNLLP---T 185
              + A+   +D                                    A E  L P   +
Sbjct: 267 TSISTAITNAIDKFEEESEEEESEDEEDEEKEDDEKNDKSKIHATTFSAKEKKLFPDLKS 326

Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
           +F VG  +   V++ D+ +K   KR+I LSL   L+   +  E +  G V+   VKS+ED
Sbjct: 327 MFQVGSWLKAKVVESDNSQK---KRRIELSLEPKLVNANIEDEDLIPGNVILCAVKSVED 383

Query: 246 HGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRTR----KVVYLSS 298
           HG IL  G   F+ F+    L +N+G++   ++ GL+L  V+ S    R    K V L++
Sbjct: 384 HGVILDTGFEKFSAFMSNKEL-KNAGLEPASLQEGLVLSCVLVSQPSGRIITVKPVSLAA 442

Query: 299 --DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 356
              P  VS          S+D + PG++V+  V  I   G++        GT+ I  +QN
Sbjct: 443 GKKPAVVSTIT-------SVDSIQPGILVNALVSDITSEGIITRVFGLVDGTISIAQIQN 495

Query: 357 TFPTTNWKNDYNQHKKVNARILFV--DPTSRAVGLTLNPYLL-------HNRAPPSHVKV 407
            F T + K+ Y     +  RIL +     ++ + L++ P  +        N+       +
Sbjct: 496 -FNTADLKHKYAIGSTIKTRILAILEKEGTKKLLLSMLPTTMSLDNHQKQNQEALEAYPI 554

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
           G I+D+ +V+ +D+   + ++  S   S    +  S++  +   K    Y  GS  + R+
Sbjct: 555 GFIFDEVEVLGLDKSY-VYVNFGSK--SLFGQIHNSNLGGD---KSLLNYSVGSKHKARV 608

Query: 468 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG-KVIAV--DSFGAIVQFPGGVKA 524
           LGF  ++ L                  D+  G  +   +V+ V  D+ G  V+       
Sbjct: 609 LGFNTVDNLLVLTFDDKIINAEYLNVRDIPLGAFLPNCEVVKVLPDNGGLSVKINDEFMG 668

Query: 525 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVK-SKLAILSSYAEA 583
           L P   MS+ ++V P +KF+ G+++  R+L  + K   +T +K LV      I+  + +A
Sbjct: 669 LVPFNQMSDIKLVYPERKFRAGSKVKGRLLTHRGKTPLITLRKALVNLEDDEIILQFEDA 728

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
                T+  + K    G  V F+  ++ F P++E+      + S    +GQ+VK +I+  
Sbjct: 729 KVGFKTNATVEKFIHGGAIVSFFGSLRAFLPKTEISETFVDDASKFLKLGQIVKVKILDI 788

Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSG-----VVDVVTPNAVVVYVIAKGYSKGT 698
               +R+ ++ M + + +S+    ++  L+SG      + V   N  V+  +     +G 
Sbjct: 789 KEDQKRVVVT-MKQSSELSDAQKTEISQLLSGRSIINAIVVEKKNNAVLIELEGSNLRGV 847

Query: 699 IPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--LPS 754
           I    L+D + E    M   ++   +   L++  D ++  ++ +AK S+I +A++  LP 
Sbjct: 848 INDGQLSDGNYEQNRAMFKKLEISSKIRALVLEKDLKARTIIATAKKSMIEAAEKNALPI 907

Query: 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
           D   I PN VV GYV ++   G FV F GRLTG      A      DLSK ++  QS+  
Sbjct: 908 DFDDIQPNKVVKGYVKSVTNLGLFVSFTGRLTGLVLAKYATANANEDLSKKFHKYQSLTC 967

Query: 815 NILDVNSETGRITLSLKQSCCSSTD 839
            +L V++E  R  L+L  S   S D
Sbjct: 968 RVLSVDTENKRFLLALLNSTNDSGD 992



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 53/358 (14%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGI-----DVKP-GL 278
            L L+ +     L  +V +I D G++     PS  G +   +L  +  +     +  P G 
Sbjct: 1115 LKLDDITLEQELLCFVNNI-DRGFVWVSISPSVRGRISFMDLTNDGSVFQGFENKYPIGT 1173

Query: 279  LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL----E 334
             +Q  V++ID+  K + L S  + VSK     ++ + I    P  +V  +   +L    +
Sbjct: 1174 AIQAKVKNIDQEHKSLSLISRDNHVSK-----VEDVQIGQTYPARIVKVKDSYVLVDLGD 1228

Query: 335  NGVMLSFLT-----YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 389
              +  SF+T     Y      +FHL          N+Y     V A++L +D  +  + +
Sbjct: 1229 KVIASSFITDALNDYSDKLAHVFHL----------NEY-----VAAKVLDIDVENNKIAV 1273

Query: 390  TLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV------STPAYVTIS 443
             L        A    +   D   + +VV+     G + +I S  V         A V +S
Sbjct: 1274 MLRNEESSAAASDKTINSVDDLSRGQVVK-----GFVKNIASNGVYVSLGRCVHALVRVS 1328

Query: 444  DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGM 500
            D+++  ++  +K +K    V  +I+  +  +G     LK S   G   ++  + D+  G 
Sbjct: 1329 DLSDSYLKDWKKFFKPAQSVIGKIINCKE-QGKVLMTLKESEVNGDLKILKNYDDLVVGE 1387

Query: 501  VVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            V +G V  V  FG  V+  G   +  LC    +SE ++      F  G  +  ++L V
Sbjct: 1388 VFEGTVTKVTDFGVFVKLDGTINISGLCHHSEISENDVSNIASLFGEGDRVKVKILKV 1445


>gi|157127501|ref|XP_001655011.1| programmed cell death protein 11 (pre-rrna processing protein rrp5)
            [Aedes aegypti]
 gi|108872936|gb|EAT37161.1| AAEL010827-PA [Aedes aegypti]
          Length = 1542

 Score =  211 bits (536), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 1623 KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKY 1681
            K ++ K    A K+E    EQ IR  E+ L +    P TPD+F+R V S PNSS +WI+Y
Sbjct: 1239 KRLNAKERFEAMKQE----EQRIRQIEDELADASVDPHTPDQFDRQVLSQPNSSLLWIRY 1294

Query: 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741
            M F +  A+VEKAR++A RAL+TIN REE E+LN+W+A  NLE  Y     E   +V Q 
Sbjct: 1295 MVFHMESAEVEKARAVARRALKTINFREEGERLNVWIALLNLELRYETV--ETFKEVLQE 1352

Query: 1742 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG- 1800
            A+QY D  KV+  ++ +     +   A +++  + K+F+   ++WL       K  Q   
Sbjct: 1353 AIQYNDAFKVYSRVIEIVIDCGKTAEALDIIDILQKRFRKQPEMWLLVGSSYYKLGQAAK 1412

Query: 1801 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860
            V+ ++ +AL SL   +HI  I + A L  +NG  D    +FE IL+ YPKRTD+WS Y+D
Sbjct: 1413 VKPLLSKALKSLETKEHIPLIVKFAFLHNRNGERDEAHILFEQILTSYPKRTDIWSQYVD 1472

Query: 1861 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
              ++ G VD+ R   +RAI+  LP K MK L+ KY+ +E+  G+ E ++ +KQ A  YVE
Sbjct: 1473 MLVKDGLVDVARQTLDRAIAQRLPMKNMKTLYTKYVAFEEKHGDREAVKRIKQAAANYVE 1532

Query: 1921 STLA 1924
              L+
Sbjct: 1533 KQLS 1536



 Score =  101 bits (252), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 158/701 (22%), Positives = 288/701 (41%), Gaps = 56/701 (7%)

Query: 52  PVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGL-----HKKNKKKKKKTERKANETVDD 106
           P FPRG      + E D+ H       ++VE G       K +K + K+ ++   E ++ 
Sbjct: 6   PSFPRG-----RKVETDDDHKPRKKLKKSVEYGASTAKDEKAHKHRPKERQQALLEQMEQ 60

Query: 107 LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG------L 160
                   +S      A  +  +    GM L G V ++ + D+ + LPG L G      +
Sbjct: 61  DKEELEQSVS------AAPLQFRTAQEGMLLMGCVYKITKMDIKVSLPGRLYGTVPIMAI 114

Query: 161 ARAAD-ALDPILDNEIEANEDNL--LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLR 217
           + A +  L  ++   +   E+    L  ++H G LV   +     +K   G     L+L 
Sbjct: 115 SEAYNNRLHSLVQKSLGGPEEQCPGLEELYHEGDLVYVKIKSKHSEKNHFG-----LTLD 169

Query: 218 LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPG 277
              L+  L+ + + EG+VL+A V+  EDHGY ++ G+ +   FLP +N+  N  I  +  
Sbjct: 170 PQDLHSELTCKHLVEGLVLSATVEEEEDHGYQMNVGIRNVRAFLPTHNVRNNKMIVGRNL 229

Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
                 V   + +  VV  +  P    K    ++   ++D LVPG +V+  V+S+L+NG+
Sbjct: 230 FCSVEKVTHGNGSATVVLRAFKPTEPRKL---EVAQPNVDSLVPGSVVTFTVESVLQNGL 286

Query: 338 MLSFLTYFTGTVDIFHLQNTF--PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
             S    F  TV  F  +N    P ++ K  Y   K++ AR+L+V P ++ V +TL  + 
Sbjct: 287 QGSL---FDDTVPAFVNENMLEKPLSSLKQ-YELFKEIPARVLYVMPLTKHVFVTLAHFD 342

Query: 396 LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS-TPAYVTISDVAEE-EVRKL 453
            +  +    V  G I   +K++      G+   I     +  P Y+  S   +  + + +
Sbjct: 343 GNRASVADPVTPGKIIQDAKIIHKSLN-GVWFQIGKKHKALLPKYILKSKYNQNYDEQIV 401

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             KY+ GS   VR++ F   +            E   FT +D+K G +   ++  V    
Sbjct: 402 MAKYQVGSVHTVRVMRFEAFDRTIIVTDDEEKIETKYFTLNDLKVGDIYNCRITKV---- 457

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVK 571
            + +  G + +L  L  +      +P K +        R++G+   R     T+    +K
Sbjct: 458 -LDKKRGFLVSLDNLKGIVTAYNFEPSKTYAANQMAKLRLIGIDEDRKMAQFTNHPEYLK 516

Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
               +L+S  +        G +   ++    V F N +     +    +       S   
Sbjct: 517 KSAKLLTSREDVKQGQRFLGTVISEQEKFFIVAFCNKITAICFKFCRAVTQDQNRISRLK 576

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            G V +  +        R  +   +     SE+    LG +VSG +  +      +Y++ 
Sbjct: 577 PGVVDRFTVNEVSEDGSRFTVVIPLDAE--SEN----LGHIVSGTITGIYATGADIYLV- 629

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDN 732
           K  + GT+P E  +D   H  +  SV+K G +   + V +N
Sbjct: 630 KENATGTVPPELFSDFPPHNALYASVLKEGEQLRVVNVKEN 670


>gi|358379965|gb|EHK17644.1| hypothetical protein TRIVIDRAFT_76054 [Trichoderma virens Gv29-8]
          Length = 1796

 Score =  209 bits (531), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 217/808 (26%), Positives = 351/808 (43%), Gaps = 89/808 (11%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEVDAEF---EAVERGLHKKNKKKK-------KKTER 98
           DD PVFPRGGG  LT  E+ +I  E  A+    E  E G   + KK K       KKT++
Sbjct: 65  DDEPVFPRGGGSVLTPLEQKKIQMEAKADAIREEEFETGAKSQKKKAKKSTAKSDKKTDK 124

Query: 99  KANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLR 158
           KA E    + SL                  K +  G  + G V  ++   L + LP  L 
Sbjct: 125 KAEEDTIKIESL----------------NFKRLVKGSLVLGQVTRISNLSLEVSLPNNLI 168

Query: 159 GLARAADALDPILDNEIEANEDNL---------------LPTIFHVGQLVSC-IVLQLDD 202
           G A    A+   L + ++ + +                 L T+F VGQ V   +V  +D 
Sbjct: 169 GHASIV-AISAQLTSRLQGDAEKEGESDEEESSDESDVNLKTMFKVGQYVRAYVVSTMDG 227

Query: 203 DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP 262
                G+RKI LSLR S    GL  + V     + A V S+E+ G ++  G+P+  GFLP
Sbjct: 228 AAGGKGRRKIELSLRPSEANTGLEKDDVVPNSTVMASVVSVEERGCVMDLGIPNLNGFLP 287

Query: 263 RNNLAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLL 319
              +  +  ID   ++PG +    V   + + K+  LS   D +           +I+  
Sbjct: 288 NGEI--DPLIDQERLQPGAVFLCQVTGKN-SNKIAQLSLKQDKLGSTKAFPADATTINTF 344

Query: 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
           +PG +V+  V      G+    +     T D+ H        + K  Y    KV ARI+ 
Sbjct: 345 LPGTIVNILVSDNEGRGLAGKIMGAVDATADLIHSGIGPNDDDLKAKYKIGSKVKARIIC 404

Query: 380 VDPTSR--AVGLTLNPYLL----------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLL 427
             PT++   +G++L P+++            R P   + +    ++  V  V+  +GL +
Sbjct: 405 NFPTAKDPKLGISLLPHIMSLTQKQQDDDEKRRPIEVMPISSFVEKCTVRHVEPDIGLFV 464

Query: 428 DIPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKAS 484
           D     +    +V IS V + +V  L +    +K G+  R R++G+  ++GL +     S
Sbjct: 465 DTGIAGLG--GFVHISRVKDGKVDALYESSGPFKIGTVHRGRVVGYNEMDGLFSISFAKS 522

Query: 485 AFEGLVFTHSDVKPGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
             E       D+  G V+ G++  +        G I++   G+       HMS+  +  P
Sbjct: 523 LLEQQYIRLEDIPLGSVINGEIEKLVIKEQGVTGLIIKIADGISGFVTETHMSDIRLQHP 582

Query: 540 GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            KKF+ G ++  RVL V    +++ +T KKTLV S+   + SY + +  + T G I K++
Sbjct: 583 EKKFREGMKVKARVLSVNFAKRQMRLTLKKTLVNSEAPTIKSYDDVSIGMQTLGTIVKVQ 642

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--- 654
           ++G  ++FY  ++GF P SE+      +P   +  GQVV    +   P +RR  +S    
Sbjct: 643 QNGAHIQFYGKLRGFLPVSEMSEAYIRDPMEHFRAGQVVSVHALEVDPEARRFIVSCKDP 702

Query: 655 ----MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LE 709
               + K T +     +KLG +VS  V   T + + V ++     K  +P  HL D    
Sbjct: 703 GAFGLEKQTALKN---LKLGDIVSAKVTQKTEDQIFVELVDSQL-KAILPVGHLTDKSTS 758

Query: 710 HATVMKSVIKPGYEFDQLLVLD-NESSN-LLLSAKYSLINSAQ--QLPSDASHIHPNSVV 765
                   I  G     L+VL+ NE+   + L+ K SL+ ++Q   L          +VV
Sbjct: 759 KNQYAWKRISAGQTLSNLMVLEKNENRRAITLTQKPSLVKASQDNNLLKSFHDAKVGAVV 818

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSK 793
            G+V NI  T  FV+F G L    PR +
Sbjct: 819 QGFVRNITVTAVFVQFAGSLNALLPRGR 846



 Score =  194 bits (493), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/285 (39%), Positives = 173/285 (60%), Gaps = 15/285 (5%)

Query: 1647 AAEERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1704
            A  +R  E DA  P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR IAERA+++
Sbjct: 1492 AQVDRTAELDAHGPQTASDYERLLLGQPDSSELWIAYMAFQMQVSELPKAREIAERAIKS 1551

Query: 1705 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1764
            INIREE EKLN+WVAY NLE  YG+  ++ V  VF+RA QY D ++V+  L  +Y ++E+
Sbjct: 1552 INIREETEKLNVWVAYLNLEVAYGS--KQTVEDVFKRACQYNDEQEVYERLASIYIQSEK 1609

Query: 1765 NKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFI 1821
             K ADEL   M+KKF   +  VW      L   K +    +A++ RA   L  H     +
Sbjct: 1610 LKEADELFEAMLKKFGAKAPSVWTNYAHFLHVTKNEPARARALLPRATQQLDSHNGQNIV 1669

Query: 1822 SQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLF 1875
            S+ A LEF+  NG  +RGR+MFEG+L+ +PK+ DLW+  LD EI +     D   +R +F
Sbjct: 1670 SRFAALEFRSPNGEPERGRTMFEGLLAAWPKKGDLWNQLLDLEIGIASSSADHTAVRDVF 1729

Query: 1876 ERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
            ER   +  L P++ +  F+++  +E+ +  + + + V  KA E+ 
Sbjct: 1730 ERRTRVKGLKPQQAEKWFRRWAAWEEKLDAKGK-DKVMAKAQEWA 1773



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 128/636 (20%), Positives = 249/636 (39%), Gaps = 108/636 (16%)

Query: 367  YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLL 426
            + +  KV AR+L V+   R + LTL   L+++ AP         YD   +    + LG +
Sbjct: 586  FREGMKVKARVLSVNFAKRQMRLTLKKTLVNSEAPTIKS-----YDDVSIGM--QTLGTI 638

Query: 427  LDIPSTPVSTPAY------VTISDVAEEEVRKLEKKYKEGSCVRVRIL-----GFRHL-- 473
            + +         Y      + +S+++E  +R   + ++ G  V V  L       R +  
Sbjct: 639  VKVQQNGAHIQFYGKLRGFLPVSEMSEAYIRDPMEHFRAGQVVSVHALEVDPEARRFIVS 698

Query: 474  --EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPH 530
              +  A G+ K +A + L       K G +V  KV         V+     +KA+ P+ H
Sbjct: 699  CKDPGAFGLEKQTALKNL-------KLGDIVSAKVTQKTEDQIFVELVDSQLKAILPVGH 751

Query: 531  MSEFEIVK---PGKKFKVGAELV-FRVLGVKSKR--ITVTHKKTLVKSKL--AILSSYAE 582
            +++    K     K+   G  L    VL     R  IT+T K +LVK+     +L S+ +
Sbjct: 752  LTDKSTSKNQYAWKRISAGQTLSNLMVLEKNENRRAITLTQKPSLVKASQDNNLLKSFHD 811

Query: 583  ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
            A    +  G++  I     FV+F   +    PR  L  +   +P       + ++ RI+S
Sbjct: 812  AKVGAVVQGFVRNITVTAVFVQFAGSLNALLPRGRLSAEAQSQPDFGLRKFESIEVRIIS 871

Query: 643  SIPASRRINLSFMMKPT-------------RVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 689
            +IP  +RI ++    P                + +D +  GS     +  +    + V +
Sbjct: 872  TIPDLKRILVAPADSPVAEPVSSKPKTSTKAPAPEDGLAFGSTAQARITSIKDTQLNVQL 931

Query: 690  IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD----------QLLVLDNESSNLLL 739
            +     +G I    + D  E       ++ P    D          ++L + +   +  L
Sbjct: 932  VDSEI-QGRIDVSQIFDKWE------DIVDPKDPLDKFNKKQILRVKILGVHDAKDHRFL 984

Query: 740  SAKYSLINSAQQL---PSDASHIHPNSVV---------H-GYVCNIIETGCFVRFLGRLT 786
               +   +S  +L   PSD S+  PN +          H  +V N+     +V     + 
Sbjct: 985  PFSHRSAHSVMELTTKPSDLSNDAPNPISLDDLKVGDNHIAFVNNVTSQYLWVNLSPNVR 1044

Query: 787  GFAPRSKAVDGQR--ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASFM 843
            G     +A D      DL   + VG ++++ +  V+++  R+ LS +    S +   + +
Sbjct: 1045 GRISIMEASDDLSLLNDLEANFPVGSALKARVTSVDAKNNRLDLSARSPNASEAITWASL 1104

Query: 844  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
            +++ +L  KI     +K N  ++       +   + G VH            +  D YG 
Sbjct: 1105 KQNMILPGKI-----TKVNERQVL----VKLSETVSGPVH----------LPDMVDDYGS 1145

Query: 904  ITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
            +   +      + G +++ +I+DV  + + + LS++
Sbjct: 1146 VDTLKY-----KKGDIVRVSIVDVDPSNKRIRLSMR 1176



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 145/327 (44%), Gaps = 37/327 (11%)

Query: 277  GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
            G  L+  V S+D     + LS+     S+ +T     +  ++++PG     ++  + E  
Sbjct: 1069 GSALKARVTSVDAKNNRLDLSARSPNASEAIT--WASLKQNMILPG-----KITKVNERQ 1121

Query: 337  VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
            V++      +G V +  + + + + +    Y +   V   I+ VDP+++ + L++ P  +
Sbjct: 1122 VLVKLSETVSGPVHLPDMVDDYGSVDTLK-YKKGDIVRVSIVDVDPSNKRIRLSMRPSRI 1180

Query: 397  HNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
             +   P         + +  GDI         D+GL +LL    T     A+V IS++++
Sbjct: 1181 MSSTLPVADKEISKITQLATGDIVRGFVKNVADKGLFVLLGGQVT-----AFVKISNLSD 1235

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLV-------FTHSDVKPGM 500
              +++ +  ++    V+ RI+        AT  L+ S    +V         ++D+K G 
Sbjct: 1236 RFLKEWKDSFQIDQLVKGRIISL----DAATSQLELSLKSSVVDEDYTPPLGYNDIKEGQ 1291

Query: 501  VVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GV 556
            +V G V  V+ FGA  +V     V  LC    M++  +    K +K G ++  RVL   V
Sbjct: 1292 IVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNAVKDATKLYKEGDKVKARVLEVDV 1351

Query: 557  KSKRITVTHKKTLVKSKLAILSSYAEA 583
              +RI+   K +  + +   ++S +EA
Sbjct: 1352 SKRRISFGLKPSFFEDEDTDMASDSEA 1378



 Score = 48.5 bits (114), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 14/222 (6%)

Query: 456  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD--------VKPGMVVKGKVI 507
            KYK+G  VRV I+            ++ S         +D        +  G +V+G V 
Sbjct: 1150 KYKKGDIVRVSIVDVDPSNKRIRLSMRPSRIMSSTLPVADKEISKITQLATGDIVRGFVK 1209

Query: 508  AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSKRITVTH 565
             V   G  V   G V A   + ++S+  + +    F++   +  R+  L   + ++ ++ 
Sbjct: 1210 NVADKGLFVLLGGQVTAFVKISNLSDRFLKEWKDSFQIDQLVKGRIISLDAATSQLELSL 1269

Query: 566  KKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQGFAPRSELGLDPG 623
            K ++V         Y +  +  I  G + K+E+ G F+   N   V G   RS++  +  
Sbjct: 1270 KSSVVDEDYTPPLGYNDIKEGQIVTGVVRKVEEFGAFILVDNSANVSGLCHRSQMADNAV 1329

Query: 624  CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
             + + +Y  G  VK R++    + RRI  SF +KP+   ++D
Sbjct: 1330 KDATKLYKEGDKVKARVLEVDVSKRRI--SFGLKPSFFEDED 1369


>gi|392571061|gb|EIW64233.1| hypothetical protein TRAVEDRAFT_138819 [Trametes versicolor
           FP-101664 SS1]
          Length = 1486

 Score =  208 bits (529), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 233/857 (27%), Positives = 380/857 (44%), Gaps = 103/857 (12%)

Query: 49  DDVPVFPRGGGHSLTQRE----RDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETV 104
           DD+  FPRGGG SLT  E    R E   E D+E  A E       K+++K      ++T 
Sbjct: 47  DDID-FPRGGGTSLTPLEVKTLRAEAAKEADSELFA-ESAKEATTKRRRKSEAGTKSKTT 104

Query: 105 DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LA 161
           D  G         K       +  K ++ GMK+ G V  V    L++ LP  L     + 
Sbjct: 105 DKDGK--------KNVIRIEHLNYKRVAVGMKILGQVVSVEPLALIVSLPNQLFAHVPIT 156

Query: 162 RAADALDPILDNEIEA-NEDN--------LLPTIFHV---GQLVSCIV------------ 197
           + +  L  IL++E +A N D+         +P +F +   GQ V  +V            
Sbjct: 157 QISSQLTHILESEDDAENSDDEEEEASASRVPDLFEIFQPGQYVRAVVSAVHQPGSTDAT 216

Query: 198 -LQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS 256
            L    D+ +   R++ LSL    + +G++   +  G  L+A VKS+EDHGYIL  G+P 
Sbjct: 217 GLGRARDEVQKASRRVELSLVPEKVNEGVAKADLLAGFALSASVKSVEDHGYILDLGIPE 276

Query: 257 FTGFLPRNNLAEN--SGIDVK--PGLLLQGVVRSID---RTRKVVYLSSDPDTVSKCVTK 309
            +GFL     A+   SG + K   G LL  +V  +    RT  V   S  P T       
Sbjct: 277 VSGFLSFKAAAQKGPSGAEKKFHVGRLLDVIVTKLSDNGRTCNVSVDSYAPKTAPLTEVT 336

Query: 310 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
            +K +     VPG +V + V ++  +G++L  L +F GTVD FHL+    + + +++Y  
Sbjct: 337 SVKSV-----VPGALVQSLVTAVQPDGLILQVLGFFDGTVDQFHLR----SGDTEDNYKI 387

Query: 370 HKKVNARILF-VDP-TSRAVGLTLNPYLLH---------------NRAPPSHVKVGDIYD 412
            +KV AR+L+ + P T     L+L  +++                  A P    VG   D
Sbjct: 388 GQKVKARVLYDISPSTPPRFALSLADHVVKYSAKSAASGSAATDLREAYP----VGTTLD 443

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILG 469
             KV R++   GL +++ S       +V IS V++E V  L      +K G+  R R+ G
Sbjct: 444 AVKVTRIESERGLTVEVGS---GVAGFVHISQVSDEHVPTLSTTSGAWKVGTVHRARVTG 500

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
           +  L+GL    LK S         +DV+ G ++KG V  +      V   G V  +    
Sbjct: 501 YFPLDGLLQLSLKPSILAQKFLQVADVQVGELIKGTVKKLTDTALFVSISGNVDGVIWPN 560

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRL 587
           H ++  +  P K+FK G  +  RVL V S  KRI +T KKTLV+S L I+S  ++    +
Sbjct: 561 HYADIVLKHPQKRFKPGGSIKCRVLVVDSERKRIALTAKKTLVESTLPIVSQLSDVRVGV 620

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +TH  I KI +    V FYN ++   P  E         S+ + +G+ V+ R+++    +
Sbjct: 621 VTHAVIFKISEKSLQVEFYNNLKASVPAREASETTLSSLSAAFAIGKPVQVRLIAVDAET 680

Query: 648 RRINLSFMMKP----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            RI  S         + +++   V +G +V GVV  +  +  VV  +        +   +
Sbjct: 681 GRITASIRQAAPNFKSAITDISGVDIGDIVEGVVSDIRKDKAVV-TLQPTQVTALLSLNN 739

Query: 704 LADHLEHATV-MKSVIKPGYEFDQLLVL--DNESSNLLLSAK---YSLINSAQQLPSDAS 757
           LA+  E +   ++S +K G +   L+V   + E   +L+++K      I     L  D  
Sbjct: 740 LANRREVSVAQLRSALKVGEKLQDLVVTSRNPEKGFVLVASKPKEKEAILQKNHLSLDT- 798

Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNI 816
            +    +V G V      G  ++    + G    + AVD   +   K +  V   +++ +
Sbjct: 799 -VQAGQLVGGRVLRHNRYGALIKLTNSIMGVLHPTDAVDDYES--GKPFPGVDSVLKAVV 855

Query: 817 LDVNSETGRITLSLKQS 833
           L V+ E  ++ LS + S
Sbjct: 856 LSVDKERRQLMLSTRMS 872



 Score =  160 bits (404), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 203/794 (25%), Positives = 351/794 (44%), Gaps = 94/794 (11%)

Query: 761  PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL-DV 819
            P ++V   V  +   G  ++ LG   G   +     G   D    Y +GQ V++ +L D+
Sbjct: 343  PGALVQSLVTAVQPDGLILQVLGFFDGTVDQFHLRSG---DTEDNYKIGQKVKARVLYDI 399

Query: 820  NSETG-RITLSLKQSCC--------SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            +  T  R  LSL             S + A+ ++E + +   +  ++ ++        VE
Sbjct: 400  SPSTPPRFALSLADHVVKYSAKSAASGSAATDLREAYPVGTTLDAVKVTRIESERGLTVE 459

Query: 871  GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKA 930
               +GS + G VH S      VS +EH       T    +GA  + G+V +A +      
Sbjct: 460  ---VGSGVAGFVHISQ-----VS-DEH-----VPTLSTTSGAW-KVGTVHRARVTGYFPL 504

Query: 931  ERLVDLSLK-TVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS 989
            + L+ LSLK ++   +F +                  D+ V + +   V+ + +  L +S
Sbjct: 505  DGLLQLSLKPSILAQKFLQV----------------ADVQVGELIKGTVKKLTDTALFVS 548

Query: 990  LPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 1049
            +      + + +       K PQK+F  G S+   V+ + S     R  + L A      
Sbjct: 549  ISGNVDGVIWPNHYADIVLKHPQKRFKPGGSIKCRVLVVDSE----RKRIALTAKKTLVE 604

Query: 1050 SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 1109
            S+     + S   VG +  A I +I    L+++F       +   E ++     + +L +
Sbjct: 605  STLPIVSQLSDVRVGVVTHAVIFKISEKSLQVEFYNNLKASVPAREASE---TTLSSLSA 661

Query: 1110 NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1169
             F IG+ V  R+IA   +            I  S+   +      + +   V IG  V G
Sbjct: 662  AFAIGKPVQVRLIAVDAETG---------RITASIRQAAPNFKSAITDISGVDIGDIVEG 712

Query: 1170 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRR--FHIGKAVTGHVL-SINKE 1226
             V  +  + A++T+       L  L++     E+   Q R    +G+ +   V+ S N E
Sbjct: 713  VVSDIRKDKAVVTLQPTQVTALLSLNNLANRREVSVAQLRSALKVGEKLQDLVVTSRNPE 772

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
            K  + +  +P +     +   +S D +Q     G +VGGR+  +     G ++++   + 
Sbjct: 773  KGFVLVASKPKEKEAILQKNHLSLDTVQA----GQLVGGRV--LRHNRYGALIKLTNSIM 826

Query: 1287 GRVHFTE-LKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1345
            G +H T+ + +     P  G D    +K  VL + +  R               M ST  
Sbjct: 827  GVLHPTDAVDDYESGKPFPGVD--SVLKAVVLSVDKERRQL-------------MLSTRM 871

Query: 1346 SDLSTDVDTP--GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
            S L    D P   + +  +  L     V+G++K++   G F+ L R +DA+V +  L D 
Sbjct: 872  SRLFPSQDKPIVDREITSLSQLKVGDKVRGFIKSIAEHGLFVTLGRDIDARVQIKELFDD 931

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
            +V+  +  F + +LV GR+LSV    K++E++ ++ D +   QS++ +LS+L  G  + G
Sbjct: 932  FVKDWKSRFTVNQLVNGRILSVNVEKKQLELSFRSGDLKRDGQSQL-SLSDLSEGQKIDG 990

Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI----YRAGEKVKVKILKVDKE 1519
            ++K+VE YGLFI IE + L GLCH SELS D+ D   T+    +R G+KVK  IL VD E
Sbjct: 991  RVKKVEDYGLFIEIEGSKLSGLCHKSELS-DNKDGDVTLALRSFRVGDKVKAVILSVDLE 1049

Query: 1520 KRRISLGMKSSYFK 1533
            KRR+S G+K SYF+
Sbjct: 1050 KRRVSFGLKPSYFE 1063



 Score = 46.2 bits (108), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 100/472 (21%), Positives = 190/472 (40%), Gaps = 44/472 (9%)

Query: 212 IWLSLRLSLL-YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-- 268
           + LSL+ S+L  K L +  VQ G ++   VK + D    +     +  G +  N+ A+  
Sbjct: 508 LQLSLKPSILAQKFLQVADVQVGELIKGTVKKLTDTALFVSIS-GNVDGVIWPNHYADIV 566

Query: 269 --NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC--VTKDLKGISIDLLVPGMM 324
             +     KPG  ++  V  +D  RK + L++    V     +   L  + +     G++
Sbjct: 567 LKHPQKRFKPGGSIKCRVLVVDSERKRIALTAKKTLVESTLPIVSQLSDVRV-----GVV 621

Query: 325 VSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 384
               +  I E  + + F      +V       T   ++    +   K V  R++ VD  +
Sbjct: 622 THAVIFKISEKSLQVEFYNNLKASVPAREASET-TLSSLSAAFAIGKPVQVRLIAVDAET 680

Query: 385 RAVGLTLN---PYLLHNRAPPSHVKVGDIYDQS-KVVRVDRGLGLLLDIPSTPVSTPAYV 440
             +  ++    P         S V +GDI +     +R D+ +  L      P    A +
Sbjct: 681 GRITASIRQAAPNFKSAITDISGVDIGDIVEGVVSDIRKDKAVVTL-----QPTQVTALL 735

Query: 441 TISDVA---EEEVRKLEKKYKEGSCVRVRILGFRHLE-GLATGILKASAFEGLV----FT 492
           +++++A   E  V +L    K G  ++  ++  R+ E G      K    E ++     +
Sbjct: 736 SLNNLANRREVSVAQLRSALKVGEKLQDLVVTSRNPEKGFVLVASKPKEKEAILQKNHLS 795

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA-LCPLPHMSEFEIVKP---------GKK 542
              V+ G +V G+V+  + +GA+++    +   L P   + ++E  KP            
Sbjct: 796 LDTVQAGQLVGGRVLRHNRYGALIKLTNSIMGVLHPTDAVDDYESGKPFPGVDSVLKAVV 855

Query: 543 FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF 602
             V  E    +L  +  R+  +  K +V  ++  LS   +  D++   G+I  I +HG F
Sbjct: 856 LSVDKERRQLMLSTRMSRLFPSQDKPIVDREITSLSQL-KVGDKV--RGFIKSIAEHGLF 912

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           V     +       EL  D   +  S + V Q+V  RI+S     +++ LSF
Sbjct: 913 VTLGRDIDARVQIKELFDDFVKDWKSRFTVNQLVNGRILSVNVEKKQLELSF 964



 Score = 45.1 bits (105), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 102/509 (20%), Positives = 209/509 (41%), Gaps = 73/509 (14%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRI----------HITEVNDDKSNV--------- 1103
            VG  +  ++  ++PL L +         +          HI E  DD  N          
Sbjct: 125  VGMKILGQVVSVEPLALIVSLPNQLFAHVPITQISSQLTHILESEDDAENSDDEEEEASA 184

Query: 1104 --VENLFSNFKIGQTVTARIIAKSNKPD--------------MKKSFLWELSIKPSMLTV 1147
              V +LF  F+ GQ V A +++  ++P                K S   ELS+ P    V
Sbjct: 185  SRVPDLFEIFQPGQYVRA-VVSAVHQPGSTDATGLGRARDEVQKASRRVELSLVPE--KV 241

Query: 1148 SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE--PSELQE 1205
            +E  +K      D+  G  ++  V  V++   +L +     +      +A +  PS    
Sbjct: 242  NEGVAK-----ADLLAGFALSASVKSVEDHGYILDLGIPEVSGFLSFKAAAQKGPSGA-- 294

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1265
             +++FH+G+ +   V  ++   +   + +    D  + KT  ++       +  G +V  
Sbjct: 295  -EKKFHVGRLLDVIVTKLSDNGRTCNVSV----DSYAPKTAPLTEVTSVKSVVPGALVQS 349

Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVL-EISRTVR 1324
             ++ +     GL++Q+     G V    L++    D    Y  GQ VK +VL +IS +  
Sbjct: 350  LVTAVQP--DGLILQVLGFFDGTVDQFHLRS---GDTEDNYKIGQKVKARVLYDISPSTP 404

Query: 1325 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1384
              F + L+         S  S   +TD       L +   +   +      +  + +G  
Sbjct: 405  PRFALSLADHVVKYSAKSAASGSAATD-------LREAYPVGTTLDAVKVTRIESERGLT 457

Query: 1385 IMLSRKLDAKVLLSNLSDGYV---ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            + +   +   V +S +SD +V    +    + +G +   RV    PL   ++++LK S  
Sbjct: 458  VEVGSGVAGFVHISQVSDEHVPTLSTTSGAWKVGTVHRARVTGYFPLDGLLQLSLKPS-- 515

Query: 1442 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1501
                  +   ++++ VG+++ G +K++    LF++I   N+ G+   +  ++  + + + 
Sbjct: 516  --ILAQKFLQVADVQVGELIKGTVKKLTDTALFVSISG-NVDGVIWPNHYADIVLKHPQK 572

Query: 1502 IYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             ++ G  +K ++L VD E++RI+L  K +
Sbjct: 573  RFKPGGSIKCRVLVVDSERKRIALTAKKT 601


>gi|170062256|ref|XP_001866588.1| programmed cell death protein 11 [Culex quinquefasciatus]
 gi|167880230|gb|EDS43613.1| programmed cell death protein 11 [Culex quinquefasciatus]
          Length = 1481

 Score =  208 bits (529), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 186/325 (57%), Gaps = 9/325 (2%)

Query: 1604 EQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE--IRAAEERLLEKDA-PRT 1660
            +QP  D   S +    D  +   +K+   AK++ +  R++E  IR  EE L +    P T
Sbjct: 1151 QQPPSD---SSDDEENDRVEVPAKKSRLTAKERFEAMRQEEKRIRQIEEELADSSVDPHT 1207

Query: 1661 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY 1720
            PD+F+R++ + PNSS +WI+YM F +  A+++KAR++A RAL+TIN REENE+LN+W+A 
Sbjct: 1208 PDQFDRMLLAQPNSSLLWIRYMVFHMESAEIDKARAVARRALKTINFREENERLNVWIAL 1267

Query: 1721 FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1780
             NLE  Y     E   ++ Q A+QY DP KV+  ++ +     +      +   + K+F+
Sbjct: 1268 LNLELRYETI--ETFKEILQEAVQYNDPYKVYSKVIEVLIDCGKTAEVLGMTELLQKRFR 1325

Query: 1781 HSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRS 1839
               ++W        K   +  V+ ++ +AL SL   +HI  I + A L  +N   D    
Sbjct: 1326 KQPEMWHLIASCFYKIGNRSKVKPLLSKALKSLENKEHIPLIVKFAFLHNRNDDRDEAHI 1385

Query: 1840 MFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1899
            +FE IL+ YPKRTD+WS Y+D  ++ G VD+ R   +RAI   LP + MK LF KY+ +E
Sbjct: 1386 LFEQILTSYPKRTDIWSQYVDMLVKDGLVDVARQTLDRAIVQRLPMRNMKTLFTKYVNFE 1445

Query: 1900 KSVGEEERIEYVKQKAMEYVESTLA 1924
            +  G+ E +  +KQ+A EYVE  LA
Sbjct: 1446 EKHGDREAVRRIKQQAAEYVERQLA 1470



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 160/626 (25%), Positives = 264/626 (42%), Gaps = 64/626 (10%)

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANE 179
           A  +  K    GM + G V +V + +L++ LPG L G   +   + A    L + +E  E
Sbjct: 71  AAPLQFKTAQEGMLVLGCVYKVQKLELLVSLPGRLFGRVPVTAISGAYGKRLQSVVEGGE 130

Query: 180 DNL---LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
                 L  ++ VG+LV   +   D ++      +  LSL    L+  L+ + + EG+V+
Sbjct: 131 GGCCPGLEELYSVGELVYVKIKGKDQER-----WRFELSLDPKELHSELNHKHLVEGLVI 185

Query: 237 TAYVKSIEDHGYILHFGLPSFTGFLP----RNNLAENSG---IDVKPGLLLQGVVRSIDR 289
           +A V+  EDHGY ++ G+ +   FLP    RNN  E  G     V+   L  G       
Sbjct: 186 SATVEEEEDHGYQMNVGIRNVRAFLPTKNVRNNRMEVGGNVHCTVEKVTLANG------- 238

Query: 290 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 349
           T  V+  +  P  + K    D+   +ID L+PG +V+  V+SIL NG+     T F  TV
Sbjct: 239 TATVILKAFKPKELRKL---DVAAANIDSLMPGSVVTFTVESILPNGLQ---GTLFDDTV 292

Query: 350 DIFHLQNTFPTTNWK-NDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPS 403
             F  +N       K   +   K+V ARIL+V P ++ V LTL     N Y + +  P  
Sbjct: 293 PAFVNENMLEKPLSKVASFELFKQVPARILYVMPMTKHVFLTLAIGDSNRYSVADPLP-- 350

Query: 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS-TPAYVTISDV-AEEEVRKLEKKYKEGS 461
              VG +   +KV+      G+   +     +  P YV  S   A  + + +  KY+ GS
Sbjct: 351 ---VGTVLKDAKVMHKCSTGGVWFQLGKKHKALLPRYVLKSRYNANYDEQIVMAKYQIGS 407

Query: 462 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV--DSFGAIVQFP 519
              VR++ +   +         +      F+  D++ G V + +V  +  D  G  V   
Sbjct: 408 LHTVRVIRYEAFDRTLIITDDDATIGSRFFSLDDLRVGDVYECRVTRILDDKRGLAVTLA 467

Query: 520 GG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLA 575
           GG VK +  + H   F      K++     +  R++G+   K + +   H + L KS   
Sbjct: 468 GGRVKGIV-MSHNYRFT-----KQYAPKQSIKMRLIGIDEDKQQALFTNHPEYLRKSAKL 521

Query: 576 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
           IL   A   D+      I++ EK    V F N +     +    +    E       G V
Sbjct: 522 ILDRAAIKPDQKCLGTVISETEKF-FIVAFCNKITAILFKFCRSVTQDSERIDRLKPGSV 580

Query: 636 VKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 695
               +        +I L   + P     D+   LG + +  +  +    V VY++ K   
Sbjct: 581 ELFTVHEVTEDGAKITL---ILPFATGGDN---LGHVSTATITGIFATGVDVYLV-KENE 633

Query: 696 KGTIPTEHLADHLEHATVMKSVIKPG 721
            GT+P E L+D  EH  +++S ++ G
Sbjct: 634 TGTVPPEALSDFPEHNALVQSTLREG 659


>gi|116207588|ref|XP_001229603.1| hypothetical protein CHGG_03087 [Chaetomium globosum CBS 148.51]
 gi|88183684|gb|EAQ91152.1| hypothetical protein CHGG_03087 [Chaetomium globosum CBS 148.51]
          Length = 1766

 Score =  205 bits (522), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 231/890 (25%), Positives = 386/890 (43%), Gaps = 104/890 (11%)

Query: 2   AASSRKSQKKSSKDGP-KFNKASKNQFKNSKKQINDAVEAQDLALPP-----DDDVPVFP 55
            AS+ K  + +++  P K  KAS++   + KK   +       A  P      ++ P+FP
Sbjct: 12  GASASKPPRTATESRPSKRAKASESTKDDGKKGAKEQKSPAKPAAAPVVSKLKEEEPLFP 71

Query: 56  RGGGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKT-----ERKANETVDDLG 108
           RGGG  LT  E+ +I   A+ D  FE    G    N  ++K+      E    E+ D+  
Sbjct: 72  RGGGSVLTPLEQKQISIQAKKDVLFEEQSEGKKGDNSARRKRRKSRAAEAGTGESKDE-- 129

Query: 109 SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
               D +          +  K +  G  + G V  +N  D+VI LP  L G        +
Sbjct: 130 ----DAVK------VEGLNFKRLVQGSLVLGTVCAINALDIVIALPNNLVGHVPITSISE 179

Query: 169 PILDNEIEANEDNL--------------LPTIFHVGQLVSCIVLQ-LDDDKKEIGKRKIW 213
           P+     E+ E                 L ++F +GQ V   V   LD+      KR I 
Sbjct: 180 PLTQRLEESAEKEEDDDEPEDEGVDDVDLKSLFQIGQYVRAYVTSTLDESAPGKSKRHIG 239

Query: 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLAENSG 271
           L+L  +    G+S + V E   L A V S+EDHG+++   +      GFLPR  L ++  
Sbjct: 240 LALDPAHSNTGISEQDVVENCTLMAAVASVEDHGFVMDISIAESKLRGFLPRKQLDKSIP 299

Query: 272 ID-VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQ 330
            + ++PG +L  +V +   + KVV LS+  D +    +   +  +I   +PG      V 
Sbjct: 300 EESLQPGSVLLCIVANKVASGKVVQLSTLSDRIGNPKSSPSEATTIGSFLPGTAADVLVS 359

Query: 331 SILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVG 388
            + ++GV+   + +   T D+ H        +    Y    ++ ARI+   P ++   +G
Sbjct: 360 EVSQHGVVGKVMGHLDVTADLVHSGAGPDGVDIVAQYKVGSRIKARIICTFPNAKLPKLG 419

Query: 389 LTLNPYLLHNRAPPSHVKVGDIY-----------DQSKVVRVDRGLGLLLDIPSTPVSTP 437
           +++ P++L  +   ++    +I            D+  V RV+ G+GL +D+    +  P
Sbjct: 420 ISVLPHILSLKPKTANKDSQEILPTRILAHSATVDECTVQRVEPGIGLYVDVGVEGI--P 477

Query: 438 AYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHS 494
            +V IS V + +V  L      YK GS    R++G+ + +G+     +    E       
Sbjct: 478 GFVHISRVKDGKVDSLFESSGPYKVGSVHPGRVVGYNNFDGMFLLSFEKKVLEQPFLRIE 537

Query: 495 DVKPGMVVKGK----VIAVDSFGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           D+  G VV G     VI  D  G  IV    G+  L P  H+S+  +  P KKF+ G ++
Sbjct: 538 DIPVGAVVPGVVEKLVINQDGLGGLIVNIADGISGLVPEMHLSDVHLQHPEKKFREGMKV 597

Query: 550 VFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
             RVL     R  + +T KKTLV S+   + SY E    L   G I  + +HG  V+FY 
Sbjct: 598 KARVLSTNPARHQLRLTLKKTLVNSEALPIKSYDELAVGLQAPGTIVNVLQHGAIVQFYG 657

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            ++GF P SE+      +P   + VGQ +  + +                          
Sbjct: 658 QLRGFLPVSEMSEAYISDPKEHFRVGQTLALKKL-------------------------- 691

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP---GYEF 724
           ++G LVS  V   T + + V +      K  +P  HL D  +  +  +S +K        
Sbjct: 692 QIGDLVSAKVTQKTEDDIFVELTDNSL-KAVLPVAHLTD--KSVSKTQSALKKIHVNQTL 748

Query: 725 DQLLVLD-NES-SNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            +L+VL+ NE+  ++ LS K SL+ ++++  L + A      + V G+V NI  T  FV+
Sbjct: 749 SELVVLEKNEARRSITLSHKPSLVQASKEGKLLASADDARLGNEVAGFVRNITATAAFVQ 808

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           F G+LT   P+SK     +   S   Y  QS+   I  ++ + GR+ +++
Sbjct: 809 FAGKLTALLPKSKLPRDAQDKPSFGMYKSQSLTVKITSIDKDLGRLVVAI 858



 Score =  197 bits (502), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 265/1139 (23%), Positives = 500/1139 (43%), Gaps = 183/1139 (16%)

Query: 473  LEGLATGILKASAFE----GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG--VKA-- 524
            L G A  +L +   +    G V  H DV   +V  G     D    + Q+  G  +KA  
Sbjct: 349  LPGTAADVLVSEVSQHGVVGKVMGHLDVTADLVHSGA--GPDGVDIVAQYKVGSRIKARI 406

Query: 525  LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEAT 584
            +C  P+          K  K+G  ++  +L +K K      ++ L    LA  ++  E T
Sbjct: 407  ICTFPN---------AKLPKLGISVLPHILSLKPKTANKDSQEILPTRILAHSATVDECT 457

Query: 585  DRLITHGWITKIEKHGCFVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRI 640
             + +  G        G +V     G+ GF   S +    +D   E S  Y VG V   R+
Sbjct: 458  VQRVEPGI-------GLYVDVGVEGIPGFVHISRVKDGKVDSLFESSGPYKVGSVHPGRV 510

Query: 641  MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV---------YVIA 691
            +          LSF  K   V E   +++  +  G V       +V+           IA
Sbjct: 511  VGYNNFDGMFLLSFEKK---VLEQPFLRIEDIPVGAVVPGVVEKLVINQDGLGGLIVNIA 567

Query: 692  KGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSN-LLLSAKYSLINSA 749
             G S G +P  HL+D HL+H    +   + G +    ++  N + + L L+ K +L+NS 
Sbjct: 568  DGIS-GLVPEMHLSDVHLQHP---EKKFREGMKVKARVLSTNPARHQLRLTLKKTLVNS- 622

Query: 750  QQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
            + LP  +   +       G + N+++ G  V+F G+L GF P S        ++S+ Y  
Sbjct: 623  EALPIKSYDELAVGLQAPGTIVNVLQHGAIVQFYGQLRGFLPVS--------EMSEAYI- 673

Query: 809  GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
                                            S  +EHF + + +A+             
Sbjct: 674  --------------------------------SDPKEHFRVGQTLAL------------- 688

Query: 869  VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQA------ 922
             +   IG ++  KV +  +  + V   ++S        H    +  ++ S ++       
Sbjct: 689  -KKLQIGDLVSAKVTQKTEDDIFVELTDNSLKAVLPVAHLTDKSVSKTQSALKKIHVNQT 747

Query: 923  ----AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
                 +L+  +A R + LS K   +   +E      A   +   E +   G  + + A  
Sbjct: 748  LSELVVLEKNEARRSITLSHKPSLVQASKEGKLLASADDARLGNEVA---GFVRNITATA 804

Query: 979  EIVK-ENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
              V+    L   LP+        S    + Q  P       QS+   + ++      GRL
Sbjct: 805  AFVQFAGKLTALLPK--------SKLPRDAQDKPSFGMYKSQSLTVKITSI--DKDLGRL 854

Query: 1038 LLLLKAISETETSSSKRAKKKS--SYD----------VGSLVQAEITEIKPLELRLKFGI 1085
            ++ + ++++ E     +  +K+  S D          +G L +A +   K  +L ++   
Sbjct: 855  VVAIPSVADDEAKKVVKPTEKAINSLDDSITSADDLAIGKLTKARVKSAKETQLNVQIAD 914

Query: 1086 GFHGRIHITEVNDDKSNV--VENLFSNFKIGQTVTARII----AKSNK--PDMKKSF--L 1135
               GRI +++V D   ++   +     FK  + +  R++    A++++  P   +S   +
Sbjct: 915  NIQGRIDVSQVFDKWEDIPDAKRPLKRFKPNEILEVRVLGVHDARNHRFLPITHRSSHSV 974

Query: 1136 WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILD 1195
             ELS KPS L    +   L  ++  + +G     +V  V + +  + +S +++ ++  ++
Sbjct: 975  LELSTKPSDLKADTLPESLSLDK--IEVGSTHVAFVNNVASNYLWVNLSPNVRGRINAME 1032

Query: 1196 SAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            ++ + ++L   ++ F +G A+   VL+++KEK+ + L  R      S +   +S D +Q 
Sbjct: 1033 ASDDLAKLANLEKSFPVGSALQVRVLAVDKEKERVDLSAR-----TSGEAAQLSWDKIQ- 1086

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS-DPLSGYDEGQFVKC 1314
               +G ++  +++K+      ++V++   + G VH  +L +     +PLS +   + V+ 
Sbjct: 1087 ---QGLVLPAKVTKV--NDRQVIVKLSELVAGPVHLADLADDYDDANPLS-HSRNEIVRV 1140

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
             V+E+ ++ +    V LS+R S           L++ +    K + K   L    I++G+
Sbjct: 1141 AVVEVDKSNK---RVRLSMRPS---------KVLNSSLPVKDKEVTKNTKLEVGDIIRGF 1188

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V+NV+ KG F+ L   L A V + NLSD Y++  ++ + + +LV GR++SV     R+E+
Sbjct: 1189 VRNVSDKGLFVSLGGDLVALVKIKNLSDSYLKDWKEHYQVDQLVKGRIISVA--EGRIEL 1246

Query: 1435 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSE 1493
             LK S         +  +++L  G  + G++++VE +G FI I  + NL GLCH SE+++
Sbjct: 1247 NLKPS-VVDKDYVPLTTIADLKEGQTITGKVRKVEEFGAFIEISGSMNLSGLCHRSEMAD 1305

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN-DADNLQMSSEEESDEAI 1551
             +V +  T+Y  G++VK ++LKVD EK+RI+LG+K SYFK+ +AD++ + SE+E   A+
Sbjct: 1306 RNVKDARTLYNEGDRVKARVLKVDLEKKRINLGLKPSYFKDGEADDMDVDSEDEDAGAV 1364



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 79/114 (69%), Gaps = 2/114 (1%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L+ + P+T  ++ERL+   P+SS +WI YMA  + + D+  AR +AERA++TINI+EE E
Sbjct: 1433 LDINGPQTSSDYERLLLGQPDSSELWIAYMASQMQINDLASARQVAERAIKTINIKEETE 1492

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1766
            KLN+W+AY NLE  YG   +E V +VF+RA  Y D ++VH  L  +Y ++ ++K
Sbjct: 1493 KLNVWIAYLNLEVAYGT--DETVEEVFKRACTYNDDQEVHERLASIYIQSGKHK 1544



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 67/110 (60%), Gaps = 7/110 (6%)

Query: 1820 FISQTAILEFKNGVADR--GRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRG 1873
             + + A LEF++   DR  GR++FE +L+ YP++ DLW+  LD E+ +    GDV ++R 
Sbjct: 1641 LLPKFAALEFRSPHGDREQGRTLFENLLATYPRKFDLWNQLLDLEVSVPVEDGDVAVVRD 1700

Query: 1874 LFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922
            LF+R   +  L P++ K  F+++ ++E+  G+ +  E V  +A+E+  + 
Sbjct: 1701 LFDRGSKVKGLKPRQAKAWFRRWAKWEEERGDAKSRERVSARAVEWARAA 1750



 Score = 45.4 bits (106), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 122/576 (21%), Positives = 213/576 (36%), Gaps = 121/576 (21%)

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            K+  +D+ LG L+            V I  VA++E +K+ K  ++   +          +
Sbjct: 843  KITSIDKDLGRLV------------VAIPSVADDEAKKVVKPTEK--AINSLDDSITSAD 888

Query: 475  GLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
             LA G L  +  +    T  +V+    ++G++     F      P               
Sbjct: 889  DLAIGKLTKARVKSAKETQLNVQIADNIQGRIDVSQVFDKWEDIP--------------- 933

Query: 535  EIVKPGKKFKVGAELVFRVLGVKSKR----ITVTHKKTLVKSKLAILSSYAEATDRLITH 590
            +  +P K+FK    L  RVLGV   R    + +TH+ +    +L+   S  +A D L   
Sbjct: 934  DAKRPLKRFKPNEILEVRVLGVHDARNHRFLPITHRSSHSVLELSTKPSDLKA-DTLPES 992

Query: 591  GWITKIEKHGCFVRFYNGV-----------------QGFAPRSELGLDPGCEPSSMYHVG 633
              + KIE     V F N V                        +L      E S  + VG
Sbjct: 993  LSLDKIEVGSTHVAFVNNVASNYLWVNLSPNVRGRINAMEASDDLAKLANLEKS--FPVG 1050

Query: 634  QVVKCRIMSSIPASRRINLSFMMKPTRVSED------DLVKLGSLVSGVVDVVTPNAVVV 687
              ++ R+++      R++LS      R S +      D ++ G ++   V  V    V+V
Sbjct: 1051 SALQVRVLAVDKEKERVDLS-----ARTSGEAAQLSWDKIQQGLVLPAKVTKVNDRQVIV 1105

Query: 688  ----YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSN--LLLSA 741
                 V    +          A+ L H+           E  ++ V++ + SN  + LS 
Sbjct: 1106 KLSELVAGPVHLADLADDYDDANPLSHSR---------NEIVRVAVVEVDKSNKRVRLSM 1156

Query: 742  KYS-LINSAQQLPSDASHIHPNS------VVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
            + S ++NS+  LP     +  N+      ++ G+V N+ + G FV   G L         
Sbjct: 1157 RPSKVLNSS--LPVKDKEVTKNTKLEVGDIIRGFVRNVSDKGLFVSLGGDLVALVKIKNL 1214

Query: 795  VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 854
             D    D  + Y V Q V+  I+ V    GRI L+LK         S + + ++    IA
Sbjct: 1215 SDSYLKDWKEHYQVDQLVKGRIISVAE--GRIELNLK--------PSVVDKDYVPLTTIA 1264

Query: 855  MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV 914
             L+                 G  I GKV +  +FG  +      ++ G     ++A   V
Sbjct: 1265 DLKE----------------GQTITGKVRKVEEFGAFIEISGSMNLSGLCHRSEMADRNV 1308

Query: 915  ES-------GSVIQAAILDVAKAERLVDLSLKTVFI 943
            +        G  ++A +L V   ++ ++L LK  + 
Sbjct: 1309 KDARTLYNEGDRVKARVLKVDLEKKRINLGLKPSYF 1344


>gi|408391805|gb|EKJ71173.1| hypothetical protein FPSE_08679 [Fusarium pseudograminearum CS3096]
          Length = 1784

 Score =  204 bits (520), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/289 (39%), Positives = 180/289 (62%), Gaps = 11/289 (3%)

Query: 1620 DEAKTIDEKNNRHAKKKEKEEREQ-EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1678
            DE ++  E+  + A+K +K+ R + E++      L+ + P+T  ++ERL+   P+SS +W
Sbjct: 1459 DEPESESEEQVKDAEKPKKKRRTRDEVQIDRTAELDTNGPQTSSDYERLLLGQPDSSELW 1518

Query: 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1738
            I Y+AF + +A++ KAR +AERA++TINIREE EKLN+WVAY NLE  YG   ++ V +V
Sbjct: 1519 IAYLAFQMQVAELSKAREVAERAIKTINIREETEKLNVWVAYLNLEVAYGT--KQTVEEV 1576

Query: 1739 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LK 1795
            F+RA QY D +++H  L  +Y ++E+ K AD L   M+KKF   S  VWL     L   +
Sbjct: 1577 FKRACQYNDQQEIHERLASVYIQSERLKDADALFETMVKKFGAKSPSVWLNYAHFLHATR 1636

Query: 1796 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTD 1853
             + +G +A++ RA   L +  H   +++ A LEF+  NG  +RGR+MF G+L  +PK+ D
Sbjct: 1637 NKPDGARALLPRATQQLGKSHHTNLMTRFAALEFRSPNGEPERGRTMFAGLLEAFPKKGD 1696

Query: 1854 LWSIYLDQEIRLGDVD--LIRGLF-ERAISLSLPPKKMKFLFKKYLEYE 1899
            +WS  LD E+ L + D  +IR +F ER     L P + +  F+++ ++E
Sbjct: 1697 IWSQRLDLELGLSEPDPVIIRDVFKERTRVQGLKPLQAEKWFRRWTDWE 1745



 Score =  194 bits (492), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 210/806 (26%), Positives = 350/806 (43%), Gaps = 79/806 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLG 108
           +D P+FPRGG   LT  E+ +I+ E  A+    E        +KKKK +         + 
Sbjct: 60  EDEPMFPRGGASILTPLEQKKINIEAKADAMRDEEFNTATKDQKKKKRKTALKGGDKKVD 119

Query: 109 SLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAAD 165
              GD    +       ++ KN+  G  +   V  +N  D+ + LP  L G   +   + 
Sbjct: 120 KKTGDE---EQAIRVESLSFKNLVKGSLVLAQVTRINNLDVEVALPNNLTGHISIVAVSQ 176

Query: 166 ALDPILDNEIEANEDNL-----------LPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIW 213
            L   L+NE    +D+            L +IF VGQ L + +V  +++     GKR+I 
Sbjct: 177 QLTERLENETADKDDDEEEEAEDDEGIDLKSIFAVGQYLRAYVVSTVEESTTGKGKRRIE 236

Query: 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID 273
           LSLR S    GL  + V     + A V S++D G+++  G+ +   FL R+ +  +  ID
Sbjct: 237 LSLRPSEANTGLEKDDVVPNATVMASVASVQDRGFVMDTGIENLGAFLSRSEV--DKTID 294

Query: 274 ---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQ 330
              ++PG +    V S     K+  LS     +           +I   +PG M    V 
Sbjct: 295 EKRLQPGAVFLCQVISKGANGKIAQLSLQQKKIGNPKNLPTDATTIKTFLPGTMTDVLVS 354

Query: 331 SILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVG 388
           +    G+    + +   T DI H        +    Y    +  AR++   P +R   +G
Sbjct: 355 NTDRRGLAGKIMGHLDVTADIIHSGVGPAGVSLDTAYKIGSRAKARVICNFPGAREPKLG 414

Query: 389 LTLNPYLL------------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 436
           ++L P++               + P   + +  + +   V  V+  +GL +DI    +S 
Sbjct: 415 ISLLPHITTLEKKRSTKSADSKKNPTQVLPISSLVETCTVRHVEADIGLFVDIGIPGLS- 473

Query: 437 PAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
             +V IS V + +V  L +    YK GS  + R++G+  ++GL     + S  E      
Sbjct: 474 -GFVHISRVKDGKVEALYESSGPYKAGSEHKGRVVGYNEIDGLFQISFEKSVLEQEYLRL 532

Query: 494 SDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAE 548
            DV  G VV  ++  + VD  G    IV+   G+    P  H+S+  +  P KKF+ G +
Sbjct: 533 EDVPLGAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHLSDVRLQHPEKKFRQGMK 592

Query: 549 LVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           +  RVL   +  K++ +T KKT+V S+  ++ SY E T  +   G I K+   G  ++F+
Sbjct: 593 VKARVLSTNLDKKQMRLTLKKTIVNSEAPVVKSYDEVTVGMQIPGTIIKVLSSGAIIQFF 652

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTR 660
             VQGF P SE+      +P   + +GQVV   ++   P  +R+ +S      F ++   
Sbjct: 653 GTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSCKDPSAFGLEKQN 712

Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
             +   ++LG +VS  V   T + V V  +A    K TI   HL D        KS  K 
Sbjct: 713 ALKK--LQLGDVVSAKVTQKTEDQVFVE-LADSQLKATISVGHLTD--------KSNSKN 761

Query: 721 GYEFDQLLV-----------LDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPNSVVHG 767
            Y F ++ V            D+    ++LS K SL+++++   L +         +V G
Sbjct: 762 QYAFKRIAVGQTLSDLVIIEKDDNRRVIVLSHKPSLLDASKNRTLLTSFEMAKEGKIVAG 821

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSK 793
           +V NI  T  FV+F G LT   P+++
Sbjct: 822 FVRNITVTAVFVQFAGNLTALLPKAR 847



 Score =  194 bits (492), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 224/924 (24%), Positives = 427/924 (46%), Gaps = 136/924 (14%)

Query: 667  VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
            V LG++V+  ++  VV    V  ++  +A+G S G +P +HL+D  L+H         P 
Sbjct: 535  VPLGAVVTCEIEKVVVDERGVSGLIVKVAEGIS-GFVPEQHLSDVRLQH---------PE 584

Query: 722  YEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
             +F Q       +L  + +   + L+ K +++NS   +      +     + G +  ++ 
Sbjct: 585  KKFRQGMKVKARVLSTNLDKKQMRLTLKKTIVNSEAPVVKSYDEVTVGMQIPGTIIKVLS 644

Query: 775  TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            +G  ++F G + GF P S+  +    D  + + +GQ V  ++LDV  E  R+ +S K   
Sbjct: 645  SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSCKDPS 704

Query: 835  CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
                        F LE++ A+              +   +G V+  KV +  +  V V  
Sbjct: 705  A-----------FGLEKQNAL--------------KKLQLGDVVSAKVTQKTEDQVFVEL 739

Query: 895  EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
             + S +   I+   L   T +S S  Q A   +A  + L DL    V I    E + NR+
Sbjct: 740  AD-SQLKATISVGHL---TDKSNSKNQYAFKRIAVGQTLSDL----VII----EKDDNRR 787

Query: 955  A---QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVS-------- 1003
                  K    +ASK    ++T+    E+ KE  +V      N ++    V         
Sbjct: 788  VIVLSHKPSLLDASK----NRTLLTSFEMAKEGKIVAGFVR-NITVTAVFVQFAGNLTAL 842

Query: 1004 ------DYNTQKFPQKQFLNGQSV-IATVMALPSSSTAGRLLLLLKAISET-ETSSSKRA 1055
                    + Q  P       QS+ +  V  +P      R+++      E+ E +   +A
Sbjct: 843  LPKARLPADVQDQPDFGMHKHQSIEVKIVSVIPDHQ---RIVVAPADFDESAELAKKGKA 899

Query: 1056 KKKSS----YDVGSLVQAEITEIKPLELRLKFGIG-FHGRIHITEVNDDKSNVVE--NLF 1108
              K +     ++G++  A+IT +K  +L ++       GRI +++V D   ++++  +  
Sbjct: 900  SDKPAATDDIELGTITNAKITSVKDTQLNVQLANSKVQGRIDVSQVFDKWEDILDPKDPL 959

Query: 1109 SNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSMLTVSEIGSKLLFEECD 1160
              +   Q ++ R++    AK +K  P   +S   + EL+ KPS +    +   L  E  D
Sbjct: 960  DKYNKKQNISVRVMGVHSAKDHKFLPFSHRSLHSVLELTAKPSDIEAKTL-KPLSLE--D 1016

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            V +G     +V     +   + +S  ++ ++  ++++ + S+L + +  F IG A+   V
Sbjct: 1017 VKVGDTHVAFVNNSSPQHLWVNLSPSVRGRINAMEASDDLSQLNDLEANFPIGSALKVRV 1076

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
             +++     L L         S ++ + S+    + + +  ++ GR++K+      ++V+
Sbjct: 1077 TAVDVRNNRLDL---------SARSSNSSDAVTWSVLKQNMVLPGRVTKV--NERQVLVK 1125

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1340
            +   + G VH  ++ +   +       +G  V+  V+E+  + +    + LS R S   M
Sbjct: 1126 LSEAVSGPVHLPDMTDDFDTINTLNQRKGDIVRVSVVELDSSNK---RLRLSTRPSRI-M 1181

Query: 1341 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1400
            SST        +    K +  +  L    IV+G+VKNV+ KG F++L  ++ A V +SNL
Sbjct: 1182 SST--------LPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVTALVKISNL 1233

Query: 1401 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNLSNLHVG 1458
            SD Y++  +  F + +LV GRV++V+ L++ VE++LK+S  D      +  N++     G
Sbjct: 1234 SDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQE---G 1290

Query: 1459 DIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
             +V G++++VE +G FI I+ + N+ GLCH S+++E  V +   +Y+ G+ VK ++L VD
Sbjct: 1291 QVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSVD 1350

Query: 1518 KEKRRISLGMKSSYFKN---DADN 1538
             EKRR++ G+K S F++   D DN
Sbjct: 1351 AEKRRVAFGLKPSLFEDVDSDMDN 1374



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 136/298 (45%), Gaps = 26/298 (8%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            G +V   I K++    GV GL+V++   + G V    L ++ +  P   + +G  VK +V
Sbjct: 538  GAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHLSDVRLQHPEKKFRQGMKVKARV 597

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L  +   +    + L+L+ ++              V++    ++  ++++  M + G + 
Sbjct: 598  LSTNLDKK---QMRLTLKKTI--------------VNSEAPVVKSYDEVTVGMQIPGTII 640

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             V S G  I     +   + +S +S+ Y++ P++ F IG++V+  VL V+P  KR+ V+ 
Sbjct: 641  KVLSSGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSC 700

Query: 1437 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496
            K  D       + N L  L +GD+V  ++ +     +F+ + ++ L     V  L++   
Sbjct: 701  K--DPSAFGLEKQNALKKLQLGDVVSAKVTQKTEDQVFVELADSQLKATISVGHLTDKSN 758

Query: 1497 DNIETIYR---AGEKVK-VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
               +  ++    G+ +  + I++ D  +R I L  K S      +   ++S E + E 
Sbjct: 759  SKNQYAFKRIAVGQTLSDLVIIEKDDNRRVIVLSHKPSLLDASKNRTLLTSFEMAKEG 816



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 159/364 (43%), Gaps = 46/364 (12%)

Query: 223  KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGI 272
            K LSLE V+ G    A+V +       ++   PS  G +            N+L  N  I
Sbjct: 1010 KPLSLEDVKVGDTHVAFVNNSSPQHLWVNLS-PSVRGRINAMEASDDLSQLNDLEANFPI 1068

Query: 273  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
                G  L+  V ++D     + LS+     S  VT  +  +  ++++PG     RV  +
Sbjct: 1069 ----GSALKVRVTAVDVRNNRLDLSARSSNSSDAVTWSV--LKQNMVLPG-----RVTKV 1117

Query: 333  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK--VNARILFVDPTSRAVGLT 390
             E  V++      +G V +  + + F T N     NQ K   V   ++ +D +++ + L+
Sbjct: 1118 NERQVLVKLSEAVSGPVHLPDMTDDFDTIN---TLNQRKGDIVRVSVVELDSSNKRLRLS 1174

Query: 391  LNP-YLLHNRAPPSHVKVGDI--YDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVT 441
              P  ++ +  P    ++ D+   D   +VR       D+GL +LL    T     A V 
Sbjct: 1175 TRPSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVT-----ALVK 1229

Query: 442  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKP 498
            IS++++  +++ +  ++    V+ R++    L       LK+S  +       T++D++ 
Sbjct: 1230 ISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQE 1289

Query: 499  GMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            G VV GKV  V+ FGA +   G   V  LC    M+E  +    K +K G  +  RVL V
Sbjct: 1290 GQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSV 1349

Query: 557  KSKR 560
             +++
Sbjct: 1350 DAEK 1353



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 6/170 (3%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S +  G +V+G V  V   G  V   G V AL  + ++S+  I +    F+V   +  RV
Sbjct: 1196 SQLDAGDIVRGFVKNVSDKGLFVLLGGQVTALVKISNLSDRYIKEWKDHFQVDQLVKGRV 1255

Query: 554  LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGV 609
            + V   ++ + ++ K ++V       ++Y +  +  +  G + K+E+ G F+     + V
Sbjct: 1256 VAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQEGQVVTGKVRKVEEFGAFILIDGSDNV 1315

Query: 610  QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
             G   RS++      + + +Y  G  VK R++S     RR+  +F +KP+
Sbjct: 1316 SGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSVDAEKRRV--AFGLKPS 1363



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 125/288 (43%), Gaps = 26/288 (9%)

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA-- 1123
            ++   +T++   ++ +K      G +H+ ++ DD  + +  L  N + G  V   ++   
Sbjct: 1109 VLPGRVTKVNERQVLVKLSEAVSGPVHLPDMTDD-FDTINTL--NQRKGDIVRVSVVELD 1165

Query: 1124 KSNKPDMKKSFLWELSIKPS--MLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
             SNK          LS +PS  M +   +  K + +   +  G  V G+V  V ++   +
Sbjct: 1166 SSNK-------RLRLSTRPSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFV 1218

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
             +   + A + I  S      ++E++  F + + V G V++++   KL R V    +  +
Sbjct: 1219 LLGGQVTALVKI--SNLSDRYIKEWKDHFQVDQLVKGRVVAVD---KLTRHVEMSLKSSV 1273

Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
             D+  D +       I EG +V G++ K+      +++    ++ G  H +++    V D
Sbjct: 1274 VDE--DYTPPTTYNDIQEGQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKD 1331

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL--DGMSSTNSSD 1347
                Y EG  VK +VL +    R    V   L+ SL  D  S  ++SD
Sbjct: 1332 ATKLYKEGDAVKARVLSVDAEKR---RVAFGLKPSLFEDVDSDMDNSD 1376



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 103/466 (22%), Positives = 187/466 (40%), Gaps = 69/466 (14%)

Query: 1079 LRLKFGI-GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1137
            L +  GI G  G +HI+ V D K   +      +K G     R++   N+ D     L++
Sbjct: 463  LFVDIGIPGLSGFVHISRVKDGKVEALYESSGPYKAGSEHKGRVVG-YNEIDG----LFQ 517

Query: 1138 LSIKPSMLTVS-------EIGSKLLFEECDVSIGQR-VTGYVYKVDNEWALLTISRHLKA 1189
            +S + S+L           +G+ +  E   V + +R V+G + KV    +     +HL  
Sbjct: 518  ISFEKSVLEQEYLRLEDVPLGAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHL-- 575

Query: 1190 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1249
                         LQ  +++F  G  V   VLS N +KK +RL L+        KT+  S
Sbjct: 576  ---------SDVRLQHPEKKFRQGMKVKARVLSTNLDKKQMRLTLK--------KTIVNS 618

Query: 1250 NDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
               +     E   G  + G I K+LS   G ++Q    + G +  +E+    + DP   +
Sbjct: 619  EAPVVKSYDEVTVGMQIPGTIIKVLS--SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHF 676

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRS-SLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1365
              GQ V   VL++    +    + +S +  S  G+   N+                ++ L
Sbjct: 677  RIGQVVSIHVLDVQPEDK---RLVVSCKDPSAFGLEKQNA----------------LKKL 717

Query: 1366 SPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
                +V   V   T    F+ L+  +L A + + +L+D    + + ++   ++  G+ LS
Sbjct: 718  QLGDVVSAKVTQKTEDQVFVELADSQLKATISVGHLTDK--SNSKNQYAFKRIAVGQTLS 775

Query: 1425 ----VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---GDIVIGQIKRVESYGLFITI 1477
                +E    R  + L    S   +      L++  +   G IV G ++ +    +F+  
Sbjct: 776  DLVIIEKDDNRRVIVLSHKPSLLDASKNRTLLTSFEMAKEGKIVAGFVRNITVTAVFVQF 835

Query: 1478 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
               NL  L   + L  D  D  +      + ++VKI+ V  + +RI
Sbjct: 836  AG-NLTALLPKARLPADVQDQPDFGMHKHQSIEVKIVSVIPDHQRI 880


>gi|342879204|gb|EGU80461.1| hypothetical protein FOXB_09018 [Fusarium oxysporum Fo5176]
          Length = 1790

 Score =  204 bits (518), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 120/300 (40%), Positives = 181/300 (60%), Gaps = 15/300 (5%)

Query: 1628 KNNRHAKKKEKEEREQEI-RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1686
            K+N   KKK +   E ++ R AE   L+ + P+T  ++ERL+   P+SS +WI YMAF +
Sbjct: 1474 KDNEKTKKKRRNRDEIQVDRTAE---LDANGPQTSSDYERLLLGQPDSSELWIAYMAFQM 1530

Query: 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1746
             ++++ KAR +AERA+++INIREE EKLN+WVAY NLE  YG   ++ V +VF+RA QY 
Sbjct: 1531 QVSELSKAREVAERAIKSINIREETEKLNVWVAYLNLEVAYGT--KQTVEEVFKRACQYN 1588

Query: 1747 DPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQA 1803
            D ++VH  L  +Y ++E+ K AD L   M+KKF   S  VWL     L   +   +  +A
Sbjct: 1589 DAQEVHERLASIYIQSEKLKDADALFETMVKKFGAKSPNVWLNYAHFLHATRNDPDRARA 1648

Query: 1804 VVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861
            ++ RA   L        +S+ A LEF+  NG  +RGR+MF  +L+ YPK+ DLWS  LD 
Sbjct: 1649 LLPRATQQLGDRHSQTLVSRFAALEFRSPNGEPERGRTMFATLLAAYPKKGDLWSQLLDL 1708

Query: 1862 EIRLGDVD--LIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
            EI L D D   IR +F+R   +  L PK  +  F+++ ++E+ +  + + + V  KA E+
Sbjct: 1709 EIGLSDADPTAIRDVFDRRTRVKGLKPKMAEKWFRRWADWEEKLDPKGK-DKVMAKAQEW 1767



 Score =  194 bits (492), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 218/841 (25%), Positives = 373/841 (44%), Gaps = 78/841 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEV------DAEFEAVERGLHKKNKKKKKKTERKANE 102
           +D P+FPRGG   LT  E+ +I  E       D EF    +   KK +K   K ++K+++
Sbjct: 59  EDEPMFPRGGASVLTPLEQKKIQLEAKADAMRDEEFNTGNKVQKKKKRKTALKGDKKSDK 118

Query: 103 TVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG--- 159
                      G   +  R  + ++ KN+  G  +   V  +N  DL + LP  L G   
Sbjct: 119 KT---------GEEEQAVRIES-LSFKNLVKGSLVLAQVTRINNLDLEVALPNNLTGHIS 168

Query: 160 LARAADALDPILDNEIEANEDNL-----------LPTIFHVGQLVSCIVLQLDDDKKE-I 207
           +   +  L   L+NE    +D             L +IF VGQ +   V    ++     
Sbjct: 169 IVAMSQQLTDRLENETAEKDDEEDDEAEDDEGIDLKSIFAVGQYLRAYVASTAEESTAGK 228

Query: 208 GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA 267
            KR+I LSLR +    GL+ + V     + A + S+ED G+++  G+ +   FL ++ + 
Sbjct: 229 SKRRIELSLRPNEANTGLAKDDVVPNTTVMASIVSVEDRGFVMDTGIENLGAFLAKSEVD 288

Query: 268 ENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMM 324
           +N  ID   ++PG +    V S     K+  LS     +    +      +I+  +PG M
Sbjct: 289 KN--IDEQRLQPGAVFLCQVTSKGANGKIAQLSLQQKKIGNPKSVPADATTINTFLPGTM 346

Query: 325 VSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 384
               + +    G+    + +   T DI          +    Y    +V AR++   P +
Sbjct: 347 ADVLISNTDRRGLSGKIMGHLDVTADIIQSGAGPAGVSLDTAYKIGSRVKARVICNFPGA 406

Query: 385 R--AVGLTLNPYL--LHNRAP---------PSHV-KVGDIYDQSKVVRVDRGLGLLLDIP 430
           R   +G++L P++  L  + P         P+ V  +  + +   V  V+  +GL +DI 
Sbjct: 407 REPKLGISLLPHITALEKKRPTKSTDSKKNPTQVLPISSLVETCTVRHVEPDIGLFVDIG 466

Query: 431 STPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFE 487
              +S   +V IS V + +V  L +    YK  S  + R++G+  ++GL     + S  E
Sbjct: 467 IPGLS--GFVHISRVKDGKVEALYEASGPYKVDSEHKGRVIGYNEMDGLFQISFEKSVLE 524

Query: 488 GLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPGKK 542
                  DV  G VV   +  + +D  G    +V+   G+    P  H S+ ++  P KK
Sbjct: 525 QQYLRLEDVPIGAVVTCNIEKVLIDEKGVSGLVVKVAEGITGFVPEQHFSDVKLQHPEKK 584

Query: 543 FKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
           F+ G ++  RVL   +  K++ +T KKTLV S+  ++ +Y EA+  +   G I KI+  G
Sbjct: 585 FRQGMKVKARVLSTNLSKKQMRLTLKKTLVNSEAPVIKAYEEASVGMQIPGTIIKIQSSG 644

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
             ++F+  VQGF P SE+      +P   +  GQVV   ++   P S+R+ +S    P+ 
Sbjct: 645 AIIQFFGAVQGFLPISEMSEAYIKDPKEHFRTGQVVSVHVLDVEPESKRLVVS-CKDPSA 703

Query: 661 VSEDDL-----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATV 713
              D       ++LG +VS  V   T + V V  +A    K  +P  HL D    ++   
Sbjct: 704 FGLDKQNALKKLQLGDIVSAKVTQKTEDQVFVE-LADAQLKAILPVGHLTDKSTSKNQYA 762

Query: 714 MKSVIKPGYEFDQLLVLDNESSN-LLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVC 770
           +K +       D ++V  NE+   ++LS K SL+++ +   L +         +V G+V 
Sbjct: 763 LKRIAVGQTLSDLVIVEKNENRRAVILSHKPSLVSAGKDKTLLTSFEDAKEGKIVAGFVR 822

Query: 771 NIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSK-TYYVGQSVRSNILDVNSETGRITL 828
           NI  T  FV+F G +    P+++ A D Q  DL     +  QS+   I+ V  +  RI +
Sbjct: 823 NITVTAVFVQFGGAVNALLPKARLAADIQ--DLPDFGMHKHQSIEVKIVSVIPDHKRIVV 880

Query: 829 S 829
           +
Sbjct: 881 A 881



 Score =  181 bits (459), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 257/1110 (23%), Positives = 473/1110 (42%), Gaps = 164/1110 (14%)

Query: 485  AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA--LCPLPHMSEFEIVKPGKK 542
               G +  H DV   ++  G   A  S     +    VKA  +C  P   E         
Sbjct: 358  GLSGKIMGHLDVTADIIQSGAGPAGVSLDTAYKIGSRVKARVICNFPGAREP-------- 409

Query: 543  FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH-GC 601
             K+G  L+  +  ++ KR T +       +++  +SS  E          +  +E   G 
Sbjct: 410  -KLGISLLPHITALEKKRPTKSTDSKKNPTQVLPISSLVETCT-------VRHVEPDIGL 461

Query: 602  FVRF-YNGVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
            FV     G+ GF   S +    ++   E S  Y V    K R++          +SF   
Sbjct: 462  FVDIGIPGLSGFVHISRVKDGKVEALYEASGPYKVDSEHKGRVIGYNEMDGLFQISF--- 518

Query: 658  PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS----------KGTIPTEHLAD- 706
               V E   ++L  +  G V  VT N   V +  KG S           G +P +H +D 
Sbjct: 519  EKSVLEQQYLRLEDVPIGAV--VTCNIEKVLIDEKGVSGLVVKVAEGITGFVPEQHFSDV 576

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESS-NLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
             L+H    +   + G +    ++  N S   + L+ K +L+NS   +            +
Sbjct: 577  KLQHP---EKKFRQGMKVKARVLSTNLSKKQMRLTLKKTLVNSEAPVIKAYEEASVGMQI 633

Query: 766  HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
             G +  I  +G  ++F G + GF P S+  +    D  + +  GQ V  ++LDV  E+ R
Sbjct: 634  PGTIIKIQSSGAIIQFFGAVQGFLPISEMSEAYIKDPKEHFRTGQVVSVHVLDVEPESKR 693

Query: 826  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
            + +S K               F L+++ A+              +   +G ++  KV + 
Sbjct: 694  LVVSCKDPSA-----------FGLDKQNAL--------------KKLQLGDIVSAKVTQK 728

Query: 886  NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945
             +  V V   + + +   +    L   T +S S  Q A+  +A  + L DL +       
Sbjct: 729  TEDQVFVELAD-AQLKAILPVGHL---TDKSTSKNQYALKRIAVGQTLSDLVI------- 777

Query: 946  FREANSNRQA---QKKKRKREASKDLGVHQTVNAIVEIVKENYLVLS------------- 989
              E N NR+A     K     A KD    +T+    E  KE  +V               
Sbjct: 778  -VEKNENRRAVILSHKPSLVSAGKD----KTLLTSFEDAKEGKIVAGFVRNITVTAVFVQ 832

Query: 990  --------LPEYNHSIGYASVSDYNTQKFPQKQFLNGQSV-IATVMALPSSSTAGRLLLL 1040
                    LP+   +     + D+   K         QS+ +  V  +P      R+++ 
Sbjct: 833  FGGAVNALLPKARLAADIQDLPDFGMHKH--------QSIEVKIVSVIPDHK---RIVVA 881

Query: 1041 LKAISET-----ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHIT 1094
                 E+     +  +S +       + G++ +A+IT IK  +L ++       GRI ++
Sbjct: 882  PADFDESAELDKKAKASDKPAASDDIEFGTVAKAKITSIKDTQLNVQLVDSKVQGRIDVS 941

Query: 1095 EVNDDKSNVVE--NLFSNFKIGQTVTARII----AKSNK--PDMKKSF--LWELSIKPSM 1144
            ++ D   ++ +  +    +   QTV+ R++    AK ++  P   +S   + EL+ KPS 
Sbjct: 942  QIFDKWEDIPDPKDPLDKYHKKQTVSVRVMGVHSAKDHRFLPFSHRSLHSVLELTAKPSD 1001

Query: 1145 LTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQ 1204
            L    +   L  E  ++ +G     +V     +   + +S  ++ ++  ++++ + S+L 
Sbjct: 1002 LKAKTL-EPLSLE--NLKVGDTYVAFVNNSSPQHLWVNLSPSVRGRISAMEASDDLSQLN 1058

Query: 1205 EFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG 1264
            + +  F +G A+   V  ++   K L L  R      S +TV  S       + +  ++ 
Sbjct: 1059 DLEANFPVGSALKVRVTGVDARNKRLDLSARSSS---SSETVTWSA------LKQNMVLP 1109

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
            GR++K+      ++V++   + G VH  ++ +         +D    +K K  EI R   
Sbjct: 1110 GRVTKV--NERQVLVKLSELVSGPVHLPDMAD--------DFDTVNTLKQKKGEIVRVS- 1158

Query: 1325 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1384
                VEL   +    +S+  S  +S+ +    K +  +  L    IV+G+VKNV+ KG F
Sbjct: 1159 ---IVELDASNKRLRLSTRPSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLF 1215

Query: 1385 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1444
            ++L  ++ A V +SNLSD Y++  +  F I +LV GRV++V+  ++ VE++LK+S     
Sbjct: 1216 VLLGGQVTALVKISNLSDRYLKEWKDHFQIDQLVKGRVIAVDKQTRHVELSLKSSVVDED 1275

Query: 1445 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIY 1503
                I   +++  G +V G++++VE +G FI I+N+ N+ GLCH S+++E+ V +   +Y
Sbjct: 1276 YTPPI-TYNDIKEGQVVTGKVRKVEEFGAFILIDNSDNVSGLCHRSQMAENPVKDATKLY 1334

Query: 1504 RAGEKVKVKILKVDKEKRRISLGMKSSYFK 1533
            + G+ VK ++L+VD  KRR++ G+K S F+
Sbjct: 1335 KEGDAVKARVLEVDINKRRVTFGLKPSLFE 1364



 Score = 77.0 bits (188), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 136/298 (45%), Gaps = 26/298 (8%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            G +V   I K+L    GV GLVV++   + G V      ++ +  P   + +G  VK +V
Sbjct: 536  GAVVTCNIEKVLIDEKGVSGLVVKVAEGITGFVPEQHFSDVKLQHPEKKFRQGMKVKARV 595

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L  + + +    + L+L+ +L              V++    ++  E+ S  M + G + 
Sbjct: 596  LSTNLSKK---QMRLTLKKTL--------------VNSEAPVIKAYEEASVGMQIPGTII 638

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             + S G  I     +   + +S +S+ Y++ P++ F  G++V+  VL VEP SKR+ V+ 
Sbjct: 639  KIQSSGAIIQFFGAVQGFLPISEMSEAYIKDPKEHFRTGQVVSVHVLDVEPESKRLVVSC 698

Query: 1437 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496
            K  D       + N L  L +GDIV  ++ +     +F+ + +  L  +  V  L++   
Sbjct: 699  K--DPSAFGLDKQNALKKLQLGDIVSAKVTQKTEDQVFVELADAQLKAILPVGHLTDKST 756

Query: 1497 DNIETIYR---AGEKVK-VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
               +   +    G+ +  + I++ ++ +R + L  K S      D   ++S E++ E 
Sbjct: 757  SKNQYALKRIAVGQTLSDLVIVEKNENRRAVILSHKPSLVSAGKDKTLLTSFEDAKEG 814



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 165/375 (44%), Gaps = 52/375 (13%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGIDV 274
            LSLE ++ G    A+V +       ++   PS  G +            N+L  N  +  
Sbjct: 1010 LSLENLKVGDTYVAFVNNSSPQHLWVNLS-PSVRGRISAMEASDDLSQLNDLEANFPV-- 1066

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
              G  L+  V  +D   K + LS+   + S+ VT     +  ++++PG     RV  + E
Sbjct: 1067 --GSALKVRVTGVDARNKRLDLSARSSSSSETVT--WSALKQNMVLPG-----RVTKVNE 1117

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK--VNARILFVDPTSRAVGLTLN 392
              V++      +G V +  + + F T N      Q K   V   I+ +D +++ + L+  
Sbjct: 1118 RQVLVKLSELVSGPVHLPDMADDFDTVN---TLKQKKGEIVRVSIVELDASNKRLRLSTR 1174

Query: 393  P-YLLHNRAPPSHVKVGDI--YDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVTIS 443
            P  ++ +  P    ++ D+   D   +VR       D+GL +LL    T     A V IS
Sbjct: 1175 PSRIMSSTLPVKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVT-----ALVKIS 1229

Query: 444  DVAEEEVRKLEKKYKEGSCVRVRILGF----RHLE-GLATGILKASAFEGLVFTHSDVKP 498
            ++++  +++ +  ++    V+ R++      RH+E  L + ++       +  T++D+K 
Sbjct: 1230 NLSDRYLKEWKDHFQIDQLVKGRVIAVDKQTRHVELSLKSSVVDEDYTPPI--TYNDIKE 1287

Query: 499  GMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            G VV GKV  V+ FGA  ++     V  LC    M+E  +    K +K G  +  RVL V
Sbjct: 1288 GQVVTGKVRKVEEFGAFILIDNSDNVSGLCHRSQMAENPVKDATKLYKEGDAVKARVLEV 1347

Query: 557  --KSKRITVTHKKTL 569
                +R+T   K +L
Sbjct: 1348 DINKRRVTFGLKPSL 1362


>gi|66359862|ref|XP_627109.1| RRP5 like protein involved in rRNA biogenesis with 7 S1 domains and 5
            HAT repeats [Cryptosporidium parvum Iowa II]
 gi|46228533|gb|EAK89403.1| RRP5 like protein involved in rRNA biogenesis with 7 S1 domains and 5
            HAT repeats [Cryptosporidium parvum Iowa II]
          Length = 2002

 Score =  203 bits (517), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 200/759 (26%), Positives = 348/759 (45%), Gaps = 134/759 (17%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            GL+VQ+    +GR+   EL +  + +PL+        K KV    + +        S + 
Sbjct: 1256 GLIVQLSNKSFGRISVLELDDDKIDNPLN------LEKFKVGGTIQGIIIGDLRNNSKKK 1309

Query: 1336 SLDGMSSTNSSDLS---------------TDVDTPGKHLEKIEDLSP---NMIVQGYVKN 1377
             +  +    SS L                 D+      L++IE  S      I+ GYV N
Sbjct: 1310 RIVSLGGEKSSKLKYAQIDFEISSRISRIRDILDKKDELKEIESFSQVKVGSILSGYVCN 1369

Query: 1378 VTSKGCFIMLSRKLDAKVLLSNLSDGYV--ESPEKEFPIGKLVAGRVL-SVEPLSKRVEV 1434
               +G F+ + R+L  ++ L  L+ G +  E   + F IGK +   V+ ++    K+V++
Sbjct: 1370 SGKEGVFVRVGRELVGRIKLRELTSGTITPEEASRRFFIGKFINQMVVVNINKDEKKVDL 1429

Query: 1435 T----------LKTSDSRTASQSE-----------------------------IN---NL 1452
            +          L+ S   T  Q E                             IN   + 
Sbjct: 1430 SISKLESDDIKLRLSQIETKKQVESEDEYVDMGIDKEVDLGNKVKKMAQSLGDINEKLSF 1489

Query: 1453 SNLHVGDIVIGQIKRV-ESYGLFITIENT--NLVGLCHVSEL--SEDHVDNIETIYRAGE 1507
             +L++G ++ G I  V + +GLFI + +   +L  LC +SE      + + I +++  G+
Sbjct: 1490 EDLYIGRVLTGVIINVSKKHGLFIRLNDIKDDLTALCKLSECLDGRSNRNKISSVFNVGD 1549

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKN----DADNLQMSSEEESD-EAIEEVGSYNRSSL 1562
             V  K+LK + EKRR+ +G+K SYF      + DNL   + +  D E++E V S N   L
Sbjct: 1550 NVLCKVLKFNSEKRRVWVGIKPSYFSELKGEEGDNLSFENNQLMDIESVETVESENEEEL 1609

Query: 1563 LE-NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDE 1621
             +   ++ + D  +E  +   +   + E       LEV  +D + +     SQ      E
Sbjct: 1610 KDVEMTLGLNDEGLEYRESDHMNDGE-EDFLGNRNLEVMKEDSEYEK----SQESESKLE 1664

Query: 1622 AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA-----PRTPDEFERLVRSSPNSSF 1676
            +K ++        +K+K +R+ E         EK       P T D+FERL+ +  + S 
Sbjct: 1665 SKNLN--------RKQKVQRQLEHEHRIREEEEKGMRSHLNPSTIDDFERLLITHRDVSS 1716

Query: 1677 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP------ 1730
            +WI+YM++ L + D++KAR +AER+L+ I+++EE E+ NIW+AY N+E  YG        
Sbjct: 1717 LWIRYMSYYLDLEDLDKARMVAERSLKQISVKEEMERWNIWIAYINMEIVYGKNELLTST 1776

Query: 1731 ----------PEEAVVK----VFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKM 1775
                       E+ + K    +  RAL    D KK+++ +     R  + +    LL + 
Sbjct: 1777 GENNISSLRGKEDGIPKNVRQILDRALMNVTDQKKLYIQIFSSLRRHSKEEQGLALLEEG 1836

Query: 1776 IKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833
            +KKF+ S K+W+  +  L +   Q++    V+Q++L S+ + K ++ I+  A LEF+ G 
Sbjct: 1837 LKKFQTSRKLWVTYLTCLYESDNQKKARDEVIQKSLKSVSKDKVVRLITDIARLEFEYGN 1896

Query: 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD-------------VDLIRGLFERAIS 1880
             +RGR++FE +L E  KR DLWS Y D   +L               +++ R +F   I 
Sbjct: 1897 INRGRTIFENLLEENSKRMDLWSQYFDILTKLCSKDNPKSNSSMADHIEMARSIFSSCIE 1956

Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
             +  P+ MK +F ++L +EK  G  +  ++V+  A+ YV
Sbjct: 1957 KNFKPRSMKMIFTRWLSFEKEFGSLQSQKHVQDLAINYV 1995



 Score = 43.9 bits (102), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 118/254 (46%), Gaps = 27/254 (10%)

Query: 93  KKKTERKANETVDDLGSL-FGD--GISGK----LPRYANKITLKNISAGMKLWGVVAEVN 145
           +K+  +   + +D++  L  GD  GI  K    +  + N I  +++  G  L+GV+  V+
Sbjct: 3   RKRNLKNIQDDIDEVEDLEHGDFIGIKSKNLKTITSFTN-IERRDLKLGTLLFGVIDHVS 61

Query: 146 EKDLVICLPGGLRGLARAADALDPILDNEIEANED---NLLPTIFHVGQLVSCIVLQLDD 202
           EK+L+I LPG    +    + L+      IE  ++     L   F VGQ V+  ++  + 
Sbjct: 62  EKELIISLPGSNTAIISIENTLEDSRTIPIELFQELKKKSLEDRFSVGQFVNGAIISNNK 121

Query: 203 DKKEIGKRKIWLSLRLSLLYKGLSLETVQE---GMVLTAYVKSIEDHGYILHFGLPSFTG 259
            K  I       +L+ S+L  GL+  +      G V++A + S E+HG+ ++ G+     
Sbjct: 122 IKNNI-------TLKPSILNAGLNSNSKCLNVFGYVISALIISKENHGFNIYTGIQGVKT 174

Query: 260 FLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS--DPDTVSKCVTKDLKGISID 317
              +  + E+   + + G +L   +    + + ++  +   D +  SK   K++  +SI 
Sbjct: 175 VFMK--VEESEFKEYRLGQILPVSIHQFFKEKSLLICTPIYDQNENSKIGRKEI--LSIH 230

Query: 318 LLVPGMMVSTRVQS 331
            + PG+MV   + +
Sbjct: 231 EIKPGLMVECLIHA 244


>gi|312374936|gb|EFR22395.1| hypothetical protein AND_15302 [Anopheles darlingi]
          Length = 1641

 Score =  203 bits (517), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 113/295 (38%), Positives = 172/295 (58%), Gaps = 7/295 (2%)

Query: 1631 RHAKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1689
            R    K++EER   +R  EE L +  A P TPD+F+RLV + PN+S +WI+YMAF +  A
Sbjct: 1337 RFEAMKQEEER---LRKIEEELADPSATPHTPDQFDRLVMAQPNNSMLWIRYMAFHMESA 1393

Query: 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1749
            +++KAR++A +AL+ IN REE E LN+W+A  NLE  Y     +   +V   A+QY D  
Sbjct: 1394 ELDKARTVARKALKAINFREEAELLNVWIALLNLELRYETV--DTFKEVLTEAIQYNDAF 1451

Query: 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRA 1808
            KV+  +L +    ++     ELL  ++KKF+    +W        +  Q    + ++ +A
Sbjct: 1452 KVYRRVLDILIDCQKVSEVSELLELLVKKFRKENDMWYLVADAWYRIGQTNKAKPLLSQA 1511

Query: 1809 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1868
            L SLP   HI  I + A L  ++G  D    +FE IL+ YPKRTD+WS Y+D  ++ G +
Sbjct: 1512 LKSLPNRDHIPLIVKFAFLHNRHGNRDEAHLLFEQILTSYPKRTDIWSQYVDMLVKDGLI 1571

Query: 1869 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
            +  R + ERAI   LP K MK L+ KY+ +E+  G+ + +  VKQ A +YV++ L
Sbjct: 1572 EEARQILERAIVQRLPMKNMKTLYTKYVTFEEKHGDRDSVRRVKQMAADYVQAQL 1626



 Score =  101 bits (251), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 140/621 (22%), Positives = 257/621 (41%), Gaps = 52/621 (8%)

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN- 181
           A+ +    +  GM + G V    +  + + LPG + G      A+       ++A  D  
Sbjct: 74  ASNLGFVTLQTGMLVLGCVQRTFKTHMEVTLPGRITGTV-PVPAISEAYTKRLQAMIDRQ 132

Query: 182 -----LLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
                 L  ++ V +LV   V++     K+   R++ LSL    L+   +   +  G+VL
Sbjct: 133 SFDCPTLDDLYKVNELVYVKVME-----KQTSPRQLTLSLNPHDLHSSFTANQLVPGLVL 187

Query: 237 TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 296
           +A +   EDHGY +  G+ +   FLP+ NL +NS    + G  L   +  + R    V +
Sbjct: 188 SATLSIEEDHGYTMDVGIRNVRAFLPKENLCKNS---TEIGRNLFCSIEKVTRQGTTVTI 244

Query: 297 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN 356
                   +    ++   +++ +VPG +V   V S++++G+     T F  TV  F  + 
Sbjct: 245 ILKAFRPKESRLLNVSMTNLETIVPGCVVPFTVGSVVKHGLR---GTLFDDTVAAFVNET 301

Query: 357 TFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS-HVKVGDIYDQS 414
                N K + Y   ++++A +L+V P ++ V ++L  Y   NRA  S     G+  + +
Sbjct: 302 MLTQPNSKPESYTMFQQLDATVLYVMPVTKHVFVSLAKY-PGNRAENSVAYAAGETIENA 360

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA---EEEVRKLEKKYKEGSCVRVRILGFR 471
            VV V      L          P  V +  +    EE V  +  KY  GS   +RIL + 
Sbjct: 361 HVVTVTSAGAWLQFAKEYRALLPKSVIMKRIKGNYEESV--VMSKYHVGSVHTLRILRY- 417

Query: 472 HLEGLATGILKASAFEGLV--FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             + L    +     +  V   T  D++ G + + +V  +   G      G V+      
Sbjct: 418 --DPLNRTFIVCDTLDNAVDELTLQDIQIGEIYQMRVKKLLDAGGFFVEQGAVRGSVSRE 475

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYA--EATDRL 587
                + VK G + +V A ++F      +  +  T+   L+K  + ILSS    E  + +
Sbjct: 476 WFDRTQHVKEGARVQVRA-MMFE---PSTPFVQFTNLPDLLKKGIRILSSREQLENANSI 531

Query: 588 IT-------HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
           +T       HG + +  +    ++F N ++G   +    ++          VG VV+  +
Sbjct: 532 LTAPEAKQFHGLVVQETRDYFMIKFANDIKGLLMKHLRDMEQDTAKMHTLRVGSVVQVTV 591

Query: 641 MSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                A++++ LS  +  T         + +L    V  V P  V + V+ +  SKGTIP
Sbjct: 592 HQYNFATQKLLLSLPLHSTDT-------VSTLTEATVIAVLPTGVEI-VLKEDRSKGTIP 643

Query: 701 TEHLADHLEHATVMKSVIKPG 721
            ++ +D   H  +    +K G
Sbjct: 644 LQYFSDFAAHNPLYVGQLKEG 664


>gi|407404924|gb|EKF30181.1| rRNA biogenesis protein, putative [Trypanosoma cruzi marinkellei]
          Length = 671

 Score =  203 bits (516), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 185/305 (60%), Gaps = 11/305 (3%)

Query: 1628 KNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1687
            K N   ++K ++ + +E   A ER +E  AP +PDEF RL+ ++PN+S++W+++MA  ++
Sbjct: 329  KKNGGGEQKLRKRKIEEAIDAYERSMETAAPSSPDEFRRLLMAAPNNSYLWVQWMAHHVA 388

Query: 1688 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC- 1746
            +   E+AR +AE+AL TI +RE  E+LN+WVAY NLEN +G    E++  VF+RALQ+  
Sbjct: 389  LQQQEEARLVAEKALSTIGVRETQERLNVWVAYMNLENIHGT--MESLSAVFKRALQHAP 446

Query: 1747 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVV 1805
            DP  V+  L  ++  T +      L   M+ KF++  + W R  + L+ Q +++ ++ +V
Sbjct: 447  DPLVVYERLADIFSATRKPNQLLALCRTMVSKFRNEQRTWERLGKVLIDQKKRDQLRRIV 506

Query: 1806 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1865
            +    +L R  +   + + A+ E+KNG  + GR++FEG++   PK++D+WS YLDQE+ L
Sbjct: 507  KDMSGALRRDAYSLTVVRLAVYEYKNGSVENGRALFEGLVVRMPKKSDVWSAYLDQEMAL 566

Query: 1866 -------GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
                     V L+R L ERA++ +   K M+    +++ +E++ G    +E VK +A  Y
Sbjct: 567  LVRRDESAAVPLVRALLERAVATNFSAKVMQQFLTRFMSFERTYGTPADVEKVKTRARSY 626

Query: 1919 VESTL 1923
            VE+ +
Sbjct: 627  VEAKI 631


>gi|239789556|dbj|BAH71394.1| ACYPI007311 [Acyrthosiphon pisum]
          Length = 353

 Score =  202 bits (515), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/281 (39%), Positives = 168/281 (59%), Gaps = 4/281 (1%)

Query: 1645 IRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            +R  EE L + +  P+  D F+RLV S+PNSSF+WIKYMA  L   +VEKAR+ A+RAL 
Sbjct: 71   LRKVEEELTQIETNPQNADHFDRLVLSNPNSSFIWIKYMACHLQATEVEKARATAKRALS 130

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
             I+ REE EKLNIW A  NLEN YG   +E+  +    AL+  D  ++++ +L ++  + 
Sbjct: 131  IIDTREEQEKLNIWTALLNLENLYGT--KESFKQTMDEALRSNDEYQIYIKILDIFAESN 188

Query: 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFIS 1822
            + K  +EL+ K+ +KF+ S   +L       K  + G  + ++Q+AL +LP   H+  IS
Sbjct: 189  KLKELEELITKINRKFRDSLDAYLHCATVYFKLNKPGKARFILQKALSNLPTKSHVTMIS 248

Query: 1823 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882
            + A++E  +G  +  +++FE +L+ YP R D+WS+Y+D  I+   +DL R   ERA    
Sbjct: 249  RFALVENSDGSPEEAQTLFEHVLTSYPSRIDVWSLYVDMLIKFNRIDLARHALERATIQK 308

Query: 1883 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
            L PKKMK LF K++  E   G  E ++ VK+    YV+  L
Sbjct: 309  LAPKKMKSLFNKWMMLEGKYGTSESVDKVKECMNNYVDLIL 349


>gi|46111359|ref|XP_382737.1| hypothetical protein FG02561.1 [Gibberella zeae PH-1]
          Length = 1782

 Score =  202 bits (514), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/289 (38%), Positives = 179/289 (61%), Gaps = 11/289 (3%)

Query: 1620 DEAKTIDEKNNRHAKKKEKEEREQ-EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1678
            DE ++  E+  + A+K +K+ R + E++      L+ + P+T  ++ERL+   P+SS +W
Sbjct: 1457 DEPESESEEQAKDAEKPKKKRRTRDEVQIDRTAELDTNGPQTSSDYERLLLGQPDSSELW 1516

Query: 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1738
            I Y+AF + +A++ KAR +AERA++TINIREE EKLN+WVAY NLE  YG   ++ V +V
Sbjct: 1517 IAYLAFQMQVAELSKAREVAERAIKTINIREETEKLNVWVAYLNLEVAYGT--KQTVEEV 1574

Query: 1739 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LK 1795
            F+RA QY D +++H  L  +Y ++E+ K AD L   M+KKF   S  VWL     L   +
Sbjct: 1575 FKRACQYNDQQEIHERLASVYIQSERLKDADALFETMVKKFGAKSPNVWLNYAHFLHATR 1634

Query: 1796 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTD 1853
             + +G +A++ RA   L +  H   +++ A LEF+  NG  +RGR+MF G+L  +PK+ D
Sbjct: 1635 NKPDGARALLPRATQQLGKSHHTNLMTRFAALEFRSPNGEPERGRTMFAGLLEAFPKKGD 1694

Query: 1854 LWSIYLDQEIRLGDVD--LIRGLFE-RAISLSLPPKKMKFLFKKYLEYE 1899
            +WS  LD E+ L + D  +IR +F+ R     L P + +  F+++  +E
Sbjct: 1695 IWSQRLDLELGLSEPDPVIIRDVFKARTRVQGLKPLQAEKWFRRWTAWE 1743



 Score =  187 bits (474), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 211/814 (25%), Positives = 354/814 (43%), Gaps = 95/814 (11%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEV------DAEFEAVERGLHKKNKKK--KKKTERKA 100
           +D P+FPRGG   LT  E+ +I+ E       D EF  V +   KK +K   K   ++  
Sbjct: 59  EDEPMFPRGGASILTPLEQKKINIEAKADAMRDEEFNTVTKDQKKKKRKTALKGGDKKVD 118

Query: 101 NETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG- 159
            +T D+  ++  + +S            KN+  G  +   V  +N  ++ + LP  L G 
Sbjct: 119 KKTGDEEQAIRVESLS-----------FKNLVKGSLVLAQVTRINNLNVEVALPNNLTGH 167

Query: 160 --LARAADALDPILDNEIEANEDNL-----------LPTIFHVGQ-LVSCIVLQLDDDKK 205
             +   +  L   L+NE    +D             L +IF VGQ L + +V  +++   
Sbjct: 168 ISIVAVSQQLTERLENETADKDDEEEEEAEDDEGIDLKSIFAVGQYLRAYVVSTVEESTT 227

Query: 206 EIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNN 265
             GKR+I LSLR S    GL  + V     + A V S++D G+++  G+ +   FL R+ 
Sbjct: 228 GKGKRRIELSLRPSEANTGLEKDDVVPNATVMASVASVQDRGFVMDTGIENLGAFLSRSE 287

Query: 266 LAENSGID---VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPG 322
           +  +  ID   ++PG +    V S     K+  LS     +           +I   +PG
Sbjct: 288 V--DKTIDEKRLQPGAVFLCQVISKGANGKIAQLSLQQKKIGNPKNLPTDATTIKTFLPG 345

Query: 323 MMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDP 382
            M    V +    G+    + +   T DI H        +    Y    +  AR++   P
Sbjct: 346 TMTDVLVSNTDRRGLAGKIMGHLDVTADIIHSGVGPAGVSLDTAYKIGSRAKARVICNFP 405

Query: 383 TSR--AVGLTLNPYLL------------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 428
            +R   +G++L P++               + P   + +  + +   V  V+  +GL +D
Sbjct: 406 GAREPKLGISLLPHITTLEKKRSTKSTDSKKNPTQVLPISSLVETCTVRHVEADIGLFVD 465

Query: 429 IPSTPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASA 485
           I    +S   +V IS V + +V  L +    YK GS  + R++G+  ++GL     + S 
Sbjct: 466 IGIPGLS--GFVHISRVKDGKVEALYESSGPYKAGSEHKGRVVGYNEIDGLFQISFEKSV 523

Query: 486 FEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEIVKPG 540
            E       DV  G VV  ++  + VD  G    IV+   G+    P  H+S+  +  P 
Sbjct: 524 LEQEYLRLEDVPLGAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHLSDVRLQHPE 583

Query: 541 KKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
           KKF+ G ++  RVL   +  K++ +T KKT+V S+  ++ SY E T  +   G I K+  
Sbjct: 584 KKFRQGMKVKARVLSTNLDKKQMRLTLKKTIVNSEAPVVKSYDEVTVGMQIPGTIIKVLS 643

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----- 653
            G  ++F+  VQGF P SE+      +P   + +GQVV   ++   P  +R+ +S     
Sbjct: 644 SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSCKDPS 703

Query: 654 -FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 712
            F ++     +   ++L  +VS  V   T + V V  +A    K TI   HL D      
Sbjct: 704 AFGLEKQNALKK--LQLSDVVSAKVTQKTEDQVFVE-LADSQLKATISVGHLTD------ 754

Query: 713 VMKSVIKPGYEFDQLLV-----------LDNESSNLLLSAKYSLINSAQQ--LPSDASHI 759
             KS  K  Y F ++ V            D+    ++LS K SL+++++   L +     
Sbjct: 755 --KSNSKNQYAFKRIAVGQTLSDLVIIEKDDNRRVIVLSHKPSLLDASKNRTLLTSFEKA 812

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
               +V G+V NI  T  FV+F G LT   P+++
Sbjct: 813 KEGKIVAGFVRNITVTAVFVQFAGNLTALLPKAR 846



 Score = 73.2 bits (178), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 159/384 (41%), Gaps = 46/384 (11%)

Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            VG    A +    P  L +       GRI+  E +DD S  + +L +NF IG  +  R+ 
Sbjct: 1018 VGDTHVAFVNNSSPQHLWVNLSPSVRGRINAMEASDDLSQ-LNDLEANFPIGSALKVRVT 1076

Query: 1123 A---KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
            A   ++N+ D+        S     +T S +   ++             G V KV+    
Sbjct: 1077 AVDVRNNRLDLSA----RSSNSSDAVTWSALKQNMVL-----------PGRVTKVNERQV 1121

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
            L+ +S  +   + + D   +   +    +R   G  V   V+ ++   K LRL  RP + 
Sbjct: 1122 LVKLSEAVSGPVHLPDMTDDFDTINTLNQRK--GDIVRVSVVELDSSNKRLRLSTRPSR- 1178

Query: 1240 GISDKTVDISNDNMQ--TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
             I   T+ I +  +   + +  GDIV G +  +     GL V +G  +   V  + L + 
Sbjct: 1179 -IMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSD--KGLFVLLGGQVTALVKISNLSDR 1235

Query: 1298 CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1357
             + +    +   Q VK +V+ + +  R   HVE+SL+SS+          +  D   P  
Sbjct: 1236 YIKEWKDHFQVDQLVKGRVVAVDKLTR---HVEMSLKSSV----------VDEDYTPPTT 1282

Query: 1358 HLEKIEDLSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
            +     D+    +V G V+ V   G FI++  S  +      S +++  V+   K +  G
Sbjct: 1283 Y----NDIQEGQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEG 1338

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTS 1439
              V  RVLSV+   +RV   LK S
Sbjct: 1339 DAVKARVLSVDAEKRRVTFGLKPS 1362



 Score = 68.6 bits (166), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 136/298 (45%), Gaps = 26/298 (8%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            G +V   I K++    GV GL+V++   + G V    L ++ +  P   + +G  VK +V
Sbjct: 537  GAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHLSDVRLQHPEKKFRQGMKVKARV 596

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L  +   +    + L+L+ ++              V++    ++  ++++  M + G + 
Sbjct: 597  LSTNLDKK---QMRLTLKKTI--------------VNSEAPVVKSYDEVTVGMQIPGTII 639

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             V S G  I     +   + +S +S+ Y++ P++ F IG++V+  VL V+P  KR+ V+ 
Sbjct: 640  KVLSSGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSC 699

Query: 1437 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496
            K  D       + N L  L + D+V  ++ +     +F+ + ++ L     V  L++   
Sbjct: 700  K--DPSAFGLEKQNALKKLQLSDVVSAKVTQKTEDQVFVELADSQLKATISVGHLTDKSN 757

Query: 1497 DNIETIYR---AGEKVK-VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
               +  ++    G+ +  + I++ D  +R I L  K S      +   ++S E++ E 
Sbjct: 758  SKNQYAFKRIAVGQTLSDLVIIEKDDNRRVIVLSHKPSLLDASKNRTLLTSFEKAKEG 815



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 160/368 (43%), Gaps = 46/368 (12%)

Query: 223  KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGI 272
            K LSLE V+ G    A+V +       ++   PS  G +            N+L  N  I
Sbjct: 1009 KPLSLEDVKVGDTHVAFVNNSSPQHLWVNLS-PSVRGRINAMEASDDLSQLNDLEANFPI 1067

Query: 273  DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
                G  L+  V ++D     + LS+     S  VT     +  ++++PG     RV  +
Sbjct: 1068 ----GSALKVRVTAVDVRNNRLDLSARSSNSSDAVT--WSALKQNMVLPG-----RVTKV 1116

Query: 333  LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK--VNARILFVDPTSRAVGLT 390
             E  V++      +G V +  + + F T N     NQ K   V   ++ +D +++ + L+
Sbjct: 1117 NERQVLVKLSEAVSGPVHLPDMTDDFDTIN---TLNQRKGDIVRVSVVELDSSNKRLRLS 1173

Query: 391  LNP-YLLHNRAPPSHVKVGDI--YDQSKVVR------VDRGLGLLLDIPSTPVSTPAYVT 441
              P  ++ +  P    ++ D+   D   +VR       D+GL +LL    T     A V 
Sbjct: 1174 TRPSRIMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVT-----ALVK 1228

Query: 442  ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKP 498
            IS++++  +++ +  ++    V+ R++    L       LK+S  +       T++D++ 
Sbjct: 1229 ISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQE 1288

Query: 499  GMVVKGKVIAVDSFGAIVQFPG--GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
            G VV GKV  V+ FGA +   G   V  LC    M+E  +    K +K G  +  RVL V
Sbjct: 1289 GQVVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSV 1348

Query: 557  KSKRITVT 564
             +++  VT
Sbjct: 1349 DAEKRRVT 1356



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 139/321 (43%), Gaps = 35/321 (10%)

Query: 543  FKVGAELVFRV--LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
            F +G+ L  RV  + V++ R+ ++ + +   S  A+  +++     ++  G +TK+ +  
Sbjct: 1065 FPIGSALKVRVTAVDVRNNRLDLSARSS--NSSDAV--TWSALKQNMVLPGRVTKVNERQ 1120

Query: 601  CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
              V+    V G     ++  D     +     G +V+  ++    +++R+ LS   +P+R
Sbjct: 1121 VLVKLSEAVSGPVHLPDMTDDFDTINTLNQRKGDIVRVSVVELDSSNKRLRLS--TRPSR 1178

Query: 661  VSEDDL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
            +    L            +  G +V G V  V+   +  +V+  G     +   +L+D  
Sbjct: 1179 IMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSDKGL--FVLLGGQVTALVKISNLSDRY 1236

Query: 709  EHATVMKSVIKPGYEFDQLL-----VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
                      K  ++ DQL+      +D  + ++ +S K S+++     P+  + I    
Sbjct: 1237 IKE------WKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQEGQ 1290

Query: 764  VVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
            VV G V  + E G F+   G   ++G   RS+  +    D +K Y  G +V++ +L V++
Sbjct: 1291 VVTGKVRKVEEFGAFILIDGSDNVSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSVDA 1350

Query: 822  ETGRITLSLKQSCCSSTDASF 842
            E  R+T  LK S     D+  
Sbjct: 1351 EKRRVTFGLKPSLFEDVDSDM 1371



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 164/377 (43%), Gaps = 37/377 (9%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD-NEIEANEDNLLP 184
            ++L+++  G      V   + + L + L   +RG   A +A D +   N++EAN      
Sbjct: 1011 LSLEDVKVGDTHVAFVNNSSPQHLWVNLSPSVRGRINAMEASDDLSQLNDLEAN------ 1064

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F +G  +   V  +D     +   ++ LS R S     ++   +++ MVL   V  + 
Sbjct: 1065 --FPIGSALKVRVTAVD-----VRNNRLDLSARSSNSSDAVTWSALKQNMVLPGRVTKVN 1117

Query: 245  DHGYILHFG--------LPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 296
            +   ++           LP  T     ++    + ++ + G +++  V  +D + K + L
Sbjct: 1118 ERQVLVKLSEAVSGPVHLPDMT-----DDFDTINTLNQRKGDIVRVSVVELDSSNKRLRL 1172

Query: 297  SSDPDTV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
            S+ P  +  S    KD +   +  L  G +V   V+++ + G+ +      T  V I +L
Sbjct: 1173 STRPSRIMSSTLPIKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGGQVTALVKISNL 1232

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL-HNRAPPS---HVKVGDI 410
             + +    WK+ +   + V  R++ VD  +R V ++L   ++  +  PP+    ++ G +
Sbjct: 1233 SDRY-IKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLKSSVVDEDYTPPTTYNDIQEGQV 1291

Query: 411  YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF 470
                KV +V+     +L   S  VS   +   S +AE+ V+   K YKEG  V+ R+L  
Sbjct: 1292 V-TGKVRKVEEFGAFILIDGSDNVSGLCHR--SQMAEQAVKDATKLYKEGDAVKARVLSV 1348

Query: 471  RHLEGLATGILKASAFE 487
               +   T  LK S FE
Sbjct: 1349 DAEKRRVTFGLKPSLFE 1365



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 135/304 (44%), Gaps = 24/304 (7%)

Query: 1049 TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 1108
            +S+S  A   S+     ++   +T++   ++ +K      G +H+ ++ DD  + +  L 
Sbjct: 1091 SSNSSDAVTWSALKQNMVLPGRVTKVNERQVLVKLSEAVSGPVHLPDMTDD-FDTINTL- 1148

Query: 1109 SNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPS--MLTVSEIGSKLLFEECDVSIG 1164
             N + G  V   ++    SNK          LS +PS  M +   I  K + +   +  G
Sbjct: 1149 -NQRKGDIVRVSVVELDSSNK-------RLRLSTRPSRIMSSTLPIKDKEISDVSQLDAG 1200

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
              V G+V  V ++   + +   + A + I  S      ++E++  F + + V G V++++
Sbjct: 1201 DIVRGFVKNVSDKGLFVLLGGQVTALVKI--SNLSDRYIKEWKDHFQVDQLVKGRVVAVD 1258

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
               KL R V    +  + D+  D +       I EG +V G++ K+      +++    +
Sbjct: 1259 ---KLTRHVEMSLKSSVVDE--DYTPPTTYNDIQEGQVVTGKVRKVEEFGAFILIDGSDN 1313

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI-SRTVRGTFHVELSLRSSLDGMSST 1343
            + G  H +++    V D    Y EG  VK +VL + +   R TF ++ SL   +D  S  
Sbjct: 1314 VSGLCHRSQMAEQAVKDATKLYKEGDAVKARVLSVDAEKRRVTFGLKPSLFEDVD--SDM 1371

Query: 1344 NSSD 1347
            ++SD
Sbjct: 1372 DNSD 1375



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 38/223 (17%)

Query: 730  LDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            LD+ +  L LS + S I S+  LP      SD S +    +V G+V N+ + G FV   G
Sbjct: 1163 LDSSNKRLRLSTRPSRIMSST-LPIKDKEISDVSQLDAGDIVRGFVKNVSDKGLFVLLGG 1221

Query: 784  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
            ++T     S   D    +    + V Q V+  ++ V+  T  + +SLK        +S +
Sbjct: 1222 QVTALVKISNLSDRYIKEWKDHFQVDQLVKGRVVAVDKLTRHVEMSLK--------SSVV 1273

Query: 844  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
             E +        +Q                 G V+ GKV +  +FG  +  +   +V G 
Sbjct: 1274 DEDYTPPTTYNDIQE----------------GQVVTGKVRKVEEFGAFILIDGSDNVSGL 1317

Query: 904  ITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
                Q+A   V+        G  ++A +L V   +R V   LK
Sbjct: 1318 CHRSQMAEQAVKDATKLYKEGDAVKARVLSVDAEKRRVTFGLK 1360



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 22/181 (12%)

Query: 667 VKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPG 721
           V LG++V+  ++  VV    V  ++  +A+G S G +P +HL+D  L+H         P 
Sbjct: 534 VPLGAVVTCEIEKVVVDERGVSGLIVKVAEGIS-GFVPEQHLSDVRLQH---------PE 583

Query: 722 YEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
            +F Q       +L  + +   + L+ K +++NS   +      +     + G +  ++ 
Sbjct: 584 KKFRQGMKVKARVLSTNLDKKQMRLTLKKTIVNSEAPVVKSYDEVTVGMQIPGTIIKVLS 643

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           +G  ++F G + GF P S+  +    D  + + +GQ V  ++LDV  E  R+ +S K   
Sbjct: 644 SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHFRIGQVVSIHVLDVQPEDKRLVVSCKDPS 703

Query: 835 C 835
            
Sbjct: 704 A 704



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 102/466 (21%), Positives = 189/466 (40%), Gaps = 69/466 (14%)

Query: 1079 LRLKFGI-GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWE 1137
            L +  GI G  G +HI+ V D K   +      +K G     R++   N+ D     L++
Sbjct: 462  LFVDIGIPGLSGFVHISRVKDGKVEALYESSGPYKAGSEHKGRVVG-YNEIDG----LFQ 516

Query: 1138 LSIKPSMLTVS-------EIGSKLLFEECDVSIGQR-VTGYVYKVDNEWALLTISRHLKA 1189
            +S + S+L           +G+ +  E   V + +R V+G + KV    +     +HL  
Sbjct: 517  ISFEKSVLEQEYLRLEDVPLGAVVTCEIEKVVVDERGVSGLIVKVAEGISGFVPEQHL-- 574

Query: 1190 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1249
                         LQ  +++F  G  V   VLS N +KK +RL L+        KT+  S
Sbjct: 575  ---------SDVRLQHPEKKFRQGMKVKARVLSTNLDKKQMRLTLK--------KTIVNS 617

Query: 1250 NDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
               +     E   G  + G I K+LS   G ++Q    + G +  +E+    + DP   +
Sbjct: 618  EAPVVKSYDEVTVGMQIPGTIIKVLS--SGAIIQFFGTVQGFLPISEMSEAYIKDPKEHF 675

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRS-SLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1365
              GQ V   VL++    +    + +S +  S  G+   N+                ++ L
Sbjct: 676  RIGQVVSIHVLDVQPEDK---RLVVSCKDPSAFGLEKQNA----------------LKKL 716

Query: 1366 SPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
              + +V   V   T    F+ L+  +L A + + +L+D    + + ++   ++  G+ LS
Sbjct: 717  QLSDVVSAKVTQKTEDQVFVELADSQLKATISVGHLTDK--SNSKNQYAFKRIAVGQTLS 774

Query: 1425 ----VEPLSKRVEVTLKTSDS---RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1477
                +E    R  + L    S    + +++ + +      G IV G ++ +    +F+  
Sbjct: 775  DLVIIEKDDNRRVIVLSHKPSLLDASKNRTLLTSFEKAKEGKIVAGFVRNITVTAVFVQF 834

Query: 1478 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
               NL  L   + L  D  D  +      + ++VKI+ V  + +RI
Sbjct: 835  AG-NLTALLPKARLPADVQDQPDFGMHKHQSIEVKIVSVIPDHQRI 879


>gi|219126210|ref|XP_002183355.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405111|gb|EEC45055.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 300

 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/282 (40%), Positives = 177/282 (62%), Gaps = 17/282 (6%)

Query: 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1715
            D P T  +FERL+ SSPNSS +WI+YMAF L++AD+  AR +AERA Q I  R+E EKLN
Sbjct: 20   DNPETASDFERLLASSPNSSELWIRYMAFHLTLADIPAAREVAERAFQRIEFRQEGEKLN 79

Query: 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER--TEQNKL-----A 1768
            +W A   LE +YG+     +    +RA Q+ +PKK+HL +  + E+  TE++ +      
Sbjct: 80   VWCALLTLELKYGSST--CLKATIERACQHNNPKKIHLRVCEMMEKEATEKSSVGTTERT 137

Query: 1769 DELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827
            D++  KM KKFK    VWL   + LL+  + E   A+ +RALLSLP +KH++ +S+ A L
Sbjct: 138  DDMFSKMCKKFKSKKTVWLAHAKYLLRLGRHEEAYALSKRALLSLPAYKHVELMSKFAQL 197

Query: 1828 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER-------AIS 1880
             F+   A++ R++F+G+L + PKR D+  +Y+D+E++ G+ +  R LFE+       ++ 
Sbjct: 198  VFEYNSAEKARTLFDGLLQKNPKRLDILFVYVDKEVKYGEAETARSLFEKVAGKEIDSLQ 257

Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922
            + L  K+MK LFKK+  +E+  G  +  E VK+ A  YVES+
Sbjct: 258  MKLSDKQMKSLFKKWFSFEEQHGTAKTQERVKEAARAYVESS 299


>gi|328697835|ref|XP_003240456.1| PREDICTED: protein RRP5 homolog [Acyrthosiphon pisum]
          Length = 353

 Score =  201 bits (512), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/281 (39%), Positives = 168/281 (59%), Gaps = 4/281 (1%)

Query: 1645 IRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            +R  EE L + +  P+  D F+RLV S+PNSSF+WIKYMA  L   +VEKAR+ A+RAL 
Sbjct: 71   LRKVEEELTQIETNPQNADHFDRLVLSNPNSSFIWIKYMACHLQATEVEKARATAKRALS 130

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
             I+ REE EKLNIW A  NLEN YG   +E+  +    AL+  D  ++++ +L ++  + 
Sbjct: 131  IIDTREEQEKLNIWTALLNLENLYGT--KESFKQTMDEALRSNDEYQIYIKILDIFAESN 188

Query: 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFIS 1822
            + K  +EL+ K+ +KF+ S   +L       K  + G  + ++Q+AL +LP   H+  IS
Sbjct: 189  KLKELEELITKINRKFRDSLDAYLHCATVYFKLNKPGKARFILQKALSNLPTKSHVTMIS 248

Query: 1823 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882
            + A++E  +G  +  +++FE +L+ YP R D+WS+Y+D  I+   +DL R   ERA    
Sbjct: 249  RFALVENSDGSPEEAQTLFEHVLTSYPSRIDVWSLYVDMLIKSNRIDLARHALERATIQK 308

Query: 1883 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
            L PKKMK LF K++  E   G  E ++ VK+    YV+  L
Sbjct: 309  LAPKKMKSLFNKWMMLEGKYGTSESVDKVKECMNNYVDLIL 349


>gi|124088569|ref|XP_001347148.1| Pre-rRNA processing protein RRP5 [Paramecium tetraurelia strain d4-2]
 gi|145474227|ref|XP_001423136.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057537|emb|CAH03521.1| Pre-rRNA processing protein RRP5, putative [Paramecium tetraurelia]
 gi|124390196|emb|CAK55738.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1444

 Score =  201 bits (512), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 164/265 (61%), Gaps = 10/265 (3%)

Query: 1663 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1722
            E+E+ + ++PNS+ +WI+++A+      +E AR++ ERAL+ IN   E E+LN+W AY N
Sbjct: 1165 EYEKKILTNPNSAVIWIEFVAYAAENEGIESARNVIERALRVINFSNELERLNLWTAYLN 1224

Query: 1723 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1782
            LE  +G+  E+ ++ +F+R  Q CD KK+H+ L+ +Y + E+  L  EL    ++K+K S
Sbjct: 1225 LEFNFGS--EDNLINIFKRGCQNCDGKKLHVKLINIYRKAEKVDLTVELSRSFVQKYKQS 1282

Query: 1783 CKVWLRRVQRLLKQQQ--------EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
            CK W+  +Q L++ Q+           +  + RA+  L + K +K +S    L+F+N   
Sbjct: 1283 CKSWMEFLQSLMEWQKVHDDENPLYSFKDTLNRAVQCLKKSKQVKLLSFYGRLQFQNNQI 1342

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
            + G++ +E IL +   RTDLWS YLD  I+    D++R +F++AI  +  P+K+KFLFKK
Sbjct: 1343 EEGKTTYETILDKNSSRTDLWSQYLDLVIKHCQPDVVRSIFQKAIHNNKKPRKIKFLFKK 1402

Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYV 1919
             LEYE   G+   I+ VK++A ++V
Sbjct: 1403 QLEYENQYGDSATIQKVKEQAEQWV 1427



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 29/227 (12%)

Query: 494 SDVKPGMVVKGKVIAV----DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           SD+  G +VKG V  V    DS+  +++      A+ P   MS++ +  P  KF+VG++L
Sbjct: 426 SDLSVGAIVKGVVKQVLLKEDSYSVLLKINDNFNAILPSIQMSDYPLTNP-PKFRVGSKL 484

Query: 550 VFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
             R+L +  +   I VT K TL+ + + +  S  +       +G+  K  ++G  V+F+ 
Sbjct: 485 RVRILQIDEQHNNIIVTMKPTLL-TDIKVFKSLDDINAGDTLYGYTIKKLENGILVKFFQ 543

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSED 664
            + GF   S L LD G  P  +   GQ++K  +     +  ++ LS      K  +V+E 
Sbjct: 544 NIVGFL--SNLSLD-GQNPDDIKD-GQIIKVYVKYINQSENKLLLSLKKIDPKQKQVTEG 599

Query: 665 DL------------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 699
                         + LG  V  VV  +  N  VVYV  K    G I
Sbjct: 600 QTSNVPLTKQVKIKLNLGEKVQCVVSAIKNN--VVYVNLKDGKFGRI 644



 Score = 42.0 bits (97), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           ++L +D + +N++++ K +L+   +   S    I+    ++GY    +E G  V+F   +
Sbjct: 487 RILQIDEQHNNIIVTMKPTLLTDIKVFKS-LDDINAGDTLYGYTIKKLENGILVKFFQNI 545

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            GF   + ++DGQ  D  K    GQ ++  +  +N    ++ LSLK+
Sbjct: 546 VGFLS-NLSLDGQNPDDIKD---GQIIKVYVKYINQSENKLLLSLKK 588


>gi|195451940|ref|XP_002073142.1| GK13970 [Drosophila willistoni]
 gi|194169227|gb|EDW84128.1| GK13970 [Drosophila willistoni]
          Length = 1379

 Score =  201 bits (511), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/311 (36%), Positives = 182/311 (58%), Gaps = 11/311 (3%)

Query: 1619 TDEAKTIDEKNNRH------AKKKEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSS 1671
            +DEA+  +E++ +       AK K + + EQ +R  EER  + DA P T D++ERLV + 
Sbjct: 1062 SDEAEETEEQDPKKRRLSSKAKAKAQVKEEQRLREIEERNADPDAKPETIDQYERLVLAQ 1121

Query: 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731
            PN+S  W++Y+AF+LS  ++EKAR +A RA+ TI+ RE  E  NIW A  N+E  Y +  
Sbjct: 1122 PNNSLTWLQYIAFLLSNTEIEKARVLARRAISTISFRESQELRNIWSALLNIELTYNSQN 1181

Query: 1732 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW-LRRV 1790
             + V+K    AL   DP +++L+L+ +  +  Q +    +L  ++ KFK   K+W L   
Sbjct: 1182 FDDVLK---EALNSNDPLEIYLSLVDILRKNNQKERLSGVLVTILNKFKSELKIWSLAAD 1238

Query: 1791 QRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850
                  + + V A++QRAL +LP   HI  I   A L  K+   D  +++ + +++ YPK
Sbjct: 1239 AYFWLGRSDQVHALLQRALRTLPNSDHINCIVAFAKLFAKHDAHDMAQTLLDDVVTSYPK 1298

Query: 1851 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1910
            RTD+W +Y+D  I+   +D  R + ERA+   L P KM+ ++KKYL+ E++ G E  +  
Sbjct: 1299 RTDIWLVYVDMLIKAQLIDAARNVLERAVVQKLRPNKMQVIYKKYLQLEENFGTEAHVAN 1358

Query: 1911 VKQKAMEYVES 1921
            VKQ+A ++V +
Sbjct: 1359 VKQQAEQWVRN 1369



 Score =  127 bits (319), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 138/590 (23%), Positives = 271/590 (45%), Gaps = 55/590 (9%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKK-TERKANETVDDLGSLFG 112
           FPRGG   +  +E    + + +  F A ++ + K  K K K+  E   +ET         
Sbjct: 8   FPRGG---IVHQESKSGNNDSNIIFGATQKKIRKAPKSKDKQPNELDQDET--------- 55

Query: 113 DGISGKLPRY-ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALD 168
             +  +L  + A  +    +   M + GVV E +   + + LPG L   A  AD   A  
Sbjct: 56  -NVGEQLEAFSAESLKFDTLQEEMLVMGVVRETSATSVQVALPGRLTARALVADISEAYA 114

Query: 169 PILDNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS 226
            +    +  + +E + L  +FHVGQ+V    ++   D+ E  +  + LSLR + ++  L 
Sbjct: 115 HVAKAAMAGDTSEYHDLTELFHVGQIVYGRAIK--TDQLEAKRITVILSLRPADVHSQLQ 172

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENS-GIDVKPGLLLQGVVR 285
             ++++G + +  +  I++HG+I+  G+     F+P +   EN   +     L ++ +  
Sbjct: 173 HTSIKKGFIFSGAIAEIQEHGFIIETGIQGLQAFVPHDESNENQFHVGQLAFLKVKQITH 232

Query: 286 SIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-Y 344
             +++     + SD +   K   K     ++D L+PG +V  +V   L++G+  S L   
Sbjct: 233 DKNQSTCTCQIISDQN---KLKIKSQNETNLDYLLPGSIVRFKVSKQLKDGLKGSILNEN 289

Query: 345 FTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-- 402
           F   ++  HL +   T     DY+ +++ NAR+L+  P ++ V LTLN   +  +A P  
Sbjct: 290 FVAYINEHHLAHPLHTL---QDYDLNEEYNARVLYTMPLTKLVYLTLN---VEIKAGPEQ 343

Query: 403 ---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
                    + +K G I +++KV+R+  G G++L +        +Y  I    +    K 
Sbjct: 344 EVEDEAEDQTELKKGSIVEKAKVLRLASG-GVILLLNKQSKGLISYSCIKSHYKGNYDKD 402

Query: 454 E--KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
           E   KY   +  +VR+LG+  +E L       +     ++T  D+ PG +V  +++  D 
Sbjct: 403 EVLSKYGRKTKHKVRVLGYDLIESLYYCSDDPNVVNEKLYTLEDLNPGDLVSARLVKQD- 461

Query: 512 FGAIVQFPGGVK-ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT--VTHKKT 568
               ++  GG    L  +  + +   + PG++++VG  +  R+L V  +R T  +T++  
Sbjct: 462 ----IKINGGWSLKLGKINGIIDALYLAPGQRYEVGQRVRCRILDVNLERRTCYLTNRPE 517

Query: 569 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
            +     +L++   A +  +  G + K E +   ++F NG++G   + +L
Sbjct: 518 YLSKSAKLLTNLQSAQEGQVFTGTVVKNELNFFLIKFCNGLKGVLYKQQL 567


>gi|291227737|ref|XP_002733839.1| PREDICTED: CG5728-like [Saccoglossus kowalevskii]
          Length = 822

 Score =  200 bits (509), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 170/571 (29%), Positives = 277/571 (48%), Gaps = 69/571 (12%)

Query: 1277 LVVQIGPHLYGRVHFTELKNIC--VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            L V I P + G V+F  L   C  +  P   +  GQ  K  V++I +      H +L L 
Sbjct: 84   LRVDITPRMRGVVYFLHLSKNCHDLYSPEKHFKPGQAHKALVMKIDKQ-----HKKLDL- 137

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
             SLDG  S                     DL    +  G++ +       + L+      
Sbjct: 138  -SLDGTVSN--------------------DLKEGAVQNGWITHKYPTELGVQLAGGNHGN 176

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS----DSRTASQSEIN 1450
            V +++++D Y + P K F I + V   +L  +   K V ++L+ S    +  +    EI 
Sbjct: 177  VFITDINDKYSDDPIKMFRINQFVRCCILDCKD-EKHVTLSLRQSRINHNIVSVPDKEIR 235

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
            NL +L VGDIV G +K     G+F+++ +  L G   +  LS  +V+     +  G+ V 
Sbjct: 236  NLCDLSVGDIVKGYVKDYSEVGVFVSL-SKELKGRIQLKNLSSYYVNKSAEAFYCGKLVT 294

Query: 1511 VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAV 1570
             K+L +D +  +I L +   +       L    E+    +++ VG   R   +E      
Sbjct: 295  AKVLSIDVDNSKIELSIHPEH-----TGLPDQLEKRYRGSLKCVGDSERRKYVEQRKKQK 349

Query: 1571 QDM-DMESEDGG--------------SLVLAQIESRASVPPLEV---NLDDEQPDMDNGI 1612
            +   D E  D G               ++ +++ + + V  LE+   + DD+    +   
Sbjct: 350  RKRQDSEESDSGIDGVLKDADSDSEVEIITSKMSNTSKVARLELAGFSWDDKTFTANLTQ 409

Query: 1613 SQNQGHTDEAKTIDEKNNRHAKKKEKEEREQE-------IRAAEERLLEKD-APRTPDEF 1664
            S  +   D     D+ N    KKK K+ER+QE       +   E  L+++D AP   D+F
Sbjct: 410  SAKEMSGDSDSEDDDTNEEPLKKKTKKERQQEEKEEEKFLYRTELSLMDQDRAPENVDDF 469

Query: 1665 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1724
            +RLV SSP+SS +WI+YMAF L   D++KAR++AERAL+TI+ REE EKLN+WVAY NLE
Sbjct: 470  DRLVLSSPDSSMIWIRYMAFYLHTTDIDKARAVAERALKTISFREEQEKLNVWVAYLNLE 529

Query: 1725 NEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK 1784
            N YG    E +VK+F+RALQ CDP KV  +++ +Y +T++ + A++L   M+++F     
Sbjct: 530  NLYGT--NETLVKLFERALQMCDPLKVFRSMINIYTKTQKLEEAEQLYSTMVRRFNFHKD 587

Query: 1785 VWLRRVQRLLKQQQ-EGVQAVVQRALLSLPR 1814
            VW      L+K  + +  + ++QR+  SL +
Sbjct: 588  VWASYGMFLMKSGKLDAARKIMQRSFKSLDK 618



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 45/67 (67%)

Query: 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1871
            +P   +++ I + A  EFK G  +RGR+MFE +LS YPKRTD+WSIY+D  I+ G +D I
Sbjct: 700  VPMGDYVEIIVKFAQFEFKFGEPERGRTMFENVLSNYPKRTDIWSIYIDMVIKQGHIDAI 759

Query: 1872 RGLFERA 1878
              +  ++
Sbjct: 760  STVMWKS 766



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 104/238 (43%), Gaps = 31/238 (13%)

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
            P+K F  GQ+  A VM +        L L        + + S   K+      G++    
Sbjct: 111  PEKHFKPGQAHKALVMKIDKQHKKLDLSL--------DGTVSNDLKE------GAVQNGW 156

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
            IT   P EL ++   G HG + IT++ND  S   ++    F+I Q V   I+      D 
Sbjct: 157  ITHKYPTELGVQLAGGNHGNVFITDINDKYS---DDPIKMFRINQFVRCCIL------DC 207

Query: 1131 KKSFLWELSIKPSML--TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLK 1188
            K      LS++ S +   +  +  K +   CD+S+G  V GYV         +++S+ LK
Sbjct: 208  KDEKHVTLSLRQSRINHNIVSVPDKEIRNLCDLSVGDIVKGYVKDYSEVGVFVSLSKELK 267

Query: 1189 A--QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
               QL  L S Y    + +    F+ GK VT  VLSI+ +   + L + P   G+ D+
Sbjct: 268  GRIQLKNLSSYY----VNKSAEAFYCGKLVTAKVLSIDVDNSKIELSIHPEHTGLPDQ 321


>gi|322704015|gb|EFY95615.1| rRNA biogenesis protein RRP5, putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 1795

 Score =  200 bits (508), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 228/891 (25%), Positives = 388/891 (43%), Gaps = 84/891 (9%)

Query: 2   AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHS 61
           +A S K  + S  D P+  K+   + +  K   NDA     +     ++ P+FPRGGG  
Sbjct: 18  SAKSTKQGRPSKTDAPEIAKSKTAKTQPKKTSDNDARPKAPVVSLLKNEEPIFPRGGGSV 77

Query: 62  LTQRERDEIHAEVDAEFEAVER-----GLHKKNKKKKKKTERKANETVDDLGSLFGDGIS 116
           LT  E  +I  E  A+    E      G  +K  KK+K + +  N + ++  S   D + 
Sbjct: 78  LTPLEHKQIQLEAKADARREEEFDTRGGKAQKIPKKRKVSVKGGNRSAENKDS--EDFVK 135

Query: 117 GKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE 176
                    +  K +  G  + G +  +N  DL + LP  L G      A+   L N ++
Sbjct: 136 ------VESLNFKKLVKGSLVLGQITRINNLDLEVALPNNLTGHVSVV-AVSEQLTNRVQ 188

Query: 177 ANE--------------DNLLPTIFHVGQLVSCIVLQLDDDKKEIG----KRKIWLSLRL 218
                            D  L ++F VGQ +   V+   D+   IG    KRKI LSLR 
Sbjct: 189 EAAAEQDDEEDESSDETDVDLKSMFVVGQYLRVYVVSTMDES-AIGNGKNKRKIELSLRP 247

Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VK 275
           +    GL  + +     + A V S+ED G ++  G+P    FLP   +  +S ID   ++
Sbjct: 248 TETNSGLGKDDIVANSTVMASVVSVEDRGCVMDVGIPDLRAFLPHGEI--DSTIDQSRLQ 305

Query: 276 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
            G +    V        V  LS     +        +  +I+  +PG  V   + +    
Sbjct: 306 EGSVFLCQVTGKVSNGNVAQLSLQQKKLGSPKDIPTEATTINTFLPGTNVDVLITNTDRR 365

Query: 336 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNP 393
           G+    + +   T D+ H       T+ +  Y    KV AR++   PT++    G++L P
Sbjct: 366 GLAGKVIGHLDVTADLVHSGAGPLGTDLEATYKVGSKVKARVICNFPTAKEPKFGISLLP 425

Query: 394 YLL----------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS 443
           ++           +   P   + +  + ++  V RV+  +GL +D     +    +V IS
Sbjct: 426 HITSLTRKHPAKDNKNLPTEALPISSLVEKCTVRRVESEIGLFVDTGIAGLG--GFVHIS 483

Query: 444 DVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGM 500
            V + +V  L +    Y+ GS  + R++G+  L+G      + S  +       DV  G 
Sbjct: 484 RVKDGKVDALYESSGPYQVGSVHKGRVVGYSELDGQFHLSFEKSILDQQYIRMEDVPIGA 543

Query: 501 VVKGK----VIAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           V+  +    VI  +   G I+    G+       H+S+ ++  P KKF+ G ++  RVL 
Sbjct: 544 VITCEIEKLVIKEEGVRGLILNIADGITGYVAERHLSDIKLQHPEKKFRKGMKVKARVLS 603

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
               +K I  T KKTLV S   ++ S+ +A   L   G I K++ +G  ++FY  ++GF 
Sbjct: 604 TNPFTKEIRFTLKKTLVNSDAPVIKSHEDAIVGLQVPGTIIKLQPNGAHIQFYGRLKGFL 663

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-------MMKPTRVSEDDL 666
           P SE+      +P+  + +GQVV   I+   P  RR+ +S        + K T +     
Sbjct: 664 PVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQRRLIVSCKDPGAFGLDKQTALKN--- 720

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYEF 724
           ++LG LV+  V   T + V V ++     K  +P  HL D    ++   +K  I  G   
Sbjct: 721 LRLGELVAAKVTQKTEDQVFVELVDSQL-KAILPVGHLTDKSASKNQFALKR-ISAGQTL 778

Query: 725 DQLLVLD-NESSN-LLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             L+VLD NE    ++L+ K SLI ++++  L S+       ++V  +V N+ +T  FV+
Sbjct: 779 SDLMVLDKNEKRRAIILTQKPSLIKASKEGKLISNFEDAKQGTIVPAFVRNVTQTAVFVQ 838

Query: 781 FLGRLTGFAPRSK-AVDGQ-RADLSKTYYVGQSVRSNILDVNSETGRITLS 829
           F G L+   P+S+   D Q + D     Y  +S+   I+ V ++  RI ++
Sbjct: 839 FAGNLSALLPKSRLPADVQSKPDFGMHKY--ESIEVKIVSVINDLRRIMVA 887



 Score =  195 bits (495), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/286 (38%), Positives = 171/286 (59%), Gaps = 11/286 (3%)

Query: 1641 REQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1700
            R+ EI       L+   P+T  ++ERL+   P+SS +WI+YM F + ++++ KAR +AER
Sbjct: 1491 RKGEIEVDRTAELDAHGPQTSSDYERLLLGQPDSSKLWIQYMEFQMKVSELAKAREVAER 1550

Query: 1701 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1760
            A+++INIR+E EKL +WVAY  LE  YG   ++ V  VF+RA QY D +KVH  L  +Y 
Sbjct: 1551 AIKSINIRKEEEKLKVWVAYLKLEVTYGT--KQTVEDVFKRACQYNDEQKVHEELASIYI 1608

Query: 1761 RTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKH 1817
            ++ + K AD+L   M+KKF   +  VW      L   + Q +  +A++ RA   LP H+ 
Sbjct: 1609 QSGKLKDADDLYESMLKKFGAKAPSVWTNYATFLSVTRNQPDRARALLPRATQRLPAHQS 1668

Query: 1818 IKFISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQE--IRLGDVDLIRG 1873
               + Q A LEF+  NG  +RGR+MFEG+L+ +PKR DLWS  LD E  +  GD   +R 
Sbjct: 1669 QNIVGQFAALEFRSPNGEPERGRTMFEGLLATWPKRGDLWSWLLDLEEGVAGGDPTAVRD 1728

Query: 1874 LFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
            ++ER   +  L P + K  F +++++E+ +  + + E V  KA ++
Sbjct: 1729 VYERRTRVKGLKPNQAKKWFHRWVKWEEKLDPKGK-EKVMAKAQDW 1773



 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 224/968 (23%), Positives = 435/968 (44%), Gaps = 108/968 (11%)

Query: 608  GVQGFAPRSELG---LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRV 661
            G+ GF   S +    +D   E S  Y VG V K R++       + +LSF   ++    +
Sbjct: 475  GLGGFVHISRVKDGKVDALYESSGPYQVGSVHKGRVVGYSELDGQFHLSFEKSILDQQYI 534

Query: 662  SEDDLVKLGSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKS 716
              +D V +G++++  ++  V+    V  ++  IA G + G +   HL+D  L+H    + 
Sbjct: 535  RMED-VPIGAVITCEIEKLVIKEEGVRGLILNIADGIT-GYVAERHLSDIKLQHP---EK 589

Query: 717  VIKPGYEFDQLLVLDNE-SSNLLLSAKYSLINSAQQLPSDASHI--HPNSVVH----GYV 769
              + G +    ++  N  +  +  + K +L+NS      DA  I  H +++V     G +
Sbjct: 590  KFRKGMKVKARVLSTNPFTKEIRFTLKKTLVNS------DAPVIKSHEDAIVGLQVPGTI 643

Query: 770  CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
              +   G  ++F GRL GF P S+  +    D ++ + +GQ V  +IL V+ E  R+ +S
Sbjct: 644  IKLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQRRLIVS 703

Query: 830  LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
             K       D     ++  L E +A   + K         E  +   +++ ++       
Sbjct: 704  CKDPGAFGLDKQTALKNLRLGELVAAKVTQK--------TEDQVFVELVDSQLK------ 749

Query: 890  VVVSFEEHSDVYGFITHHQLAGATVESGSVI-QAAILDVAKAERLVDLSLKTVFIDRFRE 948
             ++     +D     + +Q A   + +G  +    +LD  +  R + L+ K   I   +E
Sbjct: 750  AILPVGHLTDKSA--SKNQFALKRISAGQTLSDLMVLDKNEKRRAIILTQKPSLIKASKE 807

Query: 949  AN--SNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 1006
                SN +  K+     A     V       V +     L   LP+        S  D+ 
Sbjct: 808  GKLISNFEDAKQGTIVPAF----VRNVTQTAVFVQFAGNLSALLPKSRLPADVQSKPDFG 863

Query: 1007 TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---V 1063
              K+   +      +++ +  L       R+++     +  E +  ++ K  +  D    
Sbjct: 864  MHKYESIEV----KIVSVINDL------RRIMVAHATAAPIEVTEKQKDKVSAPADGLEF 913

Query: 1064 GSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTAR 1120
            G++V A IT +K  +L ++       GR+ +++V D   ++ +       F   Q +  +
Sbjct: 914  GTVVTAVITSVKETQLNVQLTDTQVQGRVDVSQVFDQWEDITDPKKPLDKFHRKQQIEVK 973

Query: 1121 IIAKSNKPDMKKSFL----------WELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            +I   +  D +  FL           ELS K S +   E  + L  E   + +G     Y
Sbjct: 974  VIGVHDAKDHR--FLPISHRSAHSVLELSAKNSDVE-GENPNTLSLES--LKVGDSHIAY 1028

Query: 1171 VYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
            V  V  ++  + +S  ++ ++  ++++ + S L + +  F +G A+   V  I+ EK  L
Sbjct: 1029 VNNVTPQFLWVNLSPSVRGRVSAMEASDDLSLLNDLEANFPVGSALKVRVKFIDAEKNRL 1088

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
             L  R   D    + VD       T + +  ++ G+I+K+      L+V++   + G VH
Sbjct: 1089 DLSARSSTDS---QGVD------WTSLKQNMVLPGKITKV--NERQLMVKLSDIVSGPVH 1137

Query: 1291 FTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1350
              ++ +         Y + Q ++  ++E+     G   + LS+R          S  LS+
Sbjct: 1138 LPDMADDYDDINTLNYKKNQIIRVAIVEVD---AGNKRLRLSMRP---------SRILSS 1185

Query: 1351 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1410
             +    K +  +  ++   +V+G+VKNV+ KG F+ L   + A V ++NLSD +++  + 
Sbjct: 1186 TLPVADKEIANLSQVAAGDVVRGFVKNVSDKGLFVALGGHVTALVKIANLSDRFLKDWKD 1245

Query: 1411 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1470
             F + +LV GRVLSV+   K+VE++LK S +     + +   +++  G +V G++++VE 
Sbjct: 1246 LFQVDQLVKGRVLSVDSALKQVEMSLKAS-AVDEDYTPLVTYNDIKKGSVVTGKVRKVEE 1304

Query: 1471 YGLFITIE-NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            +G FI ++ ++N+ GLCH S+++++ V +   +Y+ G+ VK  +L+VD  KRRIS G++ 
Sbjct: 1305 FGAFILVDKSSNVSGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRRISFGLRP 1364

Query: 1530 SYFKNDAD 1537
            S F  D D
Sbjct: 1365 SLFDEDTD 1372



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 187/893 (20%), Positives = 335/893 (37%), Gaps = 139/893 (15%)

Query: 599  HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP 658
             G  +   +G+ G+     L       P   +  G  VK R++S+ P ++ I   F +K 
Sbjct: 560  RGLILNIADGITGYVAERHLSDIKLQHPEKKFRKGMKVKARVLSTNPFTKEIR--FTLKK 617

Query: 659  TRVSEDDLVK-------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-----D 706
            T V+ D  V        +G  V G +  + PN    ++   G  KG +P   ++     D
Sbjct: 618  TLVNSDAPVIKSHEDAIVGLQVPGTIIKLQPNGA--HIQFYGRLKGFLPVSEMSEAYIRD 675

Query: 707  HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 766
              EH  + + V         +L +D E   L++S K        +  +   ++    +V 
Sbjct: 676  PNEHFRIGQVVSV------HILHVDPEQRRLIVSCKDPGAFGLDKQTA-LKNLRLGELVA 728

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ-RADLSKTYYVGQSVRSNILDVNSETGR 825
              V    E   FV               VD Q +A L   +   +S   N   +     R
Sbjct: 729  AKVTQKTEDQVFVEL-------------VDSQLKAILPVGHLTDKSASKNQFALK----R 771

Query: 826  ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
            I+     S     D +  +   +L +K +++++SK  G  +   E    G+++   V   
Sbjct: 772  ISAGQTLSDLMVLDKNEKRRAIILTQKPSLIKASKE-GKLISNFEDAKQGTIVPAFVRNV 830

Query: 886  NDFGVVVSFEEHSDVYGFITHHQLAGATVESG--------SVIQAAILDVAKAERLVDLS 937
                V V F    ++   +   +L  A V+S           I+  I+ V    R + ++
Sbjct: 831  TQTAVFVQFA--GNLSALLPKSRLP-ADVQSKPDFGMHKYESIEVKIVSVINDLRRIMVA 887

Query: 938  LKTVFIDRFREANSNRQAQKKKRKREASKD-LGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
              T        A      +K+K K  A  D L     V A++  VKE  L + L +    
Sbjct: 888  HAT--------AAPIEVTEKQKDKVSAPADGLEFGTVVTAVITSVKETQLNVQLTD-TQV 938

Query: 997  IGYASVS-------DYNTQKFPQKQFLNGQSVIATVMA---------LPSSSTAGRLLLL 1040
             G   VS       D    K P  +F   Q +   V+          LP S  +   +L 
Sbjct: 939  QGRVDVSQVFDQWEDITDPKKPLDKFHRKQQIEVKVIGVHDAKDHRFLPISHRSAHSVLE 998

Query: 1041 LKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDK 1100
            L A +      +       S  VG    A +  + P  L +       GR+   E +DD 
Sbjct: 999  LSAKNSDVEGENPNTLSLESLKVGDSHIAYVNNVTPQFLWVNLSPSVRGRVSAMEASDDL 1058

Query: 1101 SNVVENLFSNFKIGQTVTAR---IIAKSNKPDM-------KKSFLWELSIKPSMLTVSEI 1150
            S ++ +L +NF +G  +  R   I A+ N+ D+        +   W  S+K +M+     
Sbjct: 1059 S-LLNDLEANFPVGSALKVRVKFIDAEKNRLDLSARSSTDSQGVDW-TSLKQNMV----- 1111

Query: 1151 GSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
                            + G + KV+    ++ +S  +   + + D A +  ++      +
Sbjct: 1112 ----------------LPGKITKVNERQLMVKLSDIVSGPVHLPDMADDYDDINTLN--Y 1153

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF--IHEGDIVGGRIS 1268
               + +   ++ ++   K LRL +RP +  I   T+ +++  +     +  GD+V G + 
Sbjct: 1154 KKNQIIRVAIVEVDAGNKRLRLSMRPSR--ILSSTLPVADKEIANLSQVAAGDVVRGFVK 1211

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
             +     GL V +G H+   V    L +  + D    +   Q VK +VL +   ++    
Sbjct: 1212 NVSD--KGLFVALGGHVTALVKIANLSDRFLKDWKDLFQVDQLVKGRVLSVDSALK---Q 1266

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
            VE+SL++S               VD     L    D+    +V G V+ V   G FI++ 
Sbjct: 1267 VEMSLKASA--------------VDEDYTPLVTYNDIKKGSVVTGKVRKVEEFGAFILVD 1312

Query: 1389 RKLDAKVLL--SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
            +  +   L   S ++D  V+   K +  G  V   VL V+ + +R+   L+ S
Sbjct: 1313 KSSNVSGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRRISFGLRPS 1365



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 134/298 (44%), Gaps = 26/298 (8%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            G ++   I K++    GV GL++ I   + G V    L +I +  P   + +G  VK +V
Sbjct: 542  GAVITCEIEKLVIKEEGVRGLILNIADGITGYVAERHLSDIKLQHPEKKFRKGMKVKARV 601

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L    T   T  +  +L+ +L              V++    ++  ED    + V G + 
Sbjct: 602  LS---TNPFTKEIRFTLKKTL--------------VNSDAPVIKSHEDAIVGLQVPGTII 644

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             +   G  I    +L   + +S +S+ Y+  P + F IG++V+  +L V+P  +R+ V+ 
Sbjct: 645  KLQPNGAHIQFYGRLKGFLPVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQRRLIVSC 704

Query: 1437 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496
            K  D       +   L NL +G++V  ++ +     +F+ + ++ L  +  V  L++   
Sbjct: 705  K--DPGAFGLDKQTALKNLRLGELVAAKVTQKTEDQVFVELVDSQLKAILPVGHLTDKSA 762

Query: 1497 DNIETIYR---AGEKVK-VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
               +   +   AG+ +  + +L  ++++R I L  K S  K   +   +S+ E++ + 
Sbjct: 763  SKNQFALKRISAGQTLSDLMVLDKNEKRRAIILTQKPSLIKASKEGKLISNFEDAKQG 820



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 38/236 (16%)

Query: 730  LDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
            +D  +  L LS + S I S+  LP      ++ S +    VV G+V N+ + G FV   G
Sbjct: 1166 VDAGNKRLRLSMRPSRILSST-LPVADKEIANLSQVAAGDVVRGFVKNVSDKGLFVALGG 1224

Query: 784  RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
             +T     +   D    D    + V Q V+  +L V+S   ++ +SLK        AS +
Sbjct: 1225 HVTALVKIANLSDRFLKDWKDLFQVDQLVKGRVLSVDSALKQVEMSLK--------ASAV 1276

Query: 844  QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
             E +                + L        GSV+ GKV +  +FG  +  ++ S+V G 
Sbjct: 1277 DEDY----------------TPLVTYNDIKKGSVVTGKVRKVEEFGAFILVDKSSNVSGL 1320

Query: 904  ITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
                Q+A   V+        G  ++A +L+V   +R +   L+    D   +  SN
Sbjct: 1321 CHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRRISFGLRPSLFDEDTDMESN 1376



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 168/386 (43%), Gaps = 46/386 (11%)

Query: 225  LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPR----------NNLAENSGIDV 274
            LSLE+++ G    AYV ++      ++   PS  G +            N+L  N  +  
Sbjct: 1014 LSLESLKVGDSHIAYVNNVTPQFLWVNLS-PSVRGRVSAMEASDDLSLLNDLEANFPV-- 1070

Query: 275  KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
              G  L+  V+ ID  +  + LS+   T S+ V  D   +  ++++PG     ++  + E
Sbjct: 1071 --GSALKVRVKFIDAEKNRLDLSARSSTDSQGV--DWTSLKQNMVLPG-----KITKVNE 1121

Query: 335  NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
              +M+      +G V +  + + +   N  N Y +++ +   I+ VD  ++ + L++ P 
Sbjct: 1122 RQLMVKLSDIVSGPVHLPDMADDYDDINTLN-YKKNQIIRVAIVEVDAGNKRLRLSMRPS 1180

Query: 395  LLHNRAPP---------SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 445
             + +   P         S V  GD+         D+GL + L    T     A V I+++
Sbjct: 1181 RILSSTLPVADKEIANLSQVAAGDVVRGFVKNVSDKGLFVALGGHVT-----ALVKIANL 1235

Query: 446  AEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE---GLVFTHSDVKPGMVV 502
            ++  ++  +  ++    V+ R+L            LKASA +     + T++D+K G VV
Sbjct: 1236 SDRFLKDWKDLFQVDQLVKGRVLSVDSALKQVEMSLKASAVDEDYTPLVTYNDIKKGSVV 1295

Query: 503  KGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG---AELVFRVLGVK 557
             GKV  V+ FGA  +V     V  LC    M++  +    K +K G     LV  V  VK
Sbjct: 1296 TGKVRKVEEFGAFILVDKSSNVSGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVK 1355

Query: 558  SKRITVTHKKTLVKSKLAILSSYAEA 583
             +RI+   + +L      + S+ ++A
Sbjct: 1356 -RRISFGLRPSLFDEDTDMESNDSDA 1380



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 6/175 (3%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
            S V  G VV+G V  V   G  V   G V AL  + ++S+  +      F+V   +  RV
Sbjct: 1198 SQVAAGDVVRGFVKNVSDKGLFVALGGHVTALVKIANLSDRFLKDWKDLFQVDQLVKGRV 1257

Query: 554  LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRF--YNGV 609
            L V S  K++ ++ K + V      L +Y +     +  G + K+E+ G F+     + V
Sbjct: 1258 LSVDSALKQVEMSLKASAVDEDYTPLVTYNDIKKGSVVTGKVRKVEEFGAFILVDKSSNV 1317

Query: 610  QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
             G   RS++  +   + + +Y  G  VK  ++      RRI  SF ++P+   ED
Sbjct: 1318 SGLCHRSQMADEAVKDATKLYKEGDAVKALVLEVDAVKRRI--SFGLRPSLFDED 1370


>gi|322698144|gb|EFY89917.1| rRNA biogenesis protein RRP5, putative [Metarhizium acridum CQMa
           102]
          Length = 1796

 Score =  199 bits (505), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 225/892 (25%), Positives = 388/892 (43%), Gaps = 84/892 (9%)

Query: 2   AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHS 61
           +A + K  + S  + P+  K+   + +  K   NDA     +     ++ P+FPRGGG  
Sbjct: 18  SAKNTKQGRPSKTNAPEIAKSKTAKTQPKKTSDNDARPKAPVVSLLKNEEPIFPRGGGSI 77

Query: 62  LTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPR 121
           LT  E  +I  E  A+    E    +  K +K   +RK         SL G   S +   
Sbjct: 78  LTPLEHKQIQLEAKADARREEEFDTRGGKAQKIPKKRKV--------SLKGGKTSAEEKD 129

Query: 122 YAN-----KITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIE 176
             +      +  K +  G  + G +  +N  DL + LP  L G      A+   L N ++
Sbjct: 130 SEDFVKVESLNFKKLVKGSLVLGQITRINNLDLEVALPNNLTGHVSVV-AVSEQLTNRVQ 188

Query: 177 ANE--------------DNLLPTIFHVGQLVSCIVLQLDD-----DKKEIGKRKIWLSLR 217
                            D  L ++F VGQ +   V+   D     D K   KRKI LSLR
Sbjct: 189 EAAAEQDDEEDESSDETDVDLKSMFVVGQYLRVYVVSTMDESAIGDGKNKTKRKIELSLR 248

Query: 218 LSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---V 274
            +    GL  + +     + A V S+ED G ++  G+P    FLP   +  +S ID   +
Sbjct: 249 PTETNSGLGKDDIVANSTVMASVVSVEDRGCVMDVGIPHLRAFLPHGEV--DSTIDQSRL 306

Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
           + G +    V        VV LS     +        +  +I+  +PG  V   + +I  
Sbjct: 307 QEGSVFLCQVTGKGSNGNVVQLSLQQKKLGSLKDVPTEATTINAFLPGTNVDVLITNIDR 366

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLN 392
            G+    + +   T D+ H       T+ +  Y    KV AR++   PT++   +G++L 
Sbjct: 367 RGLAGKVIGHLDVTADLVHSGAGPNGTDLEATYKVGSKVKARVVCNFPTAKEPKLGISLL 426

Query: 393 PYLL----------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTI 442
           P++           +   P   + +  + ++  V RV+  +GL +DI    +    +V I
Sbjct: 427 PHITSLTRKHPAKDNKTLPTEALPISSLVEKCTVRRVESEIGLFVDIGIAGLG--GFVHI 484

Query: 443 SDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           S V + +V  L +    Y+ GS  + R++G+  L+G      + S  +       DV  G
Sbjct: 485 SRVKDGKVDALYESSGPYQLGSVHKGRVVGYSELDGQFHLSFEKSILDQQYIRMEDVPVG 544

Query: 500 MVVKGK----VIAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            V+  +    VI  +   G I++   G+       H+S+ ++  P KKF+ G ++  RVL
Sbjct: 545 AVITCEIEKLVIKEEGVRGLILKIADGITGYVAERHLSDIKLQHPEKKFREGMKVKARVL 604

Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
                 K+I  T KKTLV S   ++ S+ +A   L   G I K++ +G  ++FY  ++GF
Sbjct: 605 STNPFKKQIRFTLKKTLVNSDAPVIKSHEDAVVGLQVPGTIIKLQPNGAHIQFYGRLKGF 664

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-------MMKPTRVSEDD 665
            P SE+      +P+  + +GQVV   I+   P  RR+ +S        + K T +    
Sbjct: 665 LPVSEMSEAYIRDPNEHFRIGQVVSVHILHVDPEQRRLIVSCKDPGAFGLDKQTALKN-- 722

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH--LEHATVMKSVIKPGYE 723
            +K+G +V+  V   T + + V ++     K  +P  HL D    ++   +K V   G  
Sbjct: 723 -LKVGEMVAAKVTQKTEDQIFVELVDSQL-KAILPVGHLTDKSPSKNQFALKRV-SAGQT 779

Query: 724 FDQLLVLD-NESSN-LLLSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFV 779
              L+V+D NE    ++L+ K SLI ++++  L S+      +++V  +V N+ +T  FV
Sbjct: 780 LSDLMVIDKNEKRRAIILTQKPSLIKASKEGKLLSNFDDAKQDAIVPAFVRNVTQTAVFV 839

Query: 780 RFLGRLTGFAPRSK-AVDGQ-RADLSKTYYVGQSVRSNILDVNSETGRITLS 829
           +F   L    P+S+   D Q + D     Y  +S+   I+ V ++  RI ++
Sbjct: 840 QFAHNLYALLPKSRLPADAQSKPDFGMHKY--ESIEVKIISVINDLRRIMVA 889



 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/281 (38%), Positives = 169/281 (60%), Gaps = 14/281 (4%)

Query: 1646 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1705
            R AE   L+   P+T  ++ERL+   P+SS +WI+YM F + ++++ KAR +AERA+++I
Sbjct: 1500 RTAE---LDAHGPQTSSDYERLLLGQPDSSKLWIQYMEFQMKVSELAKAREVAERAIKSI 1556

Query: 1706 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1765
            NIR+E EKL +WVAY  LE  YG   ++ V  VF+RA QY D  KVH  L  +Y ++E+ 
Sbjct: 1557 NIRKEEEKLKVWVAYLKLEVRYGT--KQTVEDVFKRACQYNDELKVHEELASIYIQSEKL 1614

Query: 1766 KLADELLYKMIKKF-KHSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFIS 1822
            K AD+L   M+KKF   +  VW      L   + Q +  +A++ RA   LP H     + 
Sbjct: 1615 KDADDLYESMLKKFGAKAPSVWTNYAYFLSVARNQPDRARALLPRATQRLPAHHSQNIVG 1674

Query: 1823 QTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQE--IRLGDVDLIRGLFERA 1878
            Q A LEF+  NG  +RGR+MFEG+L+ +PKR DLWS  LD E  +   D   +R ++ER 
Sbjct: 1675 QFAALEFRSPNGEPERGRTMFEGLLATWPKRGDLWSWLLDLEEGVAGSDPTAVRDVYERR 1734

Query: 1879 ISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
              +  L P + K  F++++++E+ +  + + + V  KA ++
Sbjct: 1735 TRVKGLKPNQAKKWFRRWVKWEEKLDPKGK-DKVMAKAQDW 1774



 Score = 64.7 bits (156), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 166/373 (44%), Gaps = 29/373 (7%)

Query: 126  ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPI-LDNEIEANEDNLLP 184
            ++L ++  G      V  V  + L + L   +RG   A +A D + L N++EAN      
Sbjct: 1017 LSLDSLKVGDSHIAYVNNVTPQFLWVNLSPSVRGRVSAMEASDDLSLLNDLEAN------ 1070

Query: 185  TIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIE 244
              F VG  +   V  +D +K  +      LS R S   +G+   ++++ MVL   +  + 
Sbjct: 1071 --FPVGSALKVKVKSIDAEKNRLD-----LSARSSTDSQGVDWTSLKQNMVLPGKITKVN 1123

Query: 245  DHGYILHFG-LPSFTGFLP--RNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
            +   ++    + S    LP   +N  + + ++ K   +++  +  +D   K + LS  P 
Sbjct: 1124 ERQVMVKLSDIVSGPVHLPDMADNYDDINTLNYKKNQIVRVAIVEVDANNKRLRLSMRPS 1183

Query: 302  TV--SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
             +  S     D +   +  +  G +V   V+++ + G+ ++   + T  V I +L + F 
Sbjct: 1184 RILSSTLPVADKEIADLSQVAAGDVVRGFVKNVSDKGLFVALGGHITALVKIANLSDRF- 1242

Query: 360  TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL-HNRAPPSHVKVGDIYDQS---- 414
              +WK+ +   + V  R+L VD   + V ++L    +  +  PP  V   DI + S    
Sbjct: 1243 LKDWKDHFQVDQLVKGRVLSVDSALKQVEMSLKASAVDEDYTPP--VSYNDIKEGSVVTG 1300

Query: 415  KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474
            KV +V+     +L   S  VS   +   S++A+E V+   K YKEG  V+  +L    ++
Sbjct: 1301 KVRKVEEFGAFILVDNSNNVSGLCHR--SEMADEAVKDATKLYKEGDAVKALVLEVDAVK 1358

Query: 475  GLATGILKASAFE 487
               +  LK S F+
Sbjct: 1359 RRISFGLKPSLFD 1371


>gi|307211267|gb|EFN87453.1| Protein RRP5-like protein [Harpegnathos saltator]
          Length = 1385

 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 200/345 (57%), Gaps = 22/345 (6%)

Query: 1591 RASVPPLEVNLDDEQPDMDNGISQNQGHTDEA-KTIDEKNNRHAKKKEKEEREQE----- 1644
            +  +P +  N D E PD +  ++ ++  +DE  ++  E   +  K    E REQE     
Sbjct: 1042 KPHLPEVPFNWDHE-PDSNRAVAVSETSSDEEEQSTGEPEQKKKKLSSAERREQERQKEH 1100

Query: 1645 -IRAAEE--RLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1701
             IR  E+  RL    AP + DEFE+LV SSPNS+ VW KYMA+ L  A ++K+R++A RA
Sbjct: 1101 EIRQQEKNNRLAGNHAPNSIDEFEKLVLSSPNSALVWTKYMAYNLQ-ATIDKSRAVARRA 1159

Query: 1702 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY-- 1759
            +QTIN +EE + L +W A+ N+E ++G    E++  VFQ A++  D  KV+  +L ++  
Sbjct: 1160 IQTINFQEEQQLLKVWKAWLNMEAKFGT--RESLNDVFQEAVRRADDLKVYTHMLNVFLD 1217

Query: 1760 --ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHK 1816
              ERTE  KL D     M  KFK   ++W+     LLK   ++    ++QRAL SL   +
Sbjct: 1218 MGERTELEKLID----VMTHKFKEKPEMWVDCGAALLKIGLKDKSWHIMQRALKSLRTFQ 1273

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
            H+  + Q A+LE K G  +R   +FE IL  YPKR D+W  Y+D  ++  D+DL R + +
Sbjct: 1274 HVNLVVQFALLENKLGDKERAHMLFEEILKTYPKRIDVWFTYVDCLVKTEDIDLARKVLK 1333

Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
             A+ + LP KKMK LFKKY+ +E++ G  E +  ++Q  + +VE+
Sbjct: 1334 EALCMKLPLKKMKMLFKKYVRFEEAYGTAEDLNRLEQMVINFVEN 1378



 Score =  176 bits (447), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 155/609 (25%), Positives = 286/609 (46%), Gaps = 43/609 (7%)

Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILD--------NEIEANEDNL 182
           I  GM +   ++E+ E +L+I +PGGL G  +  D  +P  D         +++++E   
Sbjct: 10  ICEGMIILCRISEITEYELIISIPGGLLGCVKLTDLSEPYTDLLQDIIHTKDVQSDEFKS 69

Query: 183 LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 242
           L  ++++G  V C V ++D D    GK    LSL   L+ + ++   +  G  +   VKS
Sbjct: 70  LSELYNLGDYVVCYVKKIDSD----GKWLYNLSLEPQLINQNVNNTNLVTGTKIVCTVKS 125

Query: 243 IEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKV--VYLSSDP 300
           IEDHGY++  G+ +   FL    ++E       PG  +  V++ I    +V  + LS+  
Sbjct: 126 IEDHGYVIDTGIANVRAFLASKYVSEEK--KYFPGNQIMCVIKEIKTVDQVSILTLSAKR 183

Query: 301 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
            TV+K  T D++  S+D L+PG  +S R+   L NG+ ++F     G ++  +L +  P 
Sbjct: 184 KTVNKVSTHDIE--SLDALMPGTKLSLRITRTLSNGLQVTFGKNNVGYLNRIYLDS--PL 239

Query: 361 TNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVD 420
           + + ND     +V   +L++ PT +    +L      + +    + +G +  ++KV+  +
Sbjct: 240 STYVND----TEVTGTLLYIMPTVKFAYFSLPT----DASDEDSLPIGGVIRKAKVLYRE 291

Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
              G++  +  + +     +  +DV    + K+   ++ GS  + +++ +  +E L    
Sbjct: 292 SN-GIIFKLTKSNLRGFVSLHRTDVP---ITKISTVFQPGSVHKCKMISYNWMEHLYVCS 347

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP-GGVKALCPLPHMSEFEIVKP 539
           ++    E   ++ +D++ G  V  K+  VD+    VQ   G +       H+S+  +   
Sbjct: 348 MEREILEQKYYSLTDLQTGDTVTVKLTKVDTKSGFVQVQVGKICGFVGPEHVSDSGLSGL 407

Query: 540 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            K  K G  +  RVL V +  + +  T K++L+KSKL +L    EA      HG I KI 
Sbjct: 408 NK-LKDGDSVEARVLNVNTDKRNVRFTLKQSLIKSKLPVLQDICEARCGQEYHGTIIKIN 466

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH-VGQVVKCRIMSSIPASRRINLSFMM 656
           K+G  VRFY  V+G+ PRS   LD      +  H +GQ V   I S      ++ L  + 
Sbjct: 467 KYGLLVRFYGDVKGWVPRSV--LDSNTSDMNWNHTIGQTVTVLIDSIEKEEGKMKLRIIT 524

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVI----AKGYSKGTIPTEHLADHLEHAT 712
              +  +   +K+G L+ G V   +   + + +     ++G   G +P  H++  LE   
Sbjct: 525 GEQKQQQSHNMKVGELIEGTVVESSLEGIHLRICKTNDSEGVVSGFLPAGHMSPCLEIGA 584

Query: 713 VMKSVIKPG 721
           ++ S   PG
Sbjct: 585 LLASKCTPG 593



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 107/498 (21%), Positives = 190/498 (38%), Gaps = 91/498 (18%)

Query: 726  QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
            ++L ++ +  N+  + K SLI S   +  D          HG +  I + G  VRF G +
Sbjct: 419  RVLNVNTDKRNVRFTLKQSLIKSKLPVLQDICEARCGQEYHGTIIKINKYGLLVRFYGDV 478

Query: 786  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
             G+ PRS  +D   +D++  + +GQ+V   I  +  E G++ L +               
Sbjct: 479  KGWVPRS-VLDSNTSDMNWNHTIGQTVTVLIDSIEKEEGKMKLRIITG------------ 525

Query: 846  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG---KVHESNDF-GVVVSFEEHSDVY 901
                E+K    Q   HN    + +EG ++ S +EG   ++ ++ND  GVV  F     + 
Sbjct: 526  ----EQK----QQQSHNMKVGELIEGTVVESSLEGIHLRICKTNDSEGVVSGFLPAGHMS 577

Query: 902  GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRK 961
              +    L  +    G  I A +  +  +          V + R        ++  K   
Sbjct: 578  PCLEIGALLASKCTPGDTISAYVFSMQPS----------VIMSRTYMTQGEYRSFDK--- 624

Query: 962  REASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS----IGYASVSDYNTQKFPQKQFLN 1017
                  L V   +   +  + ++ + + LP  ++S    + Y ++S++      Q  F+ 
Sbjct: 625  ------LKVGDCIPCTIRDITKDGVKVILPIEDYSTFGYVSYKNISNFKRLYIDQILFVK 678

Query: 1018 GQSV------IATVMALPS------------SSTAGRLLLLLKAISETETSSSKRAKKKS 1059
              ++      +   M+L               S    L L L  +SE  T+   + K  S
Sbjct: 679  ITAINKREKQLTLSMSLKELWDSPVEHGAKMLSAVDVLSLYLNKLSELATNVFYKNKPIS 738

Query: 1060 SYDVGSLVQAEITEIKP--LELRLKFGI-GFHGRIHITEVNDDKSNVVENLFSNFKIGQT 1116
            S  +G  V  EI  I    L LRLK  + G  G+ H T              S  K+G  
Sbjct: 739  SVTLGQKVTGEIERITKYGLVLRLKDNLMGVVGKDHYT--------------SEHKVGDK 784

Query: 1117 VTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDN 1176
            V   I+ K+   D     L ++S+ P ++       K L +  D  +   + G +  + N
Sbjct: 785  VFGTILWKNYIHD-----LVDVSLLPKIVNGISSKQKTLPQLPDTLV---LRGQIMMITN 836

Query: 1177 EWALLTISRHLKAQLFIL 1194
             + L+ + RH    L  L
Sbjct: 837  WFLLVLVKRHGSGYLVAL 854


>gi|195151847|ref|XP_002016850.1| GL21990 [Drosophila persimilis]
 gi|194111907|gb|EDW33950.1| GL21990 [Drosophila persimilis]
          Length = 1433

 Score =  198 bits (504), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 189/329 (57%), Gaps = 19/329 (5%)

Query: 1603 DEQPDMDNGISQNQGHTDEAKTIDEKNNR-HAKKKEKEE--REQEIRAAEERLLEKDAP- 1658
            ++  D  +   +++  T E +T   K  R  AK+K K E   EQ +R  EER  +  A  
Sbjct: 1109 NQTKDASSDEEEDEPTTAETQTNSNKKKRLSAKEKAKAEVKEEQRLREIEERNADPQARL 1168

Query: 1659 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1718
             T D++ERLV + PN+S  W+KY++F+LS  ++EKAR +A RA+ TI+ RE  E  NIW 
Sbjct: 1169 ETIDQYERLVIAQPNNSMSWLKYISFLLSNTEIEKARDLARRAIATISFREPQELRNIWS 1228

Query: 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1778
            A  ++E  YGN  +E    V + ALQ  DP + +++++ + ++  Q +    +L  ++KK
Sbjct: 1229 ALLSMELAYGNNFDE----VLKEALQSNDPLETYISVVDILKKNNQRERLSSVLVILLKK 1284

Query: 1779 FKHSCKVWLRRVQRLLKQ------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832
            FK   KVW     RL+ +      + + V +++QRAL SLP  +HI  I   A L   N 
Sbjct: 1285 FKSEPKVW-----RLVAEAYFWLGKSDQVHSLLQRALHSLPNPEHINLIVAFAKLYENND 1339

Query: 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892
              D  +++ + I++ YPKR D+WS+Y+D  I+ G +D  R + +RA+   L P+KM+ ++
Sbjct: 1340 DKDMAQTLLDDIVTSYPKRIDIWSVYVDMLIKTGQIDSARNVLDRAVQQKLKPEKMRVIY 1399

Query: 1893 KKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            KKYL  EK  G +     V Q+A E+V++
Sbjct: 1400 KKYLTLEKKHGSKATEAKVMQEAEEWVKN 1428



 Score =  101 bits (252), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 204/937 (21%), Positives = 397/937 (42%), Gaps = 97/937 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG           IHAE  +    +  G  +K  KK ++++ K +  + +L   + D
Sbjct: 8   FPRGGI----------IHAEAKSANSNIIFGATQKKAKKGQQSKAK-DSFLKELTEEYND 56

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPI 170
            +       A  + L  +   M + GVV E +   L I +PG +     +   ++A   +
Sbjct: 57  QLESA---SAETLRLDTLQEDMLVMGVVKESSAISLQIAIPGRMTARTQVGEISEAYTRV 113

Query: 171 LDNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 228
             + +  E ++ + L  +F VG +V    ++ D  K    +  + LSL+ + +++ L  +
Sbjct: 114 AQSAMAGETSDYHDLTELFPVGTIVYGKAIKTD--KPGSNRTSVLLSLKPADVHERLHHK 171

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSID 288
            +++G V +  +    +HGY++  G+   T F+      E +   +  G L      +  
Sbjct: 172 NIKKGFVFSGAISEALEHGYVIETGIQGLTAFVA----CEAAEQTLHVGQL------AFL 221

Query: 289 RTRKVVYLSSDPDTVSKCVTKDLKGI------SIDLLVPGMMVSTRVQSILENGVMLSFL 342
           + ++V + +S        V +D   I      ++D ++PG +V  +V   L++G+  S +
Sbjct: 222 KVKQVKHDASTSSCTCVHVQQDALKIKSQNESNLDYILPGSIVRFKVSKHLKDGLKGSIM 281

Query: 343 T-YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP 401
              FT  V+  H+ N   T     DY  +++ + R+L+V P ++ V LTLN  +      
Sbjct: 282 NESFTAYVNEHHMANALETP---EDYELNEEYHTRVLYVMPLTKLVYLTLNLDIKQTAED 338

Query: 402 -----PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE-- 454
                   +K G I +++KV+R+  G G++L +     +  +Y +I    +    K E  
Sbjct: 339 VEDQVEEPLKPGSIVEKAKVLRLGSG-GVVLLLNKKLKAILSYGSIKANFKGNYDKDEVL 397

Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
            KY   +  +VR+LG+  +E L       +     +++  D+ PG +V  K+I  D    
Sbjct: 398 SKYGRKTKHKVRVLGYDMIESLYYCSDDPNLVNEKLYSLEDLNPGDIVTAKMIKKDE--- 454

Query: 515 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT--VTHKKTLVKS 572
             +  G    +  L  + +   +    +++ G  +  RVL +   R T  ++++   ++ 
Sbjct: 455 --KINGWTVKIGRLNGIIDQLYLANNLRYEAGQRVRCRVLDISLDRKTCYLSNRSEYLRK 512

Query: 573 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM-YH 631
              +L+S + A +  +  G + + E     V+F +G++G   R  L      E SS+ + 
Sbjct: 513 DAKLLTSLSAAHEGGVYLGTVVRCEPGYILVKFGDGIKGVLHRQNLS-----EKSSLSFF 567

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-GSLVSGV-VDVVTPNAVVVYV 689
            GQ    RI+S      +I L+      ++ E   V++  +L +G+ + +  P       
Sbjct: 568 EGQTTTFRILSR--NKDQITLTLPEDKFQLGEICPVEITNALDAGLEMKITYPADEDEDA 625

Query: 690 IAKGYSK-------GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742
                 +       G IP+  L+DH+E     K +   G   +   +  N  S  L    
Sbjct: 626 DQDDEQEPKIEEFLGLIPSSLLSDHVELIAAQKRIHPVGSHTEAACIGQNIFS--LRDVP 683

Query: 743 YSLINSAQQLPSDASHIHPNSVVHGYVCN-----IIETGCFVRFLGRLTGFAPRSKAVDG 797
           Y     + QL +D   +    +V  YV N     +++    +R   ++     +   ++ 
Sbjct: 684 Y----FSGQLTTDWKTVQVGDIVRAYVKNVSTDQVVDLMVAIRDYNKVVKVHVKMLRLNA 739

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD----ASFMQEHFLLEEKI 853
            RA L       Q +   +L  + ET  +T+S K +   S D    A  ++ +F  +E +
Sbjct: 740 VRA-LPVDLTPDQLLYVKVLSKSVETKTLTVSAKLTDVWSGDLGETAKLVESYF--DELM 796

Query: 854 AMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG-FITHHQLAG 911
            +    K   + + K+  G  I  + +G    SND+  + + E    V    ++    AG
Sbjct: 797 QIRSVLKEKSAPIAKFDLGKTISVIFKGIDPVSNDW--LYTVEGSPKVKALLVSSLAPAG 854

Query: 912 ATV--ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
           + V  + GS   A IL +  AE L+ +S K V I+  
Sbjct: 855 SAVTPQVGSKQPAVILWIDYAEDLLLVSTKKVDIEHI 891


>gi|125776020|ref|XP_001359140.1| GA19088 [Drosophila pseudoobscura pseudoobscura]
 gi|54638882|gb|EAL28284.1| GA19088 [Drosophila pseudoobscura pseudoobscura]
          Length = 1433

 Score =  198 bits (503), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 189/329 (57%), Gaps = 19/329 (5%)

Query: 1603 DEQPDMDNGISQNQGHTDEAKTIDEKNNR-HAKKKEKEE--REQEIRAAEERLLEKDAP- 1658
            ++  D  +   +++  T E +T   K  R  AK+K K E   EQ +R  EER  +  A  
Sbjct: 1109 NQTKDASSDEEEDEPTTAETQTNSNKKKRLSAKEKAKAEVKEEQRLREIEERNADPQARL 1168

Query: 1659 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1718
             T D++ERLV + PN+S  W+KY++F+LS  ++EKAR +A RA+ TI+ RE  E  NIW 
Sbjct: 1169 ETIDQYERLVIAQPNNSMSWLKYISFLLSNTEIEKARDLARRAIATISFREPQELRNIWS 1228

Query: 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1778
            A  ++E  YGN  +E    V + ALQ  DP + +++++ + ++  Q +    +L  ++KK
Sbjct: 1229 ALLSMELVYGNNFDE----VLKEALQSNDPLETYISVVDILKKNNQRERLSSVLVILLKK 1284

Query: 1779 FKHSCKVWLRRVQRLLKQ------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832
            FK   KVW     RL+ +      + + V +++QRAL SLP  +HI  I   A L   N 
Sbjct: 1285 FKSEPKVW-----RLVAEAYFWLGKSDQVHSLLQRALRSLPNPEHINLIVAFAKLYENND 1339

Query: 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892
              D  +++ + I++ YPKR D+WS+Y+D  I+ G +D  R + +RA+   L P+KM+ ++
Sbjct: 1340 DKDMAQTLLDDIVTSYPKRIDIWSVYVDMLIKTGQIDSARNVLDRAVQQKLKPEKMRVIY 1399

Query: 1893 KKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            KKYL  EK  G +     V Q+A E+V++
Sbjct: 1400 KKYLTLEKKHGSKATEAKVMQEAEEWVKN 1428



 Score =  107 bits (267), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 206/936 (22%), Positives = 399/936 (42%), Gaps = 99/936 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG           IHAE  +    +  G  +K  KK ++++ K +  + +L   + D
Sbjct: 8   FPRGGI----------IHAEAKSANSNIIFGATQKKAKKGQQSKAK-DSFLKELTEEYND 56

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPI 170
            +       A  + L  +   M + GVV E +   L I +PG +     +   ++A   +
Sbjct: 57  QLESA---SAETLRLDTLQEDMLVMGVVKESSAISLQIAIPGRMTARTQVGEISEAYTRV 113

Query: 171 LDNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 228
             + +  E ++ + L  +F VG +V    ++   DK    +  + LSL+ + +++ L  +
Sbjct: 114 AQSAMAGETSDYHDLTELFPVGTIVYGKAIK--TDKPGSNRTSVLLSLKPADVHERLHHK 171

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSID 288
            +++G V +  +    +HGY++  G+   T F+      E +   +  G L      +  
Sbjct: 172 NIKKGFVFSGAISEALEHGYVIETGIQGLTAFVA----CEAAEQTLHVGQL------AFL 221

Query: 289 RTRKVVYLSSDPDTVSKCVTKDLKGI------SIDLLVPGMMVSTRVQSILENGVMLSFL 342
           + ++V + +S        V +D   I      ++D ++PG +V  +V  +L++G+  S +
Sbjct: 222 KVKQVKHDASTSSCTCVHVQQDALKIKSQNESNLDYILPGSIVRFKVSKLLKDGLKGSIM 281

Query: 343 T-YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAP 401
              FT  V+  HL N   T     DY  +++ +AR+L+V P ++ V LTLN   +  RA 
Sbjct: 282 NESFTAYVNEHHLANALETP---EDYELNEEYHARVLYVMPLTKLVYLTLN-LDIKQRAE 337

Query: 402 PSH------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE- 454
                    +K G I +++KV+R+  G G++L +     +  +Y +I    +    K E 
Sbjct: 338 DVEEQEEEPLKPGSIVEKAKVLRLGSG-GVVLLLNKKLKAILSYGSIKANFKGNYDKDEV 396

Query: 455 -KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
             KY   +  +VR+LG+  +E L       +     +++  D+ PG +V  K+I  D   
Sbjct: 397 LSKYGRKTKHKVRVLGYDMIESLYYCSDDPNLVNEKLYSLEDLNPGDIVTAKMIKKDE-- 454

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRIT--VTHKKTLVK 571
              +  G    +  L  + +   +    +++ G  +  RVL +   R T  ++++   ++
Sbjct: 455 ---KINGWTVKIGRLNGIIDQLYLANNLRYEAGQRVRCRVLDISLDRKTCYLSNRSEYLR 511

Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM-Y 630
               +L+S + A +  +  G + + E     V+F +G++G   R  L      E SS+ +
Sbjct: 512 KDAKLLTSLSAAHEGGVYLGTVVRCEPGYILVKFGDGIKGVLHRQNLS-----EKSSLSF 566

Query: 631 HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-GSLVSGV-VDVVTPNAVVVY 688
             GQ    RI+S      +I L+      ++ E   V++  +L +G+ + +  P      
Sbjct: 567 FEGQTTTFRILSR--NKDQITLTLPEDKFQLGEICPVEITNALDAGLEMKITYPADEDED 624

Query: 689 VIAKGYSK-------GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
                  +       G IP+  L+DH+E     K +   G   +   +  N  S  L   
Sbjct: 625 ADQDDEQEPKIEEFLGLIPSSLLSDHVELIAAQKRIHPVGSHTEAACIGQNIFS--LRDV 682

Query: 742 KYSLINSAQQLPSDASHIHPNSVVHGYVCN-----IIETGCFVRFLGRLTGFAPRSKAVD 796
            Y     + QL +D   +    +V  YV N     +++    +R   ++     +   ++
Sbjct: 683 PY----FSGQLTTDWKTVQVGDIVRAYVKNVSTDQVVDLMVAIRDYNKVVKVHVKMLRLN 738

Query: 797 GQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD----ASFMQEHFLLEEK 852
             RA L       Q +   +L  + ET  +T+S K +   S D    A  ++ +F  +E 
Sbjct: 739 AVRA-LPVDLTPDQLLYVKVLSKSVETKTLTVSAKLTDVWSGDLGETAKLVESYF--DEL 795

Query: 853 IAMLQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL-- 909
           + +    K   + + K+  G  I  + +G    SND+  + + E    V   +       
Sbjct: 796 MQIRSVLKEKSAPIAKFDLGKTISVIFKGIDPVSNDW--LYTVEGSPKVKALLVSSLAPA 853

Query: 910 -AGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
            + AT + GS   A IL +  A+ L+ +S K V I+
Sbjct: 854 GSAATPQVGSKQPAVILWIDYADDLLLVSTKKVDIE 889


>gi|328697853|ref|XP_001951020.2| PREDICTED: protein RRP5 homolog [Acyrthosiphon pisum]
          Length = 337

 Score =  197 bits (502), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/269 (39%), Positives = 162/269 (60%), Gaps = 4/269 (1%)

Query: 1645 IRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            +R  EE L + +  P+  D F+RLV S+PNSSF+WIKYMA  L   +VEKAR+ A+RAL 
Sbjct: 71   LRKVEEELTQIETNPQNADHFDRLVLSNPNSSFIWIKYMACHLQATEVEKARATAKRALS 130

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
             I+ REE EKLNIW A  NLEN YG   +E+  +    AL+  D  ++++ +L ++  + 
Sbjct: 131  IIDTREEQEKLNIWTALLNLENLYGT--KESFKQTMDEALRSNDEYQIYIKILDIFAESN 188

Query: 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKFIS 1822
            + K  +EL+ K+ +KF+ S   +L       K  + G  + ++Q+AL +LP   H+  IS
Sbjct: 189  KLKELEELITKINRKFRDSLDAYLHCATVYFKLNKPGKARFILQKALSNLPTKSHVTMIS 248

Query: 1823 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882
            + A++E  +G  +  +++FE +L+ YP R D+WS+Y+D  I+   +DL R   ERA    
Sbjct: 249  RFALVENSDGSPEEAQTLFEHVLTSYPSRIDVWSLYVDMLIKSNRIDLARHALERATIQK 308

Query: 1883 LPPKKMKFLFKKYLEYEKSVGEEERIEYV 1911
            L PKKMK LF K++  E   G  E ++ V
Sbjct: 309  LAPKKMKSLFNKWMMLEGKYGTSESVDKV 337


>gi|347970192|ref|XP_313352.5| AGAP003595-PA [Anopheles gambiae str. PEST]
 gi|333468818|gb|EAA08922.6| AGAP003595-PA [Anopheles gambiae str. PEST]
          Length = 1470

 Score =  197 bits (501), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 179/307 (58%), Gaps = 5/307 (1%)

Query: 1620 DEAKTIDEKNNRHAKKKEK-EEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFV 1677
            D+A+T+ +K    +++ E  ++ E  +R  EE L +    P TPD+F+RLV + PN+S +
Sbjct: 1160 DQAETVPKKRATASERFEAMKQEEARLRKIEEELADPSLDPHTPDQFDRLVLAQPNNSML 1219

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            WI+YMAF +  A+++KAR++  +AL+ I+ RE  E+LN+W+A  NLE  Y     ++  +
Sbjct: 1220 WIRYMAFHMESAELDKARAVGRKALKAIHFRENAERLNVWIALLNLELRYETI--DSFKE 1277

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-Q 1796
            V Q A+QY D  KV+   L +    ++ +   ++L +++KKF+    +W        +  
Sbjct: 1278 VLQEAIQYNDAFKVYTRALDILIDCQKPEEVQKILEQLLKKFRKQNDMWYLVADAWYRIG 1337

Query: 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856
            Q   V+ ++ +AL SLP   HI  I + A L  +N   D    +FE IL+ YPKRTD+WS
Sbjct: 1338 QGSKVKPLLSQALKSLPTRDHIPLILKFAFLHNRNENRDEAHLLFEQILTSYPKRTDIWS 1397

Query: 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
             Y+D  ++   V+  R + ERAI   LP K MK L+ K++ +E+  G+ E +  VK  A 
Sbjct: 1398 QYVDMLVKDNLVENARQILERAIMQRLPMKNMKTLYTKFVNFEEKHGDRESVRRVKHLAA 1457

Query: 1917 EYVESTL 1923
            EYV++ L
Sbjct: 1458 EYVQAQL 1464



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 162/701 (23%), Positives = 307/701 (43%), Gaps = 76/701 (10%)

Query: 52  PVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGS-L 110
           P  PRG    + +  R + H    + F A      +K ++ + K   +A ++  ++    
Sbjct: 6   PALPRGPSRPVVKHNRVKKHKTPKSHFGAKTLPAEQKAQRLRPKERWQAMQSEKEMEEEQ 65

Query: 111 FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADAL 167
                 G      + +    + AGM L G V ++   +L+I LPG L G+ +    ++A 
Sbjct: 66  LQQCFKG------SNLVFGKVRAGMLLLGCVKQIRATELLISLPGRLNGIVQITNISEAY 119

Query: 168 DPILDN--EIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGL 225
              L++     + +   L  ++ VG LV   VL+   D+     R+++L+L  S L+   
Sbjct: 120 SKRLEHMYNTRSTDCPTLGDLYTVGDLVYMKVLRKVKDR-----RQVYLTLDPSKLHSDF 174

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
               + EG+VL A +   EDHGY +  G+ +   FLP+ +L  N   +   G  L   + 
Sbjct: 175 KPAQLVEGLVLAATITVKEDHGYTMDIGVHNVRAFLPQEHLNGNRDDE---GRNLFCSIH 231

Query: 286 SIDRTRK---VVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV--MLS 340
           S+ ++     VV  +  PD        +++ ++++ +VPG  ++  V   +E G+  ML 
Sbjct: 232 SVTQSGSGAVVVLKAFRPDEPR---VLNVEEVAVETIVPGCQLTFTVGEPVEYGLRGML- 287

Query: 341 FLTYFTGTVDIFHLQNTFP-TTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR 399
               F  ++  +  +N     T+    Y+  K + A +L+V P +  V ++L PY  +NR
Sbjct: 288 ----FEDSITAYVNRNMLTKVTSNPEKYSMFKTLPATLLYVMPVTNEVFVSLRPY-PNNR 342

Query: 400 APPSHVK-VGDIYDQSKVVRVDRGLGLLLD--------IPSTPVSTPAYVTISDVAEEEV 450
           A       VG I ++++V   D G G+ L+        +P   +   A        +E V
Sbjct: 343 ADCGQAHMVGSIVEKARVKSTDGG-GVWLEFGNKCRALLPMGVIRKTAEAAAGGNVDESV 401

Query: 451 RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA--FEGLVFTHSDVKPGMVVKGKVIA 508
             +   ++ G+  RV ++ F  LE  +T I+  S    E ++    DV+ G   K +V+ 
Sbjct: 402 --MLSNFQVGTTHRVGVVYFDPLE--STYIVSNSPDHAETMIQDSFDVEIGKTYKCRVLQ 457

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHK 566
           + S GA+V   G V  +       ++E      K KV   +  R +  G+ +  +  T++
Sbjct: 458 LLSTGALVGV-GRVTGIV------KYEFFNRDSKLKVRDVVPMRAVCRGLDNDFLMFTNQ 510

Query: 567 KTLVKSKLAILSSYAE----ATDRLITHGWITKIEKHGCFVRFYNGVQGF--APRSELGL 620
             L+  K  IL  +++      D+    G +++I+K   +VRF+N + G   A  +  G 
Sbjct: 511 PMLLNEKAPILMHWSQLDRNRKDQKFV-GAVSQIQKSYVWVRFFNNLSGRINASVTVAGQ 569

Query: 621 DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVV 680
           D   E + +   G +    ++     +  I+L+      + + D  V+   L    V  V
Sbjct: 570 DEA-EVAKLRQ-GSIRLFTVLDFDEGANIIDLAL-----KQTSDQPVRTAQLARVTVSYV 622

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG 721
             +A    V+ +   +GTIP E  ++  EH ++   +++ G
Sbjct: 623 --HATGAEVLTENGEQGTIPAECFSEFGEHNSLYMRLLRGG 661


>gi|429328604|gb|AFZ80364.1| hypothetical protein BEWA_032170 [Babesia equi]
          Length = 366

 Score =  197 bits (500), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 177/302 (58%), Gaps = 21/302 (6%)

Query: 1635 KKEKEEREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMADV 1691
            KK + + E+++R  E+R ++ +    P+   +FERL+ ++ NSS VWI YMAF L++ D 
Sbjct: 62   KKSEYKNEEKVRELEKRNVDNEWMSNPNSVLDFERLIMTNGNSSAVWIGYMAFHLNVGDT 121

Query: 1692 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1751
            E AR    R L  I+ RE  EK N+W+AY N+E  YG    E ++ VF  A+QY D K +
Sbjct: 122  EMARKTVRRGLARIDFREMTEKQNLWLAYLNMECMYG----EDIMSVFNEAVQYNDAKTM 177

Query: 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---QQEGVQAVVQRA 1808
            +   +G++   ++ + A E+  K IKKF  S K+WL  +  L +     +EG QA  +  
Sbjct: 178  YKKAIGIFISNKKLEEAKEVCLKGIKKFGKSKKIWLLYITLLYQHIGDAEEGRQA-HKMC 236

Query: 1809 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1868
            +  +P+HK I   S TA+LE+K G  + G+  FE IL + PKRTD+W  Y+   I+L   
Sbjct: 237  INRIPKHKRIFVSSATALLEYKFGSPEIGKRYFEDILLDNPKRTDVWVQYICAHIKLHIE 296

Query: 1869 D----------LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
            D           IR LF+R I+L L PKKMK +F K+LE+E + G E+  E V++KA+ Y
Sbjct: 297  DDSKQKSERLKTIRNLFDRIITLDLKPKKMKIIFSKWLEFECNHGNEKSKEMVQRKALAY 356

Query: 1919 VE 1920
            VE
Sbjct: 357  VE 358


>gi|342179842|emb|CCC89316.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 672

 Score =  197 bits (500), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 194/345 (56%), Gaps = 16/345 (4%)

Query: 1592 ASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID----EKNNRHAKKKEKEEREQEIRA 1647
            ++ PP    L    P  D+   Q +   +E  + D    ++N   + +K +  + +E   
Sbjct: 286  SAAPPFAAGLSGNFPWRDHK-RQRRAEAEEDFSDDTGEDQENAAMSSRKMRRRKLEEAID 344

Query: 1648 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1707
            A ER +E   P +P+EF+RL+ +SPN+S++W+++M   +S+   E AR +AE+AL TI +
Sbjct: 345  AYERSMETAVPSSPEEFQRLLLASPNNSYLWVQWMTHHVSLQQYEDARLVAEKALSTIGV 404

Query: 1708 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNK 1766
            RE  E+LN+WVAY NLEN +G    E++  VF+RALQ+  D   V+  L  ++  T ++ 
Sbjct: 405  RESQERLNVWVAYMNLENLHGTA--ESLASVFKRALQHALDELVVYERLADIFGATHKSA 462

Query: 1767 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825
                L   M+ K++   + W R    L+ Q +++ ++ V++    +L R ++   +    
Sbjct: 463  QLLSLCRTMVSKYRKVPRTWERLGTVLIDQNRRDLLKRVLKDMNGALRRDEYAVTVVHLG 522

Query: 1826 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERA 1878
            + E++NG  +  R++FEG+L   PK++D+WS+YLDQE+ L         V  +R LFERA
Sbjct: 523  VHEYRNGSVENARALFEGLLLRMPKKSDVWSVYLDQELGLLARRAESSSVAFVRSLFERA 582

Query: 1879 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
            ++ S   K M+ +  +++ +E+  G    +E VK +A  YVE+ +
Sbjct: 583  VATSFSAKIMQQILTRFMSFERVHGTPADVERVKARARSYVEAKI 627


>gi|384487023|gb|EIE79203.1| hypothetical protein RO3G_03908 [Rhizopus delemar RA 99-880]
          Length = 861

 Score =  197 bits (500), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 157/555 (28%), Positives = 277/555 (49%), Gaps = 44/555 (7%)

Query: 122 YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDN----- 173
           +  ++T K ++ G  L G ++ +NE +L + LP  L G   +   +DAL  I+       
Sbjct: 100 HIEQLTFKKLTVGTCLLGCISRINELELFVSLPHQLVGVIPITEVSDALSDIIQRIADED 159

Query: 174 -EIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQE 232
            + E ++   L  +FHVGQ + C ++ L    +E  K+ I LSL+ + + + +    V  
Sbjct: 160 EDEEESKMPKLNDLFHVGQWIRCKIISLPA-VEEKSKKPIELSLKPNTVNEDMVKVDVTP 218

Query: 233 GMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSI 287
           G+ L A VKS+EDHGY+L  G+   TGFLP+          N   ++  G  ++ +V   
Sbjct: 219 GVTLGASVKSVEDHGYVLDLGVKDLTGFLPKKEAKAYIEKYNRDEELAVGQYVECLVEK- 277

Query: 288 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
            +  + V+++ D   ++  V +D     I  ++PG  VS  V+++  NG+ L  +  ++ 
Sbjct: 278 -KNNRTVHVTIDRSKIASSVVEDPFS-RITSILPGQRVSGVVEAVQANGLALKMMGLYSS 335

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYLLHNRAP--PS 403
           T+D  H+ +     + ++ +   +KV  R LF  ++   +A+G ++  + L    P   +
Sbjct: 336 TIDASHIPSNM---DIESSFKLGQKVVFRTLFTILNTEEKAIGGSILAHALDLDVPTLAN 392

Query: 404 HVK----VGDIY------DQSKVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
            VK    VGD++      + +KV RV +  + + LD      S   YV IS +A+E V  
Sbjct: 393 GVKSDKFVGDVFPAGSFLENTKVYRVSNSSVWVTLDGLD---SITGYVHISRLADERVPS 449

Query: 453 LEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
           L      Y+ G+  R R+L +  ++ +    L+ S         +D++ G +V+G V  +
Sbjct: 450 LSATAGDYRIGTTHRARVLSYNPVDAMLVLTLQPSVLAEKYLRVTDIEVGSMVEGVVEKI 509

Query: 510 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKK 567
              G I++    + AL P  H+++ ++  P  KFKVG +   RVL V  +R  I +T KK
Sbjct: 510 IPAGVILKLSKSISALVPAAHLADVKLSHPEYKFKVGKKFQCRVLKVDGERQKIILTLKK 569

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
           +L+ S+  I  + A+     I+HG IT I+ +GC + +YNGV  F P  E+         
Sbjct: 570 SLINSEFPIFQNMADCHVGDISHGVITAIKNNGCIIGYYNGVSAFVPGGEMTEAHVPNLG 629

Query: 628 SMYHVGQVVKCRIMS 642
           +++HVGQ VK  ++S
Sbjct: 630 TVFHVGQTVKTTVLS 644



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 108/212 (50%), Gaps = 25/212 (11%)

Query: 630 YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----VKLGSLVSGVVDVVTPNAV 685
           Y +G   + R++S  P    + L+  ++P+ ++E  L    +++GS+V GVV+ + P  V
Sbjct: 457 YRIGTTHRARVLSYNPVDAMLVLT--LQPSVLAEKYLRVTDIEVGSMVEGVVEKIIPAGV 514

Query: 686 VVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-------QLLVLDNESSNL 737
           ++  ++K  S   +P  HLAD  L H         P Y+F        ++L +D E   +
Sbjct: 515 ILK-LSKSIS-ALVPAAHLADVKLSH---------PEYKFKVGKKFQCRVLKVDGERQKI 563

Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
           +L+ K SLINS   +  + +  H   + HG +  I   GC + +   ++ F P  +  + 
Sbjct: 564 ILTLKKSLINSEFPIFQNMADCHVGDISHGVITAIKNNGCIIGYYNGVSAFVPGGEMTEA 623

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
              +L   ++VGQ+V++ +L V++E  ++ +S
Sbjct: 624 HVPNLGTVFHVGQTVKTTVLSVDAEKNKMIVS 655



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 4/164 (2%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
            ++ D+    +V+G V+ +   G  + LS+ + A V  ++L+D  +  PE +F +GK    
Sbjct: 492  RVTDIEVGSMVEGVVEKIIPAGVILKLSKSISALVPAAHLADVKLSHPEYKFKVGKKFQC 551

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
            RVL V+   +++ +TLK   S   S+  I  N+++ HVGDI  G I  +++ G  I   N
Sbjct: 552  RVLKVDGERQKIILTLK--KSLINSEFPIFQNMADCHVGDISHGVITAIKNNGCIIGYYN 609

Query: 1480 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
              +       E++E HV N+ T++  G+ VK  +L VD EK ++
Sbjct: 610  -GVSAFVPGGEMTEAHVPNLGTVFHVGQTVKTTVLSVDAEKNKM 652



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 49/81 (60%)

Query: 1359 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1418
            L +  D+   +  QGY+ N+T  G F+ L++ + A+V + NL+D +V+  +  + +G  V
Sbjct: 710  LSEFSDVRRGVCYQGYISNITDAGVFLQLNKTISARVKIGNLNDEFVKDWKSLYQVGNTV 769

Query: 1419 AGRVLSVEPLSKRVEVTLKTS 1439
              R++ ++  SKR+E +LK S
Sbjct: 770  QTRIIHIDRESKRLEASLKKS 790


>gi|71650829|ref|XP_814104.1| rRNA biogenesis protein [Trypanosoma cruzi strain CL Brener]
 gi|70879049|gb|EAN92253.1| rRNA biogenesis protein, putative [Trypanosoma cruzi]
          Length = 669

 Score =  196 bits (499), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 191/330 (57%), Gaps = 19/330 (5%)

Query: 1603 DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD 1662
            + + D ++ I  N G TD       KN    +K  K + E+ I A E R +E   P +PD
Sbjct: 310  ETESDENDSIDDNDGTTD-------KNGGREQKLRKRKIEEAIDAYE-RSMETTVPSSPD 361

Query: 1663 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1722
            EF RL+ ++PN+S++W+++MA  +++   E+AR +AE+AL TI +RE  E+LN+WVAY N
Sbjct: 362  EFRRLLLAAPNNSYLWVQWMAHHVALQQQEEARLVAEKALSTIGVRETQERLNVWVAYMN 421

Query: 1723 LENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1781
            LEN +G    E++  VF+RALQ   D   V+  L  ++  T +      L   M+ KF++
Sbjct: 422  LENIHGT--VESLSAVFKRALQRAPDQLVVYERLADIFSATRKPNQLLALCRNMVSKFRN 479

Query: 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
              + W R  + L+ Q +++ ++ +V+    +L R  +   + + A+ E+K+G  + GR++
Sbjct: 480  EQRTWERLGKVLIDQKKRDQLRRMVKDMGGALRRDAYSLTVVRLAVHEYKSGSVENGRAL 539

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERAISLSLPPKKMKFLFK 1893
            FEG++   PK++D+WS YLDQE+ L         V L+R L ERA++ +   K M+    
Sbjct: 540  FEGLVVRMPKKSDVWSAYLDQEMALLVRRDESAAVPLVRALLERAVATNFSAKVMQQFLT 599

Query: 1894 KYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
            +++ +E++ G    +E VK +A  YVE+ +
Sbjct: 600  RFMSFERAYGSPADVEKVKTRARSYVEAKI 629


>gi|194770786|ref|XP_001967469.1| GF20724 [Drosophila ananassae]
 gi|190618479|gb|EDV34003.1| GF20724 [Drosophila ananassae]
          Length = 1424

 Score =  196 bits (498), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 184/328 (56%), Gaps = 18/328 (5%)

Query: 1598 EVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEE--REQEIRAAEERLLEK 1655
            + N  DE  D D   +Q            +K    AK+K K E   EQ +R  EER  + 
Sbjct: 1105 KTNSSDEDEDQDAAEAQPA----------KKKRLSAKEKAKAEVREEQRLREIEERNADP 1154

Query: 1656 DAP-RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1714
             A   T D++ERLV + PN+S  W+KY+AF+LS  ++EKAR +A RA+ TI+ RE  E  
Sbjct: 1155 KARLETIDQYERLVIAQPNNSISWLKYIAFLLSNTEIEKARDLARRAISTISFRETQELR 1214

Query: 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1774
            N+W A  N+E  YG+  +E    V + AL+  DP ++++ ++ + ++ +Q +     L  
Sbjct: 1215 NVWSALLNMELAYGSNFDE----VLKEALKCNDPLEIYICVVDILKKNKQRERLSSTLTT 1270

Query: 1775 MIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833
            ++ KFK   ++W    +      + + V +++QRAL  LP  +HI  I   A L  +N  
Sbjct: 1271 ILNKFKAQARIWPVVAEAYFWLGKSDQVHSLLQRALKVLPNQEHINCIVSFAKLYARNDA 1330

Query: 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1893
             D  +++ + +++ YPKR D+WS+Y+D  I+ G VD  R + ERA+   L P KM+ ++K
Sbjct: 1331 NDMAQTLLDDVVTSYPKRIDIWSVYVDMLIKAGLVDSARNVLERAVLQKLKPNKMQVIYK 1390

Query: 1894 KYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            KYL+ E + G E  +  VKQ+A ++V++
Sbjct: 1391 KYLQLELNHGTEASVAKVKQQAEQWVKN 1418



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 193/870 (22%), Positives = 350/870 (40%), Gaps = 86/870 (9%)

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPILDNEIEANE 179
           A  + +  +   M + GVV  V    L + LPG +      AD   A   +    +  + 
Sbjct: 63  AETLNMDTLQEDMLVMGVVKGVTPTALQVALPGRMFARTLVADISEAYTRVAKAAMSGDT 122

Query: 180 DNL--LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLT 237
            +   L  +F  G++V    ++ D  K    +  + LSL+ S ++  L  + +++G + +
Sbjct: 123 TDYHDLTELFQPGRIVYGRAIKTD--KLNCNRTTLLLSLKPSEVHSSLHHKNIKKGFIFS 180

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVVYL 296
             V+ I++HGY++  G+     F+      E S   +  G L    V+ I   T K    
Sbjct: 181 GAVEEIQEHGYVIETGVQGLQAFVA----CEESKQSLHVGQLAFVKVQQIQHDTHKSTCT 236

Query: 297 SSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFHLQ 355
               D  S+   K     ++D ++PG +V  +V   L++G+  S +   F    +  HL 
Sbjct: 237 CVLVDQ-SQLKVKSQNESNLDYILPGSIVRFKVSKHLKDGLKGSIMNESFAAYTNEHHLA 295

Query: 356 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH----------- 404
           +   T    + Y  ++   AR+L+V P ++ V LTLN   L  +  P             
Sbjct: 296 SPLDTL---DAYELNQDYYARVLYVMPLTKLVYLTLN---LDIKTDPETGIQQDDADGDE 349

Query: 405 ----VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYK 458
               +KVG + +++KV+R+  G G++L +        ++ +I    +    K E   KY 
Sbjct: 350 ELEPLKVGSVVEKAKVLRLGSG-GVVLLLNKKLKGIISFKSIRSNYKGNYDKDEVLSKYG 408

Query: 459 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV-DSFGAIVQ 517
             +  +VRILG+  +E +       +     VF+ +D+  G +V  K++   D       
Sbjct: 409 RKTKHKVRILGYDVIESMYYCSDAPNVVNEKVFSLTDISAGDIVTAKIVKKNDKINGWTL 468

Query: 518 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLA 575
             G V A     +++      P  +++ G  L  RVL V S R    ++++   +   L 
Sbjct: 469 KIGKVNATLEQLYLA------PNVRYEAGQPLRCRVLEVNSDRKICYLSNRSEYLAKGLK 522

Query: 576 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
           +L+  + A    +  G + + + H   V+F +G++G   R  +      +  S +  GQ 
Sbjct: 523 LLTDLSSAQVGGVYTGTVVRCDDHLVLVKFGSGIEGVLYRQNM------KGQSSFFEGQT 576

Query: 636 VKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS 695
            K RI+S      +I L+      ++ E   V++ + +   +++    A           
Sbjct: 577 TKFRILSR--NKDKITLTLPEDKFQLGEICPVEITNTLDAGLEIKITYAAEEDKEDDEED 634

Query: 696 K--------GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 747
                    G IP   L+DHLE       V   G   +   ++ N  S  L    Y    
Sbjct: 635 GDPKVEEFVGLIPLRLLSDHLELLQAQVRVHPVGSLTEAACIVQNIFS--LRDVAY---- 688

Query: 748 SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF-APRSKAVDGQRADLSKTY 806
            + Q+  D   +    ++  YV N  E    V  +  +  +  P    V   R +  K  
Sbjct: 689 FSGQITKDWKSVQVGDIIRSYVKNATEQ--VVDLMVSVRNYNKPVKVHVKMLRLNAVKNT 746

Query: 807 YV----GQSVRSNILDVNSETGRITLSLKQSCCSS---TDASFMQEHFLLEEKIAMLQSS 859
            V     Q +   +L    ET  +T+S K +   S   TD +   E +L  +++A +++ 
Sbjct: 747 PVELVPEQLLMVKVLSKEPETKTLTVSAKLTDVWSGDLTDTAKSVERYL--DEVAQIRTG 804

Query: 860 KHNGSE--LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV-ES 916
               S    K+  G  I  V +G   ES+D+  V + E  S     +       AT   +
Sbjct: 805 LKEISAPIAKYSVGEKINVVFQGINSESHDW--VYTVEGSSKTSALLLSSLAGTATAPPT 862

Query: 917 GSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
           GS   A +L V  +  ++ +S K V IDR 
Sbjct: 863 GSKHPAVVLWVDYSSDVLLISNKKVDIDRI 892


>gi|343470403|emb|CCD16896.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 672

 Score =  196 bits (498), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 194/345 (56%), Gaps = 16/345 (4%)

Query: 1592 ASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID----EKNNRHAKKKEKEEREQEIRA 1647
            ++ PP    L    P  D+   Q +   +E  + D    ++N   + +K +  + +E   
Sbjct: 286  SAAPPFAAGLSGNFPWRDHK-RQRRAEAEEDFSDDNGEDQENAAMSSRKMRRRKLEEAID 344

Query: 1648 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1707
            A ER +E   P +P+EF+RL+ +SPN+S++W+++M   +S+   E AR +AE+AL TI +
Sbjct: 345  AYERSMETAVPSSPEEFQRLLLASPNNSYLWVQWMTHHVSLQQYEDARLVAEKALSTIGV 404

Query: 1708 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNK 1766
            RE  E+LN+WVAY NLEN +G    E++  VF+RALQ+  D   V+  L  ++  T ++ 
Sbjct: 405  RESQERLNVWVAYMNLENLHGTA--ESLASVFKRALQHALDELVVYERLADIFGATHKSA 462

Query: 1767 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825
                L   M+ K++   + W R    L+ Q ++E ++ V++    +L R ++   +    
Sbjct: 463  QLLSLCRTMVSKYRKVPRTWERLGTVLIDQNRRELLKRVLKDMNGALRRDEYAVTVVHLG 522

Query: 1826 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERA 1878
            + E++NG  +  R++FEG+L   PK++D+WS+YLDQE+ L         V  +R LFERA
Sbjct: 523  VHEYRNGSVENARALFEGLLLRMPKKSDVWSVYLDQELGLLARRAESSSVAFVRSLFERA 582

Query: 1879 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
            ++ +   K M+ +  +++ +E+  G    +E VK +A  YVE+ +
Sbjct: 583  VATNFSAKIMQQILTRFMSFERVHGTPADVERVKARARSYVEAKI 627


>gi|402584047|gb|EJW77989.1| hypothetical protein WUBG_11104, partial [Wuchereria bancrofti]
          Length = 345

 Score =  196 bits (498), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/271 (38%), Positives = 169/271 (62%), Gaps = 6/271 (2%)

Query: 1645 IRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1703
            + A E ++LE D  P   ++F+RLV  SPNSS +WI+Y+ F L   D++KAR++AERAL 
Sbjct: 75   LMARERKILEADWIPDNTNDFDRLVTGSPNSSILWIRYITFFLEQNDIDKARAVAERALS 134

Query: 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE 1763
             IN REE+E  N+W AY NLE  +G    E++  VF  A++  DP K++  ++ +Y++ E
Sbjct: 135  VINFREEDEIFNVWTAYLNLEGNFGT--NESLKAVFANAVRNTDPLKMYKQMVKIYQKLE 192

Query: 1764 QNKLADELLYKMIKKFKH-SCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFI 1821
            + +  D+LL +M+K+F+H    VW    Q LL+ ++ +  + ++++A+  L R  H+  +
Sbjct: 193  KIEEIDDLLEEMLKRFRHDDLDVWFIYGQHLLETKRPDKARNLMKKAINCLQRKHHVTIL 252

Query: 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881
            S+ A LEFK G  ++ +++FE IL+ YPK+TD+W++Y+D  I+   +D  R L ER  +L
Sbjct: 253  SRFAQLEFKFGDMEQSKTIFESILNSYPKKTDVWTVYIDLLIKAEKIDDARQLLERVTAL 312

Query: 1882 SLPPKKMKFLFKKYLEYEKS-VGEEERIEYV 1911
             L   K++  +K  L + KS V    R  YV
Sbjct: 313  KLSTHKIRLFYKNGLIWNKSMVMRSNRTMYV 343


>gi|17552198|ref|NP_498398.1| Protein LET-716 [Caenorhabditis elegans]
 gi|351047543|emb|CCD63223.1| Protein LET-716 [Caenorhabditis elegans]
          Length = 1743

 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/266 (37%), Positives = 166/266 (62%), Gaps = 5/266 (1%)

Query: 1659 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1718
            ++ ++  RLVRS PNS+  WI+YM+  +  +D+  AR  AE AL  IN  E +E L IW 
Sbjct: 1470 KSEEDHSRLVRSDPNSAINWIEYMSHFIEKSDLAAARKTAEEALGAINPTESDELLKIWT 1529

Query: 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1778
            AY N+E  YG+     V KVF+RA +  +   VH  L  +Y++ E+N  A ++L +M+KK
Sbjct: 1530 AYLNMEVAYGDAA--TVQKVFERACKNANAYTVHKTLSKIYQKFEKNAEATQILEQMVKK 1587

Query: 1779 FK-HSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVAD 1835
            F+ +  +VW    + L+ Q  Q+  + ++ RAL S P+  +H++ IS+ A LEFK+G A+
Sbjct: 1588 FRANQLEVWTLLAEHLMTQNDQKAARELLPRALKSAPKAQQHVQLISKFAQLEFKHGDAE 1647

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            RGR++ EG+++ +PK+TDLW +Y +  ++   ++  R + ERA +L     KM+ L+KK+
Sbjct: 1648 RGRTLLEGLVTAHPKKTDLWLVYAEAVLKHLGIEHARKVLERACNLGFSIHKMRPLYKKW 1707

Query: 1896 LEYEKSVGEEERIEYVKQKAMEYVES 1921
            LE E   G+   +E VK KA +++++
Sbjct: 1708 LEMESKHGDAAAVELVKAKAEKFLQA 1733



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 187/889 (21%), Positives = 352/889 (39%), Gaps = 105/889 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG      ++ +   + +++F   + GL +K+   ++   +KA E           
Sbjct: 13  FPRGGGS-----DKPKPLNKSNSDFVGTKGGLKRKSAAPEQHEAKKAKEE---------- 57

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDN 173
             S  +P+      ++    G+  +GVV+EV +  +++   G       A++        
Sbjct: 58  --SSWIPKVEENCFIE----GLTGFGVVSEVFDDGVLLHTAGTHTVKIHASEVSKKF--T 109

Query: 174 EIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEG 233
           E+   E   +   F +GQ+V   V+     K+   K K+  +   + L K LS   +  G
Sbjct: 110 ELFNEEKIEIKNAFQLGQMVPFRVIS---KKQGNDKGKVKGTCNPARLNKHLSPNMLAAG 166

Query: 234 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKV 293
           +VL   V SIE+ G IL  GL   TGF+ ++         +K G+ L  +VR +  T +V
Sbjct: 167 LVLHTAVVSIEEKGAILDVGLDQITGFIEKSQF---PAAGLKEGMPL--IVRVLSSTSRV 221

Query: 294 VYLSS----DPDTVSKCVTKDLKGISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGT 348
           V ++S    D   ++ C     + + ++ L+PG ++        +  GV+++      G 
Sbjct: 222 VKVTSFVEQDNLNMTSC-----EKLQLNHLMPGTILECEPTGDAVTAGVIVNIGNGLKGI 276

Query: 349 VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPS 403
           +     +   P    +N     K + A ++F    S+ + L  +P +     +  R    
Sbjct: 277 LP----RRNLPPRLRENPEKLGKAIRAIVMFCQQNSKILVLNAHPDIVAASRIEKRTSFE 332

Query: 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSC 462
            + +GD    + +  +     +   +P+          +S     E+  ++  +Y+ G+ 
Sbjct: 333 GISIGDKVKCTVIDVLPTKSMVYFALPAIDGKKSLVTAVSSRGLLEKPDQVSTEYEVGTE 392

Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
              R+ GFR+ +   T   +       +  + D K G V+  +V  V   G        V
Sbjct: 393 KLCRVTGFRYADRSITISTRKDILNQKITKYQDAKCGDVLDARVHHVAKSGVYFMVCNFV 452

Query: 523 KALCPLPHMSEFEIVKPGKK----FKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
           KA  PL  +S+  +  P +K    +KVG E+  RV  +  + K + VT +++++  K   
Sbjct: 453 KAFAPLSMLSDKPL--PAQKMKNIYKVGTEVKCRVWQICDERKNLIVTCRESILGLKSPS 510

Query: 577 LSSYAEATDRLITHGWITKIEKHGC-FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
           ++S  E    +     I K+   G   +  +N + G   +      PG   ++ + V  V
Sbjct: 511 VNSVQELEIGVTVPCVIRKVFPTGVLLLGTFNNICGVLRKESAVHLPGTPKNNDFVVANV 570

Query: 636 VKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY---VIAK 692
            K      +   R +N S  +   + SE  LV+  +   G + +       +Y   + AK
Sbjct: 571 EKIEDNRVVFVLRDVNPSAAVANGQNSEKKLVQRPNPADGGISIGK-----IYKGSLCAK 625

Query: 693 GYSKGTIPTEHLADHLEHATVMKSVIK-----PGYEFDQLLVLDNES-SNLLLSAKYSLI 746
              K  +          +A+V   ++      P     +LL+ + E  S ++   K + I
Sbjct: 626 AGEKANVTFTGEGKKEVYASVDDHLLSDLLDAPIGLTKRLLIENKEDISTIVPMGKMAAI 685

Query: 747 NSA------------QQLPSDASHIHPNSVVHGYVCNII-ETGCFVRFLGRLTGFAPRSK 793
           N A             +LP     +    V+ G V  +I   G FV  +G   G     K
Sbjct: 686 NRACVKRSVASFVKGMKLPKKIDELKVGKVIVGIVGQVITNVGVFVELVG---GSGLVGK 742

Query: 794 AVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEK 852
            ++ + A + S+   VGQ +   I  +++        L   C        M + + L   
Sbjct: 743 VLERKNAKNTSELLEVGQVIVGTIESIDTTKKSF---LIDPCTDLETGELMLKKYAL--- 796

Query: 853 IAMLQSSKHNGSELKWVEGF----IIGSVIEGKVHESNDFGVVVSFEEH 897
             +L+S      E+KW+       I GS + GKV +  D   +V FE +
Sbjct: 797 -PLLESIVE---EVKWLAEQSNYPIPGSKVNGKVTKELDDLTLVEFEHN 841


>gi|407843923|gb|EKG01697.1| rRNA biogenesis protein, putative [Trypanosoma cruzi]
          Length = 669

 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 188/326 (57%), Gaps = 19/326 (5%)

Query: 1607 DMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFER 1666
            D ++ I  N G TD       KN    +K  K + E+ I A E R +E   P +PDEF R
Sbjct: 314  DENDSIDDNDGATD-------KNGGREQKLRKRKIEEAIDAYE-RSMETAVPSSPDEFRR 365

Query: 1667 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1726
            L+ ++PN+S++W+++MA  +++   E+AR +AE+AL TI +RE  E+LN+WVAY NLEN 
Sbjct: 366  LLMAAPNNSYLWVQWMAHHVALQQQEEARLVAEKALSTIGVRETQERLNVWVAYMNLENI 425

Query: 1727 YGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV 1785
            +G    E++  VF+RALQ   D   V+  L  ++  T +      L   M+ KF++  + 
Sbjct: 426  HGT--VESLSAVFKRALQRAPDQLVVYERLADIFSATRKPNQLLALCRNMVSKFRNEQRT 483

Query: 1786 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1844
            W R  + L+ Q +++ ++ +V+    +L R  +   + + A+ E+K+G  + GR++FEG+
Sbjct: 484  WERLGKVLIDQKKRDQLRRMVKDMGGALRRDAYSLTVVRLAVHEYKSGSVENGRALFEGL 543

Query: 1845 LSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1897
            +   PK++D+WS YLDQE+ L         V  +R L ERA++ +   K M+    +++ 
Sbjct: 544  VVRMPKKSDVWSAYLDQEMALLVRRDESAAVPFVRALLERAVATNFSAKVMQQFLTRFMS 603

Query: 1898 YEKSVGEEERIEYVKQKAMEYVESTL 1923
            +E++ G    +E VK +A  YVE+ +
Sbjct: 604  FERAYGSPADVEKVKTRARSYVEAKI 629


>gi|308499240|ref|XP_003111806.1| CRE-LET-716 protein [Caenorhabditis remanei]
 gi|308239715|gb|EFO83667.1| CRE-LET-716 protein [Caenorhabditis remanei]
          Length = 1758

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/266 (37%), Positives = 166/266 (62%), Gaps = 5/266 (1%)

Query: 1659 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1718
            ++ +E  RLVRS PNS+  WI+YM+  +  +D+  AR  AE AL+ IN  E  E L +W 
Sbjct: 1485 KSEEEHSRLVRSDPNSAINWIEYMSLFVEKSDLTAARKTAEEALEAINPTESEELLKMWT 1544

Query: 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1778
            A+ N+E  YG+     V KVFQRA +  +   +H  L  ++++ E+N  A ++L +M+KK
Sbjct: 1545 AFLNMEVAYGD--STTVEKVFQRACKNANAYTIHKTLAKIHQKFEKNAEATQILEQMVKK 1602

Query: 1779 FK-HSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVAD 1835
            F+ +  +VW    + L+ Q+ Q+  + ++ RAL S P   +HI+ IS+ A LEFK G A+
Sbjct: 1603 FRANKLEVWTLLAEHLMTQKDQKAARDLLPRALKSAPNAQQHIQLISKFAQLEFKFGDAE 1662

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            RGR++ EG+++ +PK+TDLW +Y D  ++   ++  R + ERA +L +   KM+ L+KK+
Sbjct: 1663 RGRTLLEGLVTAHPKKTDLWLVYADAALKHLGIEHARKILERACNLEMSVHKMRPLYKKW 1722

Query: 1896 LEYEKSVGEEERIEYVKQKAMEYVES 1921
            LE E   G+   ++ VK KA +++++
Sbjct: 1723 LEMESKHGDAAAVQLVKSKAEKFLQA 1748



 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 128/525 (24%), Positives = 219/525 (41%), Gaps = 63/525 (12%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKK------NKKKKKKTERKANETVDDL 107
           FPRGGG    +  ++       ++F + ++GL +K      N+ KK K +      V++ 
Sbjct: 13  FPRGGGSDKPKPSKNST-----SDFHSAKQGLKRKSAAPEQNEAKKVKEDSSWFPKVEE- 66

Query: 108 GSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADAL 167
            + F DG++G                     GVVAEV E  +V+   G       A++  
Sbjct: 67  -NCFIDGLTG--------------------LGVVAEVFEDGVVLHTAGTHTVKIHASEVS 105

Query: 168 DPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLS 226
                 E+   E   +   F VGQ++   V+     KK IG K K   S   S L K LS
Sbjct: 106 KKF--TELFNAEKIEMKDAFQVGQMIPFRVIT----KKTIGDKGKAKASCNPSKLNKHLS 159

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRS 286
              +  G+V+   V SIE+ G IL  GL   TGF+ ++     SG+  K GL L  VVR 
Sbjct: 160 PNMLVAGLVINTSVISIEEKGAILDVGLDQMTGFIEKSQFPA-SGL--KEGLPL--VVRI 214

Query: 287 IDRTRKVVYLSS--DPDTVSKCVTKDLKGISIDLLVPGMMVSTR-VQSILENGVMLSFLT 343
           +  T +V+ ++S  + D ++    + L+   ++ L+PG ++        +  GV++    
Sbjct: 215 LSTTSRVIKVTSFVEQDNLNMATCEKLQ---LNHLMPGTILECEPTGDAVTAGVIVHIGN 271

Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHN 398
              G +     +   P    +N     K + A ++F    S+ + L  +P +     +  
Sbjct: 272 GLKGILP----RRNLPPRLRENPEKLGKAIRAVVMFCQQNSKILVLNAHPDIVAVSRIEK 327

Query: 399 RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE-EEVRKLEKKY 457
           R     + +GD    + +  +     +   +P T         +S     E+   +  +Y
Sbjct: 328 RTSFEGISIGDKVKCTVIDAIPTKSIVYFTLPPTDGKKSLVTAVSSRGLLEKPDAVASEY 387

Query: 458 KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
           + G+    R++GFR+ +   T   +       + T+ D K G ++ G+V  V   G    
Sbjct: 388 EVGTEKLCRVIGFRYADRTITVSTRKDILNQKITTYQDAKCGDILDGRVHHVTKSGVYFM 447

Query: 518 FPGGVKALCPLPHMSEFEIVKPGKK--FKVGAELVFRVLGVKSKR 560
               VKA  PL  +S+  +  P  K  FKVG E+  RV  +  +R
Sbjct: 448 VCNFVKAFAPLSLLSDKPLTVPKIKSMFKVGTEMKCRVWQICEQR 492



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 149/366 (40%), Gaps = 73/366 (19%)

Query: 312 KGISIDLLVPGMMVSTRVQSILENGVMLSF-LTYFTGTVDIFHLQNTFPTTNWKNDYNQH 370
           K +S ++LV G++++T V SI E G +L   L   TG ++    ++ FP +  K      
Sbjct: 156 KHLSPNMLVAGLVINTSVISIEEKGAILDVGLDQMTGFIE----KSQFPASGLKEGL--- 208

Query: 371 KKVNARILFVDPTSRAVGLT-------LN----PYLLHNRAPPSHV----KVGDIYDQSK 415
             +  RIL    TSR + +T       LN      L  N   P  +      GD      
Sbjct: 209 -PLVVRIL--STTSRVIKVTSFVEQDNLNMATCEKLQLNHLMPGTILECEPTGDAVTAGV 265

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR---- 471
           +V +  GL  +L   + P                 R  E   K G  +R  ++  +    
Sbjct: 266 IVHIGNGLKGILPRRNLPP----------------RLRENPEKLGKAIRAVVMFCQQNSK 309

Query: 472 ------HLEGLATG-ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF---PGG 521
                 H + +A   I K ++FEG+         G  VK  VI      +IV F   P  
Sbjct: 310 ILVLNAHPDIVAVSRIEKRTSFEGISI-------GDKVKCTVIDAIPTKSIVYFTLPPTD 362

Query: 522 VKALCPLPHMSEFEIVKP---GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAI 576
            K        S   + KP     +++VG E + RV+G +   + ITV+ +K ++  K+  
Sbjct: 363 GKKSLVTAVSSRGLLEKPDAVASEYEVGTEKLCRVIGFRYADRTITVSTRKDILNQKI-- 420

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS--SMYHVGQ 634
            ++Y +A    I  G +  + K G +    N V+ FAP S L   P   P   SM+ VG 
Sbjct: 421 -TTYQDAKCGDILDGRVHHVTKSGVYFMVCNFVKAFAPLSLLSDKPLTVPKIKSMFKVGT 479

Query: 635 VVKCRI 640
            +KCR+
Sbjct: 480 EMKCRV 485


>gi|145544753|ref|XP_001458061.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425880|emb|CAK90664.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1495

 Score =  195 bits (495), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 155/251 (61%), Gaps = 10/251 (3%)

Query: 1663 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1722
            E+E+ + ++PNSS +WI+++A+      +E AR++ ERAL+ IN   E E+LN+W AY N
Sbjct: 1180 EYEKKILTNPNSSVIWIEFVAYAAENEGIESARNVIERALRVINFSNELERLNLWTAYLN 1239

Query: 1723 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1782
            LE  +G+  E+ ++ +F+R  Q CD KK+H+ L+ +Y + E+  L  EL    ++K+K S
Sbjct: 1240 LEFNFGS--EDNLINIFKRGCQNCDGKKLHIKLINIYRKAEKVDLTVELSRSFVQKYKQS 1297

Query: 1783 CKVWLRRVQRLLKQQ--------QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
            CK W+  +Q L++ Q        Q   +  + RA+  L + K +K +S    L+F+N   
Sbjct: 1298 CKSWMEFLQSLMEWQKVHDDENPQYSFKDTLNRAMQCLKKSKQVKLLSFYGRLQFQNNQI 1357

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
            + G++ +E IL +   RTD+WS YLD  I+    D++R +F++AI  +  P+K+KFLFKK
Sbjct: 1358 EEGKTTYETILDKNSTRTDIWSQYLDLVIKYCQPDVVRSIFQKAIHNNKKPRKIKFLFKK 1417

Query: 1895 YLEYEKSVGEE 1905
             LEYEK +  +
Sbjct: 1418 QLEYEKLIWRQ 1428



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 122/546 (22%), Positives = 211/546 (38%), Gaps = 95/546 (17%)

Query: 187 FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 246
           + VG+ V   V++      E    K+ LSL  +++   LS+  +  GM +    ++  + 
Sbjct: 153 YKVGEYVITKVIE------EQKSNKVQLSLHPNVINDQLSVNQLVVGMQIPGIAQTWNEF 206

Query: 247 GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC 306
           G  ++FG   F+GF+    L        K G +    ++ +D+  K+     +   V   
Sbjct: 207 GTTINFGSQQFSGFINEKKL--------KCGRVYLFNIKEVDQKEKIAICDFEQRDVQ-- 256

Query: 307 VTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND 366
             ++ K IS  LL PG +        +  G ++  L  F     IF             D
Sbjct: 257 -LQNKKQISKHLLTPGNIWKCNTAKSITGGQIVK-LNKFGVLGYIFQ------------D 302

Query: 367 YN--QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLG 424
           Y   Q K +  RI+  D  SR + L+     + N       +VG  Y Q  V+      G
Sbjct: 303 YQVEQEKNILCRIIGFDEPSRQIYLSSKQEHIDNTTYIPPYEVGQQY-QGVVINQQLYSG 361

Query: 425 LLL-------DIPST---------------PVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
             L       D   T               P+       I   A++E+      + + +C
Sbjct: 362 AYLVNAILNDDQAQTKKSKKAVKAKQPNLGPICMLNKTQIP--ADQEIVD----HIQRTC 415

Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV----DSFGAIVQF 518
           +   I  F H+  ++  +             SD+  G +VKG V  V    DS+  ++  
Sbjct: 416 IIKEINYFDHVGFVSFEVNSKPKL-------SDLNVGAIVKGVVKQVLLKEDSYNVLLNI 468

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
                A+ P   MS++ +  P  KF+VG++L  R+L +  +   I VT K TL+ + + +
Sbjct: 469 NDNFHAILPSLQMSDYPLANP-PKFRVGSKLRVRILQIDEQHNNIIVTMKPTLL-TDIKV 526

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
             +  +       +G+  K  ++G  V+F+  + GF   S L LD G  P  +   GQ++
Sbjct: 527 FKTLDDVNVGDTLYGFTIKKLENGILVKFFQNIVGFL--SNLSLD-GQNPDDIKD-GQII 582

Query: 637 KCRIMSSIPASRRINLSFMM---KPTRVSEDDL------------VKLGSLVSGVVDVVT 681
           K  +     +  ++ LS      K  +V+E               + LG  V  VV  + 
Sbjct: 583 KVYVKYVNQSENKLLLSLKKIDPKQKQVNEGQTQNVVLTKHIKTKLNLGEKVQCVVSAIK 642

Query: 682 PNAVVV 687
            N V V
Sbjct: 643 NNVVYV 648


>gi|66807509|ref|XP_637477.1| hypothetical protein DDB_G0286941 [Dictyostelium discoideum AX4]
 gi|60465898|gb|EAL63968.1| hypothetical protein DDB_G0286941 [Dictyostelium discoideum AX4]
          Length = 804

 Score =  194 bits (494), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 151/571 (26%), Positives = 270/571 (47%), Gaps = 60/571 (10%)

Query: 119 LPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLAR---AADALDPILDNEI 175
           +P+ A ++  K++  GM +     +V E D+ I LP GL+G  +    +D+    +   +
Sbjct: 150 IPKSACRLLKKDLHTGMVVLATFEQVTEMDITISLPFGLKGYVKFNEISDSFTEWMKETL 209

Query: 176 EANEDNLLPT--------------IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
           +  ++N   T              +F+ GQ++ C ++ L D     G   +  +LR  L+
Sbjct: 210 KREDENEKSTNFRKMKIISDQVRKMFYKGQMLKCAIVGLTDHHTIEG---LHCTLRPELV 266

Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGID---V 274
             G S++T  E M +   ++SI+D GYI+ FG   + GFL  +N      + S  D   +
Sbjct: 267 NVGSSIDTFSEDMTIHGCIESIQDKGYIVSFGSKDYNGFLEFSNTCYYYPDQSSDDQNQL 326

Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
             G  ++ +++SID++ K   L+     VS+   K+ + I+++ +  GM+V T+V  +L 
Sbjct: 327 YIGQPIESLIQSIDKSTKTFKLTISHPLVSRSTIKNSETITMESIKAGMLVETKVLRVLS 386

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLT---- 390
           NG+ L FL +F G + I H QN   T      Y +++ V ARILFVD   + +GL+    
Sbjct: 387 NGLHLGFLDFFAGDIFILHSQNPIET------YKENQGVKARILFVDQVHKRIGLSTLGH 440

Query: 391 ---LNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST-----PVSTP----A 438
                PY      P  +V+ G +     + R++  L +++   ST     P+  P     
Sbjct: 441 VLGFKPYPFGTTKPGQYVESGKL----TIERIE-PLEMIVTTESTVVQSNPMKAPLLLRG 495

Query: 439 YVTISDVAE--EEVRKLEKKYKEGSCV--RVRILGFRHLEGLATGILKASAFEGLVFTHS 494
           Y+ I ++     ++ K   ++K+   +  R R+    HL+G+ T   +    E   ++++
Sbjct: 496 YIHIEELESGVNDLTKASNQFKKTEPLEKRCRVKHLDHLDGMVTYTARTRELEKKFYSYN 555

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D+  GMVV+G +  V +    V+    +  +    HM++  I  P + FKVGA +  R++
Sbjct: 556 DLSCGMVVQGVIRYVRADSLEVELATSIHGVVARHHMADTNITDPLEFFKVGATVKVRII 615

Query: 555 GVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V+   KR+ +T KK+L+ S+  I++         I+HG ITK  +   FV FYN   G 
Sbjct: 616 NVEPDKKRLQLTLKKSLIYSEYPIITDKNTTPIGTISHGIITKTTRFLVFVSFYNNSFGV 675

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
                L           + VG+ V  + + S
Sbjct: 676 VEAQNLSNSKIESVQKQFPVGRTVLAKTLFS 706



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 124/282 (43%), Gaps = 31/282 (10%)

Query: 1256 FIHEGDIVGGRIS--KILSGVGGLVVQIGPH-----LYGRVHFTELKNICVSDPLSGYDE 1308
            ++  G +   RI   +++      VVQ  P      L G +H  EL++  V+D     + 
Sbjct: 457  YVESGKLTIERIEPLEMIVTTESTVVQSNPMKAPLLLRGYIHIEELES-GVNDLTKASN- 514

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
             QF K + LE    V+   H        LDGM +  +     +     K      DLS  
Sbjct: 515  -QFKKTEPLEKRCRVKHLDH--------LDGMVTYTARTRELE-----KKFYSYNDLSCG 560

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
            M+VQG ++ V +    + L+  +   V   +++D  +  P + F +G  V  R+++VEP 
Sbjct: 561  MVVQGVIRYVRADSLEVELATSIHGVVARHHMADTNITDPLEFFKVGATVKVRIINVEPD 620

Query: 1429 SKRVEVTLKTSDSRTASQSE---INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
             KR+++TLK    ++   SE   I + +   +G I  G I +   + +F++  N N  G+
Sbjct: 621  KKRLQLTLK----KSLIYSEYPIITDKNTTPIGTISHGIITKTTRFLVFVSFYN-NSFGV 675

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
                 LS   +++++  +  G  V  K L  +  K +  L +
Sbjct: 676  VEAQNLSNSKIESVQKQFPVGRTVLAKTLFSESSKSQPGLPL 717



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 154/348 (44%), Gaps = 45/348 (12%)

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL-RPFQDGISDKTVDISNDNMQTF 1256
            Y P +  + Q + +IG+ +   + SI+K  K  +L +  P    +S  T+  S       
Sbjct: 314  YYPDQSSDDQNQLYIGQPIESLIQSIDKSTKTFKLTISHPL---VSRSTIKNSETITMES 370

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            I  G +V  ++ ++LS   GL +       G +     +N     P+  Y E Q VK ++
Sbjct: 371  IKAGMLVETKVLRVLS--NGLHLGFLDFFAGDIFILHSQN-----PIETYKENQGVKARI 423

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK----IEDLSPNMIVQ 1372
            L + +      H  + L S+L  +         T    PG+++E     IE + P  ++ 
Sbjct: 424  LFVDQV-----HKRIGL-STLGHVLGFKPYPFGT--TKPGQYVESGKLTIERIEPLEMI- 474

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV--AGRVLSVEPLSK 1430
                 VT++   +  S  + A +LL     GY+   E E  +  L   + +    EPL K
Sbjct: 475  -----VTTESTVVQ-SNPMKAPLLLR----GYIHIEELESGVNDLTKASNQFKKTEPLEK 524

Query: 1431 RVEVT-------LKTSDSRTAS-QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1482
            R  V        + T  +RT   + +  + ++L  G +V G I+ V +  L + +  T++
Sbjct: 525  RCRVKHLDHLDGMVTYTARTRELEKKFYSYNDLSCGMVVQGVIRYVRADSLEVELA-TSI 583

Query: 1483 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+     +++ ++ +    ++ G  VKV+I+ V+ +K+R+ L +K S
Sbjct: 584  HGVVARHHMADTNITDPLEFFKVGATVKVRIINVEPDKKRLQLTLKKS 631


>gi|403220620|dbj|BAM38753.1| pre-rRNA processing protein [Theileria orientalis strain Shintoku]
          Length = 371

 Score =  194 bits (494), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/296 (39%), Positives = 175/296 (59%), Gaps = 23/296 (7%)

Query: 1640 EREQEIRAAEERLLEKDAPRTPD---EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1696
            E E +IR  E+R+ + +    P    ++ERLV ++ +SS VWI YM+F L+  D+E AR 
Sbjct: 76   ENESKIREQEDRIADNEWMNNPSSVLDYERLVVTNSSSSVVWIAYMSFYLNSGDLEMARK 135

Query: 1697 IAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL 1756
               R L+ I+ RE  EKLN+WVAY N+E  YG    + V++VF +A+QY D K ++L ++
Sbjct: 136  TVNRGLKAIDFREMGEKLNLWVAYLNMECIYG----DKVMEVFNKAVQYNDSKTIYLKMI 191

Query: 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPR 1814
            G+     Q   A E+  K IKKF  S K+WL  ++   +  +  E  + + +  +  +P+
Sbjct: 192  GILVSNNQFDKAREICEKGIKKFYTSKKIWLAYLKLFYEHMKDFEAGRQLHKTCISRIPK 251

Query: 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL---- 1870
            HK +   S TA+LE+K+G    G+  FE IL + PKR D+W+ YL   I+L   D     
Sbjct: 252  HKRLFITSSTALLEYKHG----GKMYFENILLDNPKRMDIWNQYLTAHIKLQISDTVTPK 307

Query: 1871 ------IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
                  +R LFERAISL L PKKMK +F K+LE+E + G E+  + V+ KA++YVE
Sbjct: 308  SERLKNVRNLFERAISLDLKPKKMKIIFAKWLEFECTHGNEKSKQMVQNKALKYVE 363


>gi|397620972|gb|EJK66030.1| hypothetical protein THAOC_13070 [Thalassiosira oceanica]
          Length = 2366

 Score =  194 bits (493), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 172/289 (59%), Gaps = 24/289 (8%)

Query: 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN 1715
            ++P    +FERL+ SSPN S +WIKYMA+ LS+AD + AR++A RA   I  R+E EKLN
Sbjct: 2079 ESPENAADFERLLASSPNDSEIWIKYMAWHLSLADTDSARNVANRAFDRIEFRQEGEKLN 2138

Query: 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALL--------------GLYER 1761
            +W A   LE + G   ++++     RA Q  +PK+V+L +               G  + 
Sbjct: 2139 VWTALLTLELKCGT--DKSLNDAIDRASQQNNPKQVYLRVCEQLDKEVDAAASVGGSTDL 2196

Query: 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKF 1820
                K ADE+  K  KKFK    VW+  +Q LLK  + E   ++++R+L SLP++KHI+ 
Sbjct: 2197 DTATKRADEMFAKACKKFKSKKSVWIAHLQYLLKGSRHEEAHSLLKRSLQSLPQYKHIEV 2256

Query: 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880
            +S+ A +EF++G A+RGR++F+ +L + PKR DL  +Y+D+E++ GD+D  R LF   ++
Sbjct: 2257 MSKFAQIEFEHGSAERGRTIFDALLGKNPKRMDLLFVYIDKEVKCGDLDKARALFSSVVN 2316

Query: 1881 LSLPPKKMKF-------LFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922
             S   +K KF       LFKK+   E+  G+E+  E VK +A  +V ++
Sbjct: 2317 PSSSDRKFKFSDKQMKSLFKKWFRMEEEHGDEDSQERVKDEARAFVSNS 2365



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 11/108 (10%)

Query: 542  KFKVGAELVFRVL--GVKSKRITVTHKKTLVKS--KLAILSSYAEATDRLITHGWITKIE 597
            K++VG  +  R L   V+ +   +T KKTL+      +++S Y EA    I  G+I+K++
Sbjct: 981  KYRVGQGVDVRCLTVDVRGRTAVLTAKKTLIAEGEDGSVISDYGEAEPGKIAAGFISKVD 1040

Query: 598  KHGCFVRFYNGVQGFAPR----SELGLDPGCEPSSMYHVGQVVKCRIM 641
              G  V FYN V G        SELG++   +P + Y VG VV  R++
Sbjct: 1041 GTGLTVTFYNNVHGRVSSRCLASELGVE---DPRTNYTVGDVVAARVV 1085



 Score = 42.0 bits (97), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 17/129 (13%)

Query: 319 LVPGMMVSTRVQSILENGVMLSF-LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVN--- 374
           L PGM+    V++  +NG+ +SF    + G +D  HL         K    + ++     
Sbjct: 689 LQPGMLTEVSVEAYAKNGLCVSFHRGVYRGAIDEDHLGGHRGCEEGKGGRERRRRTRTRA 748

Query: 375 -----------ARILFVDPTSRAVGLTLNPYLLHNRAPPSH--VKVGDIYDQSKVVRVDR 421
                       RI+ VD  ++ V  ++ P++L  R   +   + VG I + ++V+R+D 
Sbjct: 749 CGGRACSADGIPRIVAVDTATKVVRFSIQPHILALRGEFAAFPLPVGTIVEGARVIRIDA 808

Query: 422 GLGLLLDIP 430
           G+G LL +P
Sbjct: 809 GIGALLALP 817


>gi|261326050|emb|CBH08876.1| rRNA biogenesis protein, putative [Trypanosoma brucei gambiense
            DAL972]
          Length = 679

 Score =  193 bits (491), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 181/307 (58%), Gaps = 12/307 (3%)

Query: 1627 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1686
            E  N +  K  K + E+ I A E R +E   P +P+EF+RL+ +SPN+S++W+++M   +
Sbjct: 324  ENTNVNRSKIRKRKLEETIDAYE-RSMETAVPSSPEEFQRLLLASPNNSYLWVQWMTHHV 382

Query: 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1746
            S+   E+AR +AE+AL TI +RE  E+LN+WVAY NLEN +G    E++  VF+RAL++ 
Sbjct: 383  SLQQFEEARLVAEKALTTIGVRETQERLNVWVAYMNLENLHGT--AESLASVFKRALRHA 440

Query: 1747 -DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAV 1804
             D   V+  L  ++  T +      L   M+ K +   +VW R    L+   +++ ++ V
Sbjct: 441  LDELVVYERLADIFSATRKFNQLLSLCRAMVSKNRKVPRVWERLGTVLIDHNKRDQLKRV 500

Query: 1805 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1864
            ++    +L R ++   +    + E++NG  + GR++FEG+L   PK++D+WS+YLDQE+ 
Sbjct: 501  LKDMSDALKRDEYALVVVHLGVHEYRNGSVENGRALFEGLLLRMPKKSDVWSVYLDQELG 560

Query: 1865 L-------GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917
            L            +RGLFERA+S S   K M+ +  +++ +E++ G    +E VK +A  
Sbjct: 561  LLARRSEVASAVFVRGLFERAVSTSFSAKVMQQVLTRFMSFERAHGTPADVEKVKARARS 620

Query: 1918 YVESTLA 1924
            YVE+ ++
Sbjct: 621  YVEAKIS 627


>gi|156086054|ref|XP_001610436.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154797689|gb|EDO06868.1| conserved hypothetical protein [Babesia bovis]
          Length = 383

 Score =  193 bits (490), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 177/299 (59%), Gaps = 19/299 (6%)

Query: 1641 REQEIRAAEERLLEKDAP---RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
            +E E+RAAE RLLE ++     T  +FE+ V +  NS+ +WI+YMAF L    +E AR +
Sbjct: 85   KETELRAAERRLLENESSGSVETVFDFEKRVATGGNSASLWIEYMAFHLRNGSLEGARQV 144

Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
              R L+ I+ R  +E+L +WVA  N+E  YG+  +E    VFQ +L++ DPK ++L ++ 
Sbjct: 145  VRRGLERIDFRAISERLTLWVANINMECLYGDRVKE----VFQESLRFNDPKTMYLKMIS 200

Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ--EGVQAVVQRALLSLPRH 1815
            ++ + ++   A E+  + IKK   S K W   ++ L +  +  E  + V  R LL +P H
Sbjct: 201  IFVKNDRLSDAIEVCERGIKKLGKSKKFWQAYLRLLFEHVKDFEEARKVYNRCLLRIPDH 260

Query: 1816 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI----------RL 1865
            K +  ++ TA+LEFK G A+RG+ MFE +L + P+R D+W  Y+   I          R 
Sbjct: 261  KKVYMMTSTALLEFKFGSAERGQMMFENLLLDNPRRMDIWMQYICAYIKFQLTSPGIKRS 320

Query: 1866 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
              +  IR LF R I+L L PKKMK +++K++E+E + G+ +    V+QKA+EYVES  A
Sbjct: 321  DGLRSIRNLFLRIITLDLKPKKMKVIYQKWMEFECNHGDSKSKSLVQQKALEYVESVEA 379


>gi|429860182|gb|ELA34927.1| rRNA biogenesis protein [Colletotrichum gloeosporioides Nara gc5]
          Length = 1773

 Score =  192 bits (489), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 230/880 (26%), Positives = 390/880 (44%), Gaps = 64/880 (7%)

Query: 2   AASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHS 61
           +A S K+ + S +D P  ++          ++   A +A  ++    D+ P+FPRGGG  
Sbjct: 18  SAKSTKASRPSKRDTPTKDRKQDGGKDKKSREEAPAPKAPTVSRLLKDEEPLFPRGGGSV 77

Query: 62  LTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFG-DGISGKLP 120
           LT  E+ +I  E  A+    +       K K KK +R+  +   D  +    D  + K+ 
Sbjct: 78  LTPLEQKQITMEAKADAAKEDAEFDVNEKSKAKKEKRRKAKEAKDTDAKHARDEDAVKI- 136

Query: 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEA 177
                +  K +  G  + G ++ ++   L I LP  L G   +A  +D ++  LD  +E 
Sbjct: 137 ---EGLNFKRLVKGSLVLGQISHIDPVQLTIALPNNLTGHVSIASISDTINAKLDGAMET 193

Query: 178 NEDNL----------LPTIFHVGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLS 226
           +++            L ++F +GQ V   VL   DD      KR+I LSLR      GLS
Sbjct: 194 SDNESEDEDEEDDVDLKSMFRIGQYVRAYVLSTSDDTAGGKAKRRIELSLRPVDTNTGLS 253

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAENSGID---VKPGLLLQG 282
            + V   + L A + S++DHGY ++ G+     GFL +  +    G+D   ++PG +   
Sbjct: 254 SDDVVANVTLMASIASVQDHGYEMNLGIDGDLKGFLSKKEVG--PGMDEASLRPGAVCLC 311

Query: 283 VVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFL 342
           VV+ +  T  VV LS+DP  +           +I+  +PG +    +  + + G+    L
Sbjct: 312 VVKGV--TGIVVQLSADPQKLGNTSNVASNAPTINSFLPGTLADVLLTEVTKRGLQGKLL 369

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLH--- 397
            +   T D+ H        +    Y    +V ARI+   P ++   +G++L P++ +   
Sbjct: 370 GHLPVTADLIHSGVGPDGVDLDAKYKVGGRVKARIICNFPAAKEPKLGISLLPHINNLQS 429

Query: 398 --------NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEE 449
                    +AP   + +    +   V +V+  +GL +D     +S   +V IS V + +
Sbjct: 430 KSSGKGSRAKAPLDLLPIAAFAETCTVRQVEPDIGLYVDTGVPGIS--GFVHISRVKDGK 487

Query: 450 VRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
           V  L +    +K G+  R R++G+  L+G+     + S  +       DV  G +V GK+
Sbjct: 488 VDALYESSGPFKVGTTHRGRVVGYSPLDGMFLLSFEKSVLDQAFIRLEDVPIGQIVSGKI 547

Query: 507 ----IAVDSF-GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR- 560
               I  +   G IV+    +       H ++ ++  P KKF+ G E+  RVL V+ ++ 
Sbjct: 548 EKMIIGENGVSGLIVKLAENIAGYVHESHFADVKLQHPEKKFREGMEVKARVLSVRLRKH 607

Query: 561 -ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
            + +T KK+LV S   I+ +Y +    + T G IT +   G  + F+  V+GF P S++ 
Sbjct: 608 QLRLTLKKSLVSSDSTIIKNYDDVEVDMQTPGTITSVSADGARLEFFGDVRGFLPVSQMS 667

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLGSLVS 674
                +P   +  GQVV   ++S +P  RR+ +S    P+    D       +K+G LVS
Sbjct: 668 EAYIKDPREHFRAGQVVSVHVLSVVPEERRLVVS-CKDPSAFGLDKQAALKALKIGDLVS 726

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFDQLLVLD-N 732
             V   T + V V +   G  K  I   HL D     T      I+ G     L+VLD N
Sbjct: 727 AKVSQKTEDEVFVDLEESGL-KAIIRVGHLTDKSASKTEAALKRIRVGQTLTDLMVLDKN 785

Query: 733 ESSN-LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
           E    ++L+ K S I +++  +L S    +   +V   YV  I     +V+F G LT   
Sbjct: 786 ERRRAVILTQKPSFIEASKNGKLLSSYDDVTVGAVAPAYVREIGPFAVYVQFGGNLTAIL 845

Query: 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
           P+SK     +   S      QSV   I+  N E  RI ++
Sbjct: 846 PKSKLDREVQEKASFGMRKHQSVEVKIVSSNPEQKRIIVA 885



 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/263 (38%), Positives = 161/263 (61%), Gaps = 10/263 (3%)

Query: 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE 1712
            L+   P+T  ++ERL+   P+SS +WI+YMA  + ++++ KAR IAERA++TINIRE+ E
Sbjct: 1482 LDAHGPQTATDYERLLLGQPDSSQLWIEYMALQMKVSELSKAREIAERAIKTINIREQTE 1541

Query: 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELL 1772
            KLN+W+AY NLE  YG   + +  +VF+RA QY D ++VH  L  +Y ++ + K AD++ 
Sbjct: 1542 KLNVWIAYLNLEVAYGT--KTSTDEVFKRACQYNDEQEVHERLASIYIQSGKLKQADDVF 1599

Query: 1773 YKMIKKFK-HSCKVWLRRVQRL--LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829
              ++ KFK  S  VW+     L     + +  +A++ RA  +L +    + +++ A LEF
Sbjct: 1600 QSLVNKFKSKSPDVWVNYAHFLHVTMNEPDRARALLPRATQALEQRHTAQLMARFAALEF 1659

Query: 1830 K--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD--LIRGLFERAI-SLSLP 1884
            K  NG A+RGR+ FE IL+ +PKR D W   +D E+   + D   IR +FER   +  L 
Sbjct: 1660 KSPNGDAERGRTTFETILATWPKRFDFWGQLIDLELSAAEPDATAIRDVFERGTKAKGLK 1719

Query: 1885 PKKMKFLFKKYLEYEKSVGEEER 1907
             KK +  FK++ ++E+ +  + R
Sbjct: 1720 AKKAEKWFKRWADWEEKLDPKGR 1742



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 6/165 (3%)

Query: 499  GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
            G +V+G V  V   G  VQ  G + AL  + ++S+  I      F+V   +  RV+ + +
Sbjct: 1205 GDIVRGFVKNVADNGVFVQLGGSISALVKIANLSDRYIKDWKGSFQVDQLVKGRVISIDT 1264

Query: 559  --KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN--GVQGFAP 614
               +I ++ K ++V++      ++ +  +  I  G + K+E+ G F+   N   V G   
Sbjct: 1265 AINKIELSLKASVVENDYTPPITWKDIKESQIVTGKVRKVEEFGAFIVVDNSTNVSGLCH 1324

Query: 615  RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
            RSE+   P  +   +Y+ G VVK +++S     RRI  +F +KP+
Sbjct: 1325 RSEMAEKPVEDARKLYNEGDVVKAKVISIDDEKRRI--TFSLKPS 1367



 Score = 43.9 bits (102), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 114/277 (41%), Gaps = 44/277 (15%)

Query: 137  LWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCI 196
            L G V +VN++ L+I L   + G     D  D       + +E N L   F+ G+++   
Sbjct: 1114 LPGRVTKVNDRQLMIKLSDAVSGPVHLVDLCD-------DYDEANTLK--FNKGEIIRVS 1164

Query: 197  VLQLDDDKKEIGKRKIWLSLRLSLLYKGLS---------LETVQEGMVLTAYVKSIEDHG 247
            V+++D   K     ++ LS R S +    S         L  +  G ++  +VK++ D+G
Sbjct: 1165 VVEVDKSNK-----RLRLSTRPSRILSSTSPVADREITSLAQLTSGDIVRGFVKNVADNG 1219

Query: 248  YILHFGLPSFTGFLPRNNLAENSGIDVKPGL----LLQGVVRSIDRTRKVVYLSSDPDTV 303
              +  G  S +  +   NL++    D K       L++G V SID     + LS     V
Sbjct: 1220 VFVQLG-GSISALVKIANLSDRYIKDWKGSFQVDQLVKGRVISIDTAINKIELSLKASVV 1278

Query: 304  SKCVT-----KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
                T     KD+K   I        V+ +V+ + E G  +  +   T    + H     
Sbjct: 1279 ENDYTPPITWKDIKESQI--------VTGKVRKVEEFGAFI-VVDNSTNVSGLCHRSEMA 1329

Query: 359  --PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
              P  + +  YN+   V A+++ +D   R +  +L P
Sbjct: 1330 EKPVEDARKLYNEGDVVKAKVISIDDEKRRITFSLKP 1366



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 114/268 (42%), Gaps = 16/268 (5%)

Query: 314  ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKV 373
            I  D L    ++  RV  + +  +M+      +G V +  L + +   N    +N+ + +
Sbjct: 1103 IKWDSLKKNQILPGRVTKVNDRQLMIKLSDAVSGPVHLVDLCDDYDEANTLK-FNKGEII 1161

Query: 374  NARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
               ++ VD +++ + L+  P  + +   P  V   +I   +++   D   G + ++    
Sbjct: 1162 RVSVVEVDKSNKRLRLSTRPSRILSSTSP--VADREITSLAQLTSGDIVRGFVKNVADNG 1219

Query: 434  V------STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFE 487
            V      S  A V I+++++  ++  +  ++    V+ R++            LKAS  E
Sbjct: 1220 VFVQLGGSISALVKIANLSDRYIKDWKGSFQVDQLVKGRVISIDTAINKIELSLKASVVE 1279

Query: 488  G---LVFTHSDVKPGMVVKGKVIAVDSFGA--IVQFPGGVKALCPLPHMSEFEIVKPGKK 542
                   T  D+K   +V GKV  V+ FGA  +V     V  LC    M+E  +    K 
Sbjct: 1280 NDYTPPITWKDIKESQIVTGKVRKVEEFGAFIVVDNSTNVSGLCHRSEMAEKPVEDARKL 1339

Query: 543  FKVGAELVFRVLGV--KSKRITVTHKKT 568
            +  G  +  +V+ +  + +RIT + K +
Sbjct: 1340 YNEGDVVKAKVISIDDEKRRITFSLKPS 1367


>gi|71403744|ref|XP_804641.1| rRNA biogenesis protein [Trypanosoma cruzi strain CL Brener]
 gi|70867719|gb|EAN82790.1| rRNA biogenesis protein, putative [Trypanosoma cruzi]
          Length = 672

 Score =  192 bits (487), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 189/330 (57%), Gaps = 19/330 (5%)

Query: 1603 DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPD 1662
            + + D ++ I  N G TD       KN    +K  K + E+ I A E R +    P +PD
Sbjct: 313  ETESDENDSIDDNDGTTD-------KNGGGEQKLRKRKIEEAIDAYE-RSMGTAVPSSPD 364

Query: 1663 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1722
            EF RL+ ++PN+S++W+++MA  +++   E+ R +AE+AL TI +RE  E+LN+WVAY N
Sbjct: 365  EFRRLLMAAPNNSYLWVQWMAHHVALQQQEETRLVAEKALSTIGVRETQERLNVWVAYMN 424

Query: 1723 LENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1781
            LEN +G    E++  VF+RALQ   D   V+  L  ++  T +      L   M+ KF++
Sbjct: 425  LENIHGT--VESLSAVFKRALQRAPDQLVVYERLADIFSATRKPNQLLALCRTMVSKFRN 482

Query: 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
              + W R  + L+ Q +++ ++ +V+    +L R  +   + + A+ E+K+G  + GR++
Sbjct: 483  EQRTWERLGKVLIDQKKRDQLRRMVKDMGGALRRDAYSLTVVRLAVHEYKSGSVENGRAL 542

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRL-------GDVDLIRGLFERAISLSLPPKKMKFLFK 1893
            FEG++   PK++D+WS YLDQE+ L         V L+R L ERA++ +   K M+    
Sbjct: 543  FEGLVVRMPKKSDVWSAYLDQEMALLVRRDESAAVPLVRALLERAVATNFSAKVMQQFLT 602

Query: 1894 KYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
            +++ +E++ G    +E VK +A  YVE+ +
Sbjct: 603  RFMSFERAYGSPADVEKVKTRARSYVEAKI 632


>gi|391333551|ref|XP_003741176.1| PREDICTED: uncharacterized protein LOC100897193 [Metaseiulus
            occidentalis]
          Length = 976

 Score =  191 bits (486), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 173/282 (61%), Gaps = 10/282 (3%)

Query: 1645 IRAAEERLLE----KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAER 1700
            IR AE +L       + P+T +EF+RLV + P+   +W+KYMA  L   +V+KAR +A+R
Sbjct: 695  IRDAELKLTSPAGATNMPKTTEEFDRLVMADPSDGSLWVKYMAHHLQQLEVDKARQVAKR 754

Query: 1701 ALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE 1760
             L+ ++   E +KL++W+A  NLEN YG   +E++  VF+ AL+  DP KV+  +  +Y 
Sbjct: 755  GLKFVS-GNEADKLSLWLASLNLENMYGT--QESLDTVFKEALKQNDPIKVYSHMAKIYG 811

Query: 1761 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQ--QEGVQAVVQRALLSLPRHKHI 1818
             T +N+L  E+   M+KKFK   +VW+     L      QE  Q +++R+  SL   +H+
Sbjct: 812  MTGKNELCREIYQIMLKKFKQHREVWIDFGSWLFDSGSLQEARQ-LMKRSFNSLTEKEHV 870

Query: 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1878
            + I + + LEF  G  D G+S+ + +L  YP+R DLW++Y+DQ ++L D D +R  F + 
Sbjct: 871  EVILKFSQLEFAKGERDFGKSLMDNLLLSYPRRLDLWNVYIDQLVKLNDFDAVRINFNKL 930

Query: 1879 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            +S  LP +KMK  FKK+L++E   G  E +E VKQK ++Y++
Sbjct: 931  LSAKLPVRKMKSAFKKWLDFETKHGTPESLEEVKQKVVDYID 972


>gi|302891949|ref|XP_003044856.1| hypothetical protein NECHADRAFT_43434 [Nectria haematococca mpVI
           77-13-4]
 gi|256725781|gb|EEU39143.1| hypothetical protein NECHADRAFT_43434 [Nectria haematococca mpVI
           77-13-4]
          Length = 1773

 Score =  191 bits (485), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 214/837 (25%), Positives = 369/837 (44%), Gaps = 61/837 (7%)

Query: 7   KSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRE 66
           KS K + +  P   +  K+  K+  K+I++A     +     ++ P+FPRGGG+ LT  E
Sbjct: 17  KSAKNTKEARPSKKEGGKDA-KSKSKKIDEAPAKGPVVSLLKEEEPMFPRGGGNVLTPLE 75

Query: 67  RDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKI 126
           + +I  E  A+    E    + N   K + ++K    +             +       +
Sbjct: 76  QKQIQLEAKADALRDE----EFNTGGKAQKKKKRKTALKTDKKTEKKKEEEEDTVKVESL 131

Query: 127 TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPILDNEIEANEDNL- 182
           + K +  G  + G V ++N  D+ + LP  L G   +   ++ L   L+ +    +D   
Sbjct: 132 SFKRLVKGSLVLGQVTKINNLDIEVALPNNLTGHVSIVAISEQLTERLEKDAAEKDDEED 191

Query: 183 --------LPTIFHVGQLVSC-IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEG 233
                   L TIF +GQ V   +V  +D+     GKR+I LSLR S    GL  + V   
Sbjct: 192 DKDEDGIDLETIFSIGQYVRAYVVSTVDESGTGKGKRRIELSLRPSEANTGLEGDDVVIN 251

Query: 234 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID---VKPGLLLQGVVRSIDRT 290
             + A + S++D G+++  G+ +   FL R+ +  +S  D   ++PG +    V S    
Sbjct: 252 TTVAASIVSVQDRGFVMDTGISNLGAFLSRSEI--DSSFDEQRLQPGAVFLCQVVSKGAN 309

Query: 291 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 350
            K+  LS     +           +I+  +PG +    V +    G     + +   T D
Sbjct: 310 GKIAQLSLQQKKLGNPKNVPADATTINTFLPGTIADVLVSNTDRRGFAGKIMGHLDVTAD 369

Query: 351 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--AVGLTLNPYLLH----------- 397
           + H        +  + Y    +V ARI+   P ++   +G++L P++             
Sbjct: 370 LIHSGVGPAGVSLDSTYKIGSRVKARIICNFPAAKEPKLGISLLPHITSLEQKRPTKTTD 429

Query: 398 -NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKK 456
             + P + + +  + ++  V  V+  +GL +DI    +S   +V IS V + +V  L + 
Sbjct: 430 AKKLPTTVLPISSLVEKCTVRHVEGEIGLFVDIGIPGLS--GFVHISRVKDGKVEALYES 487

Query: 457 ---YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV--IAVDS 511
              YK GS  + R++G+  ++GL     + S  E       DV  G V+ G+V  + VD 
Sbjct: 488 SGPYKVGSEHKGRVVGYNQVDGLFQISFEKSVLEQQYLRLEDVPIGAVITGEVERVLVDE 547

Query: 512 FGA---IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHK 566
            G    I++   G+  L P  H+S+ ++  P KKF+ G ++  RVL       ++ +T K
Sbjct: 548 KGVSGLILKIAEGITGLVPEQHLSDIKLQNPEKKFRPGMKIKARVLSTNLVKNQMRLTLK 607

Query: 567 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
           KTLV S+  I+ SY +A+  +   G I KI+  G  ++F+  V+GF P SE+      +P
Sbjct: 608 KTLVNSEAPIIKSYEDASVGMQVPGTIVKIQSSGAQIQFFGPVRGFLPISEMSEAYIKDP 667

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL-----VKLGSLVSGVVDVVT 681
              + VGQVV   ++   P S+++ +S    P+    D       +++G LVSG V   T
Sbjct: 668 HEHFRVGQVVSVHVLDVEPESQKLIVS-CKDPSAFGLDKQNALKKLQVGVLVSGKVSQKT 726

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLD-NESSN-LL 738
            + + V  +     K  +P   L D            I  G     L+VL+ NE    L+
Sbjct: 727 EDQIFVE-LDDAQLKAILPVGQLTDKSASKNQYAWKRISAGQTISNLMVLEKNEKRRVLI 785

Query: 739 LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
           L+ K SLI +++   L           VV G+V NI  T  FV+F G +    P+S+
Sbjct: 786 LTQKPSLIKASEDRTLLKTFEDAKEGKVVAGFVQNITLTAVFVQFAGGVRALLPKSR 842



 Score =  189 bits (480), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/265 (39%), Positives = 164/265 (61%), Gaps = 13/265 (4%)

Query: 1646 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1705
            R AE   L+ + P+T  ++ERL+   P+SS +WI YMAF + ++++ KAR +AERA+++I
Sbjct: 1477 RTAE---LDANGPQTSSDYERLLLGQPDSSELWIAYMAFQMQVSELSKAREVAERAIKSI 1533

Query: 1706 NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQN 1765
            NIREE EKLN+WVAY NLE  YG+  +  V +VF+RA QY + ++V+  L  +Y ++E+ 
Sbjct: 1534 NIREETEKLNVWVAYLNLEVAYGS--KSTVEEVFKRACQYNNEQEVYERLASIYIQSEKL 1591

Query: 1766 KLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFIS 1822
            K ADEL   M+KKF   +  VWL     L   + +  +A  ++ RA   L        +S
Sbjct: 1592 KDADELFEAMVKKFGAKAPNVWLNYAHFLHVTRNDAARARSLLPRATQQLDSRHSQNLVS 1651

Query: 1823 QTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD--LIRGLFERA 1878
            + A LEF+  NG  +RGR+MFEG+L+ +PK+ DLW   LD E  L + D   +R +FER 
Sbjct: 1652 RFAALEFRSPNGEPERGRTMFEGLLAAWPKKGDLWGQLLDLESGLAEADPTAVRDVFERR 1711

Query: 1879 ISL-SLPPKKMKFLFKKYLEYEKSV 1902
              +  L P++ +  F+++  +E+ +
Sbjct: 1712 TRVKGLKPQQAEKWFRRWATWEEKL 1736



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 143/298 (47%), Gaps = 26/298 (8%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            G ++ G + ++L    GV GL+++I   + G V    L +I + +P   +  G  +K +V
Sbjct: 533  GAVITGEVERVLVDEKGVSGLILKIAEGITGLVPEQHLSDIKLQNPEKKFRPGMKIKARV 592

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L  +  V+    + L+L+ +L              V++    ++  ED S  M V G + 
Sbjct: 593  LS-TNLVKN--QMRLTLKKTL--------------VNSEAPIIKSYEDASVGMQVPGTIV 635

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             + S G  I     +   + +S +S+ Y++ P + F +G++V+  VL VEP S+++ V+ 
Sbjct: 636  KIQSSGAQIQFFGPVRGFLPISEMSEAYIKDPHEHFRVGQVVSVHVLDVEPESQKLIVSC 695

Query: 1437 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496
            K  D       + N L  L VG +V G++ +     +F+ +++  L  +  V +L++   
Sbjct: 696  K--DPSAFGLDKQNALKKLQVGVLVSGKVSQKTEDQIFVELDDAQLKAILPVGQLTDKSA 753

Query: 1497 DNIETIYR---AGEKV-KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
               +  ++   AG+ +  + +L+ ++++R + L  K S  K   D   + + E++ E 
Sbjct: 754  SKNQYAWKRISAGQTISNLMVLEKNEKRRVLILTQKPSLIKASEDRTLLKTFEDAKEG 811



 Score = 47.8 bits (112), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 90/444 (20%), Positives = 194/444 (43%), Gaps = 51/444 (11%)

Query: 1063 VGSLVQAEITEIKPLE-----LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 1117
            +G+++  E+  +   E     L LK   G  G +    ++D K   ++N    F+ G  +
Sbjct: 532  IGAVITGEVERVLVDEKGVSGLILKIAEGITGLVPEQHLSDIK---LQNPEKKFRPGMKI 588

Query: 1118 TARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNE 1177
             AR+++     ++ K+ +  L++K +++  SE  + ++    D S+G +V G + K+ + 
Sbjct: 589  KARVLST----NLVKNQM-RLTLKKTLVN-SE--APIIKSYEDASVGMQVPGTIVKIQSS 640

Query: 1178 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE-KKLLRLVLRP 1236
             A +     ++   F+  S    + +++    F +G+ V+ HVL +  E +KL+     P
Sbjct: 641  GAQIQFFGPVRG--FLPISEMSEAYIKDPHEHFRVGQVVSVHVLDVEPESQKLIVSCKDP 698

Query: 1237 FQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKN 1296
               G+  +       N    +  G +V G++S+          +    ++  +   +LK 
Sbjct: 699  SAFGLDKQ-------NALKKLQVGVLVSGKVSQ----------KTEDQIFVELDDAQLKA 741

Query: 1297 ICVSDPLS--GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
            I     L+     + Q+   K +   +T+     +E + +  +  ++   S   +++  T
Sbjct: 742  ILPVGQLTDKSASKNQYA-WKRISAGQTISNLMVLEKNEKRRVLILTQKPSLIKASEDRT 800

Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1414
                L+  ED     +V G+V+N+T    F+  +  + A +  S L     E P  +F +
Sbjct: 801  ---LLKTFEDAKEGKVVAGFVQNITLTAVFVQFAGGVRALLPKSRLPADVQEQP--DFGM 855

Query: 1415 GKL--VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS-----NLHVGDIVIGQIKR 1467
             KL  +  R++SV P  +R+ V    SD     + E  +++     NL  G ++  +I  
Sbjct: 856  HKLQSIEVRIVSVIPDHRRIVVAPADSDEDDVVKKEKTDVASAPSDNLEFGTVIKAKITS 915

Query: 1468 VESYGLFITIENTNLVGLCHVSEL 1491
            V+   L + +   ++ G   VS++
Sbjct: 916  VKDTQLNVQLAGNDVQGRIDVSQV 939


>gi|340052139|emb|CCC46410.1| putative rRNA biogenesis protein [Trypanosoma vivax Y486]
          Length = 671

 Score =  190 bits (483), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 186/308 (60%), Gaps = 11/308 (3%)

Query: 1626 DEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM 1685
            + K +     K ++ + +E   A ER ++   P + +EF RL+ +SPN+S++W+++M++ 
Sbjct: 332  NAKGSSQIGNKVRKRKLEEAIDAYERSMDTAVPSSEEEFRRLLLASPNNSYLWVQWMSYH 391

Query: 1686 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1745
            +S+   E+AR +AE+ALQTI +RE +E+LN+WVAY NLEN +G    E++  VF+R +++
Sbjct: 392  VSLQQYEEARLVAEKALQTIGLRETDERLNVWVAYMNLENMHGTA--ESLSSVFKRTVEH 449

Query: 1746 C-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQA 1803
              D   V+  L  +++ T ++     L   M+ KF+ + + W R    L+ Q +++ ++ 
Sbjct: 450  SLDKLVVYERLADIFKATHKSNQLLALCRTMVSKFRDAQRTWERLGVVLVDQNKRDQLKR 509

Query: 1804 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863
            +++    +L R ++   +   A+ E++NG  + GR++ EG++   PK++D+WS+YLDQE+
Sbjct: 510  MMKDMGGALKRDEYALTVVHVAVYEYRNGSVENGRALLEGLIMRMPKKSDVWSVYLDQEL 569

Query: 1864 -------RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916
                       V L+R LFERA++ +   K M+ L  +++ +EK+ G    +E V+ +A 
Sbjct: 570  GLLARRAAEAAVPLVRSLFERAVATNFSAKVMQKLLTRFMAFEKAYGTPADVERVRARAR 629

Query: 1917 EYVESTLA 1924
             YVE+ ++
Sbjct: 630  SYVEAKIS 637


>gi|396476776|ref|XP_003840117.1| similar to rRNA biogenesis protein RRP5 [Leptosphaeria maculans
           JN3]
 gi|312216688|emb|CBX96638.1| similar to rRNA biogenesis protein RRP5 [Leptosphaeria maculans
           JN3]
          Length = 1787

 Score =  190 bits (482), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 234/908 (25%), Positives = 386/908 (42%), Gaps = 91/908 (10%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPP--------DDDVP 52
           M A  RK+++ S+   P   +   +  +++K+  +DA      A P          D+  
Sbjct: 1   MGAVKRKAEQPSA---PAKKEKGASGDRSAKRPKSDATSEHSAAKPKAEAPKSVFKDEEK 57

Query: 53  VFPRGGGHSLTQRERDEIH--AEVDAEFEAV-------------ERGLHKKNKKKKKKTE 97
           VFPRGG   LT  E  +I   A  D  FE               + G    N+  K+  +
Sbjct: 58  VFPRGGASVLTPLEHKQIQIRANQDVLFEQAGIKRTSGGDDDFSDMGSEDDNEAAKQSAK 117

Query: 98  RKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGL 157
           +K  +          DG      R A  ++ K ++ G  + G+V EV ++D+V+ LP  L
Sbjct: 118 KKTFKKSKKSQE---DGDKEPTIR-AEGLSYKRLTPGTMVLGLVTEVTQQDIVLALPNNL 173

Query: 158 RG---LARAADALDPIL--------DNEIEANEDNL----LPTIFHVGQLVSCIVLQLDD 202
            G   L   +D L+  L        D E  +++ N     L  +F VGQ +   +   ++
Sbjct: 174 VGYVPLTAISDKLNERLEQLMKDDTDKEDGSDDGNFEDVDLQDMFSVGQYLRACITSTNE 233

Query: 203 DKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL--PSFTGF 260
           +     KR + LS+   L+ KGL+   +    ++ A V S EDHG ++  GL      GF
Sbjct: 234 ETARARKR-LELSIDPKLVNKGLTKRKLPVNSMMQASVVSNEDHGLVMDLGLGDTKVKGF 292

Query: 261 LPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKD--LKGISID 317
           LP+  L        V+ G +   +    +   ++V LS+D          +  +   +ID
Sbjct: 293 LPKGELGPKVQHAKVQEGAVFMCLATGTNPDGRIVKLSADHAKAGNLAKGNTLIDAPTID 352

Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
           + +PG  V   +     + +    L     T D +H   T    +    Y    KV  RI
Sbjct: 353 VFLPGTAVDVLITDSTSSTITGKILGLIDCTADAYHSGATERGADVSQKYKLGSKVKGRI 412

Query: 378 LFVDPTS--RAVGLTLNPYLL----------HNRAPPSHV-KVGDIYDQSKVVRVDRGLG 424
           LF  P S  R VG++L  +++            R PP  +  V  I + +KVV+V   LG
Sbjct: 413 LFTCPDSEPRKVGVSLLDHVVSLSTRMSGKPKERKPPLELLPVSTIIENAKVVKVAPALG 472

Query: 425 LLLDIPSTPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLATGIL 481
              D+    V    +  IS +A+E+V  L +    +K GS  + RI+G+  ++GL    L
Sbjct: 473 AFFDLGVRDVV--GFSHISRLADEKVEFLSEDSGAFKLGSTHKARIIGYNDMDGLFQLSL 530

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKV--IAVDSFGA---IVQFPGGVKALCPLPHMSEFEI 536
           +    +       D+K G VVKGKV  +  D  GA   +V    G+  L    H+++  +
Sbjct: 531 EQKILDQPFLRIEDIKAGQVVKGKVHKLIADKKGATAVLVHLADGITGLVSELHLADVRL 590

Query: 537 VKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
             P +KF+ G  +  RVL  +  R  I +T KKTLV S +   + Y    +     G I 
Sbjct: 591 QHPERKFREGVPVKARVLYTEPARHQIHLTLKKTLVNSDINPWTDYNMIKEGAAGPGIIA 650

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            + ++G  VRFY  V+ + P +E+      + +  +  GQVV  R +S  P  R++ +S 
Sbjct: 651 NVRRNGATVRFYGTVKAWLPVAEMSEAFIEDATKHFSAGQVVNVRAISVNPEERQLLVS- 709

Query: 655 MMKPTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
              P  +  +     + +  G++V G V   T  AV +  +  G  KG +   HL D  E
Sbjct: 710 CKDPAAIDTNKEAAFNALNPGAIVKGTVLEKTDEAVTLD-LGNGV-KGLLRIGHLTDGSE 767

Query: 710 HATV--MKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQ--QLPSDASHIHPNS 763
              +  MK  I+ G   + L+VL    +S  + +S K +L   AQ  +L      +    
Sbjct: 768 KKDISTMKK-IRVGGVLEDLVVLAKHVKSKTVTVSNKPTLRKDAQASKLAISVEDLQAGE 826

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            VHG+V  I+    F+     ++G   +S+  +   +  +      QSV   +  V+   
Sbjct: 827 TVHGFVRGILPDKVFIELGNGISGPVFKSQLTEEMLSAPNFGLRKDQSVTVRVSHVDPAK 886

Query: 824 GRITLSLK 831
           G   LS+K
Sbjct: 887 GFFWLSMK 894



 Score =  184 bits (467), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 169/283 (59%), Gaps = 13/283 (4%)

Query: 1649 EERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1706
            E+R  + DA  P++  ++ERL+   PNS+ +W++YM F   + ++EKAR IA RAL TIN
Sbjct: 1499 EDRTGDLDAFGPQSIADYERLLLGQPNSAELWVRYMVFQRELGEIEKARQIARRALATIN 1558

Query: 1707 IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1766
             REE EKL++W A  +LEN++    ++A+ ++F+ A Q+ D ++VH  ++ +Y  + + +
Sbjct: 1559 PREEKEKLDVWTALLHLENDFAT--DDAMEQIFKEACQHNDSREVHERMIKIYISSGKLE 1616

Query: 1767 LADELLYKMIKK--FKHSCKVWLRRVQRLLK----QQQEGVQAVVQRALLSLPRHKHIKF 1820
             AD L   M+K   F    + WL     L+           +A++QRA  S+P  +H   
Sbjct: 1617 KADSLYQLMVKNKSFTPDPQFWLSYAAFLMDVLSPPSPTRARALLQRATQSVPSREHRYL 1676

Query: 1821 ISQTAILEFK--NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1878
              + A LEFK  NG A+RGR++FEG++S YPK+ D+W +YL  E+  G  + +R LFER 
Sbjct: 1677 TQKFAALEFKSPNGDAERGRTIFEGLVSTYPKKGDVWDMYLSLEMSHGSSENVRNLFER- 1735

Query: 1879 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            ++ +   K+ + +F K+  +E  VG ++ +E VK    ++ E+
Sbjct: 1736 MAKTTKKKRAQTVFAKWAVWEAGVGNKKGVERVKALEEQWREA 1778



 Score = 70.9 bits (172), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 156/374 (41%), Gaps = 47/374 (12%)

Query: 314 ISIDLLVPGMMVSTRVQSILEN-----GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYN 368
           + I+ +  G +V  +V  ++ +      V++      TG V   HL +     + +  + 
Sbjct: 540 LRIEDIKAGQVVKGKVHKLIADKKGATAVLVHLADGITGLVSELHLADVR-LQHPERKFR 598

Query: 369 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 428
           +   V AR+L+ +P    + LTL   L+++   P         D + +     G G++ +
Sbjct: 599 EGVPVKARVLYTEPARHQIHLTLKKTLVNSDINP-------WTDYNMIKEGAAGPGIIAN 651

Query: 429 IPSTPVST------PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHL----- 473
           +     +        A++ +++++E  +    K +  G  V VR +      R L     
Sbjct: 652 VRRNGATVRFYGTVKAWLPVAEMSEAFIEDATKHFSAGQVVNVRAISVNPEERQLLVSCK 711

Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM-- 531
           +  A    K +AF  L        PG +VKG V+        +    GVK L  + H+  
Sbjct: 712 DPAAIDTNKEAAFNAL-------NPGAIVKGTVLEKTDEAVTLDLGNGVKGLLRIGHLTD 764

Query: 532 -SEFEIVKPGKKFKVGA---ELVFRVLGVKSKRITVTHKKTLVK----SKLAILSSYAEA 583
            SE + +   KK +VG    +LV     VKSK +TV++K TL K    SKLAI     +A
Sbjct: 765 GSEKKDISTMKKIRVGGVLEDLVVLAKHVKSKTVTVSNKPTLRKDAQASKLAISVEDLQA 824

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            + +  HG++  I     F+   NG+ G   +S+L  +    P+      Q V  R+   
Sbjct: 825 GETV--HGFVRGILPDKVFIELGNGISGPVFKSQLTEEMLSAPNFGLRKDQSVTVRVSHV 882

Query: 644 IPASRRINLSFMMK 657
            PA     LS  ++
Sbjct: 883 DPAKGFFWLSMKLE 896



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 111/501 (22%), Positives = 210/501 (41%), Gaps = 62/501 (12%)

Query: 1069 AEITEIKP-----LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            A++ ++ P      +L ++  +GF    HI+ + D+K   +      FK+G T  ARII 
Sbjct: 462  AKVVKVAPALGAFFDLGVRDVVGFS---HISRLADEKVEFLSEDSGAFKLGSTHKARIIG 518

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK-VDNEWALLT 1182
             +   DM    L++LS++  +L       +      D+  GQ V G V+K + ++     
Sbjct: 519  YN---DMDG--LFQLSLEQKIL------DQPFLRIEDIKAGQVVKGKVHKLIADKKGATA 567

Query: 1183 ISRHLKAQLFILDSAYEPSE--LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
            +  HL   +  L S    ++  LQ  +R+F  G  V   VL     +  + L L+     
Sbjct: 568  VLVHLADGITGLVSELHLADVRLQHPERKFREGVPVKARVLYTEPARHQIHLTLK----- 622

Query: 1241 ISDKTVDISNDNMQT---FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
               KT+  S+ N  T    I EG    G I+ +     G  V+    +   +   E+   
Sbjct: 623  ---KTLVNSDINPWTDYNMIKEGAAGPGIIANVRR--NGATVRFYGTVKAWLPVAEMSEA 677

Query: 1298 CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1357
             + D    +  GQ V  + + ++   R               +S  + + + T+ +    
Sbjct: 678  FIEDATKHFSAGQVVNVRAISVNPEERQLL------------VSCKDPAAIDTNKEA--- 722

Query: 1358 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE---SPEKEFPI 1414
                   L+P  IV+G V   T +   + L   +   + + +L+DG  +   S  K+  +
Sbjct: 723  ---AFNALNPGAIVKGTVLEKTDEAVTLDLGNGVKGLLRIGHLTDGSEKKDISTMKKIRV 779

Query: 1415 GKLVAGR-VLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESYG 1472
            G ++    VL+    SK V V+ K +  + A  S++  ++ +L  G+ V G ++ +    
Sbjct: 780  GGVLEDLVVLAKHVKSKTVTVSNKPTLRKDAQASKLAISVEDLQAGETVHGFVRGILPDK 839

Query: 1473 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532
            +FI + N  + G    S+L+E+ +       R  + V V++  VD  K    L MK    
Sbjct: 840  VFIELGN-GISGPVFKSQLTEEMLSAPNFGLRKDQSVTVRVSHVDPAKGFFWLSMK---L 895

Query: 1533 KNDADNLQMSSEEESDEAIEE 1553
            + +AD +   + + + + +EE
Sbjct: 896  EANADEVAPKTTDNAGQPLEE 916



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 133/317 (41%), Gaps = 24/317 (7%)

Query: 448  EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
            E++  +E+ +  GS ++V +       G    +  AS   G   T  D+K G V+  +V 
Sbjct: 1075 EQLSSVEENFPVGSALKVTVKTVDVAAG-RLDLTAASTVTGKALTLQDLKVGYVLPARVT 1133

Query: 508  AVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVK--SKRITVT 564
             +     +VQ    + A   L  ++ +++  KP  +FKVG  L   ++ +   +K+++++
Sbjct: 1134 KLHDASIVVQINETIAAPIFLEQLADDYDKAKPS-EFKVGDILRVCIIDIDLPNKKLSLS 1192

Query: 565  HKKTLVKSKLAILSSYAEATDRL------ITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
             + + V S    +    E  DR       +  G+I  +  +G +VR    V+ +   S L
Sbjct: 1193 ARPSRVLSSTLPIKD-PEIKDRAQLKVNDVVRGFIKHVADNGVYVRLGPHVEAYVRVSHL 1251

Query: 619  GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSEDDLVKLG 670
                  +  S +HV Q+V  +++S+ P  R   LS           +P   S    +K G
Sbjct: 1252 SDAYIKDWKSAFHVDQLVTGKVISNKPDQRNPQLSLKTSIIQADYSEPIEFSN---LKAG 1308

Query: 671  SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLV 729
             +V+  V  V    V + V       G      LAD       +K + K G     ++L 
Sbjct: 1309 QIVTATVRHVEDFGVFLVVANSNNVSGLCHVSQLADTPVDKEKVKEMYKKGDAVKAKVLK 1368

Query: 730  LDNESSNLLLSAKYSLI 746
            +D+ +  +  + KYS +
Sbjct: 1369 VDSNTRKISFTLKYSQV 1385



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 30/233 (12%)

Query: 624 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK----PTRVSEDDLVKLGSLVSG---- 675
            E S  + +G   K RI+          LS   K    P    ED  +K G +V G    
Sbjct: 500 SEDSGAFKLGSTHKARIIGYNDMDGLFQLSLEQKILDQPFLRIED--IKAGQVVKGKVHK 557

Query: 676 -VVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQ------- 726
            + D     AV+V+ +A G + G +   HLAD  L+H         P  +F +       
Sbjct: 558 LIADKKGATAVLVH-LADGIT-GLVSELHLADVRLQH---------PERKFREGVPVKAR 606

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L  +     + L+ K +L+NS     +D + I   +   G + N+   G  VRF G + 
Sbjct: 607 VLYTEPARHQIHLTLKKTLVNSDINPWTDYNMIKEGAAGPGIIANVRRNGATVRFYGTVK 666

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            + P ++  +    D +K +  GQ V    + VN E  ++ +S K      T+
Sbjct: 667 AWLPVAEMSEAFIEDATKHFSAGQVVNVRAISVNPEERQLLVSCKDPAAIDTN 719



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 88/228 (38%), Gaps = 40/228 (17%)

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLP------SDASHIHPNSVVHGYVCNIIETGCFVR 780
            ++ +D  +  L LSA+ S + S+  LP       D + +  N VV G++ ++ + G +VR
Sbjct: 1179 IIDIDLPNKKLSLSARPSRVLSST-LPIKDPEIKDRAQLKVNDVVRGFIKHVADNGVYVR 1237

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
                +  +   S   D    D    ++V Q V   ++    +     LSLK         
Sbjct: 1238 LGPHVEAYVRVSHLSDAYIKDWKSAFHVDQLVTGKVISNKPDQRNPQLSLK--------T 1289

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            S +Q  +   E I          S LK       G ++   V    DFGV +     ++V
Sbjct: 1290 SIIQADY--SEPIEF--------SNLK------AGQIVTATVRHVEDFGVFLVVANSNNV 1333

Query: 901  YGFITHHQLAGATVE---------SGSVIQAAILDVAKAERLVDLSLK 939
             G     QLA   V+          G  ++A +L V    R +  +LK
Sbjct: 1334 SGLCHVSQLADTPVDKEKVKEMYKKGDAVKAKVLKVDSNTRKISFTLK 1381


>gi|21355217|ref|NP_651245.1| CG5728 [Drosophila melanogaster]
 gi|16769580|gb|AAL29009.1| LD41803p [Drosophila melanogaster]
 gi|23172158|gb|AAF56280.2| CG5728 [Drosophila melanogaster]
          Length = 1430

 Score =  189 bits (481), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 187/321 (58%), Gaps = 12/321 (3%)

Query: 1603 DEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAP-RTP 1661
            DE  +++  +++ Q +  + K +  K    A+ KE    EQ +R  EER  +  A   T 
Sbjct: 1114 DEDEELN--VAETQKNAAKKKRLSAKEKAKAEIKE----EQRLREIEERNADPKARLETI 1167

Query: 1662 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1721
            D++ERLV + PN+S  W+KY+AF+LS  ++EKAR++A RA+ TI+ RE  E  N+W A  
Sbjct: 1168 DQYERLVIAQPNNSISWLKYIAFLLSNTEIEKARALARRAISTISFRETQELRNMWSALL 1227

Query: 1722 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1781
            N+E  Y N  ++    V + AL   DP +++++++ + ++ ++      +L  ++ KFK 
Sbjct: 1228 NMELVYSNNFDD----VLKEALNCNDPLEIYISVVDILKKNKRKDRLSSVLTTVLNKFKT 1283

Query: 1782 SCKVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
              +VW    +      + + V  ++QRAL +LP  +HI  I   A L  K+   D  +++
Sbjct: 1284 ELRVWPVAAEAYFWLGKSDQVHNLLQRALRALPNQEHIPCIVSFAKLYAKHDNNDMAQTL 1343

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900
             + +++ YPKR D+WS+Y+D  I+ G +D  R + ERA+   L P KM+ ++KKYL+ E+
Sbjct: 1344 LDDVVTSYPKRIDIWSVYVDMLIKAGLIDSARNVLERAVVQKLKPNKMQVIYKKYLQLEE 1403

Query: 1901 SVGEEERIEYVKQKAMEYVES 1921
            + G +  +  VKQ+A ++V++
Sbjct: 1404 NHGTDATVAKVKQQAEQWVKN 1424



 Score =  110 bits (276), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 161/684 (23%), Positives = 293/684 (42%), Gaps = 62/684 (9%)

Query: 116 SGKLPRY-ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADALDPIL 171
           +G+L  + A  + +  +   M + GVV E+    L I LPG +     +A  +DA   + 
Sbjct: 55  NGQLEAFSAETLNMDTLQEDMLVMGVVKELTATALQIALPGRMFARTLVADISDAYTRVA 114

Query: 172 DNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 229
              +  + +E + L  +F +G++V    ++   +K + G+  + LSL+ + ++  L  ++
Sbjct: 115 KAAMSGDTSEYHDLTELFQLGRIVYGKAIK--TEKLDTGRVSLLLSLKPADVHGNLHHKS 172

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 289
           +++G + +  V    +HGY++  G+     F+P    A+   +     L ++ V     +
Sbjct: 173 IKKGFIFSGAVAEALEHGYVIESGVQGLQAFVPCEKPAQKLHVGQLAFLKVKTVHHDTHQ 232

Query: 290 -TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTG 347
            T   V +  D     +   K     ++D ++PG +V  +V   L++G+  S +   F+ 
Sbjct: 233 STCTCVQVEQD-----QLRIKSQNETNLDYILPGSIVKFKVAKHLKDGLKGSIMNESFSA 287

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH--- 404
            V+  HL N   T    + Y  ++  NAR+L+V P ++ V LTLN  +    A       
Sbjct: 288 YVNEHHLANALDTL---DAYELNEDYNARVLYVMPLTKLVYLTLNLDIKTGAAVAKDQDE 344

Query: 405 -------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--K 455
                  +KVG + +++KV+R+  G G++L +        +Y +I    +    K E   
Sbjct: 345 EEQEVEPIKVGSVVEKAKVLRLGSG-GVVLLLNKKLKGIISYGSIRGNFKGNYDKDEVLS 403

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG--KVIAVDSFG 513
           KY   +  +VRILG+  +E L       +     +F   D+  G +V            G
Sbjct: 404 KYGRKTKHKVRILGYDVIESLYYCSDDPNVVNEKLFCLEDINAGDLVTAKIFKKDDKIKG 463

Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVK 571
             V+  G V  +     + +F +  P  ++ VG  L  RVL V ++R    V+++   + 
Sbjct: 464 WSVRI-GKVNGI-----LEQFYLA-PNVRYDVGQSLKCRVLEVNAERKICYVSNRAEYLG 516

Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
             + IL+ YA A    +  G + + E     V+F NG++G   R  L      E SS + 
Sbjct: 517 KGIKILTDYASAHVGNVYMGTVVRCEDTYVLVKFGNGIKGVLHRQNLK-----ENSSFFE 571

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVI 690
            GQ  K RI++      +I L+      ++ E   V++ + +   ++V +T  A      
Sbjct: 572 -GQTTKFRILTR--NKDQITLTLPEDKFQLGEICPVEITNALDAGLEVKITFAAEDDEED 628

Query: 691 AKGYSK-----GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL 745
             G  K     G IP   L+DHLE       V   G   D   ++ N  S  L    Y  
Sbjct: 629 EDGNPKLEEFVGLIPLRLLSDHLELLHAQMRVHPAGSYTDAACIMQNIFS--LRDVPY-- 684

Query: 746 INSAQQLPSDASHIHPNSVVHGYV 769
              + QL  D   +    ++  YV
Sbjct: 685 --FSGQLTKDWQSVQVGDIIRSYV 706


>gi|115504093|ref|XP_001218839.1| rRNA biogenesis protein [Trypanosoma brucei brucei strain 927/4
            GUTat10.1]
 gi|83642321|emb|CAJ16096.1| rRNA biogenesis protein, putative [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 679

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 180/307 (58%), Gaps = 12/307 (3%)

Query: 1627 EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML 1686
            E  N +  K  K + E+ I A E R +E   P + +EF+RL+ +SPN+S++W+++M   +
Sbjct: 324  ENTNVNRSKIRKRKLEETIDAYE-RSMETAVPSSSEEFQRLLLASPNNSYLWVQWMTHHV 382

Query: 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1746
            S+   E+AR +AE+AL TI +RE  E+LN+WVAY NLEN +G    E++  VF+RAL++ 
Sbjct: 383  SLQQFEEARLVAEKALTTIGVRETQERLNVWVAYMNLENLHGT--AESLASVFKRALRHA 440

Query: 1747 -DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAV 1804
             D   V+  L  ++  T +      L   M+ K +   +VW R    L+   +++ ++ V
Sbjct: 441  LDELVVYERLADIFSATRKFNQLLSLCRAMVSKNRKVPRVWERLGTVLIDHNKRDQLKRV 500

Query: 1805 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1864
            ++    +L R ++   +    + E++NG  + GR++FEG+L   PK++D+WS+YLDQE+ 
Sbjct: 501  LKDMSDALKRDEYALVVVHLGVHEYRNGSVENGRALFEGLLLRMPKKSDVWSVYLDQELG 560

Query: 1865 L-------GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917
            L            +RGLFERA+S S   K M+ +  +++ +E++ G    +E VK +A  
Sbjct: 561  LLARRSEVASAVFVRGLFERAVSTSFSAKVMQQVLTRFMSFERAHGTPADVEKVKARARS 620

Query: 1918 YVESTLA 1924
            YVE+ ++
Sbjct: 621  YVEAKIS 627


>gi|195504842|ref|XP_002099252.1| GE10809 [Drosophila yakuba]
 gi|194185353|gb|EDW98964.1| GE10809 [Drosophila yakuba]
          Length = 1478

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/319 (34%), Positives = 183/319 (57%), Gaps = 12/319 (3%)

Query: 1607 DMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEE--REQEIRAAEERLLEKDAP-RTPDE 1663
            D D  +++ +   + AK    K    AK+K K E   EQ +R  EER  +  A   T D+
Sbjct: 1162 DDDEELNEAETQKNAAK----KKRLSAKEKAKAEVKEEQRLREIEERNADPKARLETIDQ 1217

Query: 1664 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1723
            +ERLV + PN+S  W+KY+AF+LS  ++EKAR +A RA+ TI+ RE  E  N+W A  N+
Sbjct: 1218 YERLVIAQPNNSISWLKYIAFLLSNTEIEKARDLARRAISTISFRETQELRNMWSALLNM 1277

Query: 1724 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1783
            E  Y N  ++    V + AL   DP +++++++ + +R ++      +L  ++ KFK   
Sbjct: 1278 ELVYSNNFDD----VLKEALNCNDPLEIYISVVDILKRNKKKDRLSTVLTTILNKFKTEL 1333

Query: 1784 KVWLRRVQRLLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE 1842
            +VW    +      + + V  ++QRAL  LP  +HI  I   A L  K+   D  +++ +
Sbjct: 1334 RVWPVAAEAYFWLGKSDQVHNLLQRALRGLPNQEHIPCIVSFAKLYAKHDNNDMAQTLLD 1393

Query: 1843 GILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV 1902
             +++ YPKR D+WS+Y+D  I+ G +D  R + ERA+   L P KM+ ++KKYL+ E++ 
Sbjct: 1394 DVVTSYPKRIDIWSVYVDMLIKAGLIDSARNVLERAVLQKLKPNKMQVIYKKYLQLEENH 1453

Query: 1903 GEEERIEYVKQKAMEYVES 1921
            G +  +  VKQ+A ++V++
Sbjct: 1454 GTDATVAKVKQQAEQWVKN 1472



 Score =  106 bits (265), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 146/623 (23%), Positives = 270/623 (43%), Gaps = 54/623 (8%)

Query: 116 SGKLPRY-ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPIL 171
           +G+L  + A  + +  +   M + GVV E     L I LPG +      AD   A   + 
Sbjct: 55  NGQLEAFSAETLNMDTLQEDMLVMGVVKETTATALQISLPGRMFARTLVADISEAYTRVA 114

Query: 172 DNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 229
              +  + +E + L  +F  G++V    ++   +K   G+  + LSL+ + ++  L  ++
Sbjct: 115 KAAMGGDTSEYHDLSELFQAGRIVYGKAIK--TEKLGTGRISLLLSLKPADVHGNLHHKS 172

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 289
           +++G + +  V  I++HGY++  G+     F+P     E     +  G L    V+S+  
Sbjct: 173 IKKGFIFSGAVAEIQEHGYVIESGVQGLQAFVP----CEEPAQKLHVGQLAFLKVKSVHH 228

Query: 290 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGT 348
                  S       +   K     ++D ++PG +V  +V   L++G+  S +   F+  
Sbjct: 229 DTHQSTCSCVQVEQDQLRIKSQNETNLDYILPGSIVKFKVAKHLKDGLKGSIMNESFSAY 288

Query: 349 VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH---- 404
           ++  HL N   T    + Y  ++  NAR+L+V P ++ V LTLN  +    A        
Sbjct: 289 INEHHLTNALDTL---DAYELNEDYNARVLYVMPLTKLVYLTLNLDIKSGVAAEKDQDEE 345

Query: 405 ------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KK 456
                 +KVG + +++KV+R+  G G++L +        +Y +I    +    K E   K
Sbjct: 346 EQEEEPLKVGSVVEKAKVLRLGSG-GVVLLLNKKLKGIISYGSIRANFKGNYDKDEVLSK 404

Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG--KVIAVDSFGA 514
           Y   +  +VRILG+  +E L       +     ++   D+  G +V            G 
Sbjct: 405 YGRKTKHKVRILGYDIIESLYYCSDDPNVVSEKLYCLEDINAGDLVTAKIFKKDDKIKGW 464

Query: 515 IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKS 572
            V+  G V  +     + +F +  P  ++ VG  L  RVL V ++R    V+++   +  
Sbjct: 465 SVRI-GKVNGI-----LEQFYLA-PNVRYDVGQSLKCRVLEVNAERKICYVSNRSEYLGK 517

Query: 573 KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV 632
            + +L+ YA A    +  G + + E +   V+F NG++G   R  L      E +S +  
Sbjct: 518 GIKLLTDYASAHVGNVYVGTVVRCEDNYVLVKFGNGIKGVLHRQNLK-----ENNSFFE- 571

Query: 633 GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVIA 691
           GQ  K RI++      +I L+      ++ E   V++ + +   ++V +T  A       
Sbjct: 572 GQTTKFRILTR--NKDQITLTLPEDKFQLGEICPVEITNALDAGLEVKITYAADDDEEDE 629

Query: 692 KGYSK-----GTIPTEHLADHLE 709
            G  K     G IP   L+DHLE
Sbjct: 630 DGNPKLEEFMGLIPLRLLSDHLE 652


>gi|341879709|gb|EGT35644.1| CBN-LET-716 protein [Caenorhabditis brenneri]
          Length = 1755

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/274 (37%), Positives = 169/274 (61%), Gaps = 11/274 (4%)

Query: 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1711
            LLEK    + +E  R+VRS PNS+  WI+YM+  +  +D+  AR  AE  L+ I+  E  
Sbjct: 1476 LLEK----SEEEHSRMVRSDPNSAINWIQYMSLFVEKSDLAAARKTAEEGLKAIDQTESE 1531

Query: 1712 EKLNIWVAYFNLENEYGNPPEEAVVK-VFQRALQYCDPKKVHLALLGLYERTEQNKLADE 1770
            E + +W AY N+E  YG   E A V+ VF+RA Q  +   +H  L  +Y+  ++++ A  
Sbjct: 1532 ELIKLWTAYLNMEVAYG---ESATVQEVFKRACQNVNSYTIHKTLAKIYQNAQKHQEATR 1588

Query: 1771 LLYKMIKKFK-HSCKVWLRRVQRLLKQQ-QEGVQAVVQRALLSLPRH-KHIKFISQTAIL 1827
            +L +M+KKF+ +  +VW    + L+ Q+ Q+  + ++ RAL S P+  +HI+ IS+ A L
Sbjct: 1589 ILEEMVKKFRANKLEVWTLLAEHLMTQKDQKAARDLLPRALKSAPKAAQHIQLISKFAQL 1648

Query: 1828 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887
            EFK+G A+RGR++ EG+++ +PK+ DLW +Y D  ++   V+  R + ERA +L L   K
Sbjct: 1649 EFKHGDAERGRTLLEGLVTAHPKKMDLWLVYADAALKYLGVEHARKILERACNLDLTTHK 1708

Query: 1888 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            M+ L+KK+LE E   G+   ++ VK +A ++++S
Sbjct: 1709 MRPLYKKWLEMESKHGDAASVQLVKMRAEKFLQS 1742



 Score = 68.9 bits (167), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 112/518 (21%), Positives = 207/518 (39%), Gaps = 54/518 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG         E   + D++  A ++GL +K+   ++   +K  E           
Sbjct: 13  FPRGGG--------SEKPKKADSDVPAGKQGLKRKSAAPEQNEAKKVKEETS-------- 56

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDN 173
                   +  K+       G+   GVVAEV +  +++   G       A++        
Sbjct: 57  --------WIPKVEENCFIEGLTGLGVVAEVFDDGVLLHTAGTHTVKVHASEVSKKF--T 106

Query: 174 EIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEG 233
           E+   E   +   F +GQ+V   V+   +DK   GK K   S   + L K LS   +  G
Sbjct: 107 ELFNEEKIEMKDAFQLGQMVPFRVISKKNDK---GKAKA--SCNPARLNKHLSPNMLAAG 161

Query: 234 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKV 293
           +V+   V S+E+ G IL  GL   TGF+ +   A+     +K G+ L  +VR +  T +V
Sbjct: 162 LVIHTSVVSLEEKGAILDVGLDQITGFIEK---AQFPAGGLKEGIPL--IVRILSSTSRV 216

Query: 294 VYLSS--DPDTVSKCVTKDLKGISIDLLVPGMMVSTR-VQSILENGVMLSFLTYFTGTVD 350
           V ++S  + D ++    + L+   ++ L+PG ++        +  GV++       G + 
Sbjct: 217 VKVTSFVEQDNLNMASCEKLQ---LNHLMPGTILECEPTGDAVTAGVIVGIGNGLKGILP 273

Query: 351 IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHV 405
               +   P    +N     K + A ++F    S+ + L  +P +     +  R     +
Sbjct: 274 ----RRNLPPRLRENPEKLGKAIRAVVMFCQQNSKILVLNAHPDIVAVSRIEKRTTFEGI 329

Query: 406 KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVR 464
            +GD    + +  +     +   +P           IS     E    +  KY+ G+   
Sbjct: 330 SIGDKVTCTVIDTIPTKSIVYFTLPPIDGKKSLVTAISSRGLLENPDAVASKYEIGAEKL 389

Query: 465 VRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
            R+ G+R+ +   T   +       + T+ D K G ++  +V  +   G        VKA
Sbjct: 390 CRVTGYRYADRTITVSTRKDILNQKITTYKDAKCGDILDARVHHIAKSGVYFMVCNFVKA 449

Query: 525 LCPLPHMSEFEIVKPGKK--FKVGAELVFRVLGVKSKR 560
             P+  +S+  +     K  F++G E+  RV  +  +R
Sbjct: 450 FAPMSLLSDKPLTSQKIKSLFRMGTEVKCRVWQICEQR 487


>gi|268572137|ref|XP_002641244.1| Hypothetical protein CBG09112 [Caenorhabditis briggsae]
          Length = 1717

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/266 (37%), Positives = 163/266 (61%), Gaps = 5/266 (1%)

Query: 1659 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV 1718
            ++ +E  RLVRS PNS+  WI+YM+  +  +D++ AR  AE AL  IN  E  E L +W 
Sbjct: 1444 KSEEEHSRLVRSDPNSAINWIEYMSLFVEKSDLKAARKTAEEALSAINPTESEELLKMWT 1503

Query: 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1778
            AY N+E  YG+     V +VF+RA +  +   ++  L  +Y++  ++  A  +L +M+ K
Sbjct: 1504 AYLNMEVAYGD--STTVDEVFKRACKNANSYTIYRTLAKIYQKFNKHAEAKHILEQMVSK 1561

Query: 1779 FK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVAD 1835
            F+ +  +VW    + L+ Q +Q+G + ++ RAL S P+  +HI+ IS+ A LEFK G A+
Sbjct: 1562 FRANKLEVWTLLAEHLMNQKEQKGARDLLPRALKSAPKAQQHIQLISKFAQLEFKLGDAE 1621

Query: 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            RGR++ EG+++ +PK+TDLW +Y D  ++   ++  R + ERA +  L   KM+ L+KK+
Sbjct: 1622 RGRTLLEGLVTAHPKKTDLWLVYADAALKHLGIEHARKILERACNRELSVHKMRPLYKKW 1681

Query: 1896 LEYEKSVGEEERIEYVKQKAMEYVES 1921
            LE E   G+   I+ VK KA  +++S
Sbjct: 1682 LEMESKHGDAASIQLVKSKAESFLQS 1707



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 122/541 (22%), Positives = 219/541 (40%), Gaps = 74/541 (13%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG    +  ++    +      AV     ++N  KK K E      VDD    F D
Sbjct: 13  FPRGGGSDRPKPTKEGFPTKGLKRKSAVP----EQNDAKKAKEESSWIPKVDD----FID 64

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGG----LRGLARAADALDP 169
           G++G                     GVVAE+ +  +++   G     +     +A+  D 
Sbjct: 65  GLTG--------------------LGVVAELFDDGVLLHTAGTHTVKIHAAEVSANFTDL 104

Query: 170 ILDNEIEANEDNLLPTIFHVGQLVSCIVL--QLDDDKKEIGKRKIWLSLRLSLLYKGLSL 227
             +N+IE      +   F +GQ+V   V+  +  +DK   G+ K   S   + L K LS 
Sbjct: 105 FNENKIE------IKDAFQIGQMVPFRVISKKSGNDK---GRSKA--SCNPARLNKHLSP 153

Query: 228 ETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSI 287
             +  G+V+   V S+E+ G IL  GL   TGF+ ++         ++ G  L  VVR +
Sbjct: 154 NMLVAGLVIHTAVTSLEEKGAILDVGLDQMTGFIEKSQF---PAAGLREGQPL--VVRVL 208

Query: 288 DRTRKVVYLSS----DPDTVSKCVTKDLKGISIDLLVPGMMVSTR-VQSILENGVMLSFL 342
             T +VV ++S    D   +S C     + + ++ L+PG ++        +  GV+++  
Sbjct: 209 STTSRVVKVTSFVEQDNLNMSSC-----EKLQLNHLMPGTILECEPTGDAVTAGVIVNIG 263

Query: 343 TYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LH 397
               G +     +   P    +N     K + A ++F    S+ + L  +P +     + 
Sbjct: 264 NGLKGILP----RRNLPPRLRENPEKLGKAIRAVVMFCQQNSKVLVLNAHPDIVAVSRVE 319

Query: 398 NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKK 456
            R     +++GD    + V  +     +   +P T         +S     E+   +  +
Sbjct: 320 KRTSFEGIQIGDKVQCTVVDVIPTKSIVYFTLPPTDGKKSLVTAVSSRGLLEKPDSVATE 379

Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
           Y+ G+    R+ GFR+ +   T   +       +  + D K G V+  +V  V   G   
Sbjct: 380 YEVGTEKFCRVTGFRYADRAITVSTRKDILNQKITKYQDAKCGDVLDARVHHVAKNGVYF 439

Query: 517 QFPGGVKALCPLPHMSE--FEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKS 572
                V+A  P+  +S+    + K   KF+VG E   RV  +  + K + VT ++ ++  
Sbjct: 440 SVCNFVQAFAPMSLLSDKSLNLQKLKAKFQVGTETKCRVWQICDQRKNLIVTCREQIIAL 499

Query: 573 K 573
           K
Sbjct: 500 K 500


>gi|124808061|ref|XP_001348215.1| U3 small nucleolar ribonucleoprotein, U3 snoRNP, putative [Plasmodium
            falciparum 3D7]
 gi|23497105|gb|AAN36654.1| U3 small nucleolar ribonucleoprotein, U3 snoRNP, putative [Plasmodium
            falciparum 3D7]
          Length = 468

 Score =  187 bits (476), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 104/278 (37%), Positives = 164/278 (58%), Gaps = 20/278 (7%)

Query: 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1719
            TP ++ERL+ S  N S +WI Y+AF L   ++E+AR +AERAL+TI+I E +EKLNI++ 
Sbjct: 190  TPFDYERLIASEKNKSAIWISYIAFYLEQNNLEEARKVAERALKTIDIHEIDEKLNIYLC 249

Query: 1720 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1779
            Y N+E  YG+   +    +F+RAL   + K ++L  + + ++ ++     +L  + IKKF
Sbjct: 250  YINMECLYGDKLND----IFKRALLCNNEKSIYLHTIHILKKNKKLTQLKDLCEEAIKKF 305

Query: 1780 KHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837
            K+S K+W   +Q L    + +E    ++ ++L SLP+ KH+  I   A  E+K    +RG
Sbjct: 306  KYSKKIWSCYLQILHNTFKDEEYAHNILLKSLHSLPKKKHLNMIINAARFEYKYSNKERG 365

Query: 1838 RSMFEGILSEYPKRTDLWSIYLDQEI--------------RLGDVDLIRGLFERAISLSL 1883
            ++ FE ++ EYPKR+DLW  YLD  I               L ++  IR +FER +S   
Sbjct: 366  KTYFEKLIQEYPKRSDLWFTYLDIHINSLTKNENKEKIKLNLKELQFIRNIFERFLSYKF 425

Query: 1884 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
             P+ MK +F K+L +EKS G     + V++KA +YVES
Sbjct: 426  KPRVMKIIFTKWLLFEKSQGNMHSQKTVQEKAYKYVES 463


>gi|194909767|ref|XP_001982005.1| GG12355 [Drosophila erecta]
 gi|190656643|gb|EDV53875.1| GG12355 [Drosophila erecta]
          Length = 1433

 Score =  187 bits (474), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 176/303 (58%), Gaps = 8/303 (2%)

Query: 1623 KTIDEKNNRHAKKKEKEE--REQEIRAAEERLLEKDAP-RTPDEFERLVRSSPNSSFVWI 1679
            K   +K    AK+K K E   EQ +R  EER  +  A   T D++ERLV + PN+S  W+
Sbjct: 1129 KNAAKKKRLSAKEKAKAEVKEEQRLREIEERNADPKARLETIDQYERLVIAQPNNSISWL 1188

Query: 1680 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1739
            KY+AF+LS  ++EKAR +A RA+ TI+ RE  E  N+W A  N+E  Y +  ++    V 
Sbjct: 1189 KYIAFLLSNTEIEKARDLARRAISTISFRETQELRNMWSALLNMELVYSDNFDD----VL 1244

Query: 1740 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-QQQ 1798
            + AL   DP +++++++ + +R ++      +L  ++ KFK   +VW    +      + 
Sbjct: 1245 KEALNCNDPLEIYISVVDILKRNKKKDRLSSVLTTILNKFKTELRVWPVAAEAYFWLGKS 1304

Query: 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1858
            + V  ++QRAL  LP  +HI  I   A L  K+   D  +++ + +++ YPKR D+WS+Y
Sbjct: 1305 DQVHNLLQRALRGLPNQEHIPCIVSFAKLYAKHDNNDMAQTLLDDVVTSYPKRIDIWSVY 1364

Query: 1859 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
            +D  I+ G +D  R + ERA+   L P KM+ ++KKYL+ E++ G +  +  VKQ+A ++
Sbjct: 1365 VDMLIKAGLIDSARNVLERAVLQKLKPNKMQVIYKKYLQLEENHGTDATVAKVKQQAEQW 1424

Query: 1919 VES 1921
            V++
Sbjct: 1425 VKN 1427



 Score =  108 bits (270), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 142/622 (22%), Positives = 271/622 (43%), Gaps = 52/622 (8%)

Query: 116 SGKLPRY-ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD---ALDPIL 171
           +G+L  + A  + +  +   M + GVV E     L I LPG +      AD   A   + 
Sbjct: 55  NGQLEAFSAETLNMDTLQEDMLVMGVVKEATATALQIALPGRMFARTMVADISEAYTRVA 114

Query: 172 DNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLET 229
              +  + +E + L  +F VG++V    ++   +    G+  + LSL+ + ++  L  ++
Sbjct: 115 KAAMSGDTSEYHDLTELFQVGRIVYGKAIK--TEMLGTGRVSLLLSLKPADVHGSLHHKS 172

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR 289
           +++G + +  V  I++HGY++  G+     F+P    A+   +     L ++ V     +
Sbjct: 173 IKKGFIFSGAVAEIQEHGYVIESGVQGLQAFVPCEEPAQKLHVGQLAFLKVKNVHHDTHQ 232

Query: 290 -TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTG 347
            T   V +  D     +   K     ++D ++PG +V  +V   L++G+  S +   F+ 
Sbjct: 233 STCTCVQVEQD-----QLRIKSQNETNLDYILPGSIVKFKVAKHLKDGLKGSIMNESFSA 287

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH--- 404
            ++  HL N   T    + Y  ++  NAR+L+V P ++ V LTLN  +    A       
Sbjct: 288 YINEHHLTNALDTL---DAYELNEDYNARVLYVMPLTKLVYLTLNLDMKTGVAAEKDQNE 344

Query: 405 -------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--K 455
                  +KVG + +++KV+R+  G G++L +        +Y +I    +    K E   
Sbjct: 345 EEQEEEPLKVGTVVEKAKVLRLGSG-GVVLLLNKKLKGIISYGSIRANFKGNYDKDEVLS 403

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
           KY   +  +VRILG+  +E L       +     ++   D+  G +V  K+   D     
Sbjct: 404 KYGRKTKHKVRILGYDIIESLYYCSDDPNVVSEKLYCLEDITAGDLVTAKIFKRDD---- 459

Query: 516 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSK 573
            +  G    +  +  + E   + P  ++ VG  L  RVL V ++R    V+++   +   
Sbjct: 460 -KIKGWSVKIGKVNGILEQFYLAPNVRYDVGQSLKCRVLEVNAERKICYVSNRSEYLGKG 518

Query: 574 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
           +  L+  A A    +  G + + E +   V+F NG++G   R  L      + S+ +  G
Sbjct: 519 IKFLTDIASAHVGNVYMGTVVRCEDNYVLVKFGNGIKGVLHRQNL------KESNSFFEG 572

Query: 634 QVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVIAK 692
           Q  K RI++      +I L+      ++ E   V++ + +   ++V +T  A        
Sbjct: 573 QTAKFRILTR--NKDQITLTLPEDKFQLGEICPVEITNALDAGLEVKITYAADDDEEDED 630

Query: 693 GYSK-----GTIPTEHLADHLE 709
           G  K     G IP   L+DH+E
Sbjct: 631 GNPKLEEFMGLIPLRLLSDHME 652


>gi|406693939|gb|EKC97279.1| rRNA processing-related protein [Trichosporon asahii var. asahii
           CBS 8904]
          Length = 1499

 Score =  187 bits (474), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 212/846 (25%), Positives = 370/846 (43%), Gaps = 89/846 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAE----VDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGS 109
           FPRGGG SLT  E  +  AE     DAE     +      ++ +K  + KA    D    
Sbjct: 41  FPRGGGTSLTALEVKQTRAEGARQADAEMGKTLKKKKLSTRQMQKAKKEKATAESD---- 96

Query: 110 LFGDGISGKLPRYANKITLKNIS-----AGMKLWGVVAEVNEKDLVICLPGGLRG---LA 161
                 + K  R  + I ++ +S      G  +   V  V    LV+ +P  L G   + 
Sbjct: 97  ------AAKAERDKDTIRVEELSYKRLVPGTLVLARVHTVLPLHLVVSMPNNLLGHIPIT 150

Query: 162 RAADALDPILDNEIEANEDNL------------LPTIFHVGQLVSCIVLQLDDDKKE--I 207
             ++ L   L+ +I+A  ++             L  IF  GQ +   V+       +  I
Sbjct: 151 EVSNTLTAALNADIDAMSEDEDEEDEEKEGAPELTDIFRPGQYIPTRVINTFPTASQAFI 210

Query: 208 GKRKIWLSLRLSLLYK----------GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSF 257
            +  +  + RL+   +           ++ + V++G  +   V   ED GY +  GL + 
Sbjct: 211 AQYPVSETTRLAARVELTAVPEKINLDVAKQDVEKGYRIVGEVLGAEDKGYRVGLGLSAD 270

Query: 258 TG------FLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDL 311
           TG      F+P   + +N+G  + PG L+  VV  +    +VV L+ DP T+      ++
Sbjct: 271 TGLAGVEGFIPIEEVEKNAGGALIPGQLIPTVVSEVKAGGRVVKLTLDPQTLIHSSLTEV 330

Query: 312 KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHK 371
             I    L+PG + S  V +++ +G+ +    ++ GT+DI HL       + ++ YN  K
Sbjct: 331 SNIGS--LLPGQLASCLVTAVVPSGLNVKICGFYDGTIDIAHL--GLGEDDIEDRYNIGK 386

Query: 372 KVNARILF--VDPTSRAVGLTLNPYLLHNRAPPSH---------VKVGDIYDQSKVVRVD 420
           K+ ARIL+  V  + R   L+  P++ +  +P +          + VG      KV+RV 
Sbjct: 387 KIKARILYDTVASSERRFALSALPHIFNLASPVAADGETPLEIAIPVGKTLPSVKVIRVI 446

Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHLEGLA 477
              G++     T      +  IS +++E V  L     ++K G+  R R++G   L+G+ 
Sbjct: 447 PDWGVVC---RTDDGLEGFTHISHLSDERVPTLSNSTGQFKVGTYHRARVIGHSPLDGVM 503

Query: 478 TGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV 537
               +      +     ++  G V+KG V  +   G  V   G V  +    H ++  + 
Sbjct: 504 LLSFEEKVLNQVFMQVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLHYADIRLK 563

Query: 538 KPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595
            P K+FKVGA +  RV  ++    R+ +T KK+LV+S L +  S+A+ T   IT   ++K
Sbjct: 564 HPEKRFKVGASVKARVFAIEPARNRVVLTLKKSLVESDLPVPGSFADVTAGEITPAVVSK 623

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           I   GC V  + G++ F P+SE   +     + ++ VG+ V  RI      S+++  S  
Sbjct: 624 ILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDVDEHSQKLVASVR 683

Query: 656 MK-PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-V 713
              PT V+ + L ++GS VSG+V  +    VVV +I    +   +   +L++H       
Sbjct: 684 QALPTAVAAEKL-EVGSDVSGIVAQIHAEQVVVTLIPSQLT-ALLSLANLSNHRGMGVDE 741

Query: 714 MKSVIKPGYEFDQLLVLD-NESSNLLL----SAKYSLINSAQQLPSDASHIHPNSVVHGY 768
           ++  +K G + + L+V+  N +S L++     AK  +         +   I    V+ G 
Sbjct: 742 LRKSLKVGEKLEDLVVVSKNATSGLIIVANKRAKKGIPTGISTPARNFDAIAVGDVLPGR 801

Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT-YYVGQSVRSNILDVNSETGRIT 827
           V +    G  VR   ++ G    + A D    DLS     V   V   +L V++E+  I 
Sbjct: 802 VISKTPQGAMVRLGKKIRGRVAPTDASD----DLSAPGLKVDDDVLCCVLKVDAESRAID 857

Query: 828 LSLKQS 833
           LS ++S
Sbjct: 858 LSTRKS 863



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 149/552 (26%), Positives = 250/552 (45%), Gaps = 85/552 (15%)

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-AISETETSSSKRAKKKSSYDVGSLV 1067
            K P+K+F  G SV A V A+  +    R++L LK ++ E++               GS  
Sbjct: 563  KHPEKRFKVGASVKARVFAIEPARN--RVVLTLKKSLVESDLPVP-----------GSFA 609

Query: 1068 QAEITEIKPLELRLKFGIG-----FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
                 EI P  +      G     F G       ++  +N V NL   F +G+ V  RI 
Sbjct: 610  DVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRIT 669

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
                  D+ +     ++     L  +    KL        +G  V+G V ++  E  ++T
Sbjct: 670  ------DVDEHSQKLVASVRQALPTAVAAEKL-------EVGSDVSGIVAQIHAEQVVVT 716

Query: 1183 -ISRHLKAQLFILD-SAYEPSELQEFQRRFHIGK-----------AVTGHVLSINKEKKL 1229
             I   L A L + + S +    + E ++   +G+           A +G ++  NK  K 
Sbjct: 717  LIPSQLTALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVANKRAK- 775

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR-ISKILSGVGGLVVQIGPHLYGR 1288
                 +    GIS    +         I  GD++ GR ISK   G    +V++G  + GR
Sbjct: 776  -----KGIPTGISTPARNFDA------IAVGDVLPGRVISKTPQGA---MVRLGKKIRGR 821

Query: 1289 VHFTELKNICVSDPLS--GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1346
            V  T+      SD LS  G      V C VL++    R    ++LS R S       +S+
Sbjct: 822  VAPTD-----ASDDLSAPGLKVDDDVLCCVLKVDAESRA---IDLSTRKS---RVQPDSA 870

Query: 1347 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
                D +     +    DL     V+G VKNV   G F+ L R + A+V++  L D +V+
Sbjct: 871  PAIVDAE-----INSTADLKAGQSVRGIVKNVAPNGLFVALGRSVTARVMIKELFDDFVK 925

Query: 1407 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
              +  F +G +V+G++LSV     RVE+TL+T   +  +++++  L++   G  V   +K
Sbjct: 926  DWKARFAVGDVVSGKILSVG--DDRVEMTLRTKPRKAGAETKL-TLADFKEGQKVEATVK 982

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRI 1523
            RVES+GLF+ I+ +++ GLCH SE+S++   ++      +R  + V+  I  +DKEK +I
Sbjct: 983  RVESFGLFLRIDGSDVSGLCHRSEISDNKKQDVSQALKGFREKDHVRAVITSIDKEKGKI 1042

Query: 1524 SLGMKSSYFKND 1535
            +  +K+S+F +D
Sbjct: 1043 NFSIKASHFSDD 1054



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 119/264 (45%), Gaps = 22/264 (8%)

Query: 593 ITKIEKHGCFVRFYNGVQGFAPRSELGLD--PGCEPSS-MYHVGQVVKCRIMSSIPASRR 649
           I  I   G   R  +G++GF   S L  +  P    S+  + VG   + R++   P    
Sbjct: 443 IRVIPDWGVVCRTDDGLEGFTHISHLSDERVPTLSNSTGQFKVGTYHRARVIGHSPLDGV 502

Query: 650 INLSFMMKP-----TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
           + LSF  K       +V E   + +G ++ G V  ++   + V V  +G   G +   H 
Sbjct: 503 MLLSFEEKVLNQVFMQVGE---LTIGQVLKGTVRKLSDKGLFVNV--QGNVDGVVWPLHY 557

Query: 705 AD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           AD    H E    + + +K      ++  ++   + ++L+ K SL+ S   +P   + + 
Sbjct: 558 ADIRLKHPEKRFKVGASVKA-----RVFAIEPARNRVVLTLKKSLVESDLPVPGSFADVT 612

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
              +    V  I++ GC V   G L  F P+S+A     A+L+  ++VG++V   I DV+
Sbjct: 613 AGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDVD 672

Query: 821 SETGRITLSLKQSCCSSTDASFMQ 844
             + ++  S++Q+  ++  A  ++
Sbjct: 673 EHSQKLVASVRQALPTAVAAEKLE 696



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 27/252 (10%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH-VELSLR 1334
            G+V +    L G  H + L +  V  P      GQF   KV        GT+H   +   
Sbjct: 450  GVVCRTDDGLEGFTHISHLSDERV--PTLSNSTGQF---KV--------GTYHRARVIGH 496

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            S LDG+       LS +     +   ++ +L+   +++G V+ ++ KG F+ +   +D  
Sbjct: 497  SPLDGVML-----LSFEEKVLNQVFMQVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGV 551

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI---NN 1451
            V   + +D  ++ PEK F +G  V  RV ++EP   RV +TLK    ++  +S++    +
Sbjct: 552  VWPLHYADIRLKHPEKRFKVGASVKARVFAIEPARNRVVLTLK----KSLVESDLPVPGS 607

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
             +++  G+I    + ++   G  + +    L      SE S ++V N+  ++  G+ V V
Sbjct: 608  FADVTAGEITPAVVSKILDKGCIVDLFG-GLRAFVPQSEASTNYVANLNDVFFVGKAVNV 666

Query: 1512 KILKVDKEKRRI 1523
            +I  VD+  +++
Sbjct: 667  RITDVDEHSQKL 678



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 118/541 (21%), Positives = 207/541 (38%), Gaps = 140/541 (25%)

Query: 1086 GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSML 1145
            G  G  HI+ ++D++   + N    FK+G    AR+I  S    +    L  LS +  +L
Sbjct: 458  GLEGFTHISHLSDERVPTLSNSTGQFKVGTYHRARVIGHS---PLDGVML--LSFEEKVL 512

Query: 1146 TVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205
                  +++  +  +++IGQ + G V K+ ++   + +  ++   ++ L   Y    L+ 
Sbjct: 513  ------NQVFMQVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLH--YADIRLKH 564

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLR--------PFQDGISDKTVDISNDNMQTFI 1257
             ++RF +G +V   V +I   +  + L L+        P     +D T            
Sbjct: 565  PEKRFKVGASVKARVFAIEPARNRVVLTLKKSLVESDLPVPGSFADVTA----------- 613

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV- 1316
              G+I    +SKIL    G +V +   L   V  +E     V++    +  G+ V  ++ 
Sbjct: 614  --GEITPAVVSKILD--KGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRIT 669

Query: 1317 -------------------------LEISRTVRGT---FHVE----LSLRSSLDGMSSTN 1344
                                     LE+   V G     H E      + S L  + S  
Sbjct: 670  DVDEHSQKLVASVRQALPTAVAAEKLEVGSDVSGIVAQIHAEQVVVTLIPSQLTALLSLA 729

Query: 1345 --SSDLSTDVDTPGKHL---EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S+     VD   K L   EK+EDL   ++V    KN TS    I+++ K   K + + 
Sbjct: 730  NLSNHRGMGVDELRKSLKVGEKLEDL---VVVS---KNATS--GLIIVANKRAKKGIPTG 781

Query: 1400 LSDGYVESPEKEF---PIGKLVAGRVLSVEP------LSKRVE----------------- 1433
            +S     +P + F    +G ++ GRV+S  P      L K++                  
Sbjct: 782  IS-----TPARNFDAIAVGDVLPGRVISKTPQGAMVRLGKKIRGRVAPTDASDDLSAPGL 836

Query: 1434 -------------------VTLKTSDSRTASQS-------EINNLSNLHVGDIVIGQIKR 1467
                               + L T  SR    S       EIN+ ++L  G  V G +K 
Sbjct: 837  KVDDDVLCCVLKVDAESRAIDLSTRKSRVQPDSAPAIVDAEINSTADLKAGQSVRGIVKN 896

Query: 1468 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
            V   GLF+ +   ++     + EL +D V + +  +  G+ V  KIL V  ++  ++L  
Sbjct: 897  VAPNGLFVAL-GRSVTARVMIKELFDDFVKDWKARFAVGDVVSGKILSVGDDRVEMTLRT 955

Query: 1528 K 1528
            K
Sbjct: 956  K 956



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 103/542 (19%), Positives = 220/542 (40%), Gaps = 78/542 (14%)

Query: 1042 KAISETETSSSKRAK-----KKSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHI 1093
            KA +E++ + ++R K     ++ SY     G+LV A +  + PL L +       G I I
Sbjct: 90   KATAESDAAKAERDKDTIRVEELSYKRLVPGTLVLARVHTVLPLHLVVSMPNNLLGHIPI 149

Query: 1094 TEVNDDKSNVVE---------------------NLFSNFKIGQTVTARIIAKSNKPDMKK 1132
            TEV++  +  +                       L   F+ GQ +  R+I  +  P   +
Sbjct: 150  TEVSNTLTAALNADIDAMSEDEDEEDEEKEGAPELTDIFRPGQYIPTRVI--NTFPTASQ 207

Query: 1133 SFLWELSIKPSMLTVSEIGSKLLFEEC-------DVSIGQRVTGYVYKVDNEWALLTISR 1185
            +F+ +  +  +    + +    + E+        DV  G R+ G V   +++   + +  
Sbjct: 208  AFIAQYPVSETTRLAARVELTAVPEKINLDVAKQDVEKGYRIVGEVLGAEDKGYRVGLGL 267

Query: 1186 HLKAQLFILDSAYEPSELQEFQRRFHI-GKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
                 L  ++      E+++      I G+ +   V  +    ++++L L P Q  I   
Sbjct: 268  SADTGLAGVEGFIPIEEVEKNAGGALIPGQLIPTVVSEVKAGGRVVKLTLDP-QTLIHSS 326

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGV---GGLVVQIGPHLYGRVHFTELKNICVSD 1301
              ++SN         G ++ G+++  L       GL V+I     G +    L  +   D
Sbjct: 327  LTEVSN--------IGSLLPGQLASCLVTAVVPSGLNVKICGFYDGTIDIAHL-GLGEDD 377

Query: 1302 PLSGYDEGQFVKCKVL--EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP---G 1356
                Y+ G+ +K ++L   ++ + R      LS    +  ++S  ++D  T ++     G
Sbjct: 378  IEDRYNIGKKIKARILYDTVASSER---RFALSALPHIFNLASPVAADGETPLEIAIPVG 434

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFP 1413
            K L  ++           ++ +   G        L+    +S+LSD  V +      +F 
Sbjct: 435  KTLPSVK----------VIRVIPDWGVVCRTDDGLEGFTHISHLSDERVPTLSNSTGQFK 484

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            +G     RV+   PL     V L + + +  +Q     +  L +G ++ G ++++   GL
Sbjct: 485  VGTYHRARVIGHSPLDG---VMLLSFEEKVLNQV-FMQVGELTIGQVLKGTVRKLSDKGL 540

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1533
            F+ ++  N+ G+      ++  + + E  ++ G  VK ++  ++  + R+ L +K S  +
Sbjct: 541  FVNVQG-NVDGVVWPLHYADIRLKHPEKRFKVGASVKARVFAIEPARNRVVLTLKKSLVE 599

Query: 1534 ND 1535
            +D
Sbjct: 600  SD 601


>gi|357616535|gb|EHJ70248.1| programmed cell death protein 11 [Danaus plexippus]
          Length = 1195

 Score =  186 bits (472), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/268 (35%), Positives = 163/268 (60%), Gaps = 7/268 (2%)

Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI 1716
            +PR+ ++FER + + P+ S +WI YMAF L   ++EKAR++A +AL TIN REE EKLN+
Sbjct: 927  SPRSSEQFERALLAQPDCSQLWIAYMAFHLQATEIEKARAVARKALNTINFREEGEKLNV 986

Query: 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1776
            W+A  NLE+ +G   +E   K  + ALQ  D   +H  LL +   T + +    L+  M+
Sbjct: 987  WLALLNLEHRFGT--KETQQKTLEDALQMNDTYSIHSKLLDILVETSKQQELTALVELMM 1044

Query: 1777 KKFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835
            +K+K + + ++   +   K    E  + V+QR ++ L + +H+  + + A++E   GV D
Sbjct: 1045 RKYK-TLESYVACGEACYKSGMVEKARHVMQRGIVVLEKKEHVSMVVKFAVMERARGVPD 1103

Query: 1836 ---RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892
               R  ++ E +L+ YP+R D+  +Y D   + GDV  +R L ER  +  +P +KMK L+
Sbjct: 1104 GRERCEALLEQMLATYPQRVDVIGVYCDMLCKEGDVQRVRQLMERMTAQKMPARKMKVLY 1163

Query: 1893 KKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            KK++E E+ +G+EE +E V+Q A+++++
Sbjct: 1164 KKWIEVEQKIGDEEHVELVRQNALKFLD 1191



 Score =  144 bits (364), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 145/568 (25%), Positives = 262/568 (46%), Gaps = 66/568 (11%)

Query: 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA---ADALDPILDNEIEANEDNL--LPT 185
           +  G+ L G V    E  +++ LP  + G+  A   +DA + IL+  +    D +  LP 
Sbjct: 75  VKEGLLLLGRVRRALETKILVSLPCRMSGVVMACHISDAFNNILEAYVNDKVDQVRELPQ 134

Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE----TVQEGMVLTAYVK 241
           +F +GQ V+  VL+  D+           SL L+++ + ++ +     + +G ++ A V 
Sbjct: 135 MFRLGQYVAVKVLEASDN-----------SLTLTMMPQDINSDRKATDLHKGALIQAAVT 183

Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
           SIEDHGY++  G+P+   FL ++    NS +++  G+L    ++S+     VV LSS+  
Sbjct: 184 SIEDHGYVMDIGIPNTRAFLAKD--TANSDMELDIGMLTWVTIKSLSADSNVVTLSSELG 241

Query: 302 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV---MLSFLTYFTGTVDIFHLQNTF 358
            + +   ++  G+    + PG  V   V   L+NG+   +L+    +     I  ++   
Sbjct: 242 ALQRSFQRN-PGV----IYPGTAVDFTVHKALDNGIEGHILNNQLAYIQRHQIDTVKGKK 296

Query: 359 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV---GDIYDQSK 415
           P           +K+ AR+L+  P  +   LT+      ++   +  ++   GD+ +++K
Sbjct: 297 PALG--------QKIRARLLYSVPPQQTPFLTMREIFDSSKTNLNEEQIHQDGDVIEEAK 348

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           V++   G  + L +        +     D  + +   L K Y  GS  RVR+L +     
Sbjct: 349 VLK-SWGRTVFLRLSDRSTGFLSLRRGHDFNDHD--DLAKSYPIGSTHRVRVLCY----N 401

Query: 476 LATGILKASAFEGLV----FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 531
           L+  +   S    L+    F  S +  G +V G V  V      V     +    P  HM
Sbjct: 402 LSDYVYSVSDDPALLRQKYFNISQLSVGELVSGTVTEVADQHLRVAV-DRISGYVPRAHM 460

Query: 532 SEFEIV----KP-----GKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSY 580
           +E  +     KP      KK+KVG E+  RVL V   +  + +T K +L+   L +L  Y
Sbjct: 461 TETGVFIDPKKPRNSNVSKKYKVGQEVQARVLVVDETKNSVVLTLKPSLLAEDLPLLMDY 520

Query: 581 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
           +EA    +  G I+ I KH   V F+N V  + P   +G  PG + +  +H GQ+VKC I
Sbjct: 521 SEAHVGKMYTGVISHI-KHYLLVSFFNNVVAYVPSRLVGAQPG-DLADAFHTGQIVKCTI 578

Query: 641 MSSIPASRRINLSFMMKPTRVSEDDLVK 668
           MS  P +++++ S +  P + +++++ K
Sbjct: 579 MSVKPEAKKMSGSLVDAPFQDADNEVKK 606



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 29/194 (14%)

Query: 1059 SSYDVGSLVQAEITEIKPLELRLKFG--IGFHGRIHITEVN---DDKSNVVENLFSNFKI 1113
            S   VG LV   +TE+    LR+      G+  R H+TE     D K     N+   +K+
Sbjct: 424  SQLSVGELVSGTVTEVADQHLRVAVDRISGYVPRAHMTETGVFIDPKKPRNSNVSKKYKV 483

Query: 1114 GQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK 1173
            GQ V AR++      + K S +  L++KPS+L        LL +  +  +G+  TG +  
Sbjct: 484  GQEVQARVLVVD---ETKNSVV--LTLKPSLLAED---LPLLMDYSEAHVGKMYTGVISH 535

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSEL-----QEFQRRFHIGKAVTGHVLSINKEKK 1228
                     I  +L    F    AY PS L      +    FH G+ V   ++S+  E K
Sbjct: 536  ---------IKHYLLVSFFNNVVAYVPSRLVGAQPGDLADAFHTGQIVKCTIMSVKPEAK 586

Query: 1229 LL--RLVLRPFQDG 1240
             +   LV  PFQD 
Sbjct: 587  KMSGSLVDAPFQDA 600



 Score = 48.5 bits (114), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 13/170 (7%)

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD---HLEHATVMKSVIKPGYEFD 725
           +G LVSG V  V    + V V       G +P  H+ +    ++      S +   Y+  
Sbjct: 428 VGELVSGTVTEVADQHLRVAV---DRISGYVPRAHMTETGVFIDPKKPRNSNVSKKYKVG 484

Query: 726 Q-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
           Q     +LV+D   ++++L+ K SL+     L  D S  H   +  G + +I +    V 
Sbjct: 485 QEVQARVLVVDETKNSVVLTLKPSLLAEDLPLLMDYSEAHVGKMYTGVISHI-KHYLLVS 543

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           F   +  + P S+ V  Q  DL+  ++ GQ V+  I+ V  E  +++ SL
Sbjct: 544 FFNNVVAYVP-SRLVGAQPGDLADAFHTGQIVKCTIMSVKPEAKKMSGSL 592



 Score = 40.8 bits (94), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 11/133 (8%)

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1469
            K +PIG     RVL    LS  V      SD     + +  N+S L VG++V G +  V 
Sbjct: 385  KSYPIGSTHRVRVLCYN-LSDYV---YSVSDDPALLRQKYFNISQLSVGELVSGTVTEVA 440

Query: 1470 SYGLFITIEN-TNLVGLCHVSEL------SEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
               L + ++  +  V   H++E        +    N+   Y+ G++V+ ++L VD+ K  
Sbjct: 441  DQHLRVAVDRISGYVPRAHMTETGVFIDPKKPRNSNVSKKYKVGQEVQARVLVVDETKNS 500

Query: 1523 ISLGMKSSYFKND 1535
            + L +K S    D
Sbjct: 501  VVLTLKPSLLAED 513


>gi|183232667|ref|XP_654947.2| rRNA biogenesis protein RRP5 [Entamoeba histolytica HM-1:IMSS]
 gi|169801940|gb|EAL49568.2| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica
            HM-1:IMSS]
          Length = 1710

 Score =  184 bits (466), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1662 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1721
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 1451 DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 1510

Query: 1722 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1781
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 1511 QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 1568

Query: 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 1569 SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 1628

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 1629 FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 1688

Query: 1901 SVGEEERIEYVKQKAMEYVES 1921
              G+E R E+V+  A  +V +
Sbjct: 1689 KYGDESRQEHVRDIAKSFVST 1709



 Score =  123 bits (309), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 248/1160 (21%), Positives = 479/1160 (41%), Gaps = 162/1160 (13%)

Query: 416  VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
            + ++D  +G+   I  T      +++   + +E    + K++K GS  + R++ +   +G
Sbjct: 318  ISKIDENVGI---IGETEDKEEVFLSKKQIKDESCSDIPKEFKIGSTHKGRVMYYSAFDG 374

Query: 476  LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                  + S       +  D+K GM+++G +  V+  G IV+    +   C   +  +  
Sbjct: 375  YCGITTRESILSDKYQSIFDIKSGMIIEGTIKEVNEKGIIVKIGEKIYGFCDKINSGDIP 434

Query: 536  IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
            I      FK   +  FRVL V ++   I +THK+TL+K+   I+++  E     IT G +
Sbjct: 435  IEDLQSVFKKEQKSKFRVLTVNNRNNSIYLTHKRTLMKATTPIITTIEETELNTITFGTV 494

Query: 594  TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
            T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 495  TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKVRIISFDKQLLLCSL 550

Query: 653  SFMMKPTRVSE--DDL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLA 705
            + +     V E  +D+    ++G +  G+V V     +++  I  G  +    +P   + 
Sbjct: 551  N-LFPEENVPEKYEDVSRHFEVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVI 608

Query: 706  DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
            D  E   + K +I+ G    + L+L N+   ++++ K SLI+  +++    S        
Sbjct: 609  DGDEGQDIPK-MIRNGTILKECLLLKNQMGQMVITTKKSLISLRKKIGKFNSKEEMTVGK 667

Query: 766  H-GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
            + GYV  I    CF+ F   +T    R    D     + +   VGQ+V   +        
Sbjct: 668  YIGYVSKIKGKYCFISFYNGVTILCYRMNVSD-TNLPIEEVLEVGQTVYGYL------NK 720

Query: 825  RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
            +   SLK+S   S    FM           +L+  +    E K+      GS ++ ++ +
Sbjct: 721  KGIFSLKESSVGSIKEEFM-----------LLRVERD--VEPKY------GSQLKIEIKD 761

Query: 885  SNDFGVVVSFEEHSDVYGFITHHQLAGATVE--SGSVIQAAILDVAKAERLVDLSLKTVF 942
               +G++   +E  +   FI    + G   E   G+ ++  ++ V K  +++D   + + 
Sbjct: 762  IKPYGIIGKNKEREETI-FIPKTGIEGDIKEMNKGNTMKCIVIGVDKERKMIDCIQEKMI 820

Query: 943  IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASV 1002
              +  E N   + +                     V + KE Y V  L E N  I + + 
Sbjct: 821  TKQHIENNKIYKGK---------------------VLLNKEEYCV-CLVEGN--IVFVNK 856

Query: 1003 SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSK---RAKKKS 1059
               N  K+  K+ +  + +I   M    +   G             T +SK    + K +
Sbjct: 857  IRMNGGKYTVKEEV--EIIIGKEMEGYQNIYEG-------------TINSKPIVYSIKNN 901

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTA 1119
            + ++G  ++  ++        L  G G  GR+H  ++N  K   +      + IG  V  
Sbjct: 902  TINIGEKIEGVVSYTNESISYLNLGKGITGRLH--KINSTKKIEIGEKIECYIIGIQVKG 959

Query: 1120 RIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
             II +  K    +  + ELS+K       E G+     E  +  G+ + G + +   +  
Sbjct: 960  EIIKEKGKEIEGRIEIVELSMK-------EEGNM----EEKIQEGEEIEGIISREMKDGY 1008

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGK--AVTGHVLSINKEKKLLRLVLRPF 1237
            +++ +  LK +L  ++      E+   ++ +++G    V G+    +KE   L       
Sbjct: 1009 IISFNSILKGKLNYIEIGDNIEEININKKEYNVGDKIKVKGYY---SKENIYL------- 1058

Query: 1238 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
               I DK  +I          EG+I+ G +    +    + V I  +  G +H+ ++ N+
Sbjct: 1059 ---IKDKKEEIK---------EGEIIVGEVIGNNTKELKIKVLIKGNRIGYIHYCDISNV 1106

Query: 1298 CVSDPLSGYDEGQFVKCKVL----EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1353
                P      G+++   VL    EI  ++R  +     L+ + D +       + T + 
Sbjct: 1107 FNPFPRDYLQNGKYINMYVLSNKPEILCSMRKEY-----LKEAYDEIFPPLIGGVQTRIV 1161

Query: 1354 TPGKHLEKIEDLSPNMIVQGY-VKNVTSKGCFIMLSRKLDAKVLLSNLSDG---YVESPE 1409
            T        + +    I+ GY +K+   +G  +M+SR +   V    L D    + +   
Sbjct: 1162 TK-------DTIKEGEILTGYIIKSSEEEGVDVMVSRDVTIHVAPGELLDNTSYHGKDFS 1214

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1469
            + F I +LV   ++  E L    E TLK S           ++    V   VI  I    
Sbjct: 1215 RIFCIQRLVKVSIIDKEGL----EGTLKQSVIYPGIIKYFKDIKENIVTKCVIVNIT--- 1267

Query: 1470 SYGLFITIENTNLVGLCHVSELSEDHV--DNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
            S GLF+   N+N+ GLCH S++ +  +    +E  ++  + +  K++ +DK+K R++  +
Sbjct: 1268 SEGLFLRFFNSNIRGLCHCSKIEDKKLTKKEMEKRFKIKDVIMAKVVHIDKKKHRVNFSI 1327

Query: 1528 KSSYFKNDADNLQMSSEEES 1547
            K      D   ++M  EEE+
Sbjct: 1328 KPE----DVGEVEMKDEEET 1343


>gi|330779404|gb|AEC46534.1| programmed cell death 11-like protein [Spodoptera litura]
          Length = 408

 Score =  183 bits (465), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 99/264 (37%), Positives = 167/264 (63%), Gaps = 3/264 (1%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            PR+ ++FER + + PNSS +WI YMAF L   DVEKAR++A +AL TI+ RE  +K N++
Sbjct: 143  PRSSEQFERALLAHPNSSQLWIAYMAFHLQATDVEKARNVARKALSTISFREVLDKFNVY 202

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            VA  ++E  +G    E++ KV + ALQ  +P K+H  LL +Y  T +++    L+  M++
Sbjct: 203  VAMLSIECRFGTM--ESLQKVLEEALQMNEPLKIHSKLLDIYVETGKHQDLVALVELMMR 260

Query: 1778 KFKHSCKVWLRRVQRLLKQQQ-EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836
            K+K    ++++      +    E  + V+Q+A+  L + +H+  + Q A++E +NG  +R
Sbjct: 261  KYKRDPSMYIQCGAACFQLGLVEKARQVMQKAISLLEKKEHVSVLVQFALMENRNGGRER 320

Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
              ++FE +L+ YP R D+ S Y+D  ++  D D IR + ER  S  LP +KMK LFKK++
Sbjct: 321  AEALFEQVLAVYPARVDVCSTYVDMLLKNDDKDHIRQVMERMTSQKLPARKMKILFKKWI 380

Query: 1897 EYEKSVGEEERIEYVKQKAMEYVE 1920
            E E+ +G+ E++E ++Q+A +Y+E
Sbjct: 381  EVEERMGDLEQVEVLRQRAAQYME 404


>gi|167386167|ref|XP_001737645.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165899481|gb|EDR26067.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 1725

 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 158/259 (61%), Gaps = 3/259 (1%)

Query: 1662 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1721
            DE ++ V   P++S  WIK M   +   ++++AR + + A++TIN R+  EKLNIW A  
Sbjct: 1466 DECQKGVEKEPDNSTEWIKLMQCFIQRKEIDEARKVGKTAIETINFRKLEEKLNIWKALM 1525

Query: 1722 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1781
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 1526 QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 1583

Query: 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 1584 SCKVYKKYCNFLMRNNREEEIKNTISKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 1643

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900
            FE IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    KYLE+E+
Sbjct: 1644 FEDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 1703

Query: 1901 SVGEEERIEYVKQKAMEYV 1919
              G+E + E+V+  A  +V
Sbjct: 1704 KYGDESKQEHVRDIAKSFV 1722



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 131/588 (22%), Positives = 252/588 (42%), Gaps = 50/588 (8%)

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           + ++D  +G+   I  T      +++   + +E    + K++K GS  + RI+ +   +G
Sbjct: 328 ITKIDENVGI---IGETEDKEEVFLSKKQIKDEYCLDIPKEFKIGSIHKGRIMYYSAFDG 384

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + S       + +D+K GM+++G +  ++  G  V+    +   C   +  +  
Sbjct: 385 YCGITTRESILSDKYQSINDIKSGMIIEGIIKEINENGINVKIGEKIYGFCDKINSGDIP 444

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
           I      FK   +  FRVL V ++   I +THK+TL+K    I+++  E     IT G +
Sbjct: 445 IEDLKSVFKKDQKSKFRVLTVNNRNNSIYLTHKRTLMKLTTPIITNIEETELNTITFGIV 504

Query: 594 TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 505 TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKIRIISFDKQLLLCSL 560

Query: 653 SFMMKPTRVSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLAD 706
           +   +     + + V    K+G +  G+V V     +++  I  G  +    +P   + D
Sbjct: 561 NLFPEENVPEKYEDVSRHFKVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVID 619

Query: 707 HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVH 766
             E   + K +I+ G    + L+L N+   ++++ K SLI+  Q++    S        +
Sbjct: 620 GDEGKDIPK-MIRNGTIIKECLLLKNQMGQMIITTKKSLISLRQKIGKFNSKEEMTVGKY 678

Query: 767 -GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            GYV  I    CF+ F   +T    R    D     + +    GQ+V   +   N     
Sbjct: 679 IGYVSKIKGKYCFISFYNGVTIVCYRMNVSDSNLP-IEEVLENGQTVYGYLNKKN----- 732

Query: 826 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF-IIG--------- 875
              SLK+S   S    +M    L  E+    +       E+K ++G+ IIG         
Sbjct: 733 -IFSLKESSVGSIKEEYM---LLRIERDVEPKYGSQIKIEIKDIKGYGIIGKSKEREETI 788

Query: 876 ----SVIEGKVHE----SNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDV 927
               + IEG + E    SN   +V+  ++   +   I    +   ++E   + +  ++ +
Sbjct: 789 FIPKTGIEGDIKEISKGSNMKCIVIGVDKERKMIDCIQEKMIKKESIEINKIYKGKVI-I 847

Query: 928 AKAERLVDL-SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974
            K E  V L     VF+++ R  N  +   K++ +    K++  +Q +
Sbjct: 848 NKEEYCVCLVEGNIVFVNKIR-MNGGKYIVKEEVEINIGKEMEGYQNI 894


>gi|183235504|ref|XP_648617.2| rRNA biogenesis protein RRP5 [Entamoeba histolytica HM-1:IMSS]
 gi|169800516|gb|EAL43230.2| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica
            HM-1:IMSS]
          Length = 811

 Score =  182 bits (462), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1662 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1721
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 552  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 611

Query: 1722 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1781
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 612  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 669

Query: 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 670  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 729

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 730  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 789

Query: 1901 SVGEEERIEYVKQKAMEYVES 1921
              G+E R E+V+  A  +V +
Sbjct: 790  KYGDESRQEHVRDIAKSFVST 810


>gi|183233031|ref|XP_001913793.1| rRNA biogenesis protein RRP5 [Entamoeba histolytica HM-1:IMSS]
 gi|169801769|gb|EDS89432.1| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica
            HM-1:IMSS]
          Length = 799

 Score =  182 bits (462), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1662 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1721
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 540  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 599

Query: 1722 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1781
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 600  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 657

Query: 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 658  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 717

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 718  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 777

Query: 1901 SVGEEERIEYVKQKAMEYVES 1921
              G+E R E+V+  A  +V +
Sbjct: 778  KYGDESRQEHVRDIAKSFVST 798


>gi|401885552|gb|EJT49659.1| rRNA processing-related protein [Trichosporon asahii var. asahii
           CBS 2479]
          Length = 1478

 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 209/837 (24%), Positives = 366/837 (43%), Gaps = 92/837 (10%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGGG SLT  E  +  AE   + +A E G   K  KKKK + R+  +   +  +   D
Sbjct: 41  FPRGGGTSLTALEVKQTRAEGARQADA-EMG---KTFKKKKLSTRQMQKAKKEKATAESD 96

Query: 114 GISGKLPR---YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADAL 167
               +  +      +++ K +  G  +   V  V    LV+ +P  L G   +   ++ L
Sbjct: 97  AAKAERDKDTIRVEELSYKRLVPGTLVLARVHTVLPLHLVVSMPNNLLGHIPITEVSNTL 156

Query: 168 DPILDNEIEANEDNL------------LPTIFHVGQLVSCIVLQLDDDKKE--IGKRKIW 213
              L+ +I+A  ++             L  IF  GQ +   V+       +  I +  + 
Sbjct: 157 TAALNADIDAMSEDEDEEDEEKEGAPELTDIFRPGQYIPTRVINTFPTASQAFIAQYPVS 216

Query: 214 LSLRLSLLYK----------GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG---- 259
            + RL+   +           ++ + V++G  +   V   ED GY +  GL + TG    
Sbjct: 217 ETTRLAARVELTAVPEKINLDVAKQDVEKGYRIVGEVLGAEDKGYRVGLGLSADTGLAGV 276

Query: 260 --FLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
             F+P   + +N+G  + PG L+  VV  +    +VV L+ DP T+      ++  I   
Sbjct: 277 EGFIPIEEVEKNAGGALIPGQLIPTVVSEVKAGGRVVKLTLDPQTLIHSSLTEVSNIGS- 335

Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
            L+PG + S  V +++ +G+ +    ++ GT+DI HL       + ++ YN  KK+ ARI
Sbjct: 336 -LLPGQLASCLVTAVVPSGLNVKICGFYDGTIDIAHL--GLGEDDIEDRYNIGKKIKARI 392

Query: 378 LF--VDPTSRAVGLTLNPYLLHNRAPPSH---------VKVGDIYDQSKVVRVDRGLGLL 426
           L+  V  + R   L+  P++ +  +P +          + VG      KV+RV    G  
Sbjct: 393 LYDTVASSERRFALSALPHIFNLASPVAADGETPLEIAIPVGKTLPSVKVIRVIPDWG-- 450

Query: 427 LDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAF 486
             +P+   ST                   ++K G+  R R++G   L+G+     +    
Sbjct: 451 -RVPTLSNST------------------GQFKVGTYHRARVIGHSPLDGVMLLSFEEKVL 491

Query: 487 EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG 546
             +     ++  G V+KG V  +   G  V   G V  +    H ++  +  P K+FKVG
Sbjct: 492 NQVFMQVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLHYADIRLKHPEKRFKVG 551

Query: 547 AELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVR 604
           A +  RV  ++    R+ +T KK+LV+S L +  S+A+ T   IT   ++KI   GC V 
Sbjct: 552 ASVKARVFAIEPARNRVVLTLKKSLVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVD 611

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK-PTRVSE 663
            + G++ F P+SE   +     + ++ VG+ V  RI      S+++  S     PT V+ 
Sbjct: 612 LFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDVDEHSQKLVASVRQALPTAVAA 671

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGY 722
           + L ++GS VSG+V  +    VVV +I    +   +   +L++H       ++  +K G 
Sbjct: 672 EKL-EVGSDVSGIVAQIHAEQVVVTLIPSQLT-ALLSLANLSNHRGMGVDELRKSLKVGE 729

Query: 723 EFDQLLVLD-NESSNLLL----SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
           + + L+V+  N +S L++     AK  +         +   I    V+ G V +    G 
Sbjct: 730 KLEDLVVVSKNATSGLIIVANKRAKKGIPTGISTPARNFDAIAVGDVLPGRVISKTPQGA 789

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKT-YYVGQSVRSNILDVNSETGRITLSLKQS 833
            VR   ++ G    + A D    DLS     V   V   +L V++E+  I LS ++S
Sbjct: 790 MVRLGKKIRGRVAPTDASD----DLSAPGLKVDDDVLCCVLKVDAESRAIDLSTRKS 842



 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 149/552 (26%), Positives = 247/552 (44%), Gaps = 85/552 (15%)

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-AISETETSSSKRAKKKSSYDVGSLV 1067
            K P+K+F  G SV A V A+  +    R++L LK ++ E++               GS  
Sbjct: 542  KHPEKRFKVGASVKARVFAIEPARN--RVVLTLKKSLVESDLPVP-----------GSFA 588

Query: 1068 QAEITEIKPLELRLKFGIG-----FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
                 EI P  +      G     F G       ++  +N V NL   F +G+ V  RI 
Sbjct: 589  DVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTNYVANLNDVFFVGKAVNVRIT 648

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
                  D+ +     ++     L  +    KL        +G  V+G V ++  E  ++T
Sbjct: 649  ------DVDEHSQKLVASVRQALPTAVAAEKL-------EVGSDVSGIVAQIHAEQVVVT 695

Query: 1183 -ISRHLKAQLFILD-SAYEPSELQEFQRRFHIGK-----------AVTGHVLSINKEKKL 1229
             I   L A L + + S +    + E ++   +G+           A +G ++  NK  K 
Sbjct: 696  LIPSQLTALLSLANLSNHRGMGVDELRKSLKVGEKLEDLVVVSKNATSGLIIVANKRAK- 754

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGR-ISKILSGVGGLVVQIGPHLYGR 1288
                 +    GIS    +         I  GD++ GR ISK   G    +V++G  + GR
Sbjct: 755  -----KGIPTGISTPARNFDA------IAVGDVLPGRVISKTPQGA---MVRLGKKIRGR 800

Query: 1289 VHFTELKNICVSDPLS--GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSS 1346
            V  T+      SD LS  G      V C VL++    R    ++LS R S          
Sbjct: 801  VAPTD-----ASDDLSAPGLKVDDDVLCCVLKVDAESRA---IDLSTRKS-----RVQPY 847

Query: 1347 DLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
                 VD     +    DL     V+G VKNV   G F+ L R + A+V++  L D +V+
Sbjct: 848  SAPAIVDA---EINSTADLKAGQSVRGIVKNVAPNGLFVALGRSVTARVMIKELFDDFVK 904

Query: 1407 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
              +  F +G +V+G++LSV     RVE+TL+T   +  +++++  L++   G  V   +K
Sbjct: 905  DWKARFAVGDVVSGKILSVG--DDRVEMTLRTKPRKAGAETKL-TLADFKEGQKVEATVK 961

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRI 1523
            RVES+GLF+ I+ +++ GLCH SE+S++   ++      +R  + V+  I  +DKEK +I
Sbjct: 962  RVESFGLFLRIDGSDVSGLCHRSEISDNKKQDVSQALKGFREKDHVRAVITSIDKEKGKI 1021

Query: 1524 SLGMKSSYFKND 1535
            +  +K+S+F +D
Sbjct: 1022 NFSIKASHFSDD 1033



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 87/166 (52%), Gaps = 8/166 (4%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
            ++ +L+   +++G V+ ++ KG F+ +   +D  V   + +D  ++ PEK F +G  V  
Sbjct: 497  QVGELTIGQVLKGTVRKLSDKGLFVNVQGNVDGVVWPLHYADIRLKHPEKRFKVGASVKA 556

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEI---NNLSNLHVGDIVIGQIKRVESYGLFITI 1477
            RV ++EP   RV +TLK    ++  +S++    + +++  G+I    + ++   G  + +
Sbjct: 557  RVFAIEPARNRVVLTLK----KSLVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVDL 612

Query: 1478 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
                L      SE S ++V N+  ++  G+ V V+I  VD+  +++
Sbjct: 613  FG-GLRAFVPQSEASTNYVANLNDVFFVGKAVNVRITDVDEHSQKL 657



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 104/227 (45%), Gaps = 19/227 (8%)

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-----TRVSEDDLVKLGSLVSGVVDVVT 681
           +  + VG   + R++   P    + LSF  K       +V E   + +G ++ G V  ++
Sbjct: 459 TGQFKVGTYHRARVIGHSPLDGVMLLSFEEKVLNQVFMQVGE---LTIGQVLKGTVRKLS 515

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
              + V V  +G   G +   H AD    H E    + + +K      ++  ++   + +
Sbjct: 516 DKGLFVNV--QGNVDGVVWPLHYADIRLKHPEKRFKVGASVKA-----RVFAIEPARNRV 568

Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
           +L+ K SL+ S   +P   + +    +    V  I++ GC V   G L  F P+S+A   
Sbjct: 569 VLTLKKSLVESDLPVPGSFADVTAGEITPAVVSKILDKGCIVDLFGGLRAFVPQSEASTN 628

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
             A+L+  ++VG++V   I DV+  + ++  S++Q+  ++  A  ++
Sbjct: 629 YVANLNDVFFVGKAVNVRITDVDEHSQKLVASVRQALPTAVAAEKLE 675


>gi|195111152|ref|XP_002000143.1| GI22689 [Drosophila mojavensis]
 gi|193916737|gb|EDW15604.1| GI22689 [Drosophila mojavensis]
          Length = 1396

 Score =  181 bits (460), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/267 (38%), Positives = 154/267 (57%), Gaps = 8/267 (2%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P T D+FERLV + PN S  WI+YM+FMLS  +++KAR IA RA++TI  RE  E  N+W
Sbjct: 1129 PETIDQFERLVLAEPNDSKTWIQYMSFMLSNTEIDKAREIARRAIKTIAFRETKELRNMW 1188

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            +A  NLE  Y +   + V+K    AL + DP + ++ L+ + +   Q +    +L  +++
Sbjct: 1189 MALLNLELSYNSSNFDDVLK---EALTHTDPLETYIKLVEVLKAHNQKERLISVLNNLMR 1245

Query: 1778 KFKHSCKVWLRRVQR---LLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
            KFK   +VW  RV           E VQ  +QRA+  LP+++HI  I   A +  KN   
Sbjct: 1246 KFKSDLQVW--RVAADAYFWLGMPERVQPTLQRAINVLPKNEHINCIVAFAKIYAKNNDN 1303

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
               +++ + I++ YPKR D+W +Y D  I+ G +D  R L ERA+   L P KM  ++KK
Sbjct: 1304 GMAQTLLDDIVTSYPKRIDIWVLYADMLIKAGLIDSARNLMERAVLQKLQPDKMLVIYKK 1363

Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYVES 1921
            +L+ E+  G EE    VK+ A +YV+S
Sbjct: 1364 FLDLEEKHGTEENAARVKKLAEQYVQS 1390



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 136/583 (23%), Positives = 252/583 (43%), Gaps = 50/583 (8%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG  +L Q   D   +  +  F A +R + K  K K+K  E    E  D L +    
Sbjct: 8   FPRGGIANL-QANTDS--STSNLIFGATQRKIKKAPKLKEKPVE---GEKGDQLQAF--- 58

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP---I 170
                    A  +T   +   M + GVV   +   L I LPG +   A  AD  D    +
Sbjct: 59  --------SAETLTYDTLQENMLVMGVVKATDATSLQIALPGRMTARALVADISDAYGRV 110

Query: 171 LDNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 228
             + +  +++E   L  +F+VGQ+V    ++   D  E  +  + L+L+ S +   L   
Sbjct: 111 AQSYMAGDSSEYRDLTALFNVGQIVYGRAIKTRKDS-ESKRMSLLLTLKPSEVNSSLHHA 169

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSID 288
            +++G +    ++ I++HG ++  G+     F+P  N A+   I     L ++ +    D
Sbjct: 170 NIKKGFIFVGAIEEIQEHGCVIETGIDGLQAFVPIENAAQKHHIGQLIFLKVKQIQHDSD 229

Query: 289 R-TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFT 346
           + T + V +  D     K   K     ++D ++PG +V  +V   L+NG+  S +   F 
Sbjct: 230 KSTCQCVCIEQD-----KLKIKSQHETNLDYILPGSIVKFKVTKHLKNGLEGSIMNEAFR 284

Query: 347 GTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-LHNRAPPSH- 404
           G V+  HL     +     DY  +++  AR+L+V P ++ V LT N  + +H   P S  
Sbjct: 285 GYVNEHHLAEALQSP---QDYEVNEEYLARLLYVMPLTKLVYLTFNLNITVHPEQPESEG 341

Query: 405 ---VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK--LEKKYKE 459
              +K G I ++++V+R   G G+++ +        +Y +I    +    +  +  KY  
Sbjct: 342 EELLKKGSIVEKARVLRHGTG-GIVVLLNHKYKGLISYGSIKSNFKGNYDQDVVLAKYSS 400

Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD-SFGAIVQF 518
            S  +VR+LG+  +E L       +     ++T  D++ G +V  +++  D   G     
Sbjct: 401 KSKHKVRVLGYDVIESLYYCTDDPNVVNEKMYTLEDIQTGDIVSARIVKPDPKIGGYSVK 460

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAI 576
            G V  +     ++      P  +++VG  +  RVL +   R    ++ +   +   + +
Sbjct: 461 IGKVNGIIEQLQLA------PNTRYEVGQRVRCRVLEISLDRKICYLSSRNEYLSKGIKL 514

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG 619
           L+S   A    +  G + K E     V+F  G++G   +  L 
Sbjct: 515 LTSLQLAQPGHVFTGTVVKCEASYVLVKFCGGIKGVLHKQRLN 557



 Score = 41.6 bits (96), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 25/152 (16%)

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE----------- 1411
            + L  NM+V G VK   +    I L  ++ A+ L++++SD Y    +             
Sbjct: 66   DTLQENMLVMGVVKATDATSLQIALPGRMTARALVADISDAYGRVAQSYMAGDSSEYRDL 125

Query: 1412 ---FPIGKLVAGRVLSV--EPLSKRVEVTLKTSDSRTASQSEINNL---SNLHVGDIVIG 1463
               F +G++V GR +    +  SKR+ + L      T   SE+N+    +N+  G I +G
Sbjct: 126  TALFNVGQIVYGRAIKTRKDSESKRMSLLL------TLKPSEVNSSLHHANIKKGFIFVG 179

Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDH 1495
             I+ ++ +G  I      L     +   ++ H
Sbjct: 180  AIEEIQEHGCVIETGIDGLQAFVPIENAAQKH 211


>gi|157868539|ref|XP_001682822.1| rRNA biogenesis protein-like protein [Leishmania major strain
            Friedlin]
 gi|68126278|emb|CAJ03797.1| rRNA biogenesis protein-like protein [Leishmania major strain
            Friedlin]
          Length = 738

 Score =  181 bits (460), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 163/294 (55%), Gaps = 29/294 (9%)

Query: 1648 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1707
            A ER +E   P +P+EF+RL+ ++PNSS+VW++YMA+ + +   E AR +AE+AL TI +
Sbjct: 442  AYERGMETAVPTSPEEFQRLLLANPNSSYVWMQYMAYHVGLQQYEAARQVAEKALSTIGV 501

Query: 1708 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1767
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 502  REQEELLNVWVAYLNIENLYGT--EESLSAVFRRAQQR------QLNQLTLFERLADIYA 553

Query: 1768 ADE-------LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRHK 1816
            A         L   M  KF+   + W R    L+ Q   G +  ++R L      L R  
Sbjct: 554  ASRKPNQLLALCRAMTGKFRTERRTWERLGIVLVDQ---GKRDQLKRTLKDMGDVLKRDD 610

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVD 1869
                I   AI E+K+G  + GR++FEG+L + PKR+D+W+IY DQE+ L       G   
Sbjct: 611  ATLAIVHIAIHEYKHGSPENGRALFEGLLRKVPKRSDVWTIYTDQEMGLLNRKDPMGSTL 670

Query: 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
             +R + +R ++++   K M+ +  ++L +EK  G    +E VK+ A  YVES +
Sbjct: 671  QVRQILQRTVAMNFSAKVMQQVLTRFLSFEKLHGTPADVESVKKCARTYVESKI 724


>gi|449703273|gb|EMD43755.1| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica KU27]
          Length = 725

 Score =  181 bits (460), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1662 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1721
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 466  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 525

Query: 1722 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1781
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 526  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 583

Query: 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 584  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 643

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 644  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 703

Query: 1901 SVGEEERIEYVKQKAMEYVES 1921
              G+E R E+V+  A  +V +
Sbjct: 704  KYGDESRQEHVRDIAKSFVST 724


>gi|307107853|gb|EFN56095.1| hypothetical protein CHLNCDRAFT_145628 [Chlorella variabilis]
          Length = 1396

 Score =  181 bits (459), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 158/534 (29%), Positives = 240/534 (44%), Gaps = 82/534 (15%)

Query: 101 NETVDDLGSLF-GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG 159
            E  D+  + F G  + GKLP++   +  KN+S G KLWG V EV+ ++LV+ LP GLRG
Sbjct: 64  GEGGDEEDAFFSGLALQGKLPKFVELLKFKNLSRGCKLWGAVIEVSPRELVVSLPHGLRG 123

Query: 160 LARAADALDPILDNE-------------------------------IEANEDNLLPTI-- 186
               A+A D +                                     A  + +LP +  
Sbjct: 124 HVAYAEASDWLAGQSKAAAAAGAEAAGEDGAAAIAAAAAGKKRKAGTAAATEVVLPPLTD 183

Query: 187 -FHVGQLVSCIVLQLDDDKK----------------------EIGKRKIWLSLRLSLLYK 223
            F +GQLV   V+ L                              K+++ LSLR+S +  
Sbjct: 184 LFTIGQLVRGTVVALRSGSSGDSESAGKAGAKKAAAAEGGAGGAKKKRVDLSLRVSKMNA 243

Query: 224 GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 283
           GL  E+++EG+ L A V S+EDHGY+L  G+   +GFLP+   A          LL   V
Sbjct: 244 GLGPESLREGLALPACVSSVEDHGYLLALGVKGVSGFLPKKAAAAAGRALAPGMLLDVAV 303

Query: 284 VRSIDRTRKVVYLS-----SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVM 338
                        S       P+ V+  V ++ +G++I  L+PG +V+ RV+++L +G++
Sbjct: 304 PPGGAPKPAGGGGSVLGVVCAPEAVAMAVAREWEGLNIGSLLPGQLVAARVRNVLSDGLL 363

Query: 339 LSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHN 398
            SFLTYF+GTVD FHL       +W+  ++ ++++ ARIL+VDP S+ V LTL+ +L+  
Sbjct: 364 CSFLTYFSGTVDPFHLGADL-AADWRKQFSPNQRLRARILYVDPASKRVALTLHRHLISA 422

Query: 399 RAPPSHVKVGDIYDQ------SKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
             P +   +G +  +        V RV+   GLL+ + S   S  A V +   ++    K
Sbjct: 423 SLPVNFPMLGQVDVRPGMPVSGTVSRVEE-YGLLVALTS---SIRALVPVLHASDVGTAK 478

Query: 453 LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAV 509
             +K+K G  V  ++L         T  LK S        +    D  PG    G V   
Sbjct: 479 ALRKFKAGQTVAGKVLTVDPATKKVTMTLKPSLVGSKLPPIARTQDAVPGGRSHGVVTGA 538

Query: 510 DSFGAIVQFPGGVKALCPLPHMSEFEIV---KPGKKFKVGAELVFRVLGVKSKR 560
             FG  V F GGV  L    H+SE  +    KP + F+ G  +  RVLG    R
Sbjct: 539 RDFGVFVSFFGGVTGLA---HVSECGLAADQKPPEAFQAGQVVKCRVLGADPSR 589



 Score =  180 bits (457), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 154/605 (25%), Positives = 271/605 (44%), Gaps = 85/605 (14%)

Query: 753  PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
            PS    +   +++ GYV ++     FVRFL  LTG A  ++  D   +D    +  GQSV
Sbjct: 754  PSAVEAVAEGALLAGYVASVTSGAVFVRFLDGLTGRAGLAQLSDTFVSDPHLFFREGQSV 813

Query: 813  RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
            R+ ++D   +  R +++LKQS C S DA+++Q  F     +   ++  ++ +++ W   F
Sbjct: 814  RATVVDAQRQ--RFSVALKQSLCGSRDAAYLQSLF---SDLEAAEALSNDAADVDWAA-F 867

Query: 873  IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQL-AGATVESGSVIQAAILDVAKAE 931
             IG +  G+VHE+  +G++   E H+DV G +  HQ+ AGA+ E G+ ++A +LD  K E
Sbjct: 868  AIGGIAPGEVHEAKGYGLICDLEAHADVVGLVAPHQMPAGASREPGTSVRAVVLDANKRE 927

Query: 932  RLVDLSLKTVFIDRFR-----------EANSNRQAQKKKRKREASKDLGVHQTVNAIVEI 980
             +VDLSL+   +   +                ++      K  A+ +L   Q +   VE+
Sbjct: 928  GVVDLSLQPRLVAAAQAAAAAADAETAPKKKKQKKAAVGGKAAAAAELKEGQRLECKVEL 987

Query: 981  VKE--NYLVLSLPEYNHS------IGYASVSDYNTQ-KFPQKQFLNGQSVIATVMALPSS 1031
            VKE   Y V++LP  + S      +G+   +D+N Q +  Q+    G S+ A+V ALPS 
Sbjct: 988  VKEEAGYCVVTLPAADGSPTGSPLLGFLPTTDFNLQYQQHQQPPRPGDSLTASVAALPSP 1047

Query: 1032 STAGRLLLLLK---------------AISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
            +T GRLLL                    ++   S  ++A++   +  GS V+A +     
Sbjct: 1048 ATGGRLLLAAPVGGKPVKPAAAAGGTGAAKRPQSDKQQAQRMQQHATGSCVEATV----- 1102

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1136
                        G +H    + D   +   +     +G+  TA         + ++  + 
Sbjct: 1103 ------------GAVHALHADLDLDKLAVAV-----LGRVTTA---------EGRRHSVL 1136

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECD----VSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
            E S +P  ++ +  G  L    C     +  GQ++ GYV  V         S  ++ + F
Sbjct: 1137 ECSSRPEAVSAARAGQALPRHPCPALAALRPGQQLQGYVQDVQQGHVWCAFSPSVRGRAF 1196

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
               +A    E +   +RF  G+ V   V+ ++K++K L + L      +       S   
Sbjct: 1197 ATQAASSIEECERLGKRFKPGQPVQATVVHVDKKRKALDVSL------LPAAPEAASEAA 1250

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
                   G +  GR+S +  G GG+ V++     GRV  T++ +  V + L+G   GQ+ 
Sbjct: 1251 AAGAPAPGTVALGRVSAV--GGGGVRVRLSARSVGRVALTDIHDGAVEECLAGLQAGQYC 1308

Query: 1313 KCKVL 1317
            +  VL
Sbjct: 1309 QAVVL 1313



 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 2/168 (1%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           DV+PGM V G V  V+ +G +V     ++AL P+ H S+    K  +KFK G  +  +VL
Sbjct: 435 DVRPGMPVSGTVSRVEEYGLLVALTSSIRALVPVLHASDVGTAKALRKFKAGQTVAGKVL 494

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V   +K++T+T K +LV SKL  ++   +A     +HG +T     G FV F+ GV G 
Sbjct: 495 TVDPATKKVTMTLKPSLVGSKLPPIARTQDAVPGGRSHGVVTGARDFGVFVSFFGGVTGL 554

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
           A  SE GL    +P   +  GQVVKCR++ + P+ + + LS + KP +
Sbjct: 555 AHVSECGLAADQKPPEAFQAGQVVKCRVLGADPSRKGLKLSLVTKPKK 602



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 2/164 (1%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            D+ P M V G V  V   G  + L+  + A V + + SD       ++F  G+ VAG+VL
Sbjct: 435  DVRPGMPVSGTVSRVEEYGLLVALTSSIRALVPVLHASDVGTAKALRKFKAGQTVAGKVL 494

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1483
            +V+P +K+V +TLK S   +     I    +   G    G +     +G+F++     + 
Sbjct: 495  TVDPATKKVTMTLKPSLVGS-KLPPIARTQDAVPGGRSHGVVTGARDFGVFVSFFG-GVT 552

Query: 1484 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
            GL HVSE            ++AG+ VK ++L  D  ++ + L +
Sbjct: 553  GLAHVSECGLAADQKPPEAFQAGQVVKCRVLGADPSRKGLKLSL 596



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 11/175 (6%)

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
            I  L P  +V   V+NV S G            V   +L         K+F   + +  R
Sbjct: 341  IGSLLPGQLVAARVRNVLSDGLLCSFLTYFSGTVDPFHLGADLAADWRKQFSPNQRLRAR 400

Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV--GDIVIGQIKRVESYGLFITIEN 1479
            +L V+P SKRV +TL       +       L  + V  G  V G + RVE YGL + + +
Sbjct: 401  ILYVDPASKRVALTLHRHLISASLPVNFPMLGQVDVRPGMPVSGTVSRVEEYGLLVALTS 460

Query: 1480 T--NLVGLCHVSELSEDHVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +   LV + H S+     V   + +  ++AG+ V  K+L VD   +++++ +K S
Sbjct: 461  SIRALVPVLHASD-----VGTAKALRKFKAGQTVAGKVLTVDPATKKVTMTLKPS 510



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 110/264 (41%), Gaps = 21/264 (7%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G LV A +  +    L   F   F G +    +  D   +  +    F   Q + ARI+ 
Sbjct: 347  GQLVAARVRNVLSDGLLCSFLTYFSGTVDPFHLGAD---LAADWRKQFSPNQRLRARIL- 402

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTI 1183
                P  K+     L++   +++ S   +  +  + DV  G  V+G V +V+    L+ +
Sbjct: 403  -YVDPASKRV---ALTLHRHLISASLPVNFPMLGQVDVRPGMPVSGTVSRVEEYGLLVAL 458

Query: 1184 SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
            +  ++A + +L ++   +   +  R+F  G+ V G VL+++   K + + L+P   G   
Sbjct: 459  TSSIRALVPVLHASDVGTA--KALRKFKAGQTVAGKVLTVDPATKKVTMTLKPSLVGSKL 516

Query: 1244 KTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSD 1301
              +  + D          + GGR   +++G    G+ V     + G  H +E        
Sbjct: 517  PPIARTQDA---------VPGGRSHGVVTGARDFGVFVSFFGGVTGLAHVSECGLAADQK 567

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRG 1325
            P   +  GQ VKC+VL    + +G
Sbjct: 568  PPEAFQAGQVVKCRVLGADPSRKG 591



 Score = 48.1 bits (113), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 22/144 (15%)

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
            +E ++   ++ GYV +VTS   F+     L  +  L+ LSD +V  P   F  G+ V  R
Sbjct: 757  VEAVAEGALLAGYVASVTSGAVFVRFLDGLTGRAGLAQLSDTFVSDPHLFFREGQSV--R 814

Query: 1422 VLSVEPLSKRVEVTLKTS--DSRTAS--QSEINNL---------------SNLHVGDIVI 1462
               V+   +R  V LK S   SR A+  QS  ++L               +   +G I  
Sbjct: 815  ATVVDAQRQRFSVALKQSLCGSRDAAYLQSLFSDLEAAEALSNDAADVDWAAFAIGGIAP 874

Query: 1463 GQIKRVESYGLFITIE-NTNLVGL 1485
            G++   + YGL   +E + ++VGL
Sbjct: 875  GEVHEAKGYGLICDLEAHADVVGL 898



 Score = 44.7 bits (104), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 22/241 (9%)

Query: 602 FVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL-------- 652
           F+ +++G V  F     LG D   +    +   Q ++ RI+   PAS+R+ L        
Sbjct: 366 FLTYFSGTVDPF----HLGADLAADWRKQFSPNQRLRARILYVDPASKRVALTLHRHLIS 421

Query: 653 -SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
            S  +    + + D V+ G  VSG V  V    ++V + +    +  +P  H +D +  A
Sbjct: 422 ASLPVNFPMLGQVD-VRPGMPVSGTVSRVEEYGLLVALTSS--IRALVPVLHASD-VGTA 477

Query: 712 TVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYV 769
             ++          ++L +D  +  + ++ K SL+ S  +LP  A      P    HG V
Sbjct: 478 KALRKFKAGQTVAGKVLTVDPATKKVTMTLKPSLVGS--KLPPIARTQDAVPGGRSHGVV 535

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
               + G FV F G +TG A  S+          + +  GQ V+  +L  +     + LS
Sbjct: 536 TGARDFGVFVSFFGGVTGLAHVSECGLAADQKPPEAFQAGQVVKCRVLGADPSRKGLKLS 595

Query: 830 L 830
           L
Sbjct: 596 L 596


>gi|449018016|dbj|BAM81418.1| similar to rRNA biogenesis protein; rrp5 homolog; multiple S1 rna
            binding domain protein [Cyanidioschyzon merolae strain
            10D]
          Length = 2038

 Score =  181 bits (459), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/312 (35%), Positives = 176/312 (56%), Gaps = 16/312 (5%)

Query: 1620 DEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWI 1679
            D ++++DE +       + E  E+  RA  E L +   P+T  +FER +   PN   +WI
Sbjct: 1721 DWSRSVDEASGAARAPLDDEALERGERALVESLHK---PQTAADFERALLGRPNDPQLWI 1777

Query: 1680 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1739
             YMA  L+  +  +AR IAERALQTI+ RE   ++ +W+AY NLE       +     +F
Sbjct: 1778 GYMALHLATGNELEARGIAERALQTIHYREYQARMRVWIAYLNLERSANAAADPLESDIF 1837

Query: 1740 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRR-VQRLLKQQ 1797
            +RALQ CD  ++HL L    E  ++ KLA  +     ++  H +  VW+       L+  
Sbjct: 1838 RRALQNCDSLQLHLRLARSLEAAQEVKLAGRVYEHACRRHGHQTASVWIAYGAFCFLRSS 1897

Query: 1798 QEGV-QAVVQRALLSL--PRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTD 1853
            QE + + +++RAL +L  P  +H++ I + A  EFK +G  +RGR++ E ++  +PKR D
Sbjct: 1898 QEVLGRTLLERALRALMDP-AQHVQCILKFATFEFKGSGEPERGRTLLENLIQAFPKRLD 1956

Query: 1854 LWSIYLDQEIRL-----GDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEER 1907
             W++YLD E+ L     G ++L+R LF R  +L +L  K+ K  FK+YLE E++ G+   
Sbjct: 1957 FWNVYLDMELMLLRQERGKLELVRRLFRRCTALPNLSLKQAKHFFKRYLEVERAFGDASS 2016

Query: 1908 IEYVKQKAMEYV 1919
            +E+VKQ A  YV
Sbjct: 2017 VEHVKQAARAYV 2028



 Score = 84.0 bits (206), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 173/386 (44%), Gaps = 39/386 (10%)

Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
           G++    + S +  R+   L +DP  V++  T+     +++ L PGM+V  +V S  E  
Sbjct: 250 GMVCWASLASWNEQRRTGILQNDPKMVAEAFTRG--HWTLEQLSPGMLVEAQVLSRDERF 307

Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKK---VNARILFVDPTSRAVGLTLNP 393
            ++ FL  F G ++ FHL        W+ D+ + +    +  R++++D   R + +T   
Sbjct: 308 AIVRFLQVFEGILEWFHLD------QWE-DFARLEPDAILRVRLIYIDCRRRRIMVTART 360

Query: 394 YLLHNRAPPSHVKV------GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
            L++    P  V        G   +  +V +++ G G+ L      +    +     +++
Sbjct: 361 SLVNTLTLPLLVSAARRYHRGSFVESLRVFKIENGRGIWLRKDKEAIYF--FADRKMLSD 418

Query: 448 EEVRKLEKKYKEGSCV-RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506
           E   ++E+ +  G+ V R R++    +EG+    LK S  E      S+++PG +V+ +V
Sbjct: 419 ERFSRMERLFPLGTVVPRARVVSHMAMEGIVRVSLKPSLLERKFMDVSELEPGALVRCRV 478

Query: 507 IAVDSFGAIVQFPG-------GVKALCPLPHMSEFEIV--KPGKKFKVGAELVFRVLGV- 556
           +   S       P         +    PL  +++  +   +  KKF  G++L  RV  V 
Sbjct: 479 LGWISVTPATATPSLRVSIEDCLSGEIPLELLTDVPVQWRRLEKKFPPGSQLRCRVWLVY 538

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCF-VRFYNGVQGFAP 614
            K K++ +T +++LV S L IL+ +       +  G +   +  G + V FY    G  P
Sbjct: 539 PKRKQVLLTARRSLVDSDLPILAGWDTMQQGQVYAGILGPRDPSGAYRVLFYQRFTGILP 598

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRI 640
            + LG +      + +  GQV++ R+
Sbjct: 599 -ANLGTE-----MASFKSGQVIRVRV 618



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 98/200 (49%), Gaps = 22/200 (11%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +V  +V++V   G F+ L+  L A+ LL +L++G+V  P + +P+G  V   +       
Sbjct: 1394 VVGAFVRHVDQAGVFLNLAPGLVARCLLRDLAEGFVPDPVQVYPVGMHVQAMITDCGGSD 1453

Query: 1430 KR-VEVTLKTSDSRTASQSEINNL------SNLHVGDIVIGQIKRVESYGLFITI--ENT 1480
             R V V+L+ +  +   Q +          S +H+G + +G+++RV  +G+F+ +  + T
Sbjct: 1454 ARHVRVSLRAAQQQQQQQQQRAVAAEQAPTSAVHIGGVYLGRVRRVVPFGIFVELLTDRT 1513

Query: 1481 N-------LVGLCHVSELSEDH----VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            +          LCH SEL E       + +   +R G+ + V ++  D    R+SL  K+
Sbjct: 1514 DEGDAQVLATALCHRSELVEQGPWPLPEELPQRFRVGQHLPVLVVARDAAG-RLSLSAKA 1572

Query: 1530 SYFKNDADNLQMSSEEESDE 1549
            S  K +A   Q +S +  DE
Sbjct: 1573 SLIK-EALATQCASAKSIDE 1591


>gi|183234827|ref|XP_001914090.1| rRNA biogenesis protein RRP5 [Entamoeba histolytica HM-1:IMSS]
 gi|169800889|gb|EDS89135.1| rRNA biogenesis protein RRP5, putative [Entamoeba histolytica
            HM-1:IMSS]
          Length = 517

 Score =  180 bits (457), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 158/261 (60%), Gaps = 3/261 (1%)

Query: 1662 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1721
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 258  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 317

Query: 1722 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1781
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 318  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 375

Query: 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 376  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 435

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 436  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 495

Query: 1901 SVGEEERIEYVKQKAMEYVES 1921
              G+E R E+V+  A  +V +
Sbjct: 496  KYGDESRQEHVRDIAKSFVST 516


>gi|281206551|gb|EFA80737.1| hypothetical protein PPL_06323 [Polysphondylium pallidum PN500]
          Length = 926

 Score =  180 bits (457), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 144/561 (25%), Positives = 259/561 (46%), Gaps = 57/561 (10%)

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL 182
           AN++  KN   G+ + G +  ++  DL   LP G +G  +  +  D     +        
Sbjct: 157 ANRLLFKNFYTGLVVMGCLESISNMDLTFSLPFGAKGYVKFNEISDEFTKYQESVMRSKD 216

Query: 183 LPT--------------IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 228
           +P+              +F +GQ++   ++ L D+ K  G   +  +LR  ++  G +  
Sbjct: 217 IPSNFVKLDTIMNRIKGMFMIGQIMKVAIVGLTDNAKSFG---LHCTLRTDVVNVGSTTS 273

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNL-----AENSGID-------VK 275
           T +EGM +   VKS+ED GYI+ FG      GF+  +N       + +G         + 
Sbjct: 274 TFKEGMTIFGEVKSVEDRGYIVSFGKDVEAKGFIEHSNTRYFWPVQGAGTQWNENECRLA 333

Query: 276 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
            G  L+ V+  ID       L++    +++    D   +++D +  GMMV T++  I  N
Sbjct: 334 QGQPLEAVITEIDSATNTFKLNASHPLINRSTVTDSAVVTMDSIKAGMMVDTKIAKIYRN 393

Query: 336 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
           G+ ++FL YF G +   HL+         ++Y+    + ARIL+VD   + +GL+   ++
Sbjct: 394 GISVTFLDYFAGDIFFTHLEKPL------SEYSVSMNLKARILYVDQIDKKIGLSALSHV 447

Query: 396 LHNRAPP-SHVKVGDIYDQS--KVVRVDRGLGLLLDIPSTPVSTP--AYVTISDVAEEEV 450
           L  R  P   +K G I+  S  ++ RVD  L + + I S+  S P   Y+    + + +V
Sbjct: 448 LGLRPYPFGQIKPGAIFKSSEIQITRVD-PLEMYVSINSSQNSQPLKGYIHHKKIPDVKV 506

Query: 451 RKLEKKYK-----EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG- 504
             L+  Y      +  C   RI+   H++ + T  L  S     V+ + ++ PGM++   
Sbjct: 507 DNLKSIYHPNGKFDKDC---RIIHVDHVDAMVTLTLSKSDLSKEVYNYYNLFPGMIINAV 563

Query: 505 -KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561
            K+I  DS    V+    +  + P  ++++  +  P KKFKVG  +  RVL    + KR+
Sbjct: 564 IKIIRPDSIE--VEVSPSIYGVVPKHNIADTILSDPSKKFKVGQAVRCRVLSCVPQYKRL 621

Query: 562 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG-CFVRFYNGVQGFAPRSELGL 620
            +T K +L+ S L I ++ A      I+HG+I+ I+ +   FV F++   G   +  L  
Sbjct: 622 MLTMKNSLINSTLPIFTNSANVNVGDISHGYISNIKDNSHIFVTFFDKCFGIVQKKHLSN 681

Query: 621 DPGCEPSSMYHVGQVVKCRIM 641
            P       + +GQVV  +++
Sbjct: 682 LPVTMIEDHFKIGQVVAAQVI 702



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 122/263 (46%), Gaps = 27/263 (10%)

Query: 1285 LYGRVHFTELKNICVSDPLSGYD-EGQFVK-CKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
            L G +H  ++ ++ V +  S Y   G+F K C+++ +        HV+  +  +L     
Sbjct: 492  LKGYIHHKKIPDVKVDNLKSIYHPNGKFDKDCRIIHVD-------HVDAMVTLTL----- 539

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
             + SDLS       K +    +L P MI+   +K +      + +S  +   V   N++D
Sbjct: 540  -SKSDLS-------KEVYNYYNLFPGMIINAVIKIIRPDSIEVEVSPSIYGVVPKHNIAD 591

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1462
              +  P K+F +G+ V  RVLS  P  KR+ +T+K S    ++     N +N++VGDI  
Sbjct: 592  TILSDPSKKFKVGQAVRCRVLSCVPQYKRLMLTMKNS-LINSTLPIFTNSANVNVGDISH 650

Query: 1463 GQIKRV-ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
            G I  + ++  +F+T  +    G+     LS   V  IE  ++ G+ V  ++  + + K 
Sbjct: 651  GYISNIKDNSHIFVTFFD-KCFGIVQKKHLSNLPVTMIEDHFKIGQVVAAQV--IGRNKF 707

Query: 1522 RISLGMKSSYFKNDADNLQMSSE 1544
             + L +  S  + + D  Q+  E
Sbjct: 708  SLDLSLVISNLEEEEDQPQVKDE 730



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 729
           G +++ V+ ++ P+++ V V    Y  G +P  ++AD +      K  +       ++L 
Sbjct: 557 GMIINAVIKIIRPDSIEVEVSPSIY--GVVPKHNIADTILSDPSKKFKVGQAVRC-RVLS 613

Query: 730 LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG-CFVRFLGRLTGF 788
              +   L+L+ K SLINS   + +++++++   + HGY+ NI +    FV F  +  G 
Sbjct: 614 CVPQYKRLMLTMKNSLINSTLPIFTNSANVNVGDISHGYISNIKDNSHIFVTFFDKCFGI 673

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
             +    +     +   + +GQ V + ++  N
Sbjct: 674 VQKKHLSNLPVTMIEDHFKIGQVVAAQVIGRN 705



 Score = 41.6 bits (96), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 24/149 (16%)

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V++ P +YG V    + +  +SDP   +  GQ V+C+VL      +    + L++++SL 
Sbjct: 574  VEVSPSIYGVVPKHNIADTILSDPSKKFKVGQAVRCRVLSCVPQYK---RLMLTMKNSLI 630

Query: 1339 GMS---STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG-CFIMLSRKLDAK 1394
              +    TNS++++            + D+S      GY+ N+      F+    K    
Sbjct: 631  NSTLPIFTNSANVN------------VGDIS-----HGYISNIKDNSHIFVTFFDKCFGI 673

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            V   +LS+  V   E  F IG++VA +V+
Sbjct: 674  VQKKHLSNLPVTMIEDHFKIGQVVAAQVI 702


>gi|164660947|ref|XP_001731596.1| hypothetical protein MGL_0864 [Malassezia globosa CBS 7966]
 gi|159105497|gb|EDP44382.1| hypothetical protein MGL_0864 [Malassezia globosa CBS 7966]
          Length = 278

 Score =  180 bits (457), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 97/242 (40%), Positives = 147/242 (60%), Gaps = 4/242 (1%)

Query: 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741
            M F L + +V+KAR +A RA+Q I+ REE EKLN+W+A  N+EN YG+P  E V  VF+ 
Sbjct: 1    MTFYLQLGNVDKARQVARRAIQVIHFREEQEKLNVWMALLNVENMYGSP--ETVEAVFKE 58

Query: 1742 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEG- 1800
            A QY D  +VH  +L +YE   +   A  L  + +KKF     +W+R  +  L+  +E  
Sbjct: 59   AAQYNDALEVHSRMLSIYEHGNKIDDAAALFPRAVKKFSFVPDMWIRWYEFCLRHDREDE 118

Query: 1801 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860
              A+V R+L SL R +H++ ++  A+ E+K G  +  R+MFE ++S YPKRTD+W  Y+D
Sbjct: 119  AHALVPRSLQSLDRKQHLRVLTAYALAEYKLGDVEHARTMFETLVSRYPKRTDIWWQYID 178

Query: 1861 QEIRLGDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
            QE+RL +    R L ER ++      K++K L +K+L  EK VG+E  ++ V  +A  +V
Sbjct: 179  QEVRLENAAGARSLMERCLAARKHTTKQVKSLLQKWLVIEKRVGDEAGVQRVLDRARAFV 238

Query: 1920 ES 1921
             S
Sbjct: 239  AS 240


>gi|328874880|gb|EGG23245.1| hypothetical protein DFA_05377 [Dictyostelium fasciculatum]
          Length = 822

 Score =  180 bits (456), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 146/558 (26%), Positives = 258/558 (46%), Gaps = 45/558 (8%)

Query: 122 YANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDN 181
           ++ ++   +I AGM L G    V +  +V+ LP G+RG  +  +  D          +DN
Sbjct: 180 FSTRLYSSDIYAGMVLLGAFEMVTDSFIVVSLPFGIRGYVKFNEISDEFTKWSNSVMKDN 239

Query: 182 L---------------LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLS 226
           +               + T+F  G L+   V+ + D KK    + +  +LR  ++ K  +
Sbjct: 240 IKYKSNFQKTDSILERIKTMFIKGHLLKVAVMGISDMKK----KGLLCTLRPEVINKESN 295

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNL-----AENSGIDVKP---- 276
           +    EGM +   V+S++D GYI+ FG      GFL   +         S +D       
Sbjct: 296 IGNFTEGMNIYGSVQSVQDKGYIISFGSGFEHKGFLKFEDTKFYWPTTTSNVDASTATET 355

Query: 277 ----GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
               G  L+  + +I  + K+V +S     VS+  TKD   I+   +  GM+V   + ++
Sbjct: 356 TLSVGQPLECNILTISESPKIVSVSVSHFLVSRATTKDSTAITAQSIKAGMLVEGTISAV 415

Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
            +NG+ + FL +F G +  FH+    P T    D+ + + + ARI+ VD   + + L+L 
Sbjct: 416 YDNGLQVRFLEFFAGDIHQFHVDR--PLT----DFQEGRTLKARIISVDHEKKRIHLSLL 469

Query: 393 PYLLHNRAPP-SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
            + L  R  P + +K+GDI+ +  +V+      +LL +P    S    +  +   E    
Sbjct: 470 SHCLGLRPFPFNTLKIGDIFHKDIIVKKVDTHEILLSLPD-EFSKVKGLLHNTQTENNKE 528

Query: 452 KLEKKYKEGSCVRV--RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
            L+ K+  GS + V  R+    +L+ + T   K       ++++ D++PG ++ G +  V
Sbjct: 529 SLKGKFNVGSELHVPCRVKHVDYLDAMVTLTTKKKEIGKTIYSYYDLQPGQILDGTIKFV 588

Query: 510 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567
                 ++    +  + P+ ++ E  I+KP ++F  G  L FR+L V  + KR+ +T K 
Sbjct: 589 RDDSIEIKITDNIFGVVPMHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLTLKP 648

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
           +LV S L ILSS A      I  G+I++IE     V F+  V G   RS++   P    S
Sbjct: 649 SLVHSTLPILSSKAACKVGEIAQGFISRIEDERIHVTFFGDVHGIVDRSQMSRTPITMIS 708

Query: 628 SMYHVGQVVKCRIMSSIP 645
             + +GQVV  + +   P
Sbjct: 709 EHFQIGQVVTTKTLQVNP 726



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
            LD M +     L+T     GK +    DL P  I+ G +K V      I ++  +   V 
Sbjct: 552  LDAMVT-----LTTKKKEIGKTIYSYYDLQPGQILDGTIKFVRDDSIEIKITDNIFGVVP 606

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1456
            + NL +  +  P + F  G+ +  R+L V P  KR+ +TLK S    ++   +++ +   
Sbjct: 607  MHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLTLKPSLVH-STLPILSSKAACK 665

Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
            VG+I  G I R+E   + +T    ++ G+   S++S   +  I   ++ G+ V  K L+V
Sbjct: 666  VGEIAQGFISRIEDERIHVTFFG-DVHGIVDRSQMSRTPITMISEHFQIGQVVTTKTLQV 724

Query: 1517 DKEKRRISLGMKSSYFKNDADNLQ 1540
            + +   ++L + ++ ++   +++Q
Sbjct: 725  NPKGLFLTLIIDNADYQQYLNSIQ 748



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 112/482 (23%), Positives = 199/482 (41%), Gaps = 75/482 (15%)

Query: 1081 LKFGIGFHGRIHITEVNDDKSNVVENLF-------SNFKIGQTVTARI-----------I 1122
            L FGI   G +   E++D+ +    ++        SNF+   ++  RI           +
Sbjct: 211  LPFGI--RGYVKFNEISDEFTKWSNSVMKDNIKYKSNFQKTDSILERIKTMFIKGHLLKV 268

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTV-SEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
            A     DMKK  L   +++P ++   S IG+   F E     G  + G V  V ++  ++
Sbjct: 269  AVMGISDMKKKGLL-CTLRPEVINKESNIGN---FTE-----GMNIYGSVQSVQDKGYII 319

Query: 1182 TISRHLKAQLFIL---DSAYEPSELQEF------QRRFHIGKAVTGHVLSINKEKKLLRL 1232
            +     + + F+       Y P+           +    +G+ +  ++L+I++  K++ +
Sbjct: 320  SFGSGFEHKGFLKFEDTKFYWPTTTSNVDASTATETTLSVGQPLECNILTISESPKIVSV 379

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT 1292
             +  F   +S  T   S       I  G +V G IS +     GL V+      G +H  
Sbjct: 380  SVSHFL--VSRATTKDSTAITAQSIKAGMLVEGTISAVYDN--GLQVRFLEFFAGDIH-- 433

Query: 1293 ELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV 1352
                  V  PL+ + EG+ +K +++ +    +    + LSL S   G+     + L    
Sbjct: 434  ---QFHVDRPLTDFQEGRTLKARIISVDHEKK---RIHLSLLSHCLGLRPFPFNTL---- 483

Query: 1353 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD-AKVLLSNL-SDGYVESPEK 1410
                    KI D+    I+   VK V +    + L  +    K LL N  ++   ES + 
Sbjct: 484  --------KIGDIFHKDII---VKKVDTHEILLSLPDEFSKVKGLLHNTQTENNKESLKG 532

Query: 1411 EFPIGK--LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1468
            +F +G    V  RV  V+ L   V +T K    +      I +  +L  G I+ G IK V
Sbjct: 533  KFNVGSELHVPCRVKHVDYLDAMVTLTTK----KKEIGKTIYSYYDLQPGQILDGTIKFV 588

Query: 1469 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
                + I I + N+ G+  +  L E  +      + AG+ ++ +ILKV  EK+R+ L +K
Sbjct: 589  RDDSIEIKITD-NIFGVVPMHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLTLK 647

Query: 1529 SS 1530
             S
Sbjct: 648  PS 649



 Score = 44.3 bits (103), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 157/390 (40%), Gaps = 51/390 (13%)

Query: 322 GMMVSTRVQSILENGVMLSFLTYF--TGTVDIFHLQNTFPTTNWKNDYNQH--------K 371
           GM +   VQS+ + G ++SF + F   G +     +  +PTT    D +          +
Sbjct: 302 GMNIYGSVQSVQDKGYIISFGSGFEHKGFLKFEDTKFYWPTTTSNVDASTATETTLSVGQ 361

Query: 372 KVNARILFVDPTSRAVGLTLNPYLLHNRAP--------PSHVKVGDIYDQSKVVRVDRGL 423
            +   IL +  + + V ++++ +L+ +RA            +K G + + +     D GL
Sbjct: 362 PLECNILTISESPKIVSVSVSHFLV-SRATTKDSTAITAQSIKAGMLVEGTISAVYDNGL 420

Query: 424 GL-LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 482
            +  L+  +            D+ +  V +    ++EG  ++ RI+   H +      L 
Sbjct: 421 QVRFLEFFA-----------GDIHQFHVDRPLTDFQEGRTLKARIISVDHEKKRIHLSLL 469

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIA--VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
           +       F  + +K G +    +I   VD+   ++  P     +  L H ++ E  K  
Sbjct: 470 SHCLGLRPFPFNTLKIGDIFHKDIIVKKVDTHEILLSLPDEFSKVKGLLHNTQTENNKES 529

Query: 541 --KKFKVGAEL--VFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
              KF VG+EL    RV  V      +T+T KK   K     + SY +     I  G I 
Sbjct: 530 LKGKFNVGSELHVPCRVKHVDYLDAMVTLTTKK---KEIGKTIYSYYDLQPGQILDGTIK 586

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            +      ++  + + G  P   LG     +P   ++ GQ ++ RI+  +P  +R+ L+ 
Sbjct: 587 FVRDDSIEIKITDNIFGVVPMHNLGETMILKPRERFNAGQSLRFRILKVVPEKKRLVLT- 645

Query: 655 MMKPTRV-------SEDDLVKLGSLVSGVV 677
            +KP+ V       S     K+G +  G +
Sbjct: 646 -LKPSLVHSTLPILSSKAACKVGEIAQGFI 674



 Score = 43.9 bits (102), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 153/368 (41%), Gaps = 43/368 (11%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +A+  +    T   +K GM+V+G + AV   G  V+F            + +F + +P  
Sbjct: 388 RATTKDSTAITAQSIKAGMLVEGTISAVYDNGLQVRFLEFFAG-----DIHQFHVDRPLT 442

Query: 542 KFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL--ITHGWIT--K 595
            F+ G  L  R++ V  + KRI ++     + S    L  +   T ++  I H  I   K
Sbjct: 443 DFQEGRTLKARIISVDHEKKRIHLS-----LLSHCLGLRPFPFNTLKIGDIFHKDIIVKK 497

Query: 596 IEKHGCFVRF---YNGVQGFAPRSELGLDPGCEPSSMYHVGQV--VKCRIMSSIPASRRI 650
           ++ H   +     ++ V+G    ++   +        ++VG    V CR+         +
Sbjct: 498 VDTHEILLSLPDEFSKVKGLLHNTQTENNKESLKGK-FNVGSELHVPCRVKHVDYLDAMV 556

Query: 651 NLSFMMK---PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
            L+   K    T  S  DL + G ++ G +  V  +++ + +    +  G +P  +L + 
Sbjct: 557 TLTTKKKEIGKTIYSYYDL-QPGQILDGTIKFVRDDSIEIKITDNIF--GVVPMHNLGET 613

Query: 708 LEHATVMKSVIKPGYEFD-------QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH 760
           +        ++KP   F+       ++L +  E   L+L+ K SL++S   + S  +   
Sbjct: 614 M--------ILKPRERFNAGQSLRFRILKVVPEKKRLVLTLKPSLVHSTLPILSSKAACK 665

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
              +  G++  I +    V F G + G   RS+        +S+ + +GQ V +  L VN
Sbjct: 666 VGEIAQGFISRIEDERIHVTFFGDVHGIVDRSQMSRTPITMISEHFQIGQVVTTKTLQVN 725

Query: 821 SETGRITL 828
            +   +TL
Sbjct: 726 PKGLFLTL 733


>gi|193582568|ref|XP_001948922.1| PREDICTED: protein RRP5 homolog [Acyrthosiphon pisum]
          Length = 346

 Score =  180 bits (456), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 170/292 (58%), Gaps = 5/292 (1%)

Query: 1629 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1688
            N    +KK++E R +++  AE   +E+D P  PD +ERL+  +P SSF+W+KYMAF L  
Sbjct: 52   NQWREEKKQREIRNRKLE-AELIQIERD-PLNPDHYERLLLDNPGSSFIWMKYMAFYLHT 109

Query: 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748
             ++E AR+ A+RAL TI+ REE EKLN+W A    E  YGN  +E+  +    AL+  D 
Sbjct: 110  RNLETARATAKRALTTIDAREEIEKLNVWTALLIAEELYGN--KESFKQTMNEALRSNDE 167

Query: 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR-RVQRLLKQQQEGVQAVVQR 1807
              V++ +L ++E +   K  D+   K+I KF  S   +LR  +      + +  + ++Q+
Sbjct: 168  YMVYIKILEIFEESNVLKGLDKFTSKIITKFSDSLDAYLRCAIMYFRLNKSDQARLILQK 227

Query: 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1867
            A+ +LP   H+  IS+ A+LE   G  +  +++FE +L+ YP R ++ S+Y+D  ++   
Sbjct: 228  AISNLPTKSHVIMISKFALLENHVGSKEEAQTLFEHVLTCYPSRINVLSLYVDMLVKSNK 287

Query: 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
            +DL R   ERA + +L P+KM  LF K+L+ EK  G  E ++ VK     YV
Sbjct: 288  IDLARHALERATTQTLAPRKMNSLFNKWLKLEKKHGTSESVDKVKICMNNYV 339


>gi|146085140|ref|XP_001465188.1| rRNA biogenesis protein-like protein [Leishmania infantum JPCM5]
 gi|134069285|emb|CAM67435.1| rRNA biogenesis protein-like protein [Leishmania infantum JPCM5]
          Length = 733

 Score =  180 bits (456), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/294 (37%), Positives = 161/294 (54%), Gaps = 29/294 (9%)

Query: 1648 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1707
            A ER +E   P +P+EF+RL+ ++PNSS+VW +YMA+ + +   E AR +AE+AL TI +
Sbjct: 438  AYERGMETAVPTSPEEFQRLLLANPNSSYVWTQYMAYHVGLQQYEAARQVAEKALSTIGV 497

Query: 1708 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1767
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 498  REQEELLNVWVAYLNIENLYGT--EESLSAVFRRAQQR------QLNQLVLFERLADIYA 549

Query: 1768 ADE-------LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRHK 1816
            A         L   M  KF+   + W R    L+ Q   G +  ++R L      L R  
Sbjct: 550  ASRKPNQLLALCRAMTGKFRTERRTWERLGIVLVDQ---GKRDQLKRTLKDMGDVLKRDD 606

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVD 1869
                I   AI E+K G  + GR++FEG+L + PKR+D+WSIY DQE+ L           
Sbjct: 607  ATLAIVHIAIHEYKQGSPENGRALFEGLLRKVPKRSDVWSIYTDQEMGLLNRKDPTASTL 666

Query: 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
             +R +F+R ++++   K M+ +  ++L +EK  G    +E VK+ A  YVES +
Sbjct: 667  QVRQIFQRTVAMNFSAKVMQQVLTRFLSFEKLHGTPADVESVKRFARTYVESKI 720


>gi|398014441|ref|XP_003860411.1| rRNA biogenesis protein-like protein [Leishmania donovani]
 gi|322498632|emb|CBZ33704.1| rRNA biogenesis protein-like protein [Leishmania donovani]
          Length = 737

 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/294 (37%), Positives = 161/294 (54%), Gaps = 29/294 (9%)

Query: 1648 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1707
            A ER +E   P +P+EF+RL+ ++PNSS+VW +YMA+ + +   E AR +AE+AL TI +
Sbjct: 442  AYERGMETAVPTSPEEFQRLLLANPNSSYVWTQYMAYHVGLQQYEAARQVAEKALSTIGV 501

Query: 1708 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1767
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 502  REQEELLNVWVAYLNIENLYGT--EESLSAVFRRAQQR------QLNQLVLFERLADIYA 553

Query: 1768 ADE-------LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRHK 1816
            A         L   M  KF+   + W R    L+ Q   G +  ++R L      L R  
Sbjct: 554  ASRKPNQLLALCRAMTGKFRTERRTWERLGIVLVDQ---GKRDQLKRTLKDMGDVLKRDD 610

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVD 1869
                I   AI E+K G  + GR++FEG+L + PKR+D+WSIY DQE+ L           
Sbjct: 611  ATLAIVHIAIHEYKQGSPENGRALFEGLLRKVPKRSDVWSIYTDQEMGLLNRKDPTASTL 670

Query: 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
             +R +F+R ++++   K M+ +  ++L +EK  G    +E VK+ A  YVES +
Sbjct: 671  QVRQIFQRTVAMNFSAKVMQQVLTRFLSFEKLHGTPADVESVKRFARTYVESKI 724


>gi|389603784|ref|XP_003723037.1| rRNA biogenesis protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|322504779|emb|CBZ14565.1| rRNA biogenesis protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 742

 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 163/294 (55%), Gaps = 29/294 (9%)

Query: 1648 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1707
            A ER +E   P +P+EF+RL+ ++PNSS++W +YMA+ + +   E AR +AE+AL TI +
Sbjct: 446  AYERGIETAVPTSPEEFQRLLLANPNSSYMWTQYMAYHVGLQQYETARQVAEKALSTIGV 505

Query: 1708 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1767
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 506  REQEELLNVWVAYLNVENLYGT--EESLSAVFRRAQQR------QLNQLALFERLADIYT 557

Query: 1768 ADE-------LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRHK 1816
            A         L   M  KF+   + W R    L+ Q   G +  ++R L      L R  
Sbjct: 558  ASRKPNQLLALCRAMTGKFRTERRAWERLGIVLIDQ---GKRDQLKRTLKDMGNMLKRDD 614

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVD 1869
                I   AI E+K+G  + GR++FEG+L + PKR+D+WS Y DQE+ L       G   
Sbjct: 615  ATLAIVHIAIHEYKHGNPENGRALFEGLLRKVPKRSDVWSTYTDQEMGLLIRKDPTGSTL 674

Query: 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
             +R +F+RA++++   K M+ +  ++L +EK  G    +E VK+ A  YVE+ +
Sbjct: 675  QVRQIFQRAVAMNFSAKVMQQVLTRFLSFEKLHGTLTDVEAVKKCARTYVEAKI 728


>gi|183237274|ref|XP_001914593.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169799229|gb|EDS88631.1| hypothetical protein EHI_117370 [Entamoeba histolytica HM-1:IMSS]
          Length = 407

 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 157/259 (60%), Gaps = 3/259 (1%)

Query: 1662 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1721
            DE ++ V   P++S  WIK M   +   ++++AR + +  +++IN R+  EKLNIW A  
Sbjct: 148  DECQKGVEKDPDNSIEWIKLMQCFIQRKEIDEARKVGKTGIESINFRKLEEKLNIWKALM 207

Query: 1722 NLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1781
             LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +  +++   + KK K 
Sbjct: 208  QLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEVEEEEKIFRTLFKKVKG 265

Query: 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840
            SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+GRSM
Sbjct: 266  SCKVYKKYCNFLMRNNREEEIKNTLSKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSM 325

Query: 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900
            FE IL+  PKR D+W+IY+D E  +GDV +IR +FER +   L  K MK    KYLE+E+
Sbjct: 326  FEDILTNNPKRHDVWNIYIDMEKEVGDVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFER 385

Query: 1901 SVGEEERIEYVKQKAMEYV 1919
              G+E R E+V+  A  +V
Sbjct: 386  KYGDESRQEHVRDIAKSFV 404


>gi|444517556|gb|ELV11659.1| Protein RRP5 like protein [Tupaia chinensis]
          Length = 202

 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/196 (46%), Positives = 133/196 (67%), Gaps = 3/196 (1%)

Query: 1727 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1786
            YG+P  E++ K F+RA+QY +P KV L L  +Y ++E+ + A +L  +M+K+F+    VW
Sbjct: 2    YGSP--ESLTKAFERAVQYNEPLKVFLHLADIYTKSEKFQEAGDLYNRMLKRFRQEKAVW 59

Query: 1787 LRRVQRLLKQQQEGV-QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1845
            ++    LL+Q Q G    V+QRAL  LP  +H+  IS+ A LEF+ G  +R +++FE  L
Sbjct: 60   IKYGAFLLRQSQAGASHRVLQRALECLPSKEHVDVISKFAQLEFQLGDPERAKAIFENTL 119

Query: 1846 SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1905
            S YPKRTD+WS+Y+D  I+ G    +R +FER I LSL PK+MKF FK+YL+YEK  G E
Sbjct: 120  STYPKRTDVWSVYIDMTIKYGRQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTE 179

Query: 1906 ERIEYVKQKAMEYVES 1921
            + ++ VK KA+EYVE+
Sbjct: 180  KDVQAVKAKALEYVEA 195


>gi|239793504|dbj|BAH72864.1| ACYPI004236 [Acyrthosiphon pisum]
          Length = 346

 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 170/292 (58%), Gaps = 5/292 (1%)

Query: 1629 NNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM 1688
            N    +KK++E R +++  AE   +E+D P  PD +ERL+  +P SSF+W+KYMAF L  
Sbjct: 52   NQWREEKKQREIRNRKLE-AELIQIERD-PLNPDHYERLLLDNPGSSFIWMKYMAFYLHT 109

Query: 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748
             ++E AR+ A+RAL TI+ REE EKLN+W A    E  YGN  +E+  +    AL+  D 
Sbjct: 110  RNLETARATAKRALTTIDAREEIEKLNVWTALLIAEELYGN--KESFKQTMNEALRSNDE 167

Query: 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR-RVQRLLKQQQEGVQAVVQR 1807
              V++ +L ++E +   K  D+   K+I KF  S   +LR  +      + +  + ++Q+
Sbjct: 168  YMVYIKILEIFEESNVLKGLDKFTSKIITKFSDSLDAYLRCAIMYFRLNKSDQARLILQK 227

Query: 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1867
            A+ +LP   H+  IS+ A+LE   G  +  +++FE +L+ YP R ++ S+Y+D  ++   
Sbjct: 228  AISNLPTKSHVIMISKFALLENHVGSKEEAQTLFEHVLTCYPSRINVLSLYVDMLVKSNK 287

Query: 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
            +DL R   ERA + +L P+KM  LF K+L+ EK  G  E ++ VK     YV
Sbjct: 288  IDLARHALERATTQTLAPRKMNSLFNKWLKLEKKHGTFESVDKVKICMNNYV 339


>gi|195389266|ref|XP_002053298.1| GJ23416 [Drosophila virilis]
 gi|194151384|gb|EDW66818.1| GJ23416 [Drosophila virilis]
          Length = 1397

 Score =  177 bits (450), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/295 (37%), Positives = 165/295 (55%), Gaps = 11/295 (3%)

Query: 1633 AKKKEKEE--REQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA 1689
            AK+K K E   EQ +R  EER  + +  P T D+FERLV + PNSS  WI+YM+F+LS  
Sbjct: 1102 AKEKAKAEVKEEQRLREIEERNADPNQRPETIDQFERLVLAEPNSSKSWIQYMSFLLSNT 1161

Query: 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1749
            +V+KAR IA RA++TI  RE  E  NIW A  NLE  Y +   + V+K    AL + DP 
Sbjct: 1162 EVDKAREIARRAIKTIAFRETKELRNIWTALINLELSYNSSNFDDVLK---EALSHNDPL 1218

Query: 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR---LLKQQQEGVQAVVQ 1806
            + +L L+ + +     +     L  + +KF+   +VW  RV           + VQ  +Q
Sbjct: 1219 ETYLNLVEVLKSHNLRERLVSTLNLITRKFRTEPQVW--RVTADAYFWLGMADRVQPTLQ 1276

Query: 1807 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866
            RAL  LP+++HI  I   A L  +N      +++ + I++ YPKR D+W +Y+D  I+  
Sbjct: 1277 RALSVLPKNQHINCIVAFAKLYAQNDDNAMAQTLLDDIVTSYPKRIDIWVLYVDMLIKSE 1336

Query: 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
             ++  R + ERA+   L P KM  ++KKYL++E   G E     VKQ A +YV+S
Sbjct: 1337 LIESARNVLERAVLQKLQPDKMLVIYKKYLDFEMKHGTEANAARVKQLAEQYVQS 1391



 Score =  112 bits (281), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 146/613 (23%), Positives = 264/613 (43%), Gaps = 70/613 (11%)

Query: 54  FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
           FPRGG  +L     +   +  +  F A +R + K  K K+K+ +    E  D L +    
Sbjct: 8   FPRGGIANLQANAEN---SPSNIVFGASQRKIKKGPKPKEKQID---GEHSDQLQAF--- 58

Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDP---I 170
                    A  +T   +   M + GVV   +   L I LPG +   A  AD  D    +
Sbjct: 59  --------SAETLTYDTLRDRMLVMGVVKAADATSLQIALPGRMTARALVADISDAYARV 110

Query: 171 LDNEI--EANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRK---IWLSLRLSLLYKGL 225
             + +  + +E + L  +F VGQ+V    +     K EI +R    + LSL+ + +   L
Sbjct: 111 AQSYMAGDGSEYHDLTVLFSVGQIVYGRAI-----KTEIPERNRMSLLLSLKPAEVNSSL 165

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285
              ++++G + T  ++ I++HG ++  G+     F+P  + A+   I    G L+   V+
Sbjct: 166 HHASIKKGFIFTGAIEEIQEHGCVIETGIEGLQAFVPIADAAQQHHI----GQLIFLKVK 221

Query: 286 SIDR-----TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLS 340
            I       T + V L  D     K   K     ++D ++PG +V  +V   L+NG+  S
Sbjct: 222 QIQHSSAKSTCQCVRLDQD-----KLKIKSQNETNLDYILPGSIVKFKVIKHLKNGLEGS 276

Query: 341 FLT-YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN------- 392
            +   F G V+  HL     T     DY  +++  AR+L+V P ++ V LTLN       
Sbjct: 277 IMNESFRGYVNEHHLAEALHTP---PDYELNEEYLARVLYVMPLTKLVYLTLNLDINVTT 333

Query: 393 -PYLLHNRAPPSHVKVGDIYDQSKVVRVDR-GLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
               + +      +K G I ++++V+R    G+ LLL+     + +   +  +     + 
Sbjct: 334 EKTAMEDDEQQELLKKGSIVEKARVLRHGTGGIVLLLNHKHKGLISYGSIKSNHKGNYDQ 393

Query: 451 RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
             +  KY   S  +VR+LG+  +E L      A+     ++T  D++ G +V+ +++  +
Sbjct: 394 DVVLAKYSSKSKHKVRVLGYDVIESLYYCTDDANILNEKLYTLEDLQAGDIVQARIVKPE 453

Query: 511 S-FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKK 567
           S  G      G V  +    H++      P  +++VG  L  RVL +   R    ++++ 
Sbjct: 454 SKIGGYNVKIGKVNGIIEQLHLA------PNMRYEVGQRLRCRVLDICLDRKICYLSNRN 507

Query: 568 TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
             +   + +L+S   A    +  G + K E     V+F +G++G   +  L         
Sbjct: 508 EYLNKSVKLLTSLQSAQPGSLFTGTVVKCESSYVLVKFCSGIKGVLHKQRLNE----LIE 563

Query: 628 SMYHVGQVVKCRI 640
           S +  GQ  K RI
Sbjct: 564 STFFAGQTTKFRI 576


>gi|401421286|ref|XP_003875132.1| rRNA biogenesis protein-like protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
 gi|322491368|emb|CBZ26637.1| rRNA biogenesis protein-like protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 738

 Score =  176 bits (447), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 161/294 (54%), Gaps = 29/294 (9%)

Query: 1648 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1707
            A ER +E   P +P+EF+RL+ ++PNSS++W +YMA+ + +   E AR +AE+AL TI +
Sbjct: 442  AYERGMETAVPTSPEEFQRLLLANPNSSYIWTQYMAYHVGLQQYEAARQVAEKALSTIGV 501

Query: 1708 REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1767
            RE+ E LN+WVAY N+EN YG   EE++  VF+RA Q        L  L L+ER      
Sbjct: 502  REQEELLNVWVAYLNIENLYGT--EESLSAVFRRAQQR------QLNQLTLFERLADIYA 553

Query: 1768 ADE-------LLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS----LPRHK 1816
            A         L   M  KF+   + W R    L+ Q   G +  ++R L      L R  
Sbjct: 554  ASRKPNQLLALCRAMTGKFRTERRTWERLGIVLVDQ---GKRDQLKRTLKDMGDVLKRDD 610

Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-------GDVD 1869
                I   AI E+K+G  + GR++FEG+L + PKR+D+W+ Y DQE+ L           
Sbjct: 611  ATLAIVHIAIHEYKHGSPENGRALFEGLLRKVPKRSDVWATYTDQEMGLLNRKDPTASTL 670

Query: 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
             +R +F+R ++++   K M+ +  ++L +EK  G    +E VK+ A  YV+S +
Sbjct: 671  QVRQIFQRTVAMNFSAKVMQQVLTRFLSFEKLHGTPADVESVKKCARTYVDSKI 724


>gi|224011034|ref|XP_002294474.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969969|gb|EED88308.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 259

 Score =  175 bits (443), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/257 (41%), Positives = 157/257 (61%), Gaps = 14/257 (5%)

Query: 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1732
            NSS VWIKYMAF LS+AD++ AR++A RA + I  REE EKLN+W A   LE +YGN  +
Sbjct: 1    NSSEVWIKYMAFHLSLADIDSARTVANRAFERIVFREEGEKLNVWTALLTLELKYGN--D 58

Query: 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792
            +++     RA +  +PK+   + +G  +     K AD++  KM KKFK    VW+   Q 
Sbjct: 59   KSLQATVDRACKQNNPKQA--SSIGSNDLVTSTKRADDMFTKMCKKFKSKKTVWIAHFQY 116

Query: 1793 LLK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851
            LLK  + E   A+++R+L SLP +KH++ +S+ A +EF+ G A+RGR++F  +L ++PKR
Sbjct: 117  LLKGSRHEEAHALLKRSLQSLPNYKHVEVMSKFAQMEFELGSAERGRTIFNALLEKHPKR 176

Query: 1852 TDLWSIYLDQEIRLGDVDLIRGLF---------ERAISLSLPPKKMKFLFKKYLEYEKSV 1902
             DL  + +D+EI+ GD+   R LF         ER        K+MK LFKK+   E+  
Sbjct: 177  MDLLFVNIDKEIKSGDILKARALFDSVVNPVSNERKQKFKFSDKQMKSLFKKWYRMEEEH 236

Query: 1903 GEEERIEYVKQKAMEYV 1919
            G+EE  E VK++A  +V
Sbjct: 237  GDEESQERVKEEARTFV 253


>gi|296412695|ref|XP_002836057.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629859|emb|CAZ80214.1| unnamed protein product [Tuber melanosporum]
          Length = 1070

 Score =  174 bits (441), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 225/906 (24%), Positives = 387/906 (42%), Gaps = 117/906 (12%)

Query: 1   MAASSRKSQKKSSKDGPKFNKASKNQFKNSKKQINDAV--EAQDLALPPD---------- 48
           M +  ++ + + +  GP    A+K+Q K      N  +  EA   A  P+          
Sbjct: 1   MGSDLKRKRSQDADPGP----ANKSQTKKLPATANKRLKPEASAAASKPEPAKLSTFRSS 56

Query: 49  -DDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
            D+   F RGGG  LT  E  +I   A  DA FE  E    K  KKK ++ E K ++T  
Sbjct: 57  KDEEKSFSRGGGSVLTPLEFKQISIDAAKDALFET-ENAKAKWTKKKSRREEPKKDKTSK 115

Query: 106 DLGSLFGD--GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA 163
              S  G+  GI       A  ++ K +  G  + G V+++++ DL + LP  L G    
Sbjct: 116 KDESKKGEQKGIK------AEGLSYKRLLPGTLVLGCVSQISQTDLALSLPNNLTGFV-P 168

Query: 164 ADALDPILDNEIEA------------------------NEDNL-LPTIFHVGQLVSCIVL 198
             ++  +L+   EA                        +ED + L ++F +G  +   V+
Sbjct: 169 LTSISELLNKNFEALVRDSDDDEDEDVEENIETAKSESSEDGVDLKSMFQIGPYLRAYVV 228

Query: 199 ---QLDDDKKEIG----KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
              +  + K   G    K++I LSL   L   GL+   +  G  + A V S+EDHG +++
Sbjct: 229 SSSEPTNSKYSTGSKRFKKRIELSLDPVLTNNGLTTTELVVGCTVQASVTSVEDHGLVMN 288

Query: 252 FGLPS-FTGFLPRNNLAENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK 309
            G+ +   GFL    L +   + D K G ++      +    K+V LS     + +  TK
Sbjct: 289 LGIGNHLKGFLSSKELGKGRSVTDAKEGQVMLCTTIGLSSNGKIVKLSGG---LEQKPTK 345

Query: 310 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
             K I                     GV    +      +D FH    +   + ++ +  
Sbjct: 346 GGKAI---------------------GVAGKVMGLVDAKMDFFHASG-WEEKDIESKFKV 383

Query: 370 HKKVNARILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLG 424
            +K+ A ++      R + L++ P++L         P + + +  I + +K + ++  +G
Sbjct: 384 GEKIKAHVIATYSEPRKLALSILPHVLPFTQPIENEPTTILPIATIINTAKALNIEPKIG 443

Query: 425 LLLDIPSTPVSTPAYVTISDVAEE-EVRKLEKK---YKEGSCVRVRILGFRHLEGLATGI 480
           L LD+    V  P +V IS ++ + ++  L      Y+  S   VRI+G+  ++GL    
Sbjct: 444 LFLDVGVPGV--PGFVHISRISSDSKIEALSNDSGLYQTDSVHMVRIIGYNSMDGLYLVS 501

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKP 539
           ++    +       D+K G VVKG +  V   G  IV    G+  +    H+S+ ++  P
Sbjct: 502 MEQKVLDQSFLRVKDIKIGEVVKGTIDRVLHSGRVIVNLAEGITGIVDELHLSDVKLKHP 561

Query: 540 GKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
            KKF+ G E+  RVL      +++ +  KK +V S   I+SSY +      + G + KI 
Sbjct: 562 EKKFREGVEVKARVLLTDPPKRKVRLILKKAIVNSDAPIISSYKDTNSGTRSVGTLVKIL 621

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
            +G  V+F+  V GF P SE+      +P     VGQ V   ++S  PAS+++ +S    
Sbjct: 622 PNGAIVKFFLDVCGFLPVSEMREAYIQDPHEHSTVGQSVNVHVLSVDPASQKLRVS-CKD 680

Query: 658 PTRVSEDDLVKL-----GSLVSGVVDVVTPNAVVVYVIAKGYS--KGTIPTEHLADHLEH 710
           P    E   V L     G +VSG V   + + ++V +   G    +G + T  L D    
Sbjct: 681 PNLFGEAHKVTLAKLPPGDVVSGTVVEKSADDLIVEINGLGAEGIRGVLVTGQLTDGSRD 740

Query: 711 AT--VMKSVIKPGYEFDQLLVLDN--ESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSV 764
            +  V K  ++ G + D LLVL+   E  ++ LS K SL+ +A+   + S    ++   +
Sbjct: 741 KSLGVFKK-LRAGQKLDDLLVLEKHEERRSITLSMKPSLVKAAKGGSMISKFEDVNEGEI 799

Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
           V G+V N      FV F G + G   +       ++  +  Y   QS+   ++ ++    
Sbjct: 800 VRGWVRNTTLQSLFVGFAGGIVGVVYKKDRPAEVQSLPNFGYVKNQSITCRVVYIDPSER 859

Query: 825 RITLSL 830
           R  LSL
Sbjct: 860 RFRLSL 865



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 140/316 (44%), Gaps = 28/316 (8%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            I  G++V G I ++L   G ++V +   + G V    L ++ +  P   + EG  VK +V
Sbjct: 517  IKIGEVVKGTIDRVLHS-GRVIVNLAEGITGIVDELHLSDVKLKHPEKKFREGVEVKARV 575

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L      R    V L L+ ++              V++    +   +D +      G + 
Sbjct: 576  LLTDPPKR---KVRLILKKAI--------------VNSDAPIISSYKDTNSGTRSVGTLV 618

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             +   G  +     +   + +S + + Y++ P +   +G+ V   VLSV+P S+++ V+ 
Sbjct: 619  KILPNGAIVKFFLDVCGFLPVSEMREAYIQDPHEHSTVGQSVNVHVLSVDPASQKLRVSC 678

Query: 1437 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV---SELSE 1493
            K  D     ++    L+ L  GD+V G +    +  L + I      G+  V    +L++
Sbjct: 679  K--DPNLFGEAHKVTLAKLPPGDVVSGTVVEKSADDLIVEINGLGAEGIRGVLVTGQLTD 736

Query: 1494 DHVDNIETIY---RAGEKV-KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1549
               D    ++   RAG+K+  + +L+  +E+R I+L MK S  K       +S  E+ +E
Sbjct: 737  GSRDKSLGVFKKLRAGQKLDDLLVLEKHEERRSITLSMKPSLVKAAKGGSMISKFEDVNE 796

Query: 1550 AIEEVGSYNRSSLLEN 1565
              E V  + R++ L++
Sbjct: 797  G-EIVRGWVRNTTLQS 811



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 163/797 (20%), Positives = 294/797 (36%), Gaps = 153/797 (19%)

Query: 494  SDVKPGMVVKGKVIAVDSFGAIVQFPGG---------------------VKALCPLPHMS 532
            +D K G V+    I + S G IV+  GG                     V A     H S
Sbjct: 311  TDAKEGQVMLCTTIGLSSNGKIVKLSGGLEQKPTKGGKAIGVAGKVMGLVDAKMDFFHAS 370

Query: 533  EFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR------ 586
             +E      KFKVG ++   V+       T +  + L  S L  +  + +  +       
Sbjct: 371  GWEEKDIESKFKVGEKIKAHVIA------TYSEPRKLALSILPHVLPFTQPIENEPTTIL 424

Query: 587  ----LITHGWITKIE-KHGCFVRF-YNGVQGFAPRSELGLDPGCEP----SSMYHVGQVV 636
                +I       IE K G F+     GV GF   S +  D   E     S +Y    V 
Sbjct: 425  PIATIINTAKALNIEPKIGLFLDVGVPGVPGFVHISRISSDSKIEALSNDSGLYQTDSVH 484

Query: 637  KCRIM--SSIPA-------SRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVV 687
              RI+  +S+          + ++ SF+    RV +   +K+G +V G +D V  +  V+
Sbjct: 485  MVRIIGYNSMDGLYLVSMEQKVLDQSFL----RVKD---IKIGEVVKGTIDRVLHSGRVI 537

Query: 688  YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 745
              +A+G + G +   HL+D  L+H    +   + G E   ++L+ D     + L  K ++
Sbjct: 538  VNLAEGIT-GIVDELHLSDVKLKHP---EKKFREGVEVKARVLLTDPPKRKVRLILKKAI 593

Query: 746  INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
            +NS   + S     +  +   G +  I+  G  V+F   + GF P S+  +    D  + 
Sbjct: 594  VNSDAPIISSYKDTNSGTRSVGTLVKILPNGAIVKFFLDVCGFLPVSEMREAYIQDPHEH 653

Query: 806  YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
              VGQSV  ++L V+  + ++ +S K          F + H +   K+            
Sbjct: 654  STVGQSVNVHVLSVDPASQKLRVSCKDPNL------FGEAHKVTLAKLPP---------- 697

Query: 866  LKWVEGFIIGSVIEGKVHE--SNDFGVVVSFEEHSDVYGFITHHQLA-GATVESGSVIQA 922
                     G V+ G V E  ++D  V ++      + G +   QL  G+  +S  V + 
Sbjct: 698  ---------GDVVSGTVVEKSADDLIVEINGLGAEGIRGVLVTGQLTDGSRDKSLGVFKK 748

Query: 923  ----------AILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
                       +L+  +  R + LS+K   +          +A K        +D+   +
Sbjct: 749  LRAGQKLDDLLVLEKHEERRSITLSMKPSLV----------KAAKGGSMISKFEDVNEGE 798

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSS 1032
             V   V       L +        + Y        Q  P   ++  QS+   V+ +  S 
Sbjct: 799  IVRGWVRNTTLQSLFVGFAGGIVGVVYKKDRPAEVQSLPNFGYVKNQSITCRVVYIDPSE 858

Query: 1033 TAGRLLL--------LLKAISETETSSSK--------RAKKKSSYDVGSLVQAEITEIKP 1076
               RL L           A++ T   + +        R K    Y  G L +A++  ++ 
Sbjct: 859  RRFRLSLNSVKSGEGEAPAVANTAGDTERLTVNPVDARFKHIDDYTSGRLTKAKVVSVQE 918

Query: 1077 LELRLKFGIGFHGRIHITEVND------DKSNVVENLFSNFKIGQTVTA-------RIIA 1123
             +L +K      GRI ++ V +      DK + + +      +G  +         R +A
Sbjct: 919  TQLNVKLADNVQGRIDVSLVFETWDAIKDKKSPLASFGKGSVLGVKIIGIHDARNHRFLA 978

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC-----DVSIGQRVTGYVYKVDNEW 1178
             +++    K+ ++ELS +P  +    I      E C     D++       ++  +  E 
Sbjct: 979  ITHQKSNTKTPIFELSARPGHIKEEGI------ERCITKLEDITPNSTWVAFLNNISEEC 1032

Query: 1179 ALLTISRHLKAQLFILD 1195
            A   I   ++ ++ ILD
Sbjct: 1033 ARANILPGIRGRIRILD 1049



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
            + ++ +G++V G I RV   G  I      + G+     LS+  + + E  +R G +VK 
Sbjct: 514  VKDIKIGEVVKGTIDRVLHSGRVIVNLAEGITGIVDELHLSDVKLKHPEKKFREGVEVKA 573

Query: 1512 KILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSV 1568
            ++L  D  KR++ L +K +   +DA    +SS ++++     VG+  +  +L N ++
Sbjct: 574  RVLLTDPPKRKVRLILKKAIVNSDAP--IISSYKDTNSGTRSVGTLVK--ILPNGAI 626


>gi|195035980|ref|XP_001989449.1| GH18799 [Drosophila grimshawi]
 gi|193893645|gb|EDV92511.1| GH18799 [Drosophila grimshawi]
          Length = 1396

 Score =  173 bits (439), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 161/289 (55%), Gaps = 21/289 (7%)

Query: 1643 QEIRAAEERLLE-KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERA 1701
            Q +R  EER  +    P T D+FERLV + PN+S  WI+YM+F+LS  ++ KAR IA RA
Sbjct: 1113 QRLRKIEERNADPSQQPETIDQFERLVIAEPNNSKSWIQYMSFLLSNTEIVKAREIARRA 1172

Query: 1702 LQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1761
            ++TI  RE  E  NIW++  NLE  Y +   + V+K    AL + DP + +L L+ + + 
Sbjct: 1173 IKTIAFRETKELRNIWISLINLELSYNSSNFDDVLK---EALSHNDPLETYLNLVDVLKS 1229

Query: 1762 TEQNKLADELLYKMIKKFKHSCKVW---------LRRVQRLLKQQQEGVQAVVQRALLSL 1812
                +     L  +++KF+   +VW         L  V R        VQ  +QRAL  L
Sbjct: 1230 HNLKERLINTLNIIMRKFRTELQVWKVSADAYFWLGLVDR--------VQPTLQRALNVL 1281

Query: 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872
            P+++HI  I   A L  ++      +++ +GI++ YPKR D+W +Y+D  I+ G ++  R
Sbjct: 1282 PKNQHINCIVAFAKLYAQHEDNAMAQTLLDGIVTSYPKRIDIWVLYVDMLIKSGLIESAR 1341

Query: 1873 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
             + ERA+   L P KM  ++KKYL++E+  G E     VKQ A +YV+S
Sbjct: 1342 NVLERAVLQKLQPDKMLVIYKKYLDFEEKHGTEGNAARVKQLAEQYVQS 1390



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 119/537 (22%), Positives = 233/537 (43%), Gaps = 42/537 (7%)

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARA-----ADALDPILDNEIEA 177
           A  +T   +   M + GVV       L I LPG  R +ARA     +DA   +  + +  
Sbjct: 60  AESLTFDTLQEHMLVMGVVKSATATSLQIALPG--RMMARALVADISDAYARVAQSYMGG 117

Query: 178 NEDNL--LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMV 235
           ++     L  +F  G++V    ++   D++E     + L+L+ + +   L   ++++G +
Sbjct: 118 DDSEYHDLSELFKEGRIVYGRAMK--TDRQEGKSSTLLLTLKPADVNSSLRHGSIKKGFI 175

Query: 236 LTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKVV 294
            T  ++ I++HG ++  G+     F+P  ++A+   I     L ++ +  + +R T + +
Sbjct: 176 FTGAIEEIQEHGCVIETGIQGLQAFMPNEDVAQQHHIGELIFLKVKQIQHNAERSTCQCI 235

Query: 295 YLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIFH 353
            L  D     K   K     ++D ++PG +V  +V   L+NG+  S +   F G V+  +
Sbjct: 236 QLEQD-----KLKIKSQNETNLDYILPGSIVKFKVSKQLKNGLEGSIMNESFRGYVNEHY 290

Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL-----LHNRAPPSHVKVG 408
           L     T     DY  +++  AR+L+V P ++ V LT N  +               K G
Sbjct: 291 LSEALYTP---QDYEVNEEYLARVLYVMPLTKLVYLTFNLNIGVTAEQEAADEEELPKKG 347

Query: 409 DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK--LEKKYKEGSCVRVR 466
            I ++++V+R   G G++L +        +Y +I    +    +  +  KY   S   VR
Sbjct: 348 TIVEKARVLRHGTG-GIILLLNRKHKGLISYSSIKSNFKGNYDQDVVLSKYSNKSKHTVR 406

Query: 467 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS-FGAIVQFPGGVKAL 525
           +LG+  +E L       +     ++   D+  G +V  +++  DS  G      G V  +
Sbjct: 407 VLGYDVIESLYYCTDNPNVVNEKLYMLDDLLAGDIVSARIVKPDSKIGGYCVKIGNVNGI 466

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEA 583
                ++      P   +++G  L  RVL + ++R    ++++   +     +L++   A
Sbjct: 467 IEQMQLA------PNVHYEIGQCLRCRVLDICTERKICYLSNRSEYLSKSAKLLTTLQSA 520

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
               +  G + K E     V+F NG++G   +  L    G   ++ +  GQ  K RI
Sbjct: 521 HSGNLFTGTVVKCEPTYILVKFCNGLKGVLHKQRLN---GLMEATFFE-GQTTKFRI 573


>gi|82793865|ref|XP_728209.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
 gi|23484449|gb|EAA19774.1| rrp5 protein homolog [Plasmodium yoelii yoelii]
          Length = 437

 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 160/286 (55%), Gaps = 29/286 (10%)

Query: 1661 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY 1720
            P ++E+L+ S  N S +WI Y+ + L   ++++AR++AERAL+TI+I    EKLNI++ Y
Sbjct: 151  PYDYEKLLVSEKNKSTIWISYIVYYLEKGNIQEARNVAERALKTIDIHLIEEKLNIYLCY 210

Query: 1721 FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1780
             N+E  YG+   E    +F+RAL   + K ++L  + + +  ++     EL  + IKKFK
Sbjct: 211  INMECAYGDNLNE----IFKRALLVNNEKSIYLHTMNILKMNKKYNELKELCEEAIKKFK 266

Query: 1781 HSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1838
            +S K+W R ++ L      +E    ++ ++L +LP+ KH+  I   A  E+K    +RG+
Sbjct: 267  YSKKIWTRYLELLHNTLNDEEYAHNILLKSLHALPKRKHLNIIINAARFEYKYSNIERGK 326

Query: 1839 SMFEGILSEYPKRTDLWSIYLDQEIR-----------------------LGDVDLIRGLF 1875
            + FE ++ EYPKR+D+W  YLD  I                        L ++  IR +F
Sbjct: 327  NYFEKLIQEYPKRSDIWFTYLDIHINSLTKGKKNENDDENKKKKIKKLTLNELQFIRNIF 386

Query: 1876 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            ER +S+    + MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 387  ERFLSIKFKTRVMKMIFTKWLLFEKNHGSVNTQKMVQKKAYDYVES 432


>gi|385305108|gb|EIF49102.1| part of small ribosomal subunit processosome (contains u3 snorna)
           [Dekkera bruxellensis AWRI1499]
          Length = 1300

 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 215/869 (24%), Positives = 368/869 (42%), Gaps = 125/869 (14%)

Query: 54  FPRGGGHSLTQRERDEI--HAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLF 111
           FPRGG   LT  E  +I   A+ D  FE      HK+++K KK   +   +TVD+     
Sbjct: 33  FPRGGESFLTPLEIKKISNQAKSDVLFEQA----HKESRKSKKNGGKSHPKTVDEEXQ-- 86

Query: 112 GDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG----------LA 161
                 +  +   +++ K +  G  + G VA+V   +L +     L+G          L+
Sbjct: 87  ------EKXQKVEELSFKILQPGSYVLGKVAKVTNIELTLSXXDNLQGYVPITNVSKELS 140

Query: 162 RAADALDP----------------ILDNEIEANEDNL--------------------LPT 185
           +  DA +                   + E E N D                      L T
Sbjct: 141 KQLDAYEEQEGSEDEDXDEDMSSDDDEGEAEDNGDEQDRITIASKAKSXSSSAKFPNLST 200

Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
            F VGQ +   V++   +  + GK++  LS     + KGL  +  +    + A ++S+ED
Sbjct: 201 RFSVGQYLRAYVVE---NTSDTGKKRFELSXEPENVNKGLKKDDFEPNTYVQASIRSVED 257

Query: 246 HGYILHFGLPSFTGFLPRNNLAENSGIDVKP----GLLLQGVVRSIDRTRKVVYLSSD-- 299
           HG IL  G+    GFL + + A   GID+       + L  V +   RT ++   S++  
Sbjct: 258 HGAILDLGMHDMNGFLSKKD-ATKGGIDLASLEVGSVHLLTVKKRSGRTLQLTIPSNNVE 316

Query: 300 ----PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
               P +VS          +ID ++PG +V   +  ++  G+++       G++ + H+ 
Sbjct: 317 KEQIPSSVS----------TIDAILPGSLVDCTITDVVSZGLIVKAFGLANGSISLTHI- 365

Query: 356 NTFPTTNWKNDYNQHKKVNARIL--FVDPTSRAVGLTLNPYLLH----------NRAPPS 403
             + ++  ++ +   + V AR+   ++    R V L+L P++++            AP  
Sbjct: 366 GKYNSSELEDTFKVGESVRARVYASYIQDGLRNVQLSLLPHIVNLKKLAYDPKDESAPLV 425

Query: 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPS-TPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
              +G I+D+  +   D    L  D+ S T V       +S  A+     L+  +K GS 
Sbjct: 426 AFPIGHIFDEVTIQGCDSNY-LFADLGSRTAVGQIHKSRVSKGAD-----LDTDFKTGST 479

Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA-VDSFGAIVQFPGG 521
            R R+LG+   + +    +     +       D+  G  VK KV   V   G  V     
Sbjct: 480 HRARVLGYSLFDNVYILTMDEEKIDQKYLRMEDIPAGQYVKCKVDKIVPGKGIQVNLEDT 539

Query: 522 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKR--ITVTHKKTLVKSKLA-I 576
            +   P  H+S+  ++ P +KFK+G  +  RVL V   S R  I +T K+TLV +  + I
Sbjct: 540 FEGFVPDVHISDVHLLYPQRKFKIGRXVKGRVLRVSXNSTRPTIYITLKRTLVSADDSEI 599

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
            SS+ EAT        + +    GC V F+  ++GF P SE+      +P     +GQ V
Sbjct: 600 XSSFDEATVGKXALATVERFYPGGCLVSFFGFLRGFLPNSEISETFVSKPXDFLKLGQTV 659

Query: 637 KCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV------VVYVI 690
           + RI++      R+ +S  +  T +SE     +  +V G   +V  N V      ++  +
Sbjct: 660 RVRIINVEKEKNRMKVSMRVAET-LSEKQTEAMEXIVPGKT-IVECNIVEKNRNSLIAEL 717

Query: 691 AKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFDQLLVLDNESSNLL-LSAKYSLIN 747
           A    +G IP   L+D  + E  +++K     G     L++    +   + L+ K SL+ 
Sbjct: 718 ADSNLRGVIPCGQLSDKTYDECRSLLKKT-XVGSXVKALVISKVPNGRFVDLTLKPSLMK 776

Query: 748 SAQQ--LPSDASHIHPNSV-VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
            A    LPSD S I  +S  +HG+V N+   G FV F  +LTG              L K
Sbjct: 777 DAANGVLPSDYSDITMSSKELHGFVKNVTRYGVFVSFANQLTGLILPRYLNSNDVEYLEK 836

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQS 833
            ++V QS+   ++ ++    R  LS+K+S
Sbjct: 837 KFFVNQSISCRVVKMDDANXRFLLSMKES 865



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 166/744 (22%), Positives = 312/744 (41%), Gaps = 109/744 (14%)

Query: 776  GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
            GC V F G L GF P S+  +   +       +GQ+VR  I++V  E  R+ +S++    
Sbjct: 623  GCLVSFFGFLRGFLPNSEISETFVSKPXDFLKLGQTVRVRIINVEKEKNRMKVSMR---- 678

Query: 836  SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
                             +A   S K   +    V G    +++E  + E N   ++    
Sbjct: 679  -----------------VAETLSEKQTEAMEXIVPG---KTIVECNIVEKNRNSLIAELA 718

Query: 896  EHSDVYGFITHHQLAGATVES----------GSVIQAAILDVAKAERLVDLSLKTVFIDR 945
            + S++ G I   QL+  T +           GS ++A ++      R VDL+LK   +  
Sbjct: 719  D-SNLRGVIPCGQLSDKTYDECRSLLKKTXVGSXVKALVISKVPNGRFVDLTLKPSLM-- 775

Query: 946  FREANSNRQAQKKKRKREASKDLG--VHQTVNAIVEIVKENYLV-LSLPEYNHSIGYASV 1002
             ++A +            +SK+L   V       V +   N L  L LP Y +S      
Sbjct: 776  -KDAANGVLPSDYSDITMSSKELHGFVKNVTRYGVFVSFANQLTGLILPRYLNS------ 828

Query: 1003 SDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLK-----AISETETSSSKRAKK 1057
               N  ++ +K+F   QS+   V+ +  ++   R LL +K      I        K  KK
Sbjct: 829  ---NDVEYLEKKFFVNQSISCRVVKMDDANX--RFLLSMKESKGGVIEPXNNPVDKHIKK 883

Query: 1058 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQ 1115
             + Y  G + +A +  +K   L ++      GRI +T + D   ++ +  N  S FK G+
Sbjct: 884  LNEYIPGRITRAVVKSVKLAYLIVRLADNQLGRIDVTNLFDKFEDIKDPKNPTSQFKEGE 943

Query: 1116 TVTARIIAKSNKPDMKKSFLWE-----------LSIKPSMLTVSEIGSKLLFEEC-DVSI 1163
             +  ++I   +  +   ++L E           LS +   +   +   +L      D  I
Sbjct: 944  ILKVKVIGYFDSRN--HTYLTENHRRFDESVIGLSARKVDIDTGKNTERLNLPTIEDAKI 1001

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  + G+V         ++++   K ++  ++ + + S L + ++   IG A+   ++ +
Sbjct: 1002 GDEILGFVNNFSIGAVWISMAXKYKGRVSFMNLSSDISVLSDVEKVHPIGSALKLKIVDV 1061

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
             K+   + L       G +D    I +      +H GD V  R+ K+      +++++G 
Sbjct: 1062 XKQYSTVEL------SGRADYITSIDS------VHVGDRVPARVVKVYESY--VLLELGD 1107

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
            H+    + TE  +         Y +      +VLE+ +  +    +E+SL+S        
Sbjct: 1108 HVDAAAYITEALDDYDQKLEEVYAQNDVXAARVLEVDKPSK---RIEVSLQS-------- 1156

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
               D + D     K ++  +DL    IV+G+V  + + G  + LS+ + A V ++NLSD 
Sbjct: 1157 ---DTAKD-----KSIDSADDLKVGDIVRGFVNRINNGGLLVXLSKDVYAFVKVANLSDS 1208

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
            Y++  +  F + + V G+V+  + L K + ++LK SD  +     +    +L VG+I  G
Sbjct: 1209 YLKDWKPFFKLYQPVTGKVVRADGLGK-IMLSLKESDI-SGKAHLLKRFEDLKVGEIYDG 1266

Query: 1464 QIKRVESYGLFITIENT-NLVGLC 1486
             +K V  YG+F+ ++   NL G  
Sbjct: 1267 VVKSVVEYGVFVKLDGCLNLTGFV 1290



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 102/474 (21%), Positives = 218/474 (45%), Gaps = 42/474 (8%)

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLT 1146
              G I   +++D   +   +L     +G  V A +I+K     +      +L++KPS++ 
Sbjct: 722  LRGVIPCGQLSDKTYDECRSLLKKTXVGSXVKALVISK-----VPNGRFVDLTLKPSLMK 776

Query: 1147 VSEIGSKLLFEECDVSIGQR-VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205
             +  G  L  +  D+++  + + G+V  V      ++ +  L     IL      ++++ 
Sbjct: 777  DAANGV-LPSDYSDITMSSKELHGFVKNVTRYGVFVSFANQLTG--LILPRYLNSNDVEY 833

Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE-GDIVG 1264
             +++F + ++++  V+ ++       L ++  + G+    ++  N+ +   I +  + + 
Sbjct: 834  LEKKFFVNQSISCRVVKMDDANXRFLLSMKESKGGV----IEPXNNPVDKHIKKLNEYIP 889

Query: 1265 GRISKILSG---VGGLVVQIGPHLYGRVHFTEL--KNICVSDP---LSGYDEGQFVKCKV 1316
            GRI++ +     +  L+V++  +  GR+  T L  K   + DP    S + EG+ +K KV
Sbjct: 890  GRITRAVVKSVKLAYLIVRLADNQLGRIDVTNLFDKFEDIKDPKNPTSQFKEGEILKVKV 949

Query: 1317 LEISRTVRGTFHVELSLR--SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            +    +   T+  E   R   S+ G+S+    D+ T  +T   +L  IED      + G+
Sbjct: 950  IGYFDSRNHTYLTENHRRFDESVIGLSA-RKVDIDTGKNTERLNLPTIEDAKIGDEILGF 1008

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            V N +    +I ++ K   +V   NLS     +   EK  PIG  +  +++ V      V
Sbjct: 1009 VNNFSIGAVWISMAXKYKGRVSFMNLSSDISVLSDVEKVHPIGSALKLKIVDVXKQYSTV 1068

Query: 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESYGLFITIENTNLVGLCHVSEL 1491
            E++             I ++ ++HVGD V  ++ +V ESY L    ++ +     +++E 
Sbjct: 1069 ELS--------GRADYITSIDSVHVGDRVPARVVKVYESYVLLELGDHVD--AAAYITEA 1118

Query: 1492 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK----NDADNLQM 1541
             +D+   +E +Y   +    ++L+VDK  +RI + ++S   K    + AD+L++
Sbjct: 1119 LDDYDQKLEEVYAQNDVXAARVLEVDKPSKRIEVSLQSDTAKDKSIDSADDLKV 1172



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 1361 KIEDLSPNMIVQGYV-KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
            ++ED+     V+  V K V  KG  + L    +  V   ++SD ++  P+++F IG+ V 
Sbjct: 509  RMEDIPAGQYVKCKVDKIVPGKGIQVNLEDTFEGFVPDVHISDVHLLYPQRKFKIGRXVK 568

Query: 1420 GRVLSVEPLSKR--VEVTLKTSDSRTASQSEI-NNLSNLHVGDIVIGQIKRVESYGLFIT 1476
            GRVL V   S R  + +TLK +   +A  SEI ++     VG   +  ++R    G  ++
Sbjct: 569  GRVLRVSXNSTRPTIYITLKRT-LVSADDSEIXSSFDEATVGKXALATVERFYPGGCLVS 627

Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
                 L G    SE+SE  V       + G+ V+V+I+ V+KEK R+ + M+
Sbjct: 628  FFGF-LRGFLPNSEISETFVSKPXDFLKLGQTVRVRIINVEKEKNRMKVSMR 678



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 107/486 (22%), Positives = 214/486 (44%), Gaps = 86/486 (17%)

Query: 1064 GSLVQAEITEIKP---LELRLKFGI-GFHGRIHITEVNDDKSNVVENLFSN--FKIGQTV 1117
            G  V+ ++ +I P   +++ L+    GF   +HI++V+         L+    FKIG+ V
Sbjct: 516  GQYVKCKVDKIVPGKGIQVNLEDTFEGFVPDVHISDVH--------LLYPQRKFKIGRXV 567

Query: 1118 TARII---AKSNKPDMKKSFLWELSIKPSMLTV--SEIGSKLLFEECDVSIGQRVTGYVY 1172
              R++     S +P +       +++K ++++   SEI S   F+E   ++G+     V 
Sbjct: 568  KGRVLRVSXNSTRPTIY------ITLKRTLVSADDSEIXSS--FDEA--TVGKXALATVE 617

Query: 1173 KVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232
            +      L++    L+   F+ +S    + + +      +G+ V   ++++ KEK  +++
Sbjct: 618  RFYPGGCLVSFFGFLRG--FLPNSEISETFVSKPXDFLKLGQTVRVRIINVEKEKNRMKV 675

Query: 1233 VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG-PHLYGRVHF 1291
             +R     +++   +   + M+  +    IV   I  +      L+ ++   +L G +  
Sbjct: 676  SMR-----VAETLSEKQTEAMEXIVPGKTIVECNI--VEKNRNSLIAELADSNLRGVIPC 728

Query: 1292 TELKNICVSDPLSGYDEGQFV--------KCKVLEISRTVRGTFHVELSLRSSL--DGMS 1341
             +L +         YDE + +          K L IS+   G F V+L+L+ SL  D  +
Sbjct: 729  GQLSD-------KTYDECRSLLKKTXVGSXVKALVISKVPNGRF-VDLTLKPSLMKDAAN 780

Query: 1342 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1401
                SD S D+    K L             G+VKNVT  G F+  + +L   +L   L+
Sbjct: 781  GVLPSDYS-DITMSSKEL------------HGFVKNVTRYGVFVSFANQLTGLILPRYLN 827

Query: 1402 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV---- 1457
               VE  EK+F + + ++ RV+ ++  + R  +++K  +S+       NN  + H+    
Sbjct: 828  SNDVEYLEKKFFVNQSISCRVVKMDDANXRFLLSMK--ESKGGVIEPXNNPVDKHIKKLN 885

Query: 1458 ----GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----NIETIYRAGEK 1508
                G I    +K V+   L + + + N +G   V+ L +   D     N  + ++ GE 
Sbjct: 886  EYIPGRITRAVVKSVKLAYLIVRLAD-NQLGRIDVTNLFDKFEDIKDPKNPTSQFKEGEI 944

Query: 1509 VKVKIL 1514
            +KVK++
Sbjct: 945  LKVKVI 950


>gi|340503389|gb|EGR29983.1| programmed cell death 11, putative [Ichthyophthirius multifiliis]
          Length = 2032

 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 327/1497 (21%), Positives = 621/1497 (41%), Gaps = 206/1497 (13%)

Query: 156  GLRG------LARAADALDPILDNEIEANEDNLLPTIFHVGQ-LVSCIVLQLDDDKKEIG 208
            GL+G      L+R   A   I D   E NE++ L  I++ G+ L+  IV  + +    I 
Sbjct: 137  GLKGQFLIVNLSRNKKAFLTIADAVEEKNEESDL-RIYNQGEYLIGEIVNSIKEGNSNI- 194

Query: 209  KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRN-NL 266
                  S++ S++ +GL    + E M+L   V + E++G  + F     + GFL ++ N+
Sbjct: 195  ------SIKPSVVNEGLQFNEIYENMLLQGKVLTKEEYGIKVVFHTSQQYIGFLKKDKNV 248

Query: 267  AENSGI-DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID-------- 317
             E+    D++ G +    V   +  +K++YLS    T    + + +   SID        
Sbjct: 249  CEDDQYEDLEEGRVYMFRVEKKENNKKLLYLSLKYTTQE--IKESILNPSIDIEDGSDFH 306

Query: 318  -LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
             L  PG +V+  +  +L NG+++ F   F G +   HL N  P +     Y   +++ AR
Sbjct: 307  HLAKPGNLVNCLIIKVLSNGLVVRFFKQFIGFIFEDHLDNNQPES-----YKVKERILAR 361

Query: 377  ILFVDPTSRAVGLTLNPYLLHNRAPPSHVKV--GDIYDQS-KVVRVDRGLGLLLDIPSTP 433
            I+  +   + + L+     +  +A     K   GD++ Q  K+ +V  G   L+ I +T 
Sbjct: 362  IIAANFDQKHINLSAKKVHVDLQAFNQSYKYKPGDVFTQGFKIKKVLYGDSYLVKIQNTS 421

Query: 434  VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTH 493
            +           A++E  K  + Y +   ++  I  F H             F   V   
Sbjct: 422  IDNGFLHKNQLHADKESFKEGQNYTKALKLK-EINYFEHFPIFTA----KEEFVKNVKNW 476

Query: 494  SDVKPGMVVKGKVIAV-----DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK---FKV 545
            +D++PGMV+  KV  +     + +   V+    +K +    +  +     P  K   FK 
Sbjct: 477  TDLRPGMVLNVKVEKIIQGHQNQYKVKVEINENIKGIIDYLNTQD----HPQSKNLNFKE 532

Query: 546  GAELVFRVLGV--KSKRITVTHKKTLVKS-KLAILSSYAEATDRLITHGWITKIEKHGCF 602
            G  +  R+L V  + K++ +T K+TLV + +  I+ S+          G+I+     G  
Sbjct: 533  GKRVTVRILSVNLEEKKLKLTAKQTLVNAPEDCIIKSWENIQQNNKYLGYISGKTDFGYI 592

Query: 603  VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM------- 655
            ++F+N V+G     ++  +   +  + Y +GQ+++  ++   P ++++ LS         
Sbjct: 593  IQFFNNVKGLLTYKDIE-NLNKKNRNDYKIGQILETYVVFINPLNQKLALSLTEKGFQEA 651

Query: 656  --MKPTRVSEDDLVKLGSLVSGVVDV-----------VTPNAVV--VYVIAKGYSKGTIP 700
               K    S   + ++ SL +  V++           V  N +   V V+     K  +P
Sbjct: 652  QNQKKNNTSRKTVFEMQSLNNEDVELNVNEGDICEYKVDSNNIYKDVIVLFNENHKAILP 711

Query: 701  TEHLADHLEHATVMKSVIKPGYEFDQLLVLD-NESSNLLLSAKYSLINSAQQLPSDASHI 759
             EHL+D   H  ++   ++      +  +++   + N+L+SAK SL+++    P+    I
Sbjct: 712  LEHLSDFQWHYEILNEHLRSTKGSLKCKIINIFPNKNVLVSAKASLLSNMN--PNCVEDI 769

Query: 760  HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV-GQSVRSNILD 818
                +  GY+      G  V+F  R+  F  +    +  + +   +  V  +++ +N ++
Sbjct: 770  KNGYIYTGYIDRGARKGIVVKFNERIKIFVGKESFEENVQFNTYDSVAVLVKNIENNKIN 829

Query: 819  ---VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIG 875
               +N    R  +S K S  S+          L  E+ A+LQ         K  + F +G
Sbjct: 830  ATLLNENIFRHKMSKKISFFSN----------LFTEQYAVLQDKNK-----KVWQKFKVG 874

Query: 876  SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES------GSVIQAAILDVAK 929
            + +   VH   DFG++   E +  + GFI    L     +       G  IQ  I+D+  
Sbjct: 875  NYLNTTVHIIKDFGIITKIEGNDSLTGFILIEHLMNNEAQQKIEIWEGKKIQCKIIDIDF 934

Query: 930  AERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEI---VKENYL 986
             + ++DL +   F+   ++  +N+Q   +          G  Q +  I E+   V++N+ 
Sbjct: 935  EKEVLDL-IPVDFLP-LKQLINNKQNLDEFFN-------GNFQNIPIIEEVKVLVEKNHY 985

Query: 987  VLSLPEYNHSIGYASVSDYNTQKFPQKQF----LNGQSVIATVMALPSSSTAGRL----L 1038
            ++ + +  + I Y + ++ N  +  +K F     N + V   ++      +  +     L
Sbjct: 986  LICIIQNTNIICYVNTNNINNIQHEKKYFNDKIYNVRLVNKDLLDKKKQQSINKSTYVPL 1045

Query: 1039 LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
               K I   +           +   G  V  +I + +   L ++     +G++H T+++D
Sbjct: 1046 YEQKVIRREQNQDQINNTSHVNLVPGEKVSGKILKKQGNNLHVQLRGKLYGKLHKTQLDD 1105

Query: 1099 DKSNVVENLFSNFKIGQTVTARII-AKSNKPDMKKSFLWELS--IKPSMLTVSEIGSKLL 1155
             K       F  F+  + +  +I+  K N+ ++    L  LS  +K   L  +   S+  
Sbjct: 1106 QKQ------FGKFQENELIQCKILYVKKNEKNIDIE-LTALSCHLKADFLDENNYLSQYE 1158

Query: 1156 FEECDVSIGQRVTGYVYKVDNE-----WALLTISRHLKAQLFILDSAYEP-SELQEFQRR 1209
                + +I Q+  G V  +D       +  LT S       F L     P S L+  + +
Sbjct: 1159 STFQEKNINQKFLGLVKSIDKSSIHPIYVELTNSHSGYVSAFDL-----PFSHLENIEDK 1213

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
            + IG      ++ I + KK L+ + R    GI     ++S         +G ++  +I K
Sbjct: 1214 YSIGNLCDWKIVGIQENKKGLKNI-RLLPAGI-----ELSE------YKQGTLLNVKILK 1261

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
              +  GG+ VQI    +  +H +E+ +     P   ++ GQ+ K ++LE     R   +V
Sbjct: 1262 -KNAQGGIRVQISDEKFTNIHISEICDEWEGVPAEHFESGQYTKGRILE-----RDDENV 1315

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE------KIE---------------DLSPN 1368
            ++SLR ++     TN ++    +   G  +E      ++E                L   
Sbjct: 1316 QISLRQAV-----TNENNWKKALGPSGNTIEYKKIFQEVEKQGDLRNRLIKLGQGSLKQG 1370

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
            MI  GY+     KGCF+ +S     +V L  LSD Y+E P+  F   KLV GR+  ++  
Sbjct: 1371 MIFVGYINQTNDKGCFVNISYNTIIRVGLQELSDDYLEKPQISFYKNKLVVGRITDIKQD 1430

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSN-LHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             K +E +L+ S  +       N +   + V  +V+G  +   S    + I+     G   
Sbjct: 1431 GK-IEGSLRDSIVKFGFSLNENKIKQGMTVKGVVVGHYQGKAS----VAIQGCKFRGSLD 1485

Query: 1488 VSELS---EDHVDNIETIYRAGEKVKVKILKVDKE-KRRISLGMKSSY---FKNDAD 1537
              +     E  +  +E +   G +V  K++K +KE K RI LG    Y   F N+ D
Sbjct: 1486 KDDTDFTEEQRMGFVEKLLPLGSQVLAKVIKFEKEPKVRIILGNSQKYIQKFSNEVD 1542


>gi|68076587|ref|XP_680213.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56501107|emb|CAH98739.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 432

 Score =  171 bits (434), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 163/289 (56%), Gaps = 29/289 (10%)

Query: 1661 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY 1720
            P ++E+L+ S  N S +WI Y+ + L   ++++AR+IAERAL+TI+I    EKLNI++ Y
Sbjct: 146  PYDYEKLLVSEKNKSTIWISYIVYYLEKGNIQEARNIAERALKTIDIHLIEEKLNIYLCY 205

Query: 1721 FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1780
             N+E  YG+   E    +F+RAL   + K ++L  + + +  ++     EL  + IKKFK
Sbjct: 206  INMECAYGDNLNE----IFKRALLVNNEKSIYLHTMNILKMNKKLNELKELCEEGIKKFK 261

Query: 1781 HSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1838
            +S K+W R ++ L      +E    ++ ++L +LP+ KH+  I   A  E+K    +RG+
Sbjct: 262  YSKKIWTRYLELLHNTLNDEEYAHNILLKSLHALPKRKHLNIIINAARFEYKYSNIERGK 321

Query: 1839 SMFEGILSEYPKRTDLWSIYLD-----------------------QEIRLGDVDLIRGLF 1875
            + FE ++ EYPKR+D+W  YLD                       +++ L ++  IR +F
Sbjct: 322  NYFEKLIQEYPKRSDIWFTYLDIHINSLTKAKKNENDDENQKKKIKKLTLNELQFIRNIF 381

Query: 1876 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            ER +S+    + MK +F K+L +EK+ G     + V++KA +YVES  A
Sbjct: 382  ERFLSIKFKTRVMKMIFTKWLLFEKNHGSVNTQKMVQKKAYDYVESLNA 430


>gi|302823614|ref|XP_002993458.1| hypothetical protein SELMODRAFT_431529 [Selaginella moellendorffii]
 gi|300138732|gb|EFJ05489.1| hypothetical protein SELMODRAFT_431529 [Selaginella moellendorffii]
          Length = 743

 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 181/352 (51%), Gaps = 83/352 (23%)

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
            L+S+L+      +     D+  PG+    +E       + G+VKNVT KGCF++L+  L+
Sbjct: 468  LKSALNQFIYRGTVRKVLDLKRPGRGKMGLE-------LSGFVKNVTEKGCFVVLAPSLE 520

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
            A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS  +E++L  + S+ +S       
Sbjct: 521  ARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSGHIEMSLAATTSQDSS-----GW 575

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLV------GLCHVSELSEDHVDNIETIYRAG 1506
                 G+IV G+I  +E++G+FI++  +N+        LCH SE+S D + ++ T+Y+ G
Sbjct: 576  KKFGAGEIVSGRIHNIEAFGIFISLAESNVFLVCAPGCLCHFSEVSYDFIQDLSTLYKVG 635

Query: 1507 EKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENS 1566
            + V+VKILKVD E +RISLGMK+SY                                   
Sbjct: 636  QWVQVKILKVDAETKRISLGMKASY----------------------------------- 660

Query: 1567 SVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTID 1626
                    +  EDG             + P+E    +E+P   N +  N    +E   +D
Sbjct: 661  --------LTPEDG-------------IEPMEEEAINEEPSNTNVLMDND-EREEEDYLD 698

Query: 1627 EKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFV 1677
              + R  +   +        AA+E+LL+KD  P T D+FERLV +SPNSS++
Sbjct: 699  LASKRFPQLCMEA-------AAKEKLLQKDQPPETKDDFERLVAASPNSSYM 743


>gi|270007539|gb|EFA03987.1| hypothetical protein TcasGA2_TC014136 [Tribolium castaneum]
          Length = 1062

 Score =  171 bits (433), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 178/304 (58%), Gaps = 17/304 (5%)

Query: 1632 HAKKKEK---EEREQEIRAAEERL--LEKD------APRTPDEFERLVRSSPNSSFVWIK 1680
             +KKK+K    ER +  +  EER+  +E +       P++ ++F+RL+ ++PNSS +W++
Sbjct: 758  QSKKKKKLTPAERAEIAKKEEERISKIENELADSTIPPQSAEQFDRLLLANPNSSKLWLQ 817

Query: 1681 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1740
            YM+  ++  +++KAR++ +RAL TIN+    EK N+W+A  NLEN YG   +E+  K F+
Sbjct: 818  YMSMHIATTELDKARAVGKRALDTINMTLVKEKYNVWIALLNLENMYGT--KESFDKTFE 875

Query: 1741 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR--RVQRLLKQQQ 1798
             A++  D  +++L ++ +   + + +  +E + K+  K K + K+WL   R+   L Q +
Sbjct: 876  EAVRCNDSLEIYLNVIQMLATSGKLQEMEEKIKKVRAKEKQNTKMWLEISRIYYSLGQFK 935

Query: 1799 EGVQAVVQRALLS-LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1857
            E  + V + AL S L + +    I +  I+EF+ G  D+  + FE IL  YP + ++W I
Sbjct: 936  EA-RNVKESALKSILDKKRQFDLIVKFGIMEFQLGELDQAVANFETILDTYPSKVNIWII 994

Query: 1858 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917
            Y+DQ +R  + +  R   ERAIS     K MK LF+K++ +E+  G  E +E +K KA E
Sbjct: 995  YVDQLVRKKNFEAARKTLERAISQKFAMKTMKVLFQKFISFEEQYGSPESVEDIKSKAKE 1054

Query: 1918 YVES 1921
            Y+ S
Sbjct: 1055 YLAS 1058



 Score = 98.2 bits (243), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 183/416 (43%), Gaps = 27/416 (6%)

Query: 314 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND-YNQHKK 372
           +SI  L+PGM V   V+ IL +G+           VD      TF  +  K +   + K 
Sbjct: 5   LSISDLIPGMKVDFFVEEILPHGIKGQLAENCYAYVD-----ETFTFSRIKKERIKEGKS 59

Query: 373 VNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPST 432
           + A +LFV+P ++   L+L       + P   + +G +     +  V +GL L L+   T
Sbjct: 60  IPAYVLFVEPVTKVTYLSLRGL---EKLPEPELTIGQVCSAQILYNVPKGLYLQLNQTET 116

Query: 433 PVSTPAYV--TISDVAEEE-VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGL 489
              +   +  T+   A+ + V  + KKY  GS  + R+L + H++ L     +    +  
Sbjct: 117 GFISNKRLLKTLPKGADVDIVSAIRKKYPNGSRHQCRVLDYNHMQQLYICTFEKQVIKEK 176

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK-KFKVGAE 548
           +FT SD+K G  V  +V  V + G I +  G V+   P   +S  +  +  K KF VG  
Sbjct: 177 IFTVSDLKIGQAVTAQVTKVVTNGLITKV-GHVQGFVPNLQLSNAKFTQNIKAKFTVGMT 235

Query: 549 LVFRVLGVKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
           +  RVL +    + +T K+ LV+S   LA L      +  +   G++ +++  G  V FY
Sbjct: 236 VNARVLNITDGNVILTLKQGLVESDKCLATLEQLIPCSQYV---GFVVQVKVAGALVAFY 292

Query: 607 NGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
             ++G+     L         +P   + +GQVV   ++      +   L   +   +   
Sbjct: 293 GDIKGWISNRVLNHASSGHYLDPREYFFIGQVVTVWVL----GIKNDKLHLSLNAPKGQN 348

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
              +K+G   +G V  +  + + V  ++    K TIP  HL+ +L    V+ ++++
Sbjct: 349 KHKIKIGQTDNGSVTKIHSDGLDVK-LSNYEVKATIPLAHLSTNLSLCPVLLTILQ 403


>gi|91082491|ref|XP_972709.1| PREDICTED: similar to programmed cell death protein 11 (pre-rrna
            processing protein rrp5) [Tribolium castaneum]
          Length = 953

 Score =  171 bits (432), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 178/304 (58%), Gaps = 17/304 (5%)

Query: 1632 HAKKKEK---EEREQEIRAAEERL--LEKD------APRTPDEFERLVRSSPNSSFVWIK 1680
             +KKK+K    ER +  +  EER+  +E +       P++ ++F+RL+ ++PNSS +W++
Sbjct: 649  QSKKKKKLTPAERAEIAKKEEERISKIENELADSTIPPQSAEQFDRLLLANPNSSKLWLQ 708

Query: 1681 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1740
            YM+  ++  +++KAR++ +RAL TIN+    EK N+W+A  NLEN YG   +E+  K F+
Sbjct: 709  YMSMHIATTELDKARAVGKRALDTINMTLVKEKYNVWIALLNLENMYGT--KESFDKTFE 766

Query: 1741 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR--RVQRLLKQQQ 1798
             A++  D  +++L ++ +   + + +  +E + K+  K K + K+WL   R+   L Q +
Sbjct: 767  EAVRCNDSLEIYLNVIQMLATSGKLQEMEEKIKKVRAKEKQNTKMWLEISRIYYSLGQFK 826

Query: 1799 EGVQAVVQRALLS-LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1857
            E  + V + AL S L + +    I +  I+EF+ G  D+  + FE IL  YP + ++W I
Sbjct: 827  EA-RNVKESALKSILDKKRQFDLIVKFGIMEFQLGELDQAVANFETILDTYPSKVNIWII 885

Query: 1858 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917
            Y+DQ +R  + +  R   ERAIS     K MK LF+K++ +E+  G  E +E +K KA E
Sbjct: 886  YVDQLVRKKNFEAARKTLERAISQKFAMKTMKVLFQKFISFEEQYGSPESVEDIKSKAKE 945

Query: 1918 YVES 1921
            Y+ S
Sbjct: 946  YLAS 949



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 111/496 (22%), Positives = 205/496 (41%), Gaps = 60/496 (12%)

Query: 260 FLPRNNLAENSGIDVKPGLLLQGVVRSIDR----------TRKVVYLSSDPDTVSKCVTK 309
           +  +  L +  G  V+ G+++   +R              T   V +++  D  +  +TK
Sbjct: 22  YQEKKKLLKTCGKRVQDGMVVLACIRRFSNLSVQVEFPGLTYGAVAINNISDVFTASITK 81

Query: 310 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND-YN 368
           +LK  + DL++P             +G+           VD      TF  +  K +   
Sbjct: 82  ELKANN-DLILP-------------HGIKGQLAENCYAYVD-----ETFTFSRIKKERIK 122

Query: 369 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 428
           + K + A +LFV+P ++   L+L       + P   + +G +     +  V +GL L L+
Sbjct: 123 EGKSIPAYVLFVEPVTKVTYLSLRGL---EKLPEPELTIGQVCSAQILYNVPKGLYLQLN 179

Query: 429 IPSTPVSTPAYV--TISDVAEEE-VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASA 485
              T   +   +  T+   A+ + V  + KKY  GS  + R+L + H++ L     +   
Sbjct: 180 QTETGFISNKRLLKTLPKGADVDIVSAIRKKYPNGSRHQCRVLDYNHMQQLYICTFEKQV 239

Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK-KFK 544
            +  +FT SD+K G  V  +V  V + G I +  G V+   P   +S  +  +  K KF 
Sbjct: 240 IKEKIFTVSDLKIGQAVTAQVTKVVTNGLITKV-GHVQGFVPNLQLSNAKFTQNIKAKFT 298

Query: 545 VGAELVFRVLGVKSKRITVTHKKTLVKSK--LAILSSYAEATDRLITHGWITKIEKHGCF 602
           VG  +  RVL +    + +T K+ LV+S   LA L      +  +   G++ +++  G  
Sbjct: 299 VGMTVNARVLNITDGNVILTLKQGLVESDKCLATLEQLIPCSQYV---GFVVQVKVAGAL 355

Query: 603 VRFYNGVQGFAPRSELGLDPG---CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT 659
           V FY  ++G+     L         +P   + +GQVV   ++      +   L   +   
Sbjct: 356 VAFYGDIKGWISNRVLNHASSGHYLDPREYFFIGQVVTVWVL----GIKNDKLHLSLNAP 411

Query: 660 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
           +      +K+G   +G V  +  + + V  ++    K TIP  HL+ +L    V+ +  K
Sbjct: 412 KGQNKHKIKIGQTDNGSVTKIHSDGLDVK-LSNYEVKATIPLAHLSTNLSLCPVLLTNAK 470

Query: 720 PG---------YEFDQ 726
            G         Y FD+
Sbjct: 471 IGSVVEGVVLDYNFDE 486


>gi|294939872|ref|XP_002782591.1| programmed cell death protein, putative [Perkinsus marinus ATCC
            50983]
 gi|239894389|gb|EER14386.1| programmed cell death protein, putative [Perkinsus marinus ATCC
            50983]
          Length = 235

 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 134/221 (60%), Gaps = 8/221 (3%)

Query: 1703 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1762
            Q +  R+E ++LN+W+AY NLE       E+    +F+RA  Y D KKVH+A+  ++ R 
Sbjct: 1    QRLGFRDEQDRLNLWIAYLNLEAHVRGRVED----LFKRAASYNDSKKVHMAMCDVWARA 56

Query: 1763 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKF 1820
                LA E   +  +KF HS KVW++ ++ L    +  E  Q  + RAL    R KH   
Sbjct: 57   GAEDLALEAYKRTAEKFGHSKKVWMKYLEFLYSTGKLSEARQNCLPRALRLTDRRKHSLI 116

Query: 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG--DVDLIRGLFERA 1878
             ++ A LE+K G  +RG+++FE +L+  PKR D+WS+YLD+ I     D D +R +F+RA
Sbjct: 117  ATRAAKLEYKYGTVERGKTIFESLLASQPKRLDIWSVYLDEHINANKEDADQVRSVFDRA 176

Query: 1879 ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
            ++L L P KMKF FK+++ +E+S G+ + ++ VK KA EYV
Sbjct: 177  VTLKLKPAKMKFFFKRWVNFEQSYGDVDHLDLVKDKAREYV 217


>gi|221060604|ref|XP_002260947.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
            knowlesi strain H]
 gi|193811021|emb|CAQ42919.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
            knowlesi strain H]
          Length = 459

 Score =  168 bits (426), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 155/280 (55%), Gaps = 22/280 (7%)

Query: 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1719
             P ++ERL+ S  N+S +W+ Y+A+ L    +E+AR  AERAL+TI+I +  EK NI+  
Sbjct: 179  NPSDYERLLASEKNNSAIWVSYIAYHLQKGSLEEARKTAERALKTIDIHKVEEKKNIFFC 238

Query: 1720 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1779
            Y N+E  YG+   E    VF+RAL  C+ KKV++  + + +  ++     +L  + IKKF
Sbjct: 239  YINMECTYGDKLRE----VFKRALLCCNEKKVYMHTMNVLKVNKKYNQLKQLSEEAIKKF 294

Query: 1780 KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837
             +S K+W   ++ +     +   A  ++ ++L  LP+ KH++ +   A  E+K    +RG
Sbjct: 295  HYSKKIWSHYLEIIHSTFNDEAYAHEILLKSLHCLPKRKHLRMVINAARFEYKYANKERG 354

Query: 1838 RSMFEGILSEYPKRTDLWSIYLDQEI----------------RLGDVDLIRGLFERAISL 1881
            +S FE ++ EYPKR+D+W  YLD  I                 L  +  +R +FER  S 
Sbjct: 355  KSYFEKLIQEYPKRSDVWFTYLDIHINSLTKGETKGEKKKKLNLNQLQFVRNIFERFSSC 414

Query: 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
                + MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 415  KFKTRVMKMIFTKWLLFEKNHGNVTSQKMVQKKAYDYVES 454


>gi|399216606|emb|CCF73293.1| unnamed protein product [Babesia microti strain RI]
          Length = 953

 Score =  167 bits (422), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 177/326 (54%), Gaps = 32/326 (9%)

Query: 1621 EAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLE---KDAPRTPDEFERLVRSSPNSSFV 1677
            + KT+  K  R   KK+   RE+EIR  E + +    K+ P +P +FERL+  +   +  
Sbjct: 633  DTKTVISKTKR---KKKPRAREKEIRKIENKYVNGSWKENPESPWDFERLLVENNKLAET 689

Query: 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737
            WI+YMA+ L+ ++++ AR +AER ++ I I +   ++N+W+AY N+E +YG+  ++    
Sbjct: 690  WIRYMAYHLNNSNLKLAREVAERGIKAITINDLQGRMNLWIAYLNMEVKYGDNAKD---- 745

Query: 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1796
            VF+R++   DP  +++ +  +Y +  + +LA E   + I KF    ++W+  ++   K+ 
Sbjct: 746  VFKRSINCNDPATMYIKMFRIYSKCGKAELAMETANEGISKFPDLNELWIDLLKFYYKEG 805

Query: 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR-------GRSMFEGILSEYP 1849
            + +  + + ++A     + +     SQ A+LE+K G  +R       G+ MFE +L E  
Sbjct: 806  KADCAKELHKKASQRCSKREFCYITSQIALLEYKYGDPNRYRRDNISGQDMFEKLLDENA 865

Query: 1850 KRTDLWSIYLDQEI--------------RLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895
            KR D W  Y+D  I              R   ++ +R +F+RA  L L PKKMK +F K+
Sbjct: 866  KRMDFWQQYIDAHIKYKLKNFDNMEKSKRTESMEQLRNIFKRATYLGLKPKKMKIIFAKW 925

Query: 1896 LEYEKSVGEEERIEYVKQKAMEYVES 1921
            L +E   G+ +    V+++A +YVES
Sbjct: 926  LSFETDYGDAKSQATVRERARQYVES 951


>gi|302776674|ref|XP_002971488.1| hypothetical protein SELMODRAFT_412223 [Selaginella moellendorffii]
 gi|300160620|gb|EFJ27237.1| hypothetical protein SELMODRAFT_412223 [Selaginella moellendorffii]
          Length = 382

 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 163/308 (52%), Gaps = 73/308 (23%)

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 147  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 206

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
             +E++L  + S+ +S            G+IV   I  +E++G+FI++  +    LCHV+E
Sbjct: 207  HIEMSLAATTSQDSS-----GWKKFGAGEIVSDCIHNIEAFGIFISLAKS---CLCHVAE 258

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +S D + ++ T+Y+ G+ V+VKILKVD E +RISLGMK+SY                   
Sbjct: 259  VSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKASY------------------- 299

Query: 1551 IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDN 1610
                                    +  EDG             + P+E    +E+P   N
Sbjct: 300  ------------------------LTPEDG-------------IEPMEEEAINEEPSNTN 322

Query: 1611 GISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVR 1669
             +  N    +E   +D  + R  +   +        AA+E+LL+KD  P T D+FERLV 
Sbjct: 323  VLMDNDARVEE-DYLDLGSKRFPQLCMEA-------AAKEKLLQKDQPPETKDDFERLVA 374

Query: 1670 SSPNSSFV 1677
            +SPN S++
Sbjct: 375  ASPNKSYM 382



 Score = 84.0 bits (206), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 69/288 (23%)

Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
            + WA L +S HLK  LF        SEL+ F+ RF +G     H+ S+N E+K + L L 
Sbjct: 56   DNWAWLVLSPHLKGCLF--------SELERFKERFKVGNPFQCHIRSVNHERKQVDLSLH 107

Query: 1236 PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ--------------- 1280
                      +  S++  +    +GD++G RI+++ +GVGG  VQ               
Sbjct: 108  ----------LKTSDEQFK----KGDLLGRRITRVFAGVGGHTVQGRWESFGKVHGFVKN 153

Query: 1281 ---------IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
                     + P L  R+    L N  V +P   +  G+ +  ++L I      + H+E+
Sbjct: 154  VTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPL---SGHIEM 210

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
            SL       ++T S D S             +      IV   + N+ + G FI L++  
Sbjct: 211  SL-------AATTSQDSSG-----------WKKFGAGEIVSDCIHNIEAFGIFISLAKSC 252

Query: 1392 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
               V  + +S  +++     + +G+ V  ++L V+  +KR+ + +K S
Sbjct: 253  LCHV--AEVSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKAS 298


>gi|156102424|ref|XP_001616905.1| hypothetical protein [Plasmodium vivax Sal-1]
 gi|148805779|gb|EDL47178.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 458

 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 157/279 (56%), Gaps = 21/279 (7%)

Query: 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1719
            +P ++ERL+ S  N+S +W+ Y+A+ L    +E+AR  AERAL+TI+I +  EK NI+  
Sbjct: 179  SPSDYERLLASEKNNSAIWVSYIAYHLEKGSLEEARKTAERALKTIDIHKVEEKRNIFFC 238

Query: 1720 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1779
            Y N+E  YG+   E    +F+RAL  C+ KKV++  + + +  ++     +L  + IKKF
Sbjct: 239  YINMECTYGDKLRE----IFKRALLCCNEKKVYIHTMNVLKVNKKYNQLKQLSEEAIKKF 294

Query: 1780 KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837
             +S K+W   ++ +    ++   A  ++ ++L  L + KH++ +   A  E+K    +RG
Sbjct: 295  HYSKKIWSHYLEIIHSTFKDEAYAHEILLKSLHCLAKRKHLRMVINAARFEYKYANKERG 354

Query: 1838 RSMFEGILSEYPKRTDLWSIYLDQEI---------------RLGDVDLIRGLFERAISLS 1882
            +S FE ++ EYPKR+D+W  YLD  I                L  ++ +R +FER  S  
Sbjct: 355  KSYFEKLIQEYPKRSDVWFTYLDIHINSLTKSEIKGKKKKLNLNQLEFVRNIFERFSSCK 414

Query: 1883 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
               + MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 415  FKTRVMKMIFTKWLLFEKNHGSVASQKMVQKKAYDYVES 453


>gi|440295400|gb|ELP88313.1| programmed cell death protein, putative [Entamoeba invadens IP1]
          Length = 1782

 Score =  164 bits (414), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 133/489 (27%), Positives = 240/489 (49%), Gaps = 34/489 (6%)

Query: 1455 LHVGDIVIGQIKR-----VESYGLFITIENTNLVGLCHVSELSEDHVDNIETI---YRAG 1506
            +   D V G+  R     +   GLF    N+NL   CH S++          +   ++ G
Sbjct: 1305 VRASDAVCGKFARAVITAIYKSGLFFRFHNSNLRAFCHCSQIETGTFFTFSVLNSRFKVG 1364

Query: 1507 EKVKVKILKVDKE--KRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLE 1564
            +   VKI++ +    K  I + +K+     D  ++ +  E E D     +  +++     
Sbjct: 1365 DSHIVKIIQNNTRNGKPMIRVSIKAE----DIADVDIPDESEVDY----IDMWHKEDCKR 1416

Query: 1565 NSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDE-QPDMDNGISQNQGH----- 1618
                 +Q +  E +D    V  + +    V P+EV+ D+E    + N +   + H     
Sbjct: 1417 FIVQKIQTIKKELKDKIG-VNDEFKEPKEVIPVEVDWDEEGDVPLLNIVPNQKRHRMIRE 1475

Query: 1619 TDEAKTID-EKNNRHAKKKEKEEREQEIRAAEERLLEK-DAPRTPDEFERL---VRSSPN 1673
            + E+   D E  +    ++EKE+ ++E R  ++   E  D   T +  E L    +   N
Sbjct: 1476 SSESSEQDVESEDEMEVEREKEQPKEEPREEQKEDEENEDKAVTQEMVEDLYEIAQKDQN 1535

Query: 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733
            +S  WI+ +  +  ++ V KA    + AL+ I + +  ++ NIW AY  +E +Y    E 
Sbjct: 1536 NSEKWIELIRAVRKIS-VVKALFYCQTALRNIALDKTQDRENIWKAYLQIEAKYRTNSEF 1594

Query: 1734 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793
                  Q AL+ CD KK+   +  +++  +   + + +   +++K K S +V+ +     
Sbjct: 1595 QTA--LQDALRVCDVKKILFYMRSVFKSLQNISMEENMYTILLQKVKGSGRVYRKMCSFY 1652

Query: 1794 LK-QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1852
            ++  ++E    ++ +A   L + K++K   + A L++K G  D+GRSMFE IL E+PKR 
Sbjct: 1653 MRTSREENAMVLLSKARKMLTKPKYMKLRIKMAQLQYKYGSVDKGRSMFESILEEFPKRY 1712

Query: 1853 DLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1912
            DLW++YLD E R+G+  +IR LFER +++ L  K MK    KYL++E + G+  R+E+V+
Sbjct: 1713 DLWNVYLDMESRVGETPIIRRLFERIVAMKLSTKSMKTFLTKYLKFETNNGDNARMEHVR 1772

Query: 1913 QKAMEYVES 1921
            Q A +YVES
Sbjct: 1773 QIAQKYVES 1781



 Score = 76.3 bits (186), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 186/450 (41%), Gaps = 43/450 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  V+GKV  +     ++     V  +C   H++E         F  G  +  RVL +K+
Sbjct: 442 GAFVEGKVKTITKSYLVISVSKYVTGICFRKHVAEIPPDDLSDVFVKGQSVKARVLSIKN 501

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-KHGCFVRFYNGVQGFAPRSE 617
                T KK+ +  +L+I++S  +A D  IT+  +  ++ K G  + F+  V+G+ P  E
Sbjct: 502 NAFEFTMKKSYMVPELSIIASTEDALDNQITYAMVDHVDPKTGVNISFFGDVKGYVPIVE 561

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL------GS 671
           L  D   E  S++ +      R+  S     +I  S  + P     D +V L      G 
Sbjct: 562 L-FDHRVEAISLFSI-----LRVRVSSVEKGKITASLNLYPKEGKVDKIVDLISKFQVGE 615

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD 731
           + SG V     N ++V +     S  +I   H  +  +  + ++  IK G  F+Q LVL 
Sbjct: 616 IYSGTVIGKRMNKMLVRLRKDDASYVSILPNHYVEDGDDGSGIQEKIKNGSVFEQCLVLS 675

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
           N +  + ++ K SLI    ++    S+    ++  G     +  GC V F+G+       
Sbjct: 676 NIAGKITITTKKSLIALKSKIAKCDSY---QTLEEG-----VYVGC-VNFVGQF------ 720

Query: 792 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR---ITLSLKQSCCSSTDASFMQEHFL 848
            KAV          +Y    +  + +D+ ++  +     L L Q+       +   +HF 
Sbjct: 721 -KAV--------VVFYNHVQISVHAIDITNDQDKPMNTLLKLGQTVVGKVRRAKEVKHFN 771

Query: 849 LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS-FEEHSDVYGFITHH 907
           + E        +         + F+ GS I   V E+ D+G++ S + +++    F    
Sbjct: 772 MRENAGYCMPEEAFLLPAFPQKPFVFGSEIVITVDETQDYGIIGSAYLDNTKYTTFTPKA 831

Query: 908 QLAG--ATVESGSVIQAAILDVAKAERLVD 935
            + G  AT   G+  +A ++   +   +VD
Sbjct: 832 GIKGEIATFAIGNTFKAVVIGFDQKTNIVD 861


>gi|342321045|gb|EGU12983.1| U3 snoRNP-associated protein Rrp5 [Rhodotorula glutinis ATCC
           204091]
          Length = 1507

 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 196/790 (24%), Positives = 336/790 (42%), Gaps = 104/790 (13%)

Query: 3   ASSRKSQKKSSKDGPK----FNKASKNQFKNSKKQINDAVEAQ---------DLALPPDD 49
           A+SR  +  SS   P+      ++SK      KK+  +  E +          L+L    
Sbjct: 15  AASRPFKAPSSSQPPRRTASTTQSSKPALAGGKKRTREGREDEPEKAVVTQSSLSLLNQP 74

Query: 50  DVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERG-------------LHKKNKKKKKKT 96
           D   FPRGGG  LTQRE  E  A+++ E EA++ G             +  K K K++K 
Sbjct: 75  DEIDFPRGGGTGLTQREVRE--AQLEGEAEAMDDGNDEDRERQKETEVIKDKGKAKRRKL 132

Query: 97  ERKANETVDDLGSLFGDGISGKLPRYANKI---TLKNISAGMKLWGVVAEVNEKDLVICL 153
           ER  N  V             ++P+ A ++     K +  G K+   V +V   ++ + L
Sbjct: 133 ERALNGEVK---------AKNQIPKDAFRVEHLNYKRLIPGTKVLCQVVQVRPLEVTVSL 183

Query: 154 PGGLRG--------------LARAADALDPILDNEIEANEDNL--------LPTIFHVGQ 191
           P  L G              L +A +      + E    ED L        LP +FH GQ
Sbjct: 184 PNQLLGHIPITNISSEFTARLEKAGEEDSDEEEEEESDEEDELAADKGLPGLPALFHTGQ 243

Query: 192 LVSCIVLQL-------------DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTA 238
            +  +V                + D+     R++ LS+    + +G++   ++ G VL A
Sbjct: 244 YLIAVVTSTAVSDPTKPKLAGREGDETVRSSRRVELSVEPEKVNEGIAKGDLKRGFVLPA 303

Query: 239 YVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSS 298
            V  +E+ GY L FGLP  + FLP  +  + +   +  G ++   +  I    + V ++ 
Sbjct: 304 AVHDVEEKGYTLSFGLPPLSAFLPFADAKKLAPKGLHVGQVVVCRLTKIHSNERTVSVAV 363

Query: 299 DPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
           +   ++      +   SI  L+P  +V   V +++  G+ + F  Y+ GT+D FHL  + 
Sbjct: 364 EWADIASTTLDSVS--SITSLLPLQIVPALVTAVMPQGLNVKFHGYYDGTIDRFHLPIS- 420

Query: 359 PTTNWKNDYNQHKKVNARILF--VDPTSRAVGLTLNPYLLHNRAPPSHVK------VGDI 410
              +    Y + +KV  RIL+  +  T +   L++   ++  R   S VK      V   
Sbjct: 421 AGEDIAQHYKEGQKVKGRILWDSISQTPKKFALSMREEVV--RLDESRVKALQSEWVVGR 478

Query: 411 YDQSKVVRVDRGLGLLLDI-PSTPVSTPAYVTISDVAEEEVRKLEKK--YKEGSCVRVRI 467
             Q+K+V VD   GL  +I    PVS  A+V IS + ++ +  + K   ++ G+    R+
Sbjct: 479 KCQAKIVAVDEEWGLTCEIVGDEPVS--AFVHISRITDDHLSTIPKAGPWQIGTVHPARV 536

Query: 468 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
           +    L+ L    L+ S          DV+ G  VKG V  +      V   G V  +  
Sbjct: 537 VSLSPLDSLVQLSLQPSILSQSFLRVQDVRVGEEVKGTVKVLRDNALFVSIGGSVDGVVW 596

Query: 528 LPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATD 585
             H ++  +  P KKFK G  +  RV  V  +  R+ +T KK L+++   ++++ +EA  
Sbjct: 597 PLHYADIRLKHPEKKFKPGQAVKARVFSVDPEKNRVVLTLKKQLLQTPHPLVTTLSEAKP 656

Query: 586 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL--GLDPGCEPSSMYHVGQVVKCRIMSS 643
            L+T   +TK+      V F+ GV+   P +E         +   M+ +G+VV  RI+S 
Sbjct: 657 GLVTDATVTKVLDKSVLVDFFGGVRALVPAAEAAEAFTDVADLGRMFPLGKVVAVRILSV 716

Query: 644 IPASRRINLSFMMKPTRVSED------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
             AS RI  S        +        + + +G+L +G +  +    +V+  +A+G  K 
Sbjct: 717 DRASGRIVASARQASAPAASTSSSSAIESIDVGTLTTGTISALHETNLVLS-LAEGGIKA 775

Query: 698 TIPTEHLADH 707
            +    LA H
Sbjct: 776 LLAYPTLARH 785



 Score =  144 bits (362), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 170/320 (53%), Gaps = 17/320 (5%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPH---LYGRVHFTELKN--ICVSDPLSG-YDEGQFVK 1313
            G +  GR++  LS    LV  +G     L GRV  TEL +    VS+     +  G  V+
Sbjct: 854  GALYPGRVTSSLSSGVVLVQLVGSRNASLRGRVALTELSDDYSLVSEKGEALFPVGTNVQ 913

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
              VL      R    ++LSLR+S   +S+ +    S   D P   +  ++DL P   V+G
Sbjct: 914  AVVLAKDDEQR---RLDLSLRAS-RVLSAQDKPLASPPADAP---VTSVDDLKPGSKVRG 966

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
            +VKNV + G F+ L R + A+VL+  L D YV+  +  F +G+LV G++LSV+ +S ++E
Sbjct: 967  FVKNVANAGVFVELGRDITARVLIKELFDEYVKEWKPRFKVGELVEGKILSVDKVSSQIE 1026

Query: 1434 VTLKTSDSRTASQSEINNLS----NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
            ++ ++S       S   ++S    NL  G +V G IKRV++YG+FI ++ + + GLCH S
Sbjct: 1027 MSFRSSAVVKKDASAPTSVSLADANLSRGQVVRGTIKRVQNYGVFIRLDESGVEGLCHKS 1086

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1549
            ++ +D   + + + R G+KVK  +L VD EK+++SLG+K+   +      Q    +E DE
Sbjct: 1087 KIVDDEKRSWKEVVREGQKVKAVVLSVDLEKKKLSLGLKNVDLQAMLAQAQAGGSDEDDE 1146

Query: 1550 AIEEVGSYNRSSLLENSSVA 1569
              E       +S L  +  A
Sbjct: 1147 MSEAEAPVASTSKLPATKAA 1166



 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 182/831 (21%), Positives = 334/831 (40%), Gaps = 98/831 (11%)

Query: 177  ANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
            A+   L P   HVGQ+V C + ++  +++ +     W  +  + L    S+ ++    ++
Sbjct: 329  ADAKKLAPKGLHVGQVVVCRLTKIHSNERTVSVAVEWADIASTTLDSVSSITSLLPLQIV 388

Query: 237  TAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDV----KPGLLLQGVV--RSIDRT 290
             A V ++   G  + F    + G + R +L  ++G D+    K G  ++G +   SI +T
Sbjct: 389  PALVTAVMPQGLNVKFH-GYYDGTIDRFHLPISAGEDIAQHYKEGQKVKGRILWDSISQT 447

Query: 291  RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN-GVMLSFL--TYFTG 347
             K   LS   + V +     +K +  + +V G     ++ ++ E  G+    +     + 
Sbjct: 448  PKKFALSMREEVV-RLDESRVKALQSEWVV-GRKCQAKIVAVDEEWGLTCEIVGDEPVSA 505

Query: 348  TVDIFHLQNTFPTTNWKNDYNQHKKVN-ARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK 406
             V I  + +   +T  K    Q   V+ AR++ + P    V L+L P +L      S ++
Sbjct: 506  FVHISRITDDHLSTIPKAGPWQIGTVHPARVVSLSPLDSLVQLSLQPSILSQ----SFLR 561

Query: 407  VGDIYDQSKV---VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
            V D+    +V   V+V R   L + I     S    V     A+  ++  EKK+K G  V
Sbjct: 562  VQDVRVGEEVKGTVKVLRDNALFVSIGG---SVDGVVWPLHYADIRLKHPEKKFKPGQAV 618

Query: 464  RVRILGFRHLEGLATGILKASAFEG---LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG 520
            + R+      +      LK    +    LV T S+ KPG+V    V  V     +V F G
Sbjct: 619  KARVFSVDPEKNRVVLTLKKQLLQTPHPLVTTLSEAKPGLVTDATVTKVLDKSVLVDFFG 678

Query: 521  GVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            GV+AL P    +E   ++   G+ F +G  +  R+L V   S RI  + ++    +    
Sbjct: 679  GVRALVPAAEAAEAFTDVADLGRMFPLGKVVAVRILSVDRASGRIVASARQASAPAASTS 738

Query: 577  LSSYAEATD-RLITHGWITKIEKHGCFVRFY-NGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
             SS  E+ D   +T G I+ + +    +     G++       L    G    ++   G 
Sbjct: 739  SSSAIESIDVGTLTTGTISALHETNLVLSLAEGGIKALLAYPTLARHRGVSVETLK--GD 796

Query: 635  VVKCRIMSS-IPASRRINLSFM---MKPTRVSED------------------DLVKLGSL 672
            + K + +   +  S+ ++  F+   + P++ +                    D +++G+L
Sbjct: 797  LAKGQKLEDLVVVSKNVDKGFVIVGLVPSKSAAATAAASSSAASTSQPQLTFDRLEVGAL 856

Query: 673  VSG-VVDVVTPNAVVVYVIAKGYS--KGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 729
              G V   ++   V+V ++    +  +G +    L+D     +     + P     Q +V
Sbjct: 857  YPGRVTSSLSSGVVLVQLVGSRNASLRGRVALTELSDDYSLVSEKGEALFPVGTNVQAVV 916

Query: 730  L--DNESSNLLLSAKYSLINSAQ-----QLPSDA-----SHIHPNSVVHGYVCNIIETGC 777
            L  D+E   L LS + S + SAQ       P+DA       + P S V G+V N+   G 
Sbjct: 917  LAKDDEQRRLDLSLRASRVLSAQDKPLASPPADAPVTSVDDLKPGSKVRGFVKNVANAGV 976

Query: 778  FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            FV     +T      +  D    +    + VG+ V   IL V+  + +I +S + S    
Sbjct: 977  FVELGRDITARVLIKELFDEYVKEWKPRFKVGELVEGKILSVDKVSSQIEMSFRSSAVVK 1036

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
             DAS      L +  ++                    G V+ G +    ++GV +  +E 
Sbjct: 1037 KDASAPTSVSLADANLSR-------------------GQVVRGTIKRVQNYGVFIRLDE- 1076

Query: 898  SDVYGFITHHQLAG-------ATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            S V G     ++           V  G  ++A +L V   ++ + L LK V
Sbjct: 1077 SGVEGLCHKSKIVDDEKRSWKEVVREGQKVKAVVLSVDLEKKKLSLGLKNV 1127



 Score = 67.4 bits (163), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 98/445 (22%), Positives = 185/445 (41%), Gaps = 46/445 (10%)

Query: 1066 LVQAEITEIKPLELRLKFGIGFHG---RIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            +V A +T + P  L +KF   + G   R H+        +  E++  ++K GQ V  RI+
Sbjct: 387  IVPALVTAVMPQGLNVKFHGYYDGTIDRFHLP------ISAGEDIAQHYKEGQKVKGRIL 440

Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
              S     KK   + LS++  ++ + E   K L  + +  +G++    +  VD EW L  
Sbjct: 441  WDSISQTPKK---FALSMREEVVRLDESRVKAL--QSEWVVGRKCQAKIVAVDEEWGLTC 495

Query: 1183 -ISRHLKAQLFILDSAYEPSELQEFQRR--FHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
             I        F+  S      L    +   + IG      V+S++    L++L L+P   
Sbjct: 496  EIVGDEPVSAFVHISRITDDHLSTIPKAGPWQIGTVHPARVVSLSPLDSLVQLSLQP--S 553

Query: 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1299
             +S   + + +      +  G+ V G + K+L     L V IG  + G V      +I +
Sbjct: 554  ILSQSFLRVQD------VRVGEEVKGTV-KVLRD-NALFVSIGGSVDGVVWPLHYADIRL 605

Query: 1300 SDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL 1359
              P   +  GQ VK +V  +         V L+L+  L              + TP   +
Sbjct: 606  KHPEKKFKPGQAVKARVFSVDPEKN---RVVLTLKKQL--------------LQTPHPLV 648

Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE--KEFPIGKL 1417
              + +  P ++    V  V  K   +     + A V  +  ++ + +  +  + FP+GK+
Sbjct: 649  TTLSEAKPGLVTDATVTKVLDKSVLVDFFGGVRALVPAAEAAEAFTDVADLGRMFPLGKV 708

Query: 1418 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1477
            VA R+LSV+  S R+  + + + +  AS S  + + ++ VG +  G I  +    L +++
Sbjct: 709  VAVRILSVDRASGRIVASARQASAPAASTSSSSAIESIDVGTLTTGTISALHETNLVLSL 768

Query: 1478 ENTNLVGLCHVSELSEDHVDNIETI 1502
                +  L     L+     ++ET+
Sbjct: 769  AEGGIKALLAYPTLARHRGVSVETL 793



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 18/193 (9%)

Query: 1087 FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKP-----DMKKSFLWELSIK 1141
              GR+ +TE++DD S V E   + F +G  V A ++AK ++       ++ S +     K
Sbjct: 882  LRGRVALTELSDDYSLVSEKGEALFPVGTNVQAVVLAKDDEQRRLDLSLRASRVLSAQDK 941

Query: 1142 PSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201
            P     S      +    D+  G +V G+V  V N    + + R + A++ I +   E  
Sbjct: 942  P---LASPPADAPVTSVDDLKPGSKVRGFVKNVANAGVFVELGRDITARVLIKELFDE-- 996

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF----QDGISDKTVDISNDNMQTFI 1257
             ++E++ RF +G+ V G +LS++K    + +  R      +D  +  +V +++ N+    
Sbjct: 997  YVKEWKPRFKVGELVEGKILSVDKVSSQIEMSFRSSAVVKKDASAPTSVSLADANLS--- 1053

Query: 1258 HEGDIVGGRISKI 1270
              G +V G I ++
Sbjct: 1054 -RGQVVRGTIKRV 1065



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
            +++D+     V+G VK +     F+ +   +D  V   + +D  ++ PEK+F  G+ V  
Sbjct: 561  RVQDVRVGEEVKGTVKVLRDNALFVSIGGSVDGVVWPLHYADIRLKHPEKKFKPGQAVKA 620

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
            RV SV+P   RV +TLK    +T     +  LS    G +    + +V    + +     
Sbjct: 621  RVFSVDPEKNRVVLTLKKQLLQT-PHPLVTTLSEAKPGLVTDATVTKVLDKSVLVDFFG- 678

Query: 1481 NLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRI 1523
             +  L   +E +E   D  ++  ++  G+ V V+IL VD+   RI
Sbjct: 679  GVRALVPAAEAAEAFTDVADLGRMFPLGKVVAVRILSVDRASGRI 723



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 99/472 (20%), Positives = 189/472 (40%), Gaps = 68/472 (14%)

Query: 127  TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTI 186
            TL     G+     V +V +K +++   GG+R L  AA+A +   D          L  +
Sbjct: 650  TLSEAKPGLVTDATVTKVLDKSVLVDFFGGVRALVPAAEAAEAFTDVAD-------LGRM 702

Query: 187  FHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 246
            F +G++V+  +L +D     I       S   +      ++E++  G + T  + ++ + 
Sbjct: 703  FPLGKVVAVRILSVDRASGRIVASARQASAPAASTSSSSAIESIDVGTLTTGTISALHET 762

Query: 247  GYILHFGLPSFTGFLPRNNLAENSGIDVKP--GLLLQG--------VVRSIDRTRKVVYL 296
              +L          L    LA + G+ V+   G L +G        V +++D+   +V L
Sbjct: 763  NLVLSLAEGGIKALLAYPTLARHRGVSVETLKGDLAKGQKLEDLVVVSKNVDKGFVIVGL 822

Query: 297  SSDPDTVSKCVTKDLKG------ISIDLLVPGMMVSTRVQSILENGVMLSFL-----TYF 345
                   +               ++ D L  G +   RV S L +GV+L  L        
Sbjct: 823  VPSKSAAATAAASSSAASTSQPQLTFDRLEVGALYPGRVTSSLSSGVVLVQLVGSRNASL 882

Query: 346  TGTVDIFHLQNTFPTTNWKND--YNQHKKVNARILFVDPTSRAVGLTLNPYLLHNR---- 399
             G V +  L + +   + K +  +     V A +L  D   R + L+L    + +     
Sbjct: 883  RGRVALTELSDDYSLVSEKGEALFPVGTNVQAVVLAKDDEQRRLDLSLRASRVLSAQDKP 942

Query: 400  --APPSHVKVGDIYDQSKVVRVDRGL-------GLLLDIPSTPVSTPAYVTISDVAEEEV 450
              +PP+   V  + D     +V RG        G+ +++        A V I ++ +E V
Sbjct: 943  LASPPADAPVTSVDDLKPGSKV-RGFVKNVANAGVFVELGR---DITARVLIKELFDEYV 998

Query: 451  RKLEKKYKEGSCVRVRILGFRHLEG------LATGILK--ASAFEGLVFTHSDVKPGMVV 502
            ++ + ++K G  V  +IL    +         ++ ++K  ASA   +    +++  G VV
Sbjct: 999  KEWKPRFKVGELVEGKILSVDKVSSQIEMSFRSSAVVKKDASAPTSVSLADANLSRGQVV 1058

Query: 503  KGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEF---------EIVKPGKKFK 544
            +G +  V ++G  ++    GV+ LC   H S+          E+V+ G+K K
Sbjct: 1059 RGTIKRVQNYGVFIRLDESGVEGLC---HKSKIVDDEKRSWKEVVREGQKVK 1107


>gi|70928557|ref|XP_736472.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56511034|emb|CAH85244.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 274

 Score =  162 bits (410), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 93/274 (33%), Positives = 152/274 (55%), Gaps = 29/274 (10%)

Query: 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1732
            N S +WI Y+A+ L   ++++AR+IAERAL+TI+I    EKLNI++ Y N+E  YG+   
Sbjct: 3    NKSTIWISYIAYYLEKGNIQEARNIAERALKTIDIHLIEEKLNIYLCYINMECAYGDNLN 62

Query: 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792
            +    +F+RAL   + K ++L  + + +  ++     EL  + IKKFK+S K+W R ++ 
Sbjct: 63   D----IFKRALLVNNEKSIYLHTMNILKMNKKYNELKELCEEAIKKFKYSKKIWTRYLEL 118

Query: 1793 LLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850
            L      +E    ++ ++L +LP+ KH+  I   A  E+K    +RG++ FE ++ EYPK
Sbjct: 119  LHNTLNDEEYAHNILLKSLHALPKRKHLNIIINAARFEYKYSNIERGKNYFEKLIQEYPK 178

Query: 1851 RTDLWSIYLDQEIR-----------------------LGDVDLIRGLFERAISLSLPPKK 1887
            R+D+W  YLD  I                        L ++  IR +FER  S+    + 
Sbjct: 179  RSDIWFTYLDIHINSLTKGKKNENDDENKKKKIKKLTLNELQFIRNIFERFSSIKFKTRV 238

Query: 1888 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
            MK +F K+L +EK+ G     + V++KA +YVES
Sbjct: 239  MKMIFTKWLLFEKNHGSVNTQKMVQKKAYDYVES 272


>gi|242223612|ref|XP_002477408.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723046|gb|EED77394.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1088

 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 157/587 (26%), Positives = 264/587 (44%), Gaps = 117/587 (19%)

Query: 1018 GQSVIATVMALPSSSTAGRL-------LLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
            GQ + A ++   S ST  R        +L L       +  SK +  + +Y VG++++A 
Sbjct: 230  GQKIKARILYDVSPSTPPRFALSVVEHVLKLSPKHAAGSDGSKDSSLQDAYPVGAILEA- 288

Query: 1071 ITEIKPLELRLKFGI------GFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAK 1124
               +K + +  + G+      G  G +HI++V+D+    +     ++K+G    AR+   
Sbjct: 289  ---VKVVRVEAERGLVVEISSGLEGFVHISQVSDEHVPSLSPSSGHWKVGTVHKARVTGH 345

Query: 1125 SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTIS 1184
                        +LS +PS+L       +   +  +V +G+ + G V ++      +++S
Sbjct: 346  -----FHLDGCLQLSFRPSVL------EQKFLQVGEVQVGELIKGTVKRLTESALFVSMS 394

Query: 1185 RHLKAQLFILDSAYEPSELQEFQRRFHIG--------KAVTGH----------------- 1219
              +     +  + Y    L+  QRRF  G        KAV                    
Sbjct: 395  GSVDG--VVWPNHYADIALKHPQRRFRPGVVAELQKDKAVITLQPTQVRALLSLNNLANR 452

Query: 1220 ----------------------VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
                                  V+S N EK  + +  +P +    +  +   + N+ T I
Sbjct: 453  RGVSLTQLRTSLKTDEKLQDLVVVSRNPEKGFVLVATKPKE---KESLLQKGSLNLDT-I 508

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ------- 1310
              G +VGGR+  +  G  G +V++   + G +H T        D    +D G+       
Sbjct: 509  QVGQVVGGRV--LRHGRQGALVKLTSSISGTLHPT--------DTCDDFDSGRAFPPVDS 558

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDV--DTPGKHLEKIEDLSPN 1368
             +K  VL I R  R     +L+L        ST  S L  D   D     ++ + DL   
Sbjct: 559  ILKAVVLSIDRDKR-----QLTL--------STRPSRLYPDQAKDVKDHEVDGVSDLKVG 605

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
              V+G++KNV   G F+ML R +DA+V +  L D YV+  +  F   +LV GRVLSV+  
Sbjct: 606  QTVRGFIKNVAEHGIFVMLGRHIDARVQIKELFDEYVKDWKSHFAANQLVKGRVLSVDFD 665

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
             K+VE+T ++ D +  ++S+ + L++L  G  V G++K++E YGLFI I  + L GLCH 
Sbjct: 666  KKQVEMTFRSGDLKRDARSQ-STLADLSEGQKVDGRVKKIEDYGLFIEIAGSKLSGLCHK 724

Query: 1489 SELSEDHVDNIETI---YRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532
            SELS++   ++      +R  ++VK  IL +D+EKRRIS G+K SYF
Sbjct: 725  SELSDNKDADVTLALRSFRENDQVKAVILSIDREKRRISFGLKPSYF 771



 Score =  140 bits (354), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/201 (38%), Positives = 127/201 (63%), Gaps = 7/201 (3%)

Query: 1619 TDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1678
            + E  T D++  R  K+++++E EQ++ A     +    P +  +FER++  SPNSS++W
Sbjct: 884  SSEENTDDDEQGRKKKRRKRKEIEQDLTAD----MHTKMPESNTDFERVLLGSPNSSYLW 939

Query: 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1738
            I+YM+F L +++VEKAR IA RAL+TIN REE EKLN+WVA  NLEN +G   +E++   
Sbjct: 940  IQYMSFQLQISEVEKAREIARRALRTINFREEQEKLNVWVALLNLENSFGT--DESLEAT 997

Query: 1739 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ 1798
            F+ A ++ D K +HL L  + +++E+++ A+E   +  KKF  S KVW    +  LK+  
Sbjct: 998  FKDAARHNDSKTIHLRLANILDQSEKHEKAEEQYKRTCKKFSQSSKVWTLFGEHYLKRGM 1057

Query: 1799 -EGVQAVVQRALLSLPRHKHI 1818
             E  + ++ R+L SL + K +
Sbjct: 1058 LEEARKLLPRSLQSLEKRKRM 1078



 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 204/449 (45%), Gaps = 59/449 (13%)

Query: 169 PILDNEIEANEDNLLPTIFHV---GQLVSCIV-------------LQLDDDKKEIGKRKI 212
           P  D E +    + +P +FH+   GQ V  +V             L    D+ +   R+I
Sbjct: 16  PPSDEEDDGPSKSRIPDLFHIFPAGQYVRAVVSAVHPPGATDASVLGRARDEVQKASRRI 75

Query: 213 WLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLP-----RNNLA 267
            LSL    +   +S   ++ G  L+A VKSIEDHGYIL  G+P  +GFL      +    
Sbjct: 76  ELSLIPEKVNASVSKSDLRAGFTLSAAVKSIEDHGYILDLGIPDVSGFLSFKEAKKGPFG 135

Query: 268 ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVST 327
           +++ + V  G L+   V  I    +   +S D  +V      ++   S+  ++PG +V +
Sbjct: 136 DDNKLPV--GRLIDVCVVKITGNGRTCTVSVDSASVRDASLSEVA--SVTSILPGTLVQS 191

Query: 328 RVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF-VDP-TSR 385
            V +++ +G+ L  L YF GT+D FHL+      + + +Y   +K+ ARIL+ V P T  
Sbjct: 192 LVTAVVPDGLNLQVLGYFVGTIDQFHLR----AGDVEENYKVGQKIKARILYDVSPSTPP 247

Query: 386 AVGLTLNPYLLHNRAPPSHVK---------------VGDIYDQSKVVRVDRGLGLLLDIP 430
              L++  ++L  +  P H                 VG I +  KVVRV+   GL+++I 
Sbjct: 248 RFALSVVEHVL--KLSPKHAAGSDGSKDSSLQDAYPVGAILEAVKVVRVEAERGLVVEIS 305

Query: 431 STPVSTPAYVTISDVAEEEVRKLEKK---YKEGSCVRVRILGFRHLEGLATGILKASAFE 487
           S       +V IS V++E V  L      +K G+  + R+ G  HL+G      + S  E
Sbjct: 306 S---GLEGFVHISQVSDEHVPSLSPSSGHWKVGTVHKARVTGHFHLDGCLQLSFRPSVLE 362

Query: 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547
                  +V+ G ++KG V  +      V   G V  +    H ++  +  P ++F+ G 
Sbjct: 363 QKFLQVGEVQVGELIKGTVKRLTESALFVSMSGSVDGVVWPNHYADIALKHPQRRFRPGV 422

Query: 548 ELVFRVLGVKSKRITVTHKKTLVKSKLAI 576
                V  ++  +  +T + T V++ L++
Sbjct: 423 -----VAELQKDKAVITLQPTQVRALLSL 446



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 122/261 (46%), Gaps = 14/261 (5%)

Query: 219 SLLYKG-LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVK 275
           SLL KG L+L+T+Q G V+   V      G ++     S +G L   +  ++  SG    
Sbjct: 496 SLLQKGSLNLDTIQVGQVVGGRVLRHGRQGALVKL-TSSISGTLHPTDTCDDFDSGRAFP 554

Query: 276 P-GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDL---LVPGMMVSTRVQS 331
           P   +L+ VV SIDR ++ + LS+ P  +     KD+K   +D    L  G  V   +++
Sbjct: 555 PVDSILKAVVLSIDRDKRQLTLSTRPSRLYPDQAKDVKDHEVDGVSDLKVGQTVRGFIKN 614

Query: 332 ILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL 391
           + E+G+ +    +    V I  L + +   +WK+ +  ++ V  R+L VD   + V +T 
Sbjct: 615 VAEHGIFVMLGRHIDARVQIKELFDEY-VKDWKSHFAANQLVKGRVLSVDFDKKQVEMTF 673

Query: 392 NPYLLHNRAPPSHVKVGDIYDQSKV---VRVDRGLGLLLDIPSTPVSTPAYVT-ISDVAE 447
               L  R   S   + D+ +  KV   V+     GL ++I  + +S   + + +SD  +
Sbjct: 674 RSGDL-KRDARSQSTLADLSEGQKVDGRVKKIEDYGLFIEIAGSKLSGLCHKSELSDNKD 732

Query: 448 EEVRKLEKKYKEGSCVRVRIL 468
            +V    + ++E   V+  IL
Sbjct: 733 ADVTLALRSFRENDQVKAVIL 753


>gi|67587680|ref|XP_665268.1| rrp5 protein [Cryptosporidium hominis TU502]
 gi|54655854|gb|EAL35037.1| rrp5 protein [Cryptosporidium hominis]
          Length = 410

 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 162/298 (54%), Gaps = 36/298 (12%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            P T D+FERL+ +  + S +WI+YM++ L + D++KAR +AER+L+ I+++EE E+ NIW
Sbjct: 106  PSTIDDFERLLITHRDVSSLWIRYMSYYLDLEDLDKARMVAERSLKQISVKEEMERWNIW 165

Query: 1718 VAYFNLENEYGNP----------------PEEAVVK----VFQRAL-QYCDPKKVHLALL 1756
            +AY N+E  YG                   E+ + K    +  RAL    D KK+++ + 
Sbjct: 166  IAYINMEIAYGKNELLTSKGENNISSLGGKEDGIPKNVRQILDRALMNVTDQKKLYIQIF 225

Query: 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPR 1814
                R  + +    LL + +KKF+ S K+W+  +  L +   Q++    V+Q++L S+ +
Sbjct: 226  SSLRRHSKEEQGLALLEEGLKKFQTSRKLWVTYLTCLYESDNQKKARDEVIQKSLKSVSK 285

Query: 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--------- 1865
             K ++ I+  A LEF+ G  +RGR++FE +L E  KR DLWS Y D   +L         
Sbjct: 286  DKVVRLITDIARLEFEYGNINRGRTIFENLLEENSKRMDLWSQYFDILTKLCSKDDPKSN 345

Query: 1866 ----GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919
                  +++ R +F   I  +  P+ MK +F ++L +EK  G  +  ++V+  A+ YV
Sbjct: 346  SSMADHIEMARSIFSSCIEKNFKPRSMKMIFTRWLSFEKEFGSLQTQKHVQDLAINYV 403


>gi|255595431|ref|XP_002536303.1| hypothetical protein RCOM_1962080 [Ricinus communis]
 gi|223520127|gb|EEF26080.1| hypothetical protein RCOM_1962080 [Ricinus communis]
          Length = 109

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 94/110 (85%), Gaps = 1/110 (0%)

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            GYVKNV  KGCFI LSRK+DAK+LLSNLSD +V SPE+EFPIGKLV GRVLSVEPLSKRV
Sbjct: 1    GYVKNVAPKGCFIFLSRKIDAKILLSNLSDEFVVSPEEEFPIGKLVTGRVLSVEPLSKRV 60

Query: 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1482
            EVTLK  ++++  +SE+N+LS L+VGD   G+IKRVE YGLFI I++TNL
Sbjct: 61   EVTLK-KNAKSTGKSELNDLSRLNVGDTASGRIKRVEPYGLFIAIDHTNL 109


>gi|340387142|ref|XP_003392067.1| PREDICTED: protein RRP5 homolog, partial [Amphimedon queenslandica]
          Length = 209

 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 137/207 (66%), Gaps = 3/207 (1%)

Query: 1710 ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1769
            E+EKLN+WV + NLEN YG+   E++ +VF+RALQ  D  +++  L+ +Y  + + + AD
Sbjct: 1    EDEKLNLWVGFLNLENMYGDS--ESLDQVFKRALQQNDQFEIYTRLIDIYVTSNKPESAD 58

Query: 1770 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828
            +L   M KKF  + +VW +  + L++Q + +  + ++QR+  SL + +H+    Q A LE
Sbjct: 59   QLYQIMCKKFSSNIQVWSQYGRFLMEQGKADLARKILQRSFKSLTKKQHVDITKQFAQLE 118

Query: 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888
            FK G  +RG ++FE ++S YP++ D+WS+Y+D   + G++D +R +FERA+SL L   K 
Sbjct: 119  FKYGEMERGCTLFENLVSSYPRKVDIWSVYIDMLTKKGEMDRVRDVFERAVSLKLSSVKK 178

Query: 1889 KFLFKKYLEYEKSVGEEERIEYVKQKA 1915
            +FL+K+Y+E+E+  G +  +E V+ K+
Sbjct: 179  QFLYKRYIEFERKHGTQSLVETVQAKS 205


>gi|300123256|emb|CBK24529.2| unnamed protein product [Blastocystis hominis]
          Length = 967

 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 169/289 (58%), Gaps = 8/289 (2%)

Query: 1636 KEKEEREQEIRAAEERLLEKDA-PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKA 1694
            K  + RE EI A E  L  + A P +  +FERL+   P SS +WI+Y ++ LS+ D  KA
Sbjct: 677  KRPQLREAEIAAKERSLASQSAQPASEADFERLLVGQPTSSELWIRYASWFLSLGDAAKA 736

Query: 1695 RSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLA 1754
            R++  RALQ++    E+E+ N+W+A  NLE+E+G+  E A+  V++ A Q  +P++  L 
Sbjct: 737  RAVLRRALQSVPGHLEDERANLWLALLNLESEFGD--EAALRDVYKEARQAMEPRRAGLH 794

Query: 1755 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLS 1811
            L  L E  ++      +  ++ K+ +   KVWL   +  LKQ   ++ G    ++RA  +
Sbjct: 795  LAALLEAKQKWAEVYSVWKQLAKENRGDVKVWLGWCECFLKQGLPRESG--ETLRRAQEA 852

Query: 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1871
            + R +  + +S  AIL ++    D+GR++FE ++S    R DLW++Y+DQE + G+V+ +
Sbjct: 853  VGRSEKARLLSGYAILLYRYKQRDQGRTIFEDLVSSLKNRLDLWNLYVDQETKAGNVEYV 912

Query: 1872 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
            RGLF R + L +     K +FKK++ +E + G+EE    V++   +Y++
Sbjct: 913  RGLFGRMVELKMSVNSAKRVFKKWIAFEDAHGDEEHAAKVEEIVQQYID 961


>gi|355709767|gb|AES03702.1| programmed cell death 11 [Mustela putorius furo]
          Length = 398

 Score =  157 bits (396), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 183/381 (48%), Gaps = 39/381 (10%)

Query: 54  FPRGGGHSLTQRER--------DEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVD 105
           FPRGG     + E+        D +  ++  E E+ +R   +K   K KK + +  E+  
Sbjct: 8   FPRGGTRKTHKSEKALQKSVEQDNLF-DLSTEEESTKRKKSQKGPAKTKKLKTEKRESSK 66

Query: 106 DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
            +   F            N + ++++  GM++ G V EVNE +LVI LP GLRG  +  +
Sbjct: 67  SIREKF---------EILNILNIESLCEGMRILGCVKEVNELELVISLPNGLRGFVQVTE 117

Query: 166 ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
             D      NE  A E+ +     LP +F  G LV C+V  +   ++  GK+ + LSL  
Sbjct: 118 ICDAYTKKLNEQVAQEEPVKDLVGLPELFSPGMLVRCVVSSVGITER--GKKSVKLSLNP 175

Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
             + + LS E ++ GM+LT  V S+EDHGY++  G+     FLP     E     N G  
Sbjct: 176 RNVNEVLSAEALKPGMLLTGTVSSLEDHGYVVDIGVSGARAFLPLQKAQEYIRQKNKGAK 235

Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
           +K G  L  ++  +     VV LS     VS  +  + +  +++ L+PG++V  +VQ + 
Sbjct: 236 LKVGQYLHCIIEEVKGNGGVVGLSIGHSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVT 295

Query: 334 ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
             G+ L+FL++FTG VD  HL      T + N     + V A +L V P +RAV L+L P
Sbjct: 296 PVGLTLNFLSFFTGLVDFMHLDPKKAGTYFSN-----QAVRACVLCVHPRTRAVRLSLRP 350

Query: 394 YLLH--NRAPPSHVKVGDIYD 412
             L      P S   +G + D
Sbjct: 351 VFLQPGRSLPRSCQHLGAVLD 371


>gi|302776688|ref|XP_002971494.1| hypothetical protein SELMODRAFT_412242 [Selaginella moellendorffii]
 gi|300160626|gb|EFJ27243.1| hypothetical protein SELMODRAFT_412242 [Selaginella moellendorffii]
          Length = 606

 Score =  156 bits (395), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 139/219 (63%), Gaps = 19/219 (8%)

Query: 1351 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1410
            D+  PG+    +E       + G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P +
Sbjct: 201  DLKRPGRGKMGLE-------LSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAE 253

Query: 1411 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1470
             FP GK+++GR+LS++PLS  +E++L  + S+ +S            G+IV G+I  +E+
Sbjct: 254  MFPPGKVISGRILSIKPLSGHIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEA 308

Query: 1471 YGLFITIENTNLV------GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1524
            +G+FI++  +++        LCHVSE+S D + ++ T+Y+ G+ V+VKILKVD E +RIS
Sbjct: 309  FGIFISLAESDVFLVCAPGCLCHVSEVSYDFIQDLSTLYKVGQWVQVKILKVDAETKRIS 368

Query: 1525 LGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1563
            LGMK+SY     +  +  +EE S+  +  + S +  +L+
Sbjct: 369  LGMKASYLTEPMEE-EAINEEPSNTNVPTIVSIHARTLV 406



 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 154/349 (44%), Gaps = 49/349 (14%)

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
            +LS++PS L  ++    ++  E  V+I Q V  YV +V + WA L +S HLK  LFILD+
Sbjct: 75   DLSLRPSELAGNDAACSVITFE-TVTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDT 133

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
            + +PSEL+ F+ RF +G     H+      +           D +      +S +    F
Sbjct: 134  SDDPSELERFKERFKVGDPFQCHIRKRGPVRPTDYTSFCWCWDILCKADGKVSENQ---F 190

Query: 1257 IHEGDIVG---------GRISKILSGV------GGLVVQIGPHLYGRVHFTELKNICVSD 1301
            I+ G +           G++   LSG        G  V + P L  R+    L N  V +
Sbjct: 191  IYRGTVRKVLDLKRPGRGKMGLELSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQN 250

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P   +  G+ +  ++L I + + G  H+E+SL       ++T S D S            
Sbjct: 251  PAEMFPPGKVISGRILSI-KPLSG--HIEMSL-------TATTSQDSS-----------G 289

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRK----LDAKVLLSNLSD---GYVESPEKEFPI 1414
             +      IV G + N+ + G FI L+      + A   L ++S+    +++     + +
Sbjct: 290  WKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGCLCHVSEVSYDFIQDLSTLYKV 349

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN--LSNLHVGDIV 1461
            G+ V  ++L V+  +KR+ + +K S      + E  N   SN +V  IV
Sbjct: 350  GQWVQVKILKVDAETKRISLGMKASYLTEPMEEEAINEEPSNTNVPTIV 398


>gi|302811444|ref|XP_002987411.1| hypothetical protein SELMODRAFT_426255 [Selaginella moellendorffii]
 gi|300144817|gb|EFJ11498.1| hypothetical protein SELMODRAFT_426255 [Selaginella moellendorffii]
          Length = 378

 Score =  156 bits (395), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 126/185 (68%), Gaps = 12/185 (6%)

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            V G+VKNVT KGCF++LS  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 160  VHGFVKNVTEKGCFVILSPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 219

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV------G 1484
             +E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++        
Sbjct: 220  HIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLPESHVFLVCAPGC 274

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1544
            LCHVSE+S + + ++ T+Y+ G+ V+VKILKVD E +R+SLGMK+SY   + D ++   E
Sbjct: 275  LCHVSEVSYNFIQDLSTLYKVGQWVQVKILKVDAETKRVSLGMKASYLTPE-DGIKPMEE 333

Query: 1545 EESDE 1549
            E  +E
Sbjct: 334  EAINE 338



 Score =  110 bits (276), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 142/313 (45%), Gaps = 72/313 (23%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            V+I Q V  YV +V + WA L +S HLK  LFILD++  PSEL+ F+ RF +G     H+
Sbjct: 46   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDNPSELERFKERFKVGDPFQCHI 105

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
             S+N E+K + L L P       KT D      + F  +GD++G RI+++ +GVGG  VQ
Sbjct: 106  RSVNHERKQVDLSLHP-------KTRD------EQF-KKGDLLGRRITRVFAGVGGHTVQ 151

Query: 1281 ------------------------IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
                                    + P L  R+    L N  V +P   +  G+ +  ++
Sbjct: 152  GRWESLGKVHGFVKNVTEKGCFVILSPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRI 211

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L I      + H+E+SL       ++T S D S             +      IV G + 
Sbjct: 212  LSIEPL---SGHIEMSL-------TATTSQDSS-----------GWKKFGAGEIVSGRIH 250

Query: 1377 NVTSKGCFIMLSRKLDAKVLL----------SNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
            N+ + G FI L    ++ V L          S +S  +++     + +G+ V  ++L V+
Sbjct: 251  NIEAFGIFISLP---ESHVFLVCAPGCLCHVSEVSYNFIQDLSTLYKVGQWVQVKILKVD 307

Query: 1427 PLSKRVEVTLKTS 1439
              +KRV + +K S
Sbjct: 308  AETKRVSLGMKAS 320



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 113/268 (42%), Gaps = 28/268 (10%)

Query: 225 LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGID-----VKPGL 278
           ++ ETV     +  YV+ ++D+   L    P   G L   + ++N S ++      K G 
Sbjct: 41  ITFETVTIEQSVIRYVQEVKDNWAWLVLS-PHLKGCLFILDTSDNPSELERFKERFKVGD 99

Query: 279 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK-DLKGISIDLL---VPGMMVSTR------ 328
             Q  +RS++  RK V LS  P T  +   K DL G  I  +   V G  V  R      
Sbjct: 100 PFQCHIRSVNHERKQVDLSLHPKTRDEQFKKGDLLGRRITRVFAGVGGHTVQGRWESLGK 159

Query: 329 ----VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTS 384
               V+++ E G  +         + + +L N+F   N    +   K ++ RIL ++P S
Sbjct: 160 VHGFVKNVTEKGCFVILSPSLEARIQLKNLSNSF-VQNPAEMFPPGKVISGRILSIEPLS 218

Query: 385 RAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP---VSTPAYVT 441
             + ++L      + +       G+I   S  +      G+ + +P +    V  P  + 
Sbjct: 219 GHIEMSLTATTSQDSSGWKKFGAGEIV--SGRIHNIEAFGIFISLPESHVFLVCAPGCLC 276

Query: 442 -ISDVAEEEVRKLEKKYKEGSCVRVRIL 468
            +S+V+   ++ L   YK G  V+V+IL
Sbjct: 277 HVSEVSYNFIQDLSTLYKVGQWVQVKIL 304


>gi|118374077|ref|XP_001020230.1| S1 RNA binding domain containing protein [Tetrahymena thermophila]
 gi|89301997|gb|EAR99985.1| S1 RNA binding domain containing protein [Tetrahymena thermophila
            SB210]
          Length = 2060

 Score =  154 bits (390), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 329/1529 (21%), Positives = 615/1529 (40%), Gaps = 243/1529 (15%)

Query: 125  KITLKNISAGMKLWGVVAEV--NEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL 182
            K+ +   S G ++   V+E   N + +V+ L    +     ADA +        + E+N 
Sbjct: 144  KVPVLRYSPGTQVLTAVSEYGSNGQYMVVNLSRNKKAFVTVADATEA-------SKEEND 196

Query: 183  LPTIFHVGQ-LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVK 241
            L  I+  G+ L+  IV         I +  + +S++ S +  GL +  +   M+L   V 
Sbjct: 197  L-RIYDQGEYLIGEIV-------PSIKEGNMNVSIKTSKVNSGLQISDIHLNMILPGLVS 248

Query: 242  SIEDHGYILHF-GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD- 299
            S EDHG  + F G   + GFL ++    N+  D++ G +    V   +  +++V+LS   
Sbjct: 249  SKEDHGAKIEFNGGEKYFGFLSKD--EANNFEDLEEGRVYMFRVIKKEEKKRLVHLSQKV 306

Query: 300  PDTVSKCVTK---DLK-GISIDLLV-PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHL 354
             D   K V     D++ G  +  L  PG +V+  +  +L NG+++ FL  F G +   HL
Sbjct: 307  SDQEGKFVVSGEVDIEDGADLHHLAKPGNLVNAVILKVLNNGLIVRFLKQFIGFIFEDHL 366

Query: 355  QNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLT-------LNPYLLHNRAPPSHVKV 407
                        Y + +K+ ARI+  D   + + L+       L PY        + +  
Sbjct: 367  DKEISA------YKEKEKLLARIIASDFDQKQINLSVKKAHIDLKPY------EDNSIVT 414

Query: 408  GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR--V 465
            GD+     VV      G     P+      +++  + + +EE+       KEG      +
Sbjct: 415  GDVLTDGFVVTKALYGGSYFVKPNNSNIQQSFLHKAHIEKEEL-------KEGQTYTDAI 467

Query: 466  RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            +I    + E +     K    +  V   +D++PGM +  K+  +   GA  Q+   V   
Sbjct: 468  KIKEINYFEQIPIITAKGELVK-RVTNWNDLRPGMQLSAKIDKIIQ-GANNQYKLKVAVN 525

Query: 526  CPLPHMSEF----EIVKPG---KKFKVGAELVFRVLGVK--SKRITVTHKKTLVK---SK 573
              +  + +F    +I K G   K  K G ++  R++ V    K +  T K  L+     K
Sbjct: 526  DKMIGLVDFYNTADIPKAGPVPKNLKEGRKIKVRIMSVNPSDKTLRFTIKPALLNEEDDK 585

Query: 574  LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVG 633
            +    S A+  D  +  G+I++  ++G  V+F+  V G     ++    G      Y VG
Sbjct: 586  ILKNISNAQVGDSYL--GFISRKTEYGYIVQFFGDVIGLLTFKDIEEING-HSRDEYKVG 642

Query: 634  QVVKCRIMSSIPASRRINLSF------MMKPTRVSED--------------DLVKLGSLV 673
            QV++  I        +I LS        ++  ++S++              ++  +   V
Sbjct: 643  QVIRVYIAFVNAEQGKIGLSISEKGVSQLQKQKLSQNTSRKTLFEFQAINENVENISHNV 702

Query: 674  SGVVDVVTPNAVVVYVIAKGYSK---GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVL 730
              V++ +  N   +  +   Y K     I  EHL+D   H   +    +        + +
Sbjct: 703  GDVLEYIVENNQALQDVLTLYHKEHRAIIAIEHLSDFRNHYQSLNQYYRTLPNKGNQVTI 762

Query: 731  DNE------SSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
              +      + N+++SAK S++++    P+    +  N++   Y+      G  V+F  R
Sbjct: 763  KCKIIHIMPNKNVIVSAKPSILSNMN--PNSLESVKANNIYTAYIDRGARKGVLVKFNER 820

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL-------KQSCCSS 837
            +  F      +  +  D    +    SV   +   N E  +IT SL       KQ+  +S
Sbjct: 821  VKFF------IGKENLDEHAAFQTYDSVL--VFVKNVEGDKITASLQNEAVFKKQAHINS 872

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                F+ E+F  E    ML      G   K    + +G+ +   +    +FG+VV   + 
Sbjct: 873  QFNRFI-EYFNDE---YMLNKKFTQGEHKKTWNKYRVGNYVNTTIELVKEFGIVVKVND- 927

Query: 898  SDVYGFITHHQLAG--ATVESGSVIQAAILDVAKAERLVDL---------SLKTVF---- 942
            S + G I +  +A   +T+  G  +   I D+   +++VD+          L T+     
Sbjct: 928  SPLTGLIMNEHVANTRSTLAEGQTLLCRITDIDFEKQMVDVIPSPIDDNTKLTTLLQSNN 987

Query: 943  --IDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
              +D+F E  +N                   +T++A V   K  Y++  + +      Y 
Sbjct: 988  FNLDKFLELENN-------------------ETIDATVICQKGEYIICQITKAPKVFCYV 1028

Query: 1001 SVSDYNT---------QKFPQKQFLNGQSVIATVMALPSSSTAGR---LLLLLKAISETE 1048
            +++++N          QK    + +N + +  T     S++ A R   + L  + +++  
Sbjct: 1029 NMTNFNNLEHEEMLFGQKIKNLKCVNKEILQKTHKNAQSTNMALRSNYIPLFEQQVNQQN 1088

Query: 1049 TSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLF 1108
              ++   K   +   G  V  ++ +     + ++     +G++H ++  D +       F
Sbjct: 1089 KGTAIEEKSGITLKPGIKVVGKVLKTVGFNVFVQLKGKLYGKLHKSQCQDAEQ------F 1142

Query: 1109 SNFKIGQTVTARIIAKSNKPDMKKSFLWELSIK-----PSMLTVSEIGSKLLFEECDVSI 1163
            ++FK GQ +  +I+    K D  KS   +L+ K      ++L  SE+ S  +    +  +
Sbjct: 1143 ASFKEGQQIDCKILYL--KKD--KSLQIDLTTKQAHMNSTLLEESEVLSMSIDNFRENCV 1198

Query: 1164 GQRVTGYVYKVDNE-----WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
            GQ   G V   D       +  L+   H     F LD+     +L + ++++  G  V  
Sbjct: 1199 GQIHRGVVKSTDPSSIHPVYIELSNYHHGYFSAFDLDA----EDLNQIKKKYKKGSIVEC 1254

Query: 1219 HVLSI--NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
             ++S+  +KE  L  + L P        + D S +   + I  GD+V  +I K      G
Sbjct: 1255 RIVSLSSSKENDLKHIQLSP-----KLLSADESAEKKDS-IKVGDLVTAKIVK--KNNNG 1306

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
              VQI  +L+G V  TE+ +  +++  S      FVK +V+          H  LSLRSS
Sbjct: 1307 FRVQISDNLFGNVDITEICDEWIANASSSIQINSFVKARVI-----AEEGDHKYLSLRSS 1361

Query: 1337 LDGM-----------SSTNSSDLSTDVDTPGKHLEKIEDLSP-----NMIVQGYVKNVTS 1380
            +              ++ N     +D +  G    +I  L P      M+  GY+     
Sbjct: 1362 VTNEQNWKNSLGPNGTTINYKKYFSDSEKIGDLRNRIIKLGPGSIKVGMVFVGYINQTND 1421

Query: 1381 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
            KGCFI + +    +  L+ LSD ++  P+  F   KLV GR++ ++   K +E +L+ S 
Sbjct: 1422 KGCFIKIGQDTVVRASLNELSDEHIAKPQTHFYQNKLVVGRIIQIKEDGK-IEASLRESV 1480

Query: 1441 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD--- 1497
             +     +    S L VG  V G +      G +    + ++ G    + L +D  D   
Sbjct: 1481 IKYGYSMDD---SKLQVGATVYGTV-----VGHYQGRASVSIRGCKFRASLDKDDTDFTD 1532

Query: 1498 -----NIETIYRAGEKVKVKILKVDKEKR 1521
                  +E +   G  VK K++K +KE +
Sbjct: 1533 EEKMGYVEKLLPIGSAVKAKVIKYEKEPK 1561



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1474
            G+ +  R++SV P  K +  T+K +         + N+SN  VGD  +G I R   YG  
Sbjct: 553  GRKIKVRIMSVNPSDKTLRFTIKPALLNEEDDKILKNISNAQVGDSYLGFISRKTEYGYI 612

Query: 1475 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
            +     +++GL    ++ E +  + +  Y+ G+ ++V I  V+ E+ +I L +
Sbjct: 613  VQFFG-DVIGLLTFKDIEEINGHSRDE-YKVGQVIRVYIAFVNAEQGKIGLSI 663


>gi|302824300|ref|XP_002993794.1| hypothetical protein SELMODRAFT_431822 [Selaginella moellendorffii]
 gi|300138357|gb|EFJ05128.1| hypothetical protein SELMODRAFT_431822 [Selaginella moellendorffii]
          Length = 433

 Score =  154 bits (388), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 142/221 (64%), Gaps = 19/221 (8%)

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK++ GR+LS+EPLS  +
Sbjct: 218  GFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVILGRILSIEPLSGHI 277

Query: 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV------GLC 1486
            E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++        LC
Sbjct: 278  EMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGCLC 332

Query: 1487 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
            HVS +S D + ++ T+Y+ G+ V+VKILKVD E +RISLGMK+SY     +++++  E  
Sbjct: 333  HVSGVSYDFIQDLSTLYKVGQCVQVKILKVDAETKRISLGMKASYLT--PEDIELMEE-- 388

Query: 1547 SDEAIEEVGSYNRSSLLENSSVAVQD-MDMESEDGGSLVLA 1586
              EAI E  S N + L++N     +D +D+ S+    L ++
Sbjct: 389  --EAINEEPS-NTNVLMDNDEREEEDYLDLASKRFPQLCMS 426



 Score =  104 bits (260), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 151/331 (45%), Gaps = 57/331 (17%)

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
            +LS++PS L  ++    ++  E  V+I Q V  YV +V + WA L +S HLK  LFILD+
Sbjct: 75   DLSLRPSELAGNDAACSVITFE-TVTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDT 133

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG---------------- 1240
            + +PSEL+ F+ RF +G     H+ S+N E+K + L L+   DG                
Sbjct: 134  SDDPSELERFKERFKVGDPFQCHIRSVNHERKQVDLSLQKQADGSHEFLLVLADILCKAD 193

Query: 1241 --ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
              +S+   D   D+  +   EG    G +  +     G  V + P L  R+    L N  
Sbjct: 194  GKVSENFNDTWIDDPASLFTEGQF--GFVKNVTE--KGCFVVLAPSLEARIQLKNLSNSF 249

Query: 1299 VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1358
            V +P   +  G+ +  ++L I   + G  H+E+SL       ++T S D S         
Sbjct: 250  VQNPAEMFPPGKVILGRILSI-EPLSG--HIEMSL-------TATTSQDSS--------- 290

Query: 1359 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL----------SNLSDGYVESP 1408
                +      IV G + N+ + G FI L+   ++ V L          S +S  +++  
Sbjct: 291  --GWKKFGAGEIVSGRIHNIEAFGIFISLA---ESDVFLVCAPGCLCHVSGVSYDFIQDL 345

Query: 1409 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
               + +G+ V  ++L V+  +KR+ + +K S
Sbjct: 346  STLYKVGQCVQVKILKVDAETKRISLGMKAS 376



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%)

Query: 801 DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 851
           DLS  Y VGQ V+  IL V++ET RI+L +K S  +  D   M+E  + EE
Sbjct: 344 DLSTLYKVGQCVQVKILKVDAETKRISLGMKASYLTPEDIELMEEEAINEE 394


>gi|257206022|emb|CAX82662.1| putative DnaJ (Hsp40) homolog, subfamily C, member 2 [Schistosoma
           japonicum]
          Length = 1870

 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 187/793 (23%), Positives = 339/793 (42%), Gaps = 124/793 (15%)

Query: 139 GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE-----DNL--LPTIFHVGQ 191
           GVV  +++  L I LP G  G     D  D   +   E+ E     D+L  L  +F VGQ
Sbjct: 9   GVVKSIHKLYLEIQLPHGFLGRVNIYDISDKYTELLRESAETGVIHDDLVELSEMFKVGQ 68

Query: 192 LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
           +V C + + D+ +     ++  +SL   ++ K +  + ++  MV    + S EDHGYI+ 
Sbjct: 69  IVRCFIKESDNSRGGGSNKRYLVSLNPKMVNKSVISKNLKPYMVFVGSIVSNEDHGYIVD 128

Query: 252 FGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVT--- 308
            G+P  + FLP++ + +N  I    G L+       D +    ++SS  D VSK  T   
Sbjct: 129 SGVPRMSCFLPKDQVDDNPNI----GSLIAFTPYVSDPSN---FVSSTSDRVSKVTTRLD 181

Query: 309 ------KDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 362
                 K    ++ D ++PG  ++  +   + + ++  F  YF           + P ++
Sbjct: 182 PTLSVLKSNSRVNFDCILPGTCLNASIVKKVTSVLVAEFSDYFI----------SVPRSH 231

Query: 363 W---KNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVK---------VGDI 410
           +   K DY     V   I+FVDP+++ +  +L P+L++    PS +K         VG  
Sbjct: 232 YDGCKEDYQIGANVVVCIIFVDPSAKQLTGSLLPHLVN--PIPSILKISELLFRCPVGTR 289

Query: 411 YDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEGSCVRVRIL 468
           +  S V RV++   +L+ +P T  S      +  + + E +  E  K    GS +  RI+
Sbjct: 290 FSGSLVERVNKR-AVLVKLPKTNGSK----AVIRIHKTETKNNENFKSLAVGSKLTCRII 344

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
           G   LE +A   +          + +++KPG  V   V      G +V   G +  L P 
Sbjct: 345 GHDFLENVAVATINKKLLTVPFLSLNELKPGYKVLATVKRYSKTGIVVHIEGRLHGLIPY 404

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSS---YAE- 582
            H ++  + +  +KFK G ++   VL +   + ++ +T K  LV S+  +  S   Y   
Sbjct: 405 LHTTDINLKEYKEKFKAGEKVSCIVLQLDECANKLILTAKPGLVNSEFPVFGSREMYTAL 464

Query: 583 ---ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 639
               TDRL+  G++ K+ + G  +   + V+G+ P+ E GL       + ++ GQV+K +
Sbjct: 465 EKGNTDRLLVIGFVVKVSEKGLLISGLDNVRGWIPKRETGLADEDILQTNFYRGQVLKMK 524

Query: 640 IM---------------SSIPASRRINLSFMMKPTRVSED---DLVKLGSLVSGVVDVVT 681
                             SI +    +L F  K  + S+    D V +G   S  V+ V 
Sbjct: 525 FKREINISPTNQMEGDNQSIRSKYMFSLKFHSKKVKSSQSIFLDSVHIGQRFSATVNRVE 584

Query: 682 PNAVVVYVIAKGYSKGTIPT---------EHLADHLEHATVM---KSVIKPGYEFD---- 725
              + V + A   S  T+ +           L+D+  +  ++      +K G   D    
Sbjct: 585 DTGISVNLYATKDSNNTMTSVLGTGFLSFSQLSDYESNQQLLCRYTKNMKSGSTLDWNNS 644

Query: 726 --QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIET-- 775
             +++V+D     +++SA+ +LI +A     DAS+      +  ++ + G++    E   
Sbjct: 645 AREVVVIDKGKQTVIVSARPTLIWAAGNPKIDASNDVNMVDLQTSTTMPGFLRTFDELQI 704

Query: 776 --------------GCFVRFLGRLTGFAPRSKAVDGQ---RADLSKTYYVGQSVRSNILD 818
                         G FVRF   + G AP+    D +     + ++ + VG +V + I++
Sbjct: 705 GGQWFAWVSHHKDYGVFVRFPAGIYGLAPKHLLSDFRAPSNTNWAELFPVGATVIAKIVE 764

Query: 819 VNSETGRITLSLK 831
           V  E      SL+
Sbjct: 765 VTPEKRHCLASLR 777



 Score = 47.4 bits (111), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 109/281 (38%), Gaps = 69/281 (24%)

Query: 1636 KEKEEREQEIRAA-------EERLLEKDA--PRTPDEFERLVRSSPNSSFVWIKYMAFML 1686
            KE   R+ E+R A       E++ L K    P+T +EFE  VR+ P++   WI YM  +L
Sbjct: 1553 KEWRLRDMEMRKAILAALTSEQQYLPKGQLHPQTTEEFELAVRNMPSNEACWIAYMTHLL 1612

Query: 1687 S------------MADVEKARSIAERALQTINIREENEKL----NIWVAYFNLENEYGNP 1730
            S               V +AR+IAER L+ I+    N  L    ++ ++Y  +E +    
Sbjct: 1613 SGKIGQQTNNSGLNKGVIEARAIAERGLRAISNSASNNLLVKQSSLLISYLIMEAK---- 1668

Query: 1731 PEEAVVKVFQRALQY-----------------CDPKKVHLALLGL-------YERTEQNK 1766
             E   +   Q+  QY                    K+V   L  L       + R   + 
Sbjct: 1669 -ELERLTCLQKQQQYHLSSSSISVSDLVMEINNQSKRVSQLLTQLLNLDQAPFIRRAIDT 1727

Query: 1767 LAD--------ELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHI 1818
            L+D        EL  + IK        WL  ++   +          QR   SL +    
Sbjct: 1728 LSDIGHHTRAEELARRQIKSHPVDVDHWLSLIKARFRAGNVEAAREAQRNAASLLKS--- 1784

Query: 1819 KFISQTAI----LEFKNGVADRGRSMFEGILSEYPKRTDLW 1855
              + Q AI    +EF  G  DRG  + +  L+ +PKR  L+
Sbjct: 1785 SILPQLAIGVARIEFDYGDIDRGIRLLQEQLTIHPKRKLLY 1825


>gi|389612595|dbj|BAM19726.1| pre-rRNA processing protein rrp5, partial [Papilio xuthus]
          Length = 233

 Score =  152 bits (383), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/240 (33%), Positives = 145/240 (60%), Gaps = 13/240 (5%)

Query: 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741
            MAF L   ++EKAR +  RAL+TI+ REE EKLN+W+A  NLE+ +G   +E+  K  + 
Sbjct: 1    MAFHLQATEIEKARGVGRRALRTISFREEQEKLNVWLALLNLEHRFGT--KESQQKTLEE 58

Query: 1742 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR------RVQRLLK 1795
            ALQ  +  ++H  LL +Y  T +   A  L   M++K++   + ++       ++  L K
Sbjct: 59   ALQMNEKYQIHSKLLDIYVETGKASEAGALAELMLRKYRRQLQAYIDAGNACYQLGLLDK 118

Query: 1796 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1855
             +Q     ++Q+ L +L + +H+  + + A LE   G A+R  ++ E +++ YP+R D+ 
Sbjct: 119  ARQ-----IMQKGLTALEKREHVSLLVRFAQLERGCGEAERAGALLEHVVAAYPQRVDVT 173

Query: 1856 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915
            S+Y+D  ++  D++ +R L ER  S  LP +KMK LFKK++E E+ +G +++++ +K++A
Sbjct: 174  SLYVDMLLKSNDIERVRQLMERMTSQKLPARKMKVLFKKWIEVEEKIGNQQQVDNIKKRA 233


>gi|387192690|gb|AFJ68666.1| rrna biogenesis protein rrp5, partial [Nannochloropsis gaditana
           CCMP526]
          Length = 578

 Score =  149 bits (377), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 176/365 (48%), Gaps = 34/365 (9%)

Query: 93  KKKTERKANETVDDLGSLFGDGISGKLPRYANKIT---LKNISAGMKLWGVVAEVNEKDL 149
           K+ TE   NE    L    G G   K+ R   +I+   LK +  G  + GVV  V  KD+
Sbjct: 104 KEATEGFHNEA-SKLTQAVGLGCVTKIGRAVPQISPICLKQMVRGTAVLGVVIRVGPKDV 162

Query: 150 VICLPGGLRGLARAADALDPI-----------LDNEIEANED--NLLPTIFHVGQLVSCI 196
            + LPGGL G     +  DP            + + +   ED    + T    GQ+V  +
Sbjct: 163 SVALPGGLSGRVPLVEVSDPFFSRFSPSVNGTISDPVSEKEDLIKAVSTFLRPGQVVRAV 222

Query: 197 VLQLDDDKKE----------IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 246
           V   +   ++             +K+ L+LR S + +GL LE V  G  L   V S+EDH
Sbjct: 223 VSSSNAASRKQSAGGAGSGGRASQKVPLTLRASAVNRGLKLEHVLPGGALMGAVASVEDH 282

Query: 247 GYILHFGLPSFTGFLPRNNLAENSGIDVKPGLL----LQGVVRSIDRTRKVVYLSSDPDT 302
           GY++  GL   T FL R ++    G +V+  L+    ++ VV  +    + +    DP  
Sbjct: 283 GYVVSTGLEGVTAFLARKHV--KGGAEVEKALVKGSPVEIVVLDVKEASRAITCGFDPAV 340

Query: 303 VSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTN 362
           + + +T+    +++  L PGM+V+  + +IL+NG+ L+FL   +G V + HL   +   +
Sbjct: 341 LPRALTRG-SALTLAGLKPGMLVNAAIDAILKNGLALTFLGGLSGVVSLEHLDRPYAEND 399

Query: 363 WKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRG 422
           W+  Y     +  R+L VD  S++V LTL  +LL  RAP    ++G +  ++KV+RVD  
Sbjct: 400 WRKRYRLGDILQVRVLMVDVKSKSVYLTLRAHLLGMRAPSGLPELGQVLSEAKVLRVDPT 459

Query: 423 LGLLL 427
            GL+L
Sbjct: 460 KGLVL 464


>gi|302776682|ref|XP_002971492.1| hypothetical protein SELMODRAFT_412239 [Selaginella moellendorffii]
 gi|300160624|gb|EFJ27241.1| hypothetical protein SELMODRAFT_412239 [Selaginella moellendorffii]
          Length = 883

 Score =  149 bits (377), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 140/225 (62%), Gaps = 18/225 (8%)

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
            +VKNV  KGCF++L+  L+A++ L NL + +V++P + FP GK++ GR+LS+EPLS  +E
Sbjct: 174  FVKNVMEKGCFVVLAPSLEARIQLKNLLNSFVQNPAEMFPPGKVILGRILSIEPLSGHIE 233

Query: 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV------GLCH 1487
            ++L  + S+ +S            G+IV G+I  +E++G+FI++  +++        LCH
Sbjct: 234  MSLAATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGCLCH 288

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1547
            VSE+S D + ++ T+Y+ G+  +VKILKVD E +RISLGMK+SY   + D +    E   
Sbjct: 289  VSEVSYDFIQDLSTLYKVGQWAQVKILKVDVETKRISLGMKASYLTPE-DGI----EPME 343

Query: 1548 DEAIEEVGSYNRSSLLENSSVAVQD-MDMESEDGGSLVLAQIESR 1591
            +EAI E  S N + L++N     +D +D+ S+    L +  + ++
Sbjct: 344  EEAINEEPS-NTNVLMDNDEREEEDYLDLASKRFPQLCINPLSTK 387


>gi|221508178|gb|EEE33765.1| programmed cell death protein, putative [Toxoplasma gondii VEG]
          Length = 395

 Score =  148 bits (374), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 114/181 (62%), Gaps = 6/181 (3%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            PR+P++FERLV  + NS+ VWI YMA+ L + +++ AR IAERA+Q IN REE E+ ++W
Sbjct: 219  PRSPEDFERLVLVNGNSAAVWISYMAYYLKLNELQLARQIAERAVQHINYREEQERSSVW 278

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
            +AY NLE  YG+     V  VF+RA+QY D KK+H  +  +YE+  Q   A ++  K  +
Sbjct: 279  IAYLNLECVYGD----RVDDVFRRAIQYNDSKKIHYQMTFIYEKARQLDKARQMCEKCCE 334

Query: 1778 KFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835
            KF  S K+W+R +  L          + ++ +AL  LPR KHI+F++  A LE+K+   +
Sbjct: 335  KFPESQKMWVRHLTLLYTALDAASAARDLMLQALFRLPRRKHIEFVATCARLEYKHASKE 394

Query: 1836 R 1836
            R
Sbjct: 395  R 395


>gi|360043001|emb|CCD78412.1| putative programmed cell death protein 11 (pre-rRNA processing
           protein rrp5) [Schistosoma mansoni]
          Length = 1880

 Score =  148 bits (374), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 180/781 (23%), Positives = 325/781 (41%), Gaps = 103/781 (13%)

Query: 139 GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANE-----DNL--LPTIFHVGQ 191
           GV+  V +  L + LP G  G     D  D   +   E+ E     D+L  L  +F VGQ
Sbjct: 9   GVIKSVQKLYLEVQLPHGFLGRVNIYDVSDKYTELLRESAESGIIQDDLVELSDMFKVGQ 68

Query: 192 LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
            V C + + D+ +     ++  +SL   ++ K +  + V+  MV    V S+EDHGYI+ 
Sbjct: 69  TVRCFIKEADNSRGSGSTKRYIVSLNPKMVNKAVISKNVKPHMVFVGSVVSVEDHGYIVD 128

Query: 252 FGLPSFTGFLPRN----NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 307
            G+     FLP++    NL   S I   P +    V  S   +++V+ +++  D+    +
Sbjct: 129 PGVARMNCFLPKDQVDVNLDIGSLIPFTPHVSDPLVNSS---SKRVLKVTTRLDSTLSVL 185

Query: 308 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 367
           + D + ++ D ++PG  +   +   + + ++  F  YF       ++ N       K DY
Sbjct: 186 SPDSR-VNFDCMLPGTCLHASIVKKVTSTLVAEFSEYFVSISRTHYIGN-------KEDY 237

Query: 368 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP--------SHVKVGDIYDQSKVVRV 419
               KV   I+ VDP+++ +  +L P+L+ N  P         S   VG  +  S V RV
Sbjct: 238 QIGAKVFVCIILVDPSTKQLTGSLLPHLV-NPIPSVLNISEMLSKCPVGTRFSGSLVERV 296

Query: 420 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 479
           ++   +L+ +P T     A + I     +      K    GS +  RI     LE +A  
Sbjct: 297 NKR-AVLVKLPKTN-GLKAVIRIPKTGTKNNENF-KSLVVGSKLTCRITDHDFLENVAVA 353

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
                       +  ++KPG  V   V      G +V   G +  L P  H ++  +   
Sbjct: 354 TTNKKLLSLPFLSLHELKPGNKVSATVKRYSKTGIVVHLEGRIHGLIPYLHTTDINLKDH 413

Query: 540 GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT-------DRLITH 590
            +KFK G ++   VL +   + ++ +T K  L+ ++L I  S+   +       ++L+  
Sbjct: 414 REKFKAGEKVSCLVLQLDECANKLILTAKPGLLNAELPIFGSHEMYSALKNGNNNQLLIV 473

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR- 649
           G+I K+ + G  +   + ++G+ PR E GL       + ++ GQV+K +    I  S   
Sbjct: 474 GFIVKVSEKGLLISGLDNIRGWIPRRETGLADEDILQTNFYRGQVLKMKFKREINISSEN 533

Query: 650 --------------INLSFMMKPTRVSED---DLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
                         ++L F  K T+  +    + V++G L    V+ V    + + +  K
Sbjct: 534 EVEKDSRNIRSKYMLSLKFHSKKTKNMQSIFLNSVQIGQLFRATVNQVQDTGISLNLYDK 593

Query: 693 GYSKGTIPT--------EHLADHLEHATVMKSV---IKPGYEFD------QLLVLDNESS 735
             +    P           L+D+  +  ++      IKPG   D       ++V+D    
Sbjct: 594 NINDTVTPVLGTGFLSFSQLSDYESNQQLLSRYIKNIKPGSTLDWNHSARNVVVIDKGKQ 653

Query: 736 NLLLSAKYSLINSAQQLP-----------SDASHIHP-----------NSVVHGYVCNII 773
            ++LSA+ +L+ +A  L            S+AS   P            S    +V +  
Sbjct: 654 TVILSARPTLVQAASDLKTNINIDVDMVDSEASDKRPGFLRTFDELQVGSQWFAWVSHHK 713

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQ---RADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
           + G FV F   + G AP+    D +     + ++ + VG +V + I++V  E     +SL
Sbjct: 714 DYGVFVHFPAGIYGLAPKHLLSDFRTQSNTNWTELFPVGATVITKIVEVTPEKCHCLISL 773

Query: 831 K 831
           K
Sbjct: 774 K 774



 Score = 48.1 bits (113), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 24/121 (19%)

Query: 1613 SQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAA-------EERLLEKDA--PRTPDE 1663
            S N  H D  +   E  +     KE   RE E+R A       E++ L K    P+T +E
Sbjct: 1545 SNNDEHLDIER---EDKSESQAAKEWRLREMEMRKAMLAELTTEQQCLPKGQLHPQTTEE 1601

Query: 1664 FERLVRSSPNSSFVWIKYMAFMLS------------MADVEKARSIAERALQTINIREEN 1711
            FE  VR+ P++ F WI YM  +LS               V  AR+I ER L+ I+    N
Sbjct: 1602 FELAVRNMPSNEFCWIAYMTHILSNKVDHQSVSSSLNKGVIDARAIVERGLRAISNSTSN 1661

Query: 1712 E 1712
            +
Sbjct: 1662 Q 1662


>gi|123507674|ref|XP_001329471.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3]
 gi|121912426|gb|EAY17248.1| S1 RNA binding domain containing protein [Trichomonas vaginalis G3]
          Length = 1601

 Score =  147 bits (372), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 312/1413 (22%), Positives = 526/1413 (37%), Gaps = 279/1413 (19%)

Query: 153  LPGGLRGLARAADALDPILDNEIEA--NEDNL--LPTIFHVGQLVSCIVLQLDDDKKEIG 208
            LPG  RG  +  +  DP L     A  N++ L  L   F++G  +   V+         G
Sbjct: 75   LPGNARGTLQLTEINDPFLQRLQHAIKNDEELPELENFFNIGDFLMATVISA-------G 127

Query: 209  KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE 268
               + LS+R +L+    S+   +EG +    VKS ED GYI+  G  + T FLP      
Sbjct: 128  THPVELSIRPNLVN---SMIEPEEGRIFWGAVKSKEDRGYIIDLGKENVTAFLPF----- 179

Query: 269  NSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKC-VTKDLKGISI-------DLLV 320
                   P  L  G      +   V  L    +++ KC +TK     S+       D L 
Sbjct: 180  -------PAQLEVG------QPAFVTLLKKTSESIYKCELTKKDFFPSVPTVKPFFDTLR 226

Query: 321  PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV 380
            P  ++   V S   NG +      F G    +         +W         V  R + +
Sbjct: 227  PIDVLDGLVTSNFTNGALAINAQSFNGFCSKY---------SWPPGLTNGNNVQVRPVLI 277

Query: 381  DPTSRAVGLTLNPYLLHNRAPPS-HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAY 439
            D   + +  T  P +++   P     K+G     SKV R+   +G+   +P         
Sbjct: 278  DHAQKTIWFTAIPRIVNGERPYCLDAKIGSKV-TSKVSRIRYNVGIEFTMPDN------- 329

Query: 440  VTISDVAEEEVRKL--EKKYKEGSCVR-----VRILGFRHLEGLATGILKASAFEGLVFT 492
                    E +R    EK+ K  + +      VRI   R ++ L          +  VF+
Sbjct: 330  --------ENLRVFIPEKETKSHALMAGQDHVVRITERRPIDDLLLAADDPEIIDLAVFS 381

Query: 493  HSDVKPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
              DV PG ++   + A+ D  G  V+    + ALCP+ +       K G   K       
Sbjct: 382  ADDVHPGQILDATISAINDKIGIFVELSPFLTALCPVSYCDNDPEPKKGDVKKC------ 435

Query: 552  RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATD----RLITHGWITKIEKHGCFVRFYN 607
             VL V    + V  K+  V S+L  + S   A +    +  TH  + K  K    V F N
Sbjct: 436  VVLSVSEGHVRVAMKEKFVTSELPRVESLEIAHNLCESKEWTHALVRKSGKSAIIVEFIN 495

Query: 608  GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
            G+ G    S L +  G + S  Y  G V+K  I SS+    +IN           E  ++
Sbjct: 496  GLVGMIRSSSLPVSQGQDISKQYPQGYVIKTMI-SSVDGD-KINCV-----VSTDESQIL 548

Query: 668  KLGSLVSGVVDVVTPNAVVVYVIAK-GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
             LG   +  VD  T +AV V V AK G     I   H +D+   + ++   +  G +   
Sbjct: 549  TLGQTCTVTVDRFTEDAVYVRVPAKYGEINSVIQATHFSDYEPLSRLIFKNLNIGDKLRH 608

Query: 727  LLVLDNESSN--LLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
              ++ N  +N     + K  +  + + +P D   I       G+V  I   G FV F GR
Sbjct: 609  ACLIRNPGTNAPAYFTMKRCIRENTESIPKDTKSIKAGEHYFGFVSGIQNYGSFVSFFGR 668

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST------ 838
             +G               S+   +G SV +  +D  +E G I L+   +   S       
Sbjct: 669  ASGLIH------------SRQLTLGDSVNA-FVDQVTEDGHIRLTTPIADGESIKFLDSF 715

Query: 839  --DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
              DA  + + +L++++I                        ++G   +S+++    S++ 
Sbjct: 716  LKDAKKLNDKYLIDQEIQ-----------------------VQGDGEKSDEY---FSYQL 749

Query: 897  HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQ 956
              D   +I    L    V++G+ ++ A  DV           K+VF              
Sbjct: 750  DED---WIC---LTNEKVKAGTTLKIAYADVLS---------KSVF-----------AVL 783

Query: 957  KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFL 1016
              K+ R    ++ V  TV  + E +        +   N  I    + +YN +   +K+  
Sbjct: 784  PPKKPRSIENNVVVKATVIGVFEPI-------FICTVNGRIVICPMVNYNNKT--EKKIA 834

Query: 1017 NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
             G+ +  TV+   S S +     +LK   +    S          ++   V A IT +  
Sbjct: 835  VGEELEITVVD--SRSESDETFEVLKGYPQYLLKS----------EISQNVVATITSVND 882

Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLW 1136
            +    K   G   RIH +++    S V E       +GQ V   ++   N      +FL 
Sbjct: 883  ISCNAKLNDGRTVRIHRSQL----SQVPE-------VGQQVKGSLMNGDN-----ATFLI 926

Query: 1137 ELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
                 P  +              D  +GQ+VTG + KV N+   L++S            
Sbjct: 927  TNPDSPQKIE-------------DFKVGQQVTGVITKVSNDSLRLSMS------------ 961

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
                         F +G   +  + S N+     ++V +P  +  S              
Sbjct: 962  ------------PFVLGTVSSLQLSSTNR-----KVVDKPLAESYS-------------- 990

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS-GYDEGQFVKCK 1315
               GD+  G +S + S     V  I P     V F ++  I   D  +     G   K  
Sbjct: 991  --VGDLFEGWVSSV-SEKMITVTGIDPSFSSNVEFAKVLKIKTGDYATVKVGNGSLKKLD 1047

Query: 1316 VLEISRTVRGTFHVELSLRSSLD--GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            V ++    +      L     +D   +S  N S   +D+    K + KIE+     I+QG
Sbjct: 1048 VTDVIDEYQFNPLSRLKKGKVIDVVNVSEENVSMKLSDITGTPKEI-KIEE---GEILQG 1103

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
            YV +       + L+R +  ++   +++D +++     +P+G +V  +++      K+ +
Sbjct: 1104 YVCHAIKGALLVRLARNVTGRLPFGSIADCFIQDAAALYPLGTVVTVKIM------KKTD 1157

Query: 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELS 1492
              +  S  R+        + +L VGD+V G I      G+F+ + +  N  GL H S L+
Sbjct: 1158 SEITLSSKRSDITGVALTIQDLKVGDVVGGFITAANKNGVFVRLNDYQNKSGLVHHSMLN 1217

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1525
                D +  +     +V V++L+VD EK RISL
Sbjct: 1218 GK--DPLSFVNLVNTRVDVEVLQVDLEKERISL 1248



 Score =  120 bits (302), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 131/538 (24%), Positives = 241/538 (44%), Gaps = 57/538 (10%)

Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1472
            P+ +L  G+V+ V  +S+   V++K SD  T +  EI     +  G+I+ G +       
Sbjct: 1059 PLSRLKKGKVIDVVNVSEE-NVSMKLSDI-TGTPKEIK----IEEGEILQGYVCHAIKGA 1112

Query: 1473 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532
            L + +   N+ G      +++  + +   +Y  G  V VKI+K  K    I+L  K S  
Sbjct: 1113 LLVRLAR-NVTGRLPFGSIADCFIQDAAALYPLGTVVTVKIMK--KTDSEITLSSKRSDI 1169

Query: 1533 KNDADNLQMSSEEESD------EAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLA 1586
               A  L +   +  D       A  + G + R +  +N S  V    +  +D  S V  
Sbjct: 1170 TGVA--LTIQDLKVGDVVGGFITAANKNGVFVRLNDYQNKSGLVHHSMLNGKDPLSFV-N 1226

Query: 1587 QIESRASVPPLEVNLDDEQPDMD-NGI-----------------SQNQGHTDEAKTID-- 1626
             + +R  V  L+V+L+ E+  +  N I                   ++G   E   ID  
Sbjct: 1227 LVNTRVDVEVLQVDLEKERISLKFNEIHSQNQPQEQEQQQEMETESDEGAEPEEVEIDLD 1286

Query: 1627 --------EKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVW 1678
                           K+  +++ E++I+  E + ++  AP++  EF   + ++P+SS +W
Sbjct: 1287 EWLSDEEKVDEEEKEKEIRRKQTEEDIQRLEAKQIDPSAPKSDKEFTAALVANPHSSKLW 1346

Query: 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE--EAVV 1736
            I YM F+ +  D ++A  I E+ L  + I E+ EK NI+ A   L      P    E  +
Sbjct: 1347 ISYMEFVYAGGDSKRAMEIGEQGLDKLPIGEKTEKSNIFQALITLIVLSAEPKHFMEECI 1406

Query: 1737 KVFQRALQYCDPKKVHLALLGLYERTEQNK--LADELLYKMIKKFKHSCKVWLRRVQRLL 1794
             + +RA Q  D +   +  L   +   QN+   + E     ++K K +  +W   +  LL
Sbjct: 1407 PIVERAAQTIDEE---VMWLRFAKTVHQNRKDFSQEAWKVALRKVKQNVTMWSSYLNSLL 1463

Query: 1795 KQQQ-EGVQAVVQRALLSLPR---HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850
            + ++ +  +  ++R L    +    + ++   Q  I E++N   + GR+MFE +++E+P 
Sbjct: 1464 QDKKVDFAKDELKRCLSGTFQGLAKESVEVRKQFGISEYENEYTEHGRTMFENLINEFPT 1523

Query: 1851 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908
            +  LW+ Y+D E + G+    R +FER  +L L   +MK   KK+  +E+  G +  I
Sbjct: 1524 KYQLWNAYVDAECKYGEHLKARNIFERMTTLDLKIDRMKQTLKKWRAFEEKNGNDPAI 1581


>gi|323453800|gb|EGB09671.1| hypothetical protein AURANDRAFT_5211, partial [Aureococcus
            anophagefferens]
          Length = 277

 Score =  146 bits (368), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/276 (31%), Positives = 148/276 (53%), Gaps = 12/276 (4%)

Query: 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW 1717
            PRT +++ERL+ +  N++  WI Y   +++ +D   AR + ERAL+ I  REE ++L  W
Sbjct: 1    PRTAEDYERLLVTEWNAAATWIAYAKLLVTESDATGARGVLERALKKIGYREEAQRLEAW 60

Query: 1718 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK 1777
             A    E ++G+   +++     RA +  DP +V L L  L+E T     AD    +  K
Sbjct: 61   AALLAHERDHGDA--KSLSAAVDRATKNADPTRVLLKLAALHEETSNYDAADAAYARAEK 118

Query: 1778 KFKHSC----KVWLRRVQ-RLLKQQQEGVQAVVQRALLSL----PRHKHIKFISQTAILE 1828
            + +        VWL   + RLL    +  +AV+ RA+ +     P+ +    +++ A LE
Sbjct: 119  RSRRQGATPDDVWLAHCRSRLLAGAADDARAVLDRAVQACADGGPKAE-ASLLAKFACLE 177

Query: 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888
               G ADRGR++F+  L+++PKR DLW +Y+ + ++ GDV   R +  R   ++LPPK M
Sbjct: 178  LDVGSADRGRTLFDTTLAKWPKRADLWQLYVAKSLKAGDVAHARAIQMRLAGVNLPPKAM 237

Query: 1889 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1924
            +   K++  +E++ G+    + VK  A  YV+   A
Sbjct: 238  RAALKRFAAFEEAHGDAASADAVKDLARAYVQKQQA 273


>gi|302779838|ref|XP_002971694.1| hypothetical protein SELMODRAFT_412227 [Selaginella moellendorffii]
 gi|300160826|gb|EFJ27443.1| hypothetical protein SELMODRAFT_412227 [Selaginella moellendorffii]
          Length = 429

 Score =  145 bits (365), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 132/485 (27%), Positives = 217/485 (44%), Gaps = 124/485 (25%)

Query: 1208 RRFHIGKAVTGHVLSINKEKK------LLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1261
            R++ +G+ V   +LS  K  +      +L L LRP +   +D    +     +T I E  
Sbjct: 54   RKYSVGQTVRAKILSKRKTSRKHRNAGILDLSLRPSELAGNDAACSVIT--FETVIIEQS 111

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP--LSGYDE----GQFVKCK 1315
            ++   + ++      LV  + PHL G +   +  +    DP  L  + E    G   +C 
Sbjct: 112  VIR-YVQEVKDNWAWLV--LSPHLKGCLFILDTSD----DPSELERFKERFKVGDPFQCH 164

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ--G 1373
            +  ++   +    V+LSL           S +     D  G+ + +       M ++  G
Sbjct: 165  IRSVNHERK---QVDLSLHPK-------TSDEQFKKGDLLGRRMTRFFAGRGKMGLELSG 214

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
            +VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS  +E
Sbjct: 215  FVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSGHIE 274

Query: 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            ++L  + S+ +S            G+IV                        CHVSE+S 
Sbjct: 275  MSLTATTSQDSS-----GWKKFGAGEIV---------------------SCFCHVSEVSY 308

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEE 1553
            D + ++ T+Y+ G+ V+VKILKVD E +RISLGMK+SY                      
Sbjct: 309  DFIQDLSTLYKVGQWVQVKILKVDAETKRISLGMKASY---------------------- 346

Query: 1554 VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGIS 1613
                                 +  EDG             + P+E    +E+P   N + 
Sbjct: 347  ---------------------LTPEDG-------------IEPMEEEAINEEPSNTN-VL 371

Query: 1614 QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVRSSP 1672
             N    +E   +D  + R  +   +        AA+E+LL+ D  P T D+FERLV +SP
Sbjct: 372  MNNDEREEEDYLDLASKRFPQLCMEA-------AAKEKLLQMDQPPETKDDFERLVAASP 424

Query: 1673 NSSFV 1677
            NSS++
Sbjct: 425  NSSYM 429



 Score =  112 bits (281), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 127/255 (49%), Gaps = 35/255 (13%)

Query: 1105 ENLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSI 1163
            EN    + +GQTV A+I++K       + + + +LS++PS L  ++    ++  E  V I
Sbjct: 50   ENPLRKYSVGQTVRAKILSKRKTSRKHRNAGILDLSLRPSELAGNDAACSVITFE-TVII 108

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
             Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+ S+
Sbjct: 109  EQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSV 168

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG-------- 1275
            N E+K + L L P       KT D      + F  +GD++G R+++  +G G        
Sbjct: 169  NHERKQVDLSLHP-------KTSD------EQF-KKGDLLGRRMTRFFAGRGKMGLELSG 214

Query: 1276 --------GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
                    G  V + P L  R+    L N  V +P   +  G+ +  ++L I      + 
Sbjct: 215  FVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPL---SG 271

Query: 1328 HVELSLRSSLDGMSS 1342
            H+E+SL ++    SS
Sbjct: 272  HIEMSLTATTSQDSS 286


>gi|313232837|emb|CBY09520.1| unnamed protein product [Oikopleura dioica]
          Length = 734

 Score =  140 bits (354), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 161/305 (52%), Gaps = 15/305 (4%)

Query: 1622 AKTIDEKNNRHAKKKEKE----------EREQEIRAAEERLLEKDAPRTPDEFERLVRSS 1671
            AK ++ ++ +  K KE E          E E + R AE  + +   P     +ER V ++
Sbjct: 416  AKEVERRSKKPQKTKEPEADSGKTLSLEEIEDKAREAEREMEKSKLPEDVSGWERAVITA 475

Query: 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731
            PN+S +W++Y AF ++  ++EK+R + +RAL+TI+ REE+++LNIW A  NLE  YG+  
Sbjct: 476  PNNSEIWLRYSAFHIASGEIEKSRMVMDRALKTIHFREEDDRLNIWKARLNLEALYGD-- 533

Query: 1732 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW--LRR 1789
            +E++   F  A +  D +KV+ A++G+   + +   A  +L   +KK+    ++W  L R
Sbjct: 534  KESLQSQFNEAKKCNDERKVYHAVIGIQLDSNKYSSAIPILRDAVKKYPEDIELWSKLGR 593

Query: 1790 VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849
             Q +     E     +QRAL +     H+    + A L+F+ G  + G+++ E +L  + 
Sbjct: 594  CQ-IEDGSPEKATVTLQRALQANKAKTHVMITQKFAKLQFEFGDLENGKTILEQMLKVHA 652

Query: 1850 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1909
            KR D+W +Y D  ++ GD +  R +  R I      +    L K+ +  E+ +G+E+  +
Sbjct: 653  KRADIWGVYGDLLLKFGDGEDARRVLLRGIEGCSKSRGRLHLMKRMINLEERIGDEQSAQ 712

Query: 1910 YVKQK 1914
              + K
Sbjct: 713  EWRTK 717


>gi|313220406|emb|CBY31260.1| unnamed protein product [Oikopleura dioica]
          Length = 699

 Score =  140 bits (353), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 161/305 (52%), Gaps = 15/305 (4%)

Query: 1622 AKTIDEKNNRHAKKKEKE----------EREQEIRAAEERLLEKDAPRTPDEFERLVRSS 1671
            AK ++ ++ +  K KE E          E E + R AE  + +   P     +ER V ++
Sbjct: 381  AKEVERRSKKPQKTKEPEADSGKTLSLEEIEDKAREAEREMEKSKLPEDVSGWERAVITA 440

Query: 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731
            PN+S +W++Y AF ++  ++EK+R + +RAL+TI+ REE+++LNIW A  NLE  YG+  
Sbjct: 441  PNNSEIWLRYSAFHIASGEIEKSRMVMDRALKTIHFREEDDRLNIWKARLNLEALYGD-- 498

Query: 1732 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW--LRR 1789
            +E++   F  A +  D +KV+ A++G+   + +   A  +L   +KK+    ++W  L R
Sbjct: 499  KESLQSQFNEAKKCNDERKVYHAVIGIQLDSNKYSSAIPILRDAVKKYPEDIELWSKLGR 558

Query: 1790 VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849
             Q +     E     +QRAL +     H+    + A L+F+ G  + G+++ E +L  + 
Sbjct: 559  CQ-IEDGSPEKATVTLQRALQANKAKTHVMITQKFAKLQFEFGDLENGKTILEQMLKVHA 617

Query: 1850 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1909
            KR D+W +Y D  ++ GD +  R +  R I      +    L K+ +  E+ +G+E+  +
Sbjct: 618  KRADIWGVYGDLLLKFGDGEDARRVLLRGIEGCSKSRGRLHLMKRMINLEERIGDEQSAQ 677

Query: 1910 YVKQK 1914
              + K
Sbjct: 678  EWRTK 682


>gi|302786996|ref|XP_002975268.1| hypothetical protein SELMODRAFT_415410 [Selaginella moellendorffii]
 gi|300156842|gb|EFJ23469.1| hypothetical protein SELMODRAFT_415410 [Selaginella moellendorffii]
          Length = 366

 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 154/336 (45%), Gaps = 123/336 (36%)

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 151  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 210

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
             +E++L  + S+ +S                                       LCHVSE
Sbjct: 211  HIEMSLAATTSQDSS--------------------------------------CLCHVSE 232

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +S D + ++ T+Y+ G+ V+VKILKVD E +RISL MK+SY                   
Sbjct: 233  VSYDFIQDLSTLYKVGQWVQVKILKVDAETKRISLRMKASY------------------- 273

Query: 1551 IEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDN 1610
                                    +  EDG             + P+E    +E+P   N
Sbjct: 274  ------------------------LTPEDG-------------IEPMEEEAINEEPSNTN 296

Query: 1611 GISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD-APRTPDEFERLVR 1669
             +  N    +E   +D  + R  +              EE+LL+KD  P T D+FERLV 
Sbjct: 297  MLMDND-EREEEDYLDLASKRFPQ-----------LCMEEKLLQKDQPPETKDDFERLVA 344

Query: 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1705
            +SPN                +++K R++AERAL+ I
Sbjct: 345  ASPN----------------NLDKVRAVAERALEKI 364



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 48/220 (21%)

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
            L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+ S+N E+K + L   P    
Sbjct: 57   LGMSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSVNHERKQVDLSRHP---- 112

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG------------------------G 1276
               KT D           +G ++G RI+++ +GVG                        G
Sbjct: 113  ---KTSDEQ-------FKKGGLLGRRITRVFAGVGRHTVQGRWESFGKVHGFVKNVTEKG 162

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
              V + P L  R+    L N  V +P   +  G+ +  ++L I   + G   + L+  +S
Sbjct: 163  CFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIE-PLSGHIEMSLAATTS 221

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
             D     + S++S D          I+DLS    V  +V+
Sbjct: 222  QDSSCLCHVSEVSYDF---------IQDLSTLYKVGQWVQ 252


>gi|302779850|ref|XP_002971700.1| hypothetical protein SELMODRAFT_412236 [Selaginella moellendorffii]
 gi|300160832|gb|EFJ27449.1| hypothetical protein SELMODRAFT_412236 [Selaginella moellendorffii]
          Length = 479

 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 116/182 (63%), Gaps = 18/182 (9%)

Query: 1351 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1410
            D+  PG+    +E       + G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P +
Sbjct: 197  DLKRPGRGKMGLE-------LSGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAE 249

Query: 1411 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1470
             FP GK+++GR+LS+EPLS  +E++L  + S+ +S            G+IV G+I  +E+
Sbjct: 250  MFPSGKVISGRILSIEPLSGHIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEA 304

Query: 1471 YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +G+FI++  +++     +       V N+ T+Y+ G+ V+VKILKVD E +RISLGMK S
Sbjct: 305  FGIFISLAKSDVASSLSIL------VSNLSTLYKVGQWVQVKILKVDAETKRISLGMKVS 358

Query: 1531 YF 1532
            Y 
Sbjct: 359  YL 360



 Score =  117 bits (292), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 166/353 (47%), Gaps = 55/353 (15%)

Query: 1106 NLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
            +L  N  I +TV A+I++K       + +   +LS++PS L  ++    ++  E  V+I 
Sbjct: 42   SLRGNVHITETVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVITFET-VTIE 100

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
            Q V  YV +V + W  L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+ S+N
Sbjct: 101  QSVIRYVQEVKDNWTWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHIRSVN 160

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG---------GRISKILSGV- 1274
             E+K + L L P     SDK       ++Q FI+ G +           G++   LSG  
Sbjct: 161  HERKQVDLSLHP---KTSDK--QFKKGDLQ-FIYRGTVRKVLDLKRPGRGKMGLELSGFV 214

Query: 1275 -----GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
                  G  V + P L  R+    L N  V +P   +  G+ +  ++L I      + H+
Sbjct: 215  KNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPSGKVISGRILSIEPL---SGHI 271

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
            E+SL       ++T S D S             +      IV G + N+ + G FI L++
Sbjct: 272  EMSL-------TATTSQDSSG-----------WKKFGAGEIVSGRIHNIEAFGIFISLAK 313

Query: 1390 KLDA---KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
               A    +L+SNLS  Y         +G+ V  ++L V+  +KR+ + +K S
Sbjct: 314  SDVASSLSILVSNLSTLY--------KVGQWVQVKILKVDAETKRISLGMKVS 358



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 206/490 (42%), Gaps = 113/490 (23%)

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVL---EISRTVRGTFHVELSLR-SSLDGM 1340
            L G VH TE                  V+ K+L   + SR  R    ++LSLR S L G 
Sbjct: 43   LRGNVHITET-----------------VRAKILSKRKTSRKHRNAATLDLSLRPSELAG- 84

Query: 1341 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1400
                 +D +  V T        E ++    V  YV+ V     +++LS  L   + + + 
Sbjct: 85   -----NDAACSVIT-------FETVTIEQSVIRYVQEVKDNWTWLVLSPHLKGCLFILDT 132

Query: 1401 SD--GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL--KTSDSRTASQSEINNLSNLH 1456
            SD    +E  ++ F +G      + SV    K+V+++L  KTSD     Q +  +L  ++
Sbjct: 133  SDDPSELERFKERFKVGDPFQCHIRSVNHERKQVDLSLHPKTSDK----QFKKGDLQFIY 188

Query: 1457 VGDI-----------------VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
             G +                 + G +K V   G F+ +   +L     +  LS   V N 
Sbjct: 189  RGTVRKVLDLKRPGRGKMGLELSGFVKNVTEKGCFVVLA-PSLEARIQLKNLSNSFVQNP 247

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN- 1558
              ++ +G+ +  +IL ++     I + + ++  ++ +   +  + E     I  + ++  
Sbjct: 248  AEMFPSGKVISGRILSIEPLSGHIEMSLTATTSQDSSGWKKFGAGEIVSGRIHNIEAFGI 307

Query: 1559 -----RSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGIS 1613
                 +S +  + S+ V ++           L ++     V  L+V+ + ++  +   +S
Sbjct: 308  FISLAKSDVASSLSILVSNLS---------TLYKVGQWVQVKILKVDAETKRISLGMKVS 358

Query: 1614 ---QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEI---------------RAAEERLLEK 1655
                 +    E + I+E+ +      + +ERE+E                 AA+E+LL+K
Sbjct: 359  YLTPEEIEPMEEEAINEEPSNTNVLMDNDEREEEDYLDLASKRFPQLCMEAAAKEKLLQK 418

Query: 1656 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1714
            D  P T D+FERL                    +AD++K R++AERAL+ I  REE EK+
Sbjct: 419  DQPPETKDDFERLC-------------------LADLDKVRAVAERALENIIYREEMEKM 459

Query: 1715 NIWVAYFNLE 1724
            NIW+AY NLE
Sbjct: 460  NIWMAYLNLE 469



 Score = 42.7 bits (99), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 112/263 (42%), Gaps = 31/263 (11%)

Query: 225 LSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAEN-SGID-----VKPGL 278
           ++ ETV     +  YV+ ++D+   L    P   G L   + +++ S ++      K G 
Sbjct: 92  ITFETVTIEQSVIRYVQEVKDNWTWLVLS-PHLKGCLFILDTSDDPSELERFKERFKVGD 150

Query: 279 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTK-DLKGIS-------IDLLVP-----GMMV 325
             Q  +RS++  RK V LS  P T  K   K DL+ I        +DL  P     G+ +
Sbjct: 151 PFQCHIRSVNHERKQVDLSLHPKTSDKQFKKGDLQFIYRGTVRKVLDLKRPGRGKMGLEL 210

Query: 326 STRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR 385
           S  V+++ E G  +         + + +L N+F   N    +   K ++ RIL ++P S 
Sbjct: 211 SGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSF-VQNPAEMFPSGKVISGRILSIEPLSG 269

Query: 386 AVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 445
            + ++L      + +       G+I   S  +      G+ + +  + V++   + +S+ 
Sbjct: 270 HIEMSLTATTSQDSSGWKKFGAGEIV--SGRIHNIEAFGIFISLAKSDVASSLSILVSN- 326

Query: 446 AEEEVRKLEKKYKEGSCVRVRIL 468
                  L   YK G  V+V+IL
Sbjct: 327 -------LSTLYKVGQWVQVKIL 342


>gi|256090782|ref|XP_002581360.1| programmed cell death protein [Schistosoma mansoni]
          Length = 769

 Score =  137 bits (345), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 174/769 (22%), Positives = 318/769 (41%), Gaps = 103/769 (13%)

Query: 139 GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNL-------LPTIFHVGQ 191
           GV+  V +  L + LP G  G     D  D   +   E+ E  +       L  +F VGQ
Sbjct: 9   GVIKSVQKLYLEVQLPHGFLGRVNIYDVSDKYTELLRESAESGIIQDDLVELSDMFKVGQ 68

Query: 192 LVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILH 251
            V C + + D+ +     ++  +SL   ++ K +  + V+  MV    V S+EDHGYI+ 
Sbjct: 69  TVRCFIKEADNSRGSGSTKRYIVSLNPKMVNKAVISKNVKPHMVFVGSVVSVEDHGYIVD 128

Query: 252 FGLPSFTGFLPRN----NLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 307
            G+     FLP++    NL   S I   P +    V  S   +++V+ +++  D+    +
Sbjct: 129 PGVARMNCFLPKDQVDVNLDIGSLIPFTPHVSDPLVNSS---SKRVLKVTTRLDSTLSVL 185

Query: 308 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDY 367
           + D + ++ D ++PG  +   +   + + ++  F  YF       ++ N       K DY
Sbjct: 186 SPDSR-VNFDCMLPGTCLHASIVKKVTSTLVAEFSEYFVSISRTHYIGN-------KEDY 237

Query: 368 NQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP--------SHVKVGDIYDQSKVVRV 419
               KV   I+ VDP+++ +  +L P+L+ N  P         S   VG  +  S V RV
Sbjct: 238 QIGAKVFVCIILVDPSTKQLTGSLLPHLV-NPIPSVLNISEMLSKCPVGTRFSGSLVERV 296

Query: 420 DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATG 479
           ++   +L+ +P T     A + I     +      K    GS +  RI     LE +A  
Sbjct: 297 NKR-AVLVKLPKTN-GLKAVIRIPKTGTKNNENF-KSLVVGSKLTCRITDHDFLENVAVA 353

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
                       +  ++KPG  V   V      G +V   G +  L P  H ++  +   
Sbjct: 354 TTNKKLLSLPFLSLHELKPGNKVSATVKRYSKTGIVVHLEGRIHGLIPYLHTTDINLKDH 413

Query: 540 GKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT-------DRLITH 590
            +KFK G ++   VL +   + ++ +T K  L+ ++L I  S+   +       ++L+  
Sbjct: 414 REKFKAGEKVSCLVLQLDECANKLILTAKPGLLNAELPIFGSHEMYSALKNGNNNQLLIV 473

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR- 649
           G+I K+ + G  +   + ++G+ PR E GL       + ++ GQV+K +    I  S   
Sbjct: 474 GFIVKVSEKGLLISGLDNIRGWIPRRETGLADEDILQTNFYRGQVLKMKFKREINISSEN 533

Query: 650 --------------INLSFMMKPTRVSED---DLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
                         ++L F  K T+  +    + V++G L    V+ V    + + +  K
Sbjct: 534 EVEKDSRNIRSKYMLSLKFHSKKTKNMQSIFLNSVQIGQLFRATVNQVQDTGISLNLYDK 593

Query: 693 GYSKGTIPT--------EHLADHLEHATVMKSV---IKPGYEFD------QLLVLDNESS 735
             +    P           L+D+  +  ++      IKPG   D       ++V+D    
Sbjct: 594 NINDTVTPVLGTGFLSFSQLSDYESNQQLLSRYIKNIKPGSTLDWNHSARNVVVIDKGKQ 653

Query: 736 NLLLSAKYSLINSAQQLP-----------SDASHIHP-----------NSVVHGYVCNII 773
            ++LSA+ +L+ +A  L            S+AS   P            S    +V +  
Sbjct: 654 TVILSARPTLVQAASDLKTNINIDVDMVDSEASDKRPGFLRTFDELQVGSQWFAWVSHHK 713

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQ---RADLSKTYYVGQSVRSNILDV 819
           + G FV F   + G AP+    D +     + ++ + VG +V + I++V
Sbjct: 714 DYGVFVHFPAGIYGLAPKHLLSDFRTQSNTNWTELFPVGATVITKIVEV 762


>gi|61402583|gb|AAH91949.1| Pdcd11 protein [Danio rerio]
          Length = 400

 Score =  137 bits (345), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 202/379 (53%), Gaps = 34/379 (8%)

Query: 54  FPRGGGHSLTQRER--DEIHAEVDAEFEA-VERGLHKKNKKKKKKTERKANETVDDLGSL 110
           FPRGG    T+R++  D I  EVD  F+   +    KK   K+ +  +   + VD+    
Sbjct: 5   FPRGG----TERKKPTDLIPHEVDNLFDTPAKAVKKKKKAVKQDEAPKPKKQKVDE---- 56

Query: 111 FGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARAADAL 167
             + I          + L++++ G  + G V EV++ ++V+ LP GL G   +    DA 
Sbjct: 57  --ENIKLNTTTTVQILHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAY 114

Query: 168 DPILDNEIEANE--DNLLPT--IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYK 223
             IL+++++ ++  + ++P   +F  G L+ C+V  LD  K+  G   + LS+    + K
Sbjct: 115 TNILNDKLDTDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKE--GHISLKLSINPKDVNK 172

Query: 224 GLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGV 283
            L+   ++  M L+  V+S+EDHGY++  G+     FLP+   + +S  D+  G  +  +
Sbjct: 173 ALNSVALKPAMTLSGCVESVEDHGYLVDIGIGGSKAFLPKK--STSSKRDLYVGQYVLVL 230

Query: 284 VRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT 343
           +  +  + +VV LS +P  + K   +  +G ++D L+PG+++   V+ +  +G++++FL+
Sbjct: 231 IEDVKDSGRVVRLSQNPQALVKACAETKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLS 290

Query: 344 YFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPS 403
            FTG VD  HL       + ++ Y++ +++ ARIL+V P++R VGL+L  +LL    PP 
Sbjct: 291 SFTGVVDFLHLDE-----DKESTYSKGQEILARILYVQPSTRQVGLSLRSHLL----PPG 341

Query: 404 HVKVGDIYDQSKVVRVDRG 422
              V D++   +V  V +G
Sbjct: 342 GA-VLDLHFSERVGEVVQG 359



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 107/261 (40%), Gaps = 45/261 (17%)

Query: 1302 PLSG-YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1360
            PLS  +  G  ++C V  +     G  H+ L L        S N  D++       K L 
Sbjct: 133  PLSKLFTPGMLIRCVVSSLDSAKEG--HISLKL--------SINPKDVN-------KALN 175

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV-- 1418
             +  L P M + G V++V   G  + +     +K  L   S     S +++  +G+ V  
Sbjct: 176  SVA-LKPAMTLSGCVESVEDHGYLVDIGIG-GSKAFLPKKS----TSSKRDLYVGQYVLV 229

Query: 1419 -------AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1471
                   +GRV+    LS+  +  +K      A   +   L NL  G ++ G +KRV  +
Sbjct: 230  LIEDVKDSGRVVR---LSQNPQALVKAC----AETKQGWTLDNLLPGLLIHGCVKRVTPH 282

Query: 1472 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1531
            GL +T   ++  G+     L ED     E+ Y  G+++  +IL V    R++ L ++S  
Sbjct: 283  GLIVTFL-SSFTGVVDFLHLDEDK----ESTYSKGQEILARILYVQPSTRQVGLSLRSHL 337

Query: 1532 FKNDADNLQMSSEEESDEAIE 1552
                   L +   E   E ++
Sbjct: 338  LPPGGAVLDLHFSERVGEVVQ 358


>gi|389585916|dbj|GAB68646.1| hypothetical protein PCYB_135200 [Plasmodium cynomolgi strain B]
          Length = 435

 Score =  136 bits (343), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 145/264 (54%), Gaps = 21/264 (7%)

Query: 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA 1719
            +P ++ERL+ S  N+S +W+ Y+A+ L    +E+AR  AERAL+TI+I +  EK NI+  
Sbjct: 186  SPADYERLLASEKNNSAIWVSYIAYHLEKGSLEEARKTAERALKTIDIHKVEEKRNIFFC 245

Query: 1720 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1779
            Y N+E  YG+  +E    VF+RAL  C+ KKV++  + + +  ++     +L  + IKKF
Sbjct: 246  YINMECSYGDKLKE----VFKRALLSCNEKKVYMHTMNVLKVNKKYNELKQLSEEAIKKF 301

Query: 1780 KHSCKVWLRRVQRLLKQQQEGVQA--VVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837
             +S K+W   ++ +    ++   A  ++ ++L  L + KH++ +   A  E+K    +RG
Sbjct: 302  HYSKKIWSHYLEIIHSAFKDEAYAHEILLKSLHCLAKRKHLRMVINAARFEYKYANKERG 361

Query: 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1897
            +S  +G                 +++ L  +  +R +FER  S     + MK +F K+L 
Sbjct: 362  KSETKG---------------EKKKLNLNQLQFVRNIFERFSSCKFKTRVMKMIFTKWLL 406

Query: 1898 YEKSVGEEERIEYVKQKAMEYVES 1921
            +EK+ G     + V++KA +YVES
Sbjct: 407  FEKNHGTVSSQKMVQKKAYDYVES 430


>gi|357460991|ref|XP_003600777.1| rRNA biogenesis protein RRP5 [Medicago truncatula]
 gi|355489825|gb|AES71028.1| rRNA biogenesis protein RRP5 [Medicago truncatula]
          Length = 180

 Score =  136 bits (343), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 117/180 (65%), Gaps = 15/180 (8%)

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1475
            K+V  RV+SV PLS  VEVTLKTS   ++S+S I++L   HVGD++ G IK VE  GLFI
Sbjct: 4    KVVNNRVISVAPLSNCVEVTLKTSTFSSSSKSVISDLGKFHVGDVISGSIKSVEPSGLFI 63

Query: 1476 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1535
             I+NT +VGLCHVSE+S+ H+DNIE  + AGEKV   +LKVD+E+  ISLGMK SY +  
Sbjct: 64   AIDNTKVVGLCHVSEISDKHIDNIEAKFGAGEKVNAIVLKVDEERHGISLGMKDSYMRGK 123

Query: 1536 ADNLQMSSEEESDEAIEE----VGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESR 1591
               LQ+ S+E SDE I +    + S +R S          +MD++SE     +L+Q + R
Sbjct: 124  T-VLQIPSDEGSDEPIADGMKSISSTSRPS----------NMDIDSETDQFPILSQAQIR 172


>gi|312075992|ref|XP_003140662.1| hypothetical protein LOAG_05077 [Loa loa]
          Length = 1279

 Score =  136 bits (342), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 231/962 (24%), Positives = 414/962 (43%), Gaps = 123/962 (12%)

Query: 233  GMVLTAYVKSIEDHGYILHFGLPS--FTGFLPRNNLA----ENSGIDVKPGLLLQGVVRS 286
            G+VL   V+S+ED G I++ GL S    GFL   +L     + S I+ +P LL      S
Sbjct: 152  GLVLNGVVESVEDKGVIINLGLQSVELKGFLAEKHLPPTFQKESLIEGQPLLLRIQNENS 211

Query: 287  IDRTRKVVYLSSDPDTVSKCVTK-DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYF 345
             ++  +VV LS+ P+   +C+    +K + ++ L+PG ++         +GV ++     
Sbjct: 212  SNKKSRVVSLSAVPEM--ECLDDIAVKNLKLNDLMPGTLLLVNPLQPTASGVYVNIGNDI 269

Query: 346  TGTVDIFHLQNTFPTTNWKND-YNQHKKVNARILFVDPTSRAVGLTLNPYLLH-----NR 399
             G V+  HL        ++ND +   K     ++F    S  + L  +P ++       R
Sbjct: 270  KGYVNRQHL-----PPRYRNDSFKCLKSFKTIVMFCQQNSNLLALNGHPDIIAASKFAKR 324

Query: 400  APPSHVKVGDIYDQSKVVRVDRG----LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK 455
                +V  GDI  + KV  V++       L+L          A+   +++ E+ V     
Sbjct: 325  TNFENVHTGDII-ECKVSNVNKNGDVNFDLVLHGDERNSLVAAFARKTEL-EDHV----- 377

Query: 456  KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
            +YK+G+  + R+L F+ +E +     +       +    D  PGM V  KV +V   G  
Sbjct: 378  EYKKGTIHQTRVLSFKMVERILIVATRKDILAQKMVCVKDAVPGMKVIAKVESVLPKGLF 437

Query: 516  VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSK 573
            V+    +    P  H+S+  I +  K F VG EL  R+L V    +R+ +T+K++L  +K
Sbjct: 438  VKIYNSIPGFIPKIHLSDKLITRIDKHFAVGDELTCRILTVNEAKERLILTNKQSLTTNK 497

Query: 574  LAILSSYAEATDRLITHGWITKIEKH---GCFVRFYNGVQGFA-PRSELGLDPGCEPSSM 629
              ++ SYAE T   IT G+I  + +H   G  + FY G +GF  P+    L       + 
Sbjct: 498  DTVIKSYAEVTTNAITTGYI--VSQHPSGGLIIGFYGGTRGFMFPKETERL------GTN 549

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFM-----------MKPTRVSEDDLVKLGSLVSGVV- 677
              VG  V+ R++S  P   R+ ++              +P  +   + V   ++V  ++ 
Sbjct: 550  IKVGLTVRVRVVSVDPQRGRMLVAVANAANDGTEIAKAQPFLIDGGNSVSFSAVVMNILS 609

Query: 678  --DVVTPNAVVVYVI-----AKGYSKGTIPTEHLADHLE--HATVMKSVIKPGYEFDQLL 728
              +   PN ++   +       G  K  IP E L+D L+   A++ +S I  G    ++ 
Sbjct: 610  NDNKSKPNEILNVTVRLGKKLGGKVKAFIPKELLSDCLDLPFASLSES-IALGSVLPKVT 668

Query: 729  VLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNII----ETGCFVRFL 782
            VL + + NL +++K  +I+  ++ P  +   ++    +V G   NII    E G FV   
Sbjct: 669  VLGDVAGNLKVTSKRFMIDWLEKHPRITGLQNLTKGELVCG---NIIRKHKEMGYFVELA 725

Query: 783  GRLTGFAP----RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            G     AP    R  A+     +L     +GQ+V + +  V+ E  R  L L    C   
Sbjct: 726  GGSALTAPARFIRPMALPVSMQELQ----IGQTVVARVSSVDLERKRFALILDAHLCIPP 781

Query: 839  DAS---FMQE--HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
             A    F     H+ LEE +    ++  N S++       IG  I+ KV E ++  VVV 
Sbjct: 782  GAELDYFAPSIVHYSLEE-LNWFIANNPNYSQVPE-----IGECIDIKVVEISECSVVVQ 835

Query: 894  FEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID-RFREANSN 952
            +  + D+ G   ++      ++ GS  +A +LDV    +L    L    +D   +  N  
Sbjct: 836  YASNPDLKGCAINNT---NILQKGSCAKALVLDV----KLPTCELVLFLLDGGVQHLNEK 888

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKE-NYLVLSLPEYNH---SIGYASVSDYNTQ 1008
            +       K+E    + +H+   A+  +  E +  V+S+P   H   +I    + + + Q
Sbjct: 889  KLQSLLCSKKEFDAKIWLHKREYAVATVETEKSAFVVSIPMRLHPNVNITSVDLDENSNQ 948

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYD---VGS 1065
                 + ++G  +I T M +         L+  K  +  +++  K+ K+   Y    +G 
Sbjct: 949  CIITPKLISGNVMIGTAMEILKKYG----LIHRKFKTPIKSAVKKKLKQFKIYTAKVMGM 1004

Query: 1066 LVQAEITEIKPLELRLKFGIGFHGRIHITEVN----DDKSNVVENLFSNFKIGQTVTARI 1121
              + ++     LEL      G  GR+H +E +    D  S  +++     K G+TV  +I
Sbjct: 1005 WSKGDLYNAIELEL----PDGSIGRLHASEFDESFLDQTSQPIQSFLKKRK-GKTVNVKI 1059

Query: 1122 IA 1123
            + 
Sbjct: 1060 MC 1061


>gi|302824310|ref|XP_002993799.1| hypothetical protein SELMODRAFT_431837 [Selaginella moellendorffii]
 gi|300138362|gb|EFJ05133.1| hypothetical protein SELMODRAFT_431837 [Selaginella moellendorffii]
          Length = 429

 Score =  130 bits (327), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 128/214 (59%), Gaps = 38/214 (17%)

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P+    IGK          PLS 
Sbjct: 207  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPD----IGK----------PLSG 252

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV------G 1484
             +E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++        
Sbjct: 253  HIEMSLAATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLAESDVFLVCAPGC 307

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1544
            LCHV+E+S D + ++ T+Y+ G+ V+VKILKVD E +RISLGMK+SY       L+   E
Sbjct: 308  LCHVAEVSYDFIQDLSTLYKVGQWVQVKILKVDGETKRISLGMKASYL-----TLEDGIE 362

Query: 1545 EESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1578
               +EAI E  S        N++V ++++D+ S+
Sbjct: 363  PMEEEAINEEPS--------NTNVLMREVDLASK 388



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 138/313 (44%), Gaps = 86/313 (27%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            V+I Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F+ RF +G     H+
Sbjct: 93   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCHI 152

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
             S+N E+K + L L P     SDK              +GD++G RI+++ +GVGG  VQ
Sbjct: 153  RSVNHERKQVDLSLHP---KTSDKQ-----------FKKGDLLGRRITRVFAGVGGHTVQ 198

Query: 1281 ------------------------IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
                                    + P L  R+    L N  V +P              
Sbjct: 199  SRWESFGKVHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNP-------------- 244

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
             +I + + G  H+E+SL       ++T S D S             +      IV G + 
Sbjct: 245  -DIGKPLSG--HIEMSL-------AATTSQDSS-----------GWKKFGAGEIVSGRIH 283

Query: 1377 NVTSKGCFIMLSRKLDAKVLL----------SNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
            N+ + G FI L+   ++ V L          + +S  +++     + +G+ V  ++L V+
Sbjct: 284  NIEAFGIFISLA---ESDVFLVCAPGCLCHVAEVSYDFIQDLSTLYKVGQWVQVKILKVD 340

Query: 1427 PLSKRVEVTLKTS 1439
              +KR+ + +K S
Sbjct: 341  GETKRISLGMKAS 353



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 27/32 (84%), Gaps = 1/32 (3%)

Query: 1647 AAEERLLEKD-APRTPDEFERLVRSSPNSSFV 1677
            AA+E+LL+KD  P T D+FERLV +SPNSS++
Sbjct: 398  AAKEKLLQKDQPPETMDDFERLVAASPNSSYM 429


>gi|302776692|ref|XP_002971496.1| hypothetical protein SELMODRAFT_412245 [Selaginella moellendorffii]
 gi|300160628|gb|EFJ27245.1| hypothetical protein SELMODRAFT_412245 [Selaginella moellendorffii]
          Length = 393

 Score =  129 bits (324), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 127/217 (58%), Gaps = 39/217 (17%)

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            V G+VKNVT KGCF++L+  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 208  VHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 267

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
             +E++L  + S+ +S                 G  K    +G            LCHVSE
Sbjct: 268  HIEMSLTATTSQDSS-----------------GWKK----FGC-----------LCHVSE 295

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +S D + ++ T+Y+  + V+VKILKVD E +RISLGMK+SY   + D +    E   +EA
Sbjct: 296  VSYDFIQDLSTLYKVSQWVQVKILKVDAETKRISLGMKASYLTPE-DGI----EPMEEEA 350

Query: 1551 IEEVGSYNRSSLLENSSVAVQD-MDMESEDGGSLVLA 1586
            I E  S N + L++N     +D +D+ S+    L ++
Sbjct: 351  INEEPS-NTNVLMDNDEREEEDYLDLASKRFPQLCMS 386



 Score = 79.0 bits (193), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 119/262 (45%), Gaps = 46/262 (17%)

Query: 1106 NLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
            +L  N  I +TV A+I++K       + +   +LS++PS L  ++    ++  E  V+I 
Sbjct: 42   SLRGNVHITETVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVITFE-TVTIE 100

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224
            Q    YV +V + WA L +S HLK  LFILD++ +PSEL+ F+     G     +     
Sbjct: 101  QSDIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFRALQSRGPVPVPYK---K 157

Query: 1225 KEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ---- 1280
             E + + L L P       KT D      + F  +GD++  RI+++ +GVGG  VQ    
Sbjct: 158  CEPRKVDLSLHP-------KTSD------EQF-KKGDLLDRRITRVFAGVGGHTVQGRWE 203

Query: 1281 --------------------IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
                                + P L  R+    L N  V +P   +  G+ +  ++L I 
Sbjct: 204  SFGKVHGFVKNVTEKGCFVVLAPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIE 263

Query: 1321 RTVRGTFHVELSLRSSLDGMSS 1342
                 + H+E+SL ++    SS
Sbjct: 264  PL---SGHIEMSLTATTSQDSS 282


>gi|391342289|ref|XP_003745453.1| PREDICTED: protein RRP5 homolog [Metaseiulus occidentalis]
          Length = 1008

 Score =  129 bits (324), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 168/716 (23%), Positives = 285/716 (39%), Gaps = 92/716 (12%)

Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGL-----------------RGLARAADALD 168
           +T K+I  GM L G V  V E  L I LPG +                 R  A ++    
Sbjct: 102 LTHKSIQEGMVLLGAVHYVQENSLRIALPGCVAQLPLNQLSHPYNDLVQRWRAESSAVKR 161

Query: 169 PILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLE 228
             L  + +  +   L  ++ VG ++  +VL      K  G   I LS   + +  G++ E
Sbjct: 162 RGLGQKAQPEKLMRLDAMYKVGHIIKVVVLS-----KNSGN--INLSALCNHVNGGITRE 214

Query: 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSF-TGFLPRNNLAENSGIDVKPGLLLQGVVRSI 287
           T+++GM+L A V S+ED+GY +  G+    + F+  +N  E   +     + L  V +S 
Sbjct: 215 TLRDGMILQAAVASVEDYGYSIELGIDGLASAFVSADNFTEVMYVG---QIFLVRVSKSH 271

Query: 288 DRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTG 347
               K V     P    + V KD    +++ + PG++    V    ENGV L+    F G
Sbjct: 272 GGRLKFV-----PHHFEE-VAKD-NDWNLNNVTPGLVAEGTVLQSDENGVCLAL---FDG 321

Query: 348 TVD--IFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH- 404
           +V   +   Q         ND     KV   +++  P        LN      R PP H 
Sbjct: 322 SVTACVEPRQCLRGAAVSIND-----KVRVILMYTHPI-------LNTVYCSMRIPPVHP 369

Query: 405 ---------VKVGDIYDQSKVVRVDRGLGLLLDIP--STPVSTPAYVTISDVAEEEVRKL 453
                    + +G +  ++ VV+V     + LDIP  ++  +  A     +V+++E    
Sbjct: 370 ADPFKEFHGLSLGQLVKKAVVVQVTSSF-VKLDIPIKNSRHTVCAIAAKPNVSDDEAADP 428

Query: 454 EKKYKEGSCVRVRILGFRHLEG-LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
              +  G     R++G    EG L   +  +   EG  +T  ++  G ++  KV   +  
Sbjct: 429 SDVFSVGQIAPCRVIGMSLFEGELYVSLRHSVVIEGCYYTEHELYVGRILPAKVKYTNDC 488

Query: 513 GAIVQFPGGVKALCPLPHMSEF-------EIVKPGKKFKVGAELVFRVLGVK--SKRITV 563
           G + +   G  A C     S         E   PGK  +V      R +  K    R  V
Sbjct: 489 GIVFEICPGTIAFCDFTEASPILNKSNVAEKYPPGKPVQVA----IRYINGKHYPPRYFV 544

Query: 564 THKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG 623
           T  K L+KSK  I+  Y E     I+ G +   E+ G  + FYN V+G+ P  +L     
Sbjct: 545 TCNKQLIKSKHGIIDRYDEGNVGKISDGIVLLTERRGLLLGFYNKVRGWVPEEQLP-HSA 603

Query: 624 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG-------- 675
             P  ++  GQV+  ++++  P + R+ LS     ++ S      +G+ +S         
Sbjct: 604 SRPDEVFRKGQVLSAKVLNVTPEASRMTLSLRCVDSKESTGQTDDVGAGISTDRRYIFEG 663

Query: 676 ----VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLD 731
                  VV      + ++ +G+ K ++P EHL+D  + +  +   I  G   D+L V  
Sbjct: 664 KTHLEALVVDKEGTCLKIVVEGFGKSSLPAEHLSDFPDLSKSLLERINIGDRLDELAVFG 723

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           +     + S K  +        S+A  I   +++   V  +   G  V     L+ 
Sbjct: 724 SSEGTTIFSMKPLVAQVLASCGSEAMKITEGAILPALVKKVTGRGVMVSLPNNLSA 779


>gi|355709772|gb|AES03703.1| programmed cell death 11 [Mustela putorius furo]
          Length = 399

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 201/418 (48%), Gaps = 40/418 (9%)

Query: 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
           ++ +GC V+FYN VQG  P+ EL  +   +P  +++ GQVVK  +++  P+  R+ LSF 
Sbjct: 1   VKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNCEPSKERMLLSFK 60

Query: 656 MKPTRVSED--------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH 707
           +      E           V LG LV   V   T + + V V+    +   +PT HL+DH
Sbjct: 61  LLSDPKKEHLGHSQKKRRTVSLGQLVDVKVLEKTKDGLEVAVLPYN-TPAFLPTPHLSDH 119

Query: 708 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVV 765
           + +  ++   ++ G    ++L L      +LL  K +L+++ +  Q P   + IHP  ++
Sbjct: 120 VANGPLLYHWLQTGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKSFAEIHPGMLL 179

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            G+V +I + G FV+F   L+G AP++   D      S  +  GQ+V + + +V+ E  R
Sbjct: 180 IGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQR 239

Query: 826 ITLSLKQSCCSSTDASFMQEHF---LLEEK--IAMLQSSKHNGSELKWVEGFIIGSVIEG 880
           + LSL+ S C   D +          LEE+  +  L S++ +   ++ +     G V++ 
Sbjct: 240 MLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNR-DSVLIQTLAEMTPGMVLDL 298

Query: 881 KVHESNDFGVVVSFEEHSDVYGFI---THHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
           +V E  + G VV F E   V G +   + +  AG  VE G   +  IL+V   +  V +S
Sbjct: 299 EVQEVLEDGSVV-FSE-GPVPGLVLRASRYHRAGQEVEPGQKKKVVILNVDMLKLEVHVS 356

Query: 938 LKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 995
           L    +        NR+A+K K+  E            A+V+ ++E++ V SL E  H
Sbjct: 357 LCHDLV--------NRRAKKLKKGSE----------YQAVVQHLEESFAVASLVETGH 396



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
            + + +H G ++IG +K ++ YG+F+    + L GL   + +S+  V +    +  G+ V 
Sbjct: 169  SFAEIHPGMLLIGFVKSIKDYGVFVQFP-SGLSGLAPKAIMSDKFVTSTSDHFVEGQTVV 227

Query: 1511 VKILKVDKEKRRISLGMKSS 1530
             K+  VD+EK+R+ L ++ S
Sbjct: 228  AKVTNVDEEKQRMLLSLRLS 247



 Score = 40.8 bits (94), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 35/242 (14%)

Query: 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415
            G+  +   ++ P M++ G+VK++   G F+     L      + +SD +V S    F  G
Sbjct: 164  GQDPKSFAEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEG 223

Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDS-------------------RTASQSEINN----- 1451
            + V  +V +V+   +R+ ++L+ SD                    R   +S ++N     
Sbjct: 224  QTVVAKVTNVDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVL 283

Query: 1452 ---LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1508
               L+ +  G ++  +++ V   G  +  E   + GL  V   S  H    E     G+K
Sbjct: 284  IQTLAEMTPGMVLDLEVQEVLEDGSVVFSEGP-VPGL--VLRASRYHRAGQEV--EPGQK 338

Query: 1509 VKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES-DEAIEEVGSYNRSSLLENSS 1567
             KV IL VD  K  + + +        A  L+  SE ++  + +EE  S+  +SL+E   
Sbjct: 339  KKVVILNVDMLKLEVHVSLCHDLVNRRAKKLKKGSEYQAVVQHLEE--SFAVASLVETGH 396

Query: 1568 VA 1569
            +A
Sbjct: 397  LA 398


>gi|302822837|ref|XP_002993074.1| hypothetical protein SELMODRAFT_431207 [Selaginella moellendorffii]
 gi|300139074|gb|EFJ05822.1| hypothetical protein SELMODRAFT_431207 [Selaginella moellendorffii]
          Length = 417

 Score =  128 bits (322), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 132/250 (52%), Gaps = 62/250 (24%)

Query: 1306 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1365
            + EGQFV+C+VL++ R  RG   +ELS                                 
Sbjct: 139  FTEGQFVRCRVLDLKRPGRGKMGLELS--------------------------------- 165

Query: 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1425
                   G+VKN   K         L+A++ L NLS+ +V++P + FP GK+++GR+LS+
Sbjct: 166  -------GFVKNGRRK-------VSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSI 211

Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV-- 1483
            EPLS  +E++L  + S+ +S            G+IV G+I  +E++ +FI++  +++   
Sbjct: 212  EPLSGHIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFRIFISLAESDVFLV 266

Query: 1484 ----GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1539
                 LCHVSE+  D + ++ T+Y+ G+ V+VKIL   KE +RISLGMK+SY   + D +
Sbjct: 267  CAPGCLCHVSEVFYDFIQDLSTLYKVGQWVQVKIL---KETKRISLGMKASYLTPE-DGI 322

Query: 1540 QMSSEEESDE 1549
            +   EE  +E
Sbjct: 323  ETMEEEAINE 332



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1206
            V+I Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F
Sbjct: 81   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERF 126


>gi|164660949|ref|XP_001731597.1| hypothetical protein MGL_0865 [Malassezia globosa CBS 7966]
 gi|159105498|gb|EDP44383.1| hypothetical protein MGL_0865 [Malassezia globosa CBS 7966]
          Length = 1217

 Score =  126 bits (317), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 135/256 (52%), Gaps = 13/256 (5%)

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            LV  +G     R+H TE  +   +  L   D G    C VL + +  R     ++S+R S
Sbjct: 820  LVSLLGTPCRARLHATECSDSLANATLP--DVGDQCTCIVLSVRKKRR---EADVSIRPS 874

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
                    S D++  VD P   ++    L   M ++G VK VT+ G ++ L    DA+V+
Sbjct: 875  ----RLAPSDDVNASVDDP--VVDSTAQLEIGMHIRGLVKAVTNHGVYVSLGPHTDARVM 928

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1456
            +  L D YV+    +F +G+ V G +L +EP + ++E++LK S       S     S +H
Sbjct: 929  IKELFDEYVKDFRTKFQVGQCVRGTILQIEP-NGQIELSLKKSRLEGVKPSA-GAWSKIH 986

Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
             G+ V   ++ +  YG+F+ ++ T++ GLCH SELS++   N    +  G++VK  +LK+
Sbjct: 987  EGEKVKAHVRGITEYGIFLQVDGTDVSGLCHKSELSDNKSANAIRAFAVGDRVKAVVLKM 1046

Query: 1517 DKEKRRISLGMKSSYF 1532
            D +KRR++ G+K SYF
Sbjct: 1047 DADKRRVAFGLKPSYF 1062



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 157/726 (21%), Positives = 287/726 (39%), Gaps = 106/726 (14%)

Query: 6   RKSQKKSSKDGPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQR 65
           ++S+  +  D P+  + + +  K  +  +   + A+   +        FPRGGG  LT  
Sbjct: 2   KRSRSIAGHDDPQPKRKAPSHTKREEAPVAPHIAARPQMMTS------FPRGGGTGLTPV 55

Query: 66  ERDEIHAEVDAEFEAVERGLHKKNKKKK---KKTERKANETVDDLGSLFGDGISGKLPRY 122
           E  +   E   E  A +    + +++K+   K T +K N   +    +  D +  +L  Y
Sbjct: 56  EYRQSVLEGRQESAASDDLFQESSQRKRVKTKSTTQKKNRKTEAKTDVPKDRVRVELLNY 115

Query: 123 ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADALDPILDNEI 175
                 K +  G K++G +  ++   LV+ +   L           R  D L   LD E 
Sbjct: 116 ------KRLLPGTKVFGTILAIHPLALVVSICDQLLAHVPVTSVSKRLTDRLQSALDEEE 169

Query: 176 EANEDNL------------------------LPTIFHVGQLVSCIV--LQLDDDKKEIG- 208
           +  E +                         L  IF VGQ V   V  +     K++ G 
Sbjct: 170 KDEESDGEDIHETEEDEEEEGEDRDDSSPPELHEIFSVGQWVRASVESVTAAGSKRQWGM 229

Query: 209 ----------KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL-PSF 257
                      +++ L++  +++ +G+    +  G VL+A V+S ED+GY L  G+    
Sbjct: 230 GREGGEYERESQRVQLTMEPTIVNEGIRASDLSPGYVLSAAVQSPEDYGYTLDLGINDDV 289

Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISID 317
            GFLP  +      + +     + G  R++   R  +  S +P  V+   ++        
Sbjct: 290 HGFLPTKDRLRVGSVVLVEVSSVDG--RAV---RCQLATSGEPAPVTTAPSQSA------ 338

Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARI 377
            ++PG+ V   + S +  G+ +     + GTVD FH+       +        KK+ AR+
Sbjct: 339 -MLPGVPVRALITSHVPQGLSVKLFGMWDGTVDSFHVPRGLAHDDAA--LAPGKKIMARV 395

Query: 378 LFVDPT--------------SRAVGLTLNPYLLH-------NRAPPSHVKVGDIYDQSKV 416
           L+  P               +R +GL+   +++           P +H     +  + +V
Sbjct: 396 LWNMPADYEQAQEASIDAVGARRIGLSCVSHVVSLETPSAAGSVPLTHAFPIGMQLRVRV 455

Query: 417 VRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEK---KYKEGSCVRVRILGFRHL 473
             V R  GL+ ++P   +  PA+V IS V++E +  L      ++ G+    R+ G    
Sbjct: 456 QAVFREWGLVCEVPGQDI--PAFVHISSVSDEHIDTLSATSGPWRVGTEHEARVTGHALT 513

Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
           + L    ++AS         S+V  G VV+  +  V      V+  G V  +    H S+
Sbjct: 514 DCLLMMSMRASVLSKEFMRVSEVPIGQVVRVSIRKVTPKAIFVRMNGNVDGVVFPMHFSD 573

Query: 534 FEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHG 591
             +  P KK+K   EL  R++       RI +T K++L+ S L +L+   +    ++T+ 
Sbjct: 574 VRLTHPEKKYKPNLELKARIIHTDPMRNRIVLTLKRSLITSDLPLLAKLEDVRVGVVTNA 633

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHV---GQVVKCRIMSSIPASR 648
            + K       V     ++   P +E   D       +  +   G+VVK RI    P + 
Sbjct: 634 VVLKQLPASMLVELGGTLRAVVPFAEAS-DTAMTSEQLGELNPTGKVVKVRITKFEPETG 692

Query: 649 RINLSF 654
           RI  S 
Sbjct: 693 RIMASM 698



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 115/541 (21%), Positives = 212/541 (39%), Gaps = 48/541 (8%)

Query: 322  GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
            G +V   ++ +    + +       G V   H  +    T+ +  Y  + ++ ARI+  D
Sbjct: 539  GQVVRVSIRKVTPKAIFVRMNGNVDGVVFPMHFSDVR-LTHPEKKYKPNLELKARIIHTD 597

Query: 382  PTSRAVGLTLNPYLLHNRAPP----SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
            P    + LTL   L+ +  P       V+VG + +   VV       +L+++  T  +  
Sbjct: 598  PMRNRIVLTLKRSLITSDLPLLAKLEDVRVGVVTN--AVVLKQLPASMLVELGGTLRAVV 655

Query: 438  AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSD-V 496
             +   SD A     +L +    G  V+VRI  F    G     +K ++   L   + D V
Sbjct: 656  PFAEASDTAMTS-EQLGELNPTGKVVKVRITKFEPETGRIMASMKQASSVYLQRLNVDAV 714

Query: 497  KPGMVVKGKVIAV-DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK-KFKVGAELVFRVL 554
              G  V  +     D    +V  P G +AL  L  +S    V   K +  + A  +   L
Sbjct: 715  DVGERVAARFAGWQDDVAILVLEPSGTRALLSLHDLSRQRRVDADKVRASLAANELLSDL 774

Query: 555  GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK--IEKHGCFVRFYNGVQGF 612
             V         KK  VK  + +     +A+  +   G      +E H   +     + G 
Sbjct: 775  YVA--------KKNAVKGYVVLSYESPDASKTVEVGGRYEARVVETHHDKLYSLVSLLGT 826

Query: 613  APRSELGLDPGCEPS----SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV- 667
              R+ L     C  S    ++  VG    C ++S     R  ++S  ++P+R++  D V 
Sbjct: 827  PCRARLHATE-CSDSLANATLPDVGDQCTCIVLSVRKKRREADVS--IRPSRLAPSDDVN 883

Query: 668  --------------KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATV 713
                          ++G  + G+V  VT + V  YV    ++   +  + L D  E+   
Sbjct: 884  ASVDDPVVDSTAQLEIGMHIRGLVKAVTNHGV--YVSLGPHTDARVMIKELFD--EYVKD 939

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
             ++  + G      ++    +  + LS K S +   +      S IH    V  +V  I 
Sbjct: 940  FRTKFQVGQCVRGTILQIEPNGQIELSLKKSRLEGVKPSAGAWSKIHEGEKVKAHVRGIT 999

Query: 774  ETGCFVRFLGR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            E G F++  G  ++G   +S+  D + A+  + + VG  V++ +L ++++  R+   LK 
Sbjct: 1000 EYGIFLQVDGTDVSGLCHKSELSDNKSANAIRAFAVGDRVKAVVLKMDADKRRVAFGLKP 1059

Query: 833  S 833
            S
Sbjct: 1060 S 1060



 Score = 48.1 bits (113), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 83/176 (47%), Gaps = 4/176 (2%)

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            K   ++ ++    +V+  ++ VT K  F+ ++  +D  V   + SD  +  PEK++    
Sbjct: 528  KEFMRVSEVPIGQVVRVSIRKVTPKAIFVRMNGNVDGVVFPMHFSDVRLTHPEKKYKPNL 587

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
             +  R++  +P+  R+ +TLK S   T+    +  L ++ VG +    + +     + + 
Sbjct: 588  ELKARIIHTDPMRNRIVLTLKRS-LITSDLPLLAKLEDVRVGVVTNAVVLKQLPASMLVE 646

Query: 1477 IENTNLVGLCHVSELSEDHV--DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  T L  +   +E S+  +  + +  +   G+ VKV+I K + E  RI   MK +
Sbjct: 647  LGGT-LRAVVPFAEASDTAMTSEQLGELNPTGKVVKVRITKFEPETGRIMASMKQA 701



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 638 CRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKG 697
           C +M S+ AS  ++  FM    RVSE   V +G +V   +  VTP A+  +V   G   G
Sbjct: 515 CLLMMSMRASV-LSKEFM----RVSE---VPIGQVVRVSIRKVTPKAI--FVRMNGNVDG 564

Query: 698 TIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSD 755
            +   H +D  L H    +   KP  E    ++  D   + ++L+ K SLI S   L + 
Sbjct: 565 VVFPMHFSDVRLTHP---EKKYKPNLELKARIIHTDPMRNRIVLTLKRSLITSDLPLLAK 621

Query: 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-----QRADLSKTYYVGQ 810
              +    V +  V   +     V   G L    P ++A D      Q  +L+ T   G+
Sbjct: 622 LEDVRVGVVTNAVVLKQLPASMLVELGGTLRAVVPFAEASDTAMTSEQLGELNPT---GK 678

Query: 811 SVRSNILDVNSETGRITLSLKQS 833
            V+  I     ETGRI  S+KQ+
Sbjct: 679 VVKVRITKFEPETGRIMASMKQA 701


>gi|291000969|ref|XP_002683051.1| RRP5 protein [Naegleria gruberi]
 gi|284096680|gb|EFC50307.1| RRP5 protein [Naegleria gruberi]
          Length = 290

 Score =  122 bits (305), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 145/288 (50%), Gaps = 54/288 (18%)

Query: 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL--ENEYGNPPEEAVVKVF 1739
            M FML+    EKA+ I ERA+  I+  +ENE+ N+W A  +L   N  GN     V  V 
Sbjct: 1    MTFMLNTYGFEKAKEIGERAVNRIHFSKENERFNLWSAILSLYVSNNRGN-----VDSVI 55

Query: 1740 QRALQYCDPKKVHLALL-------GLYERTEQ----------------------NKLA-- 1768
            ++ALQ     K HL  L        LYE+ +Q                      NK A  
Sbjct: 56   EKALQ--GASKPHLIYLQYAKILNKLYEKKKQRMDATEEEEDSQSENEEDEELKNKRANE 113

Query: 1769 -DELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV----------QAVVQRALLSLPRHKH 1817
             +ELL K+ + ++ +CK + R  +++ ++ ++            + V+ R+L   P+ +H
Sbjct: 114  LEELLTKIDQVYRKACKKY-RNEKKVFEEYEQWCISTLKDIKKAEHVLNRSLKVYPQKEH 172

Query: 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR-LGDVDLIRGLFE 1876
            I   S+ AI+ +K       R+  E I+   PKR+D WSIYLD E +   D   IR LFE
Sbjct: 173  ISLKSKFAIILYKCENTIEARNAMENIIQNSPKRSDAWSIYLDCEQQHTNDQRYIRELFE 232

Query: 1877 RAISL-SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923
            R  +L +L  KKMK   ++YL++E   G+ ER E+VKQ A EY++S L
Sbjct: 233  RVCNLTTLSTKKMKSFLQRYLKFETQHGDSERQEHVKQIAKEYIQSKL 280


>gi|167380574|ref|XP_001735374.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165902669|gb|EDR28428.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 202

 Score =  121 bits (304), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 120/202 (59%), Gaps = 5/202 (2%)

Query: 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1778
            A   LE  +G+  E+++ KV+  AL+ CD KK+ L ++  +   E+ +  ++++  + KK
Sbjct: 2    ALMKLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMI--HIYKEKKEEEEKIIRIIFKK 57

Query: 1779 FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837
             K SCKV+ +    L++  ++E ++  + +A  +L + K I      A LE+K G  D+G
Sbjct: 58   VKGSCKVYKKYCNFLMRNNREEEIKNTISKAKTTLDKKKMISLEIHIARLEYKYGSVDKG 117

Query: 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1897
            RSMFE IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    KYLE
Sbjct: 118  RSMFEDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLSTKTMKTFLTKYLE 177

Query: 1898 YEKSVGEEERIEYVKQKAMEYV 1919
            +E   G+E + E+V+  A  +V
Sbjct: 178  FEIKYGDESKQEHVRDIAKSFV 199


>gi|167393838|ref|XP_001740734.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165895030|gb|EDR22836.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 202

 Score =  121 bits (303), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 117/202 (57%), Gaps = 5/202 (2%)

Query: 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1778
            A   LE  +G+  E+++ KV+  AL+ CD KK+ L ++ +Y+  ++ +     +  + KK
Sbjct: 2    ALIQLEANHGD--EKSLKKVYNEALEVCDRKKIMLHMIHIYKEKKEEEEKINRI--IFKK 57

Query: 1779 FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837
             K SCKV+ +    +++  ++E  +  + +A  +L + K I      A LE+K G  D+G
Sbjct: 58   VKGSCKVYKKYCNFIMRNNREEENKNTISKAKTTLDKKKMISLEIHIARLEYKYGSVDKG 117

Query: 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1897
            RSMFE IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    KYLE
Sbjct: 118  RSMFEDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLSTKTMKTFLTKYLE 177

Query: 1898 YEKSVGEEERIEYVKQKAMEYV 1919
            +E   G+E + E V+  A  +V
Sbjct: 178  FEIKYGDESKQENVRDIAKSFV 199


>gi|154274013|ref|XP_001537858.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415466|gb|EDN10819.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 799

 Score =  115 bits (288), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 149/605 (24%), Positives = 263/605 (43%), Gaps = 41/605 (6%)

Query: 187 FHVGQLVSCIVLQLDDD---KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSI 243
           F +GQ +   V   + +    K  GK+ I LS+       GLS   +     + A V S+
Sbjct: 189 FKLGQYLRAAVTSTETEVNHGKIKGKKHIELSVDPREANSGLSKSDLVVNATVQASVLSL 248

Query: 244 EDHGYILHFGLP--SFTGFLPRNNLAEN-SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
           EDHG ++  GL      GF+    +  +   + +K G +   VV   +    VV LS++ 
Sbjct: 249 EDHGLVMDLGLEDGQTRGFMSSKEIPHDLELLQIKEGTVFLCVVTGHNANGNVVKLSANL 308

Query: 301 DTVSKCVTKDL--KGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358
            T              +I   +PG      +  +   G+    +      VDI     T 
Sbjct: 309 PTAGSIKKSHFLTSAPTIHSFLPGTAAEILLTQVTSTGMAGKIMGMLDAVVDIVQSGATA 368

Query: 359 PTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN---------PYLLHNRAPPSHV-KVG 408
              +    Y+   K+  R++   PT+  + L  +         P +L  ++    V  + 
Sbjct: 369 GKEDITARYHVGAKIKGRLICTFPTAEPLKLGFSILDHVVKFMPTVLDRKSSCEVVPAIS 428

Query: 409 DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL---EKKYKEGSCVRV 465
            I  + KV +V+ GLG+             +V IS +++++V  +   +  Y   S    
Sbjct: 429 AIVPEVKVTKVEPGLGVYAQFNDKHY---GFVHISRLSDDKVDSISSTQGPYMVDSTHEA 485

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV----IAVDSF-GAIVQFPG 520
           RI+GF  L+ L    L+    +       DV  G VVKGK+    I  D   G IV    
Sbjct: 486 RIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLAD 545

Query: 521 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILS 578
           G+  L P  HMS+ ++  P KKF+ G ++  R+L V  + +++ +T KKTL+ S+ +   
Sbjct: 546 GISGLVPGMHMSDTKLQHPEKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWC 605

Query: 579 SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
            Y++      + G I  I+ HG  V+FY  V+GF P SE+      +P+  +++GQVV  
Sbjct: 606 DYSDILPGNKSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNV 665

Query: 639 RIMSSIPASRRINLSF--MMKPTRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGY 694
             ++     R++ +S    +  T   +  L  +  G+ VSG V   +   +++ +   G 
Sbjct: 666 HALNVDAELRKLVVSCKDQLSSTEAYKRALEHIHPGNTVSGTVFEKSNEDILLKLEDSGL 725

Query: 695 SKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL--SAKYSLINSAQ- 750
               +  EH++D          + I+ G + ++LL+L+ + S+ L+  + K SL  + Q 
Sbjct: 726 V-ARLNAEHVSDGQASRNGAALARIRVGQKLNELLILNIQKSHQLIKVTNKPSLKQARQR 784

Query: 751 -QLPS 754
            +LP+
Sbjct: 785 GELPT 789



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 144/324 (44%), Gaps = 42/324 (12%)

Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRG 1325
            +++K+  G+G +  Q     YG VH + L +                  KV  IS T +G
Sbjct: 435  KVTKVEPGLG-VYAQFNDKHYGFVHISRLSD-----------------DKVDSISST-QG 475

Query: 1326 TFHVELSLRSSLDGMSS-TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV-----T 1379
             + V+ +  + + G S+  N   LS +     +   ++ED++   +V+G ++ +      
Sbjct: 476  PYMVDSTHEARIVGFSALDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDG 535

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
              G  + L+  +   V   ++SD  ++ PEK+F  G  V+ R+LSV  L KR        
Sbjct: 536  ISGLIVSLADGISGLVPGMHMSDTKLQHPEKKFREGVQVSARILSVN-LEKRQLRLTLKK 594

Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
                +  S   + S++  G+   G I  ++S+G  +      + G   VSE+SE ++ + 
Sbjct: 595  TLLNSESSTWCDYSDILPGNKSPGTIISIQSHGAIVQFYG-EVRGFLPVSEMSEAYIKDP 653

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEV--GSY 1557
               +  G+ V V  L VD E R++ +  K           Q+SS E    A+E +  G+ 
Sbjct: 654  AQHFNIGQVVNVHALNVDAELRKLVVSCKD----------QLSSTEAYKRALEHIHPGNT 703

Query: 1558 NRSSLLENSSVAVQDMDMESEDGG 1581
               ++ E S+   +D+ ++ ED G
Sbjct: 704  VSGTVFEKSN---EDILLKLEDSG 724



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 125/278 (44%), Gaps = 26/278 (9%)

Query: 1260 GDIVGGRISKIL---SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            G +V G+I K+L    G+ GL+V +   + G V    + +  +  P   + EG  V  ++
Sbjct: 519  GAVVKGKIEKLLIGPDGISGLIVSLADGISGLVPGMHMSDTKLQHPEKKFREGVQVSARI 578

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L ++   R           + +  +  + SD+      PG       + SP  I+     
Sbjct: 579  LSVNLEKRQLRLTLKKTLLNSESSTWCDYSDI-----LPG-------NKSPGTII----- 621

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            ++ S G  +    ++   + +S +S+ Y++ P + F IG++V    L+V+   +++ V+ 
Sbjct: 622  SIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNVDAELRKLVVSC 681

Query: 1437 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC---HVSELSE 1493
            K  D  +++++    L ++H G+ V G +    +  + + +E++ LV      HVS+   
Sbjct: 682  K--DQLSSTEAYKRALEHIHPGNTVSGTVFEKSNEDILLKLEDSGLVARLNAEHVSDGQA 739

Query: 1494 DHVDNIETIYRAGEKV-KVKILKVDKEKRRISLGMKSS 1530
                      R G+K+ ++ IL + K  + I +  K S
Sbjct: 740  SRNGAALARIRVGQKLNELLILNIQKSHQLIKVTNKPS 777



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 125/270 (46%), Gaps = 22/270 (8%)

Query: 593 ITKIEKH-GCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASR 648
           +TK+E   G + +F +   GF   S L  D     SS    Y V    + RI+     S 
Sbjct: 436 VTKVEPGLGVYAQFNDKHYGFVHISRLSDDKVDSISSTQGPYMVDSTHEARIVG---FSA 492

Query: 649 RINLSFMMKPTRVSEDDLVKL-----GSLVSGVVD--VVTPNAV--VVYVIAKGYSKGTI 699
             NL  +    +V +   ++L     G++V G ++  ++ P+ +  ++  +A G S G +
Sbjct: 493 LDNLYLLSLERKVIDQPFLRLEDVTVGAVVKGKIEKLLIGPDGISGLIVSLADGIS-GLV 551

Query: 700 PTEHLAD-HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
           P  H++D  L+H    +   + G +   ++L ++ E   L L+ K +L+NS      D S
Sbjct: 552 PGMHMSDTKLQHP---EKKFREGVQVSARILSVNLEKRQLRLTLKKTLLNSESSTWCDYS 608

Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
            I P +   G + +I   G  V+F G + GF P S+  +    D ++ + +GQ V  + L
Sbjct: 609 DILPGNKSPGTIISIQSHGAIVQFYGEVRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHAL 668

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHF 847
           +V++E  ++ +S K    S+       EH 
Sbjct: 669 NVDAELRKLVVSCKDQLSSTEAYKRALEHI 698



 Score = 44.7 bits (104), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 120/280 (42%), Gaps = 33/280 (11%)

Query: 1057 KKSSYDVGSLVQA-----EITEIKP-LELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 1110
            +KSS +V   + A     ++T+++P L +  +F    +G +HI+ ++DDK + + +    
Sbjct: 417  RKSSCEVVPAISAIVPEVKVTKVEPGLGVYAQFNDKHYGFVHISRLSDDKVDSISSTQGP 476

Query: 1111 FKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGY 1170
            + +  T  ARI+  S   +     L+ LS++  ++       +      DV++G  V G 
Sbjct: 477  YMVDSTHEARIVGFSALDN-----LYLLSLERKVI------DQPFLRLEDVTVGAVVKGK 525

Query: 1171 VYKV---DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEK 1227
            + K+    +  + L +S        +       ++LQ  +++F  G  V+  +LS+N EK
Sbjct: 526  IEKLLIGPDGISGLIVSLADGISGLVPGMHMSDTKLQHPEKKFREGVQVSARILSVNLEK 585

Query: 1228 KLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS--KILS-GVGGLVVQIGPH 1284
            +                   + N    T+    DI+ G  S   I+S    G +VQ    
Sbjct: 586  R----------QLRLTLKKTLLNSESSTWCDYSDILPGNKSPGTIISIQSHGAIVQFYGE 635

Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
            + G +  +E+    + DP   ++ GQ V    L +   +R
Sbjct: 636  VRGFLPVSEMSEAYIKDPAQHFNIGQVVNVHALNVDAELR 675


>gi|167388381|ref|XP_001738546.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165898191|gb|EDR25125.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 199

 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 114/191 (59%), Gaps = 5/191 (2%)

Query: 1723 LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1782
            LE  +G+  E+++ KV+   L+ CD KK+ L ++  +   E+ +  ++++  + KK K S
Sbjct: 3    LEANHGD--EKSLKKVYNEVLEVCDRKKIMLHMI--HIYKEKKEEEEKIIRIIFKKVKGS 58

Query: 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1841
            CKV+ +    L++  ++E  +  + +A  +L + K I      A LE+K G  D+GRSMF
Sbjct: 59   CKVYKKYCNFLMRNNREEENKNTISKAKTTLDKKKMISLEIHIARLEYKYGSVDKGRSMF 118

Query: 1842 EGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901
            E IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    KYLE+E  
Sbjct: 119  EDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLSTKTMKTFLTKYLEFEIK 178

Query: 1902 VGEEERIEYVK 1912
             G+E + E+V+
Sbjct: 179  YGDESKQEHVR 189


>gi|402589157|gb|EJW83089.1| hypothetical protein WUBG_05999 [Wuchereria bancrofti]
          Length = 598

 Score =  114 bits (285), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 148/588 (25%), Positives = 267/588 (45%), Gaps = 53/588 (9%)

Query: 91  KKKKKTERKANETVD-DLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDL 149
           KK++K     +ET D    S+  +  S  +  +  +IT   ++ GM   GVV ++ E ++
Sbjct: 14  KKRRKIHSVNDETTDVKQVSIKNEQKSEYVGVWNQRITPNFLAEGMLGLGVVMKIREAEI 73

Query: 150 VICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDD--DKKEI 207
           ++    G+       +  + +L  E   N    L  +F VGQ+++  V++  +  D ++ 
Sbjct: 74  LLECSDGVIVKVPVQNFGNLML--ETLRNSSVTLEDVFRVGQMLAFKVIKGRETHDTQKK 131

Query: 208 GKRKIWLSLRLSLLYKGLSLE--TVQEGMVLTAYVKSIEDHGYILHFGLPS--FTGFLPR 263
           GK+  +  +    L     L    + +G+VL   V S+ED G I++ GL S    GFL  
Sbjct: 132 GKKSPYPIVSCDPLIVNFHLNPGALIDGLVLNGVVGSVEDKGVIINLGLQSVELKGFLAE 191

Query: 264 NNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD--TVSKCVTKDLKGISID 317
            +L     + S +  +P LL      S ++  +V+ LS+ P+   +   V K LK   ++
Sbjct: 192 RHLPSTFPKESLVKGQPLLLRIQNESSSNKKTRVINLSAVPEMECLDDAVVKKLK---LN 248

Query: 318 LLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND-YNQHKKVNAR 376
            L+PG ++         +GV ++      G V   HL        ++ND Y   K     
Sbjct: 249 DLMPGTLLLVNPLQPTHSGVYVNIGNDIKGYVSRQHLP-----PRYRNDPYKCLKSFKTI 303

Query: 377 ILFVDPTSRAVGLTLNPYLLH-----NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPS 431
           ++F    S  + L  +P ++       R    ++ +GDI  + +V  +D+   +  D+  
Sbjct: 304 VMFCQQNSNLLTLNGHPDIIAVSKFVKRTNFENIHIGDII-ECRVTSMDKSGNVNFDLVH 362

Query: 432 TPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG-LATGILKASAFEGLV 490
                     ++  A +   K   +Y++G+  + R+L F+ +E  L    LK    + +V
Sbjct: 363 EDERNSL---VAAFARKTKLKDSVEYEKGTVHKARVLSFKMVERILMVTTLKDILAQKMV 419

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
            +  D  PG+ V  K+ ++   G  V+    +    P  H+S+  + +  K F VG EL 
Sbjct: 420 -SIKDAVPGVKVTAKIESLLDKGLFVKIYNSIPGFIPKIHLSDKLVTRIDKHFAVGDELN 478

Query: 551 FRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH---GCFVRF 605
            R+L V    +R+ +T+K++L+ SK  I+ +YAE T  +IT G+I  I +H   G  + F
Sbjct: 479 CRILNVNKLKERLILTNKQSLISSKDTIIKNYAEVTTNIITTGYI--ISQHSSGGLVIGF 536

Query: 606 YNGVQGFAPRSE---LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           Y G++GF    E   LG +          VG  V+ R++S  P   R+
Sbjct: 537 YGGIRGFMLPKEAERLGTN--------VKVGLTVRVRVISVDPQRERL 576



 Score = 42.0 bits (97), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%)

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
           P   V   + ++++ G FV+    + GF P+    D     + K + VG  +   IL+VN
Sbjct: 426 PGVKVTAKIESLLDKGLFVKIYNSIPGFIPKIHLSDKLVTRIDKHFAVGDELNCRILNVN 485

Query: 821 SETGRITLSLKQSCCSSTDA 840
               R+ L+ KQS  SS D 
Sbjct: 486 KLKERLILTNKQSLISSKDT 505



 Score = 40.8 bits (94), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 1348 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1407
            ++T  D   + +  I+D  P + V   ++++  KG F+ +   +   +   +LSD  V  
Sbjct: 407  VTTLKDILAQKMVSIKDAVPGVKVTAKIESLLDKGLFVKIYNSIPGFIPKIHLSDKLVTR 466

Query: 1408 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1467
             +K F +G  +  R+L+V  L +R+ +T K S   ++  + I N + +    I  G I  
Sbjct: 467  IDKHFAVGDELNCRILNVNKLKERLILTNKQS-LISSKDTIIKNYAEVTTNIITTGYIIS 525

Query: 1468 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
              S G  +      + G     E      + + T  + G  V+V+++ VD ++ R+
Sbjct: 526  QHSSGGLVIGFYGGIRGFMLPKE-----AERLGTNVKVGLTVRVRVISVDPQRERL 576


>gi|70924365|ref|XP_735043.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56508345|emb|CAH80488.1| hypothetical protein PC000068.04.0 [Plasmodium chabaudi chabaudi]
          Length = 199

 Score =  111 bits (278), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 107/185 (57%), Gaps = 6/185 (3%)

Query: 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK 1713
            + D    P+++E+L+ S  N S +WI Y+A+ L   ++++AR+IAERAL+TI+I    EK
Sbjct: 19   QNDEKVKPNDYEKLLVSEKNKSTIWISYIAYYLEKGNIQEARNIAERALKTIDIHLIEEK 78

Query: 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLY 1773
            LNI++ Y N+E  YG+   +    +F+RAL   + K ++L  + + +  ++     EL  
Sbjct: 79   LNIYLCYINMECAYGDNLND----IFKRALLVNNEKSIYLHTMNILKMNKKYNELKELCE 134

Query: 1774 KMIKKFKHSCKVWLRRVQRLLK--QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831
            + IKKFK+S K+W R ++ L      +E    ++  +L +LP+ KH+  I   A  E+K 
Sbjct: 135  EAIKKFKYSKKIWTRYLELLHNTLNDEEYAHNILLXSLHALPKRKHLNIIINAARFEYKY 194

Query: 1832 GVADR 1836
               +R
Sbjct: 195  SNIER 199


>gi|403160369|ref|XP_003320886.2| hypothetical protein PGTG_02908 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|375169528|gb|EFP76467.2| hypothetical protein PGTG_02908 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1187

 Score =  111 bits (278), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 152/642 (23%), Positives = 266/642 (41%), Gaps = 95/642 (14%)

Query: 211 KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP--------------- 255
           K+ L++    +  G+    +Q  M LT  VKSIED GYI+  G+                
Sbjct: 199 KVTLTIDPVHINSGIDKSDLQGRMTLTGAVKSIEDRGYIIDLGISVDSNVDSATSQASAN 258

Query: 256 SFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 307
           + T F+   +  + +G++ +         G +L   +  +        +S +   +S+ V
Sbjct: 259 NLTAFISFADATKATGVNHQDEPSLQWEVGQVLWCRINKLSENGATCMVSVNAQDISRSV 318

Query: 308 TKDLKGISIDLLVPGMMVSTRVQSILE-NGVMLSFLTYFTGTVDIFHLQNTFPT-TNWKN 365
                  +ID ++P  MVS  + S++   G+ ++ L +F  T+ + HL+    T  +   
Sbjct: 319 LT--AATNIDSILPLHMVSCLITSVIPGQGLNVTLLGFFKATIQVPHLECHSTTGVDLSE 376

Query: 366 DYNQHKKVNARILF-VDPTSRAVGLTLNPYLLHNR--------------AP--PSHVK-- 406
            +   +K+ AR+L+   P+   V L  N  LL  +               P  P+H++  
Sbjct: 377 KFKVGQKLRARVLWDTIPSKNHVSLEGNESLLGPKIFSLSIFDHVVKLDTPGLPTHLQNG 436

Query: 407 ---------------VGDIYDQSKVVRVDRGL-----------GLLLDIPSTPVSTPAYV 440
                          +G  +   ++ RVD              GL ++I   PV+     
Sbjct: 437 ERTRCDKIDQLLLYPIGYTFQTVRIFRVDEEWGVYATCVNGEDGLPIEI-DPPVAFAHIA 495

Query: 441 TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGM 500
            ISD     + K    YK G+  + R+ G   ++G+    L+ S  E       D+  G 
Sbjct: 496 AISDSFLSCLSKDSGPYKVGTTHKARVTGVSPVDGVLQLTLQPSVVEQAYMRSEDIPIGA 555

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
           ++ G +  + +   IV+  GG  A+    H S+ +   P KKF  GA++  RVL     R
Sbjct: 556 LMNGTIKKLTATNLIVRIEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARVLYTNPDR 615

Query: 561 --ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR--S 616
             I +T +KTLV++   I++SY  A+        ITK+E+    + F+   +G  PR  +
Sbjct: 616 DQIVLTLRKTLVRAD-EIITSYESASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEA 674

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---VKLGSLV 673
           E G     +P  ++  G++VK +I++     RRI L+ + + T      L   + +G  V
Sbjct: 675 EAGYVESMKP--IFTPGRLVKVKIINVDVEKRRI-LASVKRSTSGEASKLSTVIDVGDQV 731

Query: 674 SGVVDVVTPNAVVVYVIAKGYS--------KGTIPTEHLADHLE-HATVMKSVIKPGYEF 724
           S  V V+  NA +   +    +        KG I  E LA   +     +K+ +K G E 
Sbjct: 732 SAFVTVIR-NAFIQLDLRHTNADPSSSEPVKGLISVEILAKKYDISPEALKNQLKAGDEV 790

Query: 725 DQLLVLDNESSNLLLSAKYSLINSAQ-QLPSDASHIHPNSVV 765
             L+V   +    LL   Y   +  Q Q+      IH  ++V
Sbjct: 791 KDLIVHTKDKEKELLMVGYKSASIPQEQMTGPIRFIHDKNLV 832



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 116/272 (42%), Gaps = 33/272 (12%)

Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTELKNI------CVSDPLSGYDEGQFVKCKVLE 1318
            G  +  ++G  GL ++I P     V F  +  I      C+S     Y  G   K +V  
Sbjct: 469  GVYATCVNGEDGLPIEIDP----PVAFAHIAAISDSFLSCLSKDSGPYKVGTTHKARVTG 524

Query: 1319 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1378
            +S  V G    +L+L+ S+   +   S                 ED+    ++ G +K +
Sbjct: 525  VS-PVDGVL--QLTLQPSVVEQAYMRS-----------------EDIPIGALMNGTIKKL 564

Query: 1379 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
            T+    + +    DA V   + SD     PEK+F  G  V  RVL   P   ++ +TL+ 
Sbjct: 565  TATNLIVRIEGGHDAVVWPDHYSDVKHAHPEKKFAPGAKVKARVLYTNPDRDQIVLTLRK 624

Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
            +  R  +   I +  +  VG      I +VE   + I     +  GL   +E    +V++
Sbjct: 625  TLVR--ADEIITSYESASVGTCAWAMITKVEEKFMLIEFFG-HTKGLVPRAEAEAGYVES 681

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            ++ I+  G  VKVKI+ VD EKRRI   +K S
Sbjct: 682  MKPIFTPGRLVKVKIINVDVEKRRILASVKRS 713



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 99/215 (46%), Gaps = 16/215 (7%)

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV------SEDDLVKLGSLVSGVVDVV 680
           S  Y VG   K R+    P    + L+  ++P+ V      SED  + +G+L++G +  +
Sbjct: 509 SGPYKVGTTHKARVTGVSPVDGVLQLT--LQPSVVEQAYMRSED--IPIGALMNGTIKKL 564

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 739
           T   ++V +  +G     +  +H +D ++HA   K    PG +   ++L  + +   ++L
Sbjct: 565 TATNLIVRI--EGGHDAVVWPDHYSD-VKHAHPEKK-FAPGAKVKARVLYTNPDRDQIVL 620

Query: 740 SAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
           + + +L+  A ++ +        +     +  + E    + F G   G  PR++A  G  
Sbjct: 621 TLRKTLVR-ADEIITSYESASVGTCAWAMITKVEEKFMLIEFFGHTKGLVPRAEAEAGYV 679

Query: 800 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             +   +  G+ V+  I++V+ E  RI  S+K+S 
Sbjct: 680 ESMKPIFTPGRLVKVKIINVDVEKRRILASVKRST 714


>gi|171910224|ref|ZP_02925694.1| 30S ribosomal protein S1 [Verrucomicrobium spinosum DSM 4136]
          Length = 557

 Score =  107 bits (268), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 220/460 (47%), Gaps = 89/460 (19%)

Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
            I +VND++ N+V            ++ R + ++ + + ++ FL   S+KP          
Sbjct: 149  IVKVNDERKNIV------------LSRREVIEAERAEQRQKFL--ESVKP---------- 184

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQR 1208
                       G +V G V  +  ++ +      +   L I D  +     PSEL     
Sbjct: 185  -----------GDKVEGIVKNI-TDFGVFVDLNGMDGLLHITDMTWGRLNHPSEL----- 227

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGR 1266
               IG+ +   +L +N+EK+ + L L+  Q          SN  ++++     G  V G 
Sbjct: 228  -VAIGQKLNVQILEVNREKERVSLGLKQMQ----------SNPWESIENRYPVGQRVHGT 276

Query: 1267 ISKILSGVGGLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRG 1325
            ++K+++   G  V++   + G +H +EL     ++ P      GQ V  +VL I++  R 
Sbjct: 277  VTKLVAY--GAFVEVEEGVEGLIHVSELSWTKRIARPSDVLTVGQKVDAQVLGINKEER- 333

Query: 1326 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1385
               + L +R  LD    TN  D   ++D         E       ++G V+N+T+ G F+
Sbjct: 334  --KISLGVRQ-LD----TNPWD---NID---------ERFPIGTKMKGKVRNLTAYGAFV 374

Query: 1386 MLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1444
             L   +D  + +S+LS    +  P +    G+ V   +L ++  ++R+ + +K  +    
Sbjct: 375  ELEEGIDGMIHVSDLSWTRKINHPSEVLKKGQEVEATILEIDKANQRISLGIKQLEGDPW 434

Query: 1445 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
            S+ +    +   VGD+V G++ ++ S+G F+ +E+ ++ GL H+S+LSEDHV+ ++ +  
Sbjct: 435  SEID----TRFKVGDLVKGRVAKIASFGAFVELED-DIDGLVHISQLSEDHVNRVKDVLN 489

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1544
             G++V+ +++KVDK +RRI L +K+  +  D ++L+  S+
Sbjct: 490  VGDEVEARVIKVDKVERRIGLSVKAVNY--DEESLKKESQ 527



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 172/414 (41%), Gaps = 72/414 (17%)

Query: 722  YEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            YEF +++ +++E  N++LS +  +    A+Q       + P   V G V NI + G FV 
Sbjct: 145  YEF-KIVKVNDERKNIVLSRREVIEAERAEQRQKFLESVKPGDKVEGIVKNITDFGVFVD 203

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
              G + G    +    G+    S+   +GQ +   IL+VN E  R++L LKQ        
Sbjct: 204  LNG-MDGLLHITDMTWGRLNHPSELVAIGQKLNVQILEVNREKERVSLGLKQ-------- 254

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
                           +QS+     E +    + +G  + G V +   +G  V  EE   V
Sbjct: 255  ---------------MQSNPWESIENR----YPVGQRVHGTVTKLVAYGAFVEVEE--GV 293

Query: 901  YGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
             G I   +L+           +  G  + A +L + K ER + L +        R+ ++N
Sbjct: 294  EGLIHVSELSWTKRIARPSDVLTVGQKVDAQVLGINKEERKISLGV--------RQLDTN 345

Query: 953  RQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYN-TQKF 1010
                  +R    +K  G  + + A    V          E    I G   VSD + T+K 
Sbjct: 346  PWDNIDERFPIGTKMKGKVRNLTAYGAFV----------ELEEGIDGMIHVSDLSWTRKI 395

Query: 1011 --PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 1068
              P +    GQ V AT++ +  ++   R+ L +K +          ++  + + VG LV+
Sbjct: 396  NHPSEVLKKGQEVEATILEIDKANQ--RISLGIKQL-----EGDPWSEIDTRFKVGDLVK 448

Query: 1069 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
              + +I      ++      G +HI+++++D  N V+++ +   +G  V AR+I
Sbjct: 449  GRVAKIASFGAFVELEDDIDGLVHISQLSEDHVNRVKDVLN---VGDEVEARVI 499



 Score = 45.8 bits (107), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 156/367 (42%), Gaps = 45/367 (12%)

Query: 321 PGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN-TFPTTNWKNDYNQ-HKKVNARIL 378
           PG  V   V++I + GV +       G   + H+ + T+   N  ++     +K+N +IL
Sbjct: 184 PGDKVEGIVKNITDFGVFVDL----NGMDGLLHITDMTWGRLNHPSELVAIGQKLNVQIL 239

Query: 379 FVDPTSRAVGLTL-----NPY-LLHNRAPPS---HVKVGDIYDQSKVVRVDRGLGLLLDI 429
            V+     V L L     NP+  + NR P     H  V  +      V V+ G+  L+ +
Sbjct: 240 EVNREKERVSLGLKQMQSNPWESIENRYPVGQRVHGTVTKLVAYGAFVEVEEGVEGLIHV 299

Query: 430 P----STPVSTPAYV-TISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKAS 484
                +  ++ P+ V T+    + +V  + K+ ++ S      LG R L+         +
Sbjct: 300 SELSWTKRIARPSDVLTVGQKVDAQVLGINKEERKIS------LGVRQLD--------TN 345

Query: 485 AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKF 543
            ++ +         G  +KGKV  + ++GA V+   G+  +  +  +S   +I  P +  
Sbjct: 346 PWDNI---DERFPIGTKMKGKVRNLTAYGAFVELEEGIDGMIHVSDLSWTRKINHPSEVL 402

Query: 544 KVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
           K G E+   +L +   ++RI++  K+ L     + + +  +  D  +  G + KI   G 
Sbjct: 403 KKGQEVEATILEIDKANQRISLGIKQ-LEGDPWSEIDTRFKVGD--LVKGRVAKIASFGA 459

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
           FV   + + G    S+L  D       + +VG  V+ R++      RRI LS  +K    
Sbjct: 460 FVELEDDIDGLVHISQLSEDHVNRVKDVLNVGDEVEARVIKVDKVERRIGLS--VKAVNY 517

Query: 662 SEDDLVK 668
            E+ L K
Sbjct: 518 DEESLKK 524


>gi|284044326|ref|YP_003394666.1| RNA binding S1 domain-containing protein [Conexibacter woesei DSM
            14684]
 gi|283948547|gb|ADB51291.1| RNA binding S1 domain protein [Conexibacter woesei DSM 14684]
          Length = 529

 Score =  107 bits (266), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 186/373 (49%), Gaps = 42/373 (11%)

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
            FEE DV     VTG+V ++D +  L+ I    K++  I  +     +  + +    +G+ 
Sbjct: 38   FEEGDV-----VTGHVVRIDKDEVLVDIG--YKSEGVIPSNELSIRKSVDPKDEVEMGEE 90

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            V   VL+  KE +  RL+L   +        + +   ++     G+ V G + +++ G  
Sbjct: 91   VDALVLT--KEDQDGRLILSKKR-----ARFEKAWRRIEAAAESGEPVDGTVIEVVKG-- 141

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            GL++ +G   +      +++ +   D   G    Q ++C+V+E++R+     +V LS R+
Sbjct: 142  GLIIDLGVRGFLPASLVDIRRVPHLDEYLG----QTIECRVIELNRS---RNNVVLSRRA 194

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
             L+     +   +             ++ L P MIV+G + N+   G F+ L   +D  +
Sbjct: 195  VLEEQRREDRERI-------------LDRLQPGMIVEGTISNIVDFGAFVDLD-GIDGLI 240

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1455
             +S LS  +V  P +   IG  V+ +VL ++   +R+ + LK    +T        +   
Sbjct: 241  HISELSWSHVNHPSEILSIGDTVSVKVLDIDRDRQRISLGLK----QTQEDPWQRVVDTY 296

Query: 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515
            +VGD + G++ +V ++G F+ I +  + GL H+SEL++ HV+N   I +  ++VKVKIL+
Sbjct: 297  NVGDELEGRVTKVVTFGAFVEILD-GVEGLVHISELAQHHVENPREIIQPNDEVKVKILE 355

Query: 1516 VDKEKRRISLGMK 1528
            +D E+RR+SL +K
Sbjct: 356  IDSERRRLSLSIK 368



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PGM+V+G +  +  FGA V    G+  L  +  +S   +  P +   +G  +  +VL 
Sbjct: 211 LQPGMIVEGTISNIVDFGAFVDL-DGIDGLIHISELSWSHVNHPSEILSIGDTVSVKVLD 269

Query: 556 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           +    +RI++  K+T       ++ +Y    D L   G +TK+   G FV   +GV+G  
Sbjct: 270 IDRDRQRISLGLKQTQEDPWQRVVDTY-NVGDEL--EGRVTKVVTFGAFVEILDGVEGLV 326

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL       P  +      VK +I+      RR++LS 
Sbjct: 327 HISELAQHHVENPREIIQPNDEVKVKILEIDSERRRLSLSI 367



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 151/392 (38%), Gaps = 67/392 (17%)

Query: 569 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
           +V +  A L+ + E     +  G + +I+K    V      +G  P +EL +    +P  
Sbjct: 27  IVPNYDATLTPFEEGD---VVTGHVVRIDKDEVLVDIGYKSEGVIPSNELSIRKSVDPKD 83

Query: 629 MYHVGQVVKCRIMSSIPASRRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPN 683
              +G+ V   +++      R+ LS     F     R+      + G  V G V  V   
Sbjct: 84  EVEMGEEVDALVLTKEDQDGRLILSKKRARFEKAWRRIEA--AAESGEPVDGTVIEVVKG 141

Query: 684 AVVVYVIAKGYSKGTIPTEHLADHLEH---ATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
            +++ +  +G+   ++       HL+     T+   VI+          L+   +N++LS
Sbjct: 142 GLIIDLGVRGFLPASLVDIRRVPHLDEYLGQTIECRVIE----------LNRSRNNVVLS 191

Query: 741 AKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
            +  L    ++        + P  +V G + NI++ G FV   G + G    S+      
Sbjct: 192 RRAVLEEQRREDRERILDRLQPGMIVEGTISNIVDFGAFVDLDG-IDGLIHISELSWSHV 250

Query: 800 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSS 859
              S+   +G +V   +LD++ +  RI+L LKQ+                          
Sbjct: 251 NHPSEILSIGDTVSVKVLDIDRDRQRISLGLKQT-------------------------- 284

Query: 860 KHNGSELKW---VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
                E  W   V+ + +G  +EG+V +   FG  V   +   V G +   +LA   VE+
Sbjct: 285 ----QEDPWQRVVDTYNVGDELEGRVTKVVTFGAFVEILDG--VEGLVHISELAQHHVEN 338

Query: 917 -------GSVIQAAILDVAKAERLVDLSLKTV 941
                     ++  IL++    R + LS+K V
Sbjct: 339 PREIIQPNDEVKVKILEIDSERRRLSLSIKRV 370


>gi|195573447|ref|XP_002104705.1| GD18301 [Drosophila simulans]
 gi|194200632|gb|EDX14208.1| GD18301 [Drosophila simulans]
          Length = 192

 Score =  106 bits (265), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 106/181 (58%), Gaps = 1/181 (0%)

Query: 1742 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1800
            AL   DP +++++++ + ++ ++      +L  ++ KFK   +VW    +      + + 
Sbjct: 6    ALNCNDPLEIYISVVDILKKNKRKDRLSSVLTTVLNKFKTELRVWPVAAEAYFWLGKSDQ 65

Query: 1801 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860
            V  ++QRAL +LP  +HI  I   A L  K+   D  +++ + +++ YPKR D+WS+Y+D
Sbjct: 66   VHNLLQRALRALPNQEHIPCIVSFAKLYAKHDNNDMAQTLLDDVVTSYPKRIDIWSVYVD 125

Query: 1861 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
              I+ G +D  R + ERA+   L P KM+ ++KKYL+ E++ G +  +  VKQ+A ++V+
Sbjct: 126  MLIKAGLIDSARNVLERAVLQKLKPNKMQVIYKKYLQLEENHGTDATVAKVKQQAEQWVK 185

Query: 1921 S 1921
            +
Sbjct: 186  N 186


>gi|223937065|ref|ZP_03628973.1| ribosomal protein S1 [bacterium Ellin514]
 gi|223894346|gb|EEF60799.1| ribosomal protein S1 [bacterium Ellin514]
          Length = 553

 Score =  106 bits (265), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 162/329 (49%), Gaps = 45/329 (13%)

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
              +G+ +   VL INKEK+ + L       G+  K  +   DN++     G  V G++  
Sbjct: 228  LKVGQDIDVVVLDINKEKERVSL-------GLKQKLAN-PWDNIEAKYPIGAKVKGKVVN 279

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
            ++    G  V++ P + G VH TEL     ++ P       Q ++  VL I+R  +    
Sbjct: 280  LVPY--GAFVELEPGVEGLVHVTELSWTKRIAKPADVLKADQEIEAVVLGINREEQ---K 334

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
            + L +R        TN  D + D   PG              V+G ++N+TS G FI L 
Sbjct: 335  ISLGVRQL-----ETNPWDKAMDKYPPGTR------------VKGKIRNLTSYGAFIELE 377

Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              LD  + +S++S    +  P +    G  V   VL ++  ++R+ V +K        Q 
Sbjct: 378  EGLDGMIHVSDISWTRKINHPSEVLKKGDEVEAVVLEIDKANQRIAVGVK--------QL 429

Query: 1448 EINNLSNL----HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIY 1503
             ++  SN+     VGD+V GQ+ ++ S+G F+ +++  + GL H+S++SE+ VD I+ + 
Sbjct: 430  AVDPWSNIDQFYKVGDLVTGQVTKLASFGAFVGLQH-EIDGLVHISQVSEERVDKIKNVL 488

Query: 1504 RAGEKVKVKILKVDKEKRRISLGMKSSYF 1532
            + G++V  +++K+DK  RRI L +K++ +
Sbjct: 489  KVGQEVTARVIKIDKSDRRIGLSIKAASY 517



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 138/282 (48%), Gaps = 35/282 (12%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYD 1307
            D + T  +EG  + G++  ++ G  GL+V IG   +    ++  T  KN      L+ Y 
Sbjct: 90   DKILTICNEGGTITGKVKAVVKG--GLLVNIGVEAFLPASQIDITTTKN------LASY- 140

Query: 1308 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1367
             G   + KV++I++  +   ++ LS R  ++   +   S L             + +++P
Sbjct: 141  VGNSYEFKVVKINQERQ---NIVLSRRELIEQERNDRRSKL-------------LSEMTP 184

Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1427
              I +G VKN+T  G FI L+  +D  + ++++S G +  P     +G+ +   VL +  
Sbjct: 185  GDIRKGTVKNITDFGAFIDLN-GIDGLLHITDMSWGRIAHPSDILKVGQDIDVVVLDINK 243

Query: 1428 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
              +RV + LK   +      E    +   +G  V G++  +  YG F+ +E   + GL H
Sbjct: 244  EKERVSLGLKQKLANPWDNIE----AKYPIGAKVKGKVVNLVPYGAFVELE-PGVEGLVH 298

Query: 1488 VSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            V+ELS    +     + +A ++++  +L +++E+++ISLG++
Sbjct: 299  VTELSWTKRIAKPADVLKADQEIEAVVLGINREEQKISLGVR 340



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 105/478 (21%), Positives = 201/478 (42%), Gaps = 85/478 (17%)

Query: 670  GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV 729
            G  ++G V  V    ++V +  + +    +P   +   +     + S +   YEF +++ 
Sbjct: 99   GGTITGKVKAVVKGGLLVNIGVEAF----LPASQI--DITTTKNLASYVGNSYEF-KVVK 151

Query: 730  LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            ++ E  N++LS +  +        S   S + P  +  G V NI + G F+   G + G 
Sbjct: 152  INQERQNIVLSRRELIEQERNDRRSKLLSEMTPGDIRKGTVKNITDFGAFIDLNG-IDGL 210

Query: 789  APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFL 848
               +    G+ A  S    VGQ +   +LD+N E  R++L LKQ   +  D         
Sbjct: 211  LHITDMSWGRIAHPSDILKVGQDIDVVVLDINKEKERVSLGLKQKLANPWDN-------- 262

Query: 849  LEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ 908
            +E K                   + IG+ ++GKV     +G  V  E    V G +   +
Sbjct: 263  IEAK-------------------YPIGAKVKGKVVNLVPYGAFVELE--PGVEGLVHVTE 301

Query: 909  LA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK-- 958
            L+           +++   I+A +L + + E+ + L ++ +      E N   +A  K  
Sbjct: 302  LSWTKRIAKPADVLKADQEIEAVVLGINREEQKISLGVRQL------ETNPWDKAMDKYP 355

Query: 959  --KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKF--PQK 1013
               R +   ++L    +  A +E+  E  L           G   VSD + T+K   P +
Sbjct: 356  PGTRVKGKIRNL---TSYGAFIEL--EEGL----------DGMIHVSDISWTRKINHPSE 400

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
                G  V A V+ +  ++   R+ + +K ++    S+  +      Y VG LV  ++T+
Sbjct: 401  VLKKGDEVEAVVLEIDKANQ--RIAVGVKQLAVDPWSNIDQF-----YKVGDLVTGQVTK 453

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
            +      +       G +HI++V++++ + ++N+    K+GQ VTAR+I K +K D +
Sbjct: 454  LASFGAFVGLQHEIDGLVHISQVSEERVDKIKNV---LKVGQEVTARVI-KIDKSDRR 507



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 151/378 (39%), Gaps = 35/378 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S++ PG + KG V  +  FGA +    G+  L  +  MS   I  P    KVG ++   V
Sbjct: 180 SEMTPGDIRKGTVKNITDFGAFIDL-NGIDGLLHITDMSWGRIAHPSDILKVGQDIDVVV 238

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L +  + +R+++  K+ L      I + Y          G +  +  +G FV    GV+G
Sbjct: 239 LDINKEKERVSLGLKQKLANPWDNIEAKYPIGAK---VKGKVVNLVPYGAFVELEPGVEG 295

Query: 612 FAPRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL- 669
               +EL       +P+ +    Q ++  ++      ++I+L      T   +  + K  
Sbjct: 296 LVHVTELSWTKRIAKPADVLKADQEIEAVVLGINREEQKISLGVRQLETNPWDKAMDKYP 355

Query: 670 -GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYE 723
            G+ V G +  +T     + +      +G     H++D      + H +    V+K G E
Sbjct: 356 PGTRVKGKIRNLTSYGAFIEL-----EEGLDGMIHVSDISWTRKINHPS---EVLKKGDE 407

Query: 724 FDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
            + +++ +D  +  + +  K   ++    +           +V G V  +   G FV   
Sbjct: 408 VEAVVLEIDKANQRIAVGVKQLAVDPWSNIDQ---FYKVGDLVTGQVTKLASFGAFVGLQ 464

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 842
             + G    S+  + +   +     VGQ V + ++ ++    RI LS+K        AS+
Sbjct: 465 HEIDGLVHISQVSEERVDKIKNVLKVGQEVTARVIKIDKSDRRIGLSIKA-------ASY 517

Query: 843 MQEHFLLEEKIAMLQSSK 860
             E    E+  AML S K
Sbjct: 518 SPEQLKAEQ--AMLDSLK 533



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 9/113 (7%)

Query: 1428 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
            LS+R  +  + +D R+        LS +  GDI  G +K +  +G FI +   +  GL H
Sbjct: 161  LSRRELIEQERNDRRSKL------LSEMTPGDIRKGTVKNITDFGAFIDLNGID--GLLH 212

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            ++++S   + +   I + G+ + V +L ++KEK R+SLG+K     N  DN++
Sbjct: 213  ITDMSWGRIAHPSDILKVGQDIDVVVLDINKEKERVSLGLKQK-LANPWDNIE 264


>gi|167385610|ref|XP_001737415.1| programmed cell death protein [Entamoeba dispar SAW760]
 gi|165899785|gb|EDR26302.1| programmed cell death protein, putative [Entamoeba dispar SAW760]
          Length = 170

 Score =  105 bits (262), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 1/145 (0%)

Query: 1776 IKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834
             KK K SCKV+ +  + +++  ++E  +  + +A  +L + K I      A LE+K G  
Sbjct: 23   FKKVKGSCKVYKKYCKFIMRNNREEENKNTISKAKTTLDKKKMISLEIHIARLEYKYGSV 82

Query: 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894
            D+GRSMFE IL+  PKR D+W+IY+D E  +G+V +IR +FER +   L  K MK    K
Sbjct: 83   DKGRSMFEDILTNNPKRHDVWNIYIDMEKEVGEVGVIRRIFERIVKQKLNTKTMKTFLTK 142

Query: 1895 YLEYEKSVGEEERIEYVKQKAMEYV 1919
            YLE+E   G+E + E+V+  A  +V
Sbjct: 143  YLEFEIKYGDESKQEHVRDIAKSFV 167


>gi|302796338|ref|XP_002979931.1| hypothetical protein SELMODRAFT_419585 [Selaginella moellendorffii]
 gi|300152158|gb|EFJ18801.1| hypothetical protein SELMODRAFT_419585 [Selaginella moellendorffii]
          Length = 309

 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 80/114 (70%), Gaps = 5/114 (4%)

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            V G+VKNVT KGCF++LS  L+A++ L NLS+ +V++P + FP GK+++GR+LS+EPLS 
Sbjct: 160  VHGFVKNVTEKGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRILSIEPLSG 219

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1484
             +E++L  + S+ +S            G+IV G+I  +E++G+FI++  +++V 
Sbjct: 220  HIEMSLTATTSQDSS-----GWKKFGAGEIVSGRIHNIEAFGIFISLPESHVVA 268



 Score = 96.3 bits (238), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 115/251 (45%), Gaps = 59/251 (23%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            V+I Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F+ RF +G     ++
Sbjct: 46   VTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFKERFKVGDPFQCYI 105

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
             S+N E+K + L L P       KT D      + F  + D++G RI+++ +GVGG  VQ
Sbjct: 106  RSVNHERKQVDLSLHP-------KTSD------EQF-KKNDLLGRRITRVFAGVGGHTVQ 151

Query: 1281 ------------------------IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
                                    + P L  R+    L N  V +P   +  G+ +  ++
Sbjct: 152  GRWESLGKVHGFVKNVTEKGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGKVISGRI 211

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L I   + G  H+E+SL       ++T S D S             +      IV G + 
Sbjct: 212  LSI-EPLSG--HIEMSL-------TATTSQDSS-----------GWKKFGAGEIVSGRIH 250

Query: 1377 NVTSKGCFIML 1387
            N+ + G FI L
Sbjct: 251  NIEAFGIFISL 261


>gi|187734759|ref|YP_001876871.1| 30S ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835]
 gi|187424811|gb|ACD04090.1| ribosomal protein S1 [Akkermansia muciniphila ATCC BAA-835]
          Length = 562

 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 214/465 (46%), Gaps = 87/465 (18%)

Query: 1093 ITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
            I +VNDD+ N+V            ++ R + ++ + D ++ FL          TV E   
Sbjct: 150  IVKVNDDRKNIV------------LSRREVIEAERADQRQRFL---------ETVKE--- 185

Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQR 1208
                       G +V G V  + +  A + + R +   L I D ++     PSE+     
Sbjct: 186  -----------GDKVEGIVKNITDFGAFVDL-RGMDGLLHITDMSWGRVNHPSEM----- 228

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS 1268
              HIG+++   +L +++EK+ + L L+   D   +   DI         H    V GR++
Sbjct: 229  -LHIGQSLEVVILEVDREKERVSLGLKQMTD---NPWADIER-KYPINSH----VKGRVT 279

Query: 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNIC-VSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            K+L    G  V++   + G VH +EL  +  ++ P       Q ++  VL IS   +   
Sbjct: 280  KLLP--YGAFVELEKGVEGLVHVSELSWVKRITRPSDVLKLDQEIEAVVLSISVKEQ--- 334

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
             + L +R  L+              D P   +E         +++G V+N+T  G F+ L
Sbjct: 335  KISLGVR-QLE--------------DNPWADIES--RFPIGTVIKGQVRNLTPYGAFVGL 377

Query: 1388 SRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1446
               +D  + +S++S    +  P +    G  V   VL ++   +RV + +K  +S     
Sbjct: 378  EEGIDGMIHVSDMSWTRKINHPSEVLKKGDEVEAIVLEIKKEDQRVSLGIKQLES--DPW 435

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
              IN+     VGD+V GQ+ ++ S+G F+ ++  ++ GL H+S+LSEDHV+ ++ + + G
Sbjct: 436  ESIND--RFKVGDMVTGQVAKIASFGAFVNLDG-DIDGLIHISQLSEDHVERVKDVIKVG 492

Query: 1507 EKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAI 1551
            +++  +++KVD  +RRI L +K+  +    D  Q+  E  S EA+
Sbjct: 493  DEITARVIKVDSIERRIGLSIKAVNY----DTEQLRRETASFEAL 533



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 150/331 (45%), Gaps = 39/331 (11%)

Query: 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1259
            P +L E+     +GK     ++ +N ++K + L  R     I  +  D     ++T + E
Sbjct: 135  PRDLNEY-----VGKVYEFKIVKVNDDRKNIVLSRREV---IEAERADQRQRFLET-VKE 185

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD V G I K ++  G  V   G  + G +H T++    V+ P      GQ ++  +LE+
Sbjct: 186  GDKVEG-IVKNITDFGAFVDLRG--MDGLLHITDMSWGRVNHPSEMLHIGQSLEVVILEV 242

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
             R       V L L+                  D P   +E+      N  V+G V  + 
Sbjct: 243  DREKE---RVSLGLKQM---------------TDNPWADIER--KYPINSHVKGRVTKLL 282

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSD-GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
              G F+ L + ++  V +S LS    +  P     + + +   VLS+    +++ + ++ 
Sbjct: 283  PYGAFVELEKGVEGLVHVSELSWVKRITRPSDVLKLDQEIEAVVLSISVKEQKISLGVRQ 342

Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH-VD 1497
             +    +  E    S   +G ++ GQ++ +  YG F+ +E   + G+ HVS++S    ++
Sbjct: 343  LEDNPWADIE----SRFPIGTVIKGQVRNLTPYGAFVGLEE-GIDGMIHVSDMSWTRKIN 397

Query: 1498 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            +   + + G++V+  +L++ KE +R+SLG+K
Sbjct: 398  HPSEVLKKGDEVEAIVLEIKKEDQRVSLGIK 428



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 140/352 (39%), Gaps = 36/352 (10%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           VK G  V+G V  +  FGA V   G +  L  +  MS   +  P +   +G  L   +L 
Sbjct: 183 VKEGDKVEGIVKNITDFGAFVDLRG-MDGLLHITDMSWGRVNHPSEMLHIGQSLEVVILE 241

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V  + +R+++  K+        I   Y   +      G +TK+  +G FV    GV+G  
Sbjct: 242 VDREKERVSLGLKQMTDNPWADIERKYPINSH---VKGRVTKLLPYGAFVELEKGVEGLV 298

Query: 614 PRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLG 670
             SEL  +     PS +  + Q ++  ++S     ++I+L           D      +G
Sbjct: 299 HVSELSWVKRITRPSDVLKLDQEIEAVVLSISVKEQKISLGVRQLEDNPWADIESRFPIG 358

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFD 725
           +++ G V  +TP    V     G  +G     H++D      + H +    V+K G E +
Sbjct: 359 TVIKGQVRNLTPYGAFV-----GLEEGIDGMIHVSDMSWTRKINHPS---EVLKKGDEVE 410

Query: 726 QLLV-LDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGCFV 779
            +++ +  E   + L  K        QL SD             +V G V  I   G FV
Sbjct: 411 AIVLEIKKEDQRVSLGIK--------QLESDPWESINDRFKVGDMVTGQVAKIASFGAFV 462

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              G + G    S+  +     +     VG  + + ++ V+S   RI LS+K
Sbjct: 463 NLDGDIDGLIHISQLSEDHVERVKDVIKVGDEITARVIKVDSIERRIGLSIK 514



 Score = 43.9 bits (102), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 165/412 (40%), Gaps = 68/412 (16%)

Query: 722  YEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            YEF +++ ++++  N++LS +  +    A Q       +     V G V NI + G FV 
Sbjct: 146  YEF-KIVKVNDDRKNIVLSRREVIEAERADQRQRFLETVKEGDKVEGIVKNITDFGAFVD 204

Query: 781  FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
              G + G    +    G+    S+  ++GQS+   IL+V+ E  R++L LKQ     TD 
Sbjct: 205  LRG-MDGLLHITDMSWGRVNHPSEMLHIGQSLEVVILEVDREKERVSLGLKQ----MTDN 259

Query: 841  SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE---- 896
             +      +E K                   + I S ++G+V +   +G  V  E+    
Sbjct: 260  PWAD----IERK-------------------YPINSHVKGRVTKLLPYGAFVELEKGVEG 296

Query: 897  --HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
              H     ++         ++    I+A +L ++  E+ + L +        R+   N  
Sbjct: 297  LVHVSELSWVKRITRPSDVLKLDQEIEAVVLSISVKEQKISLGV--------RQLEDNPW 348

Query: 955  AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKF--P 1011
            A  + R         +   +   V  +      + L E     G   VSD + T+K   P
Sbjct: 349  ADIESR-------FPIGTVIKGQVRNLTPYGAFVGLEEGID--GMIHVSDMSWTRKINHP 399

Query: 1012 QKQFLNGQSVIATVMALPSSSTAGRLLLLLKAI-SETETSSSKRAKKKSSYDVGSLVQAE 1070
             +    G  V A V+ +       R+ L +K + S+   S + R K      VG +V  +
Sbjct: 400  SEVLKKGDEVEAIVLEIKKEDQ--RVSLGIKQLESDPWESINDRFK------VGDMVTGQ 451

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
            + +I      +       G IHI+++++D    VE +    K+G  +TAR+I
Sbjct: 452  VAKIASFGAFVNLDGDIDGLIHISQLSEDH---VERVKDVIKVGDEITARVI 500



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 172/401 (42%), Gaps = 49/401 (12%)

Query: 188 HVGQLVSCIVLQLDDDKKEI--GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
           +VG++    +++++DD+K I   +R++  + R     +   LETV+EG  +   VK+I D
Sbjct: 141 YVGKVYEFKIVKVNDDRKNIVLSRREVIEAERAD--QRQRFLETVKEGDKVEGIVKNITD 198

Query: 246 HGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
            G  +   L    G L   +++     +    +  G  L+ V+  +DR ++ V L     
Sbjct: 199 FGAFVD--LRGMDGLLHITDMSWGRVNHPSEMLHIGQSLEVVILEVDREKERVSLGLKQM 256

Query: 302 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 361
           T +     + K   I+  V G     RV  +L  G  +       G V +  L      T
Sbjct: 257 TDNPWADIERK-YPINSHVKG-----RVTKLLPYGAFVELEKGVEGLVHVSELSWVKRIT 310

Query: 362 NWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHVKVGDIYDQS- 414
              +     +++ A +L +    + + L +     NP+  + +R P   V  G + + + 
Sbjct: 311 RPSDVLKLDQEIEAVVLSISVKEQKISLGVRQLEDNPWADIESRFPIGTVIKGQVRNLTP 370

Query: 415 --KVVRVDRGLGLLLDIP----STPVSTPAYV-TISDVAEEEVRKLEKKYKEGSCVRVRI 467
               V ++ G+  ++ +     +  ++ P+ V    D  E  V +++K+ +  S      
Sbjct: 371 YGAFVGLEEGIDGMIHVSDMSWTRKINHPSEVLKKGDEVEAIVLEIKKEDQRVS------ 424

Query: 468 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
           LG + LE        +  +E +   +   K G +V G+V  + SFGA V   G +  L  
Sbjct: 425 LGIKQLE--------SDPWESI---NDRFKVGDMVTGQVAKIASFGAFVNLDGDIDGLIH 473

Query: 528 LPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHK 566
           +  +SE  + +     KVG E+  RV+ V S  +RI ++ K
Sbjct: 474 ISQLSEDHVERVKDVIKVGDEITARVIKVDSIERRIGLSIK 514


>gi|195573449|ref|XP_002104706.1| GD18300 [Drosophila simulans]
 gi|194200633|gb|EDX14209.1| GD18300 [Drosophila simulans]
          Length = 1128

 Score =  103 bits (258), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 159/679 (23%), Positives = 287/679 (42%), Gaps = 70/679 (10%)

Query: 116 SGKLPRY-ANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNE 174
           +G+L  + A  + +  +   M + GVV E+    L  CL       AR   A+       
Sbjct: 55  NGQLEAFSAETLNMDTLQEDMLVMGVVKELTATALHYCL-------ARPDAAMSG----- 102

Query: 175 IEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGM 234
            + +E + L  +F VG++V    ++   +K + G+  + LSL+ + ++  L  +++++G 
Sbjct: 103 -DTSEYHDLTELFQVGRIVYGKAIK--TEKLDTGRVSLLLSLKPADVHGSLHHKSIKKGF 159

Query: 235 VLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDR-TRKV 293
           + +  V    +HGY++  G+     F+P    A+   +     L ++ V     + T   
Sbjct: 160 IFSGAVAEALEHGYVIESGVQGLQAFVPCEKPAQKLHVGQLAFLKVKTVHHDTHQSTCTC 219

Query: 294 VYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLT-YFTGTVDIF 352
           V +  D     +   K     ++D ++PG +V  +V   L++G+  S +   F+  V+  
Sbjct: 220 VQVEQD-----QLRIKSQNETNLDYILPGSIVRFKVAKHLKDGLKGSIMNESFSAYVNEH 274

Query: 353 HLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSH-------- 404
           HL N   T    + Y  ++  NAR+L+V P ++ V LTLN  +    A            
Sbjct: 275 HLANALDTL---DAYELNEDYNARVLYVMPLTKLVYLTLNLDIKTGAAVAKDDDEEEQEV 331

Query: 405 --VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE--KKYKEG 460
             ++VG + +++KV+R+  G G++L +        +Y +I    +    K E   KY   
Sbjct: 332 EPIQVGSVVEKAKVLRLGSG-GVVLLLNKKLKGIISYGSIRGNFKGNYDKDEVLSKYGRK 390

Query: 461 SCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG--KVIAVDSFGAIVQF 518
           +  +VRILG+  +E L       +     +F   D+  G +V            G  V+ 
Sbjct: 391 TKHKVRILGYDVIESLYYCSDDPNVVNEKLFCLEDINAGDLVTAKIFKKDDKIKGWSVRI 450

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAI 576
            G V  +     + +F +  P  ++ VG  L  RVL V ++R    V+++   +   + I
Sbjct: 451 -GKVNGI-----LEQFYLA-PNVRYDVGQSLKCRVLEVNAERKICYVSNRAEYLGKGMKI 503

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
           L+ YA A    +  G + + E     V+F NG++G   R  L      E SS +  GQ  
Sbjct: 504 LTDYASAHVGNVYMGTVVRCEDTYVLVKFGNGIKGVLHRQNLK-----ENSSFFE-GQTT 557

Query: 637 KCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDV-VTPNAVVVYVIAKGYS 695
           K RI++      +I L+      ++ E   V++ + +   ++V +T  A        G  
Sbjct: 558 KFRILTR--NKDQITLTLPEDKFQLGEICPVEITNALDAGLEVKITFAAEDDEEDEDGNP 615

Query: 696 K-----GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQ 750
           K     G IP   L+DHLE       V   G   D   ++ N  S  L    Y     + 
Sbjct: 616 KLEEFVGLIPLRLLSDHLELLHAQMRVHPAGSYTDAACIMQNIFS--LRDVPY----FSG 669

Query: 751 QLPSDASHIHPNSVVHGYV 769
           QL  D   +    ++  YV
Sbjct: 670 QLTKDWQSVQVGDIIRSYV 688


>gi|380494873|emb|CCF32825.1| rRNA biogenesis protein RRP5, partial [Colletotrichum higginsianum]
          Length = 565

 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 217/494 (43%), Gaps = 46/494 (9%)

Query: 49  DDVPVFPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKN--KKKKKKTERKANETVDD 106
           D+ P+FPRGGG  LT  E+ +I  E  A+    E  L   N   K KK+  RKA +T D 
Sbjct: 58  DEEPLFPRGGGSILTPLEQKQITMEAKADAAKEEAELFDPNVKSKAKKEKRRKAKDTKDV 117

Query: 107 LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---LARA 163
             +   D +          +  K +  G  + G +  ++   L I LP  L G   +A  
Sbjct: 118 KPARDEDAVK------IEGLNFKRLVKGSLVLGQITHIDTVQLTIALPNNLTGHVSIASI 171

Query: 164 ADALDPILDNEIEANEDNL------------LPTIFHVGQLVSCIVLQLDDDKKE-IGKR 210
           +D  +  L+ ++ A ++              L ++F +GQ V   VL   D+      KR
Sbjct: 172 SDTTNSKLEKDLNAADEESDDDEEEDDEGIDLKSMFKIGQYVRTHVLSTADESGPGKAKR 231

Query: 211 KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPS-FTGFLPRNNLAEN 269
           +I LSLR +    G++ + V     L A + S++DHGY +  G+     GFLP+  +  +
Sbjct: 232 RIELSLRPAEANAGITGDDVVAHTTLMASIASVQDHGYEMDLGIEGDLKGFLPKKEVGPD 291

Query: 270 -SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328
                ++PG +   VV+S+  T  VV LS+DP  +           +I+  +PG +    
Sbjct: 292 MDEASLRPGAVCLCVVKSV--TGIVVQLSTDPLKLGNTSLVASTAPTINSFLPGSLADVL 349

Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSR--A 386
           +  +   G+    L +   T D+ H        + +  Y    +V ARI+   P +R   
Sbjct: 350 LTEVTSRGIQGKLLGHLPVTADLIHSGVGPDNVDLEAKYTVGTRVKARIICNFPAAREPK 409

Query: 387 VGLTLNPYLL-----------HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
           +G++L P+++             +AP   + +    ++  V +V+  +GL +D     ++
Sbjct: 410 LGISLLPHIVGLQPKSSGKGSRAKAPLDILPIASFVEKCTVRKVEPEIGLYVDTGVPGIA 469

Query: 436 TPAYVTISDVAEEEVRKL---EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFT 492
              +V IS V + +V  L      +K GS  R R++G+  L+G+     + +  +     
Sbjct: 470 --GFVHISRVKDGKVDALYETSGPHKVGSTHRGRVVGYSSLDGMFLLSFEQNILDQPFIR 527

Query: 493 HSDVKPGMVVKGKV 506
             DV  G VV GK+
Sbjct: 528 LEDVPVGEVVSGKI 541


>gi|291456496|ref|ZP_06595886.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
 gi|384197191|ref|YP_005582935.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
 gi|417942230|ref|ZP_12585505.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
 gi|291381773|gb|EFE89291.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
 gi|333109696|gb|AEF26712.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
 gi|339478978|gb|ABE95439.1| SSU ribosomal protein S1P [Bifidobacterium breve UCC2003]
 gi|376167330|gb|EHS86177.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
          Length = 491

 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 191/406 (47%), Gaps = 55/406 (13%)

Query: 1137 ELSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH---- 1186
            E +I+ + + +++IG++  F +  D +I     G  V G V K+D++  LL I       
Sbjct: 3    ENNIEVTKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGV 62

Query: 1187 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
            + ++   +    +P E+ E      +G  +    L + KE K  RL+L   +        
Sbjct: 63   IPSRELSIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWG 114

Query: 1247 DISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1305
            DI        I E D +V G + + + G  GL+V IG   +      E++ +    P  G
Sbjct: 115  DIEK------IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG 166

Query: 1306 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1365
                Q +K K+LE+ +      +V LS R  L+   S                   +  L
Sbjct: 167  ----QKIKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQL 206

Query: 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1425
                I +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V
Sbjct: 207  KKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDV 265

Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVG 1484
            +   +R+ ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + G
Sbjct: 266  DLDRERISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEG 319

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L H+SEL+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 320  LVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|212716121|ref|ZP_03324249.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
            16992 = JCM 1194]
 gi|212661488|gb|EEB22063.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
            16992 = JCM 1194]
          Length = 491

 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 188/400 (47%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V KVD++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFGDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G    Q 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QT 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQTIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFGDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQTIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 46.2 bits (108), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 113/256 (44%), Gaps = 37/256 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R      +IG+ +   +L ++K +  + L  R + +       +  ++  +T
Sbjct: 149  PASLVEMRRVRDLSPYIGQTIKAKILELDKNRNNVVLSRRQYLE-------ETQSEVRET 201

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+ +   G I  G +S I++   G  V +G  + G +H +EL    +  P      G  V
Sbjct: 202  FLSQLKKGQIREGVVSSIVNF--GAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         + LSL+++ +                P +   +     P  IV+
Sbjct: 259  TVEVLDVDLDRE---RISLSLKATQE---------------DPWQRFARTH--VPGQIVK 298

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+   +R+
Sbjct: 299  GKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRI 358

Query: 1433 EVTLKTSDSRTASQSE 1448
             ++LK ++      SE
Sbjct: 359  SLSLKQANDSVDPASE 374


>gi|225351875|ref|ZP_03742898.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
            pseudocatenulatum DSM 20438 = JCM 1200]
 gi|225157122|gb|EEG70461.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
            pseudocatenulatum DSM 20438 = JCM 1200]
          Length = 491

 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 188/400 (47%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V KVD++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G    Q 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QT 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQTIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQTIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 46.2 bits (108), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 113/256 (44%), Gaps = 37/256 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R      +IG+ +   +L ++K +  + L  R + +       +  ++  +T
Sbjct: 149  PASLVEMRRVRDLSPYIGQTIKAKILELDKNRNNVVLSRRQYLE-------ETQSEVRET 201

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+ +   G I  G +S I++   G  V +G  + G +H +EL    +  P      G  V
Sbjct: 202  FLSQLKKGQIREGVVSSIVNF--GAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         + LSL+++ +                P +   +     P  IV+
Sbjct: 259  TVEVLDVDLDRE---RISLSLKATQE---------------DPWQRFARTH--VPGQIVK 298

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+   +R+
Sbjct: 299  GKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRI 358

Query: 1433 EVTLKTSDSRTASQSE 1448
             ++LK ++      SE
Sbjct: 359  SLSLKQANDSVDPASE 374


>gi|414883929|tpg|DAA59943.1| TPA: hypothetical protein ZEAMMB73_646840 [Zea mays]
          Length = 208

 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 76/106 (71%), Gaps = 10/106 (9%)

Query: 1597 LEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKD 1656
            LE N+ +   ++ NG   N           +K+++  KK+ +++RE EI A EER L++D
Sbjct: 50   LEDNISNTCLEIANGTEANA----------KKSDKQLKKEARKQRELEISAMEERALQED 99

Query: 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1702
             P+TPD+FE+LVRSSPNSSF+WIKYMA +L +ADV+KAR++AER++
Sbjct: 100  IPQTPDDFEKLVRSSPNSSFIWIKYMATLLDLADVKKARAVAERSV 145


>gi|119025692|ref|YP_909537.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154487492|ref|ZP_02028899.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis
            L2-32]
 gi|118765276|dbj|BAF39455.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
 gi|154084010|gb|EDN83055.1| putative ribosomal protein S1 [Bifidobacterium adolescentis L2-32]
          Length = 490

 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 188/400 (47%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V KVD++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G    Q 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 45.8 bits (107), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 113/256 (44%), Gaps = 37/256 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R      +IG+ +   +L ++K +  + L  R + +       +  ++  +T
Sbjct: 149  PASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLE-------ETQSEVRET 201

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+ +   G I  G +S I++   G  V +G  + G +H +EL    +  P      G  V
Sbjct: 202  FLSQLKKGQIREGVVSSIVNF--GAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         + LSL+++ +                P +   +     P  IV+
Sbjct: 259  TVEVLDVDLDRE---RISLSLKATQE---------------DPWQRFARTH--VPGQIVK 298

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+   +R+
Sbjct: 299  GKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRI 358

Query: 1433 EVTLKTSDSRTASQSE 1448
             ++LK ++      SE
Sbjct: 359  SLSLKQANDSVDPASE 374



 Score = 42.4 bits (98), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 425
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 482
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 543 FKVGAELVFRVLGV--KSKRITVTHKKT 568
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365


>gi|171743205|ref|ZP_02919012.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC
            27678]
 gi|283455814|ref|YP_003360378.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
 gi|306823050|ref|ZP_07456426.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
 gi|309801254|ref|ZP_07695383.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
 gi|171278819|gb|EDT46480.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27678]
 gi|283102448|gb|ADB09554.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
 gi|304553682|gb|EFM41593.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
 gi|308222143|gb|EFO78426.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
          Length = 490

 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 188/400 (47%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V KVD++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G    Q 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 113/256 (44%), Gaps = 37/256 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R      +IG+ +   +L ++K +  + L  R + +       +  ++  +T
Sbjct: 149  PASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLE-------ETQSEVRET 201

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+ +   G I  G +S I++   G  V +G  + G +H +EL    +  P      G  V
Sbjct: 202  FLSQLKKGQIREGVVSSIVNF--GAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         + LSL+++ +                P +   +     P  IV+
Sbjct: 259  TVEVLDVDLDRE---RISLSLKATQE---------------DPWQRFARTH--VPGQIVK 298

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+   +R+
Sbjct: 299  GKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRI 358

Query: 1433 EVTLKTSDSRTASQSE 1448
             ++LK ++      SE
Sbjct: 359  SLSLKQANDSVDPASE 374



 Score = 42.0 bits (97), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 425
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 482
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 543 FKVGAELVFRVLGV--KSKRITVTHKKT 568
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365


>gi|310287294|ref|YP_003938552.1| 30S ribosomal protein S1 [Bifidobacterium bifidum S17]
 gi|309251230|gb|ADO52978.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17]
          Length = 490

 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 191/400 (47%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +     LS Y  GQ 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVR---DLSPYI-GQK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ ++GE+V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKSGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKSGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE       SG  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKSGEEVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 46.2 bits (108), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 169/405 (41%), Gaps = 78/405 (19%)

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV----NDDKSNVVENLFSNFKIGQ 1115
            ++D G LV+  + +I   E+ L  G    G I   E+    + D   VVE       +G 
Sbjct: 32   NFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVE-------VGD 84

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
            T+ A ++ K +K                 L +S+  ++           +R  G + K+ 
Sbjct: 85   TIEALVVTKEDKE--------------GRLILSKKRAQY----------ERAWGDIEKIK 120

Query: 1176 NEWALL--TISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKE 1226
                ++  T+   +K  L I+D     + P+ L E +R      +IG+ +   +L ++K 
Sbjct: 121  EADGVVEGTVIEAVKGGL-IVDIGLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKN 179

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGP 1283
            +  + L  R + +       +  ++  +TF+ +   G I  G +S I++   G  V +G 
Sbjct: 180  RNNVVLSRRQYLE-------ETQSEVRETFLSQLKKGQIREGVVSSIVNF--GAFVDLG- 229

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
             + G +H +EL    +  P      G  V  +VL++         + LSL+++ +     
Sbjct: 230  GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRE---RISLSLKATQE----- 281

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
                       P +   +     P  IV+G V  +   G FI +   ++  V +S L++ 
Sbjct: 282  ----------DPWQRFARTH--VPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANR 329

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
            +VE+PE     G+ V  +V+ V+   +R+ ++LK ++      SE
Sbjct: 330  HVENPETVVKSGEEVFVKVIDVDLDRRRISLSLKQANDSVDPASE 374



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 425
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 482
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 543 FKVGAELVFRVLGV--KSKRITVTHKKT 568
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKSGEEVFVKVIDVDLDRRRISLSLKQA 365


>gi|421735863|ref|ZP_16174741.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
 gi|407296849|gb|EKF16353.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
          Length = 490

 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 190/400 (47%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +     LS Y  GQ 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVR---DLSPYI-GQK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 169/405 (41%), Gaps = 78/405 (19%)

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV----NDDKSNVVENLFSNFKIGQ 1115
            ++D G LV+  + +I   E+ L  G    G I   E+    + D   VVE       +G 
Sbjct: 32   NFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVE-------VGD 84

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
            T+ A ++ K +K                 L +S+  ++           +R  G + K+ 
Sbjct: 85   TIEALVVTKEDKE--------------GRLILSKKRAQY----------ERAWGDIEKIK 120

Query: 1176 NEWALL--TISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKE 1226
                ++  T+   +K  L I+D     + P+ L E +R      +IG+ +   +L ++K 
Sbjct: 121  EADGVVEGTVIEAVKGGL-IVDIGLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKN 179

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGP 1283
            +  + L  R + +       +  ++  +TF+ +   G I  G +S I++   G  V +G 
Sbjct: 180  RNNVVLSRRQYLE-------ETQSEVRETFLSQLKKGQIREGVVSSIVNF--GAFVDLG- 229

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
             + G +H +EL    +  P      G  V  +VL++         + LSL+++ +     
Sbjct: 230  GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRE---RISLSLKATQE----- 281

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
                       P +   +     P  IV+G V  +   G FI +   ++  V +S L++ 
Sbjct: 282  ----------DPWQRFARTH--VPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANR 329

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
            +VE+PE     G+ V  +V+ V+   +R+ ++LK ++      SE
Sbjct: 330  HVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPASE 374



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 425
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 482
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 543 FKVGAELVFRVLGV--KSKRITVTHKKT 568
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365


>gi|311064142|ref|YP_003970867.1| 30S ribosomal protein S1 [Bifidobacterium bifidum PRL2010]
 gi|313139998|ref|ZP_07802191.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
 gi|390936652|ref|YP_006394211.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
 gi|310866461|gb|ADP35830.1| RpsA SSU ribosomal protein S1P [Bifidobacterium bifidum PRL2010]
 gi|313132508|gb|EFR50125.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
 gi|389890265|gb|AFL04332.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
          Length = 490

 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 188/400 (47%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G    Q 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ + GE+V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 154/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 46.2 bits (108), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 169/405 (41%), Gaps = 78/405 (19%)

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV----NDDKSNVVENLFSNFKIGQ 1115
            ++D G LV+  + +I   E+ L  G    G I   E+    + D   VVE       +G 
Sbjct: 32   NFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVE-------VGD 84

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
            T+ A ++ K +K                 L +S+  ++           +R  G + K+ 
Sbjct: 85   TIEALVVTKEDKE--------------GRLILSKKRAQY----------ERAWGDIEKIK 120

Query: 1176 NEWALL--TISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKE 1226
                ++  T+   +K  L I+D     + P+ L E +R      +IG+ +   +L ++K 
Sbjct: 121  EADGVVEGTVIEAVKGGL-IVDIGLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKN 179

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGP 1283
            +  + L  R + +       +  ++  +TF+ +   G I  G +S I++   G  V +G 
Sbjct: 180  RNNVVLSRRQYLE-------ETQSEVRETFLSQLKKGQIREGVVSSIVNF--GAFVDLG- 229

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
             + G +H +EL    +  P      G  V  +VL++         + LSL+++ +     
Sbjct: 230  GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRE---RISLSLKATQE----- 281

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
                       P +   +     P  IV+G V  +   G FI +   ++  V +S L++ 
Sbjct: 282  ----------DPWQRFARTH--VPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANR 329

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
            +VE+PE     G+ V  +V+ V+   +R+ ++LK ++      SE
Sbjct: 330  HVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPASE 374



 Score = 42.0 bits (97), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 425
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 482
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
              ++    TH    PG +VKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 543 FKVGAELVFRVLGV--KSKRITVTHKKT 568
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365


>gi|213692621|ref|YP_002323207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC
            15697 = JCM 1222]
 gi|213524082|gb|ACJ52829.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. infantis
            ATCC 15697 = JCM 1222]
          Length = 491

 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 187/400 (46%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G    Q 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKPGEAVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEAVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEAVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|410865869|ref|YP_006980480.1| 30S ribosomal protein S1 [Propionibacterium acidipropionici ATCC
            4875]
 gi|410822510|gb|AFV89125.1| 30S ribosomal protein S1 [Propionibacterium acidipropionici ATCC
            4875]
          Length = 503

 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 188/405 (46%), Gaps = 53/405 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            +TV ++GS   F    D +I     G  VTG V KVD +  LL I       + ++   +
Sbjct: 30   VTVDDLGSPEAFMAAVDATIKYFNDGDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 89

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+        +G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 90   KHDVDPFEV------VQVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 136

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G    Q ++ 
Sbjct: 137  KIKDEDGVVNGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEA 190

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S    +              ++ L    I +G 
Sbjct: 191  KIIELDKNRN---NVVLSRRAWLEQTQSEVRHNF-------------LQQLQKGQIRKGV 234

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 235  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSL 293

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      + LH +G IV G++ ++  +G F+ +E+  + GL HVSEL+E
Sbjct: 294  SLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAE 347

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1538
             HVD  E I   G++V VKI+ +D ++RRISL +K +    D D+
Sbjct: 348  RHVDLPEQIVSVGQEVMVKIIDIDLDRRRISLSLKQANEGIDVDS 392



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 153/349 (43%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    V P +  +VG E+   V   + 
Sbjct: 55  GDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVQVGDEIEALVQQKED 114

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +     + +G + ++ K G  V    G++GF P S
Sbjct: 115 KEGRLILSKKRAQYERAWGTIEKIKDEDG--VVNGTVIEVVKGGLIVDI--GLRGFLPAS 170

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 171 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRHNFLQQLQ 226

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 227 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 281

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 282 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 336

Query: 786 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  + +  DL  +   VGQ V   I+D++ +  RI+LSLKQ+
Sbjct: 337 EGLVHVSELAE-RHVDLPEQIVSVGQEVMVKIIDIDLDRRRISLSLKQA 384


>gi|296453875|ref|YP_003661018.1| RNA-binding S1 domain-containing protein [Bifidobacterium longum
            subsp. longum JDM301]
 gi|384199820|ref|YP_005585563.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC
            15697 = JCM 1222]
 gi|296183306|gb|ADH00188.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. longum
            JDM301]
 gi|320458772|dbj|BAJ69393.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC
            15697 = JCM 1222]
          Length = 491

 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 187/400 (46%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G    Q 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKPGEAVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEAVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEAVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|312133007|ref|YP_004000346.1| rpsa [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773993|gb|ADQ03481.1| RpsA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 491

 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 195/415 (46%), Gaps = 60/415 (14%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G    Q 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEE 1545
            L+  HV+N ET+ + GE V VK++ VD ++RRISL +K +     +D++  +SE+
Sbjct: 326  LANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA-----SDSVDPASED 375



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQASDSVDPAS 373



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|317481889|ref|ZP_07940916.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
 gi|316916680|gb|EFV38075.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
          Length = 491

 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 187/400 (46%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G    Q 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|227546158|ref|ZP_03976207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum ATCC
            55813]
 gi|239621800|ref|ZP_04664831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis CCUG
            52486]
 gi|322688831|ref|YP_004208565.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
            157F]
 gi|322690819|ref|YP_004220389.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
            1217]
 gi|384201809|ref|YP_005587556.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
            91563]
 gi|419846596|ref|ZP_14369831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 1-6B]
 gi|419850464|ref|ZP_14373454.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
 gi|419853759|ref|ZP_14376564.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 2-2B]
 gi|419855926|ref|ZP_14378671.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
 gi|227213139|gb|EEI81011.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis ATCC
            55813]
 gi|239514991|gb|EEQ54858.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis CCUG
            52486]
 gi|291517108|emb|CBK70724.1| SSU ribosomal protein S1P [Bifidobacterium longum subsp. longum F8]
 gi|320455675|dbj|BAJ66297.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
            1217]
 gi|320460167|dbj|BAJ70787.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
            157F]
 gi|338754816|gb|AEI97805.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
            91563]
 gi|386406831|gb|EIJ21825.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 2-2B]
 gi|386408991|gb|EIJ23869.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
 gi|386413633|gb|EIJ28225.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 1-6B]
 gi|386414587|gb|EIJ29140.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
          Length = 491

 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 187/400 (46%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G    Q 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|23465561|ref|NP_696164.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
 gi|189439608|ref|YP_001954689.1| 30S ribosomal protein S1 [Bifidobacterium longum DJO10A]
 gi|23326226|gb|AAN24800.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
 gi|189428043|gb|ACD98191.1| Ribosomal protein S1 [Bifidobacterium longum DJO10A]
          Length = 491

 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 187/400 (46%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G    Q 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 57.4 bits (137), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|261338679|ref|ZP_05966563.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
 gi|270276304|gb|EFA22158.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
          Length = 495

 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 174/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 36   GDLVEGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVE------VGDTI--E 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1278
             L + KE K  RL+L   +        DI        I E D +V G + + + G  GL+
Sbjct: 88   ALVVTKEDKEGRLILSKKRAQYERAWGDIEK------IKEDDGVVEGTVIEAVKG--GLI 139

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V IG   +      E++ +    P  G    Q +K K+LE+ +      +V LS R  L+
Sbjct: 140  VDIGLRGFLPASLVEMRRVRDLSPYIG----QKIKAKILELDKNRN---NVVLSRRQYLE 192

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
               S                   +  L    I +G V ++ + G F+ L   +D  + +S
Sbjct: 193  ETQSEVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVS 238

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV- 1457
             LS  +++ P +   +G  V   VL V+   +R+ ++LK +      +      +  HV 
Sbjct: 239  ELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVP 293

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G IV G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ + GE+V VK++ VD
Sbjct: 294  GQIVRGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVD 352

Query: 1518 KEKRRISLGMKSS 1530
             ++RRISL +K +
Sbjct: 353  LDRRRISLSLKQA 365



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G+V+ VD    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKE--DDGVVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVRGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 147/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEDDGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G ++ GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVRGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 47.8 bits (112), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 171/405 (42%), Gaps = 78/405 (19%)

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV----NDDKSNVVENLFSNFKIGQ 1115
            ++D G LV+ ++ ++   E+ L  G    G I   E+    + D   VVE       +G 
Sbjct: 32   NFDDGDLVEGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVE-------VGD 84

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
            T+ A ++ K +K                 L +S+  ++           +R  G + K+ 
Sbjct: 85   TIEALVVTKEDKE--------------GRLILSKKRAQY----------ERAWGDIEKIK 120

Query: 1176 NEWALL--TISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKE 1226
             +  ++  T+   +K  L I+D     + P+ L E +R      +IG+ +   +L ++K 
Sbjct: 121  EDDGVVEGTVIEAVKGGL-IVDIGLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKN 179

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGP 1283
            +  + L  R + +       +  ++  +TF+ +   G I  G +S I++   G  V +G 
Sbjct: 180  RNNVVLSRRQYLE-------ETQSEVRETFLSQLKKGQIREGVVSSIVNF--GAFVDLG- 229

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
             + G +H +EL    +  P      G  V  +VL++         + LSL+++ +     
Sbjct: 230  GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRE---RISLSLKATQE----- 281

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
                       P +   +     P  IV+G V  +   G FI +   ++  V +S L++ 
Sbjct: 282  ----------DPWQRFARTH--VPGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANR 329

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
            +VE+PE     G+ V  +V+ V+   +R+ ++LK ++      SE
Sbjct: 330  HVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPASE 374



 Score = 42.0 bits (97), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 425
           +K+ A+IL +D     V L+   YL   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 482
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
              ++    TH    PG +V+GKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 543 FKVGAELVFRVLGV--KSKRITVTHKKT 568
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKPGEEVFVKVIDVDLDRRRISLSLKQA 365


>gi|56963639|ref|YP_175370.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
 gi|56909882|dbj|BAD64409.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
          Length = 384

 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 185/374 (49%), Gaps = 49/374 (13%)

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
            S+G  VTG V KV+++ A + +        F +D     SEL       H+ KA    VL
Sbjct: 16   SVGDIVTGKVTKVEDKQAFVDVG-------FKVDGIVPISELS----SLHVEKA--SDVL 62

Query: 1222 SINKEKKLLRLVLRPFQDG---ISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1276
            S++ E   L L +   +D    +S K V      + ++    +G+++   +++++ G  G
Sbjct: 63   SVDDE---LELKVTKVEDDELILSKKAVQAEKAWEQLEEAYEKGEVIEAEVAEVVKG--G 117

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            LVV +G  + G +  + ++   V D  S Y +G+ ++ KV EI +         LS R+ 
Sbjct: 118  LVVDVG--VRGFIPASLVERHYVED-FSDY-KGKPLRLKVTEIDKDNNKLI---LSQRAV 170

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
            LD              +   K  + +  LS   +V+G V+ +TS G F+ +   +D  V 
Sbjct: 171  LDA-------------EIEEKKKQVLHSLSTGDVVEGKVQRLTSFGAFVDVG-GVDGLVH 216

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1456
            +S ++   VE P      G+ V  +VLSV+P S+RV +++K      A   E N  S   
Sbjct: 217  ISQIAHERVEHPSDVLSEGQEVRVKVLSVDPDSERVSLSIK---EMLAGPWE-NIESKFS 272

Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
             GDIV G +KR+ S+G F+ I    + GL H+S++S+ H+   + +   G++V+ K+L+V
Sbjct: 273  AGDIVTGTVKRLVSFGAFVEI-APGVEGLVHISQISKRHIGTPQEVLEEGQQVQAKVLEV 331

Query: 1517 DKEKRRISLGMKSS 1530
             +  RR+SL ++ +
Sbjct: 332  SEADRRVSLSIREA 345



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G VV+GKV  + SFGA V   GGV  L  +  ++   +  P      G E+  +VL V  
Sbjct: 189 GDVVEGKVQRLTSFGAFVDV-GGVDGLVHISQIAHERVEHPSDVLSEGQEVRVKVLSVDP 247

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            S+R++++ K+ L      I S ++ A D  I  G + ++   G FV    GV+G    S
Sbjct: 248 DSERVSLSIKEMLAGPWENIESKFS-AGD--IVTGTVKRLVSFGAFVEIAPGVEGLVHIS 304

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++       P  +   GQ V+ +++    A RR++LS 
Sbjct: 305 QISKRHIGTPQEVLEEGQQVQAKVLEVSEADRRVSLSI 342



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 151/403 (37%), Gaps = 91/403 (22%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G +TK+E    FV     V G  P SEL         S  HV +     ++S     
Sbjct: 20  IVTGKVTKVEDKQAFVDVGFKVDGIVPISEL---------SSLHVEKA--SDVLS----- 63

Query: 648 RRINLSFMMKPTRVSEDDLV-------------------KLGSLVSGVVDVVTPNAVVVY 688
             ++    +K T+V +D+L+                   + G ++   V  V    +VV 
Sbjct: 64  --VDDELELKVTKVEDDELILSKKAVQAEKAWEQLEEAYEKGEVIEAEVAEVVKGGLVVD 121

Query: 689 VIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS 748
           V  +G+   ++   H  +           +K       +  +D +++ L+LS +  L   
Sbjct: 122 VGVRGFIPASLVERHYVEDFSDYKGKPLRLK-------VTEIDKDNNKLILSQRAVLDAE 174

Query: 749 AQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY 807
            ++      H +    VV G V  +   G FV  +G + G    S+    +    S    
Sbjct: 175 IEEKKKQVLHSLSTGDVVEGKVQRLTSFGAFVD-VGGVDGLVHISQIAHERVEHPSDVLS 233

Query: 808 VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
            GQ VR  +L V+ ++ R++LS+K+      +         +E K               
Sbjct: 234 EGQEVRVKVLSVDPDSERVSLSIKEMLAGPWEN--------IESK--------------- 270

Query: 868 WVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG-------ATVESGSVI 920
               F  G ++ G V     FG  V       V G +   Q++          +E G  +
Sbjct: 271 ----FSAGDIVTGTVKRLVSFGAFVEI--APGVEGLVHISQISKRHIGTPQEVLEEGQQV 324

Query: 921 QAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKRE 963
           QA +L+V++A+R V LS+        REA S  Q +K+ R  E
Sbjct: 325 QAKVLEVSEADRRVSLSI--------REA-SEEQERKETRAYE 358


>gi|229817852|ref|ZP_04448134.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
            20098 = JCM 7096]
 gi|229784752|gb|EEP20866.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
            20098 = JCM 7096]
          Length = 490

 Score =  100 bits (249), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 187/400 (46%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    AKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  V    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTV--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G    Q 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IEAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ + GE V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 147/373 (39%), Gaps = 42/373 (11%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 694
            V+  +++      R+ LS        +  D+ K+     GVV+     AV   +I    
Sbjct: 85  TVEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKE-ADGVVEGTVIEAVKGGLIVDIG 143

Query: 695 SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL-P 753
            +G +P   +   +     +   I    E  ++L LD   +N++LS +  L  +  ++  
Sbjct: 144 LRGFLPASLV--EMRRVRDLSPYIGQKIEA-KILELDKNRNNVVLSRRQYLEETQSEVRE 200

Query: 754 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVR 813
           +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG  V 
Sbjct: 201 TFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGDKVT 259

Query: 814 SNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI 873
             +LDV+ +  RI+LSLK +        F + H                          +
Sbjct: 260 VEVLDVDLDRERISLSLK-ATQEDPWQRFARTH--------------------------V 292

Query: 874 IGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILD 926
            G +++GKV +   FGV +S E+   + G +   +LA   VE+       G  +   ++D
Sbjct: 293 PGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGETVFVKVID 350

Query: 927 VAKAERLVDLSLK 939
           V    R + LSLK
Sbjct: 351 VDLDRRRISLSLK 363



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 155/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTVEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ ++ +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIEAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 47.4 bits (111), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 169/405 (41%), Gaps = 78/405 (19%)

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV----NDDKSNVVENLFSNFKIGQ 1115
            ++D G LV+  + +I   E+ L  G    G I   E+    + D   VVE       +G 
Sbjct: 32   NFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVE-------VGD 84

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
            TV A ++ K +K                 L +S+  ++           +R  G + K+ 
Sbjct: 85   TVEALVVTKEDKE--------------GRLILSKKRAQY----------ERAWGDIEKIK 120

Query: 1176 NEWALL--TISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKE 1226
                ++  T+   +K  L I+D     + P+ L E +R      +IG+ +   +L ++K 
Sbjct: 121  EADGVVEGTVIEAVKGGL-IVDIGLRGFLPASLVEMRRVRDLSPYIGQKIEAKILELDKN 179

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGP 1283
            +  + L  R + +       +  ++  +TF+ +   G I  G +S I++   G  V +G 
Sbjct: 180  RNNVVLSRRQYLE-------ETQSEVRETFLSQLKKGQIREGVVSSIVNF--GAFVDLGG 230

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
             + G +H +EL    +  P      G  V  +VL++         + LSL+++ +     
Sbjct: 231  -VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRE---RISLSLKATQE----- 281

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
                       P +   +     P  IV+G V  +   G FI +   ++  V +S L++ 
Sbjct: 282  ----------DPWQRFARTH--VPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANR 329

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
            +VE+PE     G+ V  +V+ V+   +R+ ++LK ++      SE
Sbjct: 330  HVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPASE 374


>gi|421733456|ref|ZP_16172561.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
 gi|407078595|gb|EKE51396.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
          Length = 490

 Score =  100 bits (248), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 190/400 (47%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +     LS Y  GQ 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVR---DLSPYI-GQK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKNRN---NVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+  HV+N ET+ ++ E+V VK++ VD ++RRISL +K +
Sbjct: 326  LANRHVENPETVVKSSEEVFVKVIDVDLDRRRISLSLKQA 365



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 153/353 (43%), Gaps = 25/353 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P +  +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              S+  +    +        + V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 321 VHISELANRHVENPETVVKSSEEVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 152/376 (40%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-GSVIQAA------ 923
             + G +++GKV +   FGV +S E+   + G +   +LA   VE+  +V++++      
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKSSEEVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 168/405 (41%), Gaps = 78/405 (19%)

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEV----NDDKSNVVENLFSNFKIGQ 1115
            ++D G LV+  + +I   E+ L  G    G I   E+    + D   VVE       +G 
Sbjct: 32   NFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVE-------VGD 84

Query: 1116 TVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
            T+ A ++ K +K                 L +S+  ++           +R  G + K+ 
Sbjct: 85   TIEALVVTKEDKE--------------GRLILSKKRAQY----------ERAWGDIEKIK 120

Query: 1176 NEWALL--TISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKE 1226
                ++  T+   +K  L I+D     + P+ L E +R      +IG+ +   +L ++K 
Sbjct: 121  EADGVVEGTVIEAVKGGL-IVDIGLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKN 179

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGP 1283
            +  + L  R + +       +  ++  +TF+ +   G I  G +S I++   G  V +G 
Sbjct: 180  RNNVVLSRRQYLE-------ETQSEVRETFLSQLKKGQIREGVVSSIVNF--GAFVDLG- 229

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
             + G +H +EL    +  P      G  V  +VL++         + LSL+++ +     
Sbjct: 230  GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRE---RISLSLKATQE----- 281

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
                       P +   +     P  IV+G V  +   G FI +   ++  V +S L++ 
Sbjct: 282  ----------DPWQRFARTH--VPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANR 329

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
            +VE+PE      + V  +V+ V+   +R+ ++LK ++      SE
Sbjct: 330  HVENPETVVKSSEEVFVKVIDVDLDRRRISLSLKQANDSVDPASE 374


>gi|148658063|ref|YP_001278268.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
 gi|148570173|gb|ABQ92318.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
          Length = 514

 Score =  100 bits (248), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 101/185 (54%), Gaps = 11/185 (5%)

Query: 1353 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1412
            +TPG+   +++DL+P M ++G V ++   G F+ +    D  V +S +SD  +ESP    
Sbjct: 128  ETPGRP-RRVKDLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLV 186

Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSD-------SRTASQSEIN--NLSNLHVGDIVIG 1463
             IG  V  RV SVEP  +R+ +T++T +        R   + E++   L+ L VGD V G
Sbjct: 187  KIGDTVKVRVKSVEPDGRRISLTMRTKERSAEPRSGRGKKKPEVDYEKLAALRVGDNVEG 246

Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
             +  +  +G+F+ I      GL HVSEL+E  V+  E + + G+    K+L+VD    RI
Sbjct: 247  TVTGMAPFGVFVDI-GVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAAGARI 305

Query: 1524 SLGMK 1528
            SL ++
Sbjct: 306  SLSLR 310



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 113/262 (43%), Gaps = 34/262 (12%)

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G +T I  +G FV    G  G    SE+       PS +  +G  VK R+ S  P  RR
Sbjct: 146 EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRR 205

Query: 650 INLSFMMKP----------TRVSEDDLVKLGSL-----VSGVVDVVTPNAVVVYVIAKGY 694
           I+L+   K            +  E D  KL +L     V G V  + P  V V +   G 
Sbjct: 206 ISLTMRTKERSAEPRSGRGKKKPEVDYEKLAALRVGDNVEGTVTGMAPFGVFVDI---GV 262

Query: 695 SK-GTIPTEHLAD-HLEHATVMKSVIKPG--YEFDQLLVLDNESSNLLLSAKYSLINSAQ 750
            K G +    LA+  +E A   + V++ G  Y F ++L +D   + + LS + +     Q
Sbjct: 263 GKDGLVHVSELAEGRVEKA---EDVVQVGQTYTF-KVLEVDAAGARISLSLRRA--QRGQ 316

Query: 751 QLPSDASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           +L      +    ++ G +  +   G FV   +GR  G    S+  +   A +     VG
Sbjct: 317 KL----QQLEKGQILEGTISGLAPFGAFVDIGVGR-DGLVHISELSNTHVARVEDVVKVG 371

Query: 810 QSVRSNILDVNSETGRITLSLK 831
             V+  +LDV+ ++ RI+LSL+
Sbjct: 372 DRVQVRVLDVDPQSKRISLSLR 393



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 118/275 (42%), Gaps = 27/275 (9%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
            G  ++  +T I    + +  G+G  G +HI+E++D +   +E+     KIG TV  R+  
Sbjct: 142  GMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTR---IESPSDLVKIGDTVKVRV-- 196

Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSEIGSK---LLFEE-CDVSIGQRVTGYVYKVDNEWA 1179
            KS +PD ++  L   + + S    S  G K   + +E+   + +G  V G V  +     
Sbjct: 197  KSVEPDGRRISLTMRTKERSAEPRSGRGKKKPEVDYEKLAALRVGDNVEGTVTGMAPFGV 256

Query: 1180 LLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239
             + I       + + + A     +++ +    +G+  T  VL ++     + L LR  Q 
Sbjct: 257  FVDIGVGKDGLVHVSELAE--GRVEKAEDVVQVGQTYTFKVLEVDAAGARISLSLRRAQR 314

Query: 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICV 1299
            G            +Q  + +G I+ G IS +     G  V IG    G VH +EL N  V
Sbjct: 315  G----------QKLQQ-LEKGQILEGTISGLAP--FGAFVDIGVGRDGLVHISELSNTHV 361

Query: 1300 SDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            +        G  V+ +VL++    +    + LSLR
Sbjct: 362  ARVEDVVKVGDRVQVRVLDVDPQSK---RISLSLR 393



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 25/213 (11%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D+ PGM ++G+V ++  +G  V    G   L  +  MS+  I  P    K+G  +  RV 
Sbjct: 138 DLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVK 197

Query: 555 GVK--SKRITVT---------------HKKTLVK-SKLAILSSYAEATDRLITHGWITKI 596
            V+   +RI++T                KK  V   KLA L       D +   G +T +
Sbjct: 198 SVEPDGRRISLTMRTKERSAEPRSGRGKKKPEVDYEKLAAL----RVGDNV--EGTVTGM 251

Query: 597 EKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
              G FV    G  G    SEL      +   +  VGQ    +++    A  RI+LS + 
Sbjct: 252 APFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAAGARISLS-LR 310

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 689
           +  R  +   ++ G ++ G +  + P    V +
Sbjct: 311 RAQRGQKLQQLEKGQILEGTISGLAPFGAFVDI 343


>gi|183601485|ref|ZP_02962855.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            HN019]
 gi|219683973|ref|YP_002470356.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            AD011]
 gi|241191015|ref|YP_002968409.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            Bl-04]
 gi|241196421|ref|YP_002969976.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis DSM
            10140]
 gi|384194007|ref|YP_005579753.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            BLC1]
 gi|384195573|ref|YP_005581318.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis V9]
 gi|387820881|ref|YP_006300924.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            B420]
 gi|387822557|ref|YP_006302506.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            Bi-07]
 gi|423679541|ref|ZP_17654417.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis BS
            01]
 gi|183219091|gb|EDT89732.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            HN019]
 gi|219621623|gb|ACL29780.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            AD011]
 gi|240249407|gb|ACS46347.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            Bl-04]
 gi|240250975|gb|ACS47914.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis DSM
            10140]
 gi|295794004|gb|ADG33539.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis V9]
 gi|345282866|gb|AEN76720.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
            BLC1]
 gi|366041185|gb|EHN17689.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis BS
            01]
 gi|386653582|gb|AFJ16712.1| SSU ribosomal protein S1p [Bifidobacterium animalis subsp. lactis
            B420]
 gi|386655165|gb|AFJ18294.1| SSU ribosomal protein S1p [Bifidobacterium animalis subsp. lactis
            Bi-07]
          Length = 493

 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 171/369 (46%), Gaps = 41/369 (11%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G V KVD++  LL I    +  +     + E S  ++      +    T   L +
Sbjct: 36   GDLVEGTVVKVDHDEVLLDIGYKTEGVI----PSRELSIKKDVDPDDVVKVGDTIEALVV 91

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIG 1282
             KE K  RL+L   +        DI        I E D +V G + + + G  GL+V IG
Sbjct: 92   TKEDKEGRLILSKKRAQYERAWGDIEK------IKENDGVVEGTVIEAVKG--GLIVDIG 143

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
               +      E++ +    P  G    Q +K KVLE+ +      +V LS R  L+   S
Sbjct: 144  LRGFLPASLVEMRRVRDLSPYIG----QKIKAKVLELDKNRN---NVVLSRRQYLEETQS 196

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
                               +  L    I +G V ++ + G F+ L   +D  + +S LS 
Sbjct: 197  EVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSW 242

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIV 1461
             +++ P +   +G  V   VL V+   +R+ ++LK +      +      +  HV G IV
Sbjct: 243  KHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIV 297

Query: 1462 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
             G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++R
Sbjct: 298  RGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRR 356

Query: 1522 RISLGMKSS 1530
            RISL +K +
Sbjct: 357  RISLSLKQA 365



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 21/257 (8%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 641
           +  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +++      
Sbjct: 125 VVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKVLELDKNR 180

Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 702 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
            P  +V G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQIVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDV 351

Query: 820 NSETGRITLSLKQSCCS 836
           + +  RI+LSLKQ+  S
Sbjct: 352 DLDRRRISLSLKQANDS 368



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 114/259 (44%), Gaps = 37/259 (14%)

Query: 1197 AYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             + P+ L E +R      +IG+ +   VL ++K +  + L  R + +       +  ++ 
Sbjct: 146  GFLPASLVEMRRVRDLSPYIGQKIKAKVLELDKNRNNVVLSRRQYLE-------ETQSEV 198

Query: 1253 MQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
             +TF+ +   G I  G +S I++   G  V +G  + G +H +EL    +  P      G
Sbjct: 199  RETFLSQLKKGQIREGVVSSIVNF--GAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVG 255

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
              V  +VL++         + LSL+++ +                P +   +     P  
Sbjct: 256  DKVTVEVLDVDLDRE---RISLSLKATQE---------------DPWQRFARTH--VPGQ 295

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+   
Sbjct: 296  IVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDR 355

Query: 1430 KRVEVTLKTSDSRTASQSE 1448
            +R+ ++LK ++      SE
Sbjct: 356  RRISLSLKQANDSVDPNSE 374



 Score = 45.8 bits (107), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 147/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDDVVKVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKENDGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KVLELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G ++ GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVRGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|408501167|ref|YP_006865086.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
 gi|408465991|gb|AFU71520.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
          Length = 501

 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 186/395 (47%), Gaps = 47/395 (11%)

Query: 1144 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
             + V++IGS+  F +  D +I     G  V G V K+D++  LL I    +  +     +
Sbjct: 10   QVAVNDIGSEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----PS 65

Query: 1198 YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI 1257
             E S  ++      +    T   L + KE K  RL+L   +        DI        I
Sbjct: 66   RELSIKKDVDPDDVVQVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------I 119

Query: 1258 HEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
             E D +V G + + + G  GL+V IG   +      E++ +     LS Y  GQ +K K+
Sbjct: 120  KEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVR---DLSPYI-GQKIKAKI 173

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            LE+ +      +V LS R  L+   S                   +  L    I +G V 
Sbjct: 174  LELDKNRN---NVVLSRRQYLEETQSEVRETF-------------MAQLKKGQIREGTVS 217

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++L
Sbjct: 218  SIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDMDRERISLSL 276

Query: 1437 KTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1495
            K +      +      +  HV G IV G++ ++  +G+F+++E+  + GL H+SEL+  H
Sbjct: 277  KAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFVSVED-GIEGLVHISELANRH 330

Query: 1496 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            V+N ET+ + GE++ VK++ VD ++RRISL +K +
Sbjct: 331  VENPETVVKQGEEIFVKVIDVDLDRRRISLSLKQA 365



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 124/288 (43%), Gaps = 23/288 (7%)

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +I+      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFMAQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  G V  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGTVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G FV     + G 
Sbjct: 264 DVDMDRERISLSLKATQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFVSVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              S+  +    +       G+ +   ++DV+ +  RI+LSLKQ+  S
Sbjct: 321 VHISELANRHVENPETVVKQGEEIFVKVIDVDLDRRRISLSLKQADDS 368



 Score = 45.1 bits (105), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           ++L LD   +N++LS +  L  +  ++  +  + +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQYLEETQSEVRETFMAQLKKGQIREGTVSSIVNFGAFVD-LGG 230

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDMDRERISLSLK-ATQEDPWQRFAR 289

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
            H                          + G +++GKV +   FGV VS E+   + G +
Sbjct: 290 TH--------------------------VPGQIVKGKVTKIVQFGVFVSVEDG--IEGLV 321

Query: 905 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
              +LA   VE+       G  I   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKQGEEIFVKVIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 19/208 (9%)

Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 425
           +K+ A+IL +D     V L+   YL   ++       + +K G I + +    V+   G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFMAQLKKGQIREGTVSSIVN--FGA 224

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 482
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDMDRERISLSLKATQ 280

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
              ++    TH    PG +VKGKV  +  FG  V    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQIVKGKVTKIVQFGVFVSVEDGIEGLVHISELANRHVENPETV 337

Query: 543 FKVGAELVFRVLGV--KSKRITVTHKKT 568
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKQGEEIFVKVIDVDLDRRRISLSLKQA 365


>gi|403220619|dbj|BAM38752.1| uncharacterized protein TOT_010001225 [Theileria orientalis strain
           Shintoku]
          Length = 663

 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 154/607 (25%), Positives = 263/607 (43%), Gaps = 85/607 (14%)

Query: 89  NKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKD 148
           NK  K K+    +  ++ L +        KLP      +L++++ G  + G VA V    
Sbjct: 28  NKVNKPKSHSSLSPEINGLTTPSNYPEDYKLP------SLESLNPGSLVLGSVALVTPFG 81

Query: 149 LVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIG 208
           L I +   + G A+ ++  D +++++   +EDNL  + F VG  V C VL       E+ 
Sbjct: 82  LRIHIFNNIVGFAKYSELFD-LVESKSGGSEDNL-ASPFSVGSNVVCYVL-------EVY 132

Query: 209 KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGL---PSFTGFLPRNN 265
              + LSL+ SL+ K L    +  G++L A V S EDHG+ L F +    + +GF+  + 
Sbjct: 133 HSSVALSLKPSLVNKNLRPNNLFAGLLLPATVLSQEDHGFTLSFNVNLKSAISGFVMYD- 191

Query: 266 LAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT-VSKCV-------TKDLKGISI- 316
             E S   VK   + +    S   T  V+  S +P+  + KCV         DL   ++ 
Sbjct: 192 --EKSREGVKNEFIKRYPPSS---TAHVIVNSMNPERGLVKCVWPWEYKTPMDLHTATVF 246

Query: 317 DLLVPGMMVSTRVQSI----LEN-------GVMLSFLTYFTGTVDIFH-LQNTFPTTNWK 364
           D+L PG++++  V  +     EN       G  +  L   T  V   H L++  P  + +
Sbjct: 247 DVLKPGLLLTAEVSEVHRLKCENSYKQPLSGYTVKCLGSLTAFVSPLHSLESYKPADSAE 306

Query: 365 N---DYNQHKKVN----ARILFVDPTSRAVGLTLNPYLLHNRAPP--SHVKVGDIYDQSK 415
               + +  K+VN    AR+++VD  +R + ++L   LL  R P   +H  +       K
Sbjct: 307 GSLGNLDDCKEVNDRAEARLIYVDFEARKLYVSLQWQLLKWRGPLGLAHKNLKHTVMSCK 366

Query: 416 VVR-VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSCVRVRILG 469
           VVR +  GL L  +    P ST  + +I DV +++  K         Y  G+    R+L 
Sbjct: 367 VVRSLSSGLVLEHEEEKEP-STLFFCSIKDVVDDKSLKPATILTSSTYSVGTVHDCRVLD 425

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
           F +L  L    LK S  +    +  +     +V+GK + + + GAIVQ    V    P+ 
Sbjct: 426 FNYLTRLTHVALKESVIKEKYASAFEFSASELVRGKTVKLVNSGAIVQLSSLVYGKVPVG 485

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK-----SKLAILSSYAE 582
           H+++    K  + F+ G  +  RVL       R+ +T K +LV      ++   L    +
Sbjct: 486 HLTDVPPTKVPENFQTGRNMRLRVLRFDHARNRLVLTAKPSLVNDTDPAARFDHLHVGKK 545

Query: 583 ATDRLIT---HGWITKIEKHGCFVRFYNGVQGFAPR------SELGLDPGCEPSSMYHVG 633
            T  +I      ++ + +     ++FY  +Q +  R       ELG+D            
Sbjct: 546 LTGYIINMKEKNYMDEKQNERIVIKFYGDLQTYMDRHEVERAEELGVD--------LKTD 597

Query: 634 QVVKCRI 640
            VVKC +
Sbjct: 598 SVVKCAV 604


>gi|384915508|ref|ZP_10015724.1| 30S ribosomal protein S1 [Methylacidiphilum fumariolicum SolV]
 gi|384527058|emb|CCG91595.1| 30S ribosomal protein S1 [Methylacidiphilum fumariolicum SolV]
          Length = 558

 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 194/405 (47%), Gaps = 55/405 (13%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAV 1216
            V +G  V G V  V +  A + +   +   + I D ++     PSE+        +G+ +
Sbjct: 179  VHVGDLVKGVVKNVTDFGAFIDLD-GIDGLIHITDMSWGRINHPSEI------LKVGQEI 231

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               V+ +++EK+ + L       G+  KT +   +N++     G  V G++  +     G
Sbjct: 232  EVVVIDVDREKERVSL-------GLKQKTPN-PWENIEEKYPVGTKVKGKVVNLAPY--G 281

Query: 1277 LVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
              +++ P + G VH +E+     ++ P      GQ V+  VL+I++        E  L  
Sbjct: 282  AFIELEPGIEGLVHISEISWTQKITKPSEVLSMGQEVEAMVLDINKA-------EQKLSL 334

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            SL  +   N  D ++++  PG             IV+G VKN ++ G +I L   LD  +
Sbjct: 335  SLKALE-VNPWDKASELYPPG------------TIVKGKVKNFSAYGAYIELENALDGFI 381

Query: 1396 LLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
             +++LS    +  P +    G+ +  +VL ++  ++++ + +K        + E      
Sbjct: 382  HVNDLSWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKILLGIKQLTEDPWKEIE----KK 437

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
              VG+IV G++ ++ S+G FI + +  + GL H+S++S D V  ++ + + G++V  +I+
Sbjct: 438  YKVGEIVSGKVSKIASFGAFIQLAD-EIDGLVHISQISADRVAKVKDVLKVGQEVSARII 496

Query: 1515 KVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE---AIEEVGS 1556
            K+DKE+RRI L +K+ ++  +    Q+  E E  E     EE+GS
Sbjct: 497  KIDKEERRIGLSIKALHYTPE----QLEKEREKMEFSRPAEELGS 537



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 138/280 (49%), Gaps = 34/280 (12%)

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP--LSGYDEGQ 1310
            ++TF  EG  + G++ +++ G  GL++ IG        F     I V  P  L  Y EG 
Sbjct: 90   LKTF-EEGGTITGKVKQVVKG--GLMLNIGVE-----AFLPASQIDVVPPKNLKEY-EGA 140

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
             + CK+++IS   +   +V LS R  ++   +              K L+ +E +    +
Sbjct: 141  TLTCKIVKISEERK---NVVLSRREIVEAERNQ-------------KRLQFLEKVHVGDL 184

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            V+G VKNVT  G FI L   +D  + ++++S G +  P +   +G+ +   V+ V+   +
Sbjct: 185  VKGVVKNVTDFGAFIDLD-GIDGLIHITDMSWGRINHPSEILKVGQEIEVVVIDVDREKE 243

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            RV + LK    +T +  E N      VG  V G++  +  YG FI +E   + GL H+SE
Sbjct: 244  RVSLGLK---QKTPNPWE-NIEEKYPVGTKVKGKVVNLAPYGAFIELE-PGIEGLVHISE 298

Query: 1491 LS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            +S    +     +   G++V+  +L ++K ++++SL +K+
Sbjct: 299  ISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSLSLKA 338



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 122/573 (21%), Positives = 243/573 (42%), Gaps = 96/573 (16%)

Query: 569  LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
            +V+  LA +  + E +   I  G +         V      +G  P SE       EP S
Sbjct: 1    MVEMTLASIPDFVEGS---IVKGKVVDKNSKEVVVDIGYKSEGIIPLSEF-----EEPES 52

Query: 629  MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAV 685
            +  VGQ ++  + S       + LS      + + D ++K    G  ++G V  V    +
Sbjct: 53   I-QVGQEIEVLLESLENEEGMVVLSRQKAAQKQNWDKILKTFEEGGTITGKVKQVVKGGL 111

Query: 686  VVYVIAKGYSKGT----IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
            ++ +  + +   +    +P ++L ++ E AT+   ++K          +  E  N++LS 
Sbjct: 112  MLNIGVEAFLPASQIDVVPPKNLKEY-EGATLTCKIVK----------ISEERKNVVLSR 160

Query: 742  KYSL-INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRA 800
            +  +     Q+       +H   +V G V N+ + G F+   G + G    +    G+  
Sbjct: 161  REIVEAERNQKRLQFLEKVHVGDLVKGVVKNVTDFGAFIDLDG-IDGLIHITDMSWGRIN 219

Query: 801  DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSK 860
              S+   VGQ +   ++DV+ E  R++L LKQ   +  +         +EEK        
Sbjct: 220  HPSEILKVGQEIEVVVIDVDREKERVSLGLKQKTPNPWEN--------IEEK-------- 263

Query: 861  HNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GA 912
                       + +G+ ++GKV     +G  +  E    + G +   +++          
Sbjct: 264  -----------YPVGTKVKGKVVNLAPYGAFIELE--PGIEGLVHISEISWTQKITKPSE 310

Query: 913  TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
             +  G  ++A +LD+ KAE+ + LSLK + ++ + +A+         + +   K+   + 
Sbjct: 311  VLSMGQEVEAMVLDINKAEQKLSLSLKALEVNPWDKASELYPPGTIVKGK--VKNFSAY- 367

Query: 973  TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKF--PQKQFLNGQSVIATVMALP 1029
               A +E+  EN L           G+  V+D + T+K   P +    G+ + A V+ + 
Sbjct: 368  --GAYIEL--ENAL----------DGFIHVNDLSWTRKINHPSEVLKKGEEIEAKVLEI- 412

Query: 1030 SSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHG 1089
               T  ++LL +K ++E      K  +KK  Y VG +V  ++++I      ++      G
Sbjct: 413  -DKTNQKILLGIKQLTE---DPWKEIEKK--YKVGEIVSGKVSKIASFGAFIQLADEIDG 466

Query: 1090 RIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +HI++++ D+   V+++    K+GQ V+ARII
Sbjct: 467  LVHISQISADRVAKVKDV---LKVGQEVSARII 496



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 147/343 (42%), Gaps = 24/343 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +VKG V  V  FGA +    G+  L  +  MS   I  P +  KVG E+   V+ V  
Sbjct: 182 GDLVKGVVKNVTDFGAFIDL-DGIDGLIHITDMSWGRINHPSEILKVGQEIEVVVIDVDR 240

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           + +R+++  K+        I   Y   T      G +  +  +G F+    G++G    S
Sbjct: 241 EKERVSLGLKQKTPNPWENIEEKYPVGTK---VKGKVVNLAPYGAFIELEPGIEGLVHIS 297

Query: 617 ELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD----LVKLGS 671
           E+       +PS +  +GQ V+  ++    A ++++LS  +K   V+  D    L   G+
Sbjct: 298 EISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSLS--LKALEVNPWDKASELYPPGT 355

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHATVMKSVIKPGYEFD-QLL 728
           +V G V   +  A   Y+  +    G I    L+    + H +    V+K G E + ++L
Sbjct: 356 IVKGKVKNFS--AYGAYIELENALDGFIHVNDLSWTRKINHPS---EVLKKGEEIEAKVL 410

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D  +  +LL  K    +  +++           +V G V  I   G F++    + G 
Sbjct: 411 EIDKTNQKILLGIKQLTEDPWKEI---EKKYKVGEIVSGKVSKIASFGAFIQLADEIDGL 467

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              S+    + A +     VGQ V + I+ ++ E  RI LS+K
Sbjct: 468 VHISQISADRVAKVKDVLKVGQEVSARIIKIDKEERRIGLSIK 510



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 107/476 (22%), Positives = 201/476 (42%), Gaps = 75/476 (15%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D   G +VKGKV+  +S   +V      + + PL    E E ++ G++     E++   L
Sbjct: 11  DFVEGSIVKGKVVDKNSKEVVVDIGYKSEGIIPLSEFEEPESIQVGQEI----EVLLESL 66

Query: 555 GVKSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
             +   + ++ +K   K     IL ++ E     IT G + ++ K G  +    GV+ F 
Sbjct: 67  ENEEGMVVLSRQKAAQKQNWDKILKTFEEGG--TIT-GKVKQVVKGGLMLNI--GVEAFL 121

Query: 614 PRSELGLDPGCEPSSMY-HVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 666
           P S++ + P   P ++  + G  + C+I+       ++  SRR  +       R+   + 
Sbjct: 122 PASQIDVVP---PKNLKEYEGATLTCKIVKISEERKNVVLSRREIVEAERNQKRLQFLEK 178

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           V +G LV GVV  VT      ++   G       T+     + H +    ++K G E + 
Sbjct: 179 VHVGDLVKGVVKNVTDFG--AFIDLDGIDGLIHITDMSWGRINHPS---EILKVGQEIEV 233

Query: 727 LLV-LDNESSNLLLSAKYSLINSAQQLPSDASHI---HP-NSVVHGYVCNIIETGCFVRF 781
           +++ +D E   + L  K       Q+ P+   +I   +P  + V G V N+   G F+  
Sbjct: 234 VVIDVDREKERVSLGLK-------QKTPNPWENIEEKYPVGTKVKGKVVNLAPYGAFIEL 286

Query: 782 LGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
              + G    S+    Q+    S+   +GQ V + +LD+N    +++LSLK    +  D 
Sbjct: 287 EPGIEGLVHISEISWTQKITKPSEVLSMGQEVEAMVLDINKAEQKLSLSLKALEVNPWDK 346

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
           +                      SEL     +  G++++GKV   + +G  +  E   D 
Sbjct: 347 A----------------------SEL-----YPPGTIVKGKVKNFSAYGAYIELENALD- 378

Query: 901 YGFITHHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
            GFI  + L+           ++ G  I+A +L++ K  + + L +K +  D ++E
Sbjct: 379 -GFIHVNDLSWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKILLGIKQLTEDPWKE 433



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 105/496 (21%), Positives = 193/496 (38%), Gaps = 61/496 (12%)

Query: 184 PTIFHVGQLVSCIVLQLDDD-------KKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVL 236
           P    VGQ +  ++  L+++       +++  +++ W  +          L+T +EG  +
Sbjct: 50  PESIQVGQEIEVLLESLENEEGMVVLSRQKAAQKQNWDKI----------LKTFEEGGTI 99

Query: 237 TAYVKSIEDHGYILHFGLPSF-----TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTR 291
           T  VK +   G +L+ G+ +F        +P  NL E  G        L   +  I   R
Sbjct: 100 TGKVKQVVKGGLMLNIGVEAFLPASQIDVVPPKNLKEYEG------ATLTCKIVKISEER 153

Query: 292 KVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDI 351
           K V LS      ++   K L+       +  + V   V+ +++N           G   +
Sbjct: 154 KNVVLSRREIVEAERNQKRLQ------FLEKVHVGDLVKGVVKNVTDFGAFIDLDGIDGL 207

Query: 352 FHLQN-TFPTTNWKNDYNQ-HKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSH 404
            H+ + ++   N  ++  +  +++   ++ VD     V L L     NP+       P  
Sbjct: 208 IHITDMSWGRINHPSEILKVGQEIEVVVIDVDREKERVSLGLKQKTPNPWENIEEKYPVG 267

Query: 405 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCV 463
            KV     + KVV +    G  +++          V IS+++  +++ K  +    G  V
Sbjct: 268 TKV-----KGKVVNL-APYGAFIELEP---GIEGLVHISEISWTQKITKPSEVLSMGQEV 318

Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
              +L     E   +  LKA              PG +VKGKV    ++GA ++    + 
Sbjct: 319 EAMVLDINKAEQKLSLSLKALEVNPWDKASELYPPGTIVKGKVKNFSAYGAYIELENALD 378

Query: 524 ALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE 582
               +  +S   +I  P +  K G E+  +VL      I  T++K L+  K      + E
Sbjct: 379 GFIHVNDLSWTRKINHPSEVLKKGEEIEAKVL-----EIDKTNQKILLGIKQLTEDPWKE 433

Query: 583 ATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638
              +     I  G ++KI   G F++  + + G    S++  D   +   +  VGQ V  
Sbjct: 434 IEKKYKVGEIVSGKVSKIASFGAFIQLADEIDGLVHISQISADRVAKVKDVLKVGQEVSA 493

Query: 639 RIMSSIPASRRINLSF 654
           RI+      RRI LS 
Sbjct: 494 RIIKIDKEERRIGLSI 509



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 125/577 (21%), Positives = 233/577 (40%), Gaps = 87/577 (15%)

Query: 872  FIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA-TVESGSVIQAAILDVAKA 930
            F+ GS+++GKV + N   VVV     S+  G I   +     +++ G  I+  +  +   
Sbjct: 12   FVEGSIVKGKVVDKNSKEVVVDIGYKSE--GIIPLSEFEEPESIQVGQEIEVLLESLENE 69

Query: 931  ERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 990
            E +V L              S ++A +K+   +  K      T+   V+ V +  L+L  
Sbjct: 70   EGMVVL--------------SRQKAAQKQNWDKILKTFEEGGTITGKVKQVVKGGLML-- 113

Query: 991  PEYNHSIGY-ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETET 1049
                 +IG  A +        P K     +    T   +  S     ++L  + I E E 
Sbjct: 114  -----NIGVEAFLPASQIDVVPPKNLKEYEGATLTCKIVKISEERKNVVLSRREIVEAE- 167

Query: 1050 SSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 1109
             + KR +      VG LV+  +  +      +    G  G IHIT+++  + N    +  
Sbjct: 168  RNQKRLQFLEKVHVGDLVKGVVKNVTDFGAFIDLD-GIDGLIHITDMSWGRINHPSEI-- 224

Query: 1110 NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFE--ECDVSIGQRV 1167
              K+GQ +   +I    + +     L + +  P             +E  E    +G +V
Sbjct: 225  -LKVGQEIEVVVIDVDREKERVSLGLKQKTPNP-------------WENIEEKYPVGTKV 270

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHIGKAVTGHVLS 1222
             G V  +    A + +   ++  + I + ++     +PSE+        +G+ V   VL 
Sbjct: 271  KGKVVNLAPYGAFIELEPGIEGLVHISEISWTQKITKPSEV------LSMGQEVEAMVLD 324

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
            INK ++ L L L+  +    DK  ++           G IV G++ K  S  G   +++ 
Sbjct: 325  INKAEQKLSLSLKALEVNPWDKASELYPP--------GTIVKGKV-KNFSAYGAY-IELE 374

Query: 1283 PHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1341
              L G +H  +L     ++ P     +G+ ++ KVLEI +T +      L ++       
Sbjct: 375  NALDGFIHVNDLSWTRKINHPSEVLKKGEEIEAKVLEIDKTNQKIL---LGIKQ------ 425

Query: 1342 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1401
                  L+ D   P K +EK        IV G V  + S G FI L+ ++D  V +S +S
Sbjct: 426  ------LTED---PWKEIEK--KYKVGEIVSGKVSKIASFGAFIQLADEIDGLVHISQIS 474

Query: 1402 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
               V   +    +G+ V+ R++ ++   +R+ +++K 
Sbjct: 475  ADRVAKVKDVLKVGQEVSARIIKIDKEERRIGLSIKA 511


>gi|386867152|ref|YP_006280146.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. animalis
            ATCC 25527]
 gi|385701235|gb|AFI63183.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. animalis
            ATCC 25527]
          Length = 493

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 171/369 (46%), Gaps = 41/369 (11%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G V KVD++  LL I    +  +     + E S  ++      +    T   L +
Sbjct: 36   GDLVEGTVVKVDHDEVLLDIGYKTEGVI----PSRELSIKKDVDPDDVVKVGDTIEALVV 91

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIG 1282
             KE K  RL+L   +        DI        I E D +V G + + + G  GL+V IG
Sbjct: 92   TKEDKEGRLILSKKRAQYERAWGDIEK------IKEDDGVVEGTVIEAVKG--GLIVDIG 143

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
               +      E++ +    P  G    Q +K KVLE+ +      +V LS R  L+   S
Sbjct: 144  LRGFLPASLVEMRRVRDLSPYIG----QKIKAKVLELDKNRN---NVVLSRRQYLEETQS 196

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
                               +  L    I +G V ++ + G F+ L   +D  + +S LS 
Sbjct: 197  EVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSW 242

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIV 1461
             +++ P +   +G  V   VL V+   +R+ ++LK +      +      +  HV G IV
Sbjct: 243  KHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQIV 297

Query: 1462 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
             G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++R
Sbjct: 298  RGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDRR 356

Query: 1522 RISLGMKSS 1530
            RISL +K +
Sbjct: 357  RISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 125/288 (43%), Gaps = 23/288 (7%)

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDIEKIKE--DDGVVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + +    + S   ++GQ +K +++      +++  SRR  L       R +    +K G
Sbjct: 152 LVEMRRVRDLSP--YIGQKIKAKVLELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKG 209

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G I    L+  H++H +    V+K G +   ++L
Sbjct: 210 QIREGVVSSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVEVL 263

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G F+     + G 
Sbjct: 264 DVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVRGKVTKIVQFGVFISVEDGIEGL 320

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
              S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S
Sbjct: 321 VHISELANRHVENPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDS 368



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 114/259 (44%), Gaps = 37/259 (14%)

Query: 1197 AYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             + P+ L E +R      +IG+ +   VL ++K +  + L  R + +       +  ++ 
Sbjct: 146  GFLPASLVEMRRVRDLSPYIGQKIKAKVLELDKNRNNVVLSRRQYLE-------ETQSEV 198

Query: 1253 MQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
             +TF+ +   G I  G +S I++   G  V +G  + G +H +EL    +  P      G
Sbjct: 199  RETFLSQLKKGQIREGVVSSIVNF--GAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVG 255

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
              V  +VL++         + LSL+++ +                P +   +     P  
Sbjct: 256  DKVTVEVLDVDLDRE---RISLSLKATQE---------------DPWQRFARTH--VPGQ 295

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            IV+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+   
Sbjct: 296  IVRGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFVKVIDVDLDR 355

Query: 1430 KRVEVTLKTSDSRTASQSE 1448
            +R+ ++LK ++      SE
Sbjct: 356  RRISLSLKQANDSVDPNSE 374



 Score = 45.8 bits (107), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 147/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDDVVKVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEDDGVVEGTVIEAVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  +  +   IK      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--SPYIGQKIKA-----KVLELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G V +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK +        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAA 923
             + G ++ GKV +   FGV +S E+   + G +   +LA   VE+       G  +   
Sbjct: 292 --VPGQIVRGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVENPETVVKPGEEVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363


>gi|384135335|ref|YP_005518049.1| RNA binding S1 domain-containing protein [Alicyclobacillus
            acidocaldarius subsp. acidocaldarius Tc-4-1]
 gi|339289420|gb|AEJ43530.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius subsp.
            acidocaldarius Tc-4-1]
          Length = 392

 Score = 99.0 bits (245), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 166/386 (43%), Gaps = 57/386 (14%)

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISR----HLKAQLFILDSAYEPSELQEFQRRF 1210
            +  +  V  G  VTG V  VD+    + +      H+  Q         PS++       
Sbjct: 15   MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDV------V 68

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
             +G  VT  VL ++ E   + L  R  +   +        + MQ  +  G+ +   I  +
Sbjct: 69   SVGSTVTAQVLKVDMESGHVTLSKRRAEQASA-------WERMQRLLESGEPIEVEIRDV 121

Query: 1271 LSGVGGLVVQIG-----PHLYGRVHFTE-LKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
            + G  GLV  +G     P      HF E L+            +GQ ++ KV+E+     
Sbjct: 122  VKG--GLVADVGVRAFIPASLVDRHFVENLEQF----------KGQKLRAKVIEVDPQKN 169

Query: 1325 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1384
                  LS R+ L+  S   +  L              E+L P  +++G V+ +T  G F
Sbjct: 170  KLI---LSRRAVLEEESEARARKL-------------FEELKPGDVIEGTVQRLTDFGAF 213

Query: 1385 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1444
            + +    D  V +S LS  +V  P +    G  V  RVL V+P + R+ +++K +     
Sbjct: 214  VDVG-GADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAA----L 268

Query: 1445 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
             +           GD+V G ++RV  +G F+ +    L GL HVS++S + VD    + +
Sbjct: 269  PEPWETYAHEFQPGDVVQGVVRRVLDFGAFVEL-RPGLEGLVHVSQISNERVDKPSDVLQ 327

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G++V V++L VD E++RISL M+ S
Sbjct: 328  PGQEVTVRVLSVDPERKRISLSMRDS 353



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 147/359 (40%), Gaps = 33/359 (9%)

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           + T + V+ G VV G+V AVD  G  V  P G +       +S      P     VG+ +
Sbjct: 15  MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTV 74

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVR 604
             +VL V  +   VT  K     + A  +S  E   RL+  G   ++E     K G    
Sbjct: 75  TAQVLKVDMESGHVTLSK-----RRAEQASAWERMQRLLESGEPIEVEIRDVVKGGLVAD 129

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
              GV+ F P S +  D     +     GQ ++ +++   P   ++ LS        SE 
Sbjct: 130 V--GVRAFIPASLV--DRHFVENLEQFKGQKLRAKVIEVDPQKNKLILSRRAVLEEESEA 185

Query: 665 DLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 717
              KL      G ++ G V  +T     V V   G + G +    L+  H+ H +    V
Sbjct: 186 RARKLFEELKPGDVIEGTVQRLTDFGAFVDV---GGADGLVHISELSFSHVNHPS---EV 239

Query: 718 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
           ++ G     ++L +D E+  + LS K +L    +     A    P  VV G V  +++ G
Sbjct: 240 VREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETY---AHEFQPGDVVQGVVRRVLDFG 296

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            FV     L G    S+ +  +R D  S     GQ V   +L V+ E  RI+LS++ S 
Sbjct: 297 AFVELRPGLEGLVHVSQ-ISNERVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSS 354



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 156/379 (41%), Gaps = 52/379 (13%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII- 1122
            G +V  E+T +    + +    G+ G I   E++        ++ S   +G TVTA+++ 
Sbjct: 24   GDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVS---VGSTVTAQVLK 80

Query: 1123 --AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
               +S    + K    + S    M  + E G  +  E  DV  G  V     +     +L
Sbjct: 81   VDMESGHVTLSKRRAEQASAWERMQRLLESGEPIEVEIRDVVKGGLVADVGVRAFIPASL 140

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
              + RH     F+         L++F+     G+ +   V+ ++ +K  L L  R     
Sbjct: 141  --VDRH-----FV-------ENLEQFK-----GQKLRAKVIEVDPQKNKLILSRR----A 177

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
            + ++  +     +   +  GD++ G + ++     G  V +G    G VH +EL    V+
Sbjct: 178  VLEEESEARARKLFEELKPGDVIEGTVQRLTDF--GAFVDVG-GADGLVHISELSFSHVN 234

Query: 1301 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1360
             P     EG  VK +VL +         + LS++++L     T +               
Sbjct: 235  HPSEVVREGDRVKVRVLRVDPE---AGRISLSIKAALPEPWETYA--------------- 276

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
               +  P  +VQG V+ V   G F+ L   L+  V +S +S+  V+ P      G+ V  
Sbjct: 277  --HEFQPGDVVQGVVRRVLDFGAFVELRPGLEGLVHVSQISNERVDKPSDVLQPGQEVTV 334

Query: 1421 RVLSVEPLSKRVEVTLKTS 1439
            RVLSV+P  KR+ ++++ S
Sbjct: 335  RVLSVDPERKRISLSMRDS 353



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 154/363 (42%), Gaps = 36/363 (9%)

Query: 221 LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGID----VK 275
           L + L+   V+EG V+T  V +++DHG  +   LP  + G +    L+   G      V 
Sbjct: 12  LREMLTDAAVREGDVVTGEVTAVDDHGVTV--ALPHGYEGHISPQELSAVPGTHPSDVVS 69

Query: 276 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
            G  +   V  +D     V LS      +    +  +     LL  G  +   ++ +++ 
Sbjct: 70  VGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQR-----LLESGEPIEVEIRDVVKG 124

Query: 336 GVM--LSFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
           G++  +    +   + VD   ++N         +  + +K+ A+++ VDP    + L+  
Sbjct: 125 GLVADVGVRAFIPASLVDRHFVENL--------EQFKGQKLRAKVIEVDPQKNKLILSRR 176

Query: 393 PYL-----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
             L        R     +K GD+ + +     D   G  +D+          V IS+++ 
Sbjct: 177 AVLEEESEARARKLFEELKPGDVIEGTVQRLTD--FGAFVDVGGAD----GLVHISELSF 230

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
             V    +  +EG  V+VR+L      G  +  +KA+  E       + +PG VV+G V 
Sbjct: 231 SHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVR 290

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 565
            V  FGA V+   G++ L  +  +S   + KP    + G E+  RVL V  + KRI+++ 
Sbjct: 291 RVLDFGAFVELRPGLEGLVHVSQISNERVDKPSDVLQPGQEVTVRVLSVDPERKRISLSM 350

Query: 566 KKT 568
           + +
Sbjct: 351 RDS 353


>gi|206896344|ref|YP_002247530.1| 30S ribosomal protein S1 [Coprothermobacter proteolyticus DSM 5265]
 gi|206738961|gb|ACI18039.1| ribosomal protein S1 [Coprothermobacter proteolyticus DSM 5265]
          Length = 559

 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 135/567 (23%), Positives = 235/567 (41%), Gaps = 71/567 (12%)

Query: 424 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEG---SCVRVRILGFRHLEGLATGI 480
           GL LDI S      A++ + +   E    L ++ +EG   + V V +      +G  +  
Sbjct: 34  GLWLDIAS---KYDAFLPLDECTSE----LARQVQEGNVPTSVEVVVTRTNDDKGYISVS 86

Query: 481 LKASAFEGLVFTHSDV----KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
            K +A+  L     DV    K G   K K +  D  G  V    G+    P   + E   
Sbjct: 87  QKRAAYRKL---WKDVEEWEKSGESRKVKAVGADDKGVFVDLGAGILGYVPASQL-EIRF 142

Query: 537 VKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVK-SKLAILSSYAEATDRLITHGWI 593
           V+  KK+ VG  L  ++L V  KR  I +T ++ L +  K     ++    D  I  G +
Sbjct: 143 VRDTKKY-VGRSLRVKILRVNRKRNQIILTQRQVLEEEQKERAEKAWLRLKDSDIVRGHV 201

Query: 594 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           ++I   G FV   +G++GF P+ EL   P    + ++  G VV+ +++S     + + LS
Sbjct: 202 SRITDEGIFVDLGDGIEGFVPKDELDWRPIKNIAKVFRRGDVVRAKVLSVDEEKKEMVLS 261

Query: 654 FMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
             +    P ++  +    +G +VSG V       +++ V       G +P + ++   + 
Sbjct: 262 IRLATPNPWQLFAEKH-NVGDVVSGRVLRYLRGGLLLLV---DRVTGLVPAQEVS--WKR 315

Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
              ++ + K G     ++L  D E+ +L+LS K +L +  + +  D       S   G V
Sbjct: 316 GAKVEDLYKIGDHVKAKILRFDPEAQDLILSVKEALGDPWENVERD---FPVGSKAEGTV 372

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
            NI + G FV     + G  PR      +  D+++   +G  V   +L +N    +ITLS
Sbjct: 373 VNITDFGVFVELAPGIEGLVPRRYVSWKRFKDINEVVNIGDQVEVVVLGINIVDRKITLS 432

Query: 830 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
           ++ +                EE +  +Q                 G ++ GKV      G
Sbjct: 433 MRDTRPDP-----------WEEVVKNIQP----------------GQLVRGKVVTIIPQG 465

Query: 890 VVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVF 942
           V V   +   V GFI   QL+          V  G  I A ++ + +  R + LS+K + 
Sbjct: 466 VFVEIADG--VEGFIHISQLSIRRVDDPRDAVSEGDEIVAKVIGIDEERRRISLSVKAIH 523

Query: 943 IDRFREANSNRQAQKKKRKREASKDLG 969
           +D+ RE   +  +Q+ + K   S  LG
Sbjct: 524 VDKEREELQDFLSQQGEDKFTLSDVLG 550



 Score = 70.9 bits (172), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 164/378 (43%), Gaps = 46/378 (12%)

Query: 1167 VTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKE 1226
            V G+V ++ +E   + +   ++   F+     +   ++   + F  G  V   VLS+++E
Sbjct: 197  VRGHVSRITDEGIFVDLGDGIEG--FVPKDELDWRPIKNIAKVFRRGDVVRAKVLSVDEE 254

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE----GDIVGGRISKILSGVGGLVVQIG 1282
            KK + L +R            ++  N      E    GD+V GR+ + L G   L+V   
Sbjct: 255  KKEMVLSIR------------LATPNPWQLFAEKHNVGDVVSGRVLRYLRGGLLLLVDRV 302

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
              L      +  +   V D    Y  G  VK K+L      +      LS++ +L     
Sbjct: 303  TGLVPAQEVSWKRGAKVEDL---YKIGDHVKAKILRFDPEAQDLI---LSVKEALG---- 352

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
                        P +++E+  D       +G V N+T  G F+ L+  ++  V    +S 
Sbjct: 353  -----------DPWENVER--DFPVGSKAEGTVVNITDFGVFVELAPGIEGLVPRRYVSW 399

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1462
               +   +   IG  V   VL +  + +++  TL   D+R     E+  + N+  G +V 
Sbjct: 400  KRFKDINEVVNIGDQVEVVVLGINIVDRKI--TLSMRDTRPDPWEEV--VKNIQPGQLVR 455

Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            G++  +   G+F+ I +  + G  H+S+LS   VD+       G+++  K++ +D+E+RR
Sbjct: 456  GKVVTIIPQGVFVEIAD-GVEGFIHISQLSIRRVDDPRDAVSEGDEIVAKVIGIDEERRR 514

Query: 1523 ISLGMKSSYFKNDADNLQ 1540
            ISL +K+ +   + + LQ
Sbjct: 515  ISLSVKAIHVDKEREELQ 532



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 137/344 (39%), Gaps = 35/344 (10%)

Query: 324 MVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPT 383
           +V   V  I + G+ +       G V    L +  P  N    + +   V A++L VD  
Sbjct: 196 IVRGHVSRITDEGIFVDLGDGIEGFVPKDEL-DWRPIKNIAKVFRRGDVVRAKVLSVDEE 254

Query: 384 SRAVGLTL-----NPYLL----HNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPV 434
            + + L++     NP+ L    HN       +V        ++ VDR  GL   +P+  V
Sbjct: 255 KKEMVLSIRLATPNPWQLFAEKHNVGDVVSGRVLRYLRGGLLLLVDRVTGL---VPAQEV 311

Query: 435 STPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGILKA--SAFEGLVF 491
           S      + D+           YK G  V+ +IL F    + L   + +A    +E +  
Sbjct: 312 SWKRGAKVEDL-----------YKIGDHVKAKILRFDPEAQDLILSVKEALGDPWENV-- 358

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
              D   G   +G V+ +  FG  V+   G++ L P  ++S        +   +G ++  
Sbjct: 359 -ERDFPVGSKAEGTVVNITDFGVFVELAPGIEGLVPRRYVSWKRFKDINEVVNIGDQVEV 417

Query: 552 RVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VLG+    ++IT++ + T       ++ +        +  G +  I   G FV   +GV
Sbjct: 418 VVLGINIVDRKITLSMRDTRPDPWEEVVKNIQPGQ---LVRGKVVTIIPQGVFVEIADGV 474

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           +GF   S+L +    +P      G  +  +++      RRI+LS
Sbjct: 475 EGFIHISQLSIRRVDDPRDAVSEGDEIVAKVIGIDEERRRISLS 518



 Score = 42.7 bits (99), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 154/380 (40%), Gaps = 62/380 (16%)

Query: 200 LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTG 259
           L++++KE  + K WL L+ S + +G              +V  I D G  +  G     G
Sbjct: 176 LEEEQKERAE-KAWLRLKDSDIVRG--------------HVSRITDEGIFVDLG-DGIEG 219

Query: 260 FLPRNNL----AENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGIS 315
           F+P++ L     +N     + G +++  V S+D  +K + LS       +  T +   + 
Sbjct: 220 FVPKDELDWRPIKNIAKVFRRGDVVRAKVLSVDEEKKEMVLSI------RLATPNPWQLF 273

Query: 316 IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKND------YNQ 369
            +    G +VS RV   L    +L  +   TG V            +WK        Y  
Sbjct: 274 AEKHNVGDVVSGRVLRYLRG-GLLLLVDRVTGLV-------PAQEVSWKRGAKVEDLYKI 325

Query: 370 HKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPSHVK----VGDIYDQSKVVRVD 420
              V A+IL  DP ++ + L++     +P+    R  P   K    V +I D    V + 
Sbjct: 326 GDHVKAKILRFDPEAQDLILSVKEALGDPWENVERDFPVGSKAEGTVVNITDFGVFVELA 385

Query: 421 RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI 480
            G+  L  +P   VS   +  I++V              G  V V +LG   ++   T  
Sbjct: 386 PGIEGL--VPRRYVSWKRFKDINEVV-----------NIGDQVEVVVLGINIVDRKITLS 432

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
           ++ +  +       +++PG +V+GKV+ +   G  V+   GV+    +  +S   +  P 
Sbjct: 433 MRDTRPDPWEEVVKNIQPGQLVRGKVVTIIPQGVFVEIADGVEGFIHISQLSIRRVDDPR 492

Query: 541 KKFKVGAELVFRVLGVKSKR 560
                G E+V +V+G+  +R
Sbjct: 493 DAVSEGDEIVAKVIGIDEER 512


>gi|294790747|ref|ZP_06755905.1| ribosomal protein S1 [Scardovia inopinata F0304]
 gi|294458644|gb|EFG26997.1| ribosomal protein S1 [Scardovia inopinata F0304]
          Length = 494

 Score = 98.6 bits (244), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V K+D +  LL I       + ++   +    +P ++        +G  +   
Sbjct: 36   GDLVEGTVVKIDRDEVLLDIGYKTEGVIPSKELSIKKDVDPEDV------VQVGDTI--E 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1278
             L + KE K  RL+L   +        D+        I E D +V G + + + G  GL+
Sbjct: 88   ALVVTKEDKDGRLILSKKRAQYERAWGDVEK------IKEADGVVEGTVIETVKG--GLI 139

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V IG   +      E++ +    P  G    Q ++ K+LE+ +      +V LS R  L+
Sbjct: 140  VDIGLRGFLPASLVEMRRVRDLAPYIG----QRIQAKILELDKNRN---NVVLSRRQYLE 192

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
               S                   +  L    I +G + ++ + G F+ L   +D  + +S
Sbjct: 193  ETQSEVRETF-------------LSQLKKGQIREGTISSIVNFGAFVDLG-GVDGLIHVS 238

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV- 1457
             LS  +++ P +   +G  V   VL V+   +R+ ++LK++      +      +  HV 
Sbjct: 239  ELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKST-----QEDPWQRFARTHVP 293

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G IV G++ ++  +G+F+++++  + GL H+SEL+  HVDN ET+ + GE+V VK++ VD
Sbjct: 294  GQIVKGKVTKIVQFGVFVSVDD-GIEGLIHISELANRHVDNPETVVKPGEEVFVKVIDVD 352

Query: 1518 KEKRRISLGMKSS 1530
             ++RRISL +K +
Sbjct: 353  LDRRRISLSLKQA 365



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G + +G + ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGTISSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI+++ K T          ++       I  G +TKI + G FV   +G++G
Sbjct: 263 LDVDLDRERISLSLKSTQEDPWQRFARTHVPGQ---IVKGKVTKIVQFGVFVSVDDGIEG 319

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LIHISELANRHVDNPETVVKPGEEVFVKVIDVDLDRRRISLSL 362



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 148/376 (39%), Gaps = 48/376 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI++    +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDRDEVLLDIGYKTEGVIPSKELSIKKDVDPEDVVQVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            ++  +++      R+ LS        +  D+ K+     +V G V       ++V +  
Sbjct: 85  TIEALVVTKEDKDGRLILSKKRAQYERAWGDVEKIKEADGVVEGTVIETVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ 751
           +G+   ++        L  A  +   I+      ++L LD   +N++LS +  L  +  +
Sbjct: 145 RGFLPASLVEMRRVRDL--APYIGQRIQA-----KILELDKNRNNVVLSRRQYLEETQSE 197

Query: 752 L-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
           +  +  S +    +  G + +I+  G FV  LG + G    S+         S+   VG 
Sbjct: 198 VRETFLSQLKKGQIREGTISSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGD 256

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +LDV+ +  RI+LSLK S        F + H                        
Sbjct: 257 KVTVEVLDVDLDRERISLSLK-STQEDPWQRFARTH------------------------ 291

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG-------ATVESGSVIQAA 923
             + G +++GKV +   FGV VS ++   + G I   +LA          V+ G  +   
Sbjct: 292 --VPGQIVKGKVTKIVQFGVFVSVDDG--IEGLIHISELANRHVDNPETVVKPGEEVFVK 347

Query: 924 ILDVAKAERLVDLSLK 939
           ++DV    R + LSLK
Sbjct: 348 VIDVDLDRRRISLSLK 363



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 149/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P    +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDRDEVLLDIGYKTEGVIPSKELSIKKDVDPEDVVQVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGDVEKIKEADG--VVEGTVIETVKGGLIVDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    +K
Sbjct: 152 LVEMRRVRDLAP----YIGQRIQAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLK 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  G +  +      V +   G   G I    L+  H++H +    V+K G +   +
Sbjct: 208 KGQIREGTISSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G FV     + 
Sbjct: 262 VLDVDLDRERISLSLKSTQEDPWQRFAR--THV-PGQIVKGKVTKIVQFGVFVSVDDGIE 318

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +    +       G+ V   ++DV+ +  RI+LSLKQ+  S
Sbjct: 319 GLIHISELANRHVDNPETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDS 368



 Score = 48.1 bits (113), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 170/401 (42%), Gaps = 70/401 (17%)

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTA 1119
            ++D G LV+  + +I   E+ L  G    G I   E++  K    E++    ++G T+ A
Sbjct: 32   NFDDGDLVEGTVVKIDRDEVLLDIGYKTEGVIPSKELSIKKDVDPEDVV---QVGDTIEA 88

Query: 1120 RIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
             ++ K +K                 L +S+  ++           +R  G V K+     
Sbjct: 89   LVVTKEDKD--------------GRLILSKKRAQY----------ERAWGDVEKIKEADG 124

Query: 1180 LL--TISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLL 1230
            ++  T+   +K  L I+D     + P+ L E +R      +IG+ +   +L ++K +  +
Sbjct: 125  VVEGTVIETVKGGL-IVDIGLRGFLPASLVEMRRVRDLAPYIGQRIQAKILELDKNRNNV 183

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYG 1287
             L  R + +       +  ++  +TF+ +   G I  G IS I++   G  V +G  + G
Sbjct: 184  VLSRRQYLE-------ETQSEVRETFLSQLKKGQIREGTISSIVNF--GAFVDLG-GVDG 233

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1347
             +H +EL    +  P      G  V  +VL++         + LSL+S+ +         
Sbjct: 234  LIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRE---RISLSLKSTQE--------- 281

Query: 1348 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1407
                   P +   +     P  IV+G V  +   G F+ +   ++  + +S L++ +V++
Sbjct: 282  ------DPWQRFARTH--VPGQIVKGKVTKIVQFGVFVSVDDGIEGLIHISELANRHVDN 333

Query: 1408 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
            PE     G+ V  +V+ V+   +R+ ++LK ++      SE
Sbjct: 334  PETVVKPGEEVFVKVIDVDLDRRRISLSLKQANDSVDPTSE 374


>gi|283783083|ref|YP_003373837.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
 gi|283441435|gb|ADB13901.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
          Length = 500

 Score = 98.2 bits (243), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 171/369 (46%), Gaps = 41/369 (11%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G V K+D++  LL I    +  +     + E S  ++      +    T   L +
Sbjct: 36   GDLVEGTVVKIDHDEVLLDIGYKTEGVI----PSRELSIKKDVDPDDVVEVGDTIEALVV 91

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIG 1282
             KE K  RL+L   +        DI        I + D IV G + + + G  GL+V IG
Sbjct: 92   TKEDKEGRLILSKKRAQYERAWGDIEK------IKDADGIVEGTVIEAVKG--GLIVDIG 143

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
               +      E++ +    P  G    Q +K K+LE+ +      +V LS R  L+   S
Sbjct: 144  LRGFLPASLVEMRRVRDLSPYIG----QKIKAKILELDKNRN---NVVLSRRQFLEETQS 196

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
                               +  L    I +G V ++ + G F+ L   +D  + +S LS 
Sbjct: 197  EVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSW 242

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIV 1461
             +++ P +   +G  V   VL V+   +R+ ++LK +      +      +  HV G +V
Sbjct: 243  KHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVV 297

Query: 1462 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
             G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++R
Sbjct: 298  KGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRR 356

Query: 1522 RISLGMKSS 1530
            RISL +K +
Sbjct: 357  RISLSLKQA 365



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI+++ K T          ++       +  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---VVKGKVTKIVQFGVFISVEDGIEG 319

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSL 362



 Score = 49.3 bits (116), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 113/255 (44%), Gaps = 21/255 (8%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 641
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 702 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
            P  VV G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDV 351

Query: 820 NSETGRITLSLKQSC 834
           + +  RI+LSLKQ+ 
Sbjct: 352 DLDRRRISLSLKQAT 366



 Score = 45.4 bits (106), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 113/259 (43%), Gaps = 37/259 (14%)

Query: 1197 AYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             + P+ L E +R      +IG+ +   +L ++K +  + L  R F +       +  ++ 
Sbjct: 146  GFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLE-------ETQSEV 198

Query: 1253 MQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
             +TF+ +   G I  G +S I++   G  V +G  + G +H +EL    +  P      G
Sbjct: 199  RETFLSQLKKGQIREGVVSSIVNF--GAFVDLGG-VDGLIHVSELSWKHIDHPSEVVKVG 255

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
              V  +VL++         + LSL+++ +                P +   +     P  
Sbjct: 256  DKVTVEVLDVDLDRE---RISLSLKATQE---------------DPWQRFARTH--VPGQ 295

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +V+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+   
Sbjct: 296  VVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDR 355

Query: 1430 KRVEVTLKTSDSRTASQSE 1448
            +R+ ++LK +       SE
Sbjct: 356  RRISLSLKQATEAVDPNSE 374



 Score = 45.1 bits (105), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 905 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
              +LA   VE+       G  +   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 425
           +K+ A+IL +D     V L+   +L   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 482
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
              ++    TH    PG VVKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 543 FKVGAELVFRVLGV--KSKRITVTHKKT 568
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKGGEEVFVKVIDVDLDRRRISLSLKQA 365


>gi|283458186|ref|YP_003362803.1| 30S ribosomal protein S1 [Rothia mucilaginosa DY-18]
 gi|283134218|dbj|BAI64983.1| ribosomal protein S1 [Rothia mucilaginosa DY-18]
          Length = 484

 Score = 98.2 bits (243), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 191/405 (47%), Gaps = 55/405 (13%)

Query: 1138 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1187
            +S     + +++IG +  F E  + +I     G  V+G V K+D++  LL I       +
Sbjct: 1    MSTNIPQVAINDIGDEQAFLEAVEQTIKVFNDGDLVSGQVVKIDHDEVLLDIGYKTEGVI 60

Query: 1188 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1247
             ++   +    +PSE+ E      +G  V   VL+  KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDIDPSEVVE------LGSEVEALVLT--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1248 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            I        + E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------VKENDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
               Q ++ K++E+ +      +V LS R+ L+   S   S               + +L 
Sbjct: 164  ---QQIEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSSF-------------LNELE 204

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
               + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+
Sbjct: 205  KGQVREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVD 263

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGL 1485
               +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E+  + GL
Sbjct: 264  LDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVED-GIEGL 317

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             H+SEL+  HVD  E +   GE+V VKI+ +D ++RRISL +K +
Sbjct: 318  VHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   V
Sbjct: 201 NELEKGQVREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEV 259

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G
Sbjct: 260 LEVDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEG 316

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL          +  VG+ V  +I+      RRI+LS 
Sbjct: 317 LVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSL 359



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 157/350 (44%), Gaps = 35/350 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G+V+ +D    ++      + + P   +S    + P +  ++G+E+   VL  + 
Sbjct: 33  GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVELGSEVEALVLTKED 92

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKVKE-NDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R S  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELE 204

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P    + L
Sbjct: 205 KGQVREGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQP-VTVEVL 260

Query: 728 LV-LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
            V LD E  +L L A        Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 261 EVDLDRERVSLSLKA-------TQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 785 LTGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+ +  +  DL+ +   VG+ V   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISE-LATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362


>gi|415720875|ref|ZP_11468119.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
 gi|415724199|ref|ZP_11469798.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
 gi|388061136|gb|EIK83793.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
 gi|388062890|gb|EIK85493.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
          Length = 501

 Score = 98.2 bits (243), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 171/369 (46%), Gaps = 41/369 (11%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G V K+D++  LL I    +  +     + E S  ++      +    T   L +
Sbjct: 36   GDLVEGTVVKIDHDEVLLDIGYKTEGVI----PSRELSIKKDVDPDDVVEVGDTIEALVV 91

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIG 1282
             KE K  RL+L   +        DI        I + D IV G + + + G  GL+V IG
Sbjct: 92   TKEDKEGRLILSKKRAQYERAWGDIEK------IKDADGIVEGTVIEAVKG--GLIVDIG 143

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
               +      E++ +    P  G    Q +K K+LE+ +      +V LS R  L+   S
Sbjct: 144  LRGFLPASLVEMRRVRDLSPYIG----QKIKAKILELDKNRN---NVVLSRRQFLEETQS 196

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
                               +  L    I +G V ++ + G F+ L   +D  + +S LS 
Sbjct: 197  EVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSW 242

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIV 1461
             +++ P +   +G  V   VL V+   +R+ ++LK +      +      +  HV G +V
Sbjct: 243  KHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVV 297

Query: 1462 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
             G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++R
Sbjct: 298  KGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRR 356

Query: 1522 RISLGMKSS 1530
            RISL +K +
Sbjct: 357  RISLSLKQA 365



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI+++ K T          ++       +  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---VVKGKVTKIVQFGVFISVEDGIEG 319

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 21/254 (8%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 641
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 702 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
            P  VV G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDV 351

Query: 820 NSETGRITLSLKQS 833
           + +  RI+LSLKQ+
Sbjct: 352 DLDRRRISLSLKQA 365



 Score = 46.6 bits (109), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 114/259 (44%), Gaps = 37/259 (14%)

Query: 1197 AYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             + P+ L E +R      +IG+ +   +L ++K +  + L  R F +       +  ++ 
Sbjct: 146  GFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLE-------ETQSEV 198

Query: 1253 MQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
             +TF+ +   G I  G +S I++   G  V +G  + G +H +EL    +  P      G
Sbjct: 199  RETFLSQLKKGQIREGVVSSIVNF--GAFVDLGG-VDGLIHVSELSWKHIDHPSEVVKVG 255

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
              V  +VL++         + LSL+++ +                P +   +     P  
Sbjct: 256  DKVTVEVLDVDLDRE---RISLSLKATQE---------------DPWQRFARTH--VPGQ 295

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +V+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+   
Sbjct: 296  VVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDR 355

Query: 1430 KRVEVTLKTSDSRTASQSE 1448
            +R+ ++LK ++      SE
Sbjct: 356  RRISLSLKQANEAVDPNSE 374



 Score = 45.1 bits (105), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 905 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
              +LA   VE+       G  +   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 425
           +K+ A+IL +D     V L+   +L   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 482
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
              ++    TH    PG VVKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 543 FKVGAELVFRVLGV--KSKRITVTHKKT 568
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKGGEEVFVKVIDVDLDRRRISLSLKQA 365


>gi|308235374|ref|ZP_07666111.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14018 = JCM
            11026]
 gi|311114868|ref|YP_003986089.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
 gi|385801539|ref|YP_005837942.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
 gi|415703249|ref|ZP_11459127.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
 gi|415705124|ref|ZP_11460395.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
 gi|415707058|ref|ZP_11461905.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
 gi|417556555|ref|ZP_12207612.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
 gi|310946362|gb|ADP39066.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
 gi|333392955|gb|AEF30873.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
 gi|333602243|gb|EGL13673.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
 gi|388051846|gb|EIK74870.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
 gi|388052709|gb|EIK75724.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
 gi|388054058|gb|EIK77003.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
          Length = 500

 Score = 98.2 bits (243), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 171/369 (46%), Gaps = 41/369 (11%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G V K+D++  LL I    +  +     + E S  ++      +    T   L +
Sbjct: 36   GDLVEGTVVKIDHDEVLLDIGYKTEGVI----PSRELSIKKDVDPDDVVEVGDTIEALVV 91

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIG 1282
             KE K  RL+L   +        DI        I + D IV G + + + G  GL+V IG
Sbjct: 92   TKEDKEGRLILSKKRAQYERAWGDIEK------IKDADGIVEGTVIEAVKG--GLIVDIG 143

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
               +      E++ +    P  G    Q +K K+LE+ +      +V LS R  L+   S
Sbjct: 144  LRGFLPASLVEMRRVRDLSPYIG----QKIKAKILELDKNRN---NVVLSRRQFLEETQS 196

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
                               +  L    I +G V ++ + G F+ L   +D  + +S LS 
Sbjct: 197  EVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSW 242

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIV 1461
             +++ P +   +G  V   VL V+   +R+ ++LK +      +      +  HV G +V
Sbjct: 243  KHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVV 297

Query: 1462 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
             G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++R
Sbjct: 298  KGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRR 356

Query: 1522 RISLGMKSS 1530
            RISL +K +
Sbjct: 357  RISLSLKQA 365



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI+++ K T          ++       +  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---VVKGKVTKIVQFGVFISVEDGIEG 319

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 21/254 (8%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 641
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 702 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
            P  VV G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDV 351

Query: 820 NSETGRITLSLKQS 833
           + +  RI+LSLKQ+
Sbjct: 352 DLDRRRISLSLKQA 365



 Score = 46.6 bits (109), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 114/259 (44%), Gaps = 37/259 (14%)

Query: 1197 AYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             + P+ L E +R      +IG+ +   +L ++K +  + L  R F +       +  ++ 
Sbjct: 146  GFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLE-------ETQSEV 198

Query: 1253 MQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
             +TF+ +   G I  G +S I++   G  V +G  + G +H +EL    +  P      G
Sbjct: 199  RETFLSQLKKGQIREGVVSSIVNF--GAFVDLGG-VDGLIHVSELSWKHIDHPSEVVKVG 255

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
              V  +VL++         + LSL+++ +                P +   +     P  
Sbjct: 256  DKVTVEVLDVDLDRE---RISLSLKATQE---------------DPWQRFARTH--VPGQ 295

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +V+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+   
Sbjct: 296  VVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDR 355

Query: 1430 KRVEVTLKTSDSRTASQSE 1448
            +R+ ++LK ++      SE
Sbjct: 356  RRISLSLKQANEAVDPNSE 374



 Score = 45.1 bits (105), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 905 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
              +LA   VE+       G  +   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 425
           +K+ A+IL +D     V L+   +L   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 482
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
              ++    TH    PG VVKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 543 FKVGAELVFRVLGV--KSKRITVTHKKT 568
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKGGEEVFVKVIDVDLDRRRISLSLKQA 365


>gi|337747030|ref|YP_004641192.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            KNP414]
 gi|379720890|ref|YP_005313021.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            3016]
 gi|386723496|ref|YP_006189822.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            K02]
 gi|336298219|gb|AEI41322.1| RNA binding S1 domain protein [Paenibacillus mucilaginosus KNP414]
 gi|378569562|gb|AFC29872.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            3016]
 gi|384090621|gb|AFH62057.1| RNA binding S1 domain-containing protein [Paenibacillus mucilaginosus
            K02]
          Length = 414

 Score = 98.2 bits (243), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 178/372 (47%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ-----RRFHIGKAVTG 1218
            G  V G V KVD + A + +        +  D      EL   Q     +   IG+ +  
Sbjct: 33   GDIVKGKVIKVDADQAFVDVG-------YKYDGVVPVKELSSVQVDDASQNVEIGQEIEL 85

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
             VL+I+  ++ L L  R   DG      + S D +   +    I+  ++++++ G  GLV
Sbjct: 86   KVLTIDDHREKLVLSKRAV-DG------EKSWDKLAADMENKTILEAKVAEVVKG--GLV 136

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V +G  L G V  + ++   V D  S Y +G+ ++ +V E+ R       V LS +  LD
Sbjct: 137  VDVG--LRGFVPASMVERTFVED-FSDY-KGRTLRLRVKEMDRE---KNKVILSQKDVLD 189

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
                          +  GK  E +  LS   ++ G V+ +T  G F+ +   +D  V +S
Sbjct: 190  E-------------EFEGKKKEVLAKLSVGQVLDGTVQRLTQFGAFVDIG-GVDGLVHIS 235

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1458
             ++  +VE P +    G  V  +VL V+P ++R+ +++K +      Q        ++ G
Sbjct: 236  EMAWHHVEKPSEVVKEGDKVQVQVLKVDPENERISLSIKATQPGPWQQV----AGRINTG 291

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
            DIV G +KR+  +G FI +    + GL H+S+++  HV   + + + GE+VKVK+L ++ 
Sbjct: 292  DIVTGTVKRLVQFGAFIEV-APGVEGLVHISQIAHRHVATPQEVLKEGEEVKVKVLDMNP 350

Query: 1519 EKRRISLGMKSS 1530
            +++RISL +K +
Sbjct: 351  DEKRISLSIKET 362



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 150/349 (42%), Gaps = 27/349 (7%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G +VKGKVI VD+  A V        + P+  +S  ++    +  ++G E+  +VL 
Sbjct: 30  IKKGDIVKGKVIKVDADQAFVDVGYKYDGVVPVKELSSVQVDDASQNVEIGQEIELKVLT 89

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           +   R  +   K  V  + +     A+  ++ I    + ++ K G  V    G++GF P 
Sbjct: 90  IDDHREKLVLSKRAVDGEKSWDKLAADMENKTILEAKVAEVVKGGLVVDV--GLRGFVPA 147

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPTRVSEDDLV 667
           S +      E  S Y  G+ ++ R+        ++ LS        F  K   V    L 
Sbjct: 148 S-MVERTFVEDFSDYK-GRTLRLRVKEMDREKNKVILSQKDVLDEEFEGKKKEV----LA 201

Query: 668 KL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
           KL  G ++ G V  +T     V +   G   G +    +A H  H      V+K G +  
Sbjct: 202 KLSVGQVLDGTVQRLTQFGAFVDI---GGVDGLVHISEMAWH--HVEKPSEVVKEGDKVQ 256

Query: 726 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            Q+L +D E+  + LS K +     QQ+   A  I+   +V G V  +++ G F+     
Sbjct: 257 VQVLKVDPENERISLSIKATQPGPWQQV---AGRINTGDIVTGTVKRLVQFGAFIEVAPG 313

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+      A   +    G+ V+  +LD+N +  RI+LS+K++
Sbjct: 314 VEGLVHISQIAHRHVATPQEVLKEGEEVKVKVLDMNPDEKRISLSIKET 362



 Score = 73.2 bits (178), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 134/279 (48%), Gaps = 33/279 (11%)

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
            TFI +GDIV G++ K+ +      V +G    G V   EL ++ V D     + GQ ++ 
Sbjct: 28   TFIKKGDIVKGKVIKVDADQA--FVDVGYKYDGVVPVKELSSVQVDDASQNVEIGQEIEL 85

Query: 1315 KVLEISRTVRGTFHVE---LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            KVL I        H E   LS R+ +DG  S +   L+ D++       K+      ++ 
Sbjct: 86   KVLTIDD------HREKLVLSKRA-VDGEKSWDK--LAADMENKTILEAKV----AEVVK 132

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V +V  +G F+  S  +  +  + + SD            G+ +  RV  ++    +
Sbjct: 133  GGLVVDVGLRG-FVPAS--MVERTFVEDFSDYK----------GRTLRLRVKEMDREKNK 179

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
            V ++ K          +   L+ L VG ++ G ++R+  +G F+ I   +  GL H+SE+
Sbjct: 180  VILSQKDVLDEEFEGKKKEVLAKLSVGQVLDGTVQRLTQFGAFVDIGGVD--GLVHISEM 237

Query: 1492 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  HV+    + + G+KV+V++LKVD E  RISL +K++
Sbjct: 238  AWHHVEKPSEVVKEGDKVQVQVLKVDPENERISLSIKAT 276



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 84/187 (44%), Gaps = 23/187 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            G ++ G + ++     G  V IG  + G VH +E+    V  P     EG  V+ +VL++
Sbjct: 206  GQVLDGTVQRLTQF--GAFVDIG-GVDGLVHISEMAWHHVEKPSEVVKEGDKVQVQVLKV 262

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                     + LS++++                  PG   +    ++   IV G VK + 
Sbjct: 263  DPE---NERISLSIKAT-----------------QPGPWQQVAGRINTGDIVTGTVKRLV 302

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
              G FI ++  ++  V +S ++  +V +P++    G+ V  +VL + P  KR+ +++K +
Sbjct: 303  QFGAFIEVAPGVEGLVHISQIAHRHVATPQEVLKEGEEVKVKVLDMNPDEKRISLSIKET 362

Query: 1440 DSRTASQ 1446
            +   A +
Sbjct: 363  EEAPARE 369


>gi|415712938|ref|ZP_11465049.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
 gi|415713844|ref|ZP_11465297.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
 gi|388056538|gb|EIK79402.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
 gi|388059567|gb|EIK82298.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
          Length = 500

 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 171/369 (46%), Gaps = 41/369 (11%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G V K+D++  LL I    +  +     + E S  ++      +    T   L +
Sbjct: 36   GDLVEGTVVKIDHDEVLLDIGYKTEGVI----PSRELSIKKDVDPDDVVEVGDTIEALVV 91

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIG 1282
             KE K  RL+L   +        DI        I + D IV G + + + G  GL+V IG
Sbjct: 92   TKEDKEGRLILSKKRAQYERAWGDIEK------IKDADGIVEGTVIEAVKG--GLIVDIG 143

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
               +      E++ +    P  G    Q +K K+LE+ +      +V LS R  L+   S
Sbjct: 144  LRGFLPASLVEMRRVRDLSPYIG----QKIKAKILELDKNRN---NVVLSRRQFLEETQS 196

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
                               +  L    I +G V ++ + G F+ L   +D  + +S LS 
Sbjct: 197  EVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSW 242

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIV 1461
             +++ P +   +G  V   VL V+   +R+ ++LK +      +      +  HV G +V
Sbjct: 243  KHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVV 297

Query: 1462 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
             G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ + GE+V VK++ VD ++R
Sbjct: 298  KGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRR 356

Query: 1522 RISLGMKSS 1530
            RISL +K +
Sbjct: 357  RISLSLKQA 365



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI+++ K T          ++       +  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---VVKGKVTKIVQFGVFISVEDGIEG 319

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LVHISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSL 362



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 21/254 (8%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 641
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 702 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
            P  VV G V  I++ G F+     + G    S+  +    +       G+ V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDV 351

Query: 820 NSETGRITLSLKQS 833
           + +  RI+LSLKQ+
Sbjct: 352 DLDRRRISLSLKQA 365



 Score = 46.6 bits (109), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 114/259 (44%), Gaps = 37/259 (14%)

Query: 1197 AYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             + P+ L E +R      +IG+ +   +L ++K +  + L  R F +       +  ++ 
Sbjct: 146  GFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLE-------ETQSEV 198

Query: 1253 MQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
             +TF+ +   G I  G +S I++   G  V +G  + G +H +EL    +  P      G
Sbjct: 199  RETFLSQLKKGQIREGVVSSIVNF--GAFVDLGG-VDGLIHVSELSWKHIDHPSEVVKVG 255

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
              V  +VL++         + LSL+++ +                P +   +     P  
Sbjct: 256  DKVTVEVLDVDLDRE---RISLSLKATQE---------------DPWQRFARTH--VPGQ 295

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +V+G V  +   G FI +   ++  V +S L++ +VE+PE     G+ V  +V+ V+   
Sbjct: 296  VVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFVKVIDVDLDR 355

Query: 1430 KRVEVTLKTSDSRTASQSE 1448
            +R+ ++LK ++      SE
Sbjct: 356  RRISLSLKQANEAVDPNSE 374



 Score = 45.1 bits (105), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 905 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
              +LA   VE+       G  +   ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKGGEEVFVKVIDVDLDRRRISLSLK 363



 Score = 41.2 bits (95), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)

Query: 371 KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGLGL 425
           +K+ A+IL +D     V L+   +L   ++       S +K G I  +  VV      G 
Sbjct: 167 QKIKAKILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQI--REGVVSSIVNFGA 224

Query: 426 LLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGILK 482
            +D+          + +S+++ + +    +  K G  V V +L     R    L+    +
Sbjct: 225 FVDLGGVD----GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQ 280

Query: 483 ASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
              ++    TH    PG VVKGKV  +  FG  +    G++ L  +  ++   +  P   
Sbjct: 281 EDPWQRFARTHV---PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETV 337

Query: 543 FKVGAELVFRVLGV--KSKRITVTHKKT 568
            K G E+  +V+ V    +RI+++ K+ 
Sbjct: 338 VKGGEEVFVKVIDVDLDRRRISLSLKQA 365


>gi|156741406|ref|YP_001431535.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
            DSM 13941]
 gi|156232734|gb|ABU57517.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 503

 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 10/186 (5%)

Query: 1352 VDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1411
             + P     +++DL+P M ++G V ++   G F+ +    D  V +S +SD  +ESP   
Sbjct: 123  AEAPTGRPRRVKDLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDL 182

Query: 1412 FPIGKLVAGRVLSVEPLSKRVEVTLKTSD-------SRTASQSEI--NNLSNLHVGDIVI 1462
              IG  V  RV SVEP  +R+ +T++  +        R   + E+  + L+ L VGD V 
Sbjct: 183  VKIGDTVKVRVKSVEPDGRRISLTMRMKERGAEPRSGRGKKKPEVDYDKLAALRVGDNVE 242

Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            G +  +  +G+F+ I      GL HVSEL+E  V+  E + + G+    K+L+VD E  R
Sbjct: 243  GTVTGLAPFGVFVDI-GVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAEGAR 301

Query: 1523 ISLGMK 1528
            ISL ++
Sbjct: 302  ISLSLR 307



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 116/262 (44%), Gaps = 34/262 (12%)

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G +T I  +G FV    G  G    SE+       PS +  +G  VK R+ S  P  RR
Sbjct: 143 EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRR 202

Query: 650 INLSFMMKP-------------TRVSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGY 694
           I+L+  MK                V  D L  +++G  V G V  + P  V V +   G 
Sbjct: 203 ISLTMRMKERGAEPRSGRGKKKPEVDYDKLAALRVGDNVEGTVTGLAPFGVFVDI---GV 259

Query: 695 SK-GTIPTEHLAD-HLEHATVMKSVIKPG--YEFDQLLVLDNESSNLLLSAKYSLINSAQ 750
            K G +    LA+  +E A   + V++ G  Y F ++L +D E + + LS + +     Q
Sbjct: 260 GKDGLVHVSELAEGRVEKA---EDVVQVGQTYTF-KVLEVDAEGARISLSLRRA--QRGQ 313

Query: 751 QLPSDASHIHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           +L      +    ++ G +  +   G FV   +GR  G    S+  + + A +     VG
Sbjct: 314 KL----QQLEKGQILEGTISGLAPFGAFVDIGVGR-DGLVHISELSNARVARVEDAVKVG 368

Query: 810 QSVRSNILDVNSETGRITLSLK 831
             V+  +LDV+ ++ RI+LSL+
Sbjct: 369 DKVQVRVLDVDPQSKRISLSLR 390



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 123/297 (41%), Gaps = 30/297 (10%)

Query: 1042 KAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKS 1101
            +A +E  T   +R K  +    G  ++  +T I    + +  G+G  G +HI+E++D + 
Sbjct: 120  QAPAEAPTGRPRRVKDLAP---GMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTR- 175

Query: 1102 NVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECD- 1160
              +E+     KIG TV  R+  KS +PD ++  L     +      S  G K    + D 
Sbjct: 176  --IESPSDLVKIGDTVKVRV--KSVEPDGRRISLTMRMKERGAEPRSGRGKKKPEVDYDK 231

Query: 1161 ---VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217
               + +G  V G V  +      + I       + +  S      +++ +    +G+  T
Sbjct: 232  LAALRVGDNVEGTVTGLAPFGVFVDIGVGKDGLVHV--SELAEGRVEKAEDVVQVGQTYT 289

Query: 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
              VL ++ E   + L LR  Q G            +Q  + +G I+ G IS +     G 
Sbjct: 290  FKVLEVDAEGARISLSLRRAQRG----------QKLQQ-LEKGQILEGTISGLAP--FGA 336

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
             V IG    G VH +EL N  V+        G  V+ +VL++    +    + LSLR
Sbjct: 337  FVDIGVGRDGLVHISELSNARVARVEDAVKVGDKVQVRVLDVDPQSK---RISLSLR 390


>gi|422324913|ref|ZP_16405950.1| 30S ribosomal protein S1 [Rothia mucilaginosa M508]
 gi|353343622|gb|EHB87937.1| 30S ribosomal protein S1 [Rothia mucilaginosa M508]
          Length = 484

 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 191/405 (47%), Gaps = 55/405 (13%)

Query: 1138 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1187
            +S     + +++IG +  F E  + +I     G  V+G V K+D++  LL I       +
Sbjct: 1    MSTNIPQVAINDIGDEQAFLEAVEKTIKVFNDGDLVSGQVVKIDHDEVLLDIGYKTEGVI 60

Query: 1188 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1247
             ++   +    +PSE+ E      +G  V   VL+  KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDIDPSEVVE------LGSEVEALVLT--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1248 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            I        + E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------VKENDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
               Q ++ K++E+ +      +V LS R+ L+   S   S               + +L 
Sbjct: 164  ---QQIEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSSF-------------LNELE 204

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
               + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+
Sbjct: 205  KGQVREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVD 263

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGL 1485
               +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E+  + GL
Sbjct: 264  LDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVED-GIEGL 317

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             H+SEL+  HVD  E +   GE+V VKI+ +D ++RRISL +K +
Sbjct: 318  VHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   V
Sbjct: 201 NELEKGQVREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEV 259

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G
Sbjct: 260 LEVDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEG 316

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL          +  VG+ V  +I+      RRI+LS 
Sbjct: 317 LVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSL 359



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 157/350 (44%), Gaps = 35/350 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G+V+ +D    ++      + + P   +S    + P +  ++G+E+   VL  + 
Sbjct: 33  GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVELGSEVEALVLTKED 92

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKVKE-NDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R S  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELE 204

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P    + L
Sbjct: 205 KGQVREGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQP-VTVEVL 260

Query: 728 LV-LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
            V LD E  +L L A        Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 261 EVDLDRERVSLSLKA-------TQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 785 LTGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+ +  +  DL+ +   VG+ V   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISE-LATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362


>gi|288556073|ref|YP_003428008.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
 gi|288547233|gb|ADC51116.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
          Length = 385

 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 196/408 (48%), Gaps = 54/408 (13%)

Query: 1149 EIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQR 1208
            E+ ++ L E   +++G  VTG V KV+++ AL+ +        F ++     SEL     
Sbjct: 4    EMNNEQLAEMKSLAVGDVVTGKVTKVEDKQALVDVG-------FKVEGIVPISELS---- 52

Query: 1209 RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGR 1266
              H+ K     VLS++ E K+  L L   +  +S + V      D ++    +G+I+   
Sbjct: 53   SLHVEK--VSDVLSVDDELKMKILKLEDDELILSKRAVQAEKAWDQLRKQQEKGEIITAE 110

Query: 1267 ISKILSGVGGLVVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISR 1321
            +++++ G  GLVV +G     P      HF E          S Y +G+ ++ KV E+ +
Sbjct: 111  VAEVVKG--GLVVDVGVRGFIPASLVERHFVE--------DFSDY-KGRELRLKVEELDQ 159

Query: 1322 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1381
                     LS R+ LD        ++             ++ L     V+G V+ +T+ 
Sbjct: 160  ENNKLI---LSQRAVLDAELEEKKKNV-------------LQSLKSGDTVEGTVQRLTNF 203

Query: 1382 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            G F+ +   +D  V +S L+   VE+P      G  V  +VLSV+P S+RV +++K  D+
Sbjct: 204  GAFVDVG-GVDGLVHISQLAHHRVETPSDIVNEGDKVKVKVLSVDPDSERVSLSIK--DT 260

Query: 1442 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1501
            +     E+     +  GD++ G ++R+ S+G F+ +    + GL H+S+++  H+     
Sbjct: 261  QPGPWEEV--AGQISTGDVIEGTVRRLVSFGAFVEV-APGVEGLVHISQIANRHIGTPSE 317

Query: 1502 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1549
            +   GEKV+VK+L V+ + +RISL ++    K+D ++   ++ E + E
Sbjct: 318  VLTEGEKVEVKVLDVNLDDKRISLSIR-ELLKDDTNDGDYAAYEANKE 364



 Score = 44.7 bits (104), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G  V+G V  + +FGA V   GGV  L  +  ++   +  P      G ++  +VL 
Sbjct: 187 LKSGDTVEGTVQRLTNFGAFVDV-GGVDGLVHISQLAHHRVETPSDIVNEGDKVKVKVLS 245

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V   S+R++++ K T       +    +      +  G + ++   G FV    GV+G  
Sbjct: 246 VDPDSERVSLSIKDTQPGPWEEVAGQISTGD---VIEGTVRRLVSFGAFVEVAPGVEGLV 302

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S++       PS +   G+ V+ +++      +RI+LS 
Sbjct: 303 HISQIANRHIGTPSEVLTEGEKVEVKVLDVNLDDKRISLSI 343


>gi|257068664|ref|YP_003154919.1| 30S ribosomal protein S1 [Brachybacterium faecium DSM 4810]
 gi|256559482|gb|ACU85329.1| SSU ribosomal protein S1P [Brachybacterium faecium DSM 4810]
          Length = 493

 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 186/391 (47%), Gaps = 54/391 (13%)

Query: 1151 GSKLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPS 1201
            G+  L    D +I     G  V G V KVD++  LL I       + ++   +    +P 
Sbjct: 16   GADELMAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPG 75

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1261
            E+ E      +G  +   VL   KE K  RL+L   +        + +   ++    +  
Sbjct: 76   EIVE------VGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIEQIKEDEG 122

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISR 1321
            +V GR+ +++ G  GL+V IG   +      E++ +    P  G    Q ++ K++E+ +
Sbjct: 123  VVTGRVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEAKIIELDK 176

Query: 1322 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1381
                  +V LS R+ L+   S   SD              ++ L    + +G V ++ + 
Sbjct: 177  NRN---NVVLSRRAYLEETQSAVRSDF-------------LQTLQKGQVREGAVSSIVNF 220

Query: 1382 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            G F+ L   +D  V +S LS  +++ P +   +G+ V+  VL V+   +RV ++LK    
Sbjct: 221  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVSVEVLDVDMDRERVSLSLK---- 275

Query: 1442 RTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
              A+Q +   L +  H +G++V G++ ++  +G F+ +E+  + GL H+SEL++ HVD  
Sbjct: 276  --ATQEDPWQLFARTHAIGEVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAQRHVDLP 332

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E +    + V VK++ +D E+RRISL +K +
Sbjct: 333  EQVVTVDQDVFVKVIDIDLERRRISLSLKQA 363



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 163/392 (41%), Gaps = 44/392 (11%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEIVEVGDEIEALVLQKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEQIKE--DEGVVTGRVIEVVKGGLIVDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSDFLQTLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  G V  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 206 KGQVREGAVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVSVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 260 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHAIGEVVPGKVTKLVPFGAFVRVEDGI 315

Query: 786 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSC----CSSTDA 840
            G    S+    +  DL  +   V Q V   ++D++ E  RI+LSLKQ+         D 
Sbjct: 316 EGLVHISELAQ-RHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQANEGVDPEGDDT 374

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
           +F    +       M      NG E K+ EGF
Sbjct: 375 TFDPALY------GMAAEYDANG-EYKYPEGF 399



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 2/159 (1%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   VL 
Sbjct: 204 LQKGQVREGAVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVSVEVLD 262

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           V   R  V+      +     L +   A   ++  G +TK+   G FVR  +G++G    
Sbjct: 263 VDMDRERVSLSLKATQEDPWQLFARTHAIGEVVP-GKVTKLVPFGAFVRVEDGIEGLVHI 321

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           SEL       P  +  V Q V  +++      RRI+LS 
Sbjct: 322 SELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSL 360



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 119/294 (40%), Gaps = 60/294 (20%)

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
           G +V G V  V  + V++ +   GY ++G IP+  L+  ++H      +++ G E + L+
Sbjct: 34  GDIVEGTVVKVDHDEVLLDI---GYKTEGVIPSRELS--IKHDVDPGEIVEVGDEIEALV 88

Query: 729 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           +  +++   L+LS K +    A    +Q+  D        VV G V  +++ G  V    
Sbjct: 89  LQKEDKEGRLILSKKRAQYERAWGTIEQIKED------EGVVTGRVIEVVKGGLIVDI-- 140

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDA 840
            L GF P S     +  DL    YVGQ + + I++++     + LS +   +   S+  +
Sbjct: 141 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRS 198

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            F+Q           LQ                 G V EG V    +FG  V       V
Sbjct: 199 DFLQ----------TLQK----------------GQVREGAVSSIVNFGAFVDL---GGV 229

Query: 901 YGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
            G +   +L+          VE G  +   +LDV      V LSLK    D ++
Sbjct: 230 DGLVHVSELSWKHIDHPSEVVEVGQKVSVEVLDVDMDRERVSLSLKATQEDPWQ 283



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 113/245 (46%), Gaps = 31/245 (12%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R    + ++G+ +   ++ ++K +  + L  R +   + +    + +D +QT
Sbjct: 147  PASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAY---LEETQSAVRSDFLQT 203

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
             + +G +  G +S I++   G  V +G  + G VH +EL    +  P    + GQ V  +
Sbjct: 204  -LQKGQVREGAVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVSVE 259

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            VL++         V LSL+++ +                P +   +   +    +V G V
Sbjct: 260  VLDVDMDRE---RVSLSLKATQE---------------DPWQLFARTHAIGE--VVPGKV 299

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
              +   G F+ +   ++  V +S L+  +V+ PE+   + + V  +V+ ++   +R+ ++
Sbjct: 300  TKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLS 359

Query: 1436 LKTSD 1440
            LK ++
Sbjct: 360  LKQAN 364


>gi|379058793|ref|ZP_09849319.1| 30S ribosomal protein S1 [Serinicoccus profundi MCCC 1A05965]
          Length = 486

 Score = 97.8 bits (242), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 190/405 (46%), Gaps = 55/405 (13%)

Query: 1143 SMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            S + V++IGS+  L    D +I     G  V G + KVD +  LL I       + ++  
Sbjct: 11   SQIAVNDIGSEEELLAAIDATIKNFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVIPSREL 70

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +PSE+        +G  V   VL   KE K  RL+L   +        + +  +
Sbjct: 71   AIKHDVDPSEV------VTVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGS 117

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    +
Sbjct: 118  IEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----I 171

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            + K++E+ +      +V LS R+ L+   S   +               +++L+   +  
Sbjct: 172  EAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF-------------LKELAKGQVRS 215

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV
Sbjct: 216  GVVSSIVNFGAFVDLGGGVDGLVHVSELSWKHIDHPGEVVEVGDEVTVEVLDVDMDRERV 275

Query: 1433 EVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
             ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL
Sbjct: 276  SLSLKAT-----LEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISEL 329

Query: 1492 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
            +E HV+  E I   G +V VK++ +D E+RRISL +K +   NDA
Sbjct: 330  AERHVELPEQIVTVGAEVFVKVIDIDLERRRISLSLKQA---NDA 371



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G V  G V ++ +FGA V   GGV  L  +  +S   I  PG+  +VG E+   VL V  
Sbjct: 211 GQVRSGVVSSIVNFGAFVDLGGGVDGLVHVSELSWKHIDHPGEVVEVGDEVTVEVLDVDM 270

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K TL         ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATLEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           EL       P  +  VG  V  +++      RRI+LS 
Sbjct: 328 ELAERHVELPEQIVTVGAEVFVKVIDIDLERRRISLSL 365



 Score = 51.2 bits (121), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 131/294 (44%), Gaps = 42/294 (14%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 112  ERAWGSIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 170

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1272
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G +S I++
Sbjct: 171  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLKELAKGQVRSGVVSSIVN 223

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
               G  V +G  + G VH +EL    +  P    + G  V  +VL++         V LS
Sbjct: 224  F--GAFVDLGGGVDGLVHVSELSWKHIDHPGEVVEVGDEVTVEVLDVDMDRE---RVSLS 278

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
            L+++L+    T +   +     PGK                 V  +   G F+ +   ++
Sbjct: 279  LKATLEDPWQTFARTHAIGQVVPGK-----------------VTKLVPFGAFVRVEDGIE 321

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1446
              V +S L++ +VE PE+   +G  V  +V+ ++   +R+ ++LK ++   A++
Sbjct: 322  GLVHISELAERHVELPEQIVTVGAEVFVKVIDIDLERRRISLSLKQANDAVANE 375



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 30/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   ++    V P +   VG E+   VL  + 
Sbjct: 38  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELAIKHDVDPSEVVTVGDEVEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGSIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    + 
Sbjct: 154 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELA 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +       +V   G   G +    L+  H++H      V++ G E   +
Sbjct: 210 KGQVRSGVVSSIVNFGA--FVDLGGGVDGLVHVSELSWKHIDHPG---EVVEVGDEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +L +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLDVDMDRERVSLSLKATLEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAERHVELPEQIVTVGAEVFVKVIDIDLERRRISLSLKQA 368



 Score = 43.9 bits (102), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 124/284 (43%), Gaps = 39/284 (13%)

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
           G +V GV+  V  + V++ +   GY ++G IP+  LA  ++H      V+  G E + L+
Sbjct: 38  GDIVEGVIVKVDRDEVLLDI---GYKTEGVIPSRELA--IKHDVDPSEVVTVGDEVEALV 92

Query: 729 VL-DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           +  +++   L+LS K +    A    S       + VV G V  +++ G  +     L G
Sbjct: 93  LQKEDKEGRLILSKKRAQYERA--WGSIEKIKEEDGVVTGTVIEVVKGGLILDI--GLRG 148

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDASFMQ 844
           F P S     +  DL    YVG+ + + I++++     + LS +   +   S    +F++
Sbjct: 149 FLPASLVEMRRVRDLQP--YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLK 206

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFI-IGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
           E    + +  ++ S  + G+       F+ +G  ++G VH S      +S++        
Sbjct: 207 ELAKGQVRSGVVSSIVNFGA-------FVDLGGGVDGLVHVSE-----LSWK-------- 246

Query: 904 ITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
             H    G  VE G  +   +LDV      V LSLK    D ++
Sbjct: 247 --HIDHPGEVVEVGDEVTVEVLDVDMDRERVSLSLKATLEDPWQ 288


>gi|402299919|ref|ZP_10819481.1| 30S ribosomal protein S1 [Bacillus alcalophilus ATCC 27647]
 gi|401724905|gb|EJS98228.1| 30S ribosomal protein S1 [Bacillus alcalophilus ATCC 27647]
          Length = 383

 Score = 97.8 bits (242), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 187/371 (50%), Gaps = 43/371 (11%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            + +G  ++G + KV+++ A + +        + +D     SEL       H+ K     V
Sbjct: 15   IVVGDVISGKITKVEDKQAFVDVG-------YKVDGVIPISELS----SLHVEK--VSDV 61

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGLV 1278
            LS++ E +L  L L   +  +S + V       ++Q     G+++   I+ ++ G  GLV
Sbjct: 62   LSVDDEVELKVLKLEDDELVLSKRAVQAEKAWVSLQNSFETGEVIETIIADVVKG--GLV 119

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V +G  + G +  + ++   V D  S Y +G+ ++ KV+E+ +         LS R  LD
Sbjct: 120  VDLG--VRGFIPASLVERHYVED-FSDY-KGKTLRLKVVELDKDNNKLI---LSQRVVLD 172

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
                        +V+   KHL  ++ + P M+++G V+ +T+ G F+ L   +D  V +S
Sbjct: 173  -----------EEVEKQKKHL--LQGIEPGMVIEGTVQRLTNFGAFVDLG-GVDGLVHIS 218

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1458
             L+   VESP      G  V  +VLSV+  S+RV +++K  D+      +I     +  G
Sbjct: 219  QLAHHRVESPSDVVSEGDKVKVKVLSVDTESERVSLSIK--DTLPGPWEKIEG--TISQG 274

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
            D+V G +KR+ S+G FI + +  + GL H+S+++  H+     +   GEKV+ K+L V+ 
Sbjct: 275  DVVSGTVKRLVSFGAFIEVAD-GVEGLVHISQIANRHIGTPSEVLTEGEKVQAKVLDVNL 333

Query: 1519 EKRRISLGMKS 1529
            +++RISL +++
Sbjct: 334  DEKRISLSIRA 344



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PGMV++G V  + +FGA V   GGV  L  +  ++   +  P      G ++  +VL 
Sbjct: 186 IEPGMVIEGTVQRLTNFGAFVDL-GGVDGLVHISQLAHHRVESPSDVVSEGDKVKVKVLS 244

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V  +S+R++++ K TL      I  + ++     +  G + ++   G F+   +GV+G  
Sbjct: 245 VDTESERVSLSIKDTLPGPWEKIEGTISQGD---VVSGTVKRLVSFGAFIEVADGVEGLV 301

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S++       PS +   G+ V+ +++      +RI+LS 
Sbjct: 302 HISQIANRHIGTPSEVLTEGEKVQAKVLDVNLDEKRISLSI 342



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
            L  +  G ++ G ++R+ ++G F+ +   +  GL H+S+L+   V++   +   G+KVKV
Sbjct: 183  LQGIEPGMVIEGTVQRLTNFGAFVDLGGVD--GLVHISQLAHHRVESPSDVVSEGDKVKV 240

Query: 1512 KILKVDKEKRRISLGMKSS 1530
            K+L VD E  R+SL +K +
Sbjct: 241  KVLSVDTESERVSLSIKDT 259



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 158/395 (40%), Gaps = 72/395 (18%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 643
           +  G ITK+E    FV     V G  P SEL      + S +  V   V+ +++      
Sbjct: 20  VISGKITKVEDKQAFVDVGYKVDGVIPISELSSLHVEKVSDVLSVDDEVELKVLKLEDDE 79

Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
           +  S+R   +   +   VS  +  + G ++  ++  V    +VV +  +G+   ++   H
Sbjct: 80  LVLSKR---AVQAEKAWVSLQNSFETGEVIETIIADVVKGGLVVDLGVRGFIPASLVERH 136

Query: 704 LADHL---EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-- 758
             +     +  T+   V++          LD +++ L+LS +  L    +++     H  
Sbjct: 137 YVEDFSDYKGKTLRLKVVE----------LDKDNNKLILSQRVVL---DEEVEKQKKHLL 183

Query: 759 --IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
             I P  V+ G V  +   G FV  LG + G    S+    +    S     G  V+  +
Sbjct: 184 QGIEPGMVIEGTVQRLTNFGAFVD-LGGVDGLVHISQLAHHRVESPSDVVSEGDKVKVKV 242

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW--VEGFII 874
           L V++E+ R++LS+K +                                  W  +EG I 
Sbjct: 243 LSVDTESERVSLSIKDTLPGP------------------------------WEKIEGTIS 272

Query: 875 -GSVIEGKVHESNDFGVVVSFEEHSD-VYGFITHHQLAGATVES-------GSVIQAAIL 925
            G V+ G V     FG   +F E +D V G +   Q+A   + +       G  +QA +L
Sbjct: 273 QGDVVSGTVKRLVSFG---AFIEVADGVEGLVHISQIANRHIGTPSEVLTEGEKVQAKVL 329

Query: 926 DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKR 960
           DV   E+ + LS++ +  +   +  ++ ++ K++ 
Sbjct: 330 DVNLDEKRISLSIRALIEEDVEDHYADYESHKEEE 364



 Score = 41.6 bits (96), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
            SE+  + ++ VGD++ G+I +VE    F+ +    + G+  +SELS  HV+ +  +    
Sbjct: 7    SEVAGMKSIVVGDVISGKITKVEDKQAFVDV-GYKVDGVIPISELSSLHVEKVSDVLSVD 65

Query: 1507 EKVKVKILKVDKEKRRIS 1524
            ++V++K+LK++ ++  +S
Sbjct: 66   DEVELKVLKLEDDELVLS 83


>gi|415726676|ref|ZP_11470947.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
 gi|388062902|gb|EIK85501.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
          Length = 499

 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 171/369 (46%), Gaps = 41/369 (11%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G V K+D++  LL I    +  +     + E S  ++      +    T   L +
Sbjct: 36   GDLVEGTVVKIDHDEVLLDIGYKTEGVI----PSRELSIKKDVDPDDVVEVGDTIEALVV 91

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIG 1282
             KE K  RL+L   +        DI        I + D IV G + + + G  GL+V IG
Sbjct: 92   TKEDKEGRLILSKKRAQYERAWGDIEK------IKDADGIVEGTVIEAVKG--GLIVDIG 143

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
               +      E++ +    P  G    Q +K K+LE+ +      +V LS R  L+   S
Sbjct: 144  LRGFLPASLVEMRRVRDLSPYIG----QKIKAKILELDKNRN---NVVLSRRQFLEETQS 196

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
                               +  L    I +G V ++ + G F+ L   +D  + +S LS 
Sbjct: 197  EVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSW 242

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIV 1461
             +++ P +   +G  V   VL V+   +R+ ++LK +      +      +  HV G +V
Sbjct: 243  KHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVV 297

Query: 1462 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
             G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ +A E+V VK++ VD ++R
Sbjct: 298  KGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKANEEVFVKVIDVDLDRR 356

Query: 1522 RISLGMKSS 1530
            RISL +K +
Sbjct: 357  RISLSLKQA 365



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 21/262 (8%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 641
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 702 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
            P  VV G V  I++ G F+     + G    S+  +    +        + V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFVKVIDV 351

Query: 820 NSETGRITLSLKQSCCSSTDAS 841
           + +  RI+LSLKQ+  +   AS
Sbjct: 352 DLDRRRISLSLKQANEAVDPAS 373



 Score = 45.1 bits (105), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 905 THHQLAGATVESGSVIQAA-------ILDVAKAERLVDLSLK 939
              +LA   VE+   +  A       ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLK 363


>gi|415728146|ref|ZP_11471719.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
 gi|388065284|gb|EIK87775.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
          Length = 500

 Score = 97.4 bits (241), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 171/369 (46%), Gaps = 41/369 (11%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G V K+D++  LL I    +  +     + E S  ++      +    T   L +
Sbjct: 36   GDLVEGTVVKIDHDEVLLDIGYKTEGVI----PSRELSIKKDVDPDDVVEVGDTIEALVV 91

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIG 1282
             KE K  RL+L   +        DI        I + D IV G + + + G  GL+V IG
Sbjct: 92   TKEDKEGRLILSKKRAQYERAWGDIEK------IKDADGIVEGTVIEAVKG--GLIVDIG 143

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
               +      E++ +    P  G    Q +K K+LE+ +      +V LS R  L+   S
Sbjct: 144  LRGFLPASLVEMRRVRDLSPYIG----QKIKAKILELDKNRN---NVVLSRRQFLEETQS 196

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
                               +  L    I +G V ++ + G F+ L   +D  + +S LS 
Sbjct: 197  EVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSW 242

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIV 1461
             +++ P +   +G  V   VL V+   +R+ ++LK +      +      +  HV G +V
Sbjct: 243  KHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVV 297

Query: 1462 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
             G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ +A E+V VK++ VD ++R
Sbjct: 298  KGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKANEEVFVKVIDVDLDRR 356

Query: 1522 RISLGMKSS 1530
            RISL +K +
Sbjct: 357  RISLSLKQA 365



 Score = 47.8 bits (112), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 21/255 (8%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 641
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 702 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
            P  VV G V  I++ G F+     + G    S+  +    +        + V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFVKVIDV 351

Query: 820 NSETGRITLSLKQSC 834
           + +  RI+LSLKQ+ 
Sbjct: 352 DLDRRRISLSLKQAT 366



 Score = 45.1 bits (105), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 905 THHQLAGATVESGSVIQAA-------ILDVAKAERLVDLSLK 939
              +LA   VE+   +  A       ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLK 363



 Score = 43.9 bits (102), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 111/256 (43%), Gaps = 37/256 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R      +IG+ +   +L ++K +  + L  R F +       +  ++  +T
Sbjct: 149  PASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLE-------ETQSEVRET 201

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+ +   G I  G +S I++   G  V +G  + G +H +EL    +  P      G  V
Sbjct: 202  FLSQLKKGQIREGVVSSIVNF--GAFVDLGG-VDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         + LSL+++ +                P +   +     P  +V+
Sbjct: 259  TVEVLDVDLDRE---RISLSLKATQE---------------DPWQRFARTH--VPGQVVK 298

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G FI +   ++  V +S L++ +VE+PE      + V  +V+ V+   +R+
Sbjct: 299  GKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFVKVIDVDLDRRRI 358

Query: 1433 EVTLKTSDSRTASQSE 1448
             ++LK +       SE
Sbjct: 359  SLSLKQATEAVDPNSE 374


>gi|415718164|ref|ZP_11467146.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
 gi|388059993|gb|EIK82694.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
          Length = 500

 Score = 97.4 bits (241), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 171/369 (46%), Gaps = 41/369 (11%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G V K+D++  LL I    +  +     + E S  ++      +    T   L +
Sbjct: 36   GDLVEGTVVKIDHDEVLLDIGYKTEGVI----PSRELSIKKDVDPDDVVEVGDTIEALVV 91

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIG 1282
             KE K  RL+L   +        DI        I + D IV G + + + G  GL+V IG
Sbjct: 92   TKEDKEGRLILSKKRAQYERAWGDIEK------IKDADGIVEGTVIEAVKG--GLIVDIG 143

Query: 1283 PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1342
               +      E++ +    P  G    Q +K K+LE+ +      +V LS R  L+   S
Sbjct: 144  LRGFLPASLVEMRRVRDLSPYIG----QKIKAKILELDKNRN---NVVLSRRQFLEETQS 196

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
                               +  L    I +G V ++ + G F+ L   +D  + +S LS 
Sbjct: 197  EVRETF-------------LSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSW 242

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIV 1461
             +++ P +   +G  V   VL V+   +R+ ++LK +      +      +  HV G +V
Sbjct: 243  KHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVPGQVV 297

Query: 1462 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
             G++ ++  +G+FI++E+  + GL H+SEL+  HV+N ET+ +A E+V VK++ VD ++R
Sbjct: 298  KGKVTKIVQFGVFISVED-GIEGLVHISELANRHVENPETVVKANEEVFVKVIDVDLDRR 356

Query: 1522 RISLGMKSS 1530
            RISL +K +
Sbjct: 357  RISLSLKQA 365



 Score = 47.8 bits (112), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 21/255 (8%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 641
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 702 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
            P  VV G V  I++ G F+     + G    S+  +    +        + V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFVKVIDV 351

Query: 820 NSETGRITLSLKQSC 834
           + +  RI+LSLKQ+ 
Sbjct: 352 DLDRRRISLSLKQAT 366



 Score = 45.1 bits (105), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 905 THHQLAGATVESGSVIQAA-------ILDVAKAERLVDLSLK 939
              +LA   VE+   +  A       ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKANEEVFVKVIDVDLDRRRISLSLK 363



 Score = 43.9 bits (102), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 111/256 (43%), Gaps = 37/256 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R      +IG+ +   +L ++K +  + L  R F +       +  ++  +T
Sbjct: 149  PASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLE-------ETQSEVRET 201

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+ +   G I  G +S I++   G  V +G  + G +H +EL    +  P      G  V
Sbjct: 202  FLSQLKKGQIREGVVSSIVNF--GAFVDLGG-VDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         + LSL+++ +                P +   +     P  +V+
Sbjct: 259  TVEVLDVDLDRE---RISLSLKATQE---------------DPWQRFARTH--VPGQVVK 298

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G FI +   ++  V +S L++ +VE+PE      + V  +V+ V+   +R+
Sbjct: 299  GKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFVKVIDVDLDRRRI 358

Query: 1433 EVTLKTSDSRTASQSE 1448
             ++LK +       SE
Sbjct: 359  SLSLKQATEAVDPNSE 374


>gi|255327556|ref|ZP_05368623.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296]
 gi|255295450|gb|EET74800.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296]
          Length = 484

 Score = 97.1 bits (240), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 191/405 (47%), Gaps = 55/405 (13%)

Query: 1138 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1187
            +S     + +++IG +  F E  + +I     G  V+G V K+D++  LL I       +
Sbjct: 1    MSTNIPQVAINDIGDEQAFLEAVEKTIKVFNDGDLVSGQVVKIDHDEVLLDIGYKTEGVI 60

Query: 1188 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1247
             ++   +    +PSE+ E      +G  V   VL+  KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDIDPSEVVE------LGSEVEALVLT--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1248 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            I        + E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------VKENDGVVTGAVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
               Q ++ K++E+ +      +V LS R+ L+   S   S               + +L 
Sbjct: 164  ---QQLEAKIIELDKNRN---NVVLSRRAYLEETQSAVRSSF-------------LNELE 204

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
               + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+
Sbjct: 205  KGQVREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVD 263

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGL 1485
               +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E+  + GL
Sbjct: 264  LDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVED-GIEGL 317

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             H+SEL+  HVD  E +   GE+V VKI+ +D ++RRISL +K +
Sbjct: 318  VHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   V
Sbjct: 201 NELEKGQVREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEV 259

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G
Sbjct: 260 LEVDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEG 316

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL          +  VG+ V  +I+      RRI+LS 
Sbjct: 317 LVHISELATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSL 359



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 157/350 (44%), Gaps = 35/350 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G+V+ +D    ++      + + P   +S    + P +  ++G+E+   VL  + 
Sbjct: 33  GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVELGSEVEALVLTKED 92

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKVKE-NDGVVT-GAVIEVVKGGLILDI--GLRGFLPAS 148

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R S  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELE 204

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P    + L
Sbjct: 205 KGQVREGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQP-VTVEVL 260

Query: 728 LV-LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
            V LD E  +L L A        Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 261 EVDLDRERVSLSLKA-------TQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 785 LTGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+ +  +  DL+ +   VG+ V   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISE-LATRHVDLAEQVVSVGEEVFVKIIDIDMDRRRISLSLKQA 362


>gi|407044026|gb|EKE42318.1| S1 RNA binding domain containing protein, partial [Entamoeba
           nuttalli P19]
          Length = 1192

 Score = 97.1 bits (240), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 196/439 (44%), Gaps = 28/439 (6%)

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           + ++D  +G+   I  T      +++   + +E    + K+++ GS  + R++ +   +G
Sbjct: 86  ISKIDENVGI---IGETEDKEEVFLSKKQIKDESCSDIPKEFQIGSTHKGRVMYYSAFDG 142

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + S       +  D+K GM+++G +  V+  G IV+    +   C   +  +  
Sbjct: 143 YCGITTRESILSDKYQSIFDIKSGMIIEGTIKEVNEKGIIVKIGEKIYGFCDKINSGDIP 202

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
           I      FK   +  FRVL V ++   I +THK+TL+K+   I+++  E     IT G +
Sbjct: 203 IEDLQSVFKKEQKSKFRVLTVNNRNNSIYLTHKRTLMKATTPIITTIEETELNTITFGTV 262

Query: 594 TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 263 TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKVRIISFDKQLLLCSL 318

Query: 653 SFMMKPTRVSE--DDL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLA 705
           + +     V E  +D+    ++G +  G+V V     +++  I  G  +    +P   + 
Sbjct: 319 N-LFPEENVPEKYEDVSRHFEVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVI 376

Query: 706 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
           D  E   + K +I+ G    + L+L N+   ++++ K SLI+  +++    S        
Sbjct: 377 DGDEGQDIPK-MIRNGTILKECLLLKNQMGQMVITTKKSLISLRKKIGKFNSKEEMTVGK 435

Query: 766 H-GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
           + GYV  I    CF+ F   +T    R    D     + +   VGQ+V   +        
Sbjct: 436 YIGYVSKIKGKYCFISFYNGITILCYRMNVSD-TNLPIEEVLEVGQTVYGYL------NK 488

Query: 825 RITLSLKQSCCSSTDASFM 843
           +   SLK+S   S    FM
Sbjct: 489 KGIFSLKESSVGSIKEEFM 507



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 133/301 (44%), Gaps = 33/301 (10%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            I EG+I+ G +    +    + V I  +  G +H+ ++ N+    P      G+++   V
Sbjct: 834  IKEGEIIVGEVIGNNTKELKIKVLIKGNRIGYIHYCDISNVFNPFPRDYLQNGKYINMYV 893

Query: 1317 L----EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            L    EIS ++R  +     L+ + D +       + T + T        +++    I+ 
Sbjct: 894  LSNKPEISCSMRKEY-----LKEAYDEIFPPLIGGVQTRIVTK-------DNIKEGEILT 941

Query: 1373 GYV-KNVTSKGCFIMLSRKLDAKVLLSNLSDG---YVESPEKEFPIGKLVAGRVLSVEPL 1428
            GY+ K+   +G  +M+SR +   V    L D    + +   + F I +LV   ++  E L
Sbjct: 942  GYIIKSSEEEGVDVMVSRDVTIHVAPGELLDNTSYHGKDFSRIFCIQRLVKVSIIDKEGL 1001

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
                E TLK S           ++    V   VI  I    S GLF+   N+N+ GLCH 
Sbjct: 1002 ----EGTLKQSVIYPGIIKYFKDIKENIVTKCVIVNIT---SEGLFLRFFNSNIRGLCHC 1054

Query: 1489 SELSEDHV--DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
            S++ +  +    +E  ++  + +  K++ +DK+K R++  +K      D   ++M  EEE
Sbjct: 1055 SKIEDKKLTKKEMEKRFKIKDVIMAKVVHIDKKKHRVNFSIKPE----DVGEVEMKDEEE 1110

Query: 1547 S 1547
            +
Sbjct: 1111 T 1111


>gi|182414675|ref|YP_001819741.1| 30S ribosomal protein S1 [Opitutus terrae PB90-1]
 gi|177841889|gb|ACB76141.1| ribosomal protein S1 [Opitutus terrae PB90-1]
          Length = 557

 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 192/404 (47%), Gaps = 58/404 (14%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAVTGH 1219
            GQ   G V  + +  A + +   +   L I D ++     PSE+         G+ V   
Sbjct: 187  GQIRRGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRISHPSEM------LKQGEEVQVM 239

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            ++ +N+EK+ + L L+        +T     D +      G  V G++  ++    G  V
Sbjct: 240  IIEVNREKERVSLGLK--------QTTKNPWDEIDRKYPVGAKVHGKVVNLVPY--GAFV 289

Query: 1280 QIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            +I P + G VH TE+     ++ P      GQ +   VL I +  +    + L LR    
Sbjct: 290  EIEPGVEGLVHITEMSWTKRITKPSELLKVGQELDAVVLGIQKEEQ---KISLGLRQL-- 344

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
                 N  D+        +H   I        V+G V+N+T+ G FI L   +D  V +S
Sbjct: 345  ---EPNPWDMV-------RHNYPI-----GARVRGKVRNMTTYGAFIELEEGIDGMVHVS 389

Query: 1399 NLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1457
            ++S    V  P +    G  V   VL V+P  +R+ + +K     T   S+I+  ++  +
Sbjct: 390  DMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQQRISLGMKQL--ATDPWSDID--AHFRI 445

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            GD+V G + ++ S+G F+ +++  + GL H+S++SE+ +D ++ + + G++V  +++K+D
Sbjct: 446  GDVVTGTVTKLTSFGAFVELKD-GIDGLVHISQISEERIDKVKDVLKPGQQVTARVIKID 504

Query: 1518 KEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSS 1561
            +E+RR+ L +K++ +  +    Q+++E  + EA+      NRSS
Sbjct: 505  REERRLGLSIKAANYSAE----QLAAETNAFEAL------NRSS 538



 Score = 68.9 bits (167), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 130/281 (46%), Gaps = 33/281 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP--LSGYDE 1308
            DN+ T   EG +  GR+   + G  GL+V IG        F    +I V  P  L  Y  
Sbjct: 92   DNILTKFPEGSVATGRVKAKVKG--GLIVSIGVD-----AFMPASHIDVQPPKNLDQY-V 143

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
            GQ    KVL+I+   +   ++ LS R  ++   +     L             ++ + P 
Sbjct: 144  GQTYDFKVLKINLERK---NIVLSRRELIEEQRTNKRRAL-------------LDSIQPG 187

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G VKN+T  G FI L   +D  + ++++S G +  P +    G+ V   ++ V   
Sbjct: 188  QIRRGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRISHPSEMLKQGEEVQVMIIEVNRE 246

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
             +RV + LK +        EI+      VG  V G++  +  YG F+ IE   + GL H+
Sbjct: 247  KERVSLGLKQTTKN--PWDEIDR--KYPVGAKVHGKVVNLVPYGAFVEIE-PGVEGLVHI 301

Query: 1489 SELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            +E+S    +     + + G+++   +L + KE+++ISLG++
Sbjct: 302  TEMSWTKRITKPSELLKVGQELDAVVLGIQKEEQKISLGLR 342



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 150/361 (41%), Gaps = 42/361 (11%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PG + +G V  +  FGA +   G +  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 184 IQPGQIRRGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRISHPSEMLKQGEEVQVMIIE 242

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V  + +R+++  K+T       I   Y         HG +  +  +G FV    GV+G  
Sbjct: 243 VNREKERVSLGLKQTTKNPWDEIDRKYPVGAK---VHGKVVNLVPYGAFVEIEPGVEGLV 299

Query: 614 PRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK--- 668
             +E+       +PS +  VGQ +   ++      ++I+L    ++P      D+V+   
Sbjct: 300 HITEMSWTKRITKPSELLKVGQELDAVVLGIQKEEQKISLGLRQLEPNPW---DMVRHNY 356

Query: 669 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 722
            +G+ V G V  +T     + +      +G     H++D      + H +    ++K G 
Sbjct: 357 PIGARVRGKVRNMTTYGAFIEL-----EEGIDGMVHVSDMSWTRKVNHPS---EILKKGD 408

Query: 723 EFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETG 776
           E D +++ +D +   + L  K        QL +D      +H     VV G V  +   G
Sbjct: 409 EVDAIVLDVDPQQQRISLGMK--------QLATDPWSDIDAHFRIGDVVTGTVTKLTSFG 460

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            FV     + G    S+  + +   +      GQ V + ++ ++ E  R+ LS+K +  S
Sbjct: 461 AFVELKDGIDGLVHISQISEERIDKVKDVLKPGQQVTARVIKIDREERRLGLSIKAANYS 520

Query: 837 S 837
           +
Sbjct: 521 A 521



 Score = 57.4 bits (137), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 116/568 (20%), Positives = 226/568 (39%), Gaps = 85/568 (14%)

Query: 570  VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
            V   L   SS+ +  +  I  G IT+I ++   V      +G  P +E  +D G      
Sbjct: 4    VMQDLLAQSSFDKLKEGSIVPGVITEIRQNEVVVDIGGKSEGLVPANEF-IDIGE----- 57

Query: 630  YHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVV 686
              VG  ++  +           LSF +   + + D+++     GS+ +G V       ++
Sbjct: 58   LQVGSTIEVLVQKLEGKDGAPILSFDLAEQKKNWDNILTKFPEGSVATGRVKAKVKGGLI 117

Query: 687  VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 746
            V +    +    +P  H+   ++    +   +   Y+F ++L ++ E  N++LS +  LI
Sbjct: 118  VSIGVDAF----MPASHI--DVQPPKNLDQYVGQTYDF-KVLKINLERKNIVLS-RRELI 169

Query: 747  NSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
               +     A    I P  +  G V NI + G F+   G + G    +    G+ +  S+
Sbjct: 170  EEQRTNKRRALLDSIQPGQIRRGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRISHPSE 228

Query: 805  TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
                G+ V+  I++VN E  R++L LKQ+  +  D         ++ K            
Sbjct: 229  MLKQGEEVQVMIIEVNREKERVSLGLKQTTKNPWDE--------IDRK------------ 268

Query: 865  ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA------GATVESGS 918
                   + +G+ + GKV     +G  V  E   +    IT              ++ G 
Sbjct: 269  -------YPVGAKVHGKVVNLVPYGAFVEIEPGVEGLVHITEMSWTKRITKPSELLKVGQ 321

Query: 919  VIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIV 978
             + A +L + K E+ + L L+ +  + +     N     + R +  +       T  A +
Sbjct: 322  ELDAVVLGIQKEEQKISLGLRQLEPNPWDMVRHNYPIGARVRGKVRN-----MTTYGAFI 376

Query: 979  EIVKENYLVLSLPEYNHSI-GYASVSDYN-TQKF--PQKQFLNGQSVIATVMALPSSSTA 1034
            E+                I G   VSD + T+K   P +    G  V A V+ +      
Sbjct: 377  EL-------------EEGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQQ- 422

Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
             R+ L +K ++    S        + + +G +V   +T++      ++   G  G +HI+
Sbjct: 423  -RISLGMKQLATDPWSDI-----DAHFRIGDVVTGTVTKLTSFGAFVELKDGIDGLVHIS 476

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARII 1122
            ++++++ + V+++    K GQ VTAR+I
Sbjct: 477  QISEERIDKVKDV---LKPGQQVTARVI 501



 Score = 54.3 bits (129), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
            L ++  G I  G +K +  +G FI ++  +  GL H++++S   + +   + + GE+V+V
Sbjct: 181  LDSIQPGQIRRGVVKNITDFGAFIDLDGMD--GLLHITDMSWGRISHPSEMLKQGEEVQV 238

Query: 1512 KILKVDKEKRRISLGMKSSYFKNDADNL 1539
             I++V++EK R+SLG+K +  KN  D +
Sbjct: 239  MIIEVNREKERVSLGLKQTT-KNPWDEI 265



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 111/483 (22%), Positives = 186/483 (38%), Gaps = 108/483 (22%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGV 556
           G V  G+V A    G IV    GV A  P  H+     V+P K     VG    F+VL +
Sbjct: 101 GSVATGRVKAKVKGGLIVSI--GVDAFMPASHID----VQPPKNLDQYVGQTYDFKVLKI 154

Query: 557 KSKRIT-VTHKKTLVKS-----KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
             +R   V  ++ L++      + A+L S        I  G +  I   G F+   +G+ 
Sbjct: 155 NLERKNIVLSRRELIEEQRTNKRRALLDSIQPGQ---IRRGVVKNITDFGAFIDL-DGMD 210

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK-- 668
           G    +++       PS M   G+ V+  I+       R++L  + + T+   D++ +  
Sbjct: 211 GLLHITDMSWGRISHPSEMLKQGEEVQVMIIEVNREKERVSLG-LKQTTKNPWDEIDRKY 269

Query: 669 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM---KSVIKP---- 720
            +G+ V G V  + P    V +            E   + L H T M   K + KP    
Sbjct: 270 PVGAKVHGKVVNLVPYGAFVEI------------EPGVEGLVHITEMSWTKRITKPSELL 317

Query: 721 --GYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSD-ASHIHP-NSVVHGYVCNIIET 775
             G E D +++ +  E   + L  +    N     P D   H +P  + V G V N+   
Sbjct: 318 KVGQELDAVVLGIQKEEQKISLGLRQLEPN-----PWDMVRHNYPIGARVRGKVRNMTTY 372

Query: 776 GCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYV---------GQSVRSNILDVNSETG 824
           G F+             + +DG    +D+S T  V         G  V + +LDV+ +  
Sbjct: 373 GAFIEL----------EEGIDGMVHVSDMSWTRKVNHPSEILKKGDEVDAIVLDVDPQQQ 422

Query: 825 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
           RI+L +KQ   ++   S +  HF                          IG V+ G V +
Sbjct: 423 RISLGMKQ--LATDPWSDIDAHFR-------------------------IGDVVTGTVTK 455

Query: 885 SNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLS 937
              FG  V  ++  D  G +   Q++   ++        G  + A ++ + + ER + LS
Sbjct: 456 LTSFGAFVELKDGID--GLVHISQISEERIDKVKDVLKPGQQVTARVIKIDREERRLGLS 513

Query: 938 LKT 940
           +K 
Sbjct: 514 IKA 516



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 123/545 (22%), Positives = 216/545 (39%), Gaps = 84/545 (15%)

Query: 139 GVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVL 198
           GV+ E+ + ++V+ + G   GL  A + +D          E         VG  +  +V 
Sbjct: 25  GVITEIRQNEVVVDIGGKSEGLVPANEFID--------IGE-------LQVGSTIEVLVQ 69

Query: 199 QLD-DDKKEIGKRKIWLSLRLSLLYKGLS--LETVQEGMVLTAYVKSIEDHGYILHFGLP 255
           +L+  D   I      LS  L+   K     L    EG V T  VK+    G I+  G+ 
Sbjct: 70  KLEGKDGAPI------LSFDLAEQKKNWDNILTKFPEGSVATGRVKAKVKGGLIVSIGVD 123

Query: 256 SFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCV 307
           +F   +P       S IDV+P        G      V  I+  RK + LS   + + +  
Sbjct: 124 AF---MP------ASHIDVQPPKNLDQYVGQTYDFKVLKINLERKNIVLSRR-ELIEEQR 173

Query: 308 TKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQN------TFPTT 361
           T   + + +D + PG +    V++I + G  +       G   + H+ +      + P+ 
Sbjct: 174 TNKRRAL-LDSIQPGQIRRGVVKNITDFGAFIDL----DGMDGLLHITDMSWGRISHPSE 228

Query: 362 NWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPPS----HVKVGDIYD 412
             K    Q ++V   I+ V+     V L L     NP+   +R  P     H KV ++  
Sbjct: 229 MLK----QGEEVQVMIIEVNREKERVSLGLKQTTKNPWDEIDRKYPVGAKVHGKVVNLVP 284

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 472
               V ++ G+  L+ I  T +S    +T          K  +  K G  +   +LG + 
Sbjct: 285 YGAFVEIEPGVEGLVHI--TEMSWTKRIT----------KPSELLKVGQELDAVVLGIQK 332

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
            E   +  L+            +   G  V+GKV  + ++GA ++   G+  +  +  MS
Sbjct: 333 EEQKISLGLRQLEPNPWDMVRHNYPIGARVRGKVRNMTTYGAFIELEEGIDGMVHVSDMS 392

Query: 533 EFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
               V  P +  K G E+   VL V  + +RI++  K+ L     + + ++    D  + 
Sbjct: 393 WTRKVNHPSEILKKGDEVDAIVLDVDPQQQRISLGMKQ-LATDPWSDIDAHFRIGD--VV 449

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G +TK+   G FV   +G+ G    S++  +   +   +   GQ V  R++      RR
Sbjct: 450 TGTVTKLTSFGAFVELKDGIDGLVHISQISEERIDKVKDVLKPGQQVTARVIKIDREERR 509

Query: 650 INLSF 654
           + LS 
Sbjct: 510 LGLSI 514



 Score = 41.6 bits (96), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 72/363 (19%), Positives = 141/363 (38%), Gaps = 48/363 (13%)

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
            P +    G+ V   VM +  +    R+ L LK     +T+ +   +    Y VG+ V  +
Sbjct: 226  PSEMLKQGEEV--QVMIIEVNREKERVSLGLK-----QTTKNPWDEIDRKYPVGAKVHGK 278

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
            +  + P    ++   G  G +HITE++  K   +       K+GQ + A ++    +   
Sbjct: 279  VVNLVPYGAFVEIEPGVEGLVHITEMSWTKR--ITKPSELLKVGQELDAVVLGIQKEEQK 336

Query: 1131 KKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQ 1190
                L +L   P  +              +  IG RV G V  +    A + +   +   
Sbjct: 337  ISLGLRQLEPNPWDMV-----------RHNYPIGARVRGKVRNMTTYGAFIELEEGIDGM 385

Query: 1191 LFILDSAY-----EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1245
            + + D ++      PSE+         G  V   VL ++ +++ + L ++      +D  
Sbjct: 386  VHVSDMSWTRKVNHPSEI------LKKGDEVDAIVLDVDPQQQRISLGMKQLA---TDPW 436

Query: 1246 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1305
             DI           GD+V G ++K+ S   G  V++   + G VH +++    +      
Sbjct: 437  SDID-----AHFRIGDVVTGTVTKLTS--FGAFVELKDGIDGLVHISQISEERIDKVKDV 489

Query: 1306 YDEGQFVKCKVLEISR-------TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1358
               GQ V  +V++I R       +++   +    L +  +   + N S   TD+   G  
Sbjct: 490  LKPGQQVTARVIKIDREERRLGLSIKAANYSAEQLAAETNAFEALNRSSAGTDMMNLGDI 549

Query: 1359 LEK 1361
            L++
Sbjct: 550  LDE 552


>gi|403251339|ref|ZP_10917683.1| ribosomal protein S1 [actinobacterium SCGC AAA027-L06]
 gi|402915310|gb|EJX36289.1| ribosomal protein S1 [actinobacterium SCGC AAA027-L06]
          Length = 444

 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 183/402 (45%), Gaps = 53/402 (13%)

Query: 1140 IKPSMLTVSEIGSKLLFEEC------DVSIGQRVTGYVYKVDNEWALLTISRH----LKA 1189
            + PS + V+++GS   F         + + G  V+G V ++D E  LL I       + +
Sbjct: 1    MTPSQIAVNDVGSAEDFLAAIEGTIKNFNDGDLVSGIVVQIDREEVLLDIGYKTEGVIPS 60

Query: 1190 QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1249
            +   +    +PSEL        +G  V   VL   KE K  RL+L   +        D+ 
Sbjct: 61   RELSIRHDVDPSEL------VKVGDRVEALVL--QKEDKEGRLILSKKRAQYEQAWGDVE 112

Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
                       ++V G + +++ G  GL+V IG   +      E++ +    P  G    
Sbjct: 113  GKK-----ERDEVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLTPYIG---- 161

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
            Q V+C+++E+ +      +V LS R+ L+   S + +               +  L    
Sbjct: 162  QQVECRIIELDKNRN---NVVLSRRAFLEQSQSASRTTF-------------LNQLQKGQ 205

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +  G + ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   
Sbjct: 206  VRSGVISSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGDEVTVEVLEVDFER 264

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
            +RV ++LK +      +      +  H +  +V G++ ++  +G FI +    + GL H+
Sbjct: 265  ERVSLSLKAT-----QEDPWQAFARTHTINQVVPGEVTKLVPFGAFIKV-FEGIEGLVHI 318

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            SEL+E HV+  E + + G+K+ VKI+ +D E+RRISL +K +
Sbjct: 319  SELAERHVEIPEQVVQVGDKLFVKIIDIDLERRRISLSLKQA 360



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 162/364 (44%), Gaps = 36/364 (9%)

Query: 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKF 543
           +A EG +   +D   G +V G V+ +D    ++      + + P   +S    V P +  
Sbjct: 19  AAIEGTIKNFND---GDLVSGIVVQIDREEVLLDIGYKTEGVIPSRELSIRHDVDPSELV 75

Query: 544 KVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
           KVG  +   VL  + K  R+ ++ K+   +     +    E  D ++T G + ++ K G 
Sbjct: 76  KVGDRVEALVLQKEDKEGRLILSKKRAQYEQAWGDVEGKKE-RDEVVT-GTVIEVVKGGL 133

Query: 602 FVRFYNGVQGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 653
            V    G++GF P S  E+       P    ++GQ V+CRI+      +++  SRR  L 
Sbjct: 134 IVDI--GLRGFLPASLVEMRRVRDLTP----YIGQQVECRIIELDKNRNNVVLSRRAFLE 187

Query: 654 FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 712
                +R +  + ++ G + SGV+  +      V +   G   G +    L+  H++H +
Sbjct: 188 QSQSASRTTFLNQLQKGQVRSGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS 244

Query: 713 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYV 769
               V++ G E   ++L +D E   + LS K     + Q+ P  A +  H  N VV G V
Sbjct: 245 ---EVVEVGDEVTVEVLEVDFERERVSLSLK-----ATQEDPWQAFARTHTINQVVPGEV 296

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             ++  G F++    + G    S+  +       +   VG  +   I+D++ E  RI+LS
Sbjct: 297 TKLVPFGAFIKVFEGIEGLVHISELAERHVEIPEQVVQVGDKLFVKIIDIDLERRRISLS 356

Query: 830 LKQS 833
           LKQ+
Sbjct: 357 LKQA 360



 Score = 45.1 bits (105), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 110/248 (44%), Gaps = 31/248 (12%)

Query: 1197 AYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             + P+ L E +R      +IG+ V   ++ ++K +  + L  R F     +++   S   
Sbjct: 141  GFLPASLVEMRRVRDLTPYIGQQVECRIIELDKNRNNVVLSRRAF----LEQSQSASRTT 196

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
                + +G +  G IS I++   G  V +G  + G VH +EL    +  P    + G  V
Sbjct: 197  FLNQLQKGQVRSGVISSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGDEV 253

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VLE+         V LSL+++ +                P +   +   +  N +V 
Sbjct: 254  TVEVLEVDFERE---RVSLSLKATQE---------------DPWQAFARTHTI--NQVVP 293

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G FI +   ++  V +S L++ +VE PE+   +G  +  +++ ++   +R+
Sbjct: 294  GEVTKLVPFGAFIKVFEGIEGLVHISELAERHVEIPEQVVQVGDKLFVKIIDIDLERRRI 353

Query: 1433 EVTLKTSD 1440
             ++LK ++
Sbjct: 354  SLSLKQAN 361



 Score = 44.3 bits (103), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 147/370 (39%), Gaps = 36/370 (9%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI  +     D  +  G + +I++    +      +G  P  EL +    +PS +  VG 
Sbjct: 20  AIEGTIKNFNDGDLVSGIVVQIDREEVLLDIGYKTEGVIPSRELSIRHDVDPSELVKVGD 79

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV---KLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  ++       R+ LS        +  D+    +   +V+G V  V    ++V +  
Sbjct: 80  RVEALVLQKEDKEGRLILSKKRAQYEQAWGDVEGKKERDEVVTGTVIEVVKGGLIVDIGL 139

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINS-A 749
           +G+    +P    A  +E   V       G + + +++ LD   +N++LS +  L  S +
Sbjct: 140 RGF----LP----ASLVEMRRVRDLTPYIGQQVECRIIELDKNRNNVVLSRRAFLEQSQS 191

Query: 750 QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
               +  + +    V  G + +I+  G FV  LG + G    S+         S+   VG
Sbjct: 192 ASRTTFLNQLQKGQVRSGVISSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 250

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +L+V+ E  R++LSLK +      A F + H + +     +      G+ +K  
Sbjct: 251 DEVTVEVLEVDFERERVSLSLKATQEDPWQA-FARTHTINQVVPGEVTKLVPFGAFIKVF 309

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAK 929
           EG      IEG VH       +    E         H ++    V+ G  +   I+D+  
Sbjct: 310 EG------IEGLVH-------ISELAER--------HVEIPEQVVQVGDKLFVKIIDIDL 348

Query: 930 AERLVDLSLK 939
             R + LSLK
Sbjct: 349 ERRRISLSLK 358


>gi|297243679|ref|ZP_06927610.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
 gi|415709775|ref|ZP_11463354.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
 gi|296888430|gb|EFH27171.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
 gi|388055777|gb|EIK78662.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
          Length = 500

 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 183/394 (46%), Gaps = 47/394 (11%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            + +++IG++  F +  D +I     G  V G V K+D++  LL I    +  +     + 
Sbjct: 11   VAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI----PSR 66

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
            E S  ++      +    T   L + KE K  RL+L   +        DI        I 
Sbjct: 67   ELSIKKDVDPDDVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEK------IK 120

Query: 1259 EGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVL 1317
            + D IV G + + + G  GL+V IG   +      E++ +    P  G    Q +K K+L
Sbjct: 121  DADGIVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QKIKAKIL 174

Query: 1318 EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1377
            E+ +      +V LS R  L+   S                   +  L    I +G V +
Sbjct: 175  ELDKNRN---NVVLSRRQFLEETQSEVRETF-------------LSQLKKGQIREGVVSS 218

Query: 1378 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437
            + + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R+ ++LK
Sbjct: 219  IVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK 277

Query: 1438 TSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496
             +      +      +  HV G +V G++ ++  +G+FI++E+  + GL H+SEL+  HV
Sbjct: 278  AT-----QEDPWQRFARTHVPGQVVKGKVTKIVQFGVFISVED-GIEGLVHISELANRHV 331

Query: 1497 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +N ET+ +A E V VK++ VD ++RRISL +K +
Sbjct: 332  ENPETVVKANEDVFVKVIDVDLDRRRISLSLKQA 365



 Score = 47.8 bits (112), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 112/254 (44%), Gaps = 21/254 (8%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------ 641
           I  G + +  K G  V    G++GF P S + +    + S   ++GQ +K +I+      
Sbjct: 125 IVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP--YIGQKIKAKILELDKNR 180

Query: 642 SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
           +++  SRR  L       R +    +K G +  GVV  +      V +   G   G I  
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL---GGVDGLIHV 237

Query: 702 EHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHI 759
             L+  H++H +    V+K G +   ++L +D +   + LS K +  +  Q+     +H+
Sbjct: 238 SELSWKHIDHPS---EVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFAR--THV 292

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
            P  VV G V  I++ G F+     + G    S+  +    +        + V   ++DV
Sbjct: 293 -PGQVVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEDVFVKVIDV 351

Query: 820 NSETGRITLSLKQS 833
           + +  RI+LSLKQ+
Sbjct: 352 DLDRRRISLSLKQA 365



 Score = 45.1 bits (105), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQL-PSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           ++L LD   +N++LS +  L  +  ++  +  S +    +  G V +I+  G FV  LG 
Sbjct: 172 KILELDKNRNNVVLSRRQFLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVD-LGG 230

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+         S+   VG  V   +LDV+ +  RI+LSLK +        F +
Sbjct: 231 VDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLK-ATQEDPWQRFAR 289

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
            H                          + G V++GKV +   FGV +S E+   + G +
Sbjct: 290 TH--------------------------VPGQVVKGKVTKIVQFGVFISVEDG--IEGLV 321

Query: 905 THHQLAGATVESGSVIQAA-------ILDVAKAERLVDLSLK 939
              +LA   VE+   +  A       ++DV    R + LSLK
Sbjct: 322 HISELANRHVENPETVVKANEDVFVKVIDVDLDRRRISLSLK 363



 Score = 44.7 bits (104), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 113/259 (43%), Gaps = 37/259 (14%)

Query: 1197 AYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             + P+ L E +R      +IG+ +   +L ++K +  + L  R F +       +  ++ 
Sbjct: 146  GFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLE-------ETQSEV 198

Query: 1253 MQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
             +TF+ +   G I  G +S I++   G  V +G  + G +H +EL    +  P      G
Sbjct: 199  RETFLSQLKKGQIREGVVSSIVNF--GAFVDLGG-VDGLIHVSELSWKHIDHPSEVVKVG 255

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
              V  +VL++         + LSL+++ +                P +   +     P  
Sbjct: 256  DKVTVEVLDVDLDRE---RISLSLKATQE---------------DPWQRFARTH--VPGQ 295

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +V+G V  +   G FI +   ++  V +S L++ +VE+PE      + V  +V+ V+   
Sbjct: 296  VVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEDVFVKVIDVDLDR 355

Query: 1430 KRVEVTLKTSDSRTASQSE 1448
            +R+ ++LK ++      SE
Sbjct: 356  RRISLSLKQANEAVDPNSE 374


>gi|410459394|ref|ZP_11313145.1| 30S ribosomal protein S1 [Bacillus azotoformans LMG 9581]
 gi|409930370|gb|EKN67371.1| 30S ribosomal protein S1 [Bacillus azotoformans LMG 9581]
          Length = 377

 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 174/374 (46%), Gaps = 55/374 (14%)

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
            +IG  V G V KV+++  L+ I        F ++     SEL       HI KA  G V+
Sbjct: 15   AIGDTVGGKVTKVEDKHVLVDIG-------FKVEGIVPISELS----SLHIEKA--GDVV 61

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
             +N +  L  + +   +  +S K VD  N  D +      G++    +  ++ G  GLVV
Sbjct: 62   KVNDDLTLKVIKVEEEEIILSKKAVDAENAWDELVNKFETGEVFEAEVKDVVKG--GLVV 119

Query: 1280 QIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
             IG     P      HF E          S Y +G+ +  KV+EI R       V LS R
Sbjct: 120  DIGVRGFIPASLVERHFVE--------DFSEY-KGRNISLKVVEIDRE---KNRVILSHR 167

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + LD   ++                + I+ L    +++G V+ +   G F+ +   +D  
Sbjct: 168  AVLDDEIASQKQ-------------QTIDALKVGQVLEGTVQRLADFGVFVDIG-GIDGL 213

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S L+  +V+ P      G+ V  +VLS++  ++R+ +++K +           +L  
Sbjct: 214  VHISQLAHQHVDKPADVVAEGQKVKVKVLSIDKDNERISLSIKETLPGPW------DLIE 267

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
               GD V G +KR+ ++G F+ +   N+ GL H+S++S  H+     + + GEKVKVKIL
Sbjct: 268  YKRGDEVSGTVKRLVNFGAFVEV-APNVEGLVHISQISNRHIATPHEVLKEGEKVKVKIL 326

Query: 1515 KVDKEKRRISLGMK 1528
             ++KE +RISL +K
Sbjct: 327  DINKENQRISLSIK 340



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 69/117 (58%), Gaps = 4/117 (3%)

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            G+ ++ +V+ ++    RV ++ +   D   ASQ +   +  L VG ++ G ++R+  +G+
Sbjct: 145  GRNISLKVVEIDREKNRVILSHRAVLDDEIASQKQ-QTIDALKVGQVLEGTVQRLADFGV 203

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            F+ I   +  GL H+S+L+  HVD    +   G+KVKVK+L +DK+  RISL +K +
Sbjct: 204  FVDIGGID--GLVHISQLAHQHVDKPADVVAEGQKVKVKVLSIDKDNERISLSIKET 258



 Score = 63.2 bits (152), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 141/341 (41%), Gaps = 23/341 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  V GKV  V+    +V     V+ + P+  +S   I K G   KV  +L  +V+ V+ 
Sbjct: 17  GDTVGGKVTKVEDKHVLVDIGFKVEGIVPISELSSLHIEKAGDVVKVNDDLTLKVIKVEE 76

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
           + I ++ K    ++    L +  E  +  +    +  + K G  V    GV+GF P S L
Sbjct: 77  EEIILSKKAVDAENAWDELVNKFETGE--VFEAEVKDVVKGGLVVDI--GVRGFIPAS-L 131

Query: 619 GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
                 E  S Y  G+ +  +++      + +  S R  L   +   +    D +K+G +
Sbjct: 132 VERHFVEDFSEYK-GRNISLKVVEIDREKNRVILSHRAVLDDEIASQKQQTIDALKVGQV 190

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
           + G V  +    V V +   G   G +    LA   +H      V+  G +   ++L +D
Sbjct: 191 LEGTVQRLADFGVFVDI---GGIDGLVHISQLAH--QHVDKPADVVAEGQKVKVKVLSID 245

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
            ++  + LS K +L       P D         V G V  ++  G FV     + G    
Sbjct: 246 KDNERISLSIKETLPG-----PWDLIEYKRGDEVSGTVKRLVNFGAFVEVAPNVEGLVHI 300

Query: 792 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           S+  +   A   +    G+ V+  ILD+N E  RI+LS+K+
Sbjct: 301 SQISNRHIATPHEVLKEGEKVKVKILDINKENQRISLSIKE 341



 Score = 41.2 bits (95), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 105/261 (40%), Gaps = 30/261 (11%)

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY--HVGQVVKCRIMSSIPASR 648
           G +TK+E     V     V+G  P SEL        SS++    G VVK     ++   +
Sbjct: 22  GKVTKVEDKHVLVDIGFKVEGIVPISEL--------SSLHIEKAGDVVKVNDDLTLKVIK 73

Query: 649 ----RINLSFMMKPTRVSEDDLV---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
                I LS        + D+LV   + G +    V  V    +VV +  +G+   ++  
Sbjct: 74  VEEEEIILSKKAVDAENAWDELVNKFETGEVFEAEVKDVVKGGLVVDIGVRGFIPASLVE 133

Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL---INSAQQLPSDASH 758
            H  +           +K       ++ +D E + ++LS +  L   I S +Q   DA  
Sbjct: 134 RHFVEDFSEYKGRNISLK-------VVEIDREKNRVILSHRAVLDDEIASQKQQTIDALK 186

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +    V+ G V  + + G FV  +G + G    S+         +     GQ V+  +L 
Sbjct: 187 V--GQVLEGTVQRLADFGVFVD-IGGIDGLVHISQLAHQHVDKPADVVAEGQKVKVKVLS 243

Query: 819 VNSETGRITLSLKQSCCSSTD 839
           ++ +  RI+LS+K++     D
Sbjct: 244 IDKDNERISLSIKETLPGPWD 264


>gi|380302401|ref|ZP_09852094.1| 30S ribosomal protein S1 [Brachybacterium squillarum M-6-3]
          Length = 494

 Score = 96.3 bits (238), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 184/391 (47%), Gaps = 54/391 (13%)

Query: 1151 GSKLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPS 1201
            G+  L    D +I     G  V G V KVD++  LL I       + ++   +     P 
Sbjct: 16   GADELMAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPD 75

Query: 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD 1261
            E+ E      +G  +   VL   KE K  RL+L   +        + +   ++    +  
Sbjct: 76   EVVE------VGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIEQIKEDEG 122

Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISR 1321
            +V GR+ +++ G  GL+V IG   +      E++ +    P  G    Q ++ K++E+ +
Sbjct: 123  VVTGRVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEAKIIELDK 176

Query: 1322 TVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSK 1381
                  +V LS R+ L+   S   SD              ++ L    + +G V ++ + 
Sbjct: 177  NRN---NVVLSRRAYLEETQSAVRSDF-------------LQTLQKGQVREGAVSSIVNF 220

Query: 1382 GCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK    
Sbjct: 221  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLDVDMDRERVSLSLK---- 275

Query: 1442 RTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
              A+Q +   L +  H +G++V G++ ++  +G F+ +E+  + GL H+SEL++ HVD  
Sbjct: 276  --ATQEDPWQLFARTHAIGEVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAQRHVDLP 332

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E +    + V VK++ +D E+RRISL +K +
Sbjct: 333  EQVVTVDQDVFVKVIDIDLERRRISLSLKQA 363



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 2/159 (1%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   VL 
Sbjct: 204 LQKGQVREGAVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLD 262

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           V   R  V+      +     L +   A   ++  G +TK+   G FVR  +G++G    
Sbjct: 263 VDMDRERVSLSLKATQEDPWQLFARTHAIGEVVP-GKVTKLVPFGAFVRVEDGIEGLVHI 321

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           SEL       P  +  V Q V  +++      RRI+LS 
Sbjct: 322 SELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSL 360



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 149/349 (42%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEIEALVLQKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEQIKE--DEGVVTGRVIEVVKGGLIVDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSDFLQTLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  G V  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 206 KGQVREGAVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVKVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 260 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHAIGEVVPGKVTKLVPFGAFVRVEDGI 315

Query: 786 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+    +  DL  +   V Q V   ++D++ E  RI+LSLKQ+
Sbjct: 316 EGLVHISELAQ-RHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQA 363



 Score = 45.1 bits (105), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 141/370 (38%), Gaps = 56/370 (15%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  I  G + K++     +      +G  P  EL +     P  +  VG  ++  ++   
Sbjct: 33  DGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEIEALVLQKE 92

Query: 645 PASRRINLSFMMKP--------TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
               R+ LS              ++ ED+      +V+G V  V    ++V +  +G+  
Sbjct: 93  DKEGRLILSKKRAQYERAWGTIEQIKEDE-----GVVTGRVIEVVKGGLIVDIGLRGFLP 147

Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD 755
            ++        +E   V       G E + +++ LD   +N++LS +  L  +   + SD
Sbjct: 148 ASL--------VEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSD 199

Query: 756 -ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814
               +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V+ 
Sbjct: 200 FLQTLQKGQVREGAVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQKVKV 258

Query: 815 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874
            +LDV+ +  R++LSLK +                +E    L +  H            I
Sbjct: 259 EVLDVDMDRERVSLSLKAT----------------QEDPWQLFARTH-----------AI 291

Query: 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAK 929
           G V+ GKV +   FG  V  E+  +    I+     H  L    V     +   ++D+  
Sbjct: 292 GEVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVTVDQDVFVKVIDIDL 351

Query: 930 AERLVDLSLK 939
             R + LSLK
Sbjct: 352 ERRRISLSLK 361



 Score = 44.7 bits (104), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 114/245 (46%), Gaps = 31/245 (12%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R    + ++G+ +   ++ ++K +  + L  R +   + +    + +D +QT
Sbjct: 147  PASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAY---LEETQSAVRSDFLQT 203

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
             + +G +  G +S I++   G  V +G  + G VH +EL    +  P    + GQ VK +
Sbjct: 204  -LQKGQVREGAVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVKVE 259

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            VL++         V LSL+++ +                P +   +   +    +V G V
Sbjct: 260  VLDVDMDRE---RVSLSLKATQE---------------DPWQLFARTHAIGE--VVPGKV 299

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
              +   G F+ +   ++  V +S L+  +V+ PE+   + + V  +V+ ++   +R+ ++
Sbjct: 300  TKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLS 359

Query: 1436 LKTSD 1440
            LK ++
Sbjct: 360  LKQAN 364



 Score = 43.9 bits (102), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 60/294 (20%)

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
           G +V G V  V  + V++ +   GY ++G IP+  L+  ++H      V++ G E + L+
Sbjct: 34  GDIVEGTVVKVDHDEVLLDI---GYKTEGVIPSRELS--IKHDVNPDEVVEVGDEIEALV 88

Query: 729 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           +  +++   L+LS K +    A    +Q+  D        VV G V  +++ G  V    
Sbjct: 89  LQKEDKEGRLILSKKRAQYERAWGTIEQIKED------EGVVTGRVIEVVKGGLIVDI-- 140

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDA 840
            L GF P S     +  DL    YVGQ + + I++++     + LS +   +   S+  +
Sbjct: 141 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRS 198

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            F+Q           LQ                 G V EG V    +FG  V       V
Sbjct: 199 DFLQ----------TLQK----------------GQVREGAVSSIVNFGAFVDL---GGV 229

Query: 901 YGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
            G +   +L+          VE G  ++  +LDV      V LSLK    D ++
Sbjct: 230 DGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLDVDMDRERVSLSLKATQEDPWQ 283


>gi|430750092|ref|YP_007213000.1| 30S ribosomal protein S1 [Thermobacillus composti KWC4]
 gi|430734057|gb|AGA58002.1| ribosomal protein S1 [Thermobacillus composti KWC4]
          Length = 411

 Score = 96.3 bits (238), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 179/376 (47%), Gaps = 55/376 (14%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQ-----RRFHIGKAVTG 1218
            G  V G V K+++  A +++        +  D      EL   Q         +G+ +  
Sbjct: 38   GDIVKGTVIKIEDNQAYVSLG-------YKYDGVIPLRELSAVQLDNAADAVQVGQELEL 90

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1276
             V+SI+ +K+  RLVL       S + VD     D +Q    +G+++   ++ ++ G  G
Sbjct: 91   KVISIDDDKE--RLVL-------SKRQVDAGKAWDRLQEQFEKGEVLEVTVADVVKG--G 139

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            LVV +G  + G +  + ++   V D  S Y +GQ ++ K+ E+ R    T  V LS +  
Sbjct: 140  LVVDVG--VRGFIPASMVERHYVED-FSSY-KGQTLRVKIKELDRE---TNKVILSAKEV 192

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
            L+     N   +             +E L P  I++G V+ +T  G F+ +   +D  V 
Sbjct: 193  LEEEYEANKRRI-------------MESLEPGQIIEGTVQRLTPFGAFVDIG-GIDGLVH 238

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS--N 1454
            +S L+  +V  P      G+ V  +VL V+P + ++ +++K      A+Q     L+   
Sbjct: 239  VSELAWEHVAHPRDVVSEGQQVKVKVLKVDPEAGKISLSIK------AAQPGPWELAADK 292

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
             H GDIV G +KR+ S+G F+ +    + GL H+S+++  H+     + + G++VK K+L
Sbjct: 293  FHNGDIVTGTVKRIVSFGAFVEV-APGVEGLVHISQIAHRHIATPHEVLKEGQEVKAKVL 351

Query: 1515 KVDKEKRRISLGMKSS 1530
              +  ++RISL +K +
Sbjct: 352  DFNPAEKRISLSIKET 367



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 148/357 (41%), Gaps = 43/357 (12%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G +VKG VI ++   A V        + PL  +S  ++       +VG EL  +V+ 
Sbjct: 35  LKKGDIVKGTVIKIEDNQAYVSLGYKYDGVIPLRELSAVQLDNAADAVQVGQELELKVIS 94

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 607
           +         K+ LV SK  +     +A DRL        +    +  + K G  V    
Sbjct: 95  IDD------DKERLVLSKRQV--DAGKAWDRLQEQFEKGEVLEVTVADVVKGGLVVDV-- 144

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPT 659
           GV+GF P S +      E  S Y  GQ ++ +I      + ++ LS        +     
Sbjct: 145 GVRGFIPASMVERHY-VEDFSSYK-GQTLRVKIKELDRETNKVILSAKEVLEEEYEANKR 202

Query: 660 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
           R+ E   ++ G ++ G V  +TP    V +   G   G +    LA   EH    + V+ 
Sbjct: 203 RIMES--LEPGQIIEGTVQRLTPFGAFVDI---GGIDGLVHVSELA--WEHVAHPRDVVS 255

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETG 776
            G +   ++L +D E+  + LS     I +AQ  P +  A   H   +V G V  I+  G
Sbjct: 256 EGQQVKVKVLKVDPEAGKISLS-----IKAAQPGPWELAADKFHNGDIVTGTVKRIVSFG 310

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            FV     + G    S+      A   +    GQ V++ +LD N    RI+LS+K++
Sbjct: 311 AFVEVAPGVEGLVHISQIAHRHIATPHEVLKEGQEVKAKVLDFNPAEKRISLSIKET 367



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 117/284 (41%), Gaps = 48/284 (16%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHL-ADHLEHATVMKSVIKPGYEF 724
           +K G +V G V  +  N   V +   GY   G IP   L A  L++A      ++ G E 
Sbjct: 35  LKKGDIVKGTVIKIEDNQAYVSL---GYKYDGVIPLRELSAVQLDNAA---DAVQVGQEL 88

Query: 725 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           + +++ +D++   L+LS +   +++ +             V+   V ++++ G  V    
Sbjct: 89  ELKVISIDDDKERLVLSKRQ--VDAGKAWDRLQEQFEKGEVLEVTVADVVKGGLVVDVGV 146

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
           R  GF P S        D S   Y GQ++R  I +++ ET ++ LS K+           
Sbjct: 147 R--GFIPASMVERHYVEDFSS--YKGQTLRVKIKELDRETNKVILSAKE----------- 191

Query: 844 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
               +LEE+        +  ++ + +E    G +IEG V     FG   +F +   + G 
Sbjct: 192 ----VLEEE--------YEANKRRIMESLEPGQIIEGTVQRLTPFG---AFVDIGGIDGL 236

Query: 904 ITHHQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLKT 940
           +   +LA          V  G  ++  +L V      + LS+K 
Sbjct: 237 VHVSELAWEHVAHPRDVVSEGQQVKVKVLKVDPEAGKISLSIKA 280


>gi|15614199|ref|NP_242502.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
 gi|10174253|dbj|BAB05355.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
          Length = 383

 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 179/369 (48%), Gaps = 43/369 (11%)

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
            S+G  V+G V KV+++ A + +        F +D     SEL       H+ K     VL
Sbjct: 16   SVGDVVSGKVTKVEDKQAFVDVG-------FKVDGIIPISELS----SLHVEK--VSDVL 62

Query: 1222 SINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            S   E +L  L +   +  +S + V      + +Q  +  G+++   ++ ++ G  GLVV
Sbjct: 63   SEGDELELKVLKVEDDELILSKRAVQAEKAWETLQAALDSGEVIEAEVADVVKG--GLVV 120

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             +G  + G +  + ++   V D  S Y +G+ ++ KV+E+ +         LS R+ LD 
Sbjct: 121  DLG--VRGFIPASLVERHYVED-FSDY-KGRTLRLKVVELDKEANKLI---LSQRAVLDE 173

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
                         +   K  E +  L P  +V+G V+ +T  G F+ +   +D  V +S 
Sbjct: 174  -------------EVEAKKKEVLASLQPGDVVEGTVQRLTDFGAFVDVG-GVDGLVHISQ 219

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1459
            L+   VE+P +    G  V  +VLSV+P S+RV +++K +      Q E      +  GD
Sbjct: 220  LAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIKETLPGPWEQVE----GTIQPGD 275

Query: 1460 IVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKE 1519
            ++ G +KR+ S+G F+ +    + GL H+S+++  H+     +   GE+V+ K+L V+  
Sbjct: 276  VIEGTVKRLVSFGAFVEV-APGVEGLVHISQIANRHIGTPGEVLSEGERVQAKVLDVNIS 334

Query: 1520 KRRISLGMK 1528
            ++RISL ++
Sbjct: 335  EKRISLSIR 343



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 141/341 (41%), Gaps = 21/341 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV GKV  V+   A V     V  + P+  +S   + K       G EL  +VL V+ 
Sbjct: 18  GDVVSGKVTKVEDKQAFVDVGFKVDGIIPISELSSLHVEKVSDVLSEGDELELKVLKVED 77

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
             + ++ +    +     L +  ++ +  +    +  + K G  V    GV+GF P S L
Sbjct: 78  DELILSKRAVQAEKAWETLQAALDSGE--VIEAEVADVVKGGLVVDL--GVRGFIPAS-L 132

Query: 619 GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
                 E  S Y  G+ ++ +++      + +  S+R  L   ++  +      ++ G +
Sbjct: 133 VERHYVEDFSDYK-GRTLRLKVVELDKEANKLILSQRAVLDEEVEAKKKEVLASLQPGDV 191

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
           V G V  +T     V V   G   G +    LA H         V+K G     ++L +D
Sbjct: 192 VEGTVQRLTDFGAFVDV---GGVDGLVHISQLAHH--RVETPAEVVKEGDAVKVKVLSVD 246

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
            +S  + LS K +L    +Q+      I P  V+ G V  ++  G FV     + G    
Sbjct: 247 PDSERVSLSIKETLPGPWEQVEG---TIQPGDVIEGTVKRLVSFGAFVEVAPGVEGLVHI 303

Query: 792 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           S+  +       +    G+ V++ +LDVN    RI+LS+++
Sbjct: 304 SQIANRHIGTPGEVLSEGERVQAKVLDVNISEKRISLSIRE 344



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
            L++L  GD+V G ++R+  +G F+ +   +  GL H+S+L+   V+    + + G+ VKV
Sbjct: 183  LASLQPGDVVEGTVQRLTDFGAFVDVGGVD--GLVHISQLAHHRVETPAEVVKEGDAVKV 240

Query: 1512 KILKVDKEKRRISLGMKSS 1530
            K+L VD +  R+SL +K +
Sbjct: 241  KVLSVDPDSERVSLSIKET 259



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 128/284 (45%), Gaps = 37/284 (13%)

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
            FI  S  E   +++F    + G+ +   V+ ++KE    +L+L   Q  + D+ V+    
Sbjct: 127  FIPASLVERHYVEDFSD--YKGRTLRLKVVELDKEAN--KLILS--QRAVLDEEVEAKKK 180

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             +   +  GD+V G + ++     G  V +G  + G VH ++L +  V  P     EG  
Sbjct: 181  EVLASLQPGDVVEGTVQRLTDF--GAFVDVG-GVDGLVHISQLAHHRVETPAEVVKEGDA 237

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            VK KVL +      +  V LS++ +L G               P + +E    + P  ++
Sbjct: 238  VKVKVLSVDPD---SERVSLSIKETLPG---------------PWEQVEGT--IQPGDVI 277

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G VK + S G F+ ++  ++  V +S +++ ++ +P +    G+ V  +VL V    KR
Sbjct: 278  EGTVKRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPGEVLSEGERVQAKVLDVNISEKR 337

Query: 1432 VEVTLK--------TSDSRTASQSEINNLSNLHVGDIVIGQIKR 1467
            + ++++            R   +S     S   +GD++  ++K+
Sbjct: 338  ISLSIRELLDDAGSNQSDREVYESTNEESSGFSLGDMIGDELKK 381



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++PG VV+G V  +  FGA V   GGV  L  +  ++   +  P +  K G  +  +V
Sbjct: 184 ASLQPGDVVEGTVQRLTDFGAFVDV-GGVDGLVHISQLAHHRVETPAEVVKEGDAVKVKV 242

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   S+R++++ K+TL      +  +        +  G + ++   G FV    GV+G
Sbjct: 243 LSVDPDSERVSLSIKETLPGPWEQVEGTIQPGD---VIEGTVKRLVSFGAFVEVAPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++       P  +   G+ V+ +++    + +RI+LS 
Sbjct: 300 LVHISQIANRHIGTPGEVLSEGERVQAKVLDVNISEKRISLSI 342



 Score = 44.3 bits (103), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 112/279 (40%), Gaps = 46/279 (16%)

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLADHLEHATVMKSVIKPGYEFDQL 727
           +G +VSG V  V      V V   G+   G IP   L+    H   +  V+  G E  +L
Sbjct: 17  VGDVVSGKVTKVEDKQAFVDV---GFKVDGIIPISELSSL--HVEKVSDVLSEGDEL-EL 70

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
            VL  E   L+LS +   + + +   +  + +    V+   V ++++ G  V    R  G
Sbjct: 71  KVLKVEDDELILSKRA--VQAEKAWETLQAALDSGEVIEAEVADVVKGGLVVDLGVR--G 126

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 847
           F P S        D S   Y G+++R  +++++ E  ++ LS +       +A       
Sbjct: 127 FIPASLVERHYVEDFSD--YKGRTLRLKVVELDKEANKLILSQRAVLDEEVEAKK----- 179

Query: 848 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 907
             +E +A LQ                 G V+EG V    DFG   +F +   V G +   
Sbjct: 180 --KEVLASLQP----------------GDVVEGTVQRLTDFG---AFVDVGGVDGLVHIS 218

Query: 908 QLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
           QLA   VE+       G  ++  +L V      V LS+K
Sbjct: 219 QLAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIK 257



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
             V IS +A   V    +  KEG  V+V++L         +  +K +           ++
Sbjct: 213 GLVHISQLAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIKETLPGPWEQVEGTIQ 272

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
           PG V++G V  + SFGA V+   GV+ L  +  ++   I  PG+    G  +  +VL V 
Sbjct: 273 PGDVIEGTVKRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPGEVLSEGERVQAKVLDVN 332

Query: 558 --SKRITVTHKKTL 569
              KRI+++ ++ L
Sbjct: 333 ISEKRISLSIRELL 346


>gi|297626694|ref|YP_003688457.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp.
            shermanii CIRM-BIA1]
 gi|296922459|emb|CBL57032.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp.
            shermanii CIRM-BIA1]
          Length = 484

 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 187/400 (46%), Gaps = 55/400 (13%)

Query: 1143 SMLTVSEIGSKLLFEEC-DVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + V +IGS   FE   D +I     G  V G V KVD +  LL I       + ++  
Sbjct: 9    NQVAVDDIGSAEAFEAAVDSTIKYFNDGDIVKGTVVKVDRDEVLLDIGYKTEGVIPSKEL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+        +G  +    L   KE K  RL+L   +        + +   
Sbjct: 69   SIKHDVDPFEV------VSVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGT 115

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            ++    E  +V G + +++ G  GL+V IG   +      E++ +    P  G    Q +
Sbjct: 116  IEKIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEL 169

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            + K++E+ +      +V LS R+ L+   S    +              ++ L    I +
Sbjct: 170  EAKIIELDKNRN---NVVLSRRAWLEQTQSETRHNF-------------LQQLQKGQIRK 213

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV
Sbjct: 214  GIVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMERERV 272

Query: 1433 EVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
             ++LK      A+Q +   L +  H +G+IV G++ ++  +G F+ +E   + GL HVSE
Sbjct: 273  SLSLK------ATQEDPWQLFARTHQIGEIVPGKVTKLVPFGAFVRVEE-GIEGLVHVSE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+E HV+  E +   G++V VKI+ +D E+RRISL +K +
Sbjct: 326  LAERHVEIPEQVVSVGDEVLVKIIDIDLERRRISLSLKQA 365



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 156/366 (42%), Gaps = 28/366 (7%)

Query: 480 ILKASAFEGLV-FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
           I  A AFE  V  T      G +VKG V+ VD    ++      + + P   +S    V 
Sbjct: 16  IGSAEAFEAAVDSTIKYFNDGDIVKGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVD 75

Query: 539 PGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           P +   VG E+   V   + K  R+ ++ K+   +     +    E  D ++T G + ++
Sbjct: 76  PFEVVSVGDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEV 133

Query: 597 EKHGCFVRFYNGVQGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASR 648
            K G  V    G++GF P S  E+      +P    +VGQ ++ +I+      +++  SR
Sbjct: 134 VKGGLIVDI--GLRGFLPASLVEMRRVRDLQP----YVGQELEAKIIELDKNRNNVVLSR 187

Query: 649 RINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DH 707
           R  L      TR +    ++ G +  G+V  +      V +   G   G +    L+  H
Sbjct: 188 RAWLEQTQSETRHNFLQQLQKGQIRKGIVSSIVNFGAFVDL---GGVDGLVHVSELSWKH 244

Query: 708 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 767
           ++H + +  V +P     ++L +D E   + LS K +      QL +    I    +V G
Sbjct: 245 IDHPSEVVEVGQPVTV--EVLDVDMERERVSLSLKATQ-EDPWQLFARTHQI--GEIVPG 299

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
            V  ++  G FVR    + G    S+  +       +   VG  V   I+D++ E  RI+
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHVSELAERHVEIPEQVVSVGDEVLVKIIDIDLERRRIS 359

Query: 828 LSLKQS 833
           LSLKQ+
Sbjct: 360 LSLKQA 365



 Score = 45.1 bits (105), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 110/245 (44%), Gaps = 31/245 (12%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R    + ++G+ +   ++ ++K +  + L  R + +    +T      N   
Sbjct: 149  PASLVEMRRVRDLQPYVGQELEAKIIELDKNRNNVVLSRRAWLEQTQSET----RHNFLQ 204

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
             + +G I  G +S I++   G  V +G  + G VH +EL    +  P    + GQ V  +
Sbjct: 205  QLQKGQIRKGIVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVE 261

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            VL++         V LSL+++ +                P +   +   +    IV G V
Sbjct: 262  VLDVDMERE---RVSLSLKATQE---------------DPWQLFARTHQIGE--IVPGKV 301

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
              +   G F+ +   ++  V +S L++ +VE PE+   +G  V  +++ ++   +R+ ++
Sbjct: 302  TKLVPFGAFVRVEEGIEGLVHVSELAERHVEIPEQVVSVGDEVLVKIIDIDLERRRISLS 361

Query: 1436 LKTSD 1440
            LK ++
Sbjct: 362  LKQAN 366


>gi|304406967|ref|ZP_07388621.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304343954|gb|EFM09794.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 407

 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 169/367 (46%), Gaps = 37/367 (10%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G + K+++  A  T+S   K    I        +L        +G+ V   V+SI
Sbjct: 30   GDTVKGTIVKIEDNQA--TVSLGYKYDGVIPLRELSSVQLDNAATAVQVGQEVELKVVSI 87

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            + EK+ L L  R      + + +    DN + F    D+V   + K     GGLV  +G 
Sbjct: 88   DDEKEKLVLSKRAIDGEKAWEELQAKFDNSEAF----DVVIADVVK-----GGLVADVG- 137

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
             + G +  + ++   V D  S Y +G+ +K KV EI R       V LS +  L+     
Sbjct: 138  -VRGFIPASMVERHFVED-FSDY-KGRSIKVKVKEIDRE---NNKVILSAKEVLEADFEA 191

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
            N   +             I  L P   ++G V+ +T  G FI +   +D  V +S +S  
Sbjct: 192  NKQKI-------------IASLEPGQELEGTVQRLTPFGAFIDIG-GIDGLVHVSEISWQ 237

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
            +V  P+     G+ V  +VL V+P + ++ +++K +       +    +++ + GDIV G
Sbjct: 238  HVAHPKDAVSEGQSVRVKVLKVDPAAGKISLSMKAAQPGPWDSA----INSFNTGDIVTG 293

Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
             ++R+  +G FI I    + GL H+S+++  HV     + + G++VK KIL  +  ++R+
Sbjct: 294  TVRRIVDFGAFIEI-APGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRV 352

Query: 1524 SLGMKSS 1530
            SL +K +
Sbjct: 353  SLSIKET 359



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 21/165 (12%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  + IG  + G VH +E+    V+ P     EGQ V+ KVL++         + LS+++
Sbjct: 217  GAFIDIG-GIDGLVHVSEISWQHVAHPKDAVSEGQSVRVKVLKVDPAAG---KISLSMKA 272

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            +                  PG     I   +   IV G V+ +   G FI ++  ++  V
Sbjct: 273  A-----------------QPGPWDSAINSFNTGDIVTGTVRRIVDFGAFIEIAPGVEGLV 315

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S ++  +V +P +    G+ V  ++L   P  KRV +++K ++
Sbjct: 316  HISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVSLSIKETE 360



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++PG  ++G V  +  FGA +   GG+  L  +  +S   +  P      G  +  +V
Sbjct: 198 ASLEPGQELEGTVQRLTPFGAFIDI-GGIDGLVHVSEISWQHVAHPKDAVSEGQSVRVKV 256

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   + +I+++ K        + ++S+   T  ++T G + +I   G F+    GV+G
Sbjct: 257 LKVDPAAGKISLSMKAAQPGPWDSAINSFN--TGDIVT-GTVRRIVDFGAFIEIAPGVEG 313

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++       P  +   GQ VK +I+   PA +R++LS 
Sbjct: 314 LVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVSLSI 356



 Score = 49.3 bits (116), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 141/364 (38%), Gaps = 56/364 (15%)

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G I KIE +   V       G  P  EL        ++   VGQ V+ +++S      ++
Sbjct: 35  GTIVKIEDNQATVSLGYKYDGVIPLRELSSVQLDNAATAVQVGQEVELKVVSIDDEKEKL 94

Query: 651 NLS-FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL- 708
            LS   +   +  E+   K  +  S   DVV  + V   ++A    +G IP   +  H  
Sbjct: 95  VLSKRAIDGEKAWEELQAKFDN--SEAFDVVIADVVKGGLVADVGVRGFIPASMVERHFV 152

Query: 709 -EHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL-----INSAQQLPSDASHIHPN 762
            + +      IK      ++  +D E++ ++LSAK  L      N  + + S    + P 
Sbjct: 153 EDFSDYKGRSIKV-----KVKEIDRENNKVILSAKEVLEADFEANKQKIIAS----LEPG 203

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             + G V  +   G F+  +G + G    S+      A        GQSVR  +L V+  
Sbjct: 204 QELEGTVQRLTPFGAFID-IGGIDGLVHVSEISWQHVAHPKDAVSEGQSVRVKVLKVDPA 262

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
            G+I+LS+K +     D++                           +  F  G ++ G V
Sbjct: 263 AGKISLSMKAAQPGPWDSA---------------------------INSFNTGDIVTGTV 295

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVD 935
               DFG  +  E    V G +   Q+A   V +       G  ++A ILD   A++ V 
Sbjct: 296 RRIVDFGAFI--EIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVS 353

Query: 936 LSLK 939
           LS+K
Sbjct: 354 LSIK 357



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 143/362 (39%), Gaps = 53/362 (14%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G  VKG ++ ++   A V        + PL  +S  ++       +VG E+  +V+ 
Sbjct: 27  LKKGDTVKGTIVKIEDNQATVSLGYKYDGVIPLRELSSVQLDNAATAVQVGQEVELKVVS 86

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYA-----------EATDRLITHGWITKIEKHGCFVR 604
           +  +      K+ LV SK AI    A           EA D +I       + K G    
Sbjct: 87  IDDE------KEKLVLSKRAIDGEKAWEELQAKFDNSEAFDVVIAD-----VVKGGLVAD 135

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
              GV+GF P S +      E  S Y  G+ +K ++        R N   ++    V E 
Sbjct: 136 V--GVRGFIPASMVERH-FVEDFSDYK-GRSIKVKVKEI----DRENNKVILSAKEVLEA 187

Query: 665 DL----------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
           D           ++ G  + G V  +TP    + +   G   G +    ++   +H    
Sbjct: 188 DFEANKQKIIASLEPGQELEGTVQRLTPFGAFIDI---GGIDGLVHVSEIS--WQHVAHP 242

Query: 715 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCN 771
           K  +  G     ++L +D  +  + LS K     +AQ  P D++    +   +V G V  
Sbjct: 243 KDAVSEGQSVRVKVLKVDPAAGKISLSMK-----AAQPGPWDSAINSFNTGDIVTGTVRR 297

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           I++ G F+     + G    S+      A   +    GQ V++ ILD N    R++LS+K
Sbjct: 298 IVDFGAFIEIAPGVEGLVHISQIAHRHVATPHEVLKEGQEVKAKILDFNPAQKRVSLSIK 357

Query: 832 QS 833
           ++
Sbjct: 358 ET 359


>gi|430743377|ref|YP_007202506.1| 30S ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
 gi|430015097|gb|AGA26811.1| ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
          Length = 602

 Score = 95.5 bits (236), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 177/376 (47%), Gaps = 43/376 (11%)

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
             D+++GQ  TG V  + +  A + +   +   L I D  +E   L+    R  + + +  
Sbjct: 198  ADIAVGQVRTGTVKNLADFGAFVDLG-GIDGLLHITDMGWE--RLKHPGERLRVEEKIEV 254

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--G 1276
             +L+++KE+  + L L+                N    + E   VG R++  +  V   G
Sbjct: 255  MILNVDKERGKIALGLKQL------------TANPWEQVAEKYAVGARVTGEVVNVMSYG 302

Query: 1277 LVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
              V++   + G VH +E+     ++ P      G+ V+  VL I++  R     E+SL  
Sbjct: 303  AFVKLESGIEGLVHISEMSWTRRINHPSEVVQAGEQVEVVVLGINQQKR-----EISL-- 355

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
               GM  T +              + +E   P  +V+G V+N+T+ G F+ +   +D  +
Sbjct: 356  ---GMKQTQADPWD----------QVVEKYPPGTMVEGTVRNLTNYGAFVEVEEGIDGLL 402

Query: 1396 LLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
             +S++S    +  P +    G+ V+ +VLSV+   KR+ + LK          E +    
Sbjct: 403  HVSDMSWTRKIGHPNEVLEKGQTVSCQVLSVDLERKRIALGLK---QLRQDPWETDIPDR 459

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
               GDIV G+  ++ ++G+F+ +E   L GL H+SEL++  +D+ E +   G+ ++V++L
Sbjct: 460  YTAGDIVTGKATKLTNFGVFVELE-PGLEGLLHISELADHKIDSPEEVVNVGDDIEVRVL 518

Query: 1515 KVDKEKRRISLGMKSS 1530
            +VD+ +R+I L  + +
Sbjct: 519  RVDRGERKIGLSRRKA 534



 Score = 70.5 bits (171), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 135/275 (49%), Gaps = 31/275 (11%)

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC-VSDPLSGYDEGQFVKCKV 1316
             EGD+V G++++ +   GGL+V IG + +      +++    ++D L      + V+C +
Sbjct: 115  REGDVVTGKVTRKIK--GGLLVDIGINAFLPASQVDIRRPPDIADYLD-----REVRCVI 167

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L I    R   ++ +S RS ++         L             + D++   +  G VK
Sbjct: 168  LSIDEDRR---NIVVSRRSLIETERVALREQL-------------LADIAVGQVRTGTVK 211

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            N+   G F+ L   +D  + ++++    ++ P +   + + +   +L+V+    ++ + L
Sbjct: 212  NLADFGAFVDLG-GIDGLLHITDMGWERLKHPGERLRVEEKIEVMILNVDKERGKIALGL 270

Query: 1437 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDH 1495
            K   +    Q          VG  V G++  V SYG F+ +E + + GL H+SE+S    
Sbjct: 271  KQLTANPWEQV----AEKYAVGARVTGEVVNVMSYGAFVKLE-SGIEGLVHISEMSWTRR 325

Query: 1496 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +++   + +AGE+V+V +L ++++KR ISLGMK +
Sbjct: 326  INHPSEVVQAGEQVEVVVLGINQQKREISLGMKQT 360



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 143/333 (42%), Gaps = 21/333 (6%)

Query: 442 ISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG-LATGI--LKASAFEGLVFTHSDVKP 498
           I+D+  E ++   ++ +    + V IL      G +A G+  L A+ +E +   ++    
Sbjct: 231 ITDMGWERLKHPGERLRVEEKIEVMILNVDKERGKIALGLKQLTANPWEQVAEKYA---V 287

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVK 557
           G  V G+V+ V S+GA V+   G++ L  +  MS    I  P +  + G ++   VLG+ 
Sbjct: 288 GARVTGEVVNVMSYGAFVKLESGIEGLVHISEMSWTRRINHPSEVVQAGEQVEVVVLGIN 347

Query: 558 SKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            ++  I++  K+T       ++  Y   T   +  G +  +  +G FV    G+ G    
Sbjct: 348 QQKREISLGMKQTQADPWDQVVEKYPPGT---MVEGTVRNLTNYGAFVEVEEGIDGLLHV 404

Query: 616 SELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGS 671
           S++        P+ +   GQ V C+++S     +RI L        P      D    G 
Sbjct: 405 SDMSWTRKIGHPNEVLEKGQTVSCQVLSVDLERKRIALGLKQLRQDPWETDIPDRYTAGD 464

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVL 730
           +V+G    +T     V+V  +   +G +    LADH       + V+  G + + ++L +
Sbjct: 465 IVTGKATKLTNFG--VFVELEPGLEGLLHISELADH--KIDSPEEVVNVGDDIEVRVLRV 520

Query: 731 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNS 763
           D     + LS + +  + A +   +AS   P +
Sbjct: 521 DRGERKIGLSRRKAQDSPADREEGEASSAPPAA 553



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 137/366 (37%), Gaps = 43/366 (11%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +D+  G V  G V  +  FGA V   GG+  L  +  M    +  PG++ +V  ++   +
Sbjct: 198 ADIAVGQVRTGTVKNLADFGAFVDL-GGIDGLLHITDMGWERLKHPGERLRVEEKIEVMI 256

Query: 554 LGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V  +R  I +  K+        +   YA         G +  +  +G FV+  +G++G
Sbjct: 257 LNVDKERGKIALGLKQLTANPWEQVAEKYAVGAR---VTGEVVNVMSYGAFVKLESGIEG 313

Query: 612 FAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV--- 667
               SE+        PS +   G+ V+  ++      R I+L   MK T+    D V   
Sbjct: 314 LVHISEMSWTRRINHPSEVVQAGEQVEVVVLGINQQKREISLG--MKQTQADPWDQVVEK 371

Query: 668 -KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD- 725
              G++V G V  +T     V V            E   D L H + M    K G+  + 
Sbjct: 372 YPPGTMVEGTVRNLTNYGAFVEV------------EEGIDGLLHVSDMSWTRKIGHPNEV 419

Query: 726 ---------QLLVLDNESSNLLLSAKYSLINSAQQLPSDA---SHIHPNSVVHGYVCNII 773
                    Q+L +D E   + L  K       +Q P +           +V G    + 
Sbjct: 420 LEKGQTVSCQVLSVDLERKRIALGLK-----QLRQDPWETDIPDRYTAGDIVTGKATKLT 474

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             G FV     L G    S+  D +     +   VG  +   +L V+    +I LS +++
Sbjct: 475 NFGVFVELEPGLEGLLHISELADHKIDSPEEVVNVGDDIEVRVLRVDRGERKIGLSRRKA 534

Query: 834 CCSSTD 839
             S  D
Sbjct: 535 QDSPAD 540



 Score = 45.1 bits (105), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 100/486 (20%), Positives = 194/486 (39%), Gaps = 84/486 (17%)

Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK 541
           +  A+E +V  H   + G VV GKV      G +V    G+ A  P    S+ +I +P  
Sbjct: 103 RMRAWERVVSKH---REGDVVTGKVTRKIKGGLLVDI--GINAFLP---ASQVDIRRPPD 154

Query: 542 KFK-VGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSS--YAEATDRLITHGWITKIE 597
               +  E+   +L + + +R  V  +++L++++   L     A+     +  G +  + 
Sbjct: 155 IADYLDREVRCVILSIDEDRRNIVVSRRSLIETERVALREQLLADIAVGQVRTGTVKNLA 214

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657
             G FV    G+ G    +++G +    P     V + ++  I++      +I L     
Sbjct: 215 DFGAFVDL-GGIDGLLHITDMGWERLKHPGERLRVEEKIEVMILNVDKERGKIALGLKQL 273

Query: 658 PTRVSEDDLVK--LGSLVSG-VVDVVTPNAVVVYVIAKGYSKGTIPTEHLA--DHLEHAT 712
                E    K  +G+ V+G VV+V++  A   +V  +   +G +    ++    + H +
Sbjct: 274 TANPWEQVAEKYAVGARVTGEVVNVMSYGA---FVKLESGIEGLVHISEMSWTRRINHPS 330

Query: 713 VMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
               V++ G + + +++ ++ +   + L  K +  +   Q+        P ++V G V N
Sbjct: 331 ---EVVQAGEQVEVVVLGINQQKREISLGMKQTQADPWDQV---VEKYPPGTMVEGTVRN 384

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDG--QRADLSKTYYVG---------QSVRSNILDVN 820
           +   G FV             + +DG    +D+S T  +G         Q+V   +L V+
Sbjct: 385 LTNYGAFVEV----------EEGIDGLLHVSDMSWTRKIGHPNEVLEKGQTVSCQVLSVD 434

Query: 821 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
            E  RI L LKQ                           + +  E    + +  G ++ G
Sbjct: 435 LERKRIALGLKQL--------------------------RQDPWETDIPDRYTAGDIVTG 468

Query: 881 KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERL 933
           K  +  +FGV V  E    + G +   +LA   ++S       G  I+  +L V + ER 
Sbjct: 469 KATKLTNFGVFVELE--PGLEGLLHISELADHKIDSPEEVVNVGDDIEVRVLRVDRGERK 526

Query: 934 VDLSLK 939
           + LS +
Sbjct: 527 IGLSRR 532


>gi|152990412|ref|YP_001356134.1| 30S ribosomal protein S1 [Nitratiruptor sp. SB155-2]
 gi|151422273|dbj|BAF69777.1| 30S ribosomal protein S1 [Nitratiruptor sp. SB155-2]
          Length = 558

 Score = 95.5 bits (236), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 155/331 (46%), Gaps = 33/331 (9%)

Query: 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE 1259
            P+    F+ +  IG+ +T  V+ I+ E   + +  + +   I  K  +I N      ++E
Sbjct: 147  PNSQSFFKNKPEIGRKITAKVIKIDPENDSIVISRKAYLQDIFKKREEIVN----QLLNE 202

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            G IV G I KI +   G+ V++ P + G VH+ E+      +P   + EG  V  K ++ 
Sbjct: 203  GTIVEGTIKKITNY--GMFVEVAPQVEGLVHYNEISYKGPVNPAKYFQEGDKVNVKAIDF 260

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
            ++  R      LS++++                  P    E   +L P  ++   + N+ 
Sbjct: 261  NKEKRRLL---LSIKAT-----------------QPDPWEEIKGELEPGDVINVTISNIE 300

Query: 1380 SKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
              G F+ L   ++  + +S +S D   + P++    G+ +   V+ ++  ++++ V+LK 
Sbjct: 301  PYGAFVDLGNDIEGLLHISEMSWDKRPKHPKEYVQEGQQLDVEVIEIDAENRKLRVSLKN 360

Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
               +   +     LSN   GD+V G++  +  +G F+ I   ++ GL H  ++S +    
Sbjct: 361  LLPKPFEEF----LSNYKEGDVVEGEVTSLTDFGAFVRI--GSVEGLLHNQDISWEKGQK 414

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
             +  +  GEKV+VKI K+D++  +ISL  KS
Sbjct: 415  AKDAFNVGEKVEVKIAKIDRDNEKISLDRKS 445



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 115/498 (23%), Positives = 205/498 (41%), Gaps = 89/498 (17%)

Query: 456 KYKEGSCVRVRILGFR-------HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIA 508
           KY+ G  ++V + G R       H + LA   +KA      +  H D   G++++G +  
Sbjct: 74  KYQPGDTIKVMVSGHRNERPVISHKKALAKEKVKA-----FIEQHKDDFDGLILEGVIKG 128

Query: 509 VDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
            +  G IV+   GV+    LP+   F   KP    ++G ++  +V+ +  ++  I ++ K
Sbjct: 129 KNRGGYIVENDEGVQFF--LPNSQSFFKNKP----EIGRKITAKVIKIDPENDSIVISRK 182

Query: 567 KTLVKSKLAILSSYAEATDRL-----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
             L      I     E  ++L     I  G I KI  +G FV     V+G    +E+   
Sbjct: 183 AYL----QDIFKKREEIVNQLLNEGTIVEGTIKKITNYGMFVEVAPQVEGLVHYNEISYK 238

Query: 622 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVT 681
               P+  +  G  V  + +      RR+ LS  +K T+    + +K G L  G V  VT
Sbjct: 239 GPVNPAKYFQEGDKVNVKAIDFNKEKRRLLLS--IKATQPDPWEEIK-GELEPGDVINVT 295

Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM---------KSVIKPGYEFD-QLLVLD 731
            + +  Y          +   +  + L H + M         K  ++ G + D +++ +D
Sbjct: 296 ISNIEPY-------GAFVDLGNDIEGLLHISEMSWDKRPKHPKEYVQEGQQLDVEVIEID 348

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
            E+  L +S K  L    ++     S+     VV G V ++ + G FVR +G + G    
Sbjct: 349 AENRKLRVSLKNLLPKPFEEF---LSNYKEGDVVEGEVTSLTDFGAFVR-IGSVEGLLHN 404

Query: 792 SKAV--DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLL 849
                  GQ+A     + VG+ V   I  ++ +  +I+L  ++S   S    F +EH   
Sbjct: 405 QDISWEKGQKA--KDAFNVGEKVEVKIAKIDRDNEKISLD-RKSLLESPLEKFAKEH--- 458

Query: 850 EEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH--- 906
                                   +G +++G V +  +FGV V+ +E+ D  G I +   
Sbjct: 459 -----------------------KVGDIVKGTVKDIKEFGVFVALDENVD--GLIRNEDL 493

Query: 907 HQLAGATVESGSVIQAAI 924
           + L    ++SG  I+A I
Sbjct: 494 YPLKKEEIQSGDEIEAVI 511



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 93/174 (53%), Gaps = 11/174 (6%)

Query: 1359 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1418
            +E+ +D    +I++G +K   ++G +I+ + +   +  L N    +   PE    IG+ +
Sbjct: 110  IEQHKDDFDGLILEGVIKG-KNRGGYIVENDE-GVQFFLPNSQSFFKNKPE----IGRKI 163

Query: 1419 AGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
              +V+ ++P +  + ++ K    D     +  +N L  L+ G IV G IK++ +YG+F+ 
Sbjct: 164  TAKVIKIDPENDSIVISRKAYLQDIFKKREEIVNQL--LNEGTIVEGTIKKITNYGMFVE 221

Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +    + GL H +E+S     N    ++ G+KV VK +  +KEKRR+ L +K++
Sbjct: 222  VA-PQVEGLVHYNEISYKGPVNPAKYFQEGDKVNVKAIDFNKEKRRLLLSIKAT 274



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 82/402 (20%), Positives = 175/402 (43%), Gaps = 30/402 (7%)

Query: 352 FHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIY 411
           F L N+   + +KN     +K+ A+++ +DP + ++ ++   YL         + V  + 
Sbjct: 144 FFLPNS--QSFFKNKPEIGRKITAKVIKIDPENDSIVISRKAYLQDIFKKREEI-VNQLL 200

Query: 412 DQSKVV----RVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
           ++  +V    +     G+ +++          V  ++++ +      K ++EG  V V+ 
Sbjct: 201 NEGTIVEGTIKKITNYGMFVEVAP---QVEGLVHYNEISYKGPVNPAKYFQEGDKVNVKA 257

Query: 468 LGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
           + F   +      +KA+  +       +++PG V+   +  ++ +GA V     ++ L  
Sbjct: 258 IDFNKEKRRLLLSIKATQPDPWEEIKGELEPGDVINVTISNIEPYGAFVDLGNDIEGLLH 317

Query: 528 LPHMSEFEIVKPGKKF-KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEAT 584
           +  MS  +  K  K++ + G +L   V+ +  +++++ V+ K  L K     LS+Y E  
Sbjct: 318 ISEMSWDKRPKHPKEYVQEGQQLDVEVIEIDAENRKLRVSLKNLLPKPFEEFLSNYKEGD 377

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
              +  G +T +   G FVR    V+G     ++  + G +    ++VG+ V+ +I    
Sbjct: 378 ---VVEGEVTSLTDFGAFVRI-GSVEGLLHNQDISWEKGQKAKDAFNVGEKVEVKIAKID 433

Query: 645 PASRRINL---SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
             + +I+L   S +  P      +  K+G +V G V  +      V+V       G I  
Sbjct: 434 RDNEKISLDRKSLLESPLEKFAKEH-KVGDIVKGTVKDIKEFG--VFVALDENVDGLIRN 490

Query: 702 EHLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAK 742
           E L        + K  I+ G E + ++  LD +++ L LS +
Sbjct: 491 EDL------YPLKKEEIQSGDEIEAVISHLDTKNNRLRLSVR 526



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 96/446 (21%), Positives = 197/446 (44%), Gaps = 67/446 (15%)

Query: 1112 KIGQTVTARIIAKSNKPDM----KKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRV 1167
            +IG+ +TA++I    + D     +K++L ++  K       EI ++LL E      G  V
Sbjct: 158  EIGRKITAKVIKIDPENDSIVISRKAYLQDIFKKRE-----EIVNQLLNE------GTIV 206

Query: 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAYE-PSELQEFQRRFHIGKAVTGHVLSINKE 1226
             G + K+ N    + ++  ++  +   + +Y+ P    ++   F  G  V    +  NKE
Sbjct: 207  EGTIKKITNYGMFVEVAPQVEGLVHYNEISYKGPVNPAKY---FQEGDKVNVKAIDFNKE 263

Query: 1227 KKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286
            K+ L L ++  Q    D   +I  +     +  GD++   IS I     G  V +G  + 
Sbjct: 264  KRRLLLSIKATQ---PDPWEEIKGE-----LEPGDVINVTISNIEPY--GAFVDLGNDIE 313

Query: 1287 GRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNS 1345
            G +H +E+  +     P     EGQ +  +V+EI    R        LR SL  +     
Sbjct: 314  GLLHISEMSWDKRPKHPKEYVQEGQQLDVEVIEIDAENR-------KLRVSLKNL----- 361

Query: 1346 SDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1405
                     P    E + +     +V+G V ++T  G F+ +      + LL N    + 
Sbjct: 362  --------LPKPFEEFLSNYKEGDVVEGEVTSLTDFGAFVRIGS---VEGLLHNQDISWE 410

Query: 1406 --ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVI 1462
              +  +  F +G+ V  ++  ++  ++++ +     D ++  +S +   +  H VGDIV 
Sbjct: 411  KGQKAKDAFNVGEKVEVKIAKIDRDNEKISL-----DRKSLLESPLEKFAKEHKVGDIVK 465

Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            G +K ++ +G+F+ + + N+ GL    +L     + I++    G++++  I  +D +  R
Sbjct: 466  GTVKDIKEFGVFVAL-DENVDGLIRNEDLYPLKKEEIQS----GDEIEAVISHLDTKNNR 520

Query: 1523 ISLGMKS-SYFKNDADNLQMSSEEES 1547
            + L ++     K   D  +++S+E++
Sbjct: 521  LRLSVRRLQKMKEKEDLKKINSDEKT 546


>gi|328944315|ref|ZP_08241779.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829]
 gi|327491234|gb|EGF23009.1| 30S ribosomal protein S1 [Atopobium vaginae DSM 15829]
          Length = 409

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 186/398 (46%), Gaps = 54/398 (13%)

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGK 1214
             D   G  VTG V K++++  LL I       + A+   +     P EL       H+G 
Sbjct: 41   TDFDEGDLVTGTVVKIEHDEVLLDIGFKSEGVIPARELSIRKDASPEEL------VHMGD 94

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILS 1272
             +   VL   KE K  RL+L       S K  +     + ++     G  V G + +++ 
Sbjct: 95   TIEALVL--QKEDKEGRLIL-------SKKRAEYERAWNAVEEKFKAGVNVEGEVIEVVK 145

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            G  GL++ IG   +      +L+ +     LS Y  G  ++ +V+E+ R      +V LS
Sbjct: 146  G--GLILDIGLRGFLPASLVDLRRV---KDLSAY-MGTRIEARVIEMDRNRN---NVVLS 196

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             R  L+       S++ T              L P M ++G V ++   G F+ L   +D
Sbjct: 197  RRVVLEAARKAERSEILTK-------------LKPGMKLKGTVSSIVEFGAFVDLG-GID 242

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              + +S LS  +V  P +   +G+ V  +VL ++   +R+ + LK    +T        +
Sbjct: 243  GLIHISELSWNHVNHPAEVVKVGQEVEVQVLDIDLNRERISLGLK----QTTEDPWRVLV 298

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
                +G IV G + ++ ++G F+ + N  + GL H+SE+++ HVD    + + G+ V+VK
Sbjct: 299  KKYPIGAIVEGTVTKLVTFGAFVDLGN-GVEGLVHISEMAKAHVDAPAQVCKVGDVVQVK 357

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            ++++D E+RRISL +K++     A+ L    +EE+++A
Sbjct: 358  VMEIDLERRRISLSIKAA-----AETLGTDQDEEANDA 390



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +KPGM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +VL 
Sbjct: 216 LKPGMKLKGTVSSIVEFGAFVDL-GGIDGLIHISELSWNHVNHPAEVVKVGQEVEVQVLD 274

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           +    +RI++  K+T       ++  Y       I  G +TK+   G FV   NGV+G  
Sbjct: 275 IDLNRERISLGLKQTTEDPWRVLVKKYPIGA---IVEGTVTKLVTFGAFVDLGNGVEGLV 331

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SE+       P+ +  VG VV+ ++M      RRI+LS 
Sbjct: 332 HISEMAKAHVDAPAQVCKVGDVVQVKVMEIDLERRRISLSI 372



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 157/390 (40%), Gaps = 62/390 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     +      +G  P  EL +     P  + H+G  ++  ++      
Sbjct: 48  LVTGTVVKIEHDEVLLDIGFKSEGVIPARELSIRKDASPEELVHMGDTIEALVLQKEDKE 107

Query: 648 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            R+ LS     +      V E    K G  V G V  V    +++ +  +G+   ++   
Sbjct: 108 GRLILSKKRAEYERAWNAVEEK--FKAGVNVEGEVIEVVKGGLILDIGLRGFLPASLVDL 165

Query: 703 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 761
                L  +  M + I+      +++ +D   +N++LS +  L  + +   S+  + + P
Sbjct: 166 RRVKDL--SAYMGTRIEA-----RVIEMDRNRNNVVLSRRVVLEAARKAERSEILTKLKP 218

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              + G V +I+E G FV  LG + G    S+         ++   VGQ V   +LD++ 
Sbjct: 219 GMKLKGTVSSIVEFGAFVD-LGGIDGLIHISELSWNHVNHPAEVVKVGQEVEVQVLDIDL 277

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVI 878
              RI+L LKQ+                              +E  W   V+ + IG+++
Sbjct: 278 NRERISLGLKQT------------------------------TEDPWRVLVKKYPIGAIV 307

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAE 931
           EG V +   FG  V     + V G +   ++A A V++       G V+Q  ++++    
Sbjct: 308 EGTVTKLVTFGAFVDL--GNGVEGLVHISEMAKAHVDAPAQVCKVGDVVQVKVMEIDLER 365

Query: 932 RLVDLSLK----TVFIDRFREANSNRQAQK 957
           R + LS+K    T+  D+  EAN    A +
Sbjct: 366 RRISLSIKAAAETLGTDQDEEANDAAPADE 395


>gi|451944076|ref|YP_007464712.1| 30S ribosomal protein S1 [Corynebacterium halotolerans YIM 70093 =
            DSM 44683]
 gi|451903463|gb|AGF72350.1| 30S ribosomal protein S1 [Corynebacterium halotolerans YIM 70093 =
            DSM 44683]
          Length = 486

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 184/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEEFLAAVDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +  N++
Sbjct: 69   KHDVDPDEVVE------VGDEIDALVLT--KEDKEGRLILSKKR-----AQYERAWGNIE 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                  + V G + +++ G  GL++ IG   +      E++ +   DP  G    Q ++ 
Sbjct: 116  QLQANDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG----QELEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 170  KIIELDKHRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGV 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++
Sbjct: 273  SLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQ 326

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HVD  + I   GE V VK++ +D E+RRISL +K +
Sbjct: 327  RHVDVPDQIVTVGEDVMVKVIDIDLERRRISLSLKQA 363



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVDVPDQIVTVGEDVMVKVIDIDLERRRISLSL 360



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 166/402 (41%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +A D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGNIEQL-QANDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVDVPDQIVTVGEDVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EG+
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPEANEWLEGY 405


>gi|449703272|gb|EMD43754.1| S1 RNA binding domain containing protein [Entamoeba histolytica
           KU27]
          Length = 1234

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 196/439 (44%), Gaps = 28/439 (6%)

Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG 475
           + ++D  +G+   I  T      +++   + +E    + K++K GS  + R++ +   +G
Sbjct: 456 ISKIDENVGI---IGETEDKEEVFLSKKQIKDESCSDIPKEFKIGSTHKGRVMYYSAFDG 512

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
                 + S       +  D+K GM+++G +  V+  G IV+    +   C   +  +  
Sbjct: 513 YCGITTRESILSDKYQSIFDIKSGMIIEGTIKEVNEKGIIVKIGEKIYGFCDKINSGDIP 572

Query: 536 IVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
           I      FK   +  FRVL V ++   I +THK+TL+K+   I+++  E     IT G +
Sbjct: 573 IEDLQSVFKKEQKSKFRVLTVNNRNNSIYLTHKRTLMKATTPIITTIEETELNTITFGTV 632

Query: 594 TKIE-KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINL 652
           T I+ K G +++F+N ++GF P  EL      +   M  +GQ++K RI+S        +L
Sbjct: 633 TFIDNKRGVYLKFFNNIEGFIPTIEL----FNQKIGMISIGQLLKVRIISFDKQLLLCSL 688

Query: 653 SFMMKPTRVSE--DDL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSK--GTIPTEHLA 705
           + +     V E  +D+    ++G +  G+V V     +++  I  G  +    +P   + 
Sbjct: 689 N-LFPEENVPEKYEDVSRHFEVGEIYEGIV-VAKREKIMLVRIKSGDVQYIAMMPYYLVI 746

Query: 706 DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
           D  E   + K +I+ G    + L+L N+   ++++ K SLI+  +++    S        
Sbjct: 747 DGDEGQDIPK-MIRNGTILKECLLLKNQMGQMVITTKKSLISLRKKIGKFNSKEEMTVGK 805

Query: 766 H-GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
           + GYV  I    CF+ F   +T    R    D     + +   VGQ+V   +        
Sbjct: 806 YIGYVSKIKGKYCFISFYNGVTILCYRMNVSD-TNLPIEEVLEVGQTVYGYL------NK 858

Query: 825 RITLSLKQSCCSSTDASFM 843
           +   SLK+S   S    FM
Sbjct: 859 KGIFSLKESSVGSIKEEFM 877


>gi|406575491|ref|ZP_11051195.1| 30S ribosomal protein S1 [Janibacter hoylei PVAS-1]
 gi|404555203|gb|EKA60701.1| 30S ribosomal protein S1 [Janibacter hoylei PVAS-1]
          Length = 496

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 191/406 (47%), Gaps = 55/406 (13%)

Query: 1145 LTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS+  L    D +I     G  V G++ KVD +  LL I       + ++   +
Sbjct: 13   IAVNDIGSEEDLLAAIDATIKDFNDGDIVEGHIVKVDRDEVLLDIGYKTEGVIPSRELSI 72

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +PSE+        +G +V   VL   KE K  RL+L   +        + +   ++
Sbjct: 73   KHDVDPSEI------VAVGDSVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 119

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 120  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----IEA 173

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   +               +++L    +  G 
Sbjct: 174  KIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF-------------LKELQKGQVRSGV 217

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 218  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGDEVTVEVLDVDMDRERVSL 276

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +    + +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+E
Sbjct: 277  SLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAE 330

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1539
             HV+  E +   G+++ VK++ +D E+RRISL +K +    D  NL
Sbjct: 331  RHVELPEQVVNVGQEIFVKVIDIDLERRRISLSLKQA--NEDGANL 374



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 153/355 (43%), Gaps = 31/355 (8%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T  D   G +V+G ++ VD    ++      + + P   +S    V P +   VG  +  
Sbjct: 31  TIKDFNDGDIVEGHIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEIVAVGDSVEA 90

Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL  + K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G+
Sbjct: 91  LVLQKEDKEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GL 146

Query: 610 QGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRV 661
           +GF P S  E+      +P    +VG+ ++ +I+      +++  SRR  L       R 
Sbjct: 147 RGFLPASLVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 202

Query: 662 SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 720
           +    ++ G + SGVV  +      V +   G   G +    L+  H++H +    V++ 
Sbjct: 203 TFLKELQKGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEV 256

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCF 778
           G E   ++L +D +   + LS K +  +  Q      +  H    VV G V  ++  G F
Sbjct: 257 GDEVTVEVLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAF 312

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           VR    + G    S+  +       +   VGQ +   ++D++ E  RI+LSLKQ+
Sbjct: 313 VRVEDGIEGLVHISELAERHVELPEQVVNVGQEIFVKVIDIDLERRRISLSLKQA 367



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 135/298 (45%), Gaps = 43/298 (14%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 112  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 170

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1272
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G +S I++
Sbjct: 171  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLKELQKGQVRSGVVSSIVN 223

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
               G  V +G  + G VH +EL    +  P    + G  V  +VL++         V LS
Sbjct: 224  F--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGDEVTVEVLDVDMDRE---RVSLS 277

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
            L+++ +                P +H  +   +    +V G V  +   G F+ +   ++
Sbjct: 278  LKATQE---------------DPWQHFARTHAI--GQVVPGKVTKLVPFGAFVRVEDGIE 320

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
              V +S L++ +VE PE+   +G+ +  +V+ ++   +R+ ++LK ++   A+ +E +
Sbjct: 321  GLVHISELAERHVELPEQVVNVGQEIFVKVIDIDLERRRISLSLKQANEDGANLTEFD 378


>gi|385653141|ref|ZP_10047694.1| 30S ribosomal protein S1 [Leucobacter chromiiresistens JG 31]
          Length = 481

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 177/374 (47%), Gaps = 51/374 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  + G V K+D +  LL +       + ++   +    +P E+ E      +G +V   
Sbjct: 36   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPGEVVE------VGDSVEAL 89

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1278
            VL   KE K  RL+L   +        D+        I E + +V G + +++ G  GL+
Sbjct: 90   VL--QKEDKEGRLILSKKRAQYERAWGDVEK------IKENEGVVTGTVIEVVKG--GLI 139

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V IG   +      EL+ +    P  G    Q ++ K+LE+ +      +V LS R+ L+
Sbjct: 140  VDIGLRGFLPASLIELRRVRDLTPYLG----QEIEAKILELDKNRN---NVVLSRRALLE 192

Query: 1339 -GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1397
               S+T SS L+              +L P  + +G + ++ + G F+ L   +D  V +
Sbjct: 193  ETQSATRSSFLA--------------ELKPGQVRKGVISSIVNFGAFVDLG-GVDGLVHV 237

Query: 1398 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH- 1456
            S LS  ++E       +G+ V   VLSVE   +RV ++LK +      +      +  H 
Sbjct: 238  SELSWKHIEHASDVVEVGQEVTVEVLSVELDRERVSLSLKAT-----QEDPWQVFARTHA 292

Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
            +G I  G + ++  +G F+ + +  + GL H+SELS  HV+  E + +AG++V VKI+ +
Sbjct: 293  IGQIAPGVVTKLVPFGAFVRVAD-GIEGLVHISELSGQHVELAEQVVQAGQEVFVKIIDI 351

Query: 1517 DKEKRRISLGMKSS 1530
            D E+RRISL +K +
Sbjct: 352  DLERRRISLSLKQA 365



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++KPG V KG + ++ +FGA V   GGV  L  +  +S   I       +VG E+   V
Sbjct: 204 AELKPGQVRKGVISSIVNFGAFVDL-GGVDGLVHVSELSWKHIEHASDVVEVGQEVTVEV 262

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V+   +R++++ K T          ++A      I  G +TK+   G FVR  +G++G
Sbjct: 263 LSVELDRERVSLSLKATQEDPWQVFARTHAIGQ---IAPGVVTKLVPFGAFVRVADGIEG 319

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL          +   GQ V  +I+      RRI+LS 
Sbjct: 320 LVHISELSGQHVELAEQVVQAGQEVFVKIIDIDLERRRISLSL 362



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 153/352 (43%), Gaps = 39/352 (11%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +++G V+ +D    ++      + + P   +S    V PG+  +VG  +   VL  + 
Sbjct: 36  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPGEVVEVGDSVEALVLQKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  +  +  G + ++ K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDVEKIKE--NEGVVTGTVIEVVKGGLIVDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             EL       P    ++GQ ++ +I+      +++  SRR  L      TR S    +K
Sbjct: 152 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEETQSATRSSFLAELK 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GV+  +      V +   G   G +    L+  H+EHA+    V++ G E    
Sbjct: 208 PGQVRKGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---DVVEVGQEVTVE 261

Query: 728 LV---LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFL 782
           ++   LD E  +L L A        Q+ P    +  H    +  G V  ++  G FVR  
Sbjct: 262 VLSVELDRERVSLSLKA-------TQEDPWQVFARTHAIGQIAPGVVTKLVPFGAFVRVA 314

Query: 783 GRLTGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             + G    S+ + GQ  +L+ +    GQ V   I+D++ E  RI+LSLKQ+
Sbjct: 315 DGIEGLVHISE-LSGQHVELAEQVVQAGQEVFVKIIDIDLERRRISLSLKQA 365



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 150/371 (40%), Gaps = 38/371 (10%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI++    +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVESTLKFFNDGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPGEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG---SLVSGVVDVVTPNAVVVYVIA 691
            V+  ++       R+ LS        +  D+ K+     +V+G V  V    ++V +  
Sbjct: 85  SVEALVLQKEDKEGRLILSKKRAQYERAWGDVEKIKENEGVVTGTVIEVVKGGLIVDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+    +P    A  +E   V       G E + ++L LD   +N++LS + +L+   Q
Sbjct: 145 RGF----LP----ASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLS-RRALLEETQ 195

Query: 751 QLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808
                +  + + P  V  G + +I+  G FV  LG + G    S+         S    V
Sbjct: 196 SATRSSFLAELKPGQVRKGVISSIVNFGAFVD-LGGVDGLVHVSELSWKHIEHASDVVEV 254

Query: 809 GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW 868
           GQ V   +L V  +  R++LSLK +        F + H + +    ++      G+ ++ 
Sbjct: 255 GQEVTVEVLSVELDRERVSLSLKATQEDPWQV-FARTHAIGQIAPGVVTKLVPFGAFVRV 313

Query: 869 VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVA 928
            +G      IEG VH S   G                H +LA   V++G  +   I+D+ 
Sbjct: 314 ADG------IEGLVHISELSG---------------QHVELAEQVVQAGQEVFVKIIDID 352

Query: 929 KAERLVDLSLK 939
              R + LSLK
Sbjct: 353 LERRRISLSLK 363


>gi|297584436|ref|YP_003700216.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens
            MLS10]
 gi|297142893|gb|ADH99650.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10]
          Length = 388

 Score = 95.1 bits (235), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 183/371 (49%), Gaps = 43/371 (11%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +S+G    G V KV+++ A + +        + +D     SEL       H+ KA  G V
Sbjct: 15   LSVGDVTKGTVSKVEDKQAYVNVG-------YKMDGVVPISELA----SLHVEKA--GDV 61

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTV--DISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
            ++  +E +   + L   +  +S + V  + + +NM   +  G++    ++ ++ G  GLV
Sbjct: 62   INEGEEYEFKVIKLTEDELVLSRRAVAAEKTWENMAEKLESGEVFEAEVADVVKG--GLV 119

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V +G  + G +  + ++   V D  S Y +G+ ++ KV+E+ R         LS R+ LD
Sbjct: 120  VDVG--VRGFIPASLVERFYVED-FSEY-KGKTLRLKVVELDRERNKLI---LSQRAVLD 172

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
                          +   +  E +  +S   +V G V+ +TS G F+ +   +D  V +S
Sbjct: 173  E-------------EALNQKKETLHSISAGEVVSGTVQRITSFGVFVDIG-GVDGLVHIS 218

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1458
             LS  ++E+P +    G  V  +VLSV+P ++R+ +++K +        E        VG
Sbjct: 219  QLSHEHIETPSEVVSEGDEVKVKVLSVDPDNERISLSIKETMPGPWEGVE----EQFSVG 274

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
            D+V G++KR+ S+G F+ +    + GL H+S+++  H+     + + GE+V  KIL ++ 
Sbjct: 275  DVVTGKVKRLVSFGAFVEVAK-GVEGLVHISQIANRHIGTPGEVLKEGEEVSAKILDINL 333

Query: 1519 EKRRISLGMKS 1529
            + +RISL +++
Sbjct: 334  DDKRISLSIRA 344



 Score = 63.2 bits (152), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
            L ++  G++V G ++R+ S+G+F+ I   +  GL H+S+LS +H++    +   G++VKV
Sbjct: 183  LHSISAGEVVSGTVQRITSFGVFVDIGGVD--GLVHISQLSHEHIETPSEVVSEGDEVKV 240

Query: 1512 KILKVDKEKRRISLGMKSS 1530
            K+L VD +  RISL +K +
Sbjct: 241  KVLSVDPDNERISLSIKET 259



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 132/283 (46%), Gaps = 46/283 (16%)

Query: 1200 PSELQEFQRRFHI-------GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
            P+ L E   RF++       GK +   V+ +++E+  L L  R   D   ++ ++   + 
Sbjct: 129  PASLVE---RFYVEDFSEYKGKTLRLKVVELDRERNKLILSQRAVLD---EEALNQKKET 182

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            + + I  G++V G + +I S   G+ V IG  + G VH ++L +  +  P     EG  V
Sbjct: 183  LHS-ISAGEVVSGTVQRITSF--GVFVDIGG-VDGLVHISQLSHEHIETPSEVVSEGDEV 238

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            K KVL +         + LS++ ++ G               P + +E  E  S   +V 
Sbjct: 239  KVKVLSVDPD---NERISLSIKETMPG---------------PWEGVE--EQFSVGDVVT 278

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G VK + S G F+ +++ ++  V +S +++ ++ +P +    G+ V+ ++L +    KR+
Sbjct: 279  GKVKRLVSFGAFVEVAKGVEGLVHISQIANRHIGTPGEVLKEGEEVSAKILDINLDDKRI 338

Query: 1433 EVTLKTSDSRT------ASQSEI---NNLSNLHVGDIVIGQIK 1466
             ++++  +  T      A + E       S  ++GD++  Q+K
Sbjct: 339  SLSIRALEEETQEKEASAQKQEFAKDEEQSGFNLGDVIGDQLK 381



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 7/164 (4%)

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           HS +  G VV G V  + SFG  V   GGV  L  +  +S   I  P +    G E+  +
Sbjct: 184 HS-ISAGEVVSGTVQRITSFGVFVDI-GGVDGLVHISQLSHEHIETPSEVVSEGDEVKVK 241

Query: 553 VLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
           VL V   ++RI+++ K+T+      +   ++      +  G + ++   G FV    GV+
Sbjct: 242 VLSVDPDNERISLSIKETMPGPWEGVEEQFSVGD---VVTGKVKRLVSFGAFVEVAKGVE 298

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           G    S++       P  +   G+ V  +I+      +RI+LS 
Sbjct: 299 GLVHISQIANRHIGTPGEVLKEGEEVSAKILDINLDDKRISLSI 342



 Score = 47.4 bits (111), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 158/393 (40%), Gaps = 59/393 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 643
           +T G ++K+E    +V     + G  P SEL      +   + + G+  + +++      
Sbjct: 20  VTKGTVSKVEDKQAYVNVGYKMDGVVPISELASLHVEKAGDVINEGEEYEFKVIKLTEDE 79

Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE- 702
           +  SRR   +   + T  +  + ++ G +    V  V    +VV V  +G+   ++    
Sbjct: 80  LVLSRR---AVAAEKTWENMAEKLESGEVFEAEVADVVKGGLVVDVGVRGFIPASLVERF 136

Query: 703 HLADHLEH--ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-I 759
           ++ D  E+   T+   V++          LD E + L+LS +  L   A     +  H I
Sbjct: 137 YVEDFSEYKGKTLRLKVVE----------LDRERNKLILSQRAVLDEEALNQKKETLHSI 186

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               VV G V  I   G FV  +G + G    S+         S+    G  V+  +L V
Sbjct: 187 SAGEVVSGTVQRITSFGVFVD-IGGVDGLVHISQLSHEHIETPSEVVSEGDEVKVKVLSV 245

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  RI+LS+K++     +         +EE+                   F +G V+ 
Sbjct: 246 DPDNERISLSIKETMPGPWEG--------VEEQ-------------------FSVGDVVT 278

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAER 932
           GKV     FG  V  E    V G +   Q+A       G  ++ G  + A ILD+   ++
Sbjct: 279 GKVKRLVSFGAFV--EVAKGVEGLVHISQIANRHIGTPGEVLKEGEEVSAKILDINLDDK 336

Query: 933 LVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 965
            + LS++ +  +  +E  ++ Q Q+  +  E S
Sbjct: 337 RISLSIRALE-EETQEKEASAQKQEFAKDEEQS 368



 Score = 40.4 bits (93), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 423 LGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGIL 481
            G+ +DI          V IS ++ E +    +   EG  V+V++L      E ++  I 
Sbjct: 202 FGVFVDIGGVD----GLVHISQLSHEHIETPSEVVSEGDEVKVKVLSVDPDNERISLSIK 257

Query: 482 KA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +     +EG+         G VV GKV  + SFGA V+   GV+ L  +  ++   I  P
Sbjct: 258 ETMPGPWEGV---EEQFSVGDVVTGKVKRLVSFGAFVEVAKGVEGLVHISQIANRHIGTP 314

Query: 540 GKKFKVGAELVFRVLGVK--SKRITVT 564
           G+  K G E+  ++L +    KRI+++
Sbjct: 315 GEVLKEGEEVSAKILDINLDDKRISLS 341


>gi|188586255|ref|YP_001917800.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
            thermophilus JW/NM-WN-LF]
 gi|179350942|gb|ACB85212.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
            thermophilus JW/NM-WN-LF]
          Length = 705

 Score = 95.1 bits (235), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 142/281 (50%), Gaps = 25/281 (8%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGLVV +G  L G +  + +    V D LS Y  G+ ++ K +E+ R+      + LS +
Sbjct: 426  GGLVVDLG-QLQGFIPASHVDIHYVPD-LSKY-VGEELRLKPIELDRSRN---KIVLSQK 479

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + L+              +   K  + +E ++   IV G VK +T  G FI +   +D  
Sbjct: 480  NILEQ-------------EQEEKKNKTMETITEGDIVDGTVKRLTDFGAFIDIG-GIDGL 525

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
              +S +S   ++ PE E   G+ V  +VLS++P ++R+ +++K +            +  
Sbjct: 526  CHISQISHSRIDHPESELETGENVKVKVLSLDPENERISLSIKEAQPDPFE----TFMKQ 581

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
               GDIV G++ R  ++G FI I    + GLCH+S+LS+DHV   + +   G++V VKIL
Sbjct: 582  YKSGDIVQGKVVRTVNFGAFIEI-TPGVEGLCHISQLSDDHVAKTQDVVNEGDQVTVKIL 640

Query: 1515 KVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVG 1555
             +D +++++SL +K +  K+  +  Q    +  D   EE G
Sbjct: 641  SIDDQQKKVSLSIKEAQGKSKKEQEQEEFAKYQDSQEEEEG 681



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 44/249 (17%)

Query: 1420 GRVLSVEPLS---KRVEVTLKTSDSRTASQSEINN--LSNLHVGDIVIGQIKRVESYGLF 1474
            G  L ++P+     R ++ L   +     Q E  N  +  +  GDIV G +KR+  +G F
Sbjct: 457  GEELRLKPIELDRSRNKIVLSQKNILEQEQEEKKNKTMETITEGDIVDGTVKRLTDFGAF 516

Query: 1475 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS---- 1530
            I I    + GLCH+S++S   +D+ E+    GE VKVK+L +D E  RISL +K +    
Sbjct: 517  IDI--GGIDGLCHISQISHSRIDHPESELETGENVKVKVLSLDPENERISLSIKEAQPDP 574

Query: 1531 -------YFKND------ADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMES 1577
                   Y   D         +   +  E    +E  G  + S L ++     QD+  E 
Sbjct: 575  FETFMKQYKSGDIVQGKVVRTVNFGAFIEITPGVE--GLCHISQLSDDHVAKTQDVVNE- 631

Query: 1578 EDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKE 1637
               G  V  +I          +++DD+Q  +   I + QG + + +  +E     AK ++
Sbjct: 632  ---GDQVTVKI----------LSIDDQQKKVSLSIKEAQGKSKKEQEQEE----FAKYQD 674

Query: 1638 KEEREQEIR 1646
             +E E+ ++
Sbjct: 675  SQEEEEGVK 683



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T   +  G +V G V  +  FGA +   GG+  LC +  +S   I  P  + + G  +  
Sbjct: 493 TMETITEGDIVDGTVKRLTDFGAFIDI-GGIDGLCHISQISHSRIDHPESELETGENVKV 551

Query: 552 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
           +VL +  +++RI+++ K+         +  Y       I  G + +    G F+    GV
Sbjct: 552 KVLSLDPENERISLSIKEAQPDPFETFMKQYKSGD---IVQGKVVRTVNFGAFIEITPGV 608

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           +G    S+L  D   +   + + G  V  +I+S     ++++LS 
Sbjct: 609 EGLCHISQLSDDHVAKTQDVVNEGDQVTVKILSIDDQQKKVSLSI 653



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 134/305 (43%), Gaps = 52/305 (17%)

Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLADHLEHATV 713
           +MK T  S D L + G +V G V  VT +  ++ V   GY  +G++P   +   ++    
Sbjct: 312 LMKATEDSADKLDR-GQVVKGKVVKVTEDEAMIDV---GYKFEGSVPVNEMP--IKEGES 365

Query: 714 MKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 772
           ++ ++  G E D +++ +D+E   L+LS K++  +  +Q       +  +  +   V   
Sbjct: 366 LEDLLSEGDEIDVKVVKVDDEEGQLILSKKWA--DKDKQWEQLEQLMENDEEIKAQVTEE 423

Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           ++ G  V  LG+L GF P S        DLSK  YVG+ +R   ++++    +I LS K 
Sbjct: 424 VKGGLVVD-LGQLQGFIPASHVDIHYVPDLSK--YVGEELRLKPIELDRSRNKIVLSQKN 480

Query: 833 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
                          +LE++    Q  K N    K +E    G +++G V    DFG  +
Sbjct: 481 ---------------ILEQE----QEEKKN----KTMETITEGDIVDGTVKRLTDFGAFI 517

Query: 893 SFEEHSDVYGF--------ITHHQL--AGATVESGSVIQAAILDVAKAERLVDLSLKTVF 942
                 D+ G         I+H ++    + +E+G  ++  +L +      + LS+K   
Sbjct: 518 ------DIGGIDGLCHISQISHSRIDHPESELETGENVKVKVLSLDPENERISLSIKEAQ 571

Query: 943 IDRFR 947
            D F 
Sbjct: 572 PDPFE 576



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 14/171 (8%)

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
           GDI D +  V+     G  +DI            IS ++   +   E + + G  V+V++
Sbjct: 500 GDIVDGT--VKRLTDFGAFIDIGGID----GLCHISQISHSRIDHPESELETGENVKVKV 553

Query: 468 LGFR-HLEGLATGILKASA--FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
           L      E ++  I +A    FE  +  +   K G +V+GKV+   +FGA ++   GV+ 
Sbjct: 554 LSLDPENERISLSIKEAQPDPFETFMKQY---KSGDIVQGKVVRTVNFGAFIEITPGVEG 610

Query: 525 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSK 573
           LC +  +S+  + K       G ++  ++L +  + K+++++ K+   KSK
Sbjct: 611 LCHISQLSDDHVAKTQDVVNEGDQVTVKILSIDDQQKKVSLSIKEAQGKSK 661


>gi|386773662|ref|ZP_10096040.1| 30S ribosomal protein S1 [Brachybacterium paraconglomeratum LC44]
          Length = 494

 Score = 94.7 bits (234), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 190/398 (47%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIG-SKLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IG +  L    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    IAINDIGDADELMAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P++         +G  +   VL   KE K  RL+L   +        + +  +++
Sbjct: 69   KHDVDPAD------EVEVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGSIE 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                +  +V GR+ +++ G  GL+V IG   +      E++ +    P  G    Q ++ 
Sbjct: 116  QIKEDEGVVTGRVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   SD              ++ L    + +G 
Sbjct: 170  KIIELDKNRN---NVVLSRRAYLEETQSAVRSDF-------------LQTLQKGQVREGA 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLDVDMDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            +LK      A+Q +   L +  H +G++V G++ ++  +G F+ +E+  + GL H+SEL+
Sbjct: 273  SLK------ATQEDPWQLFARTHAIGEVVPGKVTKLVPFGAFVRVED-GIEGLVHISELA 325

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            + HVD  E +    + V VK++ +D E+RRISL +K +
Sbjct: 326  QRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQA 363



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 162/392 (41%), Gaps = 44/392 (11%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P  + +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPADEVEVGDEIEALVLQKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGSIEQIKE--DEGVVTGRVIEVVKGGLIVDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSDFLQTLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  G V  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 206 KGQVREGAVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVKVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 260 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHAIGEVVPGKVTKLVPFGAFVRVEDGI 315

Query: 786 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSC----CSSTDA 840
            G    S+    +  DL  +   V Q V   ++D++ E  RI+LSLKQ+         D 
Sbjct: 316 EGLVHISELAQ-RHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSLKQANEGVDPEGDDT 374

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
           +F    +       M      NG E K+ EGF
Sbjct: 375 TFDPALY------GMAAEYDANG-EYKYPEGF 399



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 2/159 (1%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   VL 
Sbjct: 204 LQKGQVREGAVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLD 262

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           V   R  V+      +     L +   A   ++  G +TK+   G FVR  +G++G    
Sbjct: 263 VDMDRERVSLSLKATQEDPWQLFARTHAIGEVVP-GKVTKLVPFGAFVRVEDGIEGLVHI 321

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           SEL       P  +  V Q V  +++      RRI+LS 
Sbjct: 322 SELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLSL 360



 Score = 47.4 bits (111), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 146/380 (38%), Gaps = 56/380 (14%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI ++     D  I  G + K++     +      +G  P  EL +    +P+    VG 
Sbjct: 23  AIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPADEVEVGD 82

Query: 635 VVKCRIMSSIPASRRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 686
            ++  ++       R+ LS              ++ ED+      +V+G V  V    ++
Sbjct: 83  EIEALVLQKEDKEGRLILSKKRAQYERAWGSIEQIKEDE-----GVVTGRVIEVVKGGLI 137

Query: 687 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 745
           V +  +G+   ++        +E   V       G E + +++ LD   +N++LS +  L
Sbjct: 138 VDIGLRGFLPASL--------VEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAYL 189

Query: 746 INSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
             +   + SD    +    V  G V +I+  G FV  LG + G    S+         S+
Sbjct: 190 EETQSAVRSDFLQTLQKGQVREGAVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSE 248

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
              VGQ V+  +LDV+ +  R++LSLK +                +E    L +  H   
Sbjct: 249 VVEVGQKVKVEVLDVDMDRERVSLSLKAT----------------QEDPWQLFARTHA-- 290

Query: 865 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSV 919
                    IG V+ GKV +   FG  V  E+  +    I+     H  L    V     
Sbjct: 291 ---------IGEVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVTVDQD 341

Query: 920 IQAAILDVAKAERLVDLSLK 939
           +   ++D+    R + LSLK
Sbjct: 342 VFVKVIDIDLERRRISLSLK 361



 Score = 44.7 bits (104), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 114/245 (46%), Gaps = 31/245 (12%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R    + ++G+ +   ++ ++K +  + L  R +   + +    + +D +QT
Sbjct: 147  PASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAY---LEETQSAVRSDFLQT 203

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
             + +G +  G +S I++   G  V +G  + G VH +EL    +  P    + GQ VK +
Sbjct: 204  -LQKGQVREGAVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVKVE 259

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            VL++         V LSL+++ +                P +   +   +    +V G V
Sbjct: 260  VLDVDMDRE---RVSLSLKATQE---------------DPWQLFARTHAIGE--VVPGKV 299

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
              +   G F+ +   ++  V +S L+  +V+ PE+   + + V  +V+ ++   +R+ ++
Sbjct: 300  TKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVTVDQDVFVKVIDIDLERRRISLS 359

Query: 1436 LKTSD 1440
            LK ++
Sbjct: 360  LKQAN 364



 Score = 42.0 bits (97), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 119/294 (40%), Gaps = 60/294 (20%)

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
           G +V G V  V  + V++ +   GY ++G IP+  L+  ++H       ++ G E + L+
Sbjct: 34  GDIVEGTVVKVDHDEVLLDI---GYKTEGVIPSRELS--IKHDVDPADEVEVGDEIEALV 88

Query: 729 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           +  +++   L+LS K +    A    +Q+  D        VV G V  +++ G  V    
Sbjct: 89  LQKEDKEGRLILSKKRAQYERAWGSIEQIKED------EGVVTGRVIEVVKGGLIVDI-- 140

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDA 840
            L GF P S     +  DL    YVGQ + + I++++     + LS +   +   S+  +
Sbjct: 141 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRS 198

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            F+Q           LQ                 G V EG V    +FG  V       V
Sbjct: 199 DFLQ----------TLQK----------------GQVREGAVSSIVNFGAFVDL---GGV 229

Query: 901 YGFITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
            G +   +L+          VE G  ++  +LDV      V LSLK    D ++
Sbjct: 230 DGLVHVSELSWKHIDHPSEVVEVGQKVKVEVLDVDMDRERVSLSLKATQEDPWQ 283


>gi|354613005|ref|ZP_09030941.1| RNA binding S1 domain protein [Saccharomonospora paurometabolica YIM
            90007]
 gi|353222660|gb|EHB86961.1| RNA binding S1 domain protein [Saccharomonospora paurometabolica YIM
            90007]
          Length = 507

 Score = 94.7 bits (234), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 193/412 (46%), Gaps = 55/412 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S +   + V++IGS+  F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 12   SEQAKQVAVNDIGSEDDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 71

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G AV   VL   KE K  RL+L   +        + 
Sbjct: 72   SRELSIKHDVDPAEV------VAVGDAVEALVL--QKEDKEGRLILSKKR-----AQYER 118

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++      + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 119  AWGTIEELKERDEPVSGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE- 175

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L+  
Sbjct: 176  ---LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF-------------LNALAKG 216

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VLSVE  
Sbjct: 217  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLSVEMD 275

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 276  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 329

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY--FKNDAD 1537
            +SEL+E HV+  E + + G +V VK++ +D E+RRISL +K +   F  DA+
Sbjct: 330  ISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGFTPDAE 381



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 143/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 45  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKEDKE 104

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    VSG V  V    +++ +  +G+   ++     
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKERDEPVSGTVIEVVKGGLILDIGLRGFLPASL----- 159

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 160 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKG 216

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L V  +
Sbjct: 217 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLSVEMD 275

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 276 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 308

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G  +   ++D+    R + LS
Sbjct: 309 TKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLS 368

Query: 938 LK 939
           LK
Sbjct: 369 LK 370



 Score = 47.4 bits (111), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 151/358 (42%), Gaps = 32/358 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKED 102

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKERDEPV--SGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L ++ +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLSVEMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 842
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T DA F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGFTPDAEF 382



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 117/268 (43%), Gaps = 38/268 (14%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +     ++
Sbjct: 145  LILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY----LEQ 200

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 201  TQSEVRSEFLNALAKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 257

Query: 1305 GYDEGQFVKCKVL--EISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1362
              + GQ V  +VL  E+ R       V LSL+++ +                P +   + 
Sbjct: 258  VVEVGQEVTVEVLSVEMDRE-----RVSLSLKATQE---------------DPWRQFART 297

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
              +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +G  V  +V
Sbjct: 298  HAI--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMVKV 355

Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
            + ++   +R+ ++LK ++      +E +
Sbjct: 356  IDIDLERRRISLSLKQANEGFTPDAEFD 383


>gi|374314868|ref|YP_005061296.1| 30S ribosomal protein S1 [Sphaerochaeta pleomorpha str. Grapes]
 gi|359350512|gb|AEV28286.1| ribosomal protein S1 [Sphaerochaeta pleomorpha str. Grapes]
          Length = 573

 Score = 94.7 bits (234), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 174/372 (46%), Gaps = 55/372 (14%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            GQ V G V +V+NE+  + +    + ++             EF     +G+ V   V+ I
Sbjct: 32   GQLVAGTVVQVNNEYVFVDVGYKSEGRI----------SRDEFTTIPEVGEQV--KVVII 79

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            NKE K  ++V+   +    ++T     D ++T       V G+  K++ G  G  V +G 
Sbjct: 80   NKEGKGGQIVVSKKRADFKERT-----DELKTAAEGRTPVMGKFEKVIKG--GFEVDLGG 132

Query: 1284 HLYGRVHFTELKNICVSDP-----LSGYDEGQFVKCKVLEISRTVRGT-FHVELSLRSSL 1337
               G    ++   I V DP     +S Y    F+      I +   GT     ++ R  L
Sbjct: 133  EYKGFCPLSKADVIRVEDPETLIGISDY----FI------IDKFHGGTKLKSVVNRREYL 182

Query: 1338 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1397
            D     N     + V        +I D     +V+G VK+ TS G FI L    D  + +
Sbjct: 183  DQKIKENKEKFFSTV--------QIGD-----VVEGVVKSFTSFGAFIDLG-GFDGLLHI 228

Query: 1398 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1457
            +++S G+V  P+     G++V  R+++++P ++++ ++LK       +  E     N HV
Sbjct: 229  NDMSWGHVTRPKDFVKKGQVVQLRLINIDPETQKINLSLKHMQEDPWTTFE----HNFHV 284

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKV 1516
            GD+V   + ++ ++G FI IE   + GL H+SELS    V+N + +   G+ V+ KIL  
Sbjct: 285  GDVVKAPVTKITTFGAFIEIE-PGIEGLAHISELSWTKRVNNPKEVLDVGDVVEAKILGY 343

Query: 1517 DKEKRRISLGMK 1528
            D +K+R+SLG+K
Sbjct: 344  DLDKKRVSLGLK 355



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 148/352 (42%), Gaps = 27/352 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S V+ G VV+G V +  SFGA +   GG   L  +  MS   + +P    K G  +  R+
Sbjct: 195 STVQIGDVVEGVVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQVVQLRL 253

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           + +  ++++I ++ K  + +             D  +    +TKI   G F+    G++G
Sbjct: 254 INIDPETQKINLSLKH-MQEDPWTTFEHNFHVGD--VVKAPVTKITTFGAFIEIEPGIEG 310

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLV 667
            A  SEL        P  +  VG VV+ +I+      +R++L        P     +   
Sbjct: 311 LAHISELSWTKRVNNPKEVLDVGDVVEAKILGYDLDKKRVSLGLKQLESNPWDTIAERYP 370

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFD 725
              +L   VV +    A V         +G     H+ D    +    M S    G   D
Sbjct: 371 TGMTLSKPVVKITNSGAFV------NLEEGIDGFLHIDDISWTKKVKNMSSFCAEGDVID 424

Query: 726 QLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLG 783
            ++  ++ E+  + L  K    N  Q L     H +P  S + G + N+ + G FV+ LG
Sbjct: 425 VVVTRVEPENRRIRLGVKQLEGNPWQTL----RHDYPKFSTISGVITNVTDFGVFVKVLG 480

Query: 784 RLTGFAPRSKAV--DGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            + G   +   V  D + +D + K Y VG  + + +++ N  T +++LS+K+
Sbjct: 481 DIEGLISKFNLVGPDEEFSDEVLKKYNVGDPITAMVVECNPTTQKLSLSIKE 532



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 119/271 (43%), Gaps = 30/271 (11%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD+V G +    S   G  + +G    G +H  ++    V+ P     +GQ V+ +++ I
Sbjct: 200  GDVVEGVVKSFTSF--GAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGQVVQLRLINI 256

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                  T  + LSL+             +  D  T  +H   + D     +V+  V  +T
Sbjct: 257  DPE---TQKINLSLKH------------MQEDPWTTFEHNFHVGD-----VVKAPVTKIT 296

Query: 1380 SKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
            + G FI +   ++    +S LS    V +P++   +G +V  ++L  +   KRV + LK 
Sbjct: 297  TFGAFIEIEPGIEGLAHISELSWTKRVNNPKEVLDVGDVVEAKILGYDLDKKRVSLGLKQ 356

Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVD 1497
             +S           + + +   V+    ++ + G F+ +E   + G  H+ ++S    V 
Sbjct: 357  LESNPWDTIAERYPTGMTLSKPVV----KITNSGAFVNLEE-GIDGFLHIDDISWTKKVK 411

Query: 1498 NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            N+ +    G+ + V + +V+ E RRI LG+K
Sbjct: 412  NMSSFCAEGDVIDVVVTRVEPENRRIRLGVK 442



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 119/299 (39%), Gaps = 23/299 (7%)

Query: 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
           S V++GD+ +   VV+     G  +D+          + I+D++   V + +   K+G  
Sbjct: 195 STVQIGDVVE--GVVKSFTSFGAFIDLGGFD----GLLHINDMSWGHVTRPKDFVKKGQV 248

Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
           V++R++            LK    +       +   G VVK  V  + +FGA ++   G+
Sbjct: 249 VQLRLINIDPETQKINLSLKHMQEDPWTTFEHNFHVGDVVKAPVTKITTFGAFIEIEPGI 308

Query: 523 KALCPLPHMSEFEIVK----PGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAI 576
           + L    H+SE    K    P +   VG  +  ++LG  +  KR+++  K+        I
Sbjct: 309 EGLA---HISELSWTKRVNNPKEVLDVGDVVEAKILGYDLDKKRVSLGLKQLESNPWDTI 365

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP-SSMYHVGQV 635
              Y      +     + KI   G FV    G+ GF    ++      +  SS    G V
Sbjct: 366 AERYPTG---MTLSKPVVKITNSGAFVNLEEGIDGFLHIDDISWTKKVKNMSSFCAEGDV 422

Query: 636 VKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
           +   +    P +RRI L        P +    D  K  S +SGV+  VT   V V V+ 
Sbjct: 423 IDVVVTRVEPENRRIRLGVKQLEGNPWQTLRHDYPKF-STISGVITNVTDFGVFVKVLG 480


>gi|295395316|ref|ZP_06805520.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971867|gb|EFG47738.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030]
          Length = 488

 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 189/412 (45%), Gaps = 57/412 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
            + K S + V++IGS   F    D +I     G  V G + KVD +  L+ I    K +  
Sbjct: 8    TAKNSQVAVNDIGSADEFLAAVDETIKYFNDGDIVEGTIVKVDRDEVLVDIG--YKTEGV 65

Query: 1193 ILDSAY------EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
            IL          +P+E+ E      +G  +   VL+  KE K  RL+L   +        
Sbjct: 66   ILSRELSIKHDVDPAEVVE------VGDPIEALVLT--KEDKDGRLMLSKKRAQYERAWG 117

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            DI     +   +EG +V G + +++ G  GL+V IG   +      E++ +    P  G 
Sbjct: 118  DIE----KVKENEG-VVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLTPYIG- 169

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
               Q V  K++E+ +      +V LS R+ L+   ST   D              ++ L 
Sbjct: 170  ---QKVDAKIIELDKNRN---NVVLSRRAWLEETQSTVRHDF-------------LQTLQ 210

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
               +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+
Sbjct: 211  KGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVTVGDEVTVEVLDVD 269

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGL 1485
               +RV ++LK +      +    + +  HV G IV G++ ++  +G F+ +E+  + GL
Sbjct: 270  MDRERVSLSLKAT-----QEDPWQHFARTHVIGQIVPGKVTKLVPFGAFVRVED-GIEGL 323

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1537
             H+SEL+  HVD  E +    E V VK++ +D E+RRISL +K +    D D
Sbjct: 324  VHISELAVRHVDLPEQVVTVDETVYVKVIDIDLERRRISLSLKQANEGVDPD 375



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPNEVVTVGDEVTVEVLD 267

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G  
Sbjct: 268 VDMDRERVSLSLKATQEDPWQHFARTHVIGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +     P  +  V + V  +++      RRI+LS 
Sbjct: 325 HISELAVRHVDLPEQVVTVDETVYVKVIDIDLERRRISLSL 365



 Score = 47.8 bits (112), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 164/389 (42%), Gaps = 39/389 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    +V      + +     +S    V P +  +VG  +   VL  + 
Sbjct: 39  GDIVEGTIVKVDRDEVLVDIGYKTEGVILSRELSIKHDVDPAEVVEVGDPIEALVLTKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  +  +  G + ++ K G  V    G++GF P S
Sbjct: 99  KDGRLMLSKKRAQYERAWGDIEKVKE--NEGVVTGTVIEVVKGGLIVDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ V  +I+      +++  SRR  L       R      ++
Sbjct: 155 LVEMRRVRDLTP----YIGQKVDAKIIELDKNRNNVVLSRRAWLEETQSTVRHDFLQTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H      V+  G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPN---EVVTVGDEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  Q      +H+    +V G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQHFAR--THV-IGQIVPGKVTKLVPFGAFVRVEDGIE 321

Query: 787 GFAPRSK-AVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASFM 843
           G    S+ AV  +  DL  +   V ++V   ++D++ E  RI+LSLKQ+      DA   
Sbjct: 322 GLVHISELAV--RHVDLPEQVVTVDETVYVKVIDIDLERRRISLSLKQANEGVDPDA--- 376

Query: 844 QEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
            E FL      M+Q    +G+  K+ EGF
Sbjct: 377 -EEFLDPALYGMVQEYDEDGN-YKYPEGF 403


>gi|423349119|ref|ZP_17326775.1| ribosomal protein S1 [Scardovia wiggsiae F0424]
 gi|393703348|gb|EJD65549.1| ribosomal protein S1 [Scardovia wiggsiae F0424]
          Length = 493

 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 174/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V K+D++  LL I       + ++   +     P ++ E      +G  +   
Sbjct: 36   GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDIAPEDVVE------VGDTI--E 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1278
             L + KE K  RL+L   +        D+        I E D +V G + + + G  GL+
Sbjct: 88   ALVVTKEDKDGRLILSKKRAQYERAWGDVEK------IKEADGVVEGTVIEAVKG--GLI 139

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V IG   +      E++ +    P  G    Q ++ K+LE+ +      +V LS R  L+
Sbjct: 140  VDIGLRGFLPASLVEMRRVRDLAPYIG----QKIQAKILELDKNRN---NVVLSRREYLE 192

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
               S                   +  L    + +G + ++ + G F+ L   +D  + +S
Sbjct: 193  ETQSEVRETF-------------LSQLKKGQVREGTISSLVNFGAFVDLG-GVDGLIHVS 238

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV- 1457
             LS  +++ P +   +G  V   VL V+   +R+ ++LK++      +    + +  HV 
Sbjct: 239  ELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKST-----QEDPWQHFARTHVP 293

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G IV G+I ++  +G+F+++++  + GL H+SEL+  HV+N ET+ + GE V VK++ VD
Sbjct: 294  GQIVKGKITKIVQFGVFVSVDD-GIEGLIHISELANRHVENPETVVKPGETVFVKVIDVD 352

Query: 1518 KEKRRISLGMKSS 1530
             ++RRISL +K +
Sbjct: 353  LDRRRISLSLKQA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G V +G + ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQVREGTISSLVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI+++ K T          ++       I  G ITKI + G FV   +G++G
Sbjct: 263 LDVDLDRERISLSLKSTQEDPWQHFARTHVPGQ---IVKGKITKIVQFGVFVSVDDGIEG 319

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL       P ++   G+ V  +++      RRI+LS 
Sbjct: 320 LIHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSL 362



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 150/374 (40%), Gaps = 44/374 (11%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +     P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDIAPEDVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 694
            ++  +++      R+ LS        +  D+ K+     GVV+     AV   +I    
Sbjct: 85  TIEALVVTKEDKDGRLILSKKRAQYERAWGDVEKIKE-ADGVVEGTVIEAVKGGLIVDIG 143

Query: 695 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL- 752
            +G +P    A  +E   V       G +   ++L LD   +N++LS +  L  +  ++ 
Sbjct: 144 LRGFLP----ASLVEMRRVRDLAPYIGQKIQAKILELDKNRNNVVLSRREYLEETQSEVR 199

Query: 753 PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
            +  S +    V  G + +++  G FV  LG + G    S+         S+   VG  V
Sbjct: 200 ETFLSQLKKGQVREGTISSLVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 813 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
              +LDV+ +  RI+LSLK     ST     Q HF          +  H           
Sbjct: 259 TVEVLDVDLDRERISLSLK-----STQEDPWQ-HF----------ARTH----------- 291

Query: 873 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAIL 925
           + G +++GK+ +   FGV VS ++   + G I   +LA   VE+       G  +   ++
Sbjct: 292 VPGQIVKGKITKIVQFGVFVSVDDG--IEGLIHISELANRHVENPETVVKPGETVFVKVI 349

Query: 926 DVAKAERLVDLSLK 939
           DV    R + LSLK
Sbjct: 350 DVDLDRRRISLSLK 363



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 171/401 (42%), Gaps = 70/401 (17%)

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTA 1119
            ++D G LV+  + +I   E+ L  G    G I   E++  K    E++    ++G T+ A
Sbjct: 32   NFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDIAPEDVV---EVGDTIEA 88

Query: 1120 RIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
             ++ K +K                 L +S+  ++           +R  G V K+     
Sbjct: 89   LVVTKEDKD--------------GRLILSKKRAQY----------ERAWGDVEKIKEADG 124

Query: 1180 LL--TISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLL 1230
            ++  T+   +K  L I+D     + P+ L E +R      +IG+ +   +L ++K +  +
Sbjct: 125  VVEGTVIEAVKGGL-IVDIGLRGFLPASLVEMRRVRDLAPYIGQKIQAKILELDKNRNNV 183

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYG 1287
             L  R + +       +  ++  +TF+ +   G +  G IS +++   G  V +G  + G
Sbjct: 184  VLSRREYLE-------ETQSEVRETFLSQLKKGQVREGTISSLVNF--GAFVDLG-GVDG 233

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1347
             +H +EL    +  P      G  V  +VL++         + LSL+S+ +         
Sbjct: 234  LIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRE---RISLSLKSTQE--------- 281

Query: 1348 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1407
                   P +H  +     P  IV+G +  +   G F+ +   ++  + +S L++ +VE+
Sbjct: 282  ------DPWQHFARTH--VPGQIVKGKITKIVQFGVFVSVDDGIEGLIHISELANRHVEN 333

Query: 1408 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
            PE     G+ V  +V+ V+   +R+ ++LK ++      SE
Sbjct: 334  PETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPASE 374



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 151/355 (42%), Gaps = 29/355 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + + P    +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDIAPEDVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGDVEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    +K
Sbjct: 152 LVEMRRVRDLAP----YIGQKIQAKILELDKNRNNVVLSRREYLEETQSEVRETFLSQLK 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  G +  +      V +   G   G I    L+  H++H +    V+K G +   +
Sbjct: 208 KGQVREGTISSLVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  Q      +H+ P  +V G +  I++ G FV     + 
Sbjct: 262 VLDVDLDRERISLSLKSTQEDPWQHFAR--THV-PGQIVKGKITKIVQFGVFVSVDDGIE 318

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
           G    S+  +    +       G++V   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 319 GLIHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDPAS 373


>gi|311742677|ref|ZP_07716486.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272]
 gi|311314305|gb|EFQ84213.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272]
          Length = 489

 Score = 94.4 bits (233), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 172/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + K+D +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 39   GDIVDGTIVKIDRDEVLLDIGYKTEGVIPSRELSIKHDIDPNEV------VALGDTVEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        DI     +  + EG ++   + K     GGL++
Sbjct: 93   VL--QKEDKEGRLILSKKRAQYERAWGDIEKIKAEDGVVEGTVI--EVVK-----GGLIM 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +   DP  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLDPYIG----QKIEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S    +  T+             L    + +G + ++ + G F+ L   +D  V +S 
Sbjct: 197  TQSAVRQNFLTE-------------LKKGQVRKGVISSIVNFGAFVDLG-GVDGLVHVSE 242

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +    + +  H +G
Sbjct: 243  LSWKHIDHPNEVVQVGDEVTVEVLDVDMDRERVSLSLKAT-----QEDPWQHFARTHQIG 297

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G+ V VKI+ +D 
Sbjct: 298  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQIGDSVMVKIIDIDL 356

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 357  ERRRISLSLKQA 368



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 111/250 (44%), Gaps = 31/250 (12%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R      +IG+ +   ++ ++K +  + L  R + +    +T      N  T
Sbjct: 152  PASLVEMRRVRDLDPYIGQKIEAKIIELDKNRNNVVLSRRAWLE----QTQSAVRQNFLT 207

Query: 1256 FIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
             + +G +  G IS I++   G  V +G  + G VH +EL    +  P      G  V  +
Sbjct: 208  ELKKGQVRKGVISSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPNEVVQVGDEVTVE 264

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            VL++         V LSL+++ +                P +H  +   +    IV G V
Sbjct: 265  VLDVDMDRE---RVSLSLKATQE---------------DPWQHFARTHQI--GQIVPGKV 304

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
              +   G F+ +   ++  V +S L++ +VE PE+   IG  V  +++ ++   +R+ ++
Sbjct: 305  TKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQIGDSVMVKIIDIDLERRRISLS 364

Query: 1436 LKTSDSRTAS 1445
            LK ++   A+
Sbjct: 365  LKQANETEAA 374



 Score = 46.6 bits (109), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 147/351 (41%), Gaps = 37/351 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ +D    ++      + + P   +S    + P +   +G  +   VL  + 
Sbjct: 39  GDIVDGTIVKIDRDEVLLDIGYKTEGVIPSRELSIKHDIDPNEVVALGDTVEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +A D ++  G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKI-KAEDGVV-EGTVIEVVKGGLIMDI--GLRGFLPAS 154

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R +  
Sbjct: 155 LVEMRRVRDLDP--------YIGQKIEAKIIELDKNRNNVVLSRRAWLEQTQSAVRQNFL 206

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             +K G +  GV+  +      V +   G   G +    L+  H++H      V++ G E
Sbjct: 207 TELKKGQVRKGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPN---EVVQVGDE 260

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
              ++L +D +   + LS K +  +  Q     A       +V G V  ++  G FVR  
Sbjct: 261 VTVEVLDVDMDRERVSLSLKATQEDPWQHF---ARTHQIGQIVPGKVTKLVPFGAFVRVE 317

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             + G    S+  +       +   +G SV   I+D++ E  RI+LSLKQ+
Sbjct: 318 EGIEGLVHISELAERHVEIPEQVVQIGDSVMVKIIDIDLERRRISLSLKQA 368


>gi|425734868|ref|ZP_18853185.1| 30S ribosomal protein S1 [Brevibacterium casei S18]
 gi|425480804|gb|EKU47968.1| 30S ribosomal protein S1 [Brevibacterium casei S18]
          Length = 492

 Score = 94.4 bits (233), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 183/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
            S++P  + V++IG+   F    D +I     G  V G V KVD +  L+ I    +  + 
Sbjct: 8    SVQPKQVAVNDIGTAEDFLAAVDETIKYFNDGDIVEGTVVKVDRDEVLVDIGYKTEGVVL 67

Query: 1193 I----LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
                 +    +P E+ E      +G  +   VL   KE K  RL+L   +        DI
Sbjct: 68   SRELSIKHDVDPGEVVE------VGDPIEALVL--QKEDKEGRLMLSKKRAQYERAWGDI 119

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
                 +    E  +V G + +++ G  GL+V IG   +      E++ +    P  G   
Sbjct: 120  -----EKIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLAPYIG--- 169

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
             Q V+ K++E+ +      +V LS R+ L+   S    D              ++ L   
Sbjct: 170  -QQVEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRHDF-------------LQTLQKG 212

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 213  QVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPGEVVTVGDEVTVEVLDVDMD 271

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  HV G IV G++ ++  +G F+ +E+  + GL H
Sbjct: 272  RERVSLSLKAT-----QEDPWQHFARTHVIGQIVPGKVTKLVPFGAFVRVED-GIEGLVH 325

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+  HVD  E +    E + VK++ +D E+RRISL +K +
Sbjct: 326  ISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRISLSLKQA 368



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  PG+   VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPGEVVTVGDEVTVEVLD 267

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G  
Sbjct: 268 VDMDRERVSLSLKATQEDPWQHFARTHVIGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +     P  +  V + +  +++      RRI+LS 
Sbjct: 325 HISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRISLSL 365



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 150/394 (38%), Gaps = 46/394 (11%)

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           V+ K++ V    T      A+  +     D  I  G + K+++    V      +G    
Sbjct: 9   VQPKQVAVNDIGTAEDFLAAVDETIKYFNDGDIVEGTVVKVDRDEVLVDIGYKTEGVVLS 68

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSL 672
            EL +    +P  +  VG  ++  ++       R+ LS        +  D+ K+     +
Sbjct: 69  RELSIKHDVDPGEVVEVGDPIEALVLQKEDKEGRLMLSKKRAQYERAWGDIEKIKEEDGV 128

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
           V+G V  V    ++V +  +G+   ++        +E   V       G + + +++ LD
Sbjct: 129 VTGTVIEVVKGGLIVDIGLRGFLPASL--------VEMRRVRDLAPYIGQQVEAKIIELD 180

Query: 732 NESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
              +N++LS +  L  +  ++  D    +    V  G V +I+  G FV  LG + G   
Sbjct: 181 KNRNNVVLSRRAWLEQTQSEVRHDFLQTLQKGQVRPGVVSSIVNFGAFVD-LGGVDGLVH 239

Query: 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 850
            S+          +   VG  V   +LDV+ +  R++LSLK +           +HF   
Sbjct: 240 VSELSWKHIDHPGEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDP------WQHF--- 290

Query: 851 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT----- 905
                  +  H           +IG ++ GKV +   FG  V  E+  +    I+     
Sbjct: 291 -------ARTH-----------VIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVR 332

Query: 906 HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           H  L    V     I   ++D+    R + LSLK
Sbjct: 333 HVDLPEQVVSVDETIYVKVIDIDLERRRISLSLK 366



 Score = 48.1 bits (113), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 166/388 (42%), Gaps = 37/388 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    +V      + +     +S    V PG+  +VG  +   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLVDIGYKTEGVVLSRELSIKHDVDPGEVVEVGDPIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 99  KEGRLMLSKKRAQYERAWGDIEKIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ V+ +I+      +++  SRR  L       R      ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRHDFLQTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H      V+  G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVTVGDEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  Q      +H+    +V G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQHFAR--THV-IGQIVPGKVTKLVPFGAFVRVEDGIE 321

Query: 787 GFAPRSK-AVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           G    S+ AV  +  DL  +   V +++   ++D++ E  RI+LSLKQ+       +   
Sbjct: 322 GLVHISELAV--RHVDLPEQVVSVDETIYVKVIDIDLERRRISLSLKQANEGVDPEA--- 376

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGF 872
           E FL      M Q    +G+  K+ EGF
Sbjct: 377 EEFLDPALYGMPQEYDEDGN-YKYPEGF 403



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 53/256 (20%), Positives = 115/256 (44%), Gaps = 31/256 (12%)

Query: 1197 AYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             + P+ L E +R      +IG+ V   ++ ++K +  + L  R +   +     ++ +D 
Sbjct: 149  GFLPASLVEMRRVRDLAPYIGQQVEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRHDF 205

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            +QT + +G +  G +S I++   G  V +G  + G VH +EL    +  P      G  V
Sbjct: 206  LQT-LQKGQVRPGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPGEVVTVGDEV 261

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         V LSL+++ +                P +H  +   +    IV 
Sbjct: 262  TVEVLDVDMDRE---RVSLSLKATQE---------------DPWQHFARTHVI--GQIVP 301

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L+  +V+ PE+   + + +  +V+ ++   +R+
Sbjct: 302  GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRI 361

Query: 1433 EVTLKTSDSRTASQSE 1448
             ++LK ++     ++E
Sbjct: 362  SLSLKQANEGVDPEAE 377


>gi|159899614|ref|YP_001545861.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
            DSM 785]
 gi|159892653|gb|ABX05733.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
          Length = 501

 Score = 94.4 bits (233), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 7/184 (3%)

Query: 1353 DTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1412
            D  G    ++ DL   M + G V +    G F+ +    D  V +S +SD  +ESP    
Sbjct: 90   DEDGTTPRRLADLHAGMELDGKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVV 149

Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSDS----RTASQSEINN--LSNLHVGDIVIGQIK 1466
             IG +V  RV SV+P ++R+ +T+++  S    R   + E+NN  L  L  GD+V G + 
Sbjct: 150  QIGDIVKVRVKSVDPDARRISLTMRSPRSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVN 209

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
             +  +G+F+ I      GL H+SELSE+ V+  E     G+    ++L+VD   +RISL 
Sbjct: 210  GIAPFGVFVDI-GVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVLEVDTGAQRISLS 268

Query: 1527 MKSS 1530
            ++ +
Sbjct: 269  LRRA 272



 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 133/277 (48%), Gaps = 18/277 (6%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            +H G  + G+++   + + G+ V IG    G VH +E+ +  +  P      G  VK +V
Sbjct: 102  LHAGMELDGKVTS--TALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVVQIGDIVKVRV 159

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
              +    R    + L++RS         S         P  + +K+ +L P  +V G V 
Sbjct: 160  KSVDPDAR---RISLTMRSP-------RSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVN 209

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             +   G F+ +    D  V +S LS+  VE  E    +G+    RVL V+  ++R+ ++L
Sbjct: 210  GIAPFGVFVDIGVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVLEVDTGAQRISLSL 269

Query: 1437 KTS-----DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
            + +     +   A +    NL  +  G ++ G++  +  +G F+ +      GL H+SEL
Sbjct: 270  RRAKEDFQERPKAPRRREVNLDVIAPGTVLDGKVSGIAPFGAFVDL-GVGRDGLVHISEL 328

Query: 1492 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            SE  V  ++ + + G+ VKV++L+VD + +RISL M+
Sbjct: 329  SEGRVGKVDDVVKVGDPVKVRVLEVDPDSKRISLTMR 365



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 17/236 (7%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLR-PFQDGI--SDKTVDISNDNMQTFIHEGDIVGGRI 1267
             IG  V   V S++ + + + L +R P  +G   + K  +++ND +   +  GD+V G +
Sbjct: 150  QIGDIVKVRVKSVDPDARRISLTMRSPRSEGRRRAPKRPEVNNDKLGE-LKPGDLVDGTV 208

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            + I     G+ V IG    G VH +EL    V         GQ    +VLE+     G  
Sbjct: 209  NGIAPF--GVFVDIGVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVLEVDT---GAQ 263

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
             + LSLR +          D       P +    ++ ++P  ++ G V  +   G F+ L
Sbjct: 264  RISLSLRRA--------KEDFQERPKAPRRREVNLDVIAPGTVLDGKVSGIAPFGAFVDL 315

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1443
                D  V +S LS+G V   +    +G  V  RVL V+P SKR+ +T++  ++ T
Sbjct: 316  GVGRDGLVHISELSEGRVGKVDDVVKVGDPVKVRVLEVDPDSKRISLTMRVEEAPT 371



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 27/269 (10%)

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G +T    +G FV    G  G    SE+       P+ +  +G +VK R+ S  P +RRI
Sbjct: 110 GKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVVQIGDIVKVRVKSVDPDARRI 169

Query: 651 NLSF--------MMKPTR--VSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGYSK-G 697
           +L+            P R  V+ D L  +K G LV G V+ + P  V V +   G  K G
Sbjct: 170 SLTMRSPRSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVNGIAPFGVFVDI---GVGKDG 226

Query: 698 TIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDAS 757
            +    L+++          +   Y F ++L +D  +  + LS + +     Q+ P    
Sbjct: 227 LVHISELSENRVEKAEDAVTVGQSYTF-RVLEVDTGAQRISLSLRRAK-EDFQERPKAPR 284

Query: 758 H-------IHPNSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVDGQRADLSKTYYVG 809
                   I P +V+ G V  I   G FV   +GR  G    S+  +G+   +     VG
Sbjct: 285 RREVNLDVIAPGTVLDGKVSGIAPFGAFVDLGVGR-DGLVHISELSEGRVGKVDDVVKVG 343

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSST 838
             V+  +L+V+ ++ RI+L+++     +T
Sbjct: 344 DPVKVRVLEVDPDSKRISLTMRVEEAPTT 372



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 16/178 (8%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           ++KPG +V G V  +  FG  V    G   L  +  +SE  + K      VG    FRVL
Sbjct: 197 ELKPGDLVDGTVNGIAPFGVFVDIGVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVL 256

Query: 555 GVKS--KRITVTHKKT---------LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 603
            V +  +RI+++ ++            + +   L   A  T   +  G ++ I   G FV
Sbjct: 257 EVDTGAQRISLSLRRAKEDFQERPKAPRRREVNLDVIAPGT---VLDGKVSGIAPFGAFV 313

Query: 604 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK--PT 659
               G  G    SEL      +   +  VG  VK R++   P S+RI+L+  ++  PT
Sbjct: 314 DLGVGRDGLVHISELSEGRVGKVDDVVKVGDPVKVRVLEVDPDSKRISLTMRVEEAPT 371



 Score = 42.7 bits (99), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 20/209 (9%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +D+  GM + GKV +   +G  V    G   L  +  MS+  I  P    ++G  +  RV
Sbjct: 100 ADLHAGMELDGKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVVQIGDIVKVRV 159

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL-------ITHGWITKIEKHGCFVR 604
             V   ++RI++T +    + +           D+L       +  G +  I   G FV 
Sbjct: 160 KSVDPDARRISLTMRSPRSEGRRRAPKRPEVNNDKLGELKPGDLVDGTVNGIAPFGVFVD 219

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS-------FMMK 657
              G  G    SEL  +   +      VGQ    R++     ++RI+LS       F  +
Sbjct: 220 IGVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRVLEVDTGAQRISLSLRRAKEDFQER 279

Query: 658 PT----RVSEDDLVKLGSLVSGVVDVVTP 682
           P     R    D++  G+++ G V  + P
Sbjct: 280 PKAPRRREVNLDVIAPGTVLDGKVSGIAP 308


>gi|383807350|ref|ZP_09962910.1| 30S ribosomal protein S1 [Candidatus Aquiluna sp. IMCC13023]
 gi|383298704|gb|EIC91319.1| 30S ribosomal protein S1 [Candidatus Aquiluna sp. IMCC13023]
          Length = 485

 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 191/406 (47%), Gaps = 59/406 (14%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKA--- 1189
            + KP  + V++IGS+  F    + ++     G  ++G V K+D +  LL +    +    
Sbjct: 6    TAKPVQIAVNDIGSEADFLAAVEATLKFFNDGDLISGTVVKIDRDEVLLDVGYKTEGVIP 65

Query: 1190 --QLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1247
              +L I   A +P+++        +G A+   VL   KE K  RL+L   +        D
Sbjct: 66   SRELSIRQDA-DPNDI------VKVGDAIEALVL--QKEDKEGRLILSKKRAQYERAWGD 116

Query: 1248 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            +        I E D +V G + +++ G  G++V IG   +      EL+ +    P  G 
Sbjct: 117  VER------IKEADGVVTGTVIEVVKG--GVIVDIGLRGFLPASLIELRRVRDLGPYLGT 168

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
            +    V+ K+LE+ +      +V LS R+ L+   S N S               + DL 
Sbjct: 169  E----VEAKILELDKNRN---NVVLSRRALLEQSQSENRSTF-------------LNDLV 208

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
               +  G V ++ + G FI L   +D  V +S LS  ++E   +   +G+ V   VL V+
Sbjct: 209  KGQVRTGVVSSIVNFGAFIDLG-GVDGLVHVSELSWKHIEHASEVVEVGQEVTVEVLEVD 267

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVG 1484
               +RV ++LK      A+Q +   L +  H +G  + G++ ++  +G F+ + +  + G
Sbjct: 268  QERERVSLSLK------ATQEDPWQLFARTHAIGQYIPGKVTKIVPFGAFVRVAD-GIEG 320

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L H+SELS  HV++ + +    ++V VK++ +D E+RRISL +K +
Sbjct: 321  LVHISELSSKHVEHADQVVTVNQEVFVKLIDIDLERRRISLSLKQA 366



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 151/352 (42%), Gaps = 37/352 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G ++ G V+ +D    ++      + + P   +S  +   P    KVG  +   VL  + 
Sbjct: 37  GDLISGTVVKIDRDEVLLDVGYKTEGVIPSRELSIRQDADPNDIVKVGDAIEALVLQKED 96

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA D ++T G + ++ K G  V    G++GF P S
Sbjct: 97  KEGRLILSKKRAQYERAWGDVERIKEA-DGVVT-GTVIEVVKGGVIVDI--GLRGFLPAS 152

Query: 617 ELGL----DPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVS-EDD 665
            + L    D G       ++G  V+ +I+      +++  SRR  L       R +  +D
Sbjct: 153 LIELRRVRDLGP------YLGTEVEAKILELDKNRNNVVLSRRALLEQSQSENRSTFLND 206

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEF 724
           LVK G + +GVV  +      + +   G   G +    L+  H+EHA+    V++ G E 
Sbjct: 207 LVK-GQVRTGVVSSIVNFGAFIDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEV 259

Query: 725 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFL 782
             ++L +D E   + LS K +  +  Q      +  H     + G V  I+  G FVR  
Sbjct: 260 TVEVLEVDQERERVSLSLKATQEDPWQLF----ARTHAIGQYIPGKVTKIVPFGAFVRVA 315

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             + G    S+          +   V Q V   ++D++ E  RI+LSLKQ+ 
Sbjct: 316 DGIEGLVHISELSSKHVEHADQVVTVNQEVFVKLIDIDLERRRISLSLKQAL 367


>gi|260903786|ref|ZP_05912108.1| 30S ribosomal protein S1 [Brevibacterium linens BL2]
          Length = 495

 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 183/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
            S++P  + V++IG+   F    D +I     G  V G V KVD +  L+ I    +  + 
Sbjct: 8    SVQPKQVAVNDIGTAEDFLAAVDETIKYFNDGDIVEGTVVKVDRDEVLVDIGYKTEGVVL 67

Query: 1193 I----LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
                 +    +P E+ E      +G  +   VL   KE K  RL+L   +        DI
Sbjct: 68   SRELSIKHDVDPGEVVE------VGDEIEALVL--QKEDKEGRLMLSKKRAQYERAWGDI 119

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
                 +    +  +V G + +++ G  GL+V IG   +      E++ +    P  G   
Sbjct: 120  -----EKIKEDNGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLAPYIG--- 169

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
             Q V+ K++E+ +      +V LS R+ L+   S    D              ++ L   
Sbjct: 170  -QQVEAKIIELDKNRN---NVVLSRRAWLEQTQSAVRHDF-------------LQTLQKG 212

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 213  QVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPGEVVTVGDEVTVEVLDVDMD 271

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  HV G IV G++ ++  +G F+ +E+  + GL H
Sbjct: 272  RERVSLSLKAT-----QEDPWQHFARTHVIGQIVPGKVTKLVPFGAFVRVED-GIEGLVH 325

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+  HVD  E +    E + VK++ +D E+RRISL +K +
Sbjct: 326  ISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRISLSLKQA 368



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  PG+   VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPGEVVTVGDEVTVEVLD 267

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G  
Sbjct: 268 VDMDRERVSLSLKATQEDPWQHFARTHVIGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +     P  +  V + +  +++      RRI+LS 
Sbjct: 325 HISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRISLSL 365



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 165/388 (42%), Gaps = 37/388 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    +V      + +     +S    V PG+  +VG E+   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLVDIGYKTEGVVLSRELSIKHDVDPGEVVEVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G++GF P S
Sbjct: 99  KEGRLMLSKKRAQYERAWGDIEKIKE--DNGVVTGTVIEVVKGGLIVDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ V+ +I+      +++  SRR  L       R      ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQVEAKIIELDKNRNNVVLSRRAWLEQTQSAVRHDFLQTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H      V+  G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVTVGDEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  Q      +H+    +V G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQHFAR--THV-IGQIVPGKVTKLVPFGAFVRVEDGIE 321

Query: 787 GFAPRSK-AVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           G    S+ AV  +  DL  +   V +++   ++D++ E  RI+LSLKQ+       +   
Sbjct: 322 GLVHISELAV--RHVDLPEQVVSVDETIYVKVIDIDLERRRISLSLKQANEGVDPEA--- 376

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGF 872
           + FL      M Q    +G+  K+ EGF
Sbjct: 377 DEFLDPALYGMPQEYDEDGN-YKYPEGF 403



 Score = 48.1 bits (113), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 149/394 (37%), Gaps = 46/394 (11%)

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           V+ K++ V    T      A+  +     D  I  G + K+++    V      +G    
Sbjct: 9   VQPKQVAVNDIGTAEDFLAAVDETIKYFNDGDIVEGTVVKVDRDEVLVDIGYKTEGVVLS 68

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSL 672
            EL +    +P  +  VG  ++  ++       R+ LS        +  D+ K+     +
Sbjct: 69  RELSIKHDVDPGEVVEVGDEIEALVLQKEDKEGRLMLSKKRAQYERAWGDIEKIKEDNGV 128

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
           V+G V  V    ++V +  +G+   ++        +E   V       G + + +++ LD
Sbjct: 129 VTGTVIEVVKGGLIVDIGLRGFLPASL--------VEMRRVRDLAPYIGQQVEAKIIELD 180

Query: 732 NESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
              +N++LS +  L  +   +  D    +    V  G V +I+  G FV  LG + G   
Sbjct: 181 KNRNNVVLSRRAWLEQTQSAVRHDFLQTLQKGQVRPGVVSSIVNFGAFVD-LGGVDGLVH 239

Query: 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 850
            S+          +   VG  V   +LDV+ +  R++LSLK +           +HF   
Sbjct: 240 VSELSWKHIDHPGEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDP------WQHF--- 290

Query: 851 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT----- 905
                  +  H           +IG ++ GKV +   FG  V  E+  +    I+     
Sbjct: 291 -------ARTH-----------VIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVR 332

Query: 906 HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           H  L    V     I   ++D+    R + LSLK
Sbjct: 333 HVDLPEQVVSVDETIYVKVIDIDLERRRISLSLK 366



 Score = 41.2 bits (95), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 111/248 (44%), Gaps = 31/248 (12%)

Query: 1197 AYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             + P+ L E +R      +IG+ V   ++ ++K +  + L  R +   +      + +D 
Sbjct: 149  GFLPASLVEMRRVRDLAPYIGQQVEAKIIELDKNRNNVVLSRRAW---LEQTQSAVRHDF 205

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            +QT + +G +  G +S I++   G  V +G  + G VH +EL    +  P      G  V
Sbjct: 206  LQT-LQKGQVRPGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPGEVVTVGDEV 261

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         V LSL+++ +                P +H  +   +    IV 
Sbjct: 262  TVEVLDVDMDRE---RVSLSLKATQE---------------DPWQHFARTHVI--GQIVP 301

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L+  +V+ PE+   + + +  +V+ ++   +R+
Sbjct: 302  GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVSVDETIYVKVIDIDLERRRI 361

Query: 1433 EVTLKTSD 1440
             ++LK ++
Sbjct: 362  SLSLKQAN 369


>gi|300781295|ref|ZP_07091149.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
 gi|300533002|gb|EFK54063.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
          Length = 491

 Score = 94.0 bits (232), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 184/395 (46%), Gaps = 49/395 (12%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            + +++IGS   F    D +I     G  VTG V KVD++  LL I    K +  IL    
Sbjct: 9    VAINDIGSSEEFLAAVDATIKYFNDGDIVTGTVVKVDHDEVLLDIG--YKTEGVILSREL 66

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL--RPFQDGISDKTVDISNDNMQTF 1256
                  +      IG  +   VL+  KE K  RL+L  +  Q   +  T++    N Q  
Sbjct: 67   SIKHDIDPDEVVQIGDEIDALVLT--KEDKEGRLLLSKKRAQYERAWGTIEELQKNDQP- 123

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
                  V G + +++ G  GL++ IG   +      E++ +   DP  G    Q ++ K+
Sbjct: 124  ------VTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG----QELEAKI 171

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            +E+ +      +V LS R+ L+   S   SD              +  L    + +G V 
Sbjct: 172  IELDKHRN---NVVLSRRAYLEETQSAVRSDF-------------LHQLEKGQVRKGVVS 215

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++L
Sbjct: 216  SIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSL 274

Query: 1437 KTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1495
            K +      +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++ H
Sbjct: 275  KAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRH 328

Query: 1496 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            V+  + +   G++V VK++ +D E+RRISL +K +
Sbjct: 329  VEVPDQVVEVGQEVMVKVIDIDLERRRISLSLKQA 363



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LEKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  +  VGQ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVEVGQEVMVKVIDIDLERRRISLSL 360



 Score = 45.4 bits (106), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + +     +S    + P +  ++G E+   VL  + 
Sbjct: 34  GDIVTGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDIDPDEVVQIGDEIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +  D+ +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLLLSKKRAQYERAWGTIEEL-QKNDQPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKHRNNVVLSRRAYLEETQSAVRSDFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLEKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VGQ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVEVGQEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            +++E      +  M  S    G+ +          +W+EG+
Sbjct: 366 DYIEE--FDPSRYGMADSYDEQGNYIFPEGFDPETNEWMEGY 405



 Score = 40.8 bits (94), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 114/259 (44%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R      +IG+ +   ++ ++K +  + L  R +   + + 
Sbjct: 136  LILDIGLRGFLPASLVEMRRVRDLDPYIGQELEAKIIELDKHRNNVVLSRRAY---LEET 192

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
               + +D    F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 193  QSAVRSD----FLHQLEKGQVRKGVVSSIVNF--GAFVDLGG-VDGLVHVSELSWKHIDH 245

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 246  PSEVVTVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRVFAR 287

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
                +   IV G V  +   G F+ +   ++  V +S L+  +VE P++   +G+ V  +
Sbjct: 288  TH--AVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVEVGQEVMVK 345

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK +D
Sbjct: 346  VIDIDLERRRISLSLKQAD 364


>gi|218290944|ref|ZP_03495001.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239109|gb|EED06312.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 385

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 168/386 (43%), Gaps = 57/386 (14%)

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISR----HLKAQLFILDSAYEPSELQEFQRRF 1210
            +  +  V  G  VTG V  VD+    + +      H+  Q         PS++       
Sbjct: 8    MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDV------V 61

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
             +G  VT  VL ++ E   + L  R  +   +        + MQ  +  G+ +   I  +
Sbjct: 62   SVGSTVTAQVLKVDMESGHVTLSKRRAEQASA-------WERMQQLLESGEPIEVEIRDV 114

Query: 1271 LSGVGGLVVQIG-----PHLYGRVHFTE-LKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
            + G  GLV  +G     P      HF E L+            +GQ ++ KV+E+     
Sbjct: 115  VKG--GLVADVGVRAFIPASLVDRHFVENLEQF----------KGQKLRAKVVEVDPHKN 162

Query: 1325 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1384
                  LS R+ L+  S   +  L              E+L P  +++G V+ +T  G F
Sbjct: 163  KLI---LSRRAVLEEESEARARKL-------------FEELKPGDVIEGTVQRLTDFGAF 206

Query: 1385 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1444
            + +    D  V +S LS  +V  P +    G  V  RVL V+P + R+ +++K +     
Sbjct: 207  VDVG-GADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAA----L 261

Query: 1445 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
             +         H GD+V G ++RV  +G F+ +    L GL HVS++S +HVD    + +
Sbjct: 262  PEPWETYAHEFHPGDVVQGVVRRVVDFGAFVEL-RPGLEGLVHVSQISNEHVDKPSDVLQ 320

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G++V V++L VD E++RISL M+ S
Sbjct: 321  PGQEVTVRVLSVDPERKRISLSMRDS 346



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 145/358 (40%), Gaps = 31/358 (8%)

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           + T + V+ G VV G+V AVD  G  V  P G +       +S      P     VG+ +
Sbjct: 8   MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTV 67

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVR 604
             +VL V  +   VT  K     + A  +S  E   +L+  G   ++E     K G    
Sbjct: 68  TAQVLKVDMESGHVTLSK-----RRAEQASAWERMQQLLESGEPIEVEIRDVVKGGLVAD 122

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
              GV+ F P S +  D     +     GQ ++ +++   P   ++ LS        SE 
Sbjct: 123 V--GVRAFIPASLV--DRHFVENLEQFKGQKLRAKVVEVDPHKNKLILSRRAVLEEESEA 178

Query: 665 DLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 717
              KL      G ++ G V  +T     V V   G + G +    L+  H+ H +    V
Sbjct: 179 RARKLFEELKPGDVIEGTVQRLTDFGAFVDV---GGADGLVHISELSFSHVNHPS---EV 232

Query: 718 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
           ++ G     ++L +D E+  + LS K +L    +     A   HP  VV G V  +++ G
Sbjct: 233 VREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETY---AHEFHPGDVVQGVVRRVVDFG 289

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            FV     L G    S+  +      S     GQ V   +L V+ E  RI+LS++ S 
Sbjct: 290 AFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSS 347



 Score = 45.4 bits (106), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 156/379 (41%), Gaps = 52/379 (13%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII- 1122
            G +V  E+T +    + +    G+ G I   E++        ++ S   +G TVTA+++ 
Sbjct: 17   GDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVS---VGSTVTAQVLK 73

Query: 1123 --AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
               +S    + K    + S    M  + E G  +  E  DV  G  V     +     +L
Sbjct: 74   VDMESGHVTLSKRRAEQASAWERMQQLLESGEPIEVEIRDVVKGGLVADVGVRAFIPASL 133

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
              + RH     F+         L++F+     G+ +   V+ ++  K  L L  R     
Sbjct: 134  --VDRH-----FV-------ENLEQFK-----GQKLRAKVVEVDPHKNKLILSRR----A 170

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
            + ++  +     +   +  GD++ G + ++     G  V +G    G VH +EL    V+
Sbjct: 171  VLEEESEARARKLFEELKPGDVIEGTVQRLTDF--GAFVDVG-GADGLVHISELSFSHVN 227

Query: 1301 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1360
             P     EG  VK +VL +         + LS++++L     T +               
Sbjct: 228  HPSEVVREGDRVKVRVLRVDPE---AGRISLSIKAALPEPWETYA--------------- 269

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
               +  P  +VQG V+ V   G F+ L   L+  V +S +S+ +V+ P      G+ V  
Sbjct: 270  --HEFHPGDVVQGVVRRVVDFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTV 327

Query: 1421 RVLSVEPLSKRVEVTLKTS 1439
            RVLSV+P  KR+ ++++ S
Sbjct: 328  RVLSVDPERKRISLSMRDS 346



 Score = 41.2 bits (95), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 153/363 (42%), Gaps = 36/363 (9%)

Query: 221 LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGID----VK 275
           L + L+   V+EG V+T  V +++DHG  +   LP  + G +    L+   G      V 
Sbjct: 5   LREMLTDAAVREGDVVTGEVTAVDDHGVTV--ALPHGYEGHISPQELSAVPGTHPSDVVS 62

Query: 276 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
            G  +   V  +D     V LS      +    +  +     LL  G  +   ++ +++ 
Sbjct: 63  VGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQQ-----LLESGEPIEVEIRDVVKG 117

Query: 336 GVM--LSFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
           G++  +    +   + VD   ++N         +  + +K+ A+++ VDP    + L+  
Sbjct: 118 GLVADVGVRAFIPASLVDRHFVENL--------EQFKGQKLRAKVVEVDPHKNKLILSRR 169

Query: 393 PYL-----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
             L        R     +K GD+ + +     D   G  +D+          V IS+++ 
Sbjct: 170 AVLEEESEARARKLFEELKPGDVIEGTVQRLTD--FGAFVDVGGAD----GLVHISELSF 223

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
             V    +  +EG  V+VR+L      G  +  +KA+  E       +  PG VV+G V 
Sbjct: 224 SHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFHPGDVVQGVVR 283

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 565
            V  FGA V+   G++ L  +  +S   + KP    + G E+  RVL V  + KRI+++ 
Sbjct: 284 RVVDFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSM 343

Query: 566 KKT 568
           + +
Sbjct: 344 RDS 346


>gi|298346799|ref|YP_003719486.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
 gi|304389496|ref|ZP_07371459.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
 gi|298236860|gb|ADI67992.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
 gi|304327306|gb|EFL94541.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
          Length = 489

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 187/394 (47%), Gaps = 47/394 (11%)

Query: 1145 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            + +++IGS + L +E D +I     G  V+G V KVD +  LL I    K +  IL    
Sbjct: 13   VAINDIGSTEDLIKEIDKTIKYFNDGDLVSGTVVKVDRDEVLLDIG--YKTEGVILSREL 70

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
                  +      +G  +   VL   KE K  RL+L   +        DI     +    
Sbjct: 71   SIKHDVDPDAEVKVGDEIEALVL--QKEDKEGRLLLSKKRAQYERAWGDI-----EKVKQ 123

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318
            E  +V G + +++ G  GL++ IG   +      E++ +    P  G    + ++ K++E
Sbjct: 124  EDGVVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLQPYIG----RQLETKIIE 177

Query: 1319 ISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1377
            + +      +V LS R+ L+   S   ++ LST              L    + +G V +
Sbjct: 178  LDKNRN---NVVLSRRAFLEQTQSEVRTTFLST--------------LQKGQVRKGVVSS 220

Query: 1378 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437
            + + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK
Sbjct: 221  IVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLK 279

Query: 1438 TSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496
             +      +      +  H +G IV G++ ++  +G+F+ +E+  + GL HVSEL+  HV
Sbjct: 280  AT-----QEDPWQTFARTHKIGQIVPGKVTKLVPFGVFVRVED-GIEGLVHVSELATRHV 333

Query: 1497 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  E + + G+++ VK++ +D E+RRISL +K +
Sbjct: 334  EVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 367



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   V
Sbjct: 206 STLQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEV 264

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G
Sbjct: 265 LDVDFDRERVSLSLKATQEDPWQTFARTHKIGQ---IVPGKVTKLVPFGVFVRVEDGIEG 321

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL       P  +  +G  +  +++      RRI+LS 
Sbjct: 322 LVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSL 364



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 145/364 (39%), Gaps = 50/364 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + K+++    +      +G     EL +    +P +   VG  ++  ++      
Sbjct: 40  LVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKEDKE 99

Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P    
Sbjct: 100 GRLLLSKKRAQYERAWGDIEKVKQEDGVVTGTVIEVVKGGLIIDIGLRGF----LP---- 151

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ +   S +   
Sbjct: 152 ASLVEMRRVRDLQPYIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQKG 211

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 212 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFD 270

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +       +F + H                           IG ++ GKV
Sbjct: 271 RERVSLSLK-ATQEDPWQTFARTHK--------------------------IGQIVPGKV 303

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVD 935
            +   FGV V  E+   + G +   +LA   VE        G  I   ++D+    R + 
Sbjct: 304 TKLVPFGVFVRVEDG--IEGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRIS 361

Query: 936 LSLK 939
           LSLK
Sbjct: 362 LSLK 365



 Score = 43.9 bits (102), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + +     +S    V P  + KVG E+   VL  + 
Sbjct: 38  GDLVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLLLSKKRAQYERAWGDIEKVKQE-DGVVT-GTVIEVVKGGLIIDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQ 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    +V G V  ++  G FVR    +
Sbjct: 264 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHKIGQIVPGKVTKLVPFGVFVRVEDGI 319

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   +G  +   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 367



 Score = 41.2 bits (95), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 127/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + KV  E  ++T  +   +K  L I+D     + P+ L E +R    + +IG+ 
Sbjct: 112  ERAWGDIEKVKQEDGVVTGTVIEVVKGGL-IIDIGLRGFLPASLVEMRRVRDLQPYIGRQ 170

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R F   +     ++    + T + +G +  G +S I++   
Sbjct: 171  LETKIIELDKNRNNVVLSRRAF---LEQTQSEVRTTFLST-LQKGQVRKGVVSSIVNF-- 224

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P      GQ V  +VL++         V LSL++
Sbjct: 225  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDRE---RVSLSLKA 280

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    IV G V  +   G F+ +   ++  V
Sbjct: 281  TQE---------------DPWQTFARTHKI--GQIVPGKVTKLVPFGVFVRVEDGIEGLV 323

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L+  +VE PE+   IG  +  +V+ ++   +R+ ++LK ++
Sbjct: 324  HVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQAN 368


>gi|269218432|ref|ZP_06162286.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211543|gb|EEZ77883.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 486

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 184/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS+  L    D +I     G  + G V KVD++  LL +       + ++   +
Sbjct: 12   VAINDIGSEEDLIAAVDATIKYFNDGDIIEGTVVKVDHDEVLLDVGYKTEGVIPSKELSI 71

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                 P E+ E      +G  V   VL   KE K  RL+L   +         I      
Sbjct: 72   KHDINPDEVVE------VGDQVEALVL--QKEDKEGRLLLSKKRAQYERAWSQIEE---- 119

Query: 1255 TFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
              + E D +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++
Sbjct: 120  --VKEADGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGRE----IE 171

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
             K++E+ +      +V LS RS L+   S    +  T+             L    +  G
Sbjct: 172  AKIIELDKNRN---NVVLSRRSWLEETQSQARGEFLTN-------------LKKGQVRDG 215

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             + ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 216  VISSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEVLDVDMDRERVS 274

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      +      +  H +G IV G++ ++  +G F+ +E+  + GL H+SEL+
Sbjct: 275  LSLKAT-----QEDPWQTFARTHGIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHISELA 328

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            + HVD  E + + GE V VK++ +D E+RRISL +K +
Sbjct: 329  QRHVDLPEQVVKVGEDVFVKVIDIDLERRRISLSLKQA 366



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K G V  G + ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   V
Sbjct: 205 TNLKKGQVRDGVISSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEV 263

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G
Sbjct: 264 LDVDMDRERVSLSLKATQEDPWQTFARTHGIGQ---IVPGKVTKLVPFGAFVRVEDGIEG 320

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 321 LVHISELAQRHVDLPEQVVKVGEDVFVKVIDIDLERRRISLSL 363



 Score = 47.0 bits (110), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 50/368 (13%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            D  I  G + K++     +      +G  P  EL +     P  +  VG  V+  ++  
Sbjct: 35  NDGDIIEGTVVKVDHDEVLLDVGYKTEGVIPSKELSIKHDINPDEVVEVGDQVEALVLQK 94

Query: 644 IPASRRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 698
                R+ LS     +    +++ E  + +   +V+G V  V    +++ +  +G+    
Sbjct: 95  EDKEGRLLLSKKRAQYERAWSQIEE--VKEADGVVTGTVIEVVKGGLILDIGLRGF---- 148

Query: 699 IPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-A 756
           +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  Q   +  
Sbjct: 149 LP----ASLVEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRSWLEETQSQARGEFL 204

Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
           +++    V  G + +I+  G FV  LG + G    S+         S+   VGQ V   +
Sbjct: 205 TNLKKGQVRDGVISSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEV 263

Query: 817 LDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGS 876
           LDV+ +  R++LSLK +       +F + H                           IG 
Sbjct: 264 LDVDMDRERVSLSLK-ATQEDPWQTFARTHG--------------------------IGQ 296

Query: 877 VIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAE 931
           ++ GKV +   FG  V  E+  +    I+     H  L    V+ G  +   ++D+    
Sbjct: 297 IVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVKVGEDVFVKVIDIDLER 356

Query: 932 RLVDLSLK 939
           R + LSLK
Sbjct: 357 RRISLSLK 364



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 115/264 (43%), Gaps = 34/264 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IG+ +   ++ ++K +  + L  R + +    +
Sbjct: 139  LILDIGLRGFLPASLVEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRSWLE----E 194

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T   +     T + +G +  G IS I++   G  V +G  + G VH +EL    +  P  
Sbjct: 195  TQSQARGEFLTNLKKGQVRDGVISSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 251

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL++       T      T   T G        
Sbjct: 252  VVEVGQKVTVEVLDVDMDRE---RVSLSLKA-------TQEDPWQTFARTHG-------- 293

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
                 IV G V  +   G F+ +   ++  V +S L+  +V+ PE+   +G+ V  +V+ 
Sbjct: 294  --IGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVKVGEDVFVKVID 351

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSE 1448
            ++   +R+ ++LK ++      SE
Sbjct: 352  IDLERRRISLSLKQANEGVDPHSE 375



 Score = 46.2 bits (108), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 155/349 (44%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +++G V+ VD    ++      + + P   +S    + P +  +VG ++   VL  + 
Sbjct: 37  GDIIEGTVVKVDHDEVLLDVGYKTEGVIPSKELSIKHDINPDEVVEVGDQVEALVLQKED 96

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +   + +    EA D ++T G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLLLSKKRAQYERAWSQIEEVKEA-DGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      +K
Sbjct: 153 LVEMRRVRDLQP----YIGREIEAKIIELDKNRNNVVLSRRSWLEETQSQARGEFLTNLK 208

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GV+  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 209 KGQVRDGVISSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVTVE 262

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    +V G V  ++  G FVR    +
Sbjct: 263 VLDVDMDRERVSLSLKATQEDPWQTF----ARTHGIGQIVPGKVTKLVPFGAFVRVEDGI 318

Query: 786 TGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+    +  DL  +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 319 EGLVHISELAQ-RHVDLPEQVVKVGEDVFVKVIDIDLERRRISLSLKQA 366


>gi|196231335|ref|ZP_03130194.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428]
 gi|196224671|gb|EDY19182.1| ribosomal protein S1 [Chthoniobacter flavus Ellin428]
          Length = 566

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 181/378 (47%), Gaps = 48/378 (12%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAV 1216
            + +G  V G V  + +  A + +   +   L I D  +     PSEL        +G+ +
Sbjct: 186  IKVGSTVKGVVKNLTDFGAFIDLD-GMDGLLHITDMTWGRLGHPSEL------VKVGQEL 238

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
               VL INKEK+ + L L+  Q    ++T        +     G  V G+I+ ++    G
Sbjct: 239  DVIVLDINKEKERVSLGLKQTQKNPWEET--------ENRFPVGSKVKGKITNLVPY--G 288

Query: 1277 LVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
              V+I   + G +H +EL     ++ P      GQ V+  VL +++  +    + L +R 
Sbjct: 289  AFVEIEEGVEGLIHVSELSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQ---KISLGVRQ 345

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
                        L  +   P   +E    +     V+G V+N+T+ G F+ L   +D  +
Sbjct: 346  ------------LEPN---PWDEIEHRYQIGRQ--VKGTVRNLTAYGAFVELEEGIDGMI 388

Query: 1396 LLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
             +S++S    V  P +    G  +   V+ ++  ++R+ + +K  +     + E    + 
Sbjct: 389  HVSDMSWTKKVNHPSEVLKKGDEIEAVVIDIDKQNQRISLGIKQLEGDPWKEIE----NK 444

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
              +GD+V G++ ++ ++G FI++E  ++ GL H+S++SED VD I+   + G++V+ +++
Sbjct: 445  YKIGDLVKGKVSKITTFGAFISLEG-DIDGLIHISQISEDRVDKIKDHLKVGQEVEARVI 503

Query: 1515 KVDKEKRRISLGMKSSYF 1532
            KVDK +RRI L +K++ +
Sbjct: 504  KVDKTERRIGLSLKAANY 521



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 151/364 (41%), Gaps = 44/364 (12%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G  VKG V  +  FGA +   G +  L  +  M+   +  P +  KVG EL   VL 
Sbjct: 186 IKVGSTVKGVVKNLTDFGAFIDLDG-MDGLLHITDMTWGRLGHPSELVKVGQELDVIVLD 244

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT----HGWITKIEKHGCFVRFYNGV 609
           +  + +R+++  K+T         + + E  +R        G IT +  +G FV    GV
Sbjct: 245 INKEKERVSLGLKQTQ-------KNPWEETENRFPVGSKVKGKITNLVPYGAFVEIEEGV 297

Query: 610 QGFAPRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDL 666
           +G    SEL        PS +  VGQ V+  ++      ++I+L    ++P    E +  
Sbjct: 298 EGLIHVSELSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQKISLGVRQLEPNPWDEIEHR 357

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPG 721
            ++G  V G V  +T     V +      +G     H++D      + H +    V+K G
Sbjct: 358 YQIGRQVKGTVRNLTAYGAFVEL-----EEGIDGMIHVSDMSWTKKVNHPS---EVLKKG 409

Query: 722 YEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-----SVVHGYVCNIIET 775
            E + +++ +D ++  + L  K        QL  D      N      +V G V  I   
Sbjct: 410 DEIEAVVIDIDKQNQRISLGIK--------QLEGDPWKEIENKYKIGDLVKGKVSKITTF 461

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835
           G F+   G + G    S+  + +   +     VGQ V + ++ V+    RI LSLK +  
Sbjct: 462 GAFISLEGDIDGLIHISQISEDRVDKIKDHLKVGQEVEARVIKVDKTERRIGLSLKAANY 521

Query: 836 SSTD 839
           S  D
Sbjct: 522 SEED 525



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 111/475 (23%), Positives = 190/475 (40%), Gaps = 77/475 (16%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           K G +VKG++I V     +V    G K+   +  +SEF+        ++G E+   +L +
Sbjct: 20  KEGQIVKGRIIEVRPREVLVDI--GYKSEGAV-SLSEFD---DADDIQIGDEVEVLILRL 73

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEAT-----DRLITHGWITKIEKHGCFVRFYNGVQG 611
           +++  +V     L K K A   ++ +       D LI  G +  + K G  V    GV+ 
Sbjct: 74  ENEEGSVI----LSKEKAAYRQNWEKIVKVFQGDGLI-KGKVKAVVKGGLTVNI--GVEA 126

Query: 612 FAPRSELGLDPGCEPSSMYH-VGQVVKCRIMS------SIPASRRINLSFMMKPTRVSED 664
           F P S++ + P   P  +   VG     +I+       ++  SRR  +       R    
Sbjct: 127 FLPGSQIDIVP---PKDLQQFVGNTYDFKIVKINDDRKNVVLSRRELIEAERAEKRQRFM 183

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
           D +K+GS V GVV  +T      ++   G       T+     L H +    ++K G E 
Sbjct: 184 DTIKVGSTVKGVVKNLTDFG--AFIDLDGMDGLLHITDMTWGRLGHPS---ELVKVGQEL 238

Query: 725 DQLLVLD--NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
           D ++VLD   E   + L  K +  N  ++     +     S V G + N++  G FV   
Sbjct: 239 D-VIVLDINKEKERVSLGLKQTQKNPWEET---ENRFPVGSKVKGKITNLVPYGAFVEIE 294

Query: 783 GRLTGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
             + G    S+    +R    S    VGQ V + +L VN E  +I+L ++Q   +  D  
Sbjct: 295 EGVEGLIHVSELSWTKRITRPSDVLTVGQEVEAVVLGVNKEEQKISLGVRQLEPNPWDEI 354

Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
              EH                         + IG  ++G V     +G  V  EE  D  
Sbjct: 355 ---EHR------------------------YQIGRQVKGTVRNLTAYGAFVELEEGID-- 385

Query: 902 GFITHHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
           G I    ++           ++ G  I+A ++D+ K  + + L +K +  D ++E
Sbjct: 386 GMIHVSDMSWTKKVNHPSEVLKKGDEIEAVVIDIDKQNQRISLGIKQLEGDPWKE 440



 Score = 48.1 bits (113), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
            +  + VG  V G +K +  +G FI ++  +  GL H+++++   + +   + + G+++ V
Sbjct: 183  MDTIKVGSTVKGVVKNLTDFGAFIDLDGMD--GLLHITDMTWGRLGHPSELVKVGQELDV 240

Query: 1512 KILKVDKEKRRISLGMKSS 1530
             +L ++KEK R+SLG+K +
Sbjct: 241  IVLDINKEKERVSLGLKQT 259



 Score = 43.9 bits (102), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 93/429 (21%), Positives = 180/429 (41%), Gaps = 55/429 (12%)

Query: 939  KTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIG 998
            K V + R RE     +A+K++R  +  K   V  TV  +V+ + +    + L   +   G
Sbjct: 161  KNVVLSR-RELIEAERAEKRQRFMDTIK---VGSTVKGVVKNLTDFGAFIDLDGMD---G 213

Query: 999  YASVSDYNTQKF--PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAK 1056
               ++D    +   P +    GQ +   V+ L  +    R+ L LK     +T  +   +
Sbjct: 214  LLHITDMTWGRLGHPSELVKVGQEL--DVIVLDINKEKERVSLGLK-----QTQKNPWEE 266

Query: 1057 KKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQT 1116
             ++ + VGS V+ +IT + P    ++   G  G IH++E++  K   +        +GQ 
Sbjct: 267  TENRFPVGSKVKGKITNLVPYGAFVEIEEGVEGLIHVSELSWTKR--ITRPSDVLTVGQE 324

Query: 1117 VTARIIAKSNKPDMKKSF-LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVD 1175
            V A ++   NK + K S  + +L   P      EI       E    IG++V G V  + 
Sbjct: 325  VEA-VVLGVNKEEQKISLGVRQLEPNPW----DEI-------EHRYQIGRQVKGTVRNLT 372

Query: 1176 NEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230
               A + +   +   + + D ++      PSE+         G  +   V+ I+K+ + +
Sbjct: 373  AYGAFVELEEGIDGMIHVSDMSWTKKVNHPSEV------LKKGDEIEAVVIDIDKQNQRI 426

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVH 1290
             L ++  +    D   +I N         GD+V G++SKI +   G  + +   + G +H
Sbjct: 427  SLGIKQLE---GDPWKEIENK-----YKIGDLVKGKVSKITT--FGAFISLEGDIDGLIH 476

Query: 1291 FTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST 1350
             +++    V         GQ V+ +V+++ +T R    + LSL+++            + 
Sbjct: 477  ISQISEDRVDKIKDHLKVGQEVEARVIKVDKTER---RIGLSLKAANYSEEDIKREAAAF 533

Query: 1351 DVDTPGKHL 1359
            D   PG+ +
Sbjct: 534  DALKPGEDM 542


>gi|375096179|ref|ZP_09742444.1| ribosomal protein S1 [Saccharomonospora marina XMU15]
 gi|374656912|gb|EHR51745.1| ribosomal protein S1 [Saccharomonospora marina XMU15]
          Length = 497

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 180/381 (47%), Gaps = 49/381 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G AV   
Sbjct: 43   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VAVGDAVEAL 96

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 97   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKDKDEPVSGTVIEVVKG--GLIL 147

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 148  DIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRRAYLEQ 200

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L+   + +G V ++ + G F+ L   +D  V +S 
Sbjct: 201  TQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 246

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +G
Sbjct: 247  LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIG 301

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G +V VK++ +D 
Sbjct: 302  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDL 360

Query: 1519 EKRRISLGMKSSY--FKNDAD 1537
            E+RRISL +K +   F +D+D
Sbjct: 361  ERRRISLSLKQANEGFTSDSD 381



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 146/362 (40%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 45  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKEDKE 104

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L      VSG V  V    +++ +  +G+    +P    
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKDKDEPVSGTVIEVVKGGLILDIGLRGF----LP---- 156

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 157 ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKG 216

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 217 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 275

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 276 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 308

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G+ +   ++D+    R + LS
Sbjct: 309 TKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLS 368

Query: 938 LK 939
           LK
Sbjct: 369 LK 370



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKED 102

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKDKDEPV--SGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 842
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    ++D+ F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQANEGFTSDSDF 382



 Score = 46.2 bits (108), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 117/266 (43%), Gaps = 34/266 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +     ++
Sbjct: 145  LILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY----LEQ 200

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 201  TQSEVRSEFLNALAKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 257

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++ +                P +   +   
Sbjct: 258  VVEVGQEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRQFARTHA 299

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +G  V  +V+ 
Sbjct: 300  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVID 357

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEIN 1450
            ++   +R+ ++LK ++    S S+ +
Sbjct: 358  IDLERRRISLSLKQANEGFTSDSDFD 383


>gi|296140136|ref|YP_003647379.1| RNA binding S1 domain-containing protein [Tsukamurella paurometabola
            DSM 20162]
 gi|296028270|gb|ADG79040.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM 20162]
          Length = 499

 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 177/380 (46%), Gaps = 47/380 (12%)

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFH 1211
            F + D+  G  V G + KVD +  LL I       + ++   +    +PSE+       +
Sbjct: 33   FNDGDIVEGTIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEV------VN 86

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +G AV   VL+  KE K  RL+L   +        + +   ++    + + V G + +++
Sbjct: 87   VGDAVEALVLT--KEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEAVKGTVIEVV 139

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
             G  GL++ IG   +      E++ +    P  G +    ++ K++E+ +      +V L
Sbjct: 140  KG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE----IEAKIIELDKNRN---NVVL 190

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
            S R+ L+   S   S+              +  L    + +G V ++ + G F+ L   +
Sbjct: 191  SRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GV 236

Query: 1392 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1451
            D  V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      Q     
Sbjct: 237  DGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQ----- 291

Query: 1452 LSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
             +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+   
Sbjct: 292  FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVSVGDDAM 350

Query: 1511 VKILKVDKEKRRISLGMKSS 1530
            VK++ +D E+RRISL +K +
Sbjct: 351  VKVIDIDLERRRISLSLKQA 370



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 149/376 (39%), Gaps = 46/376 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +PS + +VG  V+  +++     
Sbjct: 43  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDAVEALVLTKEDKE 102

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 154

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-IHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  H +   
Sbjct: 155 ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKG 214

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 215 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 273

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 274 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 306

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V  G      ++D+    R + LS
Sbjct: 307 TKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLERRRISLS 366

Query: 938 LKTVFIDRFREANSNR 953
           LK    D   E + ++
Sbjct: 367 LKQANEDYTEEFDPSK 382



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 163/405 (40%), Gaps = 48/405 (11%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F   D+  G +V+G ++ VD    ++      + + P   +S    V P +   VG  + 
Sbjct: 33  FNDGDIVEGTIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDAVE 92

Query: 551 FRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL  + K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G
Sbjct: 93  ALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--G 148

Query: 609 VQGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTR 660
           ++GF P S  E+      +P    ++G+ ++ +I+      +++  SRR  L       R
Sbjct: 149 LRGFLPASLVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVR 204

Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 719
                 ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+ 
Sbjct: 205 SEFLHQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVT 258

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGC 777
            G E   ++L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G 
Sbjct: 259 VGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGA 314

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           FVR    + G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    
Sbjct: 315 FVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLERRRISLSLKQANEDY 374

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           T      E F    K  M  S   NG  +          +W+EGF
Sbjct: 375 T------EEF-DPSKYGMADSYDENGEYIFPEGFDPETNEWLEGF 412



 Score = 40.8 bits (94), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 112/259 (43%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +     
Sbjct: 143  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----- 197

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                 ++    F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 198  --QTQSEVRSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 252

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 253  PSEVVTVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRQFAR 294

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +
Sbjct: 295  THAI--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVK 352

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK ++
Sbjct: 353  VIDIDLERRRISLSLKQAN 371


>gi|185535577|gb|ACC77867.1| 30S ribosomal protein S1 [Staphylococcus xylosus]
          Length = 393

 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 134/258 (51%), Gaps = 30/258 (11%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGLVV +G    G V  + +    + D  SG+ EGQ +K KV E+         V LS R
Sbjct: 121  GGLVVDVGQR--GFVPASLISTDFIED-FSGF-EGQILKLKVEELDPA---NNRVILS-R 172

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
             +++ + +    D            E +E L+   +++G V  +T+ G F+ +   +D  
Sbjct: 173  KAVEALENAEKKD------------ELLESLNEGDVIEGKVARLTNFGAFVDIG-GVDGL 219

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS--DSRTASQSEINNL 1452
            V +S LS  +V+SPE    IG  V  ++ SV+  S+R+ +++K +      A + EIN  
Sbjct: 220  VHVSELSHEHVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIKDTLPSPFEAIKGEINE- 278

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
                 G+++ G + R+ ++G F+ I+   + GL H+SE+S  H+     + + GEKV VK
Sbjct: 279  -----GEVIEGTVVRLTNFGAFVEIQ-PGVQGLVHISEISHSHIGTPGEVLQPGEKVSVK 332

Query: 1513 ILKVDKEKRRISLGMKSS 1530
            IL VD E  RISL +K++
Sbjct: 333  ILSVDPENERISLSIKAT 350



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 93/170 (54%), Gaps = 10/170 (5%)

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP--IGKLVAG 1420
            E L  N  ++  V  V   G  + + ++    V  S +S  ++E    +F    G+++  
Sbjct: 103  EQLDNNQTIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSGFEGQILKL 156

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
            +V  ++P + RV ++ K  ++   ++ +   L +L+ GD++ G++ R+ ++G F+ I   
Sbjct: 157  KVEELDPANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGV 216

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  GL HVSELS +HV + E +   G+ VKVKI  VDK+  RISL +K +
Sbjct: 217  D--GLVHVSELSHEHVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIKDT 264



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 108/248 (43%), Gaps = 18/248 (7%)

Query: 413 QSKVVRVDRGLGLLLDIPS---TPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR-IL 468
           ++KV  V +G GL++D+      P S  +   I D +  E + L+ K +E      R IL
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSGFEGQILKLKVEELDPANNRVIL 170

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
             + +E L     K    E L         G V++GKV  + +FGA V   GGV  L  +
Sbjct: 171 SRKAVEALENAEKKDELLESL-------NEGDVIEGKVARLTNFGAFVDI-GGVDGLVHV 222

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDR 586
             +S   +  P     +G  +  ++  V   S+RI+++ K TL     AI     E    
Sbjct: 223 SELSHEHVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIKDTLPSPFEAIKGEINEGE-- 280

Query: 587 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
            +  G + ++   G FV    GVQG    SE+       P  +   G+ V  +I+S  P 
Sbjct: 281 -VIEGTVVRLTNFGAFVEIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVKILSVDPE 339

Query: 647 SRRINLSF 654
           + RI+LS 
Sbjct: 340 NERISLSI 347



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 146/355 (41%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +++K G  V G+V  ++    IV   GG    + P+  +S   I  P    KVG E+   
Sbjct: 11  NEIKEGDKVTGEVQEIEEKQVIVHVNGGKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  V+      T    L K +L    SY    ++L         +T++ K G  V    G
Sbjct: 71  VTKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 663
            +GF P S +  D   E  S +  GQ++K ++    PA+ R+ LS   K     E     
Sbjct: 129 QRGFVPASLISTD-FIEDFSGFE-GQILKLKVEELDPANNRVILS--RKAVEALENAEKK 184

Query: 664 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D+L++    G ++ G V  +T     V +   G   G +    L+   EH    + V+  
Sbjct: 185 DELLESLNEGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVKSPEDVVAI 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  +D +S  + LS K +L +  + +  +   I+   V+ G V  +   G FV
Sbjct: 240 GDSVKVKIKSVDKDSERISLSIKDTLPSPFEAIKGE---INEGEVIEGTVVRLTNFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+          +    G+ V   IL V+ E  RI+LS+K + 
Sbjct: 297 EIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVKILSVDPENERISLSIKATL 351



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 163/394 (41%), Gaps = 81/394 (20%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 284
           ++EG  +T  V+ IE+   I+H     F G +P + L+    +N    VK G  +   V 
Sbjct: 13  IKEGDKVTGEVQEIEEKQVIVHVNGGKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAYVT 72

Query: 285 -----------------RSIDRTRKVVYLSSDPD---TVSKCVTKDLKG-ISIDL----L 319
                            R ++  +   +L    D   T+   VT+ +KG + +D+     
Sbjct: 73  KVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDVGQRGF 132

Query: 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
           VP  ++ST             F+  F+G          F     K    +    N R++ 
Sbjct: 133 VPASLIST------------DFIEDFSG----------FEGQILKLKVEELDPANNRVIL 170

Query: 380 VDPTSRAVGLTLNPY----LLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
              + +AV    N      LL +      +  GD+  + KV R+    G  +DI      
Sbjct: 171 ---SRKAVEALENAEKKDELLES------LNEGDVI-EGKVARL-TNFGAFVDIGGVD-- 217

Query: 436 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLVFT 492
               V +S+++ E V+  E     G  V+V+I    +  E ++  I     S FE +   
Sbjct: 218 --GLVHVSELSHEHVKSPEDVVAIGDSVKVKIKSVDKDSERISLSIKDTLPSPFEAI--- 272

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
             ++  G V++G V+ + +FGA V+   GV+ L  +  +S   I  PG+  + G ++  +
Sbjct: 273 KGEINEGEVIEGTVVRLTNFGAFVEIQPGVQGLVHISEISHSHIGTPGEVLQPGEKVSVK 332

Query: 553 VLGV--KSKRITVTHKKTLVKSKLAILSSYAEAT 584
           +L V  +++RI+++ K TL      I+ S +E T
Sbjct: 333 ILSVDPENERISLSIKATLPDEN--IIESDSETT 364


>gi|294786795|ref|ZP_06752049.1| ribosomal protein S1 [Parascardovia denticolens F0305]
 gi|315226424|ref|ZP_07868212.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
            12538]
 gi|420237201|ref|ZP_14741672.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
 gi|294485628|gb|EFG33262.1| ribosomal protein S1 [Parascardovia denticolens F0305]
 gi|315120556|gb|EFT83688.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
            12538]
 gi|391879472|gb|EIT87978.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
          Length = 493

 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 172/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V K+D++  LL I       + ++   +     P ++ E      +G  +   
Sbjct: 36   GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDVTPEDVVE------VGDTI--E 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1278
             L + KE K  RL+L   +        D+        I E D +V G + + + G  GL+
Sbjct: 88   ALVVTKEDKEGRLILSKKRAQYERAWGDVEK------IKEADGVVEGTVIEAVKG--GLI 139

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V IG   +      E++ +    P  G    Q ++ K+LE+ +      +V LS R  L+
Sbjct: 140  VDIGLRGFLPASLVEMRRVRDLAPYIG----QKIQAKILELDKNRN---NVVLSRREYLE 192

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
               S                   +  L    + +G + ++ + G F+ L   +D  + +S
Sbjct: 193  ETQSEVRETF-------------LSQLKKGQVREGTISSIVNFGAFVDLG-GVDGLIHVS 238

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV- 1457
             LS  +++ P +   +G  V   VL V+   +R+ ++LK +      +      +  HV 
Sbjct: 239  ELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT-----QEDPWQRFARTHVP 293

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G IV G++ ++  +G+F+++++  + GL H+SEL+  HV+N ET+ + GE + VK++ VD
Sbjct: 294  GQIVRGKVTKIVQFGVFVSVDD-GIEGLIHISELANRHVENPETVVKPGETIFVKVIDVD 352

Query: 1518 KEKRRISLGMKSS 1530
             ++RRISL +K +
Sbjct: 353  LDRRRISLSLKQA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G V +G + ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQVREGTISSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI+++ K T          ++       I  G +TKI + G FV   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---IVRGKVTKIVQFGVFVSVDDGIEG 319

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL       P ++   G+ +  +++      RRI+LS 
Sbjct: 320 LIHISELANRHVENPETVVKPGETIFVKVIDVDLDRRRISLSL 362



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 146/374 (39%), Gaps = 44/374 (11%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +     P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDVTPEDVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 694
            ++  +++      R+ LS        +  D+ K+     GVV+     AV   +I    
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDVEKIKE-ADGVVEGTVIEAVKGGLIVDIG 143

Query: 695 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL- 752
            +G +P    A  +E   V       G +   ++L LD   +N++LS +  L  +  ++ 
Sbjct: 144 LRGFLP----ASLVEMRRVRDLAPYIGQKIQAKILELDKNRNNVVLSRREYLEETQSEVR 199

Query: 753 PSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
            +  S +    V  G + +I+  G FV  LG + G    S+         S+   VG  V
Sbjct: 200 ETFLSQLKKGQVREGTISSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 813 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
              +LDV+ +  RI+LSLK +        F + H                          
Sbjct: 259 TVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH-------------------------- 291

Query: 873 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAIL 925
           + G ++ GKV +   FGV VS ++   + G I   +LA   VE+       G  I   ++
Sbjct: 292 VPGQIVRGKVTKIVQFGVFVSVDDG--IEGLIHISELANRHVENPETVVKPGETIFVKVI 349

Query: 926 DVAKAERLVDLSLK 939
           DV    R + LSLK
Sbjct: 350 DVDLDRRRISLSLK 363



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 152/355 (42%), Gaps = 29/355 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S  + V P    +VG  +   V+  + 
Sbjct: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDVTPEDVVEVGDTIEALVVTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA    +  G + +  K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGDVEKIKEADG--VVEGTVIEAVKGGLIVDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    +K
Sbjct: 152 LVEMRRVRDLAP----YIGQKIQAKILELDKNRNNVVLSRREYLEETQSEVRETFLSQLK 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  G +  +      V +   G   G I    L+  H++H +    V+K G +   +
Sbjct: 208 KGQVREGTISSIVNFGAFVDL---GGVDGLIHVSELSWKHIDHPS---EVVKVGDKVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  Q+     +H+ P  +V G V  I++ G FV     + 
Sbjct: 262 VLDVDLDRERISLSLKATQEDPWQRFAR--THV-PGQIVRGKVTKIVQFGVFVSVDDGIE 318

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
           G    S+  +    +       G+++   ++DV+ +  RI+LSLKQ+  S   AS
Sbjct: 319 GLIHISELANRHVENPETVVKPGETIFVKVIDVDLDRRRISLSLKQANDSVDPAS 373



 Score = 48.9 bits (115), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 83/401 (20%), Positives = 170/401 (42%), Gaps = 70/401 (17%)

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTA 1119
            ++D G LV+  + +I   E+ L  G    G I   E++  K    E++    ++G T+ A
Sbjct: 32   NFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDVTPEDVV---EVGDTIEA 88

Query: 1120 RIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWA 1179
             ++ K +K                 L +S+  ++           +R  G V K+     
Sbjct: 89   LVVTKEDKE--------------GRLILSKKRAQY----------ERAWGDVEKIKEADG 124

Query: 1180 LL--TISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLL 1230
            ++  T+   +K  L I+D     + P+ L E +R      +IG+ +   +L ++K +  +
Sbjct: 125  VVEGTVIEAVKGGL-IVDIGLRGFLPASLVEMRRVRDLAPYIGQKIQAKILELDKNRNNV 183

Query: 1231 RLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYG 1287
             L  R + +       +  ++  +TF+ +   G +  G IS I++   G  V +G  + G
Sbjct: 184  VLSRREYLE-------ETQSEVRETFLSQLKKGQVREGTISSIVNF--GAFVDLG-GVDG 233

Query: 1288 RVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSD 1347
             +H +EL    +  P      G  V  +VL++         + LSL+++ +         
Sbjct: 234  LIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRE---RISLSLKATQE--------- 281

Query: 1348 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1407
                   P +   +     P  IV+G V  +   G F+ +   ++  + +S L++ +VE+
Sbjct: 282  ------DPWQRFARTH--VPGQIVRGKVTKIVQFGVFVSVDDGIEGLIHISELANRHVEN 333

Query: 1408 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
            PE     G+ +  +V+ V+   +R+ ++LK ++      SE
Sbjct: 334  PETVVKPGETIFVKVIDVDLDRRRISLSLKQANDSVDPASE 374


>gi|271964470|ref|YP_003338666.1| 30S ribosomal protein S1 [Streptosporangium roseum DSM 43021]
 gi|270507645|gb|ACZ85923.1| Ribosomal protein S1-like protein [Streptosporangium roseum DSM
            43021]
          Length = 500

 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 191/397 (48%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS+  F    D++I     G  V G V KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEDFLAAIDLTIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+++ E      +G+ V   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPADVVE------VGEHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKDEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+    T S    T ++T          L    + +G 
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLE---QTQSEVRQTFLNT----------LQKGQVRKGV 218

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 219  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSL 277

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      Q      +  H +G +V G++ ++  +G F+ +E   + GL H+SEL+E
Sbjct: 278  SLKATQEDPWQQ-----FARTHQIGQVVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAE 331

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E + + G+++ VKI+ +D E+RRISL +K +
Sbjct: 332  RHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQA 368



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 154/356 (43%), Gaps = 29/356 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P    +VG  +   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPADVVEVGEHVEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKD-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMERERVSLSLKATQEDPWQQF---ARTHQIGQVVPGRVTKLVPFGAFVRVEEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 842
           G    S+  +       +   VG  +   I+D++ E  RI+LSLKQ+  S+T A  
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQANESATGADI 377



 Score = 46.2 bits (108), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 137/299 (45%), Gaps = 44/299 (14%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+ +E  ++T  +   +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 113  ERAWGTIEKIKDEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGRE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH---EGDIVGGRISKILS 1272
            +   ++ ++K +  + L  R + +          ++  QTF++   +G +  G +S I++
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRQTFLNTLQKGQVRKGVVSSIVN 224

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
               G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LS
Sbjct: 225  F--GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERE---RVSLS 278

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
            L+++ +                P +   +   +    +V G V  +   G F+ +   ++
Sbjct: 279  LKATQE---------------DPWQQFARTHQI--GQVVPGRVTKLVPFGAFVRVEEGIE 321

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-TSDSRTASQSEIN 1450
              V +S L++ +VE PE+   +G  +  +++ ++   +R+ ++LK  ++S T +  E +
Sbjct: 322  GLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQANESATGADIEFD 380


>gi|227875377|ref|ZP_03993518.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243]
 gi|269977367|ref|ZP_06184340.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1]
 gi|306818692|ref|ZP_07452414.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239]
 gi|307700853|ref|ZP_07637878.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16]
 gi|227843931|gb|EEJ54099.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243]
 gi|269934670|gb|EEZ91231.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1]
 gi|304648378|gb|EFM45681.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239]
 gi|307613848|gb|EFN93092.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16]
          Length = 489

 Score = 93.2 bits (230), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 187/395 (47%), Gaps = 49/395 (12%)

Query: 1145 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            + +++IGS + L +E D +I     G  VTG V KVD +  LL I    K +  IL    
Sbjct: 12   VAINDIGSTEDLLKEIDKTIKYFNDGDLVTGTVVKVDRDEVLLDIG--YKTEGVILSREL 69

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
                  +      +G  +   VL   KE K  RL+L   +        D+        I 
Sbjct: 70   SIKHDVDPDEEVKVGDEIEALVL--QKEDKEGRLLLSKKRAQYERAWGDVEK------IK 121

Query: 1259 EGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVL 1317
            E D +V G + +++ G  GL++ IG   +      E++ +    P  G    + ++ K++
Sbjct: 122  EADGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG----RQLETKII 175

Query: 1318 EISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            E+ +      +V LS R+ L+   S   ++ LST              L    +  G V 
Sbjct: 176  ELDKNRN---NVVLSRRAFLEQTQSEVRTTFLST--------------LQKGQVRTGVVS 218

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++L
Sbjct: 219  SIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSLSL 277

Query: 1437 KTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1495
            K +      +      +  H +G IV G++ ++  +G+F+ +E+  + GL HVSEL+  H
Sbjct: 278  KAT-----QEDPWQTFARTHKIGQIVPGKVTKLVPFGVFVRVED-GIEGLVHVSELATRH 331

Query: 1496 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            ++  E + + G+++ VK++ +D E+RRISL +K +
Sbjct: 332  IEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 366



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 110/258 (42%), Gaps = 18/258 (6%)

Query: 416 VVRVDRGLGLLLDIP---STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 472
           V+ V +G GL+LDI      P S      + D+A    R+LE K  E    R  ++  R 
Sbjct: 131 VIEVVKG-GLILDIGLRGFLPASLVEMRRVRDLAPYIGRQLETKIIELDKNRNNVVLSRR 189

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
                   L+ +  E      S ++ G V  G V ++ +FGA V   GGV  L  +  +S
Sbjct: 190 ------AFLEQTQSEVRTTFLSTLQKGQVRTGVVSSIVNFGAFVDL-GGVDGLVHVSELS 242

Query: 533 EFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
              I  P +  +VG E+   VL V    +R++++ K T          ++       I  
Sbjct: 243 WKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQTFARTHKIGQ---IVP 299

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G +TK+   G FVR  +G++G    SEL       P  +  +G  +  +++      RRI
Sbjct: 300 GKVTKLVPFGVFVRVEDGIEGLVHVSELATRHIEVPEQVAKIGDEIFVKVIDIDLERRRI 359

Query: 651 NLSFMM--KPTRVSEDDL 666
           +LS     +   VS DD 
Sbjct: 360 SLSLKQANEGVDVSSDDF 377



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + +     +S    V P ++ KVG E+   VL  + 
Sbjct: 37  GDLVTGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDEEVKVGDEIEALVLQKED 96

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA D ++T G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLLLSKKRAQYERAWGDVEKIKEA-DGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 153 LVEMRRVRDLAP----YIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQ 208

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 209 KGQVRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGQEVTVE 262

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    +V G V  ++  G FVR    +
Sbjct: 263 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHKIGQIVPGKVTKLVPFGVFVRVEDGI 318

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   +G  +   ++D++ E  RI+LSLKQ+
Sbjct: 319 EGLVHVSELATRHIEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 366



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 146/365 (40%), Gaps = 51/365 (13%)

Query: 587 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
           L+T G + K+++    +      +G     EL +    +P     VG  ++  ++     
Sbjct: 39  LVT-GTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDEEVKVGDEIEALVLQKEDK 97

Query: 647 SRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
             R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P   
Sbjct: 98  EGRLLLSKKRAQYERAWGDVEKIKEADGVVTGTVIEVVKGGLILDIGLRGF----LP--- 150

Query: 704 LADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHP 761
            A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ +   S +  
Sbjct: 151 -ASLVEMRRVRDLAPYIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQK 209

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ 
Sbjct: 210 GQVRTGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDF 268

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
           +  R++LSLK +       +F + H                           IG ++ GK
Sbjct: 269 DRERVSLSLK-ATQEDPWQTFARTH--------------------------KIGQIVPGK 301

Query: 882 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLV 934
           V +   FGV V  E+   + G +   +LA   +E        G  I   ++D+    R +
Sbjct: 302 VTKLVPFGVFVRVEDG--IEGLVHVSELATRHIEVPEQVAKIGDEIFVKVIDIDLERRRI 359

Query: 935 DLSLK 939
            LSLK
Sbjct: 360 SLSLK 364


>gi|283780187|ref|YP_003370942.1| 30S ribosomal protein S1 [Pirellula staleyi DSM 6068]
 gi|283438640|gb|ADB17082.1| ribosomal protein S1 [Pirellula staleyi DSM 6068]
          Length = 600

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 180/381 (47%), Gaps = 59/381 (15%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKA 1215
            ++ IGQ   G V  +    A + +   +   L I D ++E    PSE+    +   +   
Sbjct: 215  ELEIGQVRKGVVKNIAEFGAFVDLG-GIDGLLHITDMSWERIGHPSEMVAIDQEIEV--- 270

Query: 1216 VTGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
                VL I++EKK + L L+     P+ D             + T    G +V G +  +
Sbjct: 271  ---MVLHIDREKKKIALGLKQKEGNPWAD-------------VDTKYPVGTVVKGSVVNV 314

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
            +S   G  V++ P + G VH +E+     V+ P    + G  +   +L + +  +     
Sbjct: 315  MSY--GAFVKLEPGIEGLVHISEMSWTRRVNHPSELVNIGDEISVVILGVDKDGQ----- 367

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNVTSKGCFIMLS 1388
            +LSL     GM  T  +  +           ++ +  P + IV+G V+N+T+ G F+ L 
Sbjct: 368  QLSL-----GMKQTQENPWT-----------RVAEKYPVDTIVEGKVRNLTNYGAFVELE 411

Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              +D  + +S++S    +  P +    G+ V  ++LSV+   +R+ + LK  D    ++ 
Sbjct: 412  EGIDGLLHVSDMSWTRKISHPSEMLEKGQPVRCKILSVDQERRRIALGLKQLDEDPWAR- 470

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
              +       G +V G + ++ ++G+F+ +E+  L GL H+SEL++  V+N E + + G+
Sbjct: 471  --DIPGKYQPGQVVSGAVTKITNFGVFVGLED-GLEGLLHISELADHKVENPEDVVKVGD 527

Query: 1508 KVKVKILKVDKEKRRISLGMK 1528
            K+ VKIL+VD ++R+I L  K
Sbjct: 528  KIDVKILRVDIDERKIGLSRK 548



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 134/280 (47%), Gaps = 30/280 (10%)

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE-GQF 1311
            M   I EG +V G +S+ + G  GL+V I     G   F     + +  P    D  G+ 
Sbjct: 125  MMDRIKEGQVVTGTVSRKIKG--GLLVDI----EGVNVFLPASQVDIRRPADIGDYIGRT 178

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            V+C+VL+I    R   ++ +S RS ++     +   L             +++L    + 
Sbjct: 179  VQCEVLKIDEARR---NIVVSRRSLIERQREEDREAL-------------LKELEIGQVR 222

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G VKN+   G F+ L   +D  + ++++S   +  P +   I + +   VL ++   K+
Sbjct: 223  KGVVKNIAEFGAFVDLG-GIDGLLHITDMSWERIGHPSEMVAIDQEIEVMVLHIDREKKK 281

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
            + + LK  +    +  +    +   VG +V G +  V SYG F+ +E   + GL H+SE+
Sbjct: 282  IALGLKQKEGNPWADVD----TKYPVGTVVKGSVVNVMSYGAFVKLE-PGIEGLVHISEM 336

Query: 1492 S-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            S    V++   +   G+++ V IL VDK+ +++SLGMK +
Sbjct: 337  SWTRRVNHPSELVNIGDEISVVILGVDKDGQQLSLGMKQT 376



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 84/399 (21%), Positives = 159/399 (39%), Gaps = 66/399 (16%)

Query: 571 KSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
           K K   L ++ E  DR+    +  G +++  K G  V    GV  F P S++ +     P
Sbjct: 113 KRKAKKLDAWKEMMDRIKEGQVVTGTVSRKIKGGLLVDI-EGVNVFLPASQVDI---RRP 168

Query: 627 SSMY-HVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL------VKLGSLVSGVVDV 679
           + +  ++G+ V+C ++    A R I +S      R  E+D       +++G +  GVV  
Sbjct: 169 ADIGDYIGRTVQCEVLKIDEARRNIVVSRRSLIERQREEDREALLKELEIGQVRKGVVKN 228

Query: 680 VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLL 738
           +       +V   G       T+   + + H + M ++ +   E + +++ +D E   + 
Sbjct: 229 IAEFGA--FVDLGGIDGLLHITDMSWERIGHPSEMVAIDQ---EIEVMVLHIDREKKKIA 283

Query: 739 LSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
           L  K    N      +D    +P  +VV G V N++  G FV+    + G    S+    
Sbjct: 284 LGLKQKEGNPW----ADVDTKYPVGTVVKGSVVNVMSYGAFVKLEPGIEGLVHISEMSWT 339

Query: 798 QRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAML 856
           +R +  S+   +G  +   IL V+ +  +++L +KQ+                       
Sbjct: 340 RRVNHPSELVNIGDEISVVILGVDKDGQQLSLGMKQT----------------------- 376

Query: 857 QSSKHNGSELKWV---EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--- 910
                   E  W    E + + +++EGKV    ++G  V  EE  D    ++        
Sbjct: 377 -------QENPWTRVAEKYPVDTIVEGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKI 429

Query: 911 ---GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
                 +E G  ++  IL V +  R + L LK +  D +
Sbjct: 430 SHPSEMLEKGQPVRCKILSVDQERRRIALGLKQLDEDPW 468



 Score = 44.7 bits (104), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 7/157 (4%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVKSK 559
           +V+GKV  + ++GA V+   G+  L  +  MS   +I  P +  + G  +  ++L V  +
Sbjct: 393 IVEGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKISHPSEMLEKGQPVRCKILSVDQE 452

Query: 560 RITVTHK-KTLVKSKLA--ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           R  +    K L +   A  I   Y       +  G +TKI   G FV   +G++G    S
Sbjct: 453 RRRIALGLKQLDEDPWARDIPGKYQPGQ---VVSGAVTKITNFGVFVGLEDGLEGLLHIS 509

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           EL       P  +  VG  +  +I+      R+I LS
Sbjct: 510 ELADHKVENPEDVVKVGDKIDVKILRVDIDERKIGLS 546



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 163/405 (40%), Gaps = 52/405 (12%)

Query: 188 HVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 247
           ++G+ V C VL++D+ ++ I   +  L  R     +   L+ ++ G V    VK+I + G
Sbjct: 174 YIGRTVQCEVLKIDEARRNIVVSRRSLIERQREEDREALLKELEIGQVRKGVVKNIAEFG 233

Query: 248 YILHFGLPSFTGFLPRNNLA--------ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSD 299
             +  G     G L   +++        E   ID +    ++ +V  IDR +K + L   
Sbjct: 234 AFVDLG--GIDGLLHITDMSWERIGHPSEMVAIDQE----IEVMVLHIDREKKKIALGLK 287

Query: 300 PDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359
               +     D K         G +V   V +++  G  +       G V I  +  T  
Sbjct: 288 QKEGNPWADVDTK------YPVGTVVKGSVVNVMSYGAFVKLEPGIEGLVHISEMSWTRR 341

Query: 360 TTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHV---KVGDI 410
             +     N   +++  IL VD   + + L +     NP+  +  + P   +   KV ++
Sbjct: 342 VNHPSELVNIGDEISVVILGVDKDGQQLSLGMKQTQENPWTRVAEKYPVDTIVEGKVRNL 401

Query: 411 YDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
            +    V ++ G+  LL +     +  +S P+ +            LEK    G  VR +
Sbjct: 402 TNYGAFVELEEGIDGLLHVSDMSWTRKISHPSEM------------LEK----GQPVRCK 445

Query: 467 ILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
           IL   +    +A G+ +              +PG VV G V  + +FG  V    G++ L
Sbjct: 446 ILSVDQERRRIALGLKQLDEDPWARDIPGKYQPGQVVSGAVTKITNFGVFVGLEDGLEGL 505

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
             +  +++ ++  P    KVG ++  ++L   +  ++I ++ K+ 
Sbjct: 506 LHISELADHKVENPEDVVKVGDKIDVKILRVDIDERKIGLSRKRV 550


>gi|296269456|ref|YP_003652088.1| RNA binding S1 domain-containing protein [Thermobispora bispora DSM
            43833]
 gi|296092243|gb|ADG88195.1| RNA binding S1 domain protein [Thermobispora bispora DSM 43833]
          Length = 480

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 188/397 (47%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS+  F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPAEV------VKVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+    T S    T ++T          L    + +G 
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLE---QTQSEVRQTFLNT----------LQKGQVRKGV 218

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 219  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSL 277

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      Q      +  H +G +V G++ ++  +G F+ +E   + GL H+SEL+E
Sbjct: 278  SLKATQEDPWQQ-----FARTHQIGQVVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAE 331

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E + + G+++ VKI+ +D E+RRISL +K +
Sbjct: 332  RHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQA 368



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 151/347 (43%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  KVG  +   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVKVGDHVEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMERERVSLSLKATQEDPWQQF---ARTHQIGQVVPGRVTKLVPFGAFVRVEEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   VG  +   I+D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQA 368



 Score = 46.6 bits (109), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 134/298 (44%), Gaps = 43/298 (14%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGRE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH---EGDIVGGRISKILS 1272
            +   ++ ++K +  + L  R + +          ++  QTF++   +G +  G +S I++
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRQTFLNTLQKGQVRKGVVSSIVN 224

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
               G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LS
Sbjct: 225  F--GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERE---RVSLS 278

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
            L+++ +                P +   +   +    +V G V  +   G F+ +   ++
Sbjct: 279  LKATQE---------------DPWQQFARTHQI--GQVVPGRVTKLVPFGAFVRVEEGIE 321

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
              V +S L++ +VE PE+   +G  +  +++ ++   +R+ ++LK ++    +  E +
Sbjct: 322  GLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQANEGVGADVEFD 379


>gi|315655345|ref|ZP_07908245.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
 gi|315656742|ref|ZP_07909629.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
            35242]
 gi|315490285|gb|EFU79910.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
 gi|315492697|gb|EFU82301.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
            35242]
          Length = 489

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 187/394 (47%), Gaps = 47/394 (11%)

Query: 1145 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            + +++IGS + L +E D +I     G  V+G V KVD +  LL I    K +  IL    
Sbjct: 13   VAINDIGSTEDLIKEIDKTIKYFNDGDLVSGTVVKVDRDEVLLDIG--YKTEGVILSREL 70

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
                  +      +G  +   VL   KE K  RL+L   +        DI     +    
Sbjct: 71   SIKHDVDPDAEVKVGDEIEALVL--QKEDKEGRLLLSKKRAQYERAWGDI-----EKVKQ 123

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318
            E  +V G + +++ G  GL++ IG   +      E++ +    P  G    + ++ K++E
Sbjct: 124  EDGVVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLQPYIG----RQLETKIIE 177

Query: 1319 ISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKN 1377
            + +      +V LS R+ L+   S   ++ LST              L    + +G V +
Sbjct: 178  LDKNRN---NVVLSRRAFLEQTQSEVRTTFLST--------------LQKGQVRKGVVSS 220

Query: 1378 VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437
            + + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK
Sbjct: 221  IVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLK 279

Query: 1438 TSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496
             +      +      +  H +G IV G++ ++  +G+F+ +E+  + GL HVSEL+  HV
Sbjct: 280  AT-----QEDPWQTFARTHKIGQIVPGKVTKLVPFGVFVRVED-GIEGLVHVSELATRHV 333

Query: 1497 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  E + + G+++ VK++ +D E+RRISL +K +
Sbjct: 334  EVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 367



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   V
Sbjct: 206 STLQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEV 264

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +R++++ K T          ++       I  G +TK+   G FVR  +G++G
Sbjct: 265 LDVDFDRERVSLSLKATQEDPWQTFARTHKIGQ---IVPGKVTKLVPFGVFVRVEDGIEG 321

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL       P  +  +G  +  +++      RRI+LS 
Sbjct: 322 LVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSL 364



 Score = 47.4 bits (111), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 143/363 (39%), Gaps = 48/363 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + K+++    +      +G     EL +    +P +   VG  ++  ++      
Sbjct: 40  LVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKEDKE 99

Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+   ++     
Sbjct: 100 GRLLLSKKRAQYERAWGDIEKVKQEDGVVTGTVIEVVKGGLIIDIGLRGFLPASLV---- 155

Query: 705 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNS 763
              +     ++  I    E  +++ LD   +N++LS +  L  +  ++ +   S +    
Sbjct: 156 --EMRRVRDLQPYIGRQLET-KIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQKGQ 212

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ + 
Sbjct: 213 VRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDR 271

Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
            R++LSLK +       +F + H                           IG ++ GKV 
Sbjct: 272 ERVSLSLK-ATQEDPWQTFARTHK--------------------------IGQIVPGKVT 304

Query: 884 ESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDL 936
           +   FGV V  E+   + G +   +LA   VE        G  I   ++D+    R + L
Sbjct: 305 KLVPFGVFVRVEDG--IEGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISL 362

Query: 937 SLK 939
           SLK
Sbjct: 363 SLK 365



 Score = 43.9 bits (102), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + +     +S    V P  + KVG E+   VL  + 
Sbjct: 38  GDLVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDAEVKVGDEIEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLLLSKKRAQYERAWGDIEKVKQE-DGVVT-GTVIEVVKGGLIIDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLSTLQ 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    +V G V  ++  G FVR    +
Sbjct: 264 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHKIGQIVPGKVTKLVPFGVFVRVEDGI 319

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   +G  +   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQA 367



 Score = 40.8 bits (94), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 126/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + KV  E  ++T  +   +K  L I+D     + P+ L E +R    + +IG+ 
Sbjct: 112  ERAWGDIEKVKQEDGVVTGTVIEVVKGGL-IIDIGLRGFLPASLVEMRRVRDLQPYIGRQ 170

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R F     ++T         + + +G +  G +S I++   
Sbjct: 171  LETKIIELDKNRNNVVLSRRAF----LEQTQSEVRTTFLSTLQKGQVRKGVVSSIVNF-- 224

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P      GQ V  +VL++         V LSL++
Sbjct: 225  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGQEVTVEVLDVDFDRE---RVSLSLKA 280

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    IV G V  +   G F+ +   ++  V
Sbjct: 281  TQE---------------DPWQTFARTHKI--GQIVPGKVTKLVPFGVFVRVEDGIEGLV 323

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L+  +VE PE+   IG  +  +V+ ++   +R+ ++LK ++
Sbjct: 324  HVSELATRHVEVPEQVAKIGDEIFVKVIDIDLERRRISLSLKQAN 368


>gi|23336678|ref|ZP_00121881.1| COG0539: Ribosomal protein S1 [Bifidobacterium longum DJO10A]
          Length = 484

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 181/392 (46%), Gaps = 55/392 (14%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + +++IG++  F +  D +I     G  V G V K+D++  LL I       + ++  
Sbjct: 9    TKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSREL 68

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ E      +G  +    L + KE K  RL+L   +        DI    
Sbjct: 69   SIKKDVDPDEVVE------VGDTI--EALVVTKEDKEGRLILSKKRAQYERAWGDIEK-- 118

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + + + G  GL+V IG   +      E++ +    P  G    Q 
Sbjct: 119  ----IKEADGVVEGTVIEAVKG--GLIVDIGLRGFLPASLVEMRRVRDLSPYIG----QK 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            +K K+LE+ +      +V LS R  L+   S                   +  L    I 
Sbjct: 169  IKAKILELDKN---RNNVVLSRRQYLEETQSEVRETF-------------LSQLKKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  + +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  EGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            + ++LK +      +      +  HV G IV G++ ++  +G+FI++E+  + GL H+SE
Sbjct: 272  ISLSLKAT-----QEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            L+  HV+N ET+ + GE V VK++ VD ++RR
Sbjct: 326  LANRHVENPETVVKPGETVFVKVIDVDLDRRR 357



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 6/119 (5%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN--LSNLHVGDIVIGQIKRVESY 1471
            IG+ +  ++L ++    R  V L        +QSE+    LS L  G I  G +  + ++
Sbjct: 165  IGQKIKAKILELD--KNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNF 222

Query: 1472 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            G F+ +   +  GL HVSELS  H+D+   + + G+KV V++L VD ++ RISL +K++
Sbjct: 223  GAFVDLGGVD--GLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT 279



 Score = 50.1 bits (118), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 135/344 (39%), Gaps = 37/344 (10%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  +  G + KI+     +      +G  P  EL +    +P  +  VG 
Sbjct: 25  AVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGD 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 694
            ++  +++      R+ LS        +  D+ K+     GVV+     AV   +I    
Sbjct: 85  TIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKE-ADGVVEGTVIEAVKGGLIVDIG 143

Query: 695 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLP 753
            +G +P    A  +E   V       G +   ++L LD   +N++LS +  L  +  ++ 
Sbjct: 144 LRGFLP----ASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVR 199

Query: 754 SD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSV 812
               S +    +  G V +I+  G FV  LG + G    S+         S+   VG  V
Sbjct: 200 ETFLSQLKKGQIREGVVSSIVNFGAFVD-LGGVDGLIHVSELSWKHIDHPSEVVKVGDKV 258

Query: 813 RSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
              +LDV+ +  RI+LSLK +        F + H                          
Sbjct: 259 TVEVLDVDLDRERISLSLK-ATQEDPWQRFARTH-------------------------- 291

Query: 873 IIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES 916
           + G +++GKV +   FGV +S E+   + G +   +LA   VE+
Sbjct: 292 VPGQIVKGKVTKIVQFGVFISVEDG--IEGLVHISELANRHVEN 333



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G + +G V ++ +FGA V   GGV  L  +  +S   I  P +  KVG ++   V
Sbjct: 204 SQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI+++ K T          ++       I  G +TKI + G F+   +G++G
Sbjct: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQ---IVKGKVTKIVQFGVFISVEDGIEG 319

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
               SEL       P ++   G+ V  +++      RR
Sbjct: 320 LVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRR 357


>gi|284031037|ref|YP_003380968.1| RNA binding S1 domain-containing protein [Kribbella flavida DSM
            17836]
 gi|283810330|gb|ADB32169.1| RNA binding S1 domain protein [Kribbella flavida DSM 17836]
          Length = 492

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 185/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS+  F    D++I     G  V G + KVD +  LL I       + ++   +
Sbjct: 19   VAVNDIGSEEDFLAAIDLTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 78

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+       ++G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 79   KHDVDPNEV------VNVGDHVEALVL--QKEDKEGRLILSKKR-----AQYEKAWGTIE 125

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++ 
Sbjct: 126  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEA 179

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S    +  T              L    I +G 
Sbjct: 180  KIIELDKNRN---NVVLSRRAWLEQTQSEVRMNFLTQ-------------LQKGQIRKGV 223

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 224  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPTEVVEVGQEVTVEVLDVDMDRERVSL 282

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E
Sbjct: 283  SLKATQEDPWQQ-----FARTHQMGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAE 336

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E + +  + V VKI+ +D E+RRISL +K +
Sbjct: 337  RHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQA 373



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 44  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDHVEALVLQKED 103

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 104 KEGRLILSKKRAQYEKAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 159

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R++    ++
Sbjct: 160 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRMNFLTQLQ 215

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H T    V++ G E   +
Sbjct: 216 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPT---EVVEVGQEVTVE 269

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       +V G V  ++  G FVR    + 
Sbjct: 270 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQMGQIVPGKVTKLVPFGAFVRVEEGIE 326

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   V   I+D++ E  RI+LSLKQ+
Sbjct: 327 GLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQA 373



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +     ++
Sbjct: 146  LILDIGLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAW----LEQ 201

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T      N  T + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 202  TQSEVRMNFLTQLQKGQIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPTE 258

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++ +                P +   +   
Sbjct: 259  VVEVGQEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWQQFARTHQ 300

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +++ 
Sbjct: 301  M--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNDDVMVKIID 358

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 359  IDLERRRISLSLKQAN 374


>gi|374709444|ref|ZP_09713878.1| 30S ribosomal protein S1 [Sporolactobacillus inulinus CASD]
          Length = 384

 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 183/379 (48%), Gaps = 59/379 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +++G  V G V KV+ + AL+ +        + +D     SEL       H+ K     V
Sbjct: 15   LNVGTVVNGKVTKVEEKHALVDVG-------YKVDGILPISELS----SLHVEK-----V 58

Query: 1221 LSINKEKKLLRLVLRPFQDG---ISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSGVG 1275
              + KE   + + +   +D    +S + VD  ++ D+++   +        I+ ++ G  
Sbjct: 59   ADLLKEGDEISVKVTKLEDDELVLSKREVDADLAWDDLEDKFNNKTTFSVEIADVVKG-- 116

Query: 1276 GLVVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
            GLVV +G     P      HF E          S Y +G+ +  K++E+ R  R      
Sbjct: 117  GLVVDLGVRGFIPASLVERHFVE--------DFSDY-KGKPLDVKIVELDREKRKVI--- 164

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            LS R+ LD ++               K  E +E +    +++G V+ +T  G F+ +   
Sbjct: 165  LSHRAVLDEVADK-------------KKTETLESIQEGSVLEGTVQRLTDFGVFVDIG-G 210

Query: 1391 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
            +D  V +S L+  +VE+P +    G  V  +VL+V+P ++R+ +++K +       ++  
Sbjct: 211  VDGLVHISQLAHYHVETPSEVVAEGDHVKVKVLAVDPENERISLSIKATQPGPWETAK-- 268

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
              S ++VGD++ G +KR+  +G F+ +    + GL H+SE+S +H+   E +    +K+K
Sbjct: 269  --SKINVGDVLEGTVKRLVPFGAFVEL-LPGVEGLVHISEISHEHIGTPEEVLTENQKIK 325

Query: 1511 VKILKVDKEKRRISLGMKS 1529
            VK+L V+ +++R+SL +K+
Sbjct: 326  VKVLDVNFDEQRVSLSIKA 344



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 66/116 (56%), Gaps = 2/116 (1%)

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1474
            GK +  +++ ++   ++V ++ +      A + +   L ++  G ++ G ++R+  +G+F
Sbjct: 146  GKPLDVKIVELDREKRKVILSHRAVLDEVADKKKTETLESIQEGSVLEGTVQRLTDFGVF 205

Query: 1475 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            + I   +  GL H+S+L+  HV+    +   G+ VKVK+L VD E  RISL +K++
Sbjct: 206  VDIGGVD--GLVHISQLAHYHVETPSEVVAEGDHVKVKVLAVDPENERISLSIKAT 259



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 25/342 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV GKV  V+   A+V     V  + P+  +S   + K     K G E+  +V  ++ 
Sbjct: 18  GTVVNGKVTKVEEKHALVDVGYKVDGILPISELSSLHVEKVADLLKEGDEISVKVTKLED 77

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
             + ++ ++  V + LA      +  ++      I  + K G  V    GV+GF P S L
Sbjct: 78  DELVLSKRE--VDADLAWDDLEDKFNNKTTFSVEIADVVKGGLVVDL--GVRGFIPAS-L 132

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED------DLVKLGSL 672
                 E  S Y  G+ +  +I+      R++ LS       V++       + ++ GS+
Sbjct: 133 VERHFVEDFSDYK-GKPLDVKIVELDREKRKVILSHRAVLDEVADKKKTETLESIQEGSV 191

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
           + G V  +T   V V +   G   G +    LA +  H      V+  G     ++L +D
Sbjct: 192 LEGTVQRLTDFGVFVDI---GGVDGLVHISQLAHY--HVETPSEVVAEGDHVKVKVLAVD 246

Query: 732 NESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
            E+  + LS     I + Q  P +   S I+   V+ G V  ++  G FV  L  + G  
Sbjct: 247 PENERISLS-----IKATQPGPWETAKSKINVGDVLEGTVKRLVPFGAFVELLPGVEGLV 301

Query: 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             S+          +     Q ++  +LDVN +  R++LS+K
Sbjct: 302 HISEISHEHIGTPEEVLTENQKIKVKVLDVNFDEQRVSLSIK 343



 Score = 45.4 bits (106), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 18/171 (10%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T   ++ G V++G V  +  FG  V   GGV  L  +  ++ + +  P +    G  +  
Sbjct: 182 TLESIQEGSVLEGTVQRLTDFGVFVDI-GGVDGLVHISQLAHYHVETPSEVVAEGDHVKV 240

Query: 552 RVLGV--KSKRITVTHKKT------LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 603
           +VL V  +++RI+++ K T        KSK+ +           +  G + ++   G FV
Sbjct: 241 KVLAVDPENERISLSIKATQPGPWETAKSKINVGD---------VLEGTVKRLVPFGAFV 291

Query: 604 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               GV+G    SE+  +    P  +    Q +K +++      +R++LS 
Sbjct: 292 ELLPGVEGLVHISEISHEHIGTPEEVLTENQKIKVKVLDVNFDEQRVSLSI 342


>gi|339635169|ref|YP_004726810.1| 30S ribosomal protein S1P [Weissella koreensis KACC 15510]
 gi|420161165|ref|ZP_14667936.1| ribosomal protein S1 [Weissella koreensis KCTC 3621]
 gi|338854965|gb|AEJ24131.1| SSU ribosomal protein S1P [Weissella koreensis KACC 15510]
 gi|394745915|gb|EJF34733.1| ribosomal protein S1 [Weissella koreensis KCTC 3621]
          Length = 432

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 150/280 (53%), Gaps = 43/280 (15%)

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVL 1317
            +E DIV   +++++ G  GLVV +   + G +  + ++N  V D L+ Y +GQ VK +++
Sbjct: 111  NEDDIVEAPVTQVVKG--GLVVDVA-GVRGFIPASMIENRFVQD-LNQY-KGQTVKAQII 165

Query: 1318 EI----SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI-EDLSPNMIVQ 1372
            EI    SR +       LS ++ L    S              + L+++ E+L+   IV+
Sbjct: 166  EINVAESRLI-------LSRKAVLSAERS--------------EALKRVFEELTVGDIVE 204

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +T+ G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  +R+
Sbjct: 205  GKVARMTNFGAFIDLG-GVDGLVHVSEISYERVSQPSDVLSVGEDVKVKVLGLDPEKERI 263

Query: 1433 EVTLKTSDS---RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
             +++K +      +A+Q       N   G ++ G ++RV  +G F+ +    + GL HVS
Sbjct: 264  SLSIKATQPGPWDSAAQ-------NAPEGTVLEGTVRRVVDFGAFVEV-FPGVEGLVHVS 315

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            ++S  HV+N   + +AG+KV+VK+L V+ E++R+SL +K+
Sbjct: 316  QISHQHVENPSDVLKAGDKVQVKVLDVNPERQRLSLSIKA 355



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 114/248 (45%), Gaps = 17/248 (6%)

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 472
           ++ V +V +G GL++D+       PA    S +    V+ L  +YK G  V+ +I+    
Sbjct: 117 EAPVTQVVKG-GLVVDVAGVRGFIPA----SMIENRFVQDL-NQYK-GQTVKAQIIEINV 169

Query: 473 LEGLAT----GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
            E         +L A   E L     ++  G +V+GKV  + +FGA +   GGV  L  +
Sbjct: 170 AESRLILSRKAVLSAERSEALKRVFEELTVGDIVEGKVARMTNFGAFIDL-GGVDGLVHV 228

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDR 586
             +S   + +P     VG ++  +VLG+  + +RI+++ K T      +   +  E T  
Sbjct: 229 SEISYERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKATQPGPWDSAAQNAPEGT-- 286

Query: 587 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
            +  G + ++   G FV  + GV+G    S++       PS +   G  V+ +++   P 
Sbjct: 287 -VLEGTVRRVVDFGAFVEVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPE 345

Query: 647 SRRINLSF 654
            +R++LS 
Sbjct: 346 RQRLSLSI 353



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 145/372 (38%), Gaps = 66/372 (17%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQ----VVKCRIMSS------IPASRRINL--SFM 655
           GV+G  P  EL  D   + + +  VG     VVK  I S       I + R++    ++ 
Sbjct: 45  GVEGVIPARELTSDRDADVNDLVKVGDKIEAVVKMPITSEKEGYSWILSKRQLEARRAWE 104

Query: 656 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH--ATV 713
              ++ +EDD+V+     + V  VV    VV     +G+   ++        L       
Sbjct: 105 EIASKYNEDDIVE-----APVTQVVKGGLVVDVAGVRGFIPASMIENRFVQDLNQYKGQT 159

Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL-INSAQQLPSDASHIHPNSVVHGYVCNI 772
           +K+         Q++ ++   S L+LS K  L    ++ L      +    +V G V  +
Sbjct: 160 VKA---------QIIEINVAESRLILSRKAVLSAERSEALKRVFEELTVGDIVEGKVARM 210

Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
              G F+  LG + G    S+    + +  S    VG+ V+  +L ++ E  RI+LS+K 
Sbjct: 211 TNFGAFID-LGGVDGLVHVSEISYERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKA 269

Query: 833 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
           +     D                  S+  N  E         G+V+EG V    DFG  V
Sbjct: 270 TQPGPWD------------------SAAQNAPE---------GTVLEGTVRRVVDFGAFV 302

Query: 893 SFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDR 945
             E    V G +   Q++   VE       +G  +Q  +LDV    + + LS+K +    
Sbjct: 303 --EVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPERQRLSLSIKALTEAP 360

Query: 946 FREANSNRQAQK 957
            RE   N   ++
Sbjct: 361 AREGGDNNDGEQ 372



 Score = 49.3 bits (116), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 152/362 (41%), Gaps = 43/362 (11%)

Query: 492 THSDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
              DVK G VV G+V+ +D +   +V   G GV+ + P   ++           KVG ++
Sbjct: 14  AQPDVKVGDVVTGEVLTIDDAHQVVVGIDGAGVEGVIPARELTSDRDADVNDLVKVGDKI 73

Query: 550 VFRVLGVKSKRITVTHKK-----TLVKSKLAILSSYAEATDRL----ITHGWITKIEKHG 600
              V      ++ +T +K      L K +L    ++ E   +     I    +T++ K G
Sbjct: 74  EAVV------KMPITSEKEGYSWILSKRQLEARRAWEEIASKYNEDDIVEAPVTQVVKGG 127

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSF 654
             V    GV+GF P S +  +   +  + Y  GQ VK +I+      S +  SR+  LS 
Sbjct: 128 LVVDVA-GVRGFIPASMIE-NRFVQDLNQYK-GQTVKAQIIEINVAESRLILSRKAVLSA 184

Query: 655 MMKPT--RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 712
                  RV E+  + +G +V G V  +T     + +   G   G +    ++   E  +
Sbjct: 185 ERSEALKRVFEE--LTVGDIVEGKVARMTNFGAFIDL---GGVDGLVHVSEIS--YERVS 237

Query: 713 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYV 769
               V+  G +   ++L LD E   + LS     I + Q  P D  A +    +V+ G V
Sbjct: 238 QPSDVLSVGEDVKVKVLGLDPEKERISLS-----IKATQPGPWDSAAQNAPEGTVLEGTV 292

Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
             +++ G FV     + G    S+       + S     G  V+  +LDVN E  R++LS
Sbjct: 293 RRVVDFGAFVEVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQVKVLDVNPERQRLSLS 352

Query: 830 LK 831
           +K
Sbjct: 353 IK 354


>gi|229820681|ref|YP_002882207.1| 30S ribosomal protein S1 [Beutenbergia cavernae DSM 12333]
 gi|229566594|gb|ACQ80445.1| RNA binding S1 domain protein [Beutenbergia cavernae DSM 12333]
          Length = 488

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 173/369 (46%), Gaps = 41/369 (11%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G + KVD +  LL I    K +  IL          + +    +G+ V   VL  
Sbjct: 39   GDIVEGTIVKVDRDEVLLDIG--YKTEGVILSRELSIKHDVDPEEVVSVGERVEALVL-- 94

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
             KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++ IG 
Sbjct: 95   QKEDKEGRLLLSKKR-----AQYERAWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGL 147

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSS 1342
              +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+   S 
Sbjct: 148  RGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQTQSE 200

Query: 1343 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
              S+ L+T              L    I  G V ++ + G F+ L   +D  V +S LS 
Sbjct: 201  VRSTFLAT--------------LQKGQIRNGVVSSIVNFGAFVDLG-GVDGLVHVSELSW 245

Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIV 1461
             +++ P +   +G+ V   VL VE   +RV ++LK +      Q      +  H +G +V
Sbjct: 246  KHIDHPSEVVEVGQEVTVEVLDVELDRERVSLSLKATQEDPWQQ-----FARTHAIGQVV 300

Query: 1462 IGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKR 1521
             G++ ++  +G F+ +E+  + GL H+SEL+  HV+  E + + GE+V VK++ +D E+R
Sbjct: 301  PGKVTKLVPFGAFVRVED-GIEGLVHISELAVRHVEVPEQVAKVGEEVFVKVIDIDLERR 359

Query: 1522 RISLGMKSS 1530
            RISL +K +
Sbjct: 360  RISLSLKQA 368



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G +  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LQKGQIRNGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 267

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V+   +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VELDRERVSLSLKATQEDPWQQFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +     P  +  VG+ V  +++      RRI+LS 
Sbjct: 325 HISELAVRHVEVPEQVAKVGEEVFVKVIDIDLERRRISLSL 365



 Score = 44.3 bits (103), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 144/367 (39%), Gaps = 50/367 (13%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  I  G I K+++    +      +G     EL +    +P  +  VG+ V+  ++   
Sbjct: 38  DGDIVEGTIVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPEEVVSVGERVEALVLQKE 97

Query: 645 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS        +   + K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLLLSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 759
              A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLATL 209

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               + +G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV
Sbjct: 210 QKGQIRNGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDV 268

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
             +  R++LSLK +        F + H                           IG V+ 
Sbjct: 269 ELDRERVSLSLK-ATQEDPWQQFARTH--------------------------AIGQVVP 301

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAER 932
           GKV +   FG  V  E+   + G +   +LA   VE        G  +   ++D+    R
Sbjct: 302 GKVTKLVPFGAFVRVEDG--IEGLVHISELAVRHVEVPEQVAKVGEEVFVKVIDIDLERR 359

Query: 933 LVDLSLK 939
            + LSLK
Sbjct: 360 RISLSLK 366



 Score = 44.3 bits (103), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 130/285 (45%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++ +  + T + +G I  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRSTFLAT-LQKGQIRNGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVELDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHAI--GQVVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L+  +VE PE+   +G+ V  +V+ ++   +R+ ++LK ++
Sbjct: 325  HISELAVRHVEVPEQVAKVGEEVFVKVIDIDLERRRISLSLKQAN 369



 Score = 41.2 bits (95), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + +     +S    V P +   VG  +   VL  + 
Sbjct: 39  GDIVEGTIVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPEEVVSVGERVEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLLLSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLATLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQIRNGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L ++ +   + LS K +  +  QQ     +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLDVELDRERVSLSLKATQEDPWQQF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVEVPEQVAKVGEEVFVKVIDIDLERRRISLSLKQA 368


>gi|452909695|ref|ZP_21958379.1| SSU ribosomal protein S1p [Kocuria palustris PEL]
 gi|452835067|gb|EME37864.1| SSU ribosomal protein S1p [Kocuria palustris PEL]
          Length = 498

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 192/419 (45%), Gaps = 59/419 (14%)

Query: 1138 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1191
            ++     + V++IG++  F    D +I     G  V G V KVD +  LL I    +  +
Sbjct: 1    MTTTTPQVAVNDIGTEEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVI 60

Query: 1192 FILDSAYEPSELQEFQRRFH------IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1245
                    PS     +   +      +G  +   VL+  KE K  RL+L   +       
Sbjct: 61   --------PSRELSIKHDINPDSVVAVGDEIEALVLT--KEDKEGRLILSKKRAQYERAW 110

Query: 1246 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1305
             DI     +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G
Sbjct: 111  GDI-----EKIKEEDGVVNGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG 163

Query: 1306 YDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1365
                Q ++ K++E+ +      +V LS R+ L+   S   SD              +  L
Sbjct: 164  ----QQLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSDF-------------LNKL 203

Query: 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1425
                +  G+V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V
Sbjct: 204  QKGQVRTGHVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPGEVVEVGQEVKVEVLDV 262

Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLV 1483
            +   +RV ++LK      A+Q +   L +  H +G +V G++ ++  +G F+ +E+  + 
Sbjct: 263  DMDRERVSLSLK------ATQEDPWQLFARTHALGQVVPGKVTKLVPFGAFVRVED-GIE 315

Query: 1484 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1542
            GL H+SEL++ HVD  E +   GE++ VK++ +D ++RRISL +K +    D D+ +  
Sbjct: 316  GLVHISELAQRHVDMAEQVVSVGEELFVKVIDIDLDRRRISLSLKQANEGVDPDSTEFD 374



 Score = 45.4 bits (106), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 124/281 (44%), Gaps = 34/281 (12%)

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL- 727
           G LV G V  V  + V++ +   GY ++G IP+  L+  ++H     SV+  G E + L 
Sbjct: 33  GDLVEGTVVKVDRDEVLLDI---GYKTEGVIPSRELS--IKHDINPDSVVAVGDEIEALV 87

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLT 786
           L  +++   L+LS K +    A     D   I   + VV+G V  +++ G  +     L 
Sbjct: 88  LTKEDKEGRLILSKKRAQYERAW---GDIEKIKEEDGVVNGTVIEVVKGGLILDI--GLR 142

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
           GF P S     +  DL+   Y+GQ + + I++++     + LS +++    T  S ++  
Sbjct: 143 GFLPASLVEMRRVRDLAP--YIGQQLEAKIIELDKNRNNVVLS-RRAWLEQT-QSEVRSD 198

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
           FL   K+   Q    + S +     F+    ++G VH S      +S++          H
Sbjct: 199 FL--NKLQKGQVRTGHVSSIVNFGAFVDLGGVDGLVHVSE-----LSWK----------H 241

Query: 907 HQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
               G  VE G  ++  +LDV      V LSLK    D ++
Sbjct: 242 IDHPGEVVEVGQEVKVEVLDVDMDRERVSLSLKATQEDPWQ 282



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 145/348 (41%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    + P     VG E+   VL  + 
Sbjct: 33  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDINPDSVVAVGDEIEALVLTKED 92

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E     + +G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKIKEEDG--VVNGTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSDFLNKLQ 204

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + +G V  +      V +   G   G +    L+  H++H      V++ G E   +
Sbjct: 205 KGQVRTGHVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVEVGQEVKVE 258

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 259 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 314

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VG+ +   ++D++ +  RI+LSLKQ+
Sbjct: 315 EGLVHISELAQRHVDMAEQVVSVGEELFVKVIDIDLDRRRISLSLKQA 362


>gi|408410414|ref|ZP_11181631.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
 gi|409350333|ref|ZP_11233493.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
 gi|407875408|emb|CCK83437.1| 30S ribosomal protein S1 [Lactobacillus sp. 66c]
 gi|407877499|emb|CCK85551.1| 30S ribosomal protein S1 [Lactobacillus equicursoris CIP 110162]
          Length = 401

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 139/286 (48%), Gaps = 32/286 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            D +Q    EG  + G+++  + G  GL+V +G    G +  + + N  VSD L  Y  G+
Sbjct: 102  DKLQKDFEEGKTIEGKVTSSVRG--GLLVDVGTR--GFLPASLISNRFVSD-LKPY-IGK 155

Query: 1311 FVKCKVLEISRTVRGTF--HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
             +K K+ EI          H EL          +  S  +  DV                
Sbjct: 156  TIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDV---------------- 199

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
              V+G V  +T  G F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++  
Sbjct: 200  --VEGRVSRLTQFGAFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDND 256

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
              R+ +++K ++     Q+     +NL+ GDI+ G++K + ++G F+ + +  + GL HV
Sbjct: 257  RNRISLSIKQTEPSPFEQA----TANLNEGDIIEGEVKSLTNFGAFVEVAD-GIQGLVHV 311

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
            SE+S  HVD    +   G+KVKVK+L VD  +RRISL +K +  +N
Sbjct: 312  SEISNKHVDKPSDVLTVGQKVKVKVLNVDPSERRISLSIKQADPEN 357



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 121/251 (48%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  +  FGA V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTQFGAFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRL 587
            +S   + KP    KVG ++  +V+G+ +   RI+++ K+T         S + +AT  L
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTE-------PSPFEQATANL 279

Query: 588 ----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               I  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++ 
Sbjct: 280 NEGDIIEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNV 339

Query: 644 IPASRRINLSF 654
            P+ RRI+LS 
Sbjct: 340 DPSERRISLSI 350



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 23/197 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            +N+ + +  GD+V GR+S++     G  V IG  + G VH +E+    V  P      GQ
Sbjct: 188  ENVASQLVVGDVVEGRVSRLTQF--GAFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQ 244

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
             VK KV+ I                     +  N   LS     P    +   +L+   I
Sbjct: 245  DVKVKVIGID--------------------NDRNRISLSIKQTEPSPFEQATANLNEGDI 284

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            ++G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+V+P  +
Sbjct: 285  IEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPSER 344

Query: 1431 RVEVTLKTSDSRTASQS 1447
            R+ +++K +D   AS S
Sbjct: 345  RISLSIKQADPENASSS 361



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 151/369 (40%), Gaps = 45/369 (12%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVKPGKKFKVGA 547
           +VKPG +V   V++V+     V   G GV+ +      +        E VKPG  FK   
Sbjct: 16  EVKPGDIVDVNVLSVEDGQINVGVQGAGVEGVITRRDFTNDRSVNLREAVKPGDTFKA-- 73

Query: 548 ELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
             V R  G   +        T VK + A      +  +     G +T   + G  V    
Sbjct: 74  -YVVRRAGGDKENGEFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSSVRGGLLVDV-- 130

Query: 608 GVQGFAPRSELG------LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPT 659
           G +GF P S +       L P        ++G+ +K +I    PA  R+ LS   +++  
Sbjct: 131 GTRGFLPASLISNRFVSDLKP--------YIGKTIKVKITEIDPAKNRLILSHKELIEEE 182

Query: 660 RVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
           R    + V     +G +V G V  +T     V +   G   G +    ++   +H     
Sbjct: 183 REQAFENVASQLVVGDVVEGRVSRLTQFGAFVDI---GGVDGLVHISEIS--YKHVDKPS 237

Query: 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIE 774
            V+K G +   +++ +DN+ + + LS K +  +  +Q     ++++   ++ G V ++  
Sbjct: 238 DVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSPFEQA---TANLNEGDIIEGEVKSLTN 294

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS- 833
            G FV     + G    S+  +      S    VGQ V+  +L+V+    RI+LS+KQ+ 
Sbjct: 295 FGAFVEVADGIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPSERRISLSIKQAD 354

Query: 834 ---CCSSTD 839
                SS D
Sbjct: 355 PENASSSND 363



 Score = 45.4 bits (106), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 143/366 (39%), Gaps = 55/366 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R +   D           G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLREAVKPGDTFKAYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 779
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  + + G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTQFGAFV 214

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSP-- 271

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                     E+  A L                  G +IEG+V    +FG   +F E +D
Sbjct: 272 ---------FEQATANLNE----------------GDIIEGEVKSLTNFG---AFVEVAD 303

Query: 900 -VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            + G +   +++   V+        G  ++  +L+V  +ER + LS+K    +    +N 
Sbjct: 304 GIQGLVHVSEISNKHVDKPSDVLTVGQKVKVKVLNVDPSERRISLSIKQADPENASSSND 363

Query: 952 NRQAQK 957
             +A++
Sbjct: 364 RPRARR 369


>gi|395204361|ref|ZP_10395301.1| 30S ribosomal protein S1 [Propionibacterium humerusii P08]
 gi|422440242|ref|ZP_16517056.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3]
 gi|422471366|ref|ZP_16547866.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2]
 gi|422572458|ref|ZP_16648028.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1]
 gi|313837427|gb|EFS75141.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2]
 gi|314929361|gb|EFS93192.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1]
 gi|314971634|gb|EFT15732.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3]
 gi|328907023|gb|EGG26789.1| 30S ribosomal protein S1 [Propionibacterium humerusii P08]
          Length = 498

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 182/397 (45%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            +TV ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VTVDDLGSTEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G    Q ++ 
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEA 188

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S                   +  L    I +G 
Sbjct: 189  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQSF-------------LHQLQKGQIRKGV 232

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 233  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSL 291

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      + LH +G IV G++ ++  +G F+ +E+  + GL HVSEL+E
Sbjct: 292  SLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAE 345

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 346  RHVEIPEQVVGVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R S    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQSFLHQLQ 224

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 44.7 bits (104), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 113/251 (45%), Gaps = 37/251 (14%)

Query: 1197 AYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             + P+ L E +R    + ++G+ +   ++ ++K +  + L  R + +    +        
Sbjct: 163  GFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEV------- 215

Query: 1253 MQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
             Q+F+H+   G I  G +S I++   G  V +G  + G VH +EL    +  P    + G
Sbjct: 216  RQSFLHQLQKGQIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 272

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
            Q V  +VL++         V LSL+++ +                P +   ++  +    
Sbjct: 273  QPVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWQAFARLHQI--GQ 312

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +++ ++   
Sbjct: 313  IVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLDR 372

Query: 1430 KRVEVTLKTSD 1440
            +R+ ++LK ++
Sbjct: 373  RRISLSLKQAN 383


>gi|222151374|ref|YP_002560530.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402]
 gi|222120499|dbj|BAH17834.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402]
          Length = 387

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 108/191 (56%), Gaps = 16/191 (8%)

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            K  ++++++    +++G V  +T+ G F+ +  ++D  V +S ++  +++  E    IG 
Sbjct: 181  KKEQRLDEIEVGSVIEGEVLRITNFGAFVDIG-EVDGLVHISQITHDHIDKVEDALSIGD 239

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
             V  +VLSV+  ++RV +++K +        E        +GDIV G++ R+ ++G F+ 
Sbjct: 240  KVKVKVLSVDKEAERVSLSMKAALPGPFETIE----EKFSIGDIVDGEVVRLANFGAFVE 295

Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK-------- 1528
            I +  L GL H+S++S DH+ N   +   G+KVKVKIL ++KE++RI L +K        
Sbjct: 296  I-DKGLQGLVHISQISHDHIGNPSEVLEPGQKVKVKILDINKEEKRIGLSIKATQEQVED 354

Query: 1529 --SSYFKNDAD 1537
              ++Y  ND++
Sbjct: 355  FDTTYLSNDSN 365



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            +G+++  ++  ++    RV +  K  ++      +   L  + VG ++ G++ R+ ++G 
Sbjct: 148  VGQVLTLKIEELDQEKNRVILNHKVIEAEENKVKKEQRLDEIEVGSVIEGEVLRITNFGA 207

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            F+ I   +  GL H+S+++ DH+D +E     G+KVKVK+L VDKE  R+SL MK++
Sbjct: 208  FVDIGEVD--GLVHISQITHDHIDKVEDALSIGDKVKVKVLSVDKEAERVSLSMKAA 262



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 6/177 (3%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G V++G+V+ + +FGA V   G V  L  +  ++   I K      +G ++  +VL
Sbjct: 188 EIEVGSVIEGEVLRITNFGAFVDI-GEVDGLVHISQITHDHIDKVEDALSIGDKVKVKVL 246

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V  +++R++++ K  L      I   ++      I  G + ++   G FV    G+QG 
Sbjct: 247 SVDKEAERVSLSMKAALPGPFETIEEKFSIGD---IVDGEVVRLANFGAFVEIDKGLQGL 303

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL 669
              S++  D    PS +   GQ VK +I+      +RI LS      +V + D   L
Sbjct: 304 VHISQISHDHIGNPSEVLEPGQKVKVKILDINKEEKRIGLSIKATQEQVEDFDTTYL 360



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 150/366 (40%), Gaps = 34/366 (9%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++ G  VKG V A++    ++   G     + P+  +S   I    +  ++G E+   V
Sbjct: 12  EIQEGDKVKGTVQAIEEKHVVLNLDGAKYDGIIPISQLSSLHIENAEEVVQIGDEIEAFV 71

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGV 609
             ++ K     +   L K +L    S+    ++          + +  K G  V    G+
Sbjct: 72  TKIEDKEEDGHY--ILSKRQLDESESFESLKEKFENGETLEAEVKEAVKGGLVVDV--GL 127

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSED-- 664
           +GF P S +  +   E  S Y VGQV+  +I        R+ L+  +   +  +V ++  
Sbjct: 128 RGFIPASLISTNY-IEDFSSY-VGQVLTLKIEELDQEKNRVILNHKVIEAEENKVKKEQR 185

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHATVMKSVIK 719
            D +++GS++ G V  +T     V +   G   G +    +     D +E A  +   +K
Sbjct: 186 LDEIEVGSVIEGEVLRITNFGAFVDI---GEVDGLVHISQITHDHIDKVEDALSIGDKVK 242

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
                 ++L +D E+  + LS K +L    + +    S      +V G V  +   G FV
Sbjct: 243 V-----KVLSVDKEAERVSLSMKAALPGPFETIEEKFS---IGDIVDGEVVRLANFGAFV 294

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK--QSCCSS 837
                L G    S+       + S+    GQ V+  ILD+N E  RI LS+K  Q     
Sbjct: 295 EIDKGLQGLVHISQISHDHIGNPSEVLEPGQKVKVKILDINKEEKRIGLSIKATQEQVED 354

Query: 838 TDASFM 843
            D +++
Sbjct: 355 FDTTYL 360



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 27/224 (12%)

Query: 1036 RLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 1095
            R++L  K I E E +  K+ ++    +VGS+++ E+  I      +  G    G +HI++
Sbjct: 165  RVILNHKVI-EAEENKVKKEQRLDEIEVGSVIEGEVLRITNFGAFVDIG-EVDGLVHISQ 222

Query: 1096 VNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLL 1155
            +  D  + VE+  S   IG  V  ++++  +K   + S   + ++     T+ E      
Sbjct: 223  ITHDHIDKVEDALS---IGDKVKVKVLS-VDKEAERVSLSMKAALPGPFETIEE------ 272

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFH 1211
                  SIG  V G V ++ N  A + I + L+  + I   +++    PSE+ E      
Sbjct: 273  ----KFSIGDIVDGEVVRLANFGAFVEIDKGLQGLVHISQISHDHIGNPSEVLE------ 322

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISD-KTVDISNDNMQ 1254
             G+ V   +L INKE+K + L ++  Q+ + D  T  +SND+ Q
Sbjct: 323  PGQKVKVKILDINKEEKRIGLSIKATQEQVEDFDTTYLSNDSNQ 366



 Score = 47.8 bits (112), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 52/245 (21%)

Query: 730 LDNESSNLLLS-----AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           LD E + ++L+     A+ + +   Q+L      I   SV+ G V  I   G FV  +G 
Sbjct: 159 LDQEKNRVILNHKVIEAEENKVKKEQRL----DEIEVGSVIEGEVLRITNFGAFVD-IGE 213

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+        +     +G  V+  +L V+ E  R++LS+K +     +     
Sbjct: 214 VDGLVHISQITHDHIDKVEDALSIGDKVKVKVLSVDKEAERVSLSMKAALPGPFET---- 269

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF- 903
               +EEK                   F IG +++G+V    +FG  V  +    + G  
Sbjct: 270 ----IEEK-------------------FSIGDIVDGEVVRLANFGAFVEID--KGLQGLV 304

Query: 904 ----ITHHQLAGAT--VESGSVIQAAILDVAKAERLVDLSLKTV------FIDRFREANS 951
               I+H  +   +  +E G  ++  ILD+ K E+ + LS+K        F   +   +S
Sbjct: 305 HISQISHDHIGNPSEVLEPGQKVKVKILDINKEEKRIGLSIKATQEQVEDFDTTYLSNDS 364

Query: 952 NRQAQ 956
           N++ Q
Sbjct: 365 NQENQ 369



 Score = 42.0 bits (97), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 83/187 (44%), Gaps = 23/187 (12%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            I  G ++ G + +I +   G  V IG  + G VH +++ +  +         G  VK KV
Sbjct: 189  IEVGSVIEGEVLRITNF--GAFVDIG-EVDGLVHISQITHDHIDKVEDALSIGDKVKVKV 245

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L + +       V LS++++L G               P + +E  E  S   IV G V 
Sbjct: 246  LSVDKEAE---RVSLSMKAALPG---------------PFETIE--EKFSIGDIVDGEVV 285

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             + + G F+ + + L   V +S +S  ++ +P +    G+ V  ++L +    KR+ +++
Sbjct: 286  RLANFGAFVEIDKGLQGLVHISQISHDHIGNPSEVLEPGQKVKVKILDINKEEKRIGLSI 345

Query: 1437 KTSDSRT 1443
            K +  + 
Sbjct: 346  KATQEQV 352


>gi|377574946|ref|ZP_09803956.1| 30S ribosomal protein S1 [Mobilicoccus pelagius NBRC 104925]
 gi|377536455|dbj|GAB49121.1| 30S ribosomal protein S1 [Mobilicoccus pelagius NBRC 104925]
          Length = 485

 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 191/404 (47%), Gaps = 53/404 (13%)

Query: 1138 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1187
            +++    + +++IGS+  L    D +I     G  V G + KVD +  LL I       +
Sbjct: 1    MTVSHPEIAINDIGSEEDLLAAIDATIKHFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVI 60

Query: 1188 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1247
             ++   +    +P+E+        +G       L + KE K  RL+L   +        +
Sbjct: 61   PSRELSIKHDVDPNEV--------VGVGDEVEALVLQKEDKEGRLILSKKR-----AQYE 107

Query: 1248 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1307
             +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +
Sbjct: 108  RAWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE 165

Query: 1308 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1367
                ++ K++E+ +      +V LS R+ L+   S   ++              +++L  
Sbjct: 166  ----IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LQELGK 205

Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1427
              +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+ 
Sbjct: 206  GQVRTGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVKVEVLDVDM 264

Query: 1428 LSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLC 1486
              +RV ++LK +      +    + +  H +G +V G++ ++  +G F+ +++  + GL 
Sbjct: 265  DRERVSLSLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFVRVDD-GIEGLV 318

Query: 1487 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            H+SEL+E HV+  E + + G+++ VK++ +D E+RRISL +K +
Sbjct: 319  HISELAERHVELPEQVVQVGQEIFVKVIDIDLERRRISLSLKQA 362



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 136/295 (46%), Gaps = 37/295 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 107  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 165

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T      N    + +G +  G +S I++   
Sbjct: 166  IEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRTNFLQELGKGQVRTGVVSSIVNF-- 219

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ VK +VL++         V LSL++
Sbjct: 220  GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVEVGQEVKVEVLDVDMDRE---RVSLSLKA 275

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +H  +   +    +V G V  +   G F+ +   ++  V
Sbjct: 276  TQE---------------DPWQHFARTHAI--GQVVPGKVTKLVPFGAFVRVDDGIEGLV 318

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
             +S L++ +VE PE+   +G+ +  +V+ ++   +R+ ++LK ++  + + +E +
Sbjct: 319  HISELAERHVELPEQVVQVGQEIFVKVIDIDLERRRISLSLKQANDPSVATTEFD 373



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 152/353 (43%), Gaps = 31/353 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 33  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVGVGDEVEALVLQKED 92

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    + 
Sbjct: 149 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQELG 204

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVKVE 258

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 259 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAFVRVDDGI 314

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            G    S+  +       +   VGQ +   ++D++ E  RI+LSLKQ+   S 
Sbjct: 315 EGLVHISELAERHVELPEQVVQVGQEIFVKVIDIDLERRRISLSLKQANDPSV 367


>gi|145295496|ref|YP_001138317.1| 30S ribosomal protein S1 [Corynebacterium glutamicum R]
 gi|140845416|dbj|BAF54415.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 486

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 187/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G    Q ++ 
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLDPYIG----QELEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 170  KIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LHQLQKGQVRKGV 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNL--SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            +LK      A+Q +   +   N  VG IV G++ ++  +G F+ +E   + GL H+SEL+
Sbjct: 273  SLK------ATQEDPWRVFARNHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELA 325

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            + HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 326  QRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARNHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    A +     +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARNHAVGQIVPGKVTKLVPFGAFVR 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 405



 Score = 41.2 bits (95), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 108/248 (43%), Gaps = 37/248 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R      +IG+ +   ++ ++K +  + L  R F +    +           
Sbjct: 147  PASLVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEV-------RSE 199

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  P      G  V
Sbjct: 200  FLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEV 256

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         V LSL+++ +                P +   +  + +   IV 
Sbjct: 257  TVEVLDVDLDRE---RVSLSLKATQE---------------DPWRVFAR--NHAVGQIVP 296

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L+  +VE P++   +G+ V  +V+ ++   +R+
Sbjct: 297  GKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRI 356

Query: 1433 EVTLKTSD 1440
             ++LK +D
Sbjct: 357  SLSLKQAD 364


>gi|422554450|ref|ZP_16630222.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2]
 gi|314987702|gb|EFT31793.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2]
          Length = 498

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 182/397 (45%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL----FIL 1194
            + V ++GS   F    D +I     G  V+G V KVD +  LL I    ++ +      +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTESVIPSKELSI 87

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G    Q ++ 
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEA 188

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S    +              +  L    I +G 
Sbjct: 189  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LHQLQKGQIRKGV 232

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 233  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSL 291

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      + LH +G IV G++ ++  +G F+ +E+  + GL HVSEL+E
Sbjct: 292  SLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAE 345

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 346  RHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      +++ P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTESVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 45.1 bits (105), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 111/248 (44%), Gaps = 37/248 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R    + ++G+ +   ++ ++K +  + L  R + +    +         Q 
Sbjct: 166  PASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEV-------RQN 218

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+H+   G I  G +S I++   G  V +G  + G VH +EL    +  P    + GQ V
Sbjct: 219  FLHQLQKGQIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPV 275

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         V LSL+++ +                P +   ++  +    IV 
Sbjct: 276  TVEVLDVDMDRE---RVSLSLKATQE---------------DPWQAFARLHQI--GQIVP 315

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +++ ++   +R+
Sbjct: 316  GKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRI 375

Query: 1433 EVTLKTSD 1440
             ++LK ++
Sbjct: 376  SLSLKQAN 383


>gi|417972279|ref|ZP_12613190.1| 30S ribosomal protein S1 [Corynebacterium glutamicum S9114]
 gi|344043437|gb|EGV39130.1| 30S ribosomal protein S1 [Corynebacterium glutamicum S9114]
          Length = 486

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 185/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G    Q ++ 
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLDPYIG----QELEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 170  KIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LHQLQKGQVRKGV 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++
Sbjct: 273  SLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQ 326

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 327  RHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 405



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 107/248 (43%), Gaps = 37/248 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R      +IG+ +   ++ ++K +  + L  R F +    +           
Sbjct: 147  PASLVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEV-------RSE 199

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  P      G  V
Sbjct: 200  FLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEV 256

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         V LSL+++ +                P +   +    +   IV 
Sbjct: 257  TVEVLDVDLDRE---RVSLSLKATQE---------------DPWRVFARTH--AVGQIVP 296

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L+  +VE P++   +G+ V  +V+ ++   +R+
Sbjct: 297  GKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRI 356

Query: 1433 EVTLKTSD 1440
             ++LK +D
Sbjct: 357  SLSLKQAD 364


>gi|422455909|ref|ZP_16532578.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1]
 gi|315107101|gb|EFT79077.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1]
          Length = 498

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 179/397 (45%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+      F          L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEVVNVGDEFE--------ALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G    Q ++ 
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEA 188

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S    +              +  L    I +G 
Sbjct: 189  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LHQLQKGQIRKGV 232

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 233  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSL 291

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      + LH +G IV G++ ++  +G F+ +E+  + GL HVSEL+E
Sbjct: 292  SLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAE 345

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 346  RHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 150/352 (42%), Gaps = 39/352 (11%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS------EFEIVKPGKKFKVGAELVFR 552
           G +V G V+ VD    ++      + + P   +S       FE+V  G +F    E + +
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEF----EALVQ 108

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
               K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF
Sbjct: 109 QKEDKEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGF 164

Query: 613 APRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            P S  E+      +P    +VGQ ++ +I+      +++  SRR  L       R +  
Sbjct: 165 LPASLVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFL 220

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H + +  V +P   
Sbjct: 221 HQLQKGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV 277

Query: 724 FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRF 781
             ++L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR 
Sbjct: 278 --EVLDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRV 330

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
              + G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 331 EDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 45.1 bits (105), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 111/248 (44%), Gaps = 37/248 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R    + ++G+ +   ++ ++K +  + L  R + +    +         Q 
Sbjct: 166  PASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEV-------RQN 218

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+H+   G I  G +S I++   G  V +G  + G VH +EL    +  P    + GQ V
Sbjct: 219  FLHQLQKGQIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPV 275

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         V LSL+++ +                P +   ++  +    IV 
Sbjct: 276  TVEVLDVDMDRE---RVSLSLKATQE---------------DPWQAFARLHQI--GQIVP 315

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +++ ++   +R+
Sbjct: 316  GKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRI 375

Query: 1433 EVTLKTSD 1440
             ++LK ++
Sbjct: 376  SLSLKQAN 383



 Score = 40.8 bits (94), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 54/291 (18%)

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
           G +VSG V  V  + V++ +   GY ++G IP++ L+  ++H      V+  G EF+ L+
Sbjct: 53  GDIVSGTVVKVDRDEVLLDI---GYKTEGVIPSKELS--IKHDVDPFEVVNVGDEFEALV 107

Query: 729 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
              +++   L+LS K +    A    +Q+  +      + VV G V  +++ G  V    
Sbjct: 108 QQKEDKEGRLILSKKRAQYERAWGTIEQIKEE------DGVVTGTVIEVVKGGLIVDI-- 159

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
            L GF P S     +  DL    YVGQ + + I++++     + LS +++    T +   
Sbjct: 160 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVR 216

Query: 844 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
           Q +FL +     LQ                 G + +G V    +FG  V       V G 
Sbjct: 217 Q-NFLHQ-----LQK----------------GQIRKGVVSSIVNFGAFVDL---GGVDGL 251

Query: 904 ITHHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
           +   +L+          VE G  +   +LDV      V LSLK    D ++
Sbjct: 252 VHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQ 302


>gi|405983923|ref|ZP_11042228.1| ribosomal protein S1 [Slackia piriformis YIT 12062]
 gi|404388738|gb|EJZ83820.1| ribosomal protein S1 [Slackia piriformis YIT 12062]
          Length = 396

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 148/294 (50%), Gaps = 37/294 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            G++V G + +++ G  GL++ IG   +      +L+ +   D   G +    ++ +V+E+
Sbjct: 121  GEVVTGEVIEVVKG--GLILDIGLRGFLPASLVDLRRVKDLDMYLGTE----IEARVIEM 174

Query: 1320 SRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1378
             R      +V LS R  L+ G  +  +  LS               L+  M ++G V ++
Sbjct: 175  DRN---RNNVVLSRRVLLEEGRKNERAEILSK--------------LAKGMRLKGTVSSI 217

Query: 1379 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
               G F+ L   +D  V +S LS  +V  P +   +G  V   VL V+   +R+ + LK 
Sbjct: 218  VDFGAFVDLG-GIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDLQRERISLGLK- 275

Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
               +T     +  + +  VG IV G++ ++  +G FI + N N+ GL H+SE++  H+D 
Sbjct: 276  ---QTTEDPWLKLVESYPVGSIVDGKVTKIVPFGAFIELGN-NVEGLVHISEMAAKHIDT 331

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1552
               + + G++VKVK+++++ ++RRISL MK++     AD L    E E DE I+
Sbjct: 332  PAQVVKVGQEVKVKVMEINPDRRRISLSMKAA-----ADELGF--EIEVDETIQ 378



 Score = 77.4 bits (189), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +  GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 202 SKLAKGMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEV 260

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V  + +RI++  K+T     L ++ SY   +   I  G +TKI   G F+   N V+G
Sbjct: 261 LDVDLQRERISLGLKQTTEDPWLKLVESYPVGS---IVDGKVTKIVPFGAFIELGNNVEG 317

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+       P+ +  VGQ VK ++M   P  RRI+LS 
Sbjct: 318 LVHISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRISLSM 360



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/365 (19%), Positives = 148/365 (40%), Gaps = 50/365 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + K+E     +      +G  P  EL +    +PS +  +G  ++  ++      
Sbjct: 36  LVKGTVVKLEHDEVLLDIGFKSEGVIPSRELSIRKDADPSDIVALGDEIEALVLQKEDKD 95

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +   +  ++  K G +V+G V  V    +++ +  +G+   ++     
Sbjct: 96  GRLILSKKRAEYERAWIQVEEKFKAGEVVTGEVIEVVKGGLILDIGLRGFLPASLVDLRR 155

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 762
              L+           G E + +++ +D   +N++LS +  L    +   ++  S +   
Sbjct: 156 VKDLDMYL--------GTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLAKG 207

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 208 MRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDLQ 266

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             RI+L LKQ+                                LK VE + +GS+++GKV
Sbjct: 267 RERISLGLKQTTEDPW---------------------------LKLVESYPVGSIVDGKV 299

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVD 935
            +   FG  +     ++V G +   ++A   +++       G  ++  ++++    R + 
Sbjct: 300 TKIVPFGAFIEL--GNNVEGLVHISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRIS 357

Query: 936 LSLKT 940
           LS+K 
Sbjct: 358 LSMKA 362



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 151/354 (42%), Gaps = 27/354 (7%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T ++   G +VKG V+ ++    ++      + + P   +S  +   P     +G E+  
Sbjct: 27  TLTNFDEGDLVKGTVVKLEHDEVLLDIGFKSEGVIPSRELSIRKDADPSDIVALGDEIEA 86

Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL  + K  R+ ++ K+   +     +    +A +  +  G + ++ K G  +    G+
Sbjct: 87  LVLQKEDKDGRLILSKKRAEYERAWIQVEEKFKAGE--VVTGEVIEVVKGGLILDI--GL 142

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSE 663
           +GF P S + L    +   MY +G  ++ R++      +++  SRR+ L    K  R   
Sbjct: 143 RGFLPASLVDLRR-VKDLDMY-LGTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEI 200

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGY 722
              +  G  + G V  +      V +   G   G +    L+ +H+ H +    V+K G 
Sbjct: 201 LSKLAKGMRLKGTVSSIVDFGAFVDL---GGIDGLVHISELSWNHVNHPS---EVVKVGD 254

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVR 780
           E + ++L +D +   + L  K +  +   +L       +P  S+V G V  I+  G F+ 
Sbjct: 255 EVEVEVLDVDLQRERISLGLKQTTEDPWLKLVES----YPVGSIVDGKVTKIVPFGAFIE 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
               + G    S+         ++   VGQ V+  ++++N +  RI+LS+K + 
Sbjct: 311 LGNNVEGLVHISEMAAKHIDTPAQVVKVGQEVKVKVMEINPDRRRISLSMKAAA 364


>gi|50842265|ref|YP_055492.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
 gi|289426251|ref|ZP_06427997.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
 gi|289427839|ref|ZP_06429545.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
 gi|295130353|ref|YP_003581016.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
 gi|335052226|ref|ZP_08545118.1| 30S ribosomal protein S1 [Propionibacterium sp. 409-HC1]
 gi|335053985|ref|ZP_08546810.1| 30S ribosomal protein S1 [Propionibacterium sp. 434-HC2]
 gi|342212943|ref|ZP_08705668.1| 30S ribosomal protein S1 [Propionibacterium sp. CC003-HC2]
 gi|354606752|ref|ZP_09024722.1| 30S ribosomal protein S1 [Propionibacterium sp. 5_U_42AFAA]
 gi|365962490|ref|YP_004944056.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn31]
 gi|365964734|ref|YP_004946299.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn17]
 gi|365973670|ref|YP_004955229.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn33]
 gi|386023737|ref|YP_005942040.1| 30S ribosomal protein S1 [Propionibacterium acnes 266]
 gi|407935191|ref|YP_006850833.1| 30S ribosomal protein S1 [Propionibacterium acnes C1]
 gi|417929618|ref|ZP_12573002.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182]
 gi|419420987|ref|ZP_13961215.1| 30S ribosomal protein S1 [Propionibacterium acnes PRP-38]
 gi|422385153|ref|ZP_16465288.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3]
 gi|422388231|ref|ZP_16468334.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2]
 gi|422393353|ref|ZP_16473406.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1]
 gi|422396184|ref|ZP_16476215.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1]
 gi|422424231|ref|ZP_16501181.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1]
 gi|422428339|ref|ZP_16505250.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1]
 gi|422431256|ref|ZP_16508135.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2]
 gi|422432942|ref|ZP_16509810.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2]
 gi|422435485|ref|ZP_16512342.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2]
 gi|422443300|ref|ZP_16520098.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1]
 gi|422445462|ref|ZP_16522209.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1]
 gi|422448818|ref|ZP_16525543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3]
 gi|422454691|ref|ZP_16531371.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3]
 gi|422461630|ref|ZP_16538254.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1]
 gi|422474499|ref|ZP_16550963.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1]
 gi|422477823|ref|ZP_16554246.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1]
 gi|422480378|ref|ZP_16556781.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1]
 gi|422482871|ref|ZP_16559260.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1]
 gi|422485652|ref|ZP_16562014.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2]
 gi|422488901|ref|ZP_16565230.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2]
 gi|422490994|ref|ZP_16567309.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1]
 gi|422493049|ref|ZP_16569349.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1]
 gi|422496028|ref|ZP_16572315.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1]
 gi|422498768|ref|ZP_16575040.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3]
 gi|422501060|ref|ZP_16577314.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2]
 gi|422502579|ref|ZP_16578824.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2]
 gi|422506528|ref|ZP_16582751.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2]
 gi|422507862|ref|ZP_16584043.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2]
 gi|422510900|ref|ZP_16587046.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1]
 gi|422513122|ref|ZP_16589245.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2]
 gi|422515996|ref|ZP_16592105.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2]
 gi|422521619|ref|ZP_16597649.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1]
 gi|422527010|ref|ZP_16603000.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1]
 gi|422529451|ref|ZP_16605417.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1]
 gi|422534099|ref|ZP_16610023.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1]
 gi|422537621|ref|ZP_16613509.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1]
 gi|422539707|ref|ZP_16615580.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1]
 gi|422542629|ref|ZP_16618479.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1]
 gi|422545683|ref|ZP_16621513.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1]
 gi|422547568|ref|ZP_16623384.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3]
 gi|422549423|ref|ZP_16625223.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1]
 gi|422552498|ref|ZP_16628289.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3]
 gi|422556547|ref|ZP_16632301.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2]
 gi|422561230|ref|ZP_16636917.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1]
 gi|422563322|ref|ZP_16638999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1]
 gi|422568915|ref|ZP_16644533.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2]
 gi|422569692|ref|ZP_16645299.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1]
 gi|422578941|ref|ZP_16654465.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4]
 gi|50839867|gb|AAT82534.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
 gi|289153416|gb|EFD02131.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
 gi|289158971|gb|EFD07169.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
 gi|291375457|gb|ADD99311.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
 gi|313764712|gb|EFS36076.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1]
 gi|313802151|gb|EFS43383.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2]
 gi|313807266|gb|EFS45753.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2]
 gi|313809772|gb|EFS47493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1]
 gi|313813186|gb|EFS50900.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1]
 gi|313815779|gb|EFS53493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1]
 gi|313818313|gb|EFS56027.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2]
 gi|313820074|gb|EFS57788.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1]
 gi|313823117|gb|EFS60831.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2]
 gi|313825606|gb|EFS63320.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1]
 gi|313827848|gb|EFS65562.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2]
 gi|313830682|gb|EFS68396.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1]
 gi|313833902|gb|EFS71616.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1]
 gi|313838482|gb|EFS76196.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1]
 gi|314915204|gb|EFS79035.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4]
 gi|314918567|gb|EFS82398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1]
 gi|314919829|gb|EFS83660.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3]
 gi|314925498|gb|EFS89329.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3]
 gi|314931844|gb|EFS95675.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1]
 gi|314956000|gb|EFT00398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1]
 gi|314958395|gb|EFT02498.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1]
 gi|314960251|gb|EFT04353.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2]
 gi|314963061|gb|EFT07161.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1]
 gi|314968106|gb|EFT12205.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1]
 gi|314973683|gb|EFT17779.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1]
 gi|314976278|gb|EFT20373.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1]
 gi|314978238|gb|EFT22332.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2]
 gi|314983513|gb|EFT27605.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1]
 gi|314990181|gb|EFT34272.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3]
 gi|315080309|gb|EFT52285.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1]
 gi|315084567|gb|EFT56543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2]
 gi|315085905|gb|EFT57881.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3]
 gi|315088677|gb|EFT60653.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1]
 gi|315096304|gb|EFT68280.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1]
 gi|315098286|gb|EFT70262.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2]
 gi|315101023|gb|EFT72999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1]
 gi|327325939|gb|EGE67729.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2]
 gi|327330637|gb|EGE72383.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1]
 gi|327332188|gb|EGE73925.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3]
 gi|327442810|gb|EGE89464.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2]
 gi|327446180|gb|EGE92834.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2]
 gi|327447838|gb|EGE94492.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1]
 gi|327451032|gb|EGE97686.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3]
 gi|327453616|gb|EGF00271.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2]
 gi|328753065|gb|EGF66681.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1]
 gi|328753719|gb|EGF67335.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1]
 gi|328759190|gb|EGF72806.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2]
 gi|328760564|gb|EGF74132.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1]
 gi|332675193|gb|AEE72009.1| 30S ribosomal protein S1 [Propionibacterium acnes 266]
 gi|333764312|gb|EGL41709.1| 30S ribosomal protein S1 [Propionibacterium sp. 409-HC1]
 gi|333765766|gb|EGL43098.1| 30S ribosomal protein S1 [Propionibacterium sp. 434-HC2]
 gi|340768487|gb|EGR91012.1| 30S ribosomal protein S1 [Propionibacterium sp. CC003-HC2]
 gi|340773741|gb|EGR96233.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182]
 gi|353556867|gb|EHC26236.1| 30S ribosomal protein S1 [Propionibacterium sp. 5_U_42AFAA]
 gi|365739171|gb|AEW83373.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn31]
 gi|365741415|gb|AEW81109.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn17]
 gi|365743669|gb|AEW78866.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn33]
 gi|379977478|gb|EIA10803.1| 30S ribosomal protein S1 [Propionibacterium acnes PRP-38]
 gi|407903772|gb|AFU40602.1| 30S ribosomal protein S1 [Propionibacterium acnes C1]
 gi|456739550|gb|EMF64089.1| 30S ribosomal protein S1 [Propionibacterium acnes FZ1/2/0]
          Length = 498

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 182/397 (45%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G    Q ++ 
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEA 188

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S    +              +  L    I +G 
Sbjct: 189  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LHQLQKGQIRKGV 232

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 233  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSL 291

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      + LH +G IV G++ ++  +G F+ +E+  + GL HVSEL+E
Sbjct: 292  SLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAE 345

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 346  RHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.9 bits (115), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 111/248 (44%), Gaps = 37/248 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R    + ++G+ +   ++ ++K +  + L  R + +    +         Q 
Sbjct: 166  PASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEV-------RQN 218

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+H+   G I  G +S I++   G  V +G  + G VH +EL    +  P    + GQ V
Sbjct: 219  FLHQLQKGQIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPV 275

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         V LSL+++ +                P +   ++  +    IV 
Sbjct: 276  TVEVLDVDMDRE---RVSLSLKATQE---------------DPWQAFARLHQI--GQIVP 315

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +++ ++   +R+
Sbjct: 316  GKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRI 375

Query: 1433 EVTLKTSD 1440
             ++LK ++
Sbjct: 376  SLSLKQAN 383


>gi|350569650|ref|ZP_08938046.1| 30S ribosomal protein S1 [Propionibacterium avidum ATCC 25577]
 gi|348660468|gb|EGY77178.1| 30S ribosomal protein S1 [Propionibacterium avidum ATCC 25577]
          Length = 498

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 182/397 (45%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G    Q ++ 
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEA 188

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S    +              +  L    I +G 
Sbjct: 189  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LHQLQKGQIRKGV 232

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 233  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSL 291

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      + LH +G IV G++ ++  +G F+ +E+  + GL HVSEL+E
Sbjct: 292  SLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAE 345

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 346  RHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.9 bits (115), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382


>gi|336119735|ref|YP_004574512.1| 30S ribosomal protein S1 [Microlunatus phosphovorus NM-1]
 gi|334687524|dbj|BAK37109.1| 30S ribosomal protein S1 [Microlunatus phosphovorus NM-1]
          Length = 488

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 182/406 (44%), Gaps = 53/406 (13%)

Query: 1142 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1191
            P  + + ++GS   F    D +I     G  VTG V KVD +  LL I       + ++ 
Sbjct: 8    PPQVAIDDLGSPEAFLAAIDATIKYFNDGDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKE 67

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +P E+        +G  +    L   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPFEV------VSVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWG 114

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q 
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVG----QE 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S    +  T              L    I 
Sbjct: 169  LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNFLTQ-------------LQKGQIR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +R
Sbjct: 213  KGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G IV G++ ++  +G F+ +E   + GL HVSE
Sbjct: 272  VSLSLKAT-----QEDPWQAFARTHQIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHVSE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
            L+E HV+  E +    + V VKI+ +D E+RRISL +K +    DA
Sbjct: 326  LAERHVEIPEQVVGVNDDVMVKIIDIDLERRRISLSLKQANEGVDA 371



 Score = 46.2 bits (108), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 149/349 (42%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 36  GDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVSVGDEIEALVQQKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGQELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLTQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 262 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHQIGQIVPGKVTKLVPFGAFVRVEEG 316

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+  +       +   V   V   I+D++ E  RI+LSLKQ+
Sbjct: 317 IEGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLERRRISLSLKQA 365


>gi|282854237|ref|ZP_06263574.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
 gi|386071678|ref|YP_005986574.1| 30S ribosomal protein S1 [Propionibacterium acnes ATCC 11828]
 gi|422390898|ref|ZP_16470993.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1]
 gi|422459760|ref|ZP_16536408.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2]
 gi|422464648|ref|ZP_16541255.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1]
 gi|422466302|ref|ZP_16542878.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4]
 gi|422470228|ref|ZP_16546749.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3]
 gi|422564991|ref|ZP_16640642.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2]
 gi|422576182|ref|ZP_16651720.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1]
 gi|282583690|gb|EFB89070.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
 gi|314923224|gb|EFS87055.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1]
 gi|314966991|gb|EFT11090.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2]
 gi|314980945|gb|EFT25039.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3]
 gi|315091676|gb|EFT63652.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4]
 gi|315093089|gb|EFT65065.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1]
 gi|315103138|gb|EFT75114.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2]
 gi|327327811|gb|EGE69587.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1]
 gi|353456044|gb|AER06563.1| 30S ribosomal protein S1 [Propionibacterium acnes ATCC 11828]
          Length = 498

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 182/397 (45%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G    Q ++ 
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEA 188

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S    +              +  L    I +G 
Sbjct: 189  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LHQLQKGQIRKGV 232

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 233  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSL 291

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      + LH +G IV G++ ++  +G F+ +E+  + GL HVSEL+E
Sbjct: 292  SLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAE 345

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 346  RHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 44.7 bits (104), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 111/248 (44%), Gaps = 37/248 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R    + ++G+ +   ++ ++K +  + L  R + +    +         Q 
Sbjct: 166  PASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEV-------RQN 218

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+H+   G I  G +S I++   G  V +G  + G VH +EL    +  P    + GQ V
Sbjct: 219  FLHQLQKGQIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPV 275

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         V LSL+++ +                P +   ++  +    IV 
Sbjct: 276  TVEVLDVDMDRE---RVSLSLKATQE---------------DPWQAFARLHQI--GQIVP 315

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +++ ++   +R+
Sbjct: 316  GKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRI 375

Query: 1433 EVTLKTSD 1440
             ++LK ++
Sbjct: 376  SLSLKQAN 383


>gi|329946785|ref|ZP_08294197.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526596|gb|EGF53609.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 484

 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 187/400 (46%), Gaps = 53/400 (13%)

Query: 1142 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1191
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   ++              ++ L    + 
Sbjct: 169  LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LQTLQKGQVR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  SGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SE
Sbjct: 272  VSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 326  LAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 47.8 bits (112), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 33/357 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+      AS
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPAS 373



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 131/293 (44%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLTIS--RHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + ++  E  ++T S    +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 110  ERAWGTIERIKEEDGVVTGSVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGRE 168

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++  + +QT + +G +  G +S I++   
Sbjct: 169  LEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLQT-LQKGQVRSGVVSSIVNF-- 222

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + G  V  +VL++         V LSL++
Sbjct: 223  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRE---RVSLSLKA 278

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 279  TQE---------------DPWQAFARTHAI--GQVVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G  V  +V+ ++   +R+ ++LK ++      SE
Sbjct: 322  HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPASE 374


>gi|375101674|ref|ZP_09747937.1| ribosomal protein S1 [Saccharomonospora cyanea NA-134]
 gi|374662406|gb|EHR62284.1| ribosomal protein S1 [Saccharomonospora cyanea NA-134]
          Length = 493

 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 183/395 (46%), Gaps = 51/395 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G AV   
Sbjct: 41   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VAVGDAVEAL 94

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 95   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEPVRGTVIEVVKG--GLIL 145

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 146  DIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRRAYLEQ 198

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L+   + +G V ++ + G F+ L   +D  V +S 
Sbjct: 199  TQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 244

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +G
Sbjct: 245  LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIG 299

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G +V VK++ +D 
Sbjct: 300  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDL 358

Query: 1519 EKRRISLGMKSSY--FKNDA--DNLQMSSEEESDE 1549
            E+RRISL +K +   F  DA  D  Q     E DE
Sbjct: 359  ERRRISLSLKQANEGFTPDAEFDPTQYGMAAEYDE 393



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 145/362 (40%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 43  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKEDKE 102

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGF----LP---- 154

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 155 ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKG 214

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 215 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 273

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 274 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 306

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G  +   ++D+    R + LS
Sbjct: 307 TKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLS 366

Query: 938 LK 939
           LK
Sbjct: 367 LK 368



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 151/358 (42%), Gaps = 32/358 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKED 100

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 842
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T DA F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGFTPDAEF 380


>gi|300741419|ref|ZP_07071440.1| ribosomal protein S1 [Rothia dentocariosa M567]
 gi|311113502|ref|YP_003984724.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931]
 gi|300380604|gb|EFJ77166.1| ribosomal protein S1 [Rothia dentocariosa M567]
 gi|310944996|gb|ADP41290.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931]
          Length = 486

 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 189/405 (46%), Gaps = 55/405 (13%)

Query: 1138 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1187
            +S     + +++IG++  F +  D +I     G  V+G V KVD++  LL I       +
Sbjct: 1    MSTNIPQVAINDIGNEEEFLKAVDETIKYFNDGDLVSGQVVKVDHDEVLLDIGYKTEGVI 60

Query: 1188 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1247
             ++   +    +P E+        +G  +   VL+  KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDVDPGEV------VAVGDEIEALVLT--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1248 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            I        I E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------IKENDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
               Q ++ K++E+ +      +V LS R+ L+   S   S               +  L 
Sbjct: 164  ---QQLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSTF-------------LNQLE 204

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
               + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+
Sbjct: 205  KGQVREGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVD 263

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGL 1485
               +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E+  + GL
Sbjct: 264  LDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVED-GIEGL 317

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             H+SEL+  HVD  E +   GE++ VKI+ +D ++RRISL +K +
Sbjct: 318  VHISELAVRHVDLAEQVVSVGEELFVKIIDIDMDRRRISLSLKQA 362



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V +G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   VL 
Sbjct: 203 LEKGQVREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLE 261

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G  
Sbjct: 262 VDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +        +  VG+ +  +I+      RRI+LS 
Sbjct: 319 HISELAVRHVDLAEQVVSVGEELFVKIIDIDMDRRRISLSL 359



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 157/351 (44%), Gaps = 37/351 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G+V+ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 33  GDLVSGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDEIEALVLTKED 92

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKIKE-NDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNQLE 204

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P    + L
Sbjct: 205 KGQVREGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQP-VTVEVL 260

Query: 728 LV-LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
            V LD E  +L L A        Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 261 EVDLDRERVSLSLKA-------TQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 785 LTGFAPRSK-AVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+ AV  +  DL+ +   VG+ +   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAV--RHVDLAEQVVSVGEELFVKIIDIDMDRRRISLSLKQA 362


>gi|19552573|ref|NP_600575.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|62390242|ref|YP_225644.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|21324127|dbj|BAB98752.1| Ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
 gi|41325579|emb|CAF21368.1| 30S RIBOSOMAL PROTEIN S1 [Corynebacterium glutamicum ATCC 13032]
 gi|385143485|emb|CCH24524.1| 30S ribosomal protein S1 [Corynebacterium glutamicum K051]
          Length = 486

 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 185/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G    Q ++ 
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLDPYIG----QELEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 170  KIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LHQLQKGQVRKGV 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLEVDLDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++
Sbjct: 273  SLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQ 326

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 327  RHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLEVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLEVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 405



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 107/248 (43%), Gaps = 37/248 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R      +IG+ +   ++ ++K +  + L  R F +    +           
Sbjct: 147  PASLVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEV-------RSE 199

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  P      G  V
Sbjct: 200  FLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEV 256

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VLE+         V LSL+++ +                P +   +    +   IV 
Sbjct: 257  TVEVLEVDLDRE---RVSLSLKATQE---------------DPWRVFARTH--AVGQIVP 296

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L+  +VE P++   +G+ V  +V+ ++   +R+
Sbjct: 297  GKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRI 356

Query: 1433 EVTLKTSD 1440
             ++LK +D
Sbjct: 357  SLSLKQAD 364


>gi|418245351|ref|ZP_12871758.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 14067]
 gi|354510759|gb|EHE83681.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 14067]
          Length = 486

 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 185/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G    Q ++ 
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLIIDIGLRGFLPASLVEMRRVRDLDPYIG----QELEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 170  KIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LHQLQKGQVRKGV 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++
Sbjct: 273  SLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQ 326

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 327  RHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 405



 Score = 41.2 bits (95), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 107/248 (43%), Gaps = 37/248 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R      +IG+ +   ++ ++K +  + L  R F +    +           
Sbjct: 147  PASLVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEV-------RSE 199

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  P      G  V
Sbjct: 200  FLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEV 256

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         V LSL+++ +                P +   +    +   IV 
Sbjct: 257  TVEVLDVDLDRE---RVSLSLKATQE---------------DPWRVFARTH--AVGQIVP 296

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L+  +VE P++   +G+ V  +V+ ++   +R+
Sbjct: 297  GKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVAVGEEVMVKVIDIDLERRRI 356

Query: 1433 EVTLKTSD 1440
             ++LK +D
Sbjct: 357  SLSLKQAD 364


>gi|387503162|ref|YP_005944391.1| 30S ribosomal protein S1 [Propionibacterium acnes 6609]
 gi|335277207|gb|AEH29112.1| 30S ribosomal protein S1 [Propionibacterium acnes 6609]
          Length = 498

 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 182/397 (45%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G    Q ++ 
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYLG----QEIEA 188

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S    +              +  L    I +G 
Sbjct: 189  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LHQLQKGQIRKGV 232

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 233  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSL 291

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      + LH +G IV G++ ++  +G F+ +E+  + GL HVSEL+E
Sbjct: 292  SLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAE 345

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 346  RHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 47.8 bits (112), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YLGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 44.3 bits (103), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 111/248 (44%), Gaps = 37/248 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R    + ++G+ +   ++ ++K +  + L  R + +    +         Q 
Sbjct: 166  PASLVEMRRVRDLQPYLGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEV-------RQN 218

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+H+   G I  G +S I++   G  V +G  + G VH +EL    +  P    + GQ V
Sbjct: 219  FLHQLQKGQIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPV 275

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         V LSL+++ +                P +   ++  +    IV 
Sbjct: 276  TVEVLDVDMDRE---RVSLSLKATQE---------------DPWQAFARLHQI--GQIVP 315

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +++ ++   +R+
Sbjct: 316  GKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRI 375

Query: 1433 EVTLKTSD 1440
             ++LK ++
Sbjct: 376  SLSLKQAN 383


>gi|320531284|ref|ZP_08032260.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136487|gb|EFW28459.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 484

 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 187/400 (46%), Gaps = 53/400 (13%)

Query: 1142 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1191
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   ++              ++ L    + 
Sbjct: 169  LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LQTLQKGQVR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  SGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SE
Sbjct: 272  VSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 326  LAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 151/349 (43%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 131/293 (44%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLTIS--RHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + ++  E  ++T S    +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 110  ERAWGTIERIKEEDGVVTGSVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGRE 168

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++  + +QT + +G +  G +S I++   
Sbjct: 169  LEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLQT-LQKGQVRSGVVSSIVNF-- 222

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + G  V  +VL++         V LSL++
Sbjct: 223  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRE---RVSLSLKA 278

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 279  TQE---------------DPWQAFARTHAI--GQVVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G  V  +V+ ++   +R+ ++LK ++      SE
Sbjct: 322  HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPTSE 374


>gi|400291413|ref|ZP_10793431.1| 30S ribosomal protein S1 [Actinomyces naeslundii str. Howell 279]
 gi|399903470|gb|EJN86207.1| 30S ribosomal protein S1 [Actinomyces naeslundii str. Howell 279]
          Length = 484

 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 187/400 (46%), Gaps = 53/400 (13%)

Query: 1142 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1191
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   ++              ++ L    + 
Sbjct: 169  LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LQTLQKGQVR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  SGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SE
Sbjct: 272  VSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 326  LAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 47.4 bits (111), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 151/349 (43%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 131/293 (44%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLTIS--RHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + ++  E  ++T S    +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 110  ERAWGTIERIKEEDGVVTGSVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGRE 168

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++  + +QT + +G +  G +S I++   
Sbjct: 169  LEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLQT-LQKGQVRSGVVSSIVNF-- 222

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + G  V  +VL++         V LSL++
Sbjct: 223  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRE---RVSLSLKA 278

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 279  TQE---------------DPWQAFARTHAI--GQVVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G  V  +V+ ++   +R+ ++LK ++      SE
Sbjct: 322  HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPASE 374


>gi|325068715|ref|ZP_08127388.1| 30S ribosomal protein S1 [Actinomyces oris K20]
 gi|326773413|ref|ZP_08232696.1| ribosomal protein S1 [Actinomyces viscosus C505]
 gi|343522613|ref|ZP_08759579.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 175 str. F0384]
 gi|326636643|gb|EGE37546.1| ribosomal protein S1 [Actinomyces viscosus C505]
 gi|343402022|gb|EGV14528.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 175 str. F0384]
          Length = 484

 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 187/400 (46%), Gaps = 53/400 (13%)

Query: 1142 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1191
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   ++              ++ L    + 
Sbjct: 169  LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LQTLQKGQVR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  SGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SE
Sbjct: 272  VSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 326  LAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 33/357 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+      AS
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPAS 373



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 131/293 (44%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLTIS--RHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + ++  E  ++T S    +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 110  ERAWGTIERIKEEDGVVTGSVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGRE 168

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++  + +QT + +G +  G +S I++   
Sbjct: 169  LEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLQT-LQKGQVRSGVVSSIVNF-- 222

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + G  V  +VL++         V LSL++
Sbjct: 223  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRE---RVSLSLKA 278

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 279  TQE---------------DPWQAFARTHAI--GQVVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G  V  +V+ ++   +R+ ++LK ++      SE
Sbjct: 322  HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPASE 374


>gi|86739768|ref|YP_480168.1| 30S ribosomal protein S1 [Frankia sp. CcI3]
 gi|86566630|gb|ABD10439.1| SSU ribosomal protein S1P [Frankia sp. CcI3]
          Length = 492

 Score = 91.3 bits (225), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 195/422 (46%), Gaps = 60/422 (14%)

Query: 1138 LSIKPSMLT----VSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH- 1186
            ++I PS  T    V++IGS   F    D +I     G  V G + KVD +  LL I    
Sbjct: 13   VTISPSPTTPQVAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGIIVKVDRDEVLLDIGYKT 72

Query: 1187 ---LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISD 1243
               + ++   +    +P E+        +G  V   VL   KE K  RL+L   +     
Sbjct: 73   EGVIPSRELSIKHDVDPHEV------VSVGDHVEALVL--QKEDKEGRLILSKKR----- 119

Query: 1244 KTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPL 1303
               + +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P 
Sbjct: 120  AQYERAWGTIEKLKDEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPY 177

Query: 1304 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1363
             G +    ++ K++E+ +      +V LS R+ L+   S   S+              + 
Sbjct: 178  VGRE----LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LA 217

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
             L+   I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL
Sbjct: 218  QLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 276

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNL 1482
             V+   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   +
Sbjct: 277  DVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRVDE-GI 330

Query: 1483 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMS 1542
             GL H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +   N+A  L + 
Sbjct: 331  EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NEATGLAVD 387

Query: 1543 SE 1544
             E
Sbjct: 388  GE 389



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDKE 110

Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKDEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 222

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 938 LK 939
           LK
Sbjct: 375 LK 376



 Score = 41.2 bits (95), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKED 108

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKD-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 220

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA 378


>gi|309789714|ref|ZP_07684294.1| RNA binding S1 domain protein [Oscillochloris trichoides DG-6]
 gi|308228200|gb|EFO81848.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
          Length = 488

 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 10/188 (5%)

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
            T V   G    +++DL   M ++G V ++   G F+ L    D  V +S +SD  +++P 
Sbjct: 88   TPVAEEGGRPRRLKDLQAGMELEGRVTSIALYGIFVDLGVGRDGLVHISEMSDTRIDTPS 147

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS---------EINNLSNLHVGDI 1460
                IG  V  RV SV+P ++R+ +T+++ +     ++         + + LS+L VGD+
Sbjct: 148  DLVQIGDTVTVRVKSVDPDARRISLTMRSQERSEGGRNRNRPKRAEVDRDRLSSLKVGDV 207

Query: 1461 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1520
            V G+I     +G F  I      GL HVSEL+E  V+  E   + G++   K+L++D + 
Sbjct: 208  VEGKITGFAPFGAFADI-GVGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKVLEIDPDG 266

Query: 1521 RRISLGMK 1528
             RISL ++
Sbjct: 267  TRISLSLR 274



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 106/251 (42%), Gaps = 38/251 (15%)

Query: 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ--DGISD----KTVDISNDNM 1253
            PS+L        IG  VT  V S++ + + + L +R  +  +G  +    K  ++  D +
Sbjct: 146  PSDL------VQIGDTVTVRVKSVDPDARRISLTMRSQERSEGGRNRNRPKRAEVDRDRL 199

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
             + +  GD+V G+I+       G    IG    G +H +EL    V  P      G    
Sbjct: 200  SS-LKVGDVVEGKITGFAPF--GAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGDQFN 256

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
             KVLEI     GT  + LSLR ++                      ++++ L P  I++G
Sbjct: 257  FKVLEIDPD--GT-RISLSLRRAM--------------------RSQRMQGLEPGQILEG 293

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V  +   G F+ +    D  V +S LS   V   E    +G  V  +VL V+  SKR+ 
Sbjct: 294  TVSGLAPFGAFVDIGVGRDGLVHISALSSSRVGKVEDVVKVGDKVTVKVLEVDQQSKRIS 353

Query: 1434 VTLKTSDSRTA 1444
            +T++  DS  A
Sbjct: 354  LTMRLDDSEPA 364



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 114/262 (43%), Gaps = 34/262 (12%)

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G +T I  +G FV    G  G    SE+       PS +  +G  V  R+ S  P +RR
Sbjct: 110 EGRVTSIALYGIFVDLGVGRDGLVHISEMSDTRIDTPSDLVQIGDTVTVRVKSVDPDARR 169

Query: 650 INLSFMM-----------KPTR--VSEDDL--VKLGSLVSGVVDVVTPNAVVVYVIAKGY 694
           I+L+              +P R  V  D L  +K+G +V G +    P      +   G 
Sbjct: 170 ISLTMRSQERSEGGRNRNRPKRAEVDRDRLSSLKVGDVVEGKITGFAPFGAFADI---GV 226

Query: 695 SK-GTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL 752
            K G I    LA+        +  +K G +F+ ++L +D + + + LS + ++ +   Q 
Sbjct: 227 GKDGLIHVSELAEG--RVEKPEDAVKVGDQFNFKVLEIDPDGTRISLSLRRAMRSQRMQ- 283

Query: 753 PSDASHIHPNSVVHGYVCNIIETGCFVRF-LGR--LTGFAPRSKAVDGQRADLSKTYYVG 809
                 + P  ++ G V  +   G FV   +GR  L   +  S +  G+  D+ K   VG
Sbjct: 284 -----GLEPGQILEGTVSGLAPFGAFVDIGVGRDGLVHISALSSSRVGKVEDVVK---VG 335

Query: 810 QSVRSNILDVNSETGRITLSLK 831
             V   +L+V+ ++ RI+L+++
Sbjct: 336 DKVTVKVLEVDQQSKRISLTMR 357



 Score = 51.2 bits (121), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 113/272 (41%), Gaps = 41/272 (15%)

Query: 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ-HKKVNARI 377
           L  GM +  RV SI   G+ +       G V I  + +T    +  +D  Q    V  R+
Sbjct: 103 LQAGMELEGRVTSIALYGIFVDLGVGRDGLVHISEMSDT--RIDTPSDLVQIGDTVTVRV 160

Query: 378 LFVDPTSRAVGLTLNPYLL----HNRAPP----------SHVKVGDIYDQSKVVRVDRGL 423
             VDP +R + LT+          NR  P          S +KVGD+  + K+       
Sbjct: 161 KSVDPDARRISLTMRSQERSEGGRNRNRPKRAEVDRDRLSSLKVGDVV-EGKITGF-APF 218

Query: 424 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGI--- 480
           G   DI    V     + +S++AE  V K E   K G     ++L    ++   T I   
Sbjct: 219 GAFADIG---VGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKVL---EIDPDGTRISLS 272

Query: 481 ----LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
               +++   +GL       +PG +++G V  +  FGA V    G   L  +  +S   +
Sbjct: 273 LRRAMRSQRMQGL-------EPGQILEGTVSGLAPFGAFVDIGVGRDGLVHISALSSSRV 325

Query: 537 VKPGKKFKVGAELVFRVLGV--KSKRITVTHK 566
            K     KVG ++  +VL V  +SKRI++T +
Sbjct: 326 GKVEDVVKVGDKVTVKVLEVDQQSKRISLTMR 357



 Score = 48.1 bits (113), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+GK+     FGA      G   L  +  ++E  + KP    KVG +  F+V
Sbjct: 200 SSLKVGDVVEGKITGFAPFGAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKV 259

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L +     RI+++ ++ +   ++  L          I  G ++ +   G FV    G  G
Sbjct: 260 LEIDPDGTRISLSLRRAMRSQRMQGLEPGQ------ILEGTVSGLAPFGAFVDIGVGRDG 313

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
               S L      +   +  VG  V  +++     S+RI+L+  +
Sbjct: 314 LVHISALSSSRVGKVEDVVKVGDKVTVKVLEVDQQSKRISLTMRL 358



 Score = 43.1 bits (100), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 27/214 (12%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           D++ GM ++G+V ++  +G  V    G   L  +  MS+  I  P    ++G  +  RV 
Sbjct: 102 DLQAGMELEGRVTSIALYGIFVDLGVGRDGLVHISEMSDTRIDTPSDLVQIGDTVTVRVK 161

Query: 555 GV--KSKRITVTHK--------KTLVKSKLAILSSYAEATDRL-------ITHGWITKIE 597
            V   ++RI++T +        +   + K A +       DRL       +  G IT   
Sbjct: 162 SVDPDARRISLTMRSQERSEGGRNRNRPKRAEVDR-----DRLSSLKVGDVVEGKITGFA 216

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--M 655
             G F     G  G    SEL      +P     VG     +++   P   RI+LS    
Sbjct: 217 PFGAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGDQFNFKVLEIDPDGTRISLSLRRA 276

Query: 656 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYV 689
           M+  R+     ++ G ++ G V  + P    V +
Sbjct: 277 MRSQRMQG---LEPGQILEGTVSGLAPFGAFVDI 307


>gi|258511670|ref|YP_003185104.1| RNA binding S1 domain-containing protein [Alicyclobacillus
            acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478396|gb|ACV58715.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius subsp.
            acidocaldarius DSM 446]
          Length = 385

 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 167/386 (43%), Gaps = 57/386 (14%)

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISR----HLKAQLFILDSAYEPSELQEFQRRF 1210
            +  +  V  G  VTG V  VD+    + +      H+  Q         PS++       
Sbjct: 8    MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDV------V 61

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
             +G  VT  VL ++ E   + L  R  +   +        + MQ  +  G+ +   I  +
Sbjct: 62   SVGSTVTAQVLKVDMESGHVTLSKRRAEQASA-------WERMQQLLESGEPIEVEIRDV 114

Query: 1271 LSGVGGLVVQIG-----PHLYGRVHFTE-LKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
            + G  GLV  +G     P      HF E L+            +GQ ++ KV+E+     
Sbjct: 115  VKG--GLVADVGVRAFIPASLVDRHFVENLEQF----------KGQKLRAKVIEVDPQKN 162

Query: 1325 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1384
                  LS R+ L+  S   +  L              E+L P  +++G V+ +T  G F
Sbjct: 163  KLI---LSRRAVLEEESEARARKL-------------FEELKPGDVIEGTVQRLTDFGAF 206

Query: 1385 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1444
            + +    D  V +S LS  +V  P +    G  V  RVL V+P + R+ +++K +     
Sbjct: 207  VDVG-GADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAA----L 261

Query: 1445 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
             +           GD+V G ++RV  +G F+ +    L GL HVS++S +HVD    + +
Sbjct: 262  PEPWETYAHEFQPGDVVQGVVRRVVDFGAFVEL-RPGLEGLVHVSQISNEHVDKPSDVLQ 320

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSS 1530
             G++V V++L VD E++RISL M+ S
Sbjct: 321  PGQEVTVRVLSVDPERKRISLSMRDS 346



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 12/251 (4%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G +T ++ HG  V   +G +G     EL   PG  PS +  VG  V  +++     S
Sbjct: 19  VVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTVTAQVLKVDMES 78

Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
             + LS        + + + +L   G  +   +  V    +V  V  + +   ++   H 
Sbjct: 79  GHVTLSKRRAEQASAWERMQQLLESGEPIEVEIRDVVKGGLVADVGVRAFIPASLVDRHF 138

Query: 705 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNS 763
            ++LE     K   K       ++ +D + + L+LS +  L   ++         + P  
Sbjct: 139 VENLEQFKGQKLRAK-------VIEVDPQKNKLILSRRAVLEEESEARARKLFEELKPGD 191

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           V+ G V  + + G FV  +G   G    S+         S+    G  V+  +L V+ E 
Sbjct: 192 VIEGTVQRLTDFGAFVD-VGGADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEA 250

Query: 824 GRITLSLKQSC 834
           GRI+LS+K + 
Sbjct: 251 GRISLSIKAAL 261



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 144/358 (40%), Gaps = 31/358 (8%)

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           + T + V+ G VV G+V AVD  G  V  P G +       +S      P     VG+ +
Sbjct: 8   MLTDAAVREGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTV 67

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVR 604
             +VL V  +   VT  K     + A  +S  E   +L+  G   ++E     K G    
Sbjct: 68  TAQVLKVDMESGHVTLSK-----RRAEQASAWERMQQLLESGEPIEVEIRDVVKGGLVAD 122

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
              GV+ F P S +  D     +     GQ ++ +++   P   ++ LS        SE 
Sbjct: 123 V--GVRAFIPASLV--DRHFVENLEQFKGQKLRAKVIEVDPQKNKLILSRRAVLEEESEA 178

Query: 665 DLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 717
              KL      G ++ G V  +T     V V   G + G +    L+  H+ H +    V
Sbjct: 179 RARKLFEELKPGDVIEGTVQRLTDFGAFVDV---GGADGLVHISELSFSHVNHPS---EV 232

Query: 718 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
           ++ G     ++L +D E+  + LS K +L    +     A    P  VV G V  +++ G
Sbjct: 233 VREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETY---AHEFQPGDVVQGVVRRVVDFG 289

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            FV     L G    S+  +      S     GQ V   +L V+ E  RI+LS++ S 
Sbjct: 290 AFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSS 347



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 157/379 (41%), Gaps = 52/379 (13%)

Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII- 1122
            G +V  E+T +    + +    G+ G I   E++        ++ S   +G TVTA+++ 
Sbjct: 17   GDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVS---VGSTVTAQVLK 73

Query: 1123 --AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWAL 1180
               +S    + K    + S    M  + E G  +  E  DV  G  V     +     +L
Sbjct: 74   VDMESGHVTLSKRRAEQASAWERMQQLLESGEPIEVEIRDVVKGGLVADVGVRAFIPASL 133

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
              + RH     F+         L++F+     G+ +   V+ ++ +K  L L  R     
Sbjct: 134  --VDRH-----FV-------ENLEQFK-----GQKLRAKVIEVDPQKNKLILSRR----A 170

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
            + ++  +     +   +  GD++ G + ++     G  V +G    G VH +EL    V+
Sbjct: 171  VLEEESEARARKLFEELKPGDVIEGTVQRLTDF--GAFVDVG-GADGLVHISELSFSHVN 227

Query: 1301 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1360
             P     EG  VK +VL +         + LS++++L     T +               
Sbjct: 228  HPSEVVREGDRVKVRVLRVDPE---AGRISLSIKAALPEPWETYA--------------- 269

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAG 1420
               +  P  +VQG V+ V   G F+ L   L+  V +S +S+ +V+ P      G+ V  
Sbjct: 270  --HEFQPGDVVQGVVRRVVDFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTV 327

Query: 1421 RVLSVEPLSKRVEVTLKTS 1439
            RVLSV+P  KR+ ++++ S
Sbjct: 328  RVLSVDPERKRISLSMRDS 346



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 154/363 (42%), Gaps = 36/363 (9%)

Query: 221 LYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLP-SFTGFLPRNNLAENSGID----VK 275
           L + L+   V+EG V+T  V +++DHG  +   LP  + G +    L+   G      V 
Sbjct: 5   LREMLTDAAVREGDVVTGEVTAVDDHGVTV--ALPHGYEGHISPQELSAVPGTHPSDVVS 62

Query: 276 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILEN 335
            G  +   V  +D     V LS      +    +  +     LL  G  +   ++ +++ 
Sbjct: 63  VGSTVTAQVLKVDMESGHVTLSKRRAEQASAWERMQQ-----LLESGEPIEVEIRDVVKG 117

Query: 336 GVM--LSFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392
           G++  +    +   + VD   ++N         +  + +K+ A+++ VDP    + L+  
Sbjct: 118 GLVADVGVRAFIPASLVDRHFVENL--------EQFKGQKLRAKVIEVDPQKNKLILSRR 169

Query: 393 PYL-----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
             L        R     +K GD+ + +     D   G  +D+          V IS+++ 
Sbjct: 170 AVLEEESEARARKLFEELKPGDVIEGTVQRLTD--FGAFVDVGGAD----GLVHISELSF 223

Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
             V    +  +EG  V+VR+L      G  +  +KA+  E       + +PG VV+G V 
Sbjct: 224 SHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVR 283

Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTH 565
            V  FGA V+   G++ L  +  +S   + KP    + G E+  RVL V  + KRI+++ 
Sbjct: 284 RVVDFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSM 343

Query: 566 KKT 568
           + +
Sbjct: 344 RDS 346


>gi|225022623|ref|ZP_03711815.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii ATCC
            33806]
 gi|305682064|ref|ZP_07404868.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
 gi|224944531|gb|EEG25740.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii ATCC
            33806]
 gi|305658537|gb|EFM48040.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
          Length = 493

 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 185/401 (46%), Gaps = 53/401 (13%)

Query: 1141 KPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFI- 1193
            K   + +++IGS   F    D +I     G  V G V KVD++  LL I    +  + + 
Sbjct: 5    KAPQVAINDIGSPEEFLAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPVR 64

Query: 1194 ---LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN 1250
               +    +P E+ E      +G  +   VL+  KE K  RL+L   +        + + 
Sbjct: 65   ELSIKHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAW 111

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
              ++    + + V G + +++ G  GL++ IG   +      E++ +   DP  G    Q
Sbjct: 112  GAIEELKEKDEAVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG----Q 165

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
             ++ K++E+ +      +V LS R+ L+   S   S+              +  L    +
Sbjct: 166  QIEAKIIELDKQRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQV 209

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
             +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +
Sbjct: 210  RKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVSVGDEVTVEVLDVDLDRE 268

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
            RV ++LK +      +      +  H VG IV G++ ++  +G F+ +E   + GL H+S
Sbjct: 269  RVSLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHIS 322

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            EL++ HV+  + +  A E   VK++ +D E+RRISL +K +
Sbjct: 323  ELAQRHVEVPDQVVNANEDAMVKVIDIDLERRRISLSLKQA 363



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVSVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  + +  +    +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNANEDAMVKVIDIDLERRRISLSL 360



 Score = 47.8 bits (112), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 164/402 (40%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P+  +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPVRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEAVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H + + SV   G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVSV---GDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +     +     ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNANEDAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405



 Score = 47.0 bits (110), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI ++     D  I  G + K++     +      +G  P  EL +    +P  +  VG 
Sbjct: 23  AIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPVRELSIKHDVDPDEVVEVGD 82

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            +   +++      R+ LS      +    + ++L +    V+G V  V    +++ +  
Sbjct: 83  QIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEAVTGTVIEVVKGGLILDIGL 142

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G + + +++ LD + +N++LS +  L  +  
Sbjct: 143 RGFLPASL--------VEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQS 194

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 195 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVSVG 253

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 254 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRVFARTH----------------------- 289

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-SGSVIQA------ 922
               +G ++ GKV +   FG  V  EE   + G +   +LA   VE    V+ A      
Sbjct: 290 ---AVGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAQRHVEVPDQVVNANEDAMV 344

Query: 923 AILDVAKAERLVDLSLK 939
            ++D+    R + LSLK
Sbjct: 345 KVIDIDLERRRISLSLK 361


>gi|227496060|ref|ZP_03926369.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434]
 gi|226834388|gb|EEH66771.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434]
          Length = 483

 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 188/400 (47%), Gaps = 53/400 (13%)

Query: 1142 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1191
            P+ + V++IGS + +    D ++     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETMKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   ++              ++ L    + 
Sbjct: 169  LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LQTLQKGQVR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +R
Sbjct: 213  TGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SE
Sbjct: 272  VSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L++ HV+  E + + GE+V VK++ +D E+RRISL +K +
Sbjct: 326  LAQRHVEVPEQVVKVGEEVFVKVIDIDLERRRISLSLKQA 365



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 152/349 (43%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERVKEE-DGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 317 IEGLVHISELAQRHVEVPEQVVKVGEEVFVKVIDIDLERRRISLSLKQA 365



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 133/293 (45%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + +V  E  ++T  +   +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 110  ERAWGTIERVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGRE 168

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++  + +QT + +G +  G +S I++   
Sbjct: 169  LEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLQT-LQKGQVRTGVVSSIVNF-- 222

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 223  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRE---RVSLSLKA 278

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 279  TQE---------------DPWQAFARTHAIG--QVVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G+ V  +V+ ++   +R+ ++LK ++      SE
Sbjct: 322  HISELAQRHVEVPEQVVKVGEEVFVKVIDIDLERRRISLSLKQANEGVDPNSE 374


>gi|422452099|ref|ZP_16528800.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2]
 gi|315108213|gb|EFT80189.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2]
          Length = 498

 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 182/397 (45%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G    Q ++ 
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEA 188

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S    +              +  L    I +G 
Sbjct: 189  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LHQLQKGQIRKGV 232

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 233  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSL 291

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      + LH +G IV G++ ++  +G F+ +E+  + GL HVSEL+E
Sbjct: 292  SLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAE 345

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 346  RHVEIPEQVVGVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 48.1 bits (113), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 44.3 bits (103), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 112/251 (44%), Gaps = 37/251 (14%)

Query: 1197 AYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             + P+ L E +R    + ++G+ +   ++ ++K +  + L  R + +    +        
Sbjct: 163  GFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEV------- 215

Query: 1253 MQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
             Q F+H+   G I  G +S I++   G  V +G  + G VH +EL    +  P    + G
Sbjct: 216  RQNFLHQLQKGQIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVG 272

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
            Q V  +VL++         V LSL+++ +                P +   ++  +    
Sbjct: 273  QPVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWQAFARLHQIG--Q 312

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +++ ++   
Sbjct: 313  IVPGKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVGVNDDVMVKIIDIDLDR 372

Query: 1430 KRVEVTLKTSD 1440
            +R+ ++LK ++
Sbjct: 373  RRISLSLKQAN 383


>gi|163841039|ref|YP_001625444.1| 30S ribosomal protein S1 [Renibacterium salmoninarum ATCC 33209]
 gi|162954515|gb|ABY24030.1| SSU ribosomal protein S1P [Renibacterium salmoninarum ATCC 33209]
          Length = 504

 Score = 90.9 bits (224), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 192/409 (46%), Gaps = 53/409 (12%)

Query: 1144 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1193
            ++ +++IGS   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 28   VVAINDIGSAEDFLAAIDATIKYFNDGDLVEGIVVKVDRDEVLLDIGYKTEGVIPSRELS 87

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
            +    +PSE+        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 88   IKHDVDPSEV------VSVGDEVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 134

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++
Sbjct: 135  EKVQEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG----QQIE 188

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
             K++E+ +      +V LS R+ L+    T S   ST        L K+E      +  G
Sbjct: 189  AKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKLE---KGQVRPG 232

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 233  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGREVTVEVLEVDLDRERVS 291

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+
Sbjct: 292  LSLKAT-----QEDPWQTFARTHALGQVVPGRVTKLVPFGAFVRVED-GIEGLVHISELA 345

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1541
              HV+  E +   G+++ VK++ +D E+RRISL +K +    DA++ + 
Sbjct: 346  VRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGLDAESTEF 394



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 227 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGREVTVEVLEVDL 285

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 286 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGRVTKLVPFGAFVRVEDGIEGLVHIS 342

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           EL +        +  VG  +  +++      RRI+LS 
Sbjct: 343 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSL 380



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 54  GDLVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGDEVEALVLTKED 113

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 114 KEGRLILSKKRAQYERAWGDIEKVQE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 169

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 170 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 225

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 226 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGREVTVE 279

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 280 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGRVTKLVPFGAFVRVEDGI 335

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 336 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 383


>gi|427391803|ref|ZP_18886027.1| 30S ribosomal protein S1 [Actinobaculum massiliae ACS-171-V-Col2]
 gi|425731770|gb|EKU94583.1| 30S ribosomal protein S1 [Actinobaculum massiliae ACS-171-V-Col2]
          Length = 497

 Score = 90.9 bits (224), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 183/395 (46%), Gaps = 45/395 (11%)

Query: 1143 SMLTVSEIGSK-LLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDS 1196
            S + V++IG +  L    D +I     G  V G + KVD++  LL I    +  +     
Sbjct: 12   SEIAVNDIGDEEALLAAVDKTIKYFNDGDIVEGTIVKVDHDEVLLDIGYKTEGVI----P 67

Query: 1197 AYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTF 1256
            + E S   +      +    T   L + KE K  RL+L   +        + +   ++  
Sbjct: 68   SKELSIKHDVDPDDVVEVGDTIEALVLQKEDKEGRLLLSKKR-----AQYERAWKQIEKI 122

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
              E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ KV
Sbjct: 123  KEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKV 176

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            +E+ +      +V LS R+ L+   S   +D              +  L    I +G V 
Sbjct: 177  IELDKNRN---NVVLSRRAWLEETQSQVRADF-------------LAGLHKGQIREGVVS 220

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++L
Sbjct: 221  SIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGQKVNVEVLDVDLDRERVSLSL 279

Query: 1437 KTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1495
            K +      +    + +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+  H
Sbjct: 280  KAT-----QEDPWQSFARTHAIGQVVPGKVTKIVPFGAFVRVED-GIEGLVHISELASHH 333

Query: 1496 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            VD  + + + GE + VK++ +D ++RRISL +K +
Sbjct: 334  VDTPDEVVKVGEDIFVKVIDIDLDRRRISLSLKQA 368



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G + +G V ++ +FGA V   GGV  L  +  +S   I  P +   VG ++   VL V  
Sbjct: 212 GQIREGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGQKVNVEVLDVDL 270

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T      +   ++A      +  G +TKI   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQSFARTHAIGQ---VVPGKVTKIVPFGAFVRVEDGIEGLVHIS 327

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           EL       P  +  VG+ +  +++      RRI+LS 
Sbjct: 328 ELASHHVDTPDEVVKVGEDIFVKVIDIDLDRRRISLSL 365



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 38/222 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           +++ LD   +N++LS +  L  +  Q+ +D  + +H   +  G V +I+  G FV  LG 
Sbjct: 175 KVIELDKNRNNVVLSRRAWLEETQSQVRADFLAGLHKGQIREGVVSSIVNFGAFVD-LGG 233

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+         S+   VGQ V   +LDV+ +  R++LSLK +       SF +
Sbjct: 234 VDGLVHVSELSWKHIDHPSEVVTVGQKVNVEVLDVDLDRERVSLSLK-ATQEDPWQSFAR 292

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
            H                           IG V+ GKV +   FG  V  E+   + G +
Sbjct: 293 TH--------------------------AIGQVVPGKVTKIVPFGAFVRVEDG--IEGLV 324

Query: 905 THHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
              +LA   V++       G  I   ++D+    R + LSLK
Sbjct: 325 HISELASHHVDTPDEVVKVGEDIFVKVIDIDLDRRRISLSLK 366


>gi|365827220|ref|ZP_09369084.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 849 str. F0330]
 gi|365265226|gb|EHM94999.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 849 str. F0330]
          Length = 484

 Score = 90.9 bits (224), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 187/400 (46%), Gaps = 53/400 (13%)

Query: 1142 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1191
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERIKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   ++              ++ L    + 
Sbjct: 169  LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LQTLQKGQVR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  SGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SE
Sbjct: 272  VSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 326  LAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLD 264

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 47.8 bits (112), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 33/357 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+      AS
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPAS 373



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 131/293 (44%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLTIS--RHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + ++  E  ++T S    +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 110  ERAWGTIERIKEEDGVVTGSVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGRE 168

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++  + +QT + +G +  G +S I++   
Sbjct: 169  LEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLQT-LQKGQVRSGVVSSIVNF-- 222

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + G  V  +VL++         V LSL++
Sbjct: 223  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRE---RVSLSLKA 278

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 279  TQE---------------DPWQAFARTHAI--GQVVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G  V  +V+ ++   +R+ ++LK ++      SE
Sbjct: 322  HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQANEGVDPASE 374


>gi|422437824|ref|ZP_16514668.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1]
 gi|422524653|ref|ZP_16600662.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2]
 gi|422532624|ref|ZP_16608570.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1]
 gi|313791764|gb|EFS39875.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1]
 gi|315077524|gb|EFT49582.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2]
 gi|327452888|gb|EGE99542.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1]
          Length = 498

 Score = 90.9 bits (224), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 172/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V+G V KVD +  LL I       + ++   +    +P E+       ++G  +   
Sbjct: 53   GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEV------VNVGDEI--E 104

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
             L   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL+V
Sbjct: 105  ALVQQKEDKEGRLILSKKR-----AQYERAWGTIEQIKEEDGVVTGTVIEVVKG--GLIV 157

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 158  DIGLRGFLPASLVEMRRVRDLQPYVG----QEIEAKIIELDKNRN---NVVLSRRAWLEQ 210

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S    +              +  L    I +G V ++ + G F+ L   +D  V +S 
Sbjct: 211  TQSEVRQNF-------------LHQLQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 256

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G+ V   VL V+   +RV ++LK +      +      + LH +G
Sbjct: 257  LSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKAT-----QEDPWQAFARLHQIG 311

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E+  + GL HVSEL+E HV+  E +    + V VKI+ +D 
Sbjct: 312  QIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDL 370

Query: 1519 EKRRISLGMKSS 1530
            ++RRISL +K +
Sbjct: 371  DRRRISLSLKQA 382



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 111/248 (44%), Gaps = 37/248 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R    + ++G+ +   ++ ++K +  + L  R + +    +         Q 
Sbjct: 166  PASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEV-------RQN 218

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+H+   G I  G +S I++   G  V +G  + G VH +EL    +  P    + GQ V
Sbjct: 219  FLHQLQKGQIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPV 275

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         V LSL+++ +                P +   ++  +    IV 
Sbjct: 276  TVEVLDVDMDRE---RVSLSLKATQE---------------DPWQAFARLHQIG--QIVP 315

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +++ ++   +R+
Sbjct: 316  GKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRI 375

Query: 1433 EVTLKTSD 1440
             ++LK ++
Sbjct: 376  SLSLKQAN 383


>gi|145224145|ref|YP_001134823.1| 30S ribosomal protein S1 [Mycobacterium gilvum PYR-GCK]
 gi|315444481|ref|YP_004077360.1| 30S ribosomal protein S1 [Mycobacterium gilvum Spyr1]
 gi|145216631|gb|ABP46035.1| SSU ribosomal protein S1P [Mycobacterium gilvum PYR-GCK]
 gi|315262784|gb|ADT99525.1| SSU ribosomal protein S1P [Mycobacterium gilvum Spyr1]
          Length = 481

 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 187/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L+  
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLTKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LK 939
           LK
Sbjct: 362 LK 363



 Score = 47.8 bits (112), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ   ++ D S   E
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQ---ANEDYSEEFE 374

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            +    K  M  S    G+ +          +W+EGF
Sbjct: 375 AW----KYGMADSYDDQGNYIFPEGFDADTNEWLEGF 407



 Score = 44.3 bits (103), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 116/264 (43%), Gaps = 34/264 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R +   +   
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAW---LEQT 194

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +     +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 195  QSEVRSEFLNQLT-KGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S LS+ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSE 1448
            ++   +R+ ++LK ++   + + E
Sbjct: 351  IDLERRRISLSLKQANEDYSEEFE 374


>gi|119717213|ref|YP_924178.1| 30S ribosomal protein S1 [Nocardioides sp. JS614]
 gi|119537874|gb|ABL82491.1| SSU ribosomal protein S1P [Nocardioides sp. JS614]
          Length = 490

 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 182/397 (45%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 16   VAVNDIGSEADFLAAIDETIKYFNDGDIVAGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 75

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +PSE+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 76   KHDVDPSEV------VAVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 122

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++ 
Sbjct: 123  QVKEEDGVVEGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVG----QTLEA 176

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S       T              L    I +G 
Sbjct: 177  KIIELDKNRN---NVVLSRRAWLEQTQSEVRHGFLTQ-------------LQKGQIRKGV 220

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 221  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMDRERVSL 279

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E
Sbjct: 280  SLKAT-----QEDPWQHFARTHQIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAE 333

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E + +  + V VKI+ +D E+RRISL +K +
Sbjct: 334  RHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQA 370



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 146/354 (41%), Gaps = 29/354 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 41  GDIVAGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVAVGDEVEALVLQKED 100

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E     +  G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEQVKEEDG--VVEGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 157 LVEMRRVRDLQP----YVGQTLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRHGFLTQLQ 212

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 213 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 266

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  Q     A       +V G V  ++  G FVR    + 
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWQHF---ARTHQIGQIVPGKVTKLVPFGAFVRVEEGIE 323

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
           G    S+  +       +   V   V   I+D++ E  RI+LSLKQ+  ++T A
Sbjct: 324 GLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQANETATAA 377



 Score = 44.3 bits (103), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 133/297 (44%), Gaps = 38/297 (12%)

Query: 1165 QRVTGYVYKVDNEWALL--TISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + +V  E  ++  T+   +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 115  ERAWGTIEQVKEEDGVVEGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGQT 173

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G I  G +S I++   
Sbjct: 174  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRHGFLTQLQKGQIRKGVVSSIVNF-- 227

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P      G  V  +VL++         V LSL++
Sbjct: 228  GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMDRE---RVSLSLKA 283

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +H  +   +    IV G V  +   G F+ +   ++  V
Sbjct: 284  TQE---------------DPWQHFARTHQI--GQIVPGKVTKLVPFGAFVRVEEGIEGLV 326

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
             +S L++ +VE PE+   +   V  +++ ++   +R+ ++LK + + TA+ +++ + 
Sbjct: 327  HISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQA-NETATAADVEDF 382


>gi|433449333|ref|ZP_20412197.1| 30S ribosomal protein S1 [Weissella ceti NC36]
 gi|429538847|gb|ELA06885.1| 30S ribosomal protein S1 [Weissella ceti NC36]
          Length = 416

 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 139/270 (51%), Gaps = 27/270 (10%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GDIV   +++++ G  GLVV +   + G V  + ++N  V D L+ Y +GQ ++ K++EI
Sbjct: 113  GDIVEAPVTQVVKG--GLVVDVA-GVRGFVPASMIENRFVQD-LNQY-KGQTIRAKIIEI 167

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
              T      + LS R  L+   S   S +               +L+   +V+G V  +T
Sbjct: 168  DPT---ESRLILSRRDVLNEERSEALSRI-------------FNELAEGDVVEGKVARMT 211

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
            + G FI L   +D  V +S +S   V  P     +G  V  ++L ++P  +R+ +++K +
Sbjct: 212  NFGAFIDLG-GVDGLVHVSEISHDRVSQPSDVLAVGDDVKVKILGLDPEKERISLSIKAT 270

Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
                   +      N   G ++ G +KRV  +G F+ +    + GL HVS+++  HV+N 
Sbjct: 271  QPGPWEAA----AENAPEGTVLEGTVKRVVDFGAFVEV-FPGVEGLVHVSQIAHKHVNNP 325

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
              +  AG+KV VK+L+V+ +K+R+SL +K+
Sbjct: 326  ADVLTAGDKVNVKVLEVNPDKQRLSLSIKA 355



 Score = 68.2 bits (165), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1472
            G+ +  +++ ++P   R+ ++ +   ++ R+ + S I N   L  GD+V G++ R+ ++G
Sbjct: 157  GQTIRAKIIEIDPTESRLILSRRDVLNEERSEALSRIFN--ELAEGDVVEGKVARMTNFG 214

Query: 1473 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             FI +   +  GL HVSE+S D V     +   G+ VKVKIL +D EK RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHDRVSQPSDVLAVGDDVKVKILGLDPEKERISLSIKAT 270



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSC 462
           S    GDI  ++ V +V +G GL++D+         +V  S +    V+ L  +YK G  
Sbjct: 108 SKFNAGDIV-EAPVTQVVKG-GLVVDV----AGVRGFVPASMIENRFVQDL-NQYK-GQT 159

Query: 463 VRVRILGFRHLEGLAT----GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
           +R +I+     E         +L     E L    +++  G VV+GKV  + +FGA +  
Sbjct: 160 IRAKIIEIDPTESRLILSRRDVLNEERSEALSRIFNELAEGDVVEGKVARMTNFGAFIDL 219

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            GGV  L  +  +S   + +P     VG ++  ++LG+  + +RI+++ K T      A 
Sbjct: 220 -GGVDGLVHVSEISHDRVSQPSDVLAVGDDVKVKILGLDPEKERISLSIKATQPGPWEAA 278

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
             +  E T   +  G + ++   G FV  + GV+G    S++       P+ +   G  V
Sbjct: 279 AENAPEGT---VLEGTVKRVVDFGAFVEVFPGVEGLVHVSQIAHKHVNNPADVLTAGDKV 335

Query: 637 KCRIMSSIPASRRINLSF 654
             +++   P  +R++LS 
Sbjct: 336 NVKVLEVNPDKQRLSLSI 353



 Score = 47.8 bits (112), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 153/390 (39%), Gaps = 64/390 (16%)

Query: 574 LAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--VQGFAPRSELGLDPGCEPSSMYH 631
           LA L S AE     +  G +  I+ +   +    G  V+G  P  EL  D   + + +  
Sbjct: 9   LAALDSVAEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPMRELTSDRDADVNDLVK 68

Query: 632 VGQVVKCRIMSSIPASRRINLSFMMKPTRVS-----EDDLVKL--GSLVSGVVDVVTPNA 684
           VG V+   ++S+I  S +   S+++   R+      E+   K   G +V   V  V    
Sbjct: 69  VGDVIDLVVVSTI-GSDKEGGSYLLSKRRLEARRAWEEIASKFNAGDIVEAPVTQVVKGG 127

Query: 685 VVVYVIA-KGYSKGTIPTEHLADHLEH---ATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
           +VV V   +G+   ++        L      T+   +I+          +D   S L+LS
Sbjct: 128 LVVDVAGVRGFVPASMIENRFVQDLNQYKGQTIRAKIIE----------IDPTESRLILS 177

Query: 741 AKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
            +  ++N   ++ L    + +    VV G V  +   G F+  LG + G    S+    +
Sbjct: 178 -RRDVLNEERSEALSRIFNELAEGDVVEGKVARMTNFGAFID-LGGVDGLVHVSEISHDR 235

Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS 858
            +  S    VG  V+  IL ++ E  RI+LS+K +     +A+                 
Sbjct: 236 VSQPSDVLAVGDDVKVKILGLDPEKERISLSIKATQPGPWEAA----------------- 278

Query: 859 SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA-------G 911
              N  E         G+V+EG V    DFG  V  E    V G +   Q+A        
Sbjct: 279 -AENAPE---------GTVLEGTVKRVVDFGAFV--EVFPGVEGLVHVSQIAHKHVNNPA 326

Query: 912 ATVESGSVIQAAILDVAKAERLVDLSLKTV 941
             + +G  +   +L+V   ++ + LS+K +
Sbjct: 327 DVLTAGDKVNVKVLEVNPDKQRLSLSIKAL 356



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 23/182 (12%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            + EGD+V G+++++ +   G  + +G  + G VH +E+ +  VS P      G  VK K+
Sbjct: 197  LAEGDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEISHDRVSQPSDVLAVGDDVKVKI 253

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L +         + LS++++                  PG      E+     +++G VK
Sbjct: 254  LGLDPEKE---RISLSIKAT-----------------QPGPWEAAAENAPEGTVLEGTVK 293

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             V   G F+ +   ++  V +S ++  +V +P      G  V  +VL V P  +R+ +++
Sbjct: 294  RVVDFGAFVEVFPGVEGLVHVSQIAHKHVNNPADVLTAGDKVNVKVLEVNPDKQRLSLSI 353

Query: 1437 KT 1438
            K 
Sbjct: 354  KA 355



 Score = 44.7 bits (104), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 153/360 (42%), Gaps = 43/360 (11%)

Query: 494 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           ++VK G VVKG+V+A+D +   IV   G GV+ + P+  ++           KVG  +  
Sbjct: 16  AEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPMRELTSDRDADVNDLVKVGDVIDL 75

Query: 552 RVLGVKSKRITVTHKKT-----LVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCF 602
            V+       T+   K      L K +L    ++ E   +     I    +T++ K G  
Sbjct: 76  VVVS------TIGSDKEGGSYLLSKRRLEARRAWEEIASKFNAGDIVEAPVTQVVKGGLV 129

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
           V    GV+GF P S +  +   +  + Y  GQ ++ +I+   P   R+ LS         
Sbjct: 130 VDVA-GVRGFVPASMI-ENRFVQDLNQYK-GQTIRAKIIEIDPTESRLILSRRDVLNEER 186

Query: 663 EDDLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK- 715
            + L ++      G +V G V  +T     + +   G   G +   H+++ + H  V + 
Sbjct: 187 SEALSRIFNELAEGDVVEGKVARMTNFGAFIDL---GGVDGLV---HVSE-ISHDRVSQP 239

Query: 716 -SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCN 771
             V+  G +   ++L LD E   + LS     I + Q  P +A+  +    +V+ G V  
Sbjct: 240 SDVLAVGDDVKVKILGLDPEKERISLS-----IKATQPGPWEAAAENAPEGTVLEGTVKR 294

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           +++ G FV     + G    S+       + +     G  V   +L+VN +  R++LS+K
Sbjct: 295 VVDFGAFVEVFPGVEGLVHVSQIAHKHVNNPADVLTAGDKVNVKVLEVNPDKQRLSLSIK 354


>gi|221195607|ref|ZP_03568661.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
 gi|221184373|gb|EEE16766.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
          Length = 441

 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 176/376 (46%), Gaps = 45/376 (11%)

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGK 1214
             D + G  VTG V K++ +  LL I       + A+   +    EPSEL       H+G 
Sbjct: 29   TDFNEGDLVTGTVVKIERDEVLLDIGYKSEGVIPARELSIRKDVEPSEL------VHMGD 82

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
             +   VL   KE K  RLVL   +        + S   ++   + G+ V G + +++ G 
Sbjct: 83   EIEALVL--QKEDKEGRLVLSKKR-----AEYERSWKAVEEKFNAGETVEGEVIEVVKG- 134

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
             GL++ IG   +      +L+ +     LS +  G  ++ +V+E+ R      +V LS R
Sbjct: 135  -GLILDIGLRGFLPASLVDLRRV---KDLSTF-MGTRIEARVIEMDRN---RNNVVLSRR 186

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
              L+        D+       GK       L   M +QG V ++   G F+ L   +D  
Sbjct: 187  VVLEEARKAERQDI------LGK-------LKVGMKLQGTVSSIVEFGAFVDLG-GIDGL 232

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK    +T        +S 
Sbjct: 233  VHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK----QTTEDPWRVLVSK 288

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
              V  IV G + ++ ++G F+ +    + GL H+SE+++ HV     +   G+KV+VK++
Sbjct: 289  FPVDAIVEGTVTKLVTFGAFVDL-GDGVEGLVHISEMAKQHVTAPSQVCTVGDKVQVKVM 347

Query: 1515 KVDKEKRRISLGMKSS 1530
            ++D ++RRISL MK++
Sbjct: 348  EIDLDRRRISLSMKAA 363



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K GM ++G V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +VL 
Sbjct: 204 LKVGMKLQGTVSSIVEFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLD 262

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +RI++  K+T       ++S +       I  G +TK+   G FV   +GV+G  
Sbjct: 263 VDLNRERISLGLKQTTEDPWRVLVSKFPVDA---IVEGTVTKLVTFGAFVDLGDGVEGLV 319

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SE+       PS +  VG  V+ ++M      RRI+LS 
Sbjct: 320 HISEMAKQHVTAPSQVCTVGDKVQVKVMEIDLDRRRISLSM 360



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 143/367 (38%), Gaps = 54/367 (14%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE+    +      +G  P  EL +    EPS + H+G  ++  ++      
Sbjct: 36  LVTGTVVKIERDEVLLDIGYKSEGVIPARELSIRKDVEPSELVHMGDEIEALVLQKEDKE 95

Query: 648 RRINLSFMMKPTRVSE---DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS        S    ++    G  V G V  V    +++ +  +G+   ++     
Sbjct: 96  GRLVLSKKRAEYERSWKAVEEKFNAGETVEGEVIEVVKGGLILDIGLRGFLPASLVDLRR 155

Query: 705 ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNS 763
              L  +T M + I+      +++ +D   +N++LS +  L  + +    D    +    
Sbjct: 156 VKDL--STFMGTRIEA-----RVIEMDRNRNNVVLSRRVVLEEARKAERQDILGKLKVGM 208

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
            + G V +I+E G FV  LG + G    S+         S+   VGQ V   +LDV+   
Sbjct: 209 KLQGTVSSIVEFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNR 267

Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVIEG 880
            RI+L LKQ+                              +E  W   V  F + +++EG
Sbjct: 268 ERISLGLKQT------------------------------TEDPWRVLVSKFPVDAIVEG 297

Query: 881 KVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERL 933
            V +   FG  V   +   V G +   ++A   V +       G  +Q  ++++    R 
Sbjct: 298 TVTKLVTFGAFVDLGDG--VEGLVHISEMAKQHVTAPSQVCTVGDKVQVKVMEIDLDRRR 355

Query: 934 VDLSLKT 940
           + LS+K 
Sbjct: 356 ISLSMKA 362


>gi|256379526|ref|YP_003103186.1| 30S ribosomal protein S1 [Actinosynnema mirum DSM 43827]
 gi|255923829|gb|ACU39340.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827]
          Length = 495

 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 188/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++ P  + +++IG++  F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 11   AVAPKQVAINDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 70

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL   KE K  RL+L   +        + 
Sbjct: 71   SRELSIKHDVDPNEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQYER 117

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 118  AWGTIEALKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE- 174

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 175  ---LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 215

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+  
Sbjct: 216  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDME 274

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ ++   + GL H
Sbjct: 275  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVDE-GIEGLVH 328

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  E + + G+ V VK++ +D ++RRISL +K +
Sbjct: 329  ISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLSLKQA 371



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 155/358 (43%), Gaps = 32/358 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 42  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKED 101

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 102 KEGRLILSKKRAQYERAWGTIEALKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 157

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 158 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 213

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 214 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 267

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D E   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 268 VLDVDMERERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 323

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 842
            G    S+  +       +   VG  V   ++D++ +  RI+LSLKQ+    T D+ F
Sbjct: 324 EGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLSLKQANEGFTVDSEF 381



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 44  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKEDKE 103

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P    
Sbjct: 104 GRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP---- 155

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 156 ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 215

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ E
Sbjct: 216 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDME 274

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 275 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 307

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  +E  +    I+     H ++    V+ G  +   ++D+    R + LS
Sbjct: 308 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLS 367

Query: 938 LK 939
           LK
Sbjct: 368 LK 369



 Score = 44.7 bits (104), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 116/266 (43%), Gaps = 34/266 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +     ++
Sbjct: 144  LILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAW----LEQ 199

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 200  TQSEVRSEFLNQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 256

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++ +                P +   +   
Sbjct: 257  VVEVGQEVTVEVLDVDMERE---RVSLSLKATQE---------------DPWRQFARTHA 298

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +G  V  +V+ 
Sbjct: 299  I--GQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMVKVID 356

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEIN 1450
            ++   +R+ ++LK ++      SE +
Sbjct: 357  IDLDRRRISLSLKQANEGFTVDSEFD 382


>gi|25028013|ref|NP_738067.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
 gi|259506404|ref|ZP_05749306.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
 gi|23493296|dbj|BAC18267.1| putative 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
 gi|259166011|gb|EEW50565.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
          Length = 485

 Score = 90.5 bits (223), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 185/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+        +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEV------VQVGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G    Q ++ 
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG----QELEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 170  KIIELDKNRN---NVVLSRRAFLEQTQSEVRSEF-------------LHQLQKGQVRKGV 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++
Sbjct: 273  SLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQ 326

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 327  RHVEVPDQVVTVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGEEVMVKVIDIDLERRRISLSL 360



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVQVGDQIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSEVRSEFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVTVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405



 Score = 41.2 bits (95), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 111/259 (42%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R      +IG+ +   ++ ++K +  + L  R F +    +
Sbjct: 136  LILDIGLRGFLPASLVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFLEQTQSE 195

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                       F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 196  V-------RSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 245

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 246  PSEVVTVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRVFAR 287

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
                +   IV G V  +   G F+ +   ++  V +S L+  +VE P++   +G+ V  +
Sbjct: 288  TH--AVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVGEEVMVK 345

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK +D
Sbjct: 346  VIDIDLERRRISLSLKQAD 364


>gi|120404330|ref|YP_954159.1| 30S ribosomal protein S1 [Mycobacterium vanbaalenii PYR-1]
 gi|119957148|gb|ABM14153.1| SSU ribosomal protein S1P [Mycobacterium vanbaalenii PYR-1]
          Length = 481

 Score = 90.5 bits (223), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 187/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L+  
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLTKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 145/362 (40%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 150 ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LK 939
           LK
Sbjct: 362 LK 363



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ   ++ D S   E
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQ---ANEDYSEEFE 374

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            +    K  M  S    G+ +          +W+EGF
Sbjct: 375 AW----KYGMADSYDDQGNYIFPEGFDADTNEWLEGF 407



 Score = 43.9 bits (102), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 116/264 (43%), Gaps = 34/264 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R +   +   
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAW---LEQT 194

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +     +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 195  QSEVRSEFLNQLT-KGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S LS+ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSE 1448
            ++   +R+ ++LK ++   + + E
Sbjct: 351  IDLERRRISLSLKQANEDYSEEFE 374


>gi|295426289|ref|ZP_06818949.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
 gi|295064028|gb|EFG54976.1| 30S ribosomal protein S1 [Lactobacillus amylolyticus DSM 11664]
          Length = 401

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDR 258

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
             R+ +++K ++     Q+     +NLH GDI  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  NRISLSIKQTEPSPFEQA----TANLHDGDIFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 14/173 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    KVG ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDN 256

Query: 559 --KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
              RI+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRNRISLSIKQTEP-------SPFEQATANLHDGDIFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S ++
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSNE 362



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            +GK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  MGKTMKLKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGA 213

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            FI +   +  GL H+SE+S  HVD    + + G+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQT 268



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 23/187 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P      GQ VK KV+ I
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGI 254

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                                 +  N   LS     P    +   +L    I +G VK++T
Sbjct: 255  D--------------------NDRNRISLSIKQTEPSPFEQATANLHDGDIFEGEVKSLT 294

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
            + G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P  +R+ +++K +
Sbjct: 295  NFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354

Query: 1440 DSRTASQ 1446
            DS  +S 
Sbjct: 355  DSNASSN 361



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 136/325 (41%), Gaps = 42/325 (12%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA---ILSSYAEATDRLITHG 591
           ++VK G KFK    LV R  G   +        T +K + A   +   Y   T      G
Sbjct: 64  DLVKTGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYNKLQKDYEAGTP---IEG 117

Query: 592 WITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIP 645
            +T   + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P
Sbjct: 118 TVTSSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYMGKTMKLKITEIDP 167

Query: 646 ASRRINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 699
              R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +
Sbjct: 168 NKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLV 224

Query: 700 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
               ++   +H      V+K G +   +++ +DN+ + + LS K +  +  +Q     ++
Sbjct: 225 HISEIS--YKHVDKPSDVLKVGQDVKVKVIGIDNDRNRISLSIKQTEPSPFEQA---TAN 279

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +H   +  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+
Sbjct: 280 LHDGDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLN 339

Query: 819 VNSETGRITLSLK--QSCCSSTDAS 841
           ++    RI+LS+K   S  SS ++S
Sbjct: 340 IDPSDRRISLSIKAADSNASSNESS 364


>gi|404443511|ref|ZP_11008680.1| 30S ribosomal protein S1 [Mycobacterium vaccae ATCC 25954]
 gi|403655333|gb|EJZ10196.1| 30S ribosomal protein S1 [Mycobacterium vaccae ATCC 25954]
          Length = 480

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 187/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            SI    + +++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SITSPQVAINDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L+  
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLTKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LK 939
           LK
Sbjct: 362 LK 363



 Score = 47.8 bits (112), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ   ++ D S   E
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQ---ANEDYSEEFE 374

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            +    K  M  S    G+ +          +W+EGF
Sbjct: 375 AW----KYGMADSYDDQGNYIFPEGFDADTNEWLEGF 407



 Score = 44.3 bits (103), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 116/264 (43%), Gaps = 34/264 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R +   +   
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAW---LEQT 194

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +     +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 195  QSEVRSEFLNQLT-KGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S LS+ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSE 1448
            ++   +R+ ++LK ++   + + E
Sbjct: 351  IDLERRRISLSLKQANEDYSEEFE 374


>gi|309810340|ref|ZP_07704176.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
 gi|308435705|gb|EFP59501.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
          Length = 499

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S   S + V++IGS+  L    D +I     G  V G + KVD +  LL I       + 
Sbjct: 3    STTTSPIAVNDIGSEEELLAAIDATIKHFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVIP 62

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P E+        +G  V   VL   KE K  RL+L   +        + 
Sbjct: 63   SRELSIKHDVDPGEV------VKVGDDVEALVL--QKEDKEGRLILSKKR-----AQYER 109

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    +  +V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 110  AWGTIEQIKEDDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 166

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   +               +++L   
Sbjct: 167  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF-------------LKELQKG 207

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+  
Sbjct: 208  QVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 266

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G +V G++ ++  +G F+ +E+  + GL H
Sbjct: 267  RERVSLSLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVH 320

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  E +   G  + VK++ +D E+RRISL +K +
Sbjct: 321  ISELAERHVELPEQVVTVGSDIFVKVIDIDLERRRISLSLKQA 363



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 153/356 (42%), Gaps = 31/356 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V PG+  KVG ++   VL  + 
Sbjct: 34  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDDVEALVLQKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEQIKE--DDGVVTGTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 150 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 206 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 260 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 315

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
            G    S+  +       +   VG  +   ++D++ E  RI+LSLKQ+      AS
Sbjct: 316 EGLVHISELAERHVELPEQVVTVGSDIFVKVIDIDLERRRISLSLKQANEDGAAAS 371



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 121/269 (44%), Gaps = 40/269 (14%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++GK +   ++ ++K +  + L  R + +     
Sbjct: 136  LILDIGLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLE----- 190

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                 ++   TF+ E   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 191  --QTQSEVRTTFLKELQKGQVRSGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 245

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P    + GQ V  +VL++         V LSL+++ +                P +H  +
Sbjct: 246  PSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWQHFAR 287

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    +V G V  +   G F+ +   ++  V +S L++ +VE PE+   +G  +  +
Sbjct: 288  THAI--GQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVELPEQVVTVGSDIFVK 345

Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
            V+ ++   +R+ ++LK ++   A+ SE +
Sbjct: 346  VIDIDLERRRISLSLKQANEDGAAASEFD 374


>gi|381162416|ref|ZP_09871646.1| ribosomal protein S1 [Saccharomonospora azurea NA-128]
 gi|418461759|ref|ZP_13032823.1| 30S ribosomal protein S1 [Saccharomonospora azurea SZMC 14600]
 gi|359738168|gb|EHK87068.1| 30S ribosomal protein S1 [Saccharomonospora azurea SZMC 14600]
 gi|379254321|gb|EHY88247.1| ribosomal protein S1 [Saccharomonospora azurea NA-128]
          Length = 493

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 137/280 (48%), Gaps = 32/280 (11%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL++ IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R
Sbjct: 141  GGLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRR 193

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + L+   S   S+              +  L+   + +G V ++ + G F+ L   +D  
Sbjct: 194  AYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGL 239

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      + 
Sbjct: 240  VHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FAR 294

Query: 1455 LH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G +V VK+
Sbjct: 295  THAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGSEVMVKV 353

Query: 1514 LKVDKEKRRISLGMKSSY--FKNDA--DNLQMSSEEESDE 1549
            + +D E+RRISL +K +   F  DA  D  Q     E DE
Sbjct: 354  IDIDLERRRISLSLKQANEGFTPDAEFDPTQYGMAAEYDE 393



 Score = 54.3 bits (129), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 146/362 (40%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 43  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKEDKE 102

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGF----LP---- 154

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 155 ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKG 214

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 215 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 273

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 274 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 306

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ GS +   ++D+    R + LS
Sbjct: 307 TKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGSEVMVKVIDIDLERRRISLS 366

Query: 938 LK 939
           LK
Sbjct: 367 LK 368



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKED 100

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 842
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T DA F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGSEVMVKVIDIDLERRRISLSLKQANEGFTPDAEF 380


>gi|383831036|ref|ZP_09986125.1| ribosomal protein S1 [Saccharomonospora xinjiangensis XJ-54]
 gi|383463689|gb|EID55779.1| ribosomal protein S1 [Saccharomonospora xinjiangensis XJ-54]
          Length = 493

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 175/372 (47%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G AV   
Sbjct: 41   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEV------VAVGDAVEAL 94

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 95   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEPVRGTVIEVVKG--GLIL 145

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 146  DIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRRAYLEQ 198

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L+   + +G V ++ + G F+ L   +D  V +S 
Sbjct: 199  TQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 244

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +G
Sbjct: 245  LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FARTHAIG 299

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G +V VK++ +D 
Sbjct: 300  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDL 358

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 359  ERRRISLSLKQA 370



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 145/362 (40%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 43  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKEDKE 102

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 103 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGF----LP---- 154

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 155 ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKG 214

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 215 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 273

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 274 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 306

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G  +   ++D+    R + LS
Sbjct: 307 TKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLS 366

Query: 938 LK 939
           LK
Sbjct: 367 LK 368



 Score = 47.8 bits (112), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 150/358 (41%), Gaps = 32/358 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDAVEALVLQKED 100

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 842
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T D  F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGFTPDTEF 380



 Score = 43.9 bits (102), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 116/266 (43%), Gaps = 34/266 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +     ++
Sbjct: 143  LILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY----LEQ 198

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 199  TQSEVRSEFLNALAKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 255

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++ +                P +   +   
Sbjct: 256  VVEVGQEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRQFARTHA 297

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +G  V  +V+ 
Sbjct: 298  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMVKVID 355

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEIN 1450
            ++   +R+ ++LK ++      +E +
Sbjct: 356  IDLERRRISLSLKQANEGFTPDTEFD 381


>gi|296129804|ref|YP_003637054.1| RNA binding S1 domain-containing protein [Cellulomonas flavigena DSM
            20109]
 gi|296021619|gb|ADG74855.1| RNA binding S1 domain protein [Cellulomonas flavigena DSM 20109]
          Length = 492

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 193/414 (46%), Gaps = 57/414 (13%)

Query: 1141 KPS--MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            KP+   + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 8    KPASPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 67

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P E+        +G AV   VL   KE K  RL+L   +        + 
Sbjct: 68   SRELSIKHDVDPGEV------VKVGDAVEALVL--QKEDKEGRLILSKKR-----AQYER 114

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 115  AWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 171

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+    T S   ST + T          L   
Sbjct: 172  ---IEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT----------LQKG 212

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+  
Sbjct: 213  QVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDFD 271

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H
Sbjct: 272  RERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVH 325

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY--FKNDADNL 1539
            +SEL+  HV+  E + + G+ V VK++ +D E+RRISL +K +   F  ++D+ 
Sbjct: 326  ISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQANEGFDPESDDF 379



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLE 267

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +     P  +  VG  V  +++      RRI+LS 
Sbjct: 325 HISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSL 365



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 152/349 (43%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V PG+  KVG  +   VL  + 
Sbjct: 39  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDAVEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 265 VLEVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 319

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 IEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQA 368


>gi|227495256|ref|ZP_03925572.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436]
 gi|226831708|gb|EEH64091.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436]
          Length = 481

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 182/400 (45%), Gaps = 51/400 (12%)

Query: 1141 KPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194
            +P  + V++IGS+  L    D +I     G  V G V KVD++  LL I    K +  IL
Sbjct: 6    QPEQIAVNDIGSREDLIAAIDATIKYFKEGDIVEGTVVKVDHDEVLLDIG--YKTEGVIL 63

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSI-NKEKKLLRLVLRPFQDGISDKTVDISN--D 1251
                        +    IG  V   VL + +KE +LL          +S K         
Sbjct: 64   SRELSIKHDIAPEDIVKIGDKVEALVLQMEDKEGRLL----------LSKKRAQYERAWG 113

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 114  TIEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 167

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS RS L+   S   ++              +  L    + 
Sbjct: 168  LEAKIIELDKNRN---NVVLSRRSYLEQTQSEVRTNF-------------LHTLQKGQVR 211

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 212  SGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPAEVVEVGDEVTVEVLEVDMSRER 270

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SE
Sbjct: 271  VSLSLKAT-----MEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISE 324

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L++ H++  E + + G+   VKI+ +D E+RRISL +K +
Sbjct: 325  LAQRHIEAPEQVVKVGDGAFVKIIDIDLERRRISLSLKQA 364



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 148/350 (42%), Gaps = 31/350 (8%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
           K G +V+G V+ VD    ++      + +     +S    + P    K+G ++   VL +
Sbjct: 33  KEGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDIAPEDIVKIGDKVEALVLQM 92

Query: 557 KSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
           + K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P
Sbjct: 93  EDKEGRLLLSKKRAQYERAWGTIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLP 148

Query: 615 RS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 666
            S  E+       P    ++G+ ++ +I+      +++  SRR  L       R +    
Sbjct: 149 ASLVEMRRVRDLAP----YIGRELEAKIIELDKNRNNVVLSRRSYLEQTQSEVRTNFLHT 204

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD 725
           ++ G + SGVV  +      V +   G   G +    L+  H++H      V++ G E  
Sbjct: 205 LQKGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPA---EVVEVGDEVT 258

Query: 726 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 783
            ++L +D     + LS K ++ +  Q      +  H    VV G V  ++  G FVR   
Sbjct: 259 VEVLEVDMSRERVSLSLKATMEDPWQAF----ARTHAIGQVVPGKVTKLVPFGAFVRVED 314

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            + G    S+          +   VG      I+D++ E  RI+LSLKQ+
Sbjct: 315 GIEGLVHISELAQRHIEAPEQVVKVGDGAFVKIIDIDLERRRISLSLKQA 364



 Score = 45.8 bits (107), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 129/293 (44%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R      +IG+ 
Sbjct: 109  ERAWGTIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLAPYIGRE 167

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R + +    +T      N    + +G +  G +S I++   
Sbjct: 168  LEAKIIELDKNRNNVVLSRRSYLE----QTQSEVRTNFLHTLQKGQVRSGVVSSIVNF-- 221

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + G  V  +VLE+  +      V LSL++
Sbjct: 222  GAFVDLGG-VDGLVHVSELSWKHIDHPAEVVEVGDEVTVEVLEVDMSRE---RVSLSLKA 277

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            +++                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 278  TME---------------DPWQAFARTHAI--GQVVPGKVTKLVPFGAFVRVEDGIEGLV 320

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  ++E+PE+   +G     +++ ++   +R+ ++LK ++      SE
Sbjct: 321  HISELAQRHIEAPEQVVKVGDGAFVKIIDIDLERRRISLSLKQANEGVDPTSE 373


>gi|375141664|ref|YP_005002313.1| 30S ribosomal protein S1 [Mycobacterium rhodesiae NBB3]
 gi|359822285|gb|AEV75098.1| ribosomal protein S1 [Mycobacterium rhodesiae NBB3]
          Length = 482

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 187/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L+  
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLTKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVNVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 151/380 (39%), Gaps = 46/380 (12%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 644 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP 149

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 150 ----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LTKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVNVGDEVTVEVLD 264

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 933
            GKV +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRR 357

Query: 934 VDLSLKTVFIDRFREANSNR 953
           + LSLK    D   E + ++
Sbjct: 358 ISLSLKQANEDYTEEFDPSK 377



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVNVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 44.3 bits (103), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R +   +   
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAW---LEQT 194

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +     +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 195  QSEVRSEFLNQLT-KGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVNVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S LS+ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|383817893|ref|ZP_09973194.1| 30S ribosomal protein S1 [Mycobacterium phlei RIVM601174]
 gi|383339724|gb|EID18052.1| 30S ribosomal protein S1 [Mycobacterium phlei RIVM601174]
          Length = 477

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 149/376 (39%), Gaps = 46/376 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LKTVFIDRFREANSNR 953
           LK    D   E + ++
Sbjct: 362 LKQANEDYTEEFDPSK 377



 Score = 48.5 bits (114), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407



 Score = 44.7 bits (104), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 111/256 (43%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----Q 193

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 194  TQSEVRSEFLNQLQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S LS+ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|383808184|ref|ZP_09963736.1| 30S ribosomal protein S1 [Rothia aeria F0474]
 gi|383449142|gb|EID52087.1| 30S ribosomal protein S1 [Rothia aeria F0474]
          Length = 484

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 185/405 (45%), Gaps = 55/405 (13%)

Query: 1138 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1191
            +S     + +++IG++  F +  D +I     G  V+G V KVD++  LL I    +  +
Sbjct: 1    MSTNIPQVAINDIGNEEEFLKAVDETIKYFNDGDLVSGQVVKVDHDEVLLDIGYKTEGVI 60

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTG----HVLSINKEKKLLRLVLRPFQDGISDKTVD 1247
                    PS     +     G+ VT       L + KE K  RL+L   +        D
Sbjct: 61   --------PSRELSIKHDVDPGEVVTVGDEIEALVLTKEDKEGRLILSKKRAQYERAWGD 112

Query: 1248 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            I        I E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------IKENDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
               Q ++ K++E+ +      +V LS R+ L+   S   S               +  L 
Sbjct: 164  ---QQLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSTF-------------LNQLE 204

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
               +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+
Sbjct: 205  KGQVRDGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEVLEVD 263

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGL 1485
               +RV ++LK +      +      +  H +G IV G++ ++  +G F+ +E+  + GL
Sbjct: 264  LDRERVSLSLKAT-----QEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVED-GIEGL 317

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             H+SEL+  HVD  + +   GE++ VKI+ +D ++RRISL +K +
Sbjct: 318  VHISELAVRHVDLADQVVSVGEELFVKIIDIDMDRRRISLSLKQA 362



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG ++   VL 
Sbjct: 203 LEKGQVRDGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEVLE 261

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      I  G +TK+   G FVR  +G++G  
Sbjct: 262 VDLDRERVSLSLKATQEDPWQAFARTHALGQ---IVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +        +  VG+ +  +I+      RRI+LS 
Sbjct: 319 HISELAVRHVDLADQVVSVGEELFVKIIDIDMDRRRISLSL 359



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 145/366 (39%), Gaps = 46/366 (12%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            D  +  G + K++     +      +G  P  EL +    +P  +  VG  ++  +++ 
Sbjct: 31  NDGDLVSGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDEIEALVLTK 90

Query: 644 IPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P
Sbjct: 91  EDKEGRLILSKKRAQYERAWGDIEKIKENDGVVTGTVIEVVKGGLILDIGLRGF----LP 146

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
               A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + 
Sbjct: 147 ----ASLVEMRRVRDLAPYIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNQ 202

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+
Sbjct: 203 LEKGQVRDGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEVLE 261

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  R++LSLK +      A F + H L                          G ++
Sbjct: 262 VDLDRERVSLSLKATQEDPWQA-FARTHAL--------------------------GQIV 294

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 933
            GKV +   FG  V  E+  +    I+     H  LA   V  G  +   I+D+    R 
Sbjct: 295 PGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLADQVVSVGEELFVKIIDIDMDRRR 354

Query: 934 VDLSLK 939
           + LSLK
Sbjct: 355 ISLSLK 360



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 159/351 (45%), Gaps = 37/351 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G+V+ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 33  GDLVSGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDEIEALVLTKED 92

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKIKE-NDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNQLE 204

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G +   +
Sbjct: 205 KGQVRDGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQKVTVE 258

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    +V G V  ++  G FVR    
Sbjct: 259 VLEVDLDRERVSLSLK-----ATQEDPWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDG 313

Query: 785 LTGFAPRSK-AVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+ AV  +  DL+ +   VG+ +   I+D++ +  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAV--RHVDLADQVVSVGEELFVKIIDIDMDRRRISLSLKQA 362


>gi|300812171|ref|ZP_07092615.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            PB2003/044-T3-4]
 gi|300496856|gb|EFK31934.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            PB2003/044-T3-4]
          Length = 401

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 32/286 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            D +Q    EG  + G+++  + G  GL+V +G    G +  + + N  VSD L  Y  G+
Sbjct: 102  DKLQKDFEEGKTIEGKVTSSVRG--GLLVDVGTR--GFLPASLISNRFVSD-LKPY-IGK 155

Query: 1311 FVKCKVLEISRTVRGTF--HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
             +K K+ EI          H EL          +  S  +  DV                
Sbjct: 156  AIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDV---------------- 199

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
              V+G V  +T+ G F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++  
Sbjct: 200  --VEGRVSRLTNFGSFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDND 256

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
              R+ +++K ++     Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HV
Sbjct: 257  RHRISLSIKQTEPSPFEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHV 311

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
            SE+S  HVD    +   G+KVKVK+L +D  KRRISL +K +  +N
Sbjct: 312  SEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQADPEN 357



 Score = 73.9 bits (180), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 120/249 (48%), Gaps = 20/249 (8%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKAIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 587
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 588 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDP 341

Query: 646 ASRRINLSF 654
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 63.2 bits (152), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 115/237 (48%), Gaps = 27/237 (11%)

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +IGKA+   +  I+  K   RL+L   +  + ++  + + +N+ + +  GD+V GR+S++
Sbjct: 152  YIGKAIKVKITEIDPAKN--RLILSHKE--LIEEEREQAFENVASQLVVGDVVEGRVSRL 207

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
             +   G  V IG  + G VH +E+    V  P      GQ VK KV+ I         + 
Sbjct: 208  TNF--GSFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDND---RHRIS 261

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            LS++ +                  P    +    L+   +++G VK++T+ G F+ ++  
Sbjct: 262  LSIKQT-----------------EPSPFEQATSSLNEGDVIEGEVKSLTNFGAFVEVADG 304

Query: 1391 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
            +   V +S +S  +V+ P     +G+ V  +VL+++P  +R+ +++K +D   AS S
Sbjct: 305  IQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQADPENASSS 361


>gi|452990290|emb|CCQ98504.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
            [Clostridium ultunense Esp]
          Length = 440

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 179/372 (48%), Gaps = 43/372 (11%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            +V +G  +TG V +++ + AL+ +    +A L I  S      +++ +   H+G  +   
Sbjct: 66   EVQVGDILTGKVSRIEEKQALIDVGFKYEAILPI--SEVSSLHIEKIEDVLHLGDEIEVK 123

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            V   N EK  L +  R      + + +    +N +TF  E  IV   + K     GGLV 
Sbjct: 124  VKKFNPEKDELVVSKRAVAAEKAWEVLSQRFENGETF--ETTIVD--VVK-----GGLVA 174

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             +G  L G +  ++++   V D  S Y +G+ +K KV+E+ R       V LS R+ L+ 
Sbjct: 175  DVG--LRGFIPASQVERNYVED-FSDY-KGKPLKVKVIELDRE---NNRVILSHRAVLEE 227

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
             +     ++             +  L    +V+G V+ +T  G F+ L   +D  + +S 
Sbjct: 228  EAERRKKEV-------------LNRLEAGQVVEGRVERITDFGAFVDLG-GVDGLIHISE 273

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS---RTASQSEINNLSNLH 1456
            LS  +VE       +G +V  +VL V+  ++R+ ++LK +       A+QS       + 
Sbjct: 274  LSWDHVEKATDAVSVGDIVKVKVLKVDRENERISLSLKATQPSPWEKAAQS-------IK 326

Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
             GD+V G ++R+ S+G F+ +    + GL HVS++S   V     + + G++V+VK+L  
Sbjct: 327  PGDVVKGIVRRLPSFGAFVEL-MPGVEGLVHVSQISRKRVGTPGEVLKEGQEVEVKVLDF 385

Query: 1517 DKEKRRISLGMK 1528
            + E +RISL MK
Sbjct: 386  NLEDKRISLSMK 397



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
            L+ L  G +V G+++R+  +G F+ +   +  GL H+SELS DHV+        G+ VKV
Sbjct: 237  LNRLEAGQVVEGRVERITDFGAFVDLGGVD--GLIHISELSWDHVEKATDAVSVGDIVKV 294

Query: 1512 KILKVDKEKRRISLGMKSS 1530
            K+LKVD+E  RISL +K++
Sbjct: 295  KVLKVDRENERISLSLKAT 313



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 155/368 (42%), Gaps = 29/368 (7%)

Query: 477 ATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEI 536
             G  +A++    V    +V+ G ++ GKV  ++   A++      +A+ P+  +S   I
Sbjct: 48  GNGPEEATSVNEAVSAVPEVQVGDILTGKVSRIEEKQALIDVGFKYEAILPISEVSSLHI 107

Query: 537 VKPGKKFKVGAELVFRV--LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
            K      +G E+  +V     +   + V+ +    +    +LS   E  +   T   I 
Sbjct: 108 EKIEDVLHLGDEIEVKVKKFNPEKDELVVSKRAVAAEKAWEVLSQRFENGETFETT--IV 165

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASR 648
            + K G       G++GF P S++  +   E  S Y  G+ +K +++      + +  S 
Sbjct: 166 DVVKGGLVADV--GLRGFIPASQVERNY-VEDFSDYK-GKPLKVKVIELDRENNRVILSH 221

Query: 649 RINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DH 707
           R  L    +  +    + ++ G +V G V+ +T     V +   G   G I    L+ DH
Sbjct: 222 RAVLEEEAERRKKEVLNRLEAGQVVEGRVERITDFGAFVDL---GGVDGLIHISELSWDH 278

Query: 708 LEHATVMKSV---IKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 764
           +E AT   SV   +K      ++L +D E+  + LS K +  +  ++    A  I P  V
Sbjct: 279 VEKATDAVSVGDIVKV-----KVLKVDRENERISLSLKATQPSPWEKA---AQSIKPGDV 330

Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG 824
           V G V  +   G FV  +  + G    S+    +     +    GQ V   +LD N E  
Sbjct: 331 VKGIVRRLPSFGAFVELMPGVEGLVHVSQISRKRVGTPGEVLKEGQEVEVKVLDFNLEDK 390

Query: 825 RITLSLKQ 832
           RI+LS+K+
Sbjct: 391 RISLSMKE 398



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
             + IS+++ + V K       G  V+V++L         +  LKA+           +K
Sbjct: 267 GLIHISELSWDHVEKATDAVSVGDIVKVKVLKVDRENERISLSLKATQPSPWEKAAQSIK 326

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--G 555
           PG VVKG V  + SFGA V+   GV+ L  +  +S   +  PG+  K G E+  +VL   
Sbjct: 327 PGDVVKGIVRRLPSFGAFVELMPGVEGLVHVSQISRKRVGTPGEVLKEGQEVEVKVLDFN 386

Query: 556 VKSKRITVTHKK 567
           ++ KRI+++ K+
Sbjct: 387 LEDKRISLSMKE 398



 Score = 40.4 bits (93), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 1443 TASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETI 1502
            T+    ++ +  + VGDI+ G++ R+E     I +       +  +SE+S  H++ IE +
Sbjct: 55   TSVNEAVSAVPEVQVGDILTGKVSRIEEKQALIDV-GFKYEAILPISEVSSLHIEKIEDV 113

Query: 1503 YRAGEKVKVKILKVDKEK 1520
               G++++VK+ K + EK
Sbjct: 114  LHLGDEIEVKVKKFNPEK 131


>gi|317124795|ref|YP_004098907.1| 30S ribosomal protein S1 [Intrasporangium calvum DSM 43043]
 gi|315588883|gb|ADU48180.1| SSU ribosomal protein S1P [Intrasporangium calvum DSM 43043]
          Length = 493

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 185/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS+  +    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 13   VAINDIGSQEDILAAIDATIKDFNDGDIVEGRIVKVDRDEVLLDIGYKTEGVIPSRELSI 72

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 73   KHDVDPGEI------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 119

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 120  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----IEA 173

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   +               +++L    + QG 
Sbjct: 174  KIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF-------------LKELQKGQVRQGV 217

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 218  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGTDVTVEVLDVDMDRERVSL 276

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +    + +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+E
Sbjct: 277  SLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAE 330

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +    +++ VK++ +D E+RRISL +K +
Sbjct: 331  RHVELPEQVVNVADEIFVKVIDIDLERRRISLSLKQA 367



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 156/363 (42%), Gaps = 31/363 (8%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T  D   G +V+G+++ VD    ++      + + P   +S    V PG+  KVG E+  
Sbjct: 31  TIKDFNDGDIVEGRIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEIVKVGDEVEA 90

Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL  + K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G+
Sbjct: 91  LVLQKEDKEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GL 146

Query: 610 QGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRV 661
           +GF P S  E+      +P    +VG+ ++ +I+      +++  SRR  L       R 
Sbjct: 147 RGFLPASLVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 202

Query: 662 SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 720
           +    ++ G +  GVV  +      V +   G   G +    L+  H++H +    V++ 
Sbjct: 203 TFLKELQKGQVRQGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEV 256

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCF 778
           G +   ++L +D +   + LS K +  +  Q      +  H    VV G V  ++  G F
Sbjct: 257 GTDVTVEVLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAF 312

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           VR    + G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+   S 
Sbjct: 313 VRVEDGIEGLVHISELAERHVELPEQVVNVADEIFVKVIDIDLERRRISLSLKQANDESV 372

Query: 839 DAS 841
             S
Sbjct: 373 PVS 375



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 132/298 (44%), Gaps = 43/298 (14%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 112  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 170

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1272
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G +S I++
Sbjct: 171  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLKELQKGQVRQGVVSSIVN 223

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
               G  V +G  + G VH +EL    +  P    + G  V  +VL++         V LS
Sbjct: 224  F--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGTDVTVEVLDVDMDRE---RVSLS 277

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
            L+++ +                P +H  +   +    +V G V  +   G F+ +   ++
Sbjct: 278  LKATQE---------------DPWQHFARTHAIG--QVVPGKVTKLVPFGAFVRVEDGIE 320

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
              V +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++  +   SE +
Sbjct: 321  GLVHISELAERHVELPEQVVNVADEIFVKVIDIDLERRRISLSLKQANDESVPVSEFD 378


>gi|407983878|ref|ZP_11164515.1| S1 RNA binding domain protein [Mycobacterium hassiacum DSM 44199]
 gi|407374455|gb|EKF23434.1| S1 RNA binding domain protein [Mycobacterium hassiacum DSM 44199]
          Length = 478

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VSVGDKVEALVLT--KEDKDGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE H++  + + + G+ V VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHIEVADQVVQVGDDVMVKVIDIDLERRRISLSLKQA 365



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 145/362 (40%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDKVEALVLTKEDKD 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 150 ASLVEMRRVRDLQPYIGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++A   V+ G  +   ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHIEVADQVVQVGDDVMVKVIDIDLERRRISLS 361

Query: 938 LK 939
           LK
Sbjct: 362 LK 363



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 152/354 (42%), Gaps = 31/354 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG ++   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDKVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    +D
Sbjct: 318 EGLVHISELSERHIEVADQVVQVGDDVMVKVIDIDLERRRISLSLKQANEDYSD 371


>gi|303232665|ref|ZP_07319350.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4]
 gi|302481151|gb|EFL44226.1| 30S ribosomal protein S1 [Atopobium vaginae PB189-T1-4]
          Length = 391

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 177/380 (46%), Gaps = 53/380 (13%)

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGK 1214
             D   G  VTG V K++++  LL I       + A+   +     P +L        +G 
Sbjct: 29   TDFDEGDLVTGTVVKIEHDEVLLDIGFKSEGVIPARELTIRKDVNPEDL------VSLGD 82

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILS 1272
             +   VL   KE K  RL+L       S K  +       ++     G  V G + +++ 
Sbjct: 83   TIEALVL--QKEDKEGRLIL-------SKKRAEYERAWKAVEEKFKAGVNVEGEVIEVVK 133

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            G  GL++ IG   +      +L+ +     LS +  G+ ++ +V+E+ R      +V LS
Sbjct: 134  G--GLILDIGLRGFLPASLVDLRRV---KDLSAF-MGERIESRVIEMDRN---RNNVVLS 184

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             R  L+       S++             ++ L P M ++G V ++   G F+ L   +D
Sbjct: 185  RRVVLEAARKAERSEI-------------LDKLKPGMKLKGTVSSIVDFGAFVDLG-GID 230

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEIN 1450
              + +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK  T D   A      
Sbjct: 231  GLIHISELSWNHVNQPSEVVKVGQEVEVQVLDVDLNRERISLGLKQTTEDPWRAL----- 285

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
             +    +G I+ G++ ++ ++G F+ +    + GL H+SE+S+ HVD    + + G+ V+
Sbjct: 286  -IKKYPIGAIIEGKVTKLVTFGAFVDL-GDGVEGLVHISEMSKQHVDAPAQVCKVGDTVQ 343

Query: 1511 VKILKVDKEKRRISLGMKSS 1530
            VK+++VD E+RRISL MK++
Sbjct: 344  VKVMEVDLERRRISLSMKAA 363



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 6/172 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +KPGM +KG V ++  FGA V   GG+  L  +  +S   + +P +  KVG E+  +VL 
Sbjct: 204 LKPGMKLKGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNQPSEVVKVGQEVEVQVLD 262

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +RI++  K+T      A++  Y       I  G +TK+   G FV   +GV+G  
Sbjct: 263 VDLNRERISLGLKQTTEDPWRALIKKYPIGA---IIEGKVTKLVTFGAFVDLGDGVEGLV 319

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
             SE+       P+ +  VG  V+ ++M      RRI+LS       + +DD
Sbjct: 320 HISEMSKQHVDAPAQVCKVGDTVQVKVMEVDLERRRISLSMKAAAETLGQDD 371



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 147/368 (39%), Gaps = 56/368 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     +      +G  P  EL +     P  +  +G  ++  ++      
Sbjct: 36  LVTGTVVKIEHDEVLLDIGFKSEGVIPARELTIRKDVNPEDLVSLGDTIEALVLQKEDKE 95

Query: 648 RRINLSFMM----KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
            R+ LS       +  +  E+   K G  V G V  V    +++ +  +G+    +P   
Sbjct: 96  GRLILSKKRAEYERAWKAVEEKF-KAGVNVEGEVIEVVKGGLILDIGLRGF----LPA-S 149

Query: 704 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 762
           L D L     + + +    E  +++ +D   +N++LS +  L  + +   S+    + P 
Sbjct: 150 LVD-LRRVKDLSAFMGERIE-SRVIEMDRNRNNVVLSRRVVLEAARKAERSEILDKLKPG 207

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             + G V +I++ G FV  LG + G    S+         S+   VGQ V   +LDV+  
Sbjct: 208 MKLKGTVSSIVDFGAFVD-LGGIDGLIHISELSWNHVNQPSEVVKVGQEVEVQVLDVDLN 266

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVIE 879
             RI+L LKQ+                              +E  W   ++ + IG++IE
Sbjct: 267 RERISLGLKQT------------------------------TEDPWRALIKKYPIGAIIE 296

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAER 932
           GKV +   FG  V   +   V G +   +++   V++       G  +Q  +++V    R
Sbjct: 297 GKVTKLVTFGAFVDLGDG--VEGLVHISEMSKQHVDAPAQVCKVGDTVQVKVMEVDLERR 354

Query: 933 LVDLSLKT 940
            + LS+K 
Sbjct: 355 RISLSMKA 362


>gi|256832461|ref|YP_003161188.1| RNA binding S1 domain-containing protein [Jonesia denitrificans DSM
            20603]
 gi|256685992|gb|ACV08885.1| RNA binding S1 domain protein [Jonesia denitrificans DSM 20603]
          Length = 488

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 188/404 (46%), Gaps = 53/404 (13%)

Query: 1138 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1187
            ++I    + V++IG++  F    D +I     G  V G + KVD +  LL I       +
Sbjct: 1    MTISTPQVAVNDIGTEEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVI 60

Query: 1188 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1247
             ++   +    +P E+       ++G +V   VL   KE K  RL+L   +        +
Sbjct: 61   PSRELSIKHDVDPGEV------VNVGDSVEALVL--QKEDKEGRLILSKKR-----AQYE 107

Query: 1248 ISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD 1307
             +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +
Sbjct: 108  RAWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE 165

Query: 1308 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1367
                ++ K++E+ +      +V LS R+ L+    T S   ST + T          L  
Sbjct: 166  ----IEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT----------LQK 205

Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1427
              +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+ 
Sbjct: 206  GQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDF 264

Query: 1428 LSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLC 1486
              +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL 
Sbjct: 265  DRERVSLSLKAT-----QEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLV 318

Query: 1487 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            H+SEL+  HVD  E +   G+   VK++ +D E+RRISL +K +
Sbjct: 319  HISELAVRHVDLPEQVVNVGDDAFVKVIDIDLERRRISLSLKQA 362



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 203 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 261

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 262 VDFDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +     P  + +VG     +++      RRI+LS 
Sbjct: 319 HISELAVRHVDLPEQVVNVGDDAFVKVIDIDLERRRISLSL 359



 Score = 49.3 bits (116), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 146/375 (38%), Gaps = 46/375 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P  + +VG 
Sbjct: 22  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVNVGD 81

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            V+  ++       R+ LS        +   + K+     +V+G V  V    +++ +  
Sbjct: 82  SVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDIGL 141

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 142 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 193

Query: 751 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S     +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 194 EVRSTFLQTLQKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 252

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
           Q V   +LDV+ +  R++LSLK +       +F + H                       
Sbjct: 253 QEVTVEVLDVDFDRERVSLSLK-ATQEDPWQTFARTH----------------------- 288

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 924
               IG V+ GKV +   FG  V  E+  +    I+     H  L    V  G      +
Sbjct: 289 ---AIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVNVGDDAFVKV 345

Query: 925 LDVAKAERLVDLSLK 939
           +D+    R + LSLK
Sbjct: 346 IDIDLERRRISLSLK 360



 Score = 48.1 bits (113), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 153/350 (43%), Gaps = 35/350 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG  +   VL  + 
Sbjct: 33  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVNVGDSVEALVLQKED 92

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 204

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 259 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 314

Query: 786 TGFAPRSK-AVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+ AV  +  DL  +   VG      ++D++ E  RI+LSLKQ+
Sbjct: 315 EGLVHISELAV--RHVDLPEQVVNVGDDAFVKVIDIDLERRRISLSLKQA 362


>gi|257792261|ref|YP_003182867.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM 2243]
 gi|317490189|ref|ZP_07948677.1| S1 RNA binding domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325833424|ref|ZP_08165873.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
 gi|257476158|gb|ACV56478.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243]
 gi|316910683|gb|EFV32304.1| S1 RNA binding domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325485348|gb|EGC87817.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
          Length = 405

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 148/293 (50%), Gaps = 35/293 (11%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            G++V G + +++ G  GL++ IG   +      +L+ +   D   G +    ++ +V+E+
Sbjct: 121  GEVVTGEVIEVVKG--GLILDIGLRGFLPASLVDLRRVKDLDMYLGTE----IEARVIEM 174

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
             R      +V LS R  L+       +++             +  LS  M ++G V ++ 
Sbjct: 175  DRN---RNNVVLSRRVLLEEGRKNERAEI-------------LAKLSKGMRLKGTVSSIV 218

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
              G F+ L   +D  V +S LS  +V  P +   +G  V   VL V+   +R+ + LK  
Sbjct: 219  DFGAFVDLG-GIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDLQRERISLGLK-- 275

Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
              +T     +  + +  VG IV G++ ++  +G FI +   ++ GL H+SE++  H+D  
Sbjct: 276  --QTTEDPWVKLVESYPVGTIVDGKVTKIVPFGAFIEL-GQSIEGLVHISEMAMRHIDTP 332

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1552
              + +AG++VKVK+++++ E+RRISL MK++     AD   +  E E DE+I+
Sbjct: 333  AQVVKAGDEVKVKVMEINPERRRISLSMKAAA----AD---LGFEIEVDESIQ 378



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   VL V  
Sbjct: 207 GMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDL 265

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           + +RI++  K+T     + ++ SY   T   I  G +TKI   G F+     ++G    S
Sbjct: 266 QRERISLGLKQTTEDPWVKLVESYPVGT---IVDGKVTKIVPFGAFIELGQSIEGLVHIS 322

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           E+ +     P+ +   G  VK ++M   P  RRI+LS 
Sbjct: 323 EMAMRHIDTPAQVVKAGDEVKVKVMEINPERRRISLSM 360



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 74/371 (19%), Positives = 150/371 (40%), Gaps = 54/371 (14%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     V      +G  P  EL +    +PS +  +G+ ++  ++      
Sbjct: 36  LVDGTVVKIEHDEVLVDIGFKSEGVIPSRELSIRKDADPSDIVELGEKIEALVLQKEDKD 95

Query: 648 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            R+ LS     +     RV E    K G +V+G V  V    +++ +  +G+   ++   
Sbjct: 96  GRLILSKKRAEYERAWIRVEEK--FKAGEVVTGEVIEVVKGGLILDIGLRGFLPASLVDL 153

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIH 760
                L+        +  G E + +++ +D   +N++LS +  L    +   ++  + + 
Sbjct: 154 RRVKDLD--------MYLGTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILAKLS 205

Query: 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820
               + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+
Sbjct: 206 KGMRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVD 264

Query: 821 SETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEG 880
            +  RI+L LKQ+                                +K VE + +G++++G
Sbjct: 265 LQRERISLGLKQTTEDPW---------------------------VKLVESYPVGTIVDG 297

Query: 881 KVHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERL 933
           KV +   FG  +   +   + G +   ++A          V++G  ++  ++++    R 
Sbjct: 298 KVTKIVPFGAFIELGQS--IEGLVHISEMAMRHIDTPAQVVKAGDEVKVKVMEINPERRR 355

Query: 934 VDLSLKTVFID 944
           + LS+K    D
Sbjct: 356 ISLSMKAAAAD 366


>gi|417931599|ref|ZP_12574964.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182B-JCVI]
 gi|340775542|gb|EGR97595.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182B-JCVI]
          Length = 498

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 181/397 (45%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G    Q ++ 
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEA 188

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S    +              +  L    I +G 
Sbjct: 189  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQNF-------------LHQLQKGQIRKGV 232

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 233  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSL 291

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      + LH +G IV G++ ++  +G F+ +E+  + GL HVSEL+E
Sbjct: 292  SLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAE 345

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +    +   VKI+ +D ++RRISL +K +
Sbjct: 346  RHVEIPEQVVSVNDDAMVKIIDIDLDRRRISLSLKQA 382



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLHQLQ 224

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   V       I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDAMVKIIDIDLDRRRISLSLKQA 382



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 110/248 (44%), Gaps = 37/248 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R    + ++G+ +   ++ ++K +  + L  R + +    +         Q 
Sbjct: 166  PASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEV-------RQN 218

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+H+   G I  G +S I++   G  V +G  + G VH +EL    +  P    + GQ V
Sbjct: 219  FLHQLQKGQIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPV 275

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         V LSL+++ +                P +   ++  +    IV 
Sbjct: 276  TVEVLDVDMDRE---RVSLSLKATQE---------------DPWQAFARLHQI--GQIVP 315

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L++ +VE PE+   +      +++ ++   +R+
Sbjct: 316  GKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDAMVKIIDIDLDRRRI 375

Query: 1433 EVTLKTSD 1440
             ++LK ++
Sbjct: 376  SLSLKQAN 383


>gi|111221225|ref|YP_712019.1| 30S ribosomal protein S1 [Frankia alni ACN14a]
 gi|111148757|emb|CAJ60433.1| 30S ribosomal protein S1 [Frankia alni ACN14a]
          Length = 518

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 190/411 (46%), Gaps = 56/411 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 49   VAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSI 108

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 109  KHDVDPHEV------VSVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 155

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 156  KLKDEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEA 209

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L+   I +G 
Sbjct: 210  KIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LAQLAKGQIRKGV 253

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 254  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSL 312

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      Q      +  H +G +V G++ ++  +G F+ ++   + GL H+SEL+E
Sbjct: 313  SLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRVDE-GIEGLVHISELAE 366

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSE 1544
             HV+  E +   G+++ VK++ +D ++RRISL +K +   N+A  L +  E
Sbjct: 367  RHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NEASGLAVDGE 414



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 76  IVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDKE 135

Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 136 GRLILSKKRAQYERAWGTIEKLKDEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 190

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 191 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 247

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 248 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 306

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 307 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 339

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 340 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 399

Query: 938 LK 939
           LK
Sbjct: 400 LK 401



 Score = 40.8 bits (94), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 149/352 (42%), Gaps = 31/352 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 74  GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKED 133

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 134 KEGRLILSKKRAQYERAWGTIEKLKD-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 189

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 190 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 245

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 246 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 299

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 300 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 355

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S
Sbjct: 356 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEAS 407


>gi|433630724|ref|YP_007264352.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070010]
 gi|433634681|ref|YP_007268308.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070017]
 gi|432162317|emb|CCK59693.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070010]
 gi|432166274|emb|CCK63767.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070017]
          Length = 481

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              + +L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNNLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  TIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.5 bits (114), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 50/364 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  +++   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 TIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 936 LSLK 939
           LSLK
Sbjct: 360 LSLK 363



 Score = 46.2 bits (108), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 197

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
                  +N+Q    +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 198  VRSEFLNNLQ----KGTIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|422518357|ref|ZP_16594425.1| 30S ribosomal protein S1 [Propionibacterium acnes HL074PA1]
 gi|313772539|gb|EFS38505.1| 30S ribosomal protein S1 [Propionibacterium acnes HL074PA1]
          Length = 498

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 181/397 (45%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V ++GS   F    D +I     G  V+G V KVD +  LL I       + ++   +
Sbjct: 28   VAVDDLGSPEAFLAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI 87

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+       ++G  +    L   KE K  RL+L   +        + +   ++
Sbjct: 88   KHDVDPFEV------VNVGDEI--EALVQQKEDKEGRLILSKKR-----AQYERAWGTIE 134

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL+V IG   +      E++ +    P  G    Q ++ 
Sbjct: 135  QIKEEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVG----QEIEA 188

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V L  R+ L+   S    +              +  L    I +G 
Sbjct: 189  KIIELDKNRN---NVVLPRRAWLEQTQSEVRQNF-------------LHQLQKGQIRKGV 232

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 233  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSL 291

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      + LH +G IV G++ ++  +G F+ +E+  + GL HVSEL+E
Sbjct: 292  SLKAT-----QEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVED-GIEGLVHVSELAE 345

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +    + V VKI+ +D ++RRISL +K +
Sbjct: 346  RHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    V P +   VG E+   V   + 
Sbjct: 53  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVNVGDEIEALVQQKED 112

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 113 KEGRLILSKKRAQYERAWGTIEQIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 168

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++   RR  L       R +    ++
Sbjct: 169 LVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLPRRAWLEQTQSEVRQNFLHQLQ 224

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H + +  V +P     ++
Sbjct: 225 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV--EV 279

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           L +D +   + LS K     + Q+ P  A + +H    +V G V  ++  G FVR    +
Sbjct: 280 LDVDMDRERVSLSLK-----ATQEDPWQAFARLHQIGQIVPGKVTKLVPFGAFVRVEDGI 334

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   V   V   I+D++ +  RI+LSLKQ+
Sbjct: 335 EGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRISLSLKQA 382



 Score = 44.7 bits (104), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 111/248 (44%), Gaps = 37/248 (14%)

Query: 1200 PSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT 1255
            P+ L E +R    + ++G+ +   ++ ++K +  + L  R + +    +         Q 
Sbjct: 166  PASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLPRRAWLEQTQSEV-------RQN 218

Query: 1256 FIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            F+H+   G I  G +S I++   G  V +G  + G VH +EL    +  P    + GQ V
Sbjct: 219  FLHQLQKGQIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPV 275

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
              +VL++         V LSL+++ +                P +   ++  +    IV 
Sbjct: 276  TVEVLDVDMDRE---RVSLSLKATQE---------------DPWQAFARLHQIG--QIVP 315

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +++ ++   +R+
Sbjct: 316  GKVTKLVPFGAFVRVEDGIEGLVHVSELAERHVEIPEQVVSVNDDVMVKIIDIDLDRRRI 375

Query: 1433 EVTLKTSD 1440
             ++LK ++
Sbjct: 376  SLSLKQAN 383


>gi|15608768|ref|NP_216146.1| 30S ribosomal protein S1 RpsA [Mycobacterium tuberculosis H37Rv]
 gi|15841085|ref|NP_336122.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
 gi|148661425|ref|YP_001282948.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|148822837|ref|YP_001287591.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis F11]
 gi|167968417|ref|ZP_02550694.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|253799332|ref|YP_003032333.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 1435]
 gi|254231831|ref|ZP_04925158.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
 gi|254364480|ref|ZP_04980526.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
            Haarlem]
 gi|254550636|ref|ZP_05141083.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis '98-R604
            INH-RIF-EM']
 gi|289443082|ref|ZP_06432826.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
 gi|289447238|ref|ZP_06436982.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
 gi|289569675|ref|ZP_06449902.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
 gi|289574297|ref|ZP_06454524.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
 gi|289745933|ref|ZP_06505311.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
 gi|289750175|ref|ZP_06509553.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
 gi|289753717|ref|ZP_06513095.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
 gi|289757732|ref|ZP_06517110.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
 gi|289761778|ref|ZP_06521156.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
 gi|294996579|ref|ZP_06802270.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 210]
 gi|297634183|ref|ZP_06951963.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 4207]
 gi|297731170|ref|ZP_06960288.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN R506]
 gi|298525126|ref|ZP_07012535.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis 94_M4241A]
 gi|306784360|ref|ZP_07422682.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
 gi|306788728|ref|ZP_07427050.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
 gi|306793065|ref|ZP_07431367.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
 gi|306797447|ref|ZP_07435749.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
 gi|307084210|ref|ZP_07493323.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
 gi|313658502|ref|ZP_07815382.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN V2475]
 gi|339631686|ref|YP_004723328.1| 30S ribosomal protein S1 [Mycobacterium africanum GM041182]
 gi|375296577|ref|YP_005100844.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207]
 gi|385991029|ref|YP_005909327.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5180]
 gi|385994631|ref|YP_005912929.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5079]
 gi|392386301|ref|YP_005307930.1| rpsA [Mycobacterium tuberculosis UT205]
 gi|392432788|ref|YP_006473832.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
 gi|397673484|ref|YP_006515019.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv]
 gi|422812616|ref|ZP_16861000.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A]
 gi|424803967|ref|ZP_18229398.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148]
 gi|424947350|ref|ZP_18363046.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis NCGM2209]
 gi|6226090|sp|O06147.1|RS1_MYCTU RecName: Full=30S ribosomal protein S1
 gi|13881299|gb|AAK45936.1| ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
 gi|124600890|gb|EAY59900.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
 gi|134149994|gb|EBA42039.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
            Haarlem]
 gi|148505577|gb|ABQ73386.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
 gi|148721364|gb|ABR05989.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis F11]
 gi|253320835|gb|ACT25438.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 1435]
 gi|289416001|gb|EFD13241.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
 gi|289420196|gb|EFD17397.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
 gi|289538728|gb|EFD43306.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
 gi|289543429|gb|EFD47077.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
 gi|289686461|gb|EFD53949.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
 gi|289690762|gb|EFD58191.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
 gi|289694304|gb|EFD61733.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
 gi|289709284|gb|EFD73300.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
 gi|289713296|gb|EFD77308.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
 gi|298494920|gb|EFI30214.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis 94_M4241A]
 gi|308330908|gb|EFP19759.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
 gi|308334743|gb|EFP23594.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
 gi|308338520|gb|EFP27371.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
 gi|308342191|gb|EFP31042.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
 gi|308366155|gb|EFP55006.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
 gi|323719890|gb|EGB29003.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A]
 gi|326903243|gb|EGE50176.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148]
 gi|328459082|gb|AEB04505.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207]
 gi|339294585|gb|AEJ46696.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5079]
 gi|339298222|gb|AEJ50332.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5180]
 gi|339331042|emb|CCC26714.1| putative ribosomal protein S1 RPSA [Mycobacterium africanum GM041182]
 gi|358231865|dbj|GAA45357.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis NCGM2209]
 gi|378544852|emb|CCE37127.1| rpsA [Mycobacterium tuberculosis UT205]
 gi|379027853|dbj|BAL65586.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis str. Erdman =
            ATCC 35801]
 gi|392054197|gb|AFM49755.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
 gi|395138389|gb|AFN49548.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv]
 gi|440581096|emb|CCG11499.1| putative RIBOSOMAL protein S1 RPSA [Mycobacterium tuberculosis
            7199-99]
 gi|444895138|emb|CCP44394.1| 30S ribosomal protein S1 RpsA [Mycobacterium tuberculosis H37Rv]
          Length = 481

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              + +L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNNLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  TIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.5 bits (114), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 50/364 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  +++   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 TIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 936 LSLK 939
           LSLK
Sbjct: 360 LSLK 363



 Score = 46.2 bits (108), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 197

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
                  +N+Q    +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 198  VRSEFLNNLQ----KGTIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|433641768|ref|YP_007287527.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070008]
 gi|432158316|emb|CCK55607.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140070008]
          Length = 481

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              + +L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNNLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  TIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.5 bits (114), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 50/364 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  +++   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 TIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 936 LSLK 939
           LSLK
Sbjct: 360 LSLK 363



 Score = 46.2 bits (108), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 197

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
                  +N+Q    +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 198  VRSEFLNNLQ----KGTIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|403737731|ref|ZP_10950459.1| 30S ribosomal protein S1 [Austwickia chelonae NBRC 105200]
 gi|403191843|dbj|GAB77229.1| 30S ribosomal protein S1 [Austwickia chelonae NBRC 105200]
          Length = 485

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 185/403 (45%), Gaps = 56/403 (13%)

Query: 1145 LTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            + +++IGS+  L    D +I     G  V G + KVD +  LL I    +  +       
Sbjct: 10   IAINDIGSEEDLLAAIDATIKHFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVI------- 62

Query: 1199 EPSELQEFQRRFHIGKAVTG----HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
             PS     +     G+ VT       L + KE K  RL+L   +        + +   ++
Sbjct: 63   -PSRELSIKHDVDPGEVVTVGDEVEALVLQKEDKEGRLILSKKR-----AQYERAWGTIE 116

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 117  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----IEA 170

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   +               +++L    +  G 
Sbjct: 171  KIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF-------------LKELQKGQVRTGQ 214

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 215  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSL 273

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +    + +  H +G +V G++ ++  +G F+ +++  + GL H+SEL+E
Sbjct: 274  SLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGAFVRVDD-GIEGLVHISELAE 327

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
             HV+  E +   G  + VK++ +D E+RRISL +K +   NDA
Sbjct: 328  RHVELPEQVVTVGTDIFVKVIDIDLERRRISLSLKQA---NDA 367



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 6/162 (3%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           +++ G V  G+V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL
Sbjct: 204 ELQKGQVRTGQVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 262

Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
            V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G 
Sbjct: 263 DVDMDRERVSLSLKATQEDPWQHFARTHAIGQ---VVPGKVTKLVPFGAFVRVDDGIEGL 319

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              SEL       P  +  VG  +  +++      RRI+LS 
Sbjct: 320 VHISELAERHVELPEQVVTVGTDIFVKVIDIDLERRRISLSL 361



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 155/362 (42%), Gaps = 35/362 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 35  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDEVEALVLQKED 94

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 150

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 151 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELQ 206

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + +G V  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRTGQVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 260

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 261 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAFVRVDDGI 316

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG  +   ++D++ E  RI+LSLKQ    + DA+    
Sbjct: 317 EGLVHISELAERHVELPEQVVTVGTDIFVKVIDIDLERRRISLSLKQ----ANDAAVATN 372

Query: 846 HF 847
            F
Sbjct: 373 EF 374



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 135/298 (45%), Gaps = 43/298 (14%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 109  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 167

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1272
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G++S I++
Sbjct: 168  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLKELQKGQVRTGQVSSIVN 220

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
               G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LS
Sbjct: 221  F--GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLS 274

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
            L+++ +                P +H  +   +    +V G V  +   G F+ +   ++
Sbjct: 275  LKATQE---------------DPWQHFARTHAIG--QVVPGKVTKLVPFGAFVRVDDGIE 317

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
              V +S L++ +VE PE+   +G  +  +V+ ++   +R+ ++LK ++    + +E +
Sbjct: 318  GLVHISELAERHVELPEQVVTVGTDIFVKVIDIDLERRRISLSLKQANDAAVATNEFD 375


>gi|147816462|emb|CAN64048.1| hypothetical protein VITISV_019942 [Vitis vinifera]
          Length = 378

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 5/77 (6%)

Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            DV S  + EITEIKP EL+LK GIGFHGR+HITEV D+  NV+EN F N +IGQTV  RI
Sbjct: 191  DVNS--ETEITEIKPFELKLKLGIGFHGRVHITEVCDE--NVIENPFGNLRIGQTVFGRI 246

Query: 1122 IAKSNKPDMK-KSFLWE 1137
            +AK+NK +   K+  WE
Sbjct: 247  VAKANKSENNGKNHQWE 263


>gi|385998404|ref|YP_005916702.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CTRI-2]
 gi|344219450|gb|AEN00081.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CTRI-2]
          Length = 481

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              + +L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNNLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  TIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 50/364 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  +++   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 TIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 936 LSLK 939
           LSLK
Sbjct: 360 LSLK 363



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 197

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
                  +N+Q    +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 198  VRSEFLNNLQ----KGTIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|313123536|ref|YP_004033795.1| ssu ribosomal protein s1p [Lactobacillus delbrueckii subsp.
            bulgaricus ND02]
 gi|422845529|ref|ZP_16892239.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis DSM
            20072]
 gi|312280099|gb|ADQ60818.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
            bulgaricus ND02]
 gi|325684297|gb|EGD26470.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. lactis DSM
            20072]
          Length = 401

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 32/286 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            D +Q    EG  + G+++  + G  GL+V +G    G +  + + N  VSD L  Y  G+
Sbjct: 102  DKLQKDFEEGKTIEGKVTSSVRG--GLLVDVGTR--GFLPASLISNRFVSD-LKPY-IGK 155

Query: 1311 FVKCKVLEISRTVRGTF--HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
             +K K+ EI          H EL          +  S  +  DV                
Sbjct: 156  TIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDV---------------- 199

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
              V+G V  +T+ G F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++  
Sbjct: 200  --VEGRVSRLTNFGSFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDND 256

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
              R+ +++K ++     Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HV
Sbjct: 257  RHRISLSIKQTEPSPFEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHV 311

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
            SE+S  HVD    +   G+KVKVK+L +D  KRRISL +K +  +N
Sbjct: 312  SEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQADPEN 357



 Score = 73.9 bits (180), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 120/249 (48%), Gaps = 20/249 (8%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 587
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 588 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDP 341

Query: 646 ASRRINLSF 654
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 61.6 bits (148), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 23/197 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            +N+ + +  GD+V GR+S++ +   G  V IG  + G VH +E+    V  P      GQ
Sbjct: 188  ENVASQLVVGDVVEGRVSRLTNF--GSFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQ 244

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
             VK KV+ I         + LS++ +                  P    +    L+   +
Sbjct: 245  DVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATSSLNEGDV 284

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            ++G VK++T+ G F+ ++  +   V +S +S  +V+ P     +G+ V  +VL+++P  +
Sbjct: 285  IEGEVKSLTNFGAFVEVADGIQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKR 344

Query: 1431 RVEVTLKTSDSRTASQS 1447
            R+ +++K +D   AS S
Sbjct: 345  RISLSIKQADPENASSS 361



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 140/365 (38%), Gaps = 53/365 (14%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R +   D          +G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTFKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 779
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  +   G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFV 214

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
           + G +   +++   V+        G  ++  +L++  ++R + LS+K    +    +N  
Sbjct: 305 IQGLVHVSEISYKHVDKPSDVLTVGQKVKVKVLNIDPSKRRISLSIKQADPENASSSNDR 364

Query: 953 RQAQK 957
            +A++
Sbjct: 365 PRARR 369


>gi|300871842|ref|YP_003786715.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000]
 gi|300689543|gb|ADK32214.1| 30S ribosomal protein S1 [Brachyspira pilosicoli 95/1000]
          Length = 556

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 15/345 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S++K G +V+GKV  ++ FGA +Q   G+     +P+MS  +I+ P      G E  F+V
Sbjct: 189 SNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQV 248

Query: 554 LGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           L V K KR      K L               D  I  G +T ++K G FV  Y GV+G 
Sbjct: 249 LSVDKEKRKVDLGIKQLEGDTWYKFVEEYHVGD--IIKGEVTTVKKFGAFVNVYEGVEGL 306

Query: 613 APRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 668
              S+L  +     P+    VG  ++C+I+      R++ L        P   +E D   
Sbjct: 307 IHVSDLSWNSHVNNPNDFVKVGSYLECKILDMNVPERKLTLGLKQVKDNPWDSAERDFPV 366

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
             S+   V  +    A  V+ +  G  +G        D + +   +K  IK   E + ++
Sbjct: 367 KSSVKCKVKRIFKDFA--VFELPNGL-EGICDISDF-DWMNNTVNIKDYIKENEEVEMVI 422

Query: 729 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           + +D +   + LS K++  +  +    D +H H  S+V+G V  II++G  V     L G
Sbjct: 423 MSIDRDKQRIKLSYKHTKESPWRVF--DKAHPH-GSIVNGTVKAIIDSGVIVSLENDLEG 479

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           +   S+    +   L     VG+S    + +VN    RI+LS ++
Sbjct: 480 YMHISQIDLPKGETLESVLKVGESYPFVVREVNQVKRRISLSRRE 524



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 95/170 (55%), Gaps = 6/170 (3%)

Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
            E + +L    IV+G VKN+   G FI L+  LD  + + N+S   + +P+     G+   
Sbjct: 186  EYLSNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERK 245

Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
             +VLSV+   ++V++ +K  +  T  +     +   HVGDI+ G++  V+ +G F+ +  
Sbjct: 246  FQVLSVDKEKRKVDLGIKQLEGDTWYKF----VEEYHVGDIIKGEVTTVKKFGAFVNV-Y 300

Query: 1480 TNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
              + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  EGVEGLIHVSDLSWNSHVNNPNDFVKVGSYLECKILDMNVPERKLTLGLK 350



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 1441 SRTASQSEINN------LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
            SR   Q E  N      LSNL  GDIV G++K +E +G FI +    L G   +  +S  
Sbjct: 171  SRRVLQEETQNKVIEEYLSNLKEGDIVEGKVKNIEKFGAFIQL-TEGLDGFLAIPNMSWA 229

Query: 1495 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             + N + I   GE+ K ++L VDKEKR++ LG+K
Sbjct: 230  KIINPKNIITKGEERKFQVLSVDKEKRKVDLGIK 263



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 162/430 (37%), Gaps = 71/430 (16%)

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            +  G I + +    F+ F   V+G   R+E   +P             VK   + ++   
Sbjct: 31   VVSGKIVQFDDTDVFIDFNYKVEGKINRNEFDKEP-------------VKGEEIEAVIKG 77

Query: 648  RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGTIPTEHLA- 705
            +  N  +++   R  E D  K   L+   V   TP N VV   I  G++   +       
Sbjct: 78   QDNNKGYVILSKR--EIDKRKAQDLIEDAVKNATPINGVVKEAIKGGFTVSIMGHSAFCP 135

Query: 706  -DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 762
               ++ +  +K     G EF Q  ++D + +  ++ ++  L    Q   +    S++   
Sbjct: 136  FSQIDISRGIKEADYIGKEF-QFKIIDRKGNKDIVVSRRVLQEETQNKVIEEYLSNLKEG 194

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             +V G V NI + G F++    L GF         +  +       G+  +  +L V+ E
Sbjct: 195  DIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKE 254

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
              ++ L +KQ                LE             +  K+VE + +G +I+G+V
Sbjct: 255  KRKVDLGIKQ----------------LE-----------GDTWYKFVEEYHVGDIIKGEV 287

Query: 883  HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
                 FG  V+  E      H     + +H       V+ GS ++  ILD+   ER + L
Sbjct: 288  TTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGSYLECKILDMNVPERKLTL 347

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
             LK V               K      A +D  V  +V   V+ + +++ V  LP  N  
Sbjct: 348  GLKQV---------------KDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELP--NGL 390

Query: 997  IGYASVSDYN 1006
             G   +SD++
Sbjct: 391  EGICDISDFD 400



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 140/311 (45%), Gaps = 41/311 (13%)

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI---HEGDIVGGRISKILSGVG 1275
             VLS++KEK+ + L ++  +            D    F+   H GDI+ G ++ +     
Sbjct: 247  QVLSVDKEKRKVDLGIKQLE-----------GDTWYKFVEEYHVGDIIKGEVTTVKKF-- 293

Query: 1276 GLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            G  V +   + G +H ++L  N  V++P      G +++CK+L+++   R    + L L+
Sbjct: 294  GAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGSYLECKILDMNVPER---KLTLGLK 350

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
               D    +   D         K     +D +   +  G ++ +     F  ++  +   
Sbjct: 351  QVKDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNG-LEGICDISDFDWMNNTV--- 406

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
                N+ D   E+ E E  I        +S++   +R++++ K +     S   + + ++
Sbjct: 407  ----NIKDYIKENEEVEMVI--------MSIDRDKQRIKLSYKHT---KESPWRVFDKAH 451

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
             H G IV G +K +   G+ +++EN +L G  H+S++     + +E++ + GE     + 
Sbjct: 452  PH-GSIVNGTVKAIIDSGVIVSLEN-DLEGYMHISQIDLPKGETLESVLKVGESYPFVVR 509

Query: 1515 KVDKEKRRISL 1525
            +V++ KRRISL
Sbjct: 510  EVNQVKRRISL 520


>gi|31792816|ref|NP_855309.1| 30S ribosomal protein S1 [Mycobacterium bovis AF2122/97]
 gi|121637537|ref|YP_977760.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Pasteur
            1173P2]
 gi|224990012|ref|YP_002644699.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
 gi|378771371|ref|YP_005171104.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Mexico]
 gi|449063688|ref|YP_007430771.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Korea 1168P]
 gi|31618406|emb|CAD96324.1| PROBABLE RIBOSOMAL PROTEIN S1 RPSA [Mycobacterium bovis AF2122/97]
 gi|121493184|emb|CAL71655.1| Probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|224773125|dbj|BAH25931.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
 gi|341601555|emb|CCC64228.1| probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str.
            Moreau RDJ]
 gi|356593692|gb|AET18921.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Mexico]
 gi|449032196|gb|AGE67623.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Korea 1168P]
          Length = 481

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              + +L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNNLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  TIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 48.5 bits (114), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 47.4 bits (111), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 145/364 (39%), Gaps = 50/364 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  +++   
Sbjct: 150 ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 TIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 936 LSLK 939
           LSLK
Sbjct: 360 LSLK 363



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 197

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
                  +N+Q    +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 198  VRSEFLNNLQ----KGTIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|326332716|ref|ZP_08198978.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
 gi|325949497|gb|EGD41575.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
          Length = 493

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 171/372 (45%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +PSE+ E      +G  V   
Sbjct: 42   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVE------VGDKVEAL 95

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 96   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEQVKEEDGVVEGAVIEVVKG--GLIL 146

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 147  DIGLRGFLPASLVEMRRVRDLQPYVG----QTLEAKIIELDKNRN---NVVLSRRAWLEQ 199

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S       T              L    I +G V ++ + G F+ L   +D  V +S 
Sbjct: 200  TQSEVRHGFLTQ-------------LQKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 245

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +    + +  H +G
Sbjct: 246  LSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKAT-----QEDPWQHFARTHQIG 300

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + +  + V VKI+ +D 
Sbjct: 301  QIVPGKVTKLVPFGSFVRVEE-GIEGLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDL 359

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 360  ERRRISLSLKQA 371



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 147/355 (41%), Gaps = 31/355 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 42  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVEVGDKVEALVLQKED 101

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E     +  G + ++ K G  +    G++GF P S
Sbjct: 102 KEGRLILSKKRAQYERAWGTIEQVKEEDG--VVEGAVIEVVKGGLILDI--GLRGFLPAS 157

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VGQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 158 LVEMRRVRDLQP----YVGQTLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRHGFLTQLQ 213

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 214 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 267

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  Q     A       +V G V  ++  G FVR    + 
Sbjct: 268 VLDVDMDRERVSLSLKATQEDPWQHF---ARTHQIGQIVPGKVTKLVPFGSFVRVEEGIE 324

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS--CCSSTD 839
           G    S+  +       +   V   V   I+D++ E  RI+LSLKQ+    +STD
Sbjct: 325 GLVHISELAERHVEIPEQVVQVNDDVMVKIIDIDLERRRISLSLKQANETVTSTD 379



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 113/261 (43%), Gaps = 34/261 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +     ++
Sbjct: 144  LILDIGLRGFLPASLVEMRRVRDLQPYVGQTLEAKIIELDKNRNNVVLSRRAW----LEQ 199

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T         T + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 200  TQSEVRHGFLTQLQKGQIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 256

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 257  VVTVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWQHFARTHQ 298

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +++ 
Sbjct: 299  I--GQIVPGKVTKLVPFGSFVRVEEGIEGLVHISELAERHVEIPEQVVQVNDDVMVKIID 356

Query: 1425 VEPLSKRVEVTLKTSDSRTAS 1445
            ++   +R+ ++LK ++    S
Sbjct: 357  IDLERRRISLSLKQANETVTS 377


>gi|431807379|ref|YP_007234277.1| 30S ribosomal protein S1 [Brachyspira pilosicoli P43/6/78]
 gi|434382057|ref|YP_006703840.1| 30S ribosomal protein S1 [Brachyspira pilosicoli WesB]
 gi|404430706|emb|CCG56752.1| 30S ribosomal protein S1 [Brachyspira pilosicoli WesB]
 gi|430780738|gb|AGA66022.1| 30S ribosomal protein S1 [Brachyspira pilosicoli P43/6/78]
          Length = 556

 Score = 89.7 bits (221), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 15/345 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S++K G +V+GKV  ++ FGA +Q   G+     +P+MS  +I+ P      G E  F+V
Sbjct: 189 SNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQV 248

Query: 554 LGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           L V K KR      K L               D  I  G +T ++K G FV  Y GV+G 
Sbjct: 249 LSVDKEKRKVDLGIKQLEGDTWYKFVEEYHVGD--IIKGEVTTVKKFGAFVNVYEGVEGL 306

Query: 613 APRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 668
              S+L  +     P+    VG  ++C+I+      R++ L        P   +E D   
Sbjct: 307 IHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLKQVKDNPWDSAERDFPV 366

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
             S+   V  +    A  V+ +  G  +G        D + +   +K  IK   E + ++
Sbjct: 367 KSSVKCKVKRIFKDFA--VFELPNGL-EGICDISDF-DWMNNTVNIKDYIKENEEVEMVI 422

Query: 729 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           + +D +   + LS K++  +  +    D +H H  S+V+G V  II++G  V     L G
Sbjct: 423 MSIDRDKQRIKLSYKHTKESPWRVF--DKAHPH-GSIVNGTVKAIIDSGVIVSLENDLEG 479

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           +   S+    +   L     VG+S    + +VN    RI+LS ++
Sbjct: 480 YMHISQIDLPKGETLESVLKVGESYPFVVREVNQVKRRISLSRRE 524



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 95/170 (55%), Gaps = 6/170 (3%)

Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
            E + +L    IV+G VKN+   G FI L+  LD  + + N+S   + +P+     G+   
Sbjct: 186  EYLSNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERK 245

Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
             +VLSV+   ++V++ +K  +  T  +     +   HVGDI+ G++  V+ +G F+ +  
Sbjct: 246  FQVLSVDKEKRKVDLGIKQLEGDTWYKF----VEEYHVGDIIKGEVTTVKKFGAFVNV-Y 300

Query: 1480 TNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
              + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  EGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLK 350



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 1441 SRTASQSEINN------LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
            SR   Q E  N      LSNL  GDIV G++K +E +G FI +    L G   +  +S  
Sbjct: 171  SRRVLQEETQNKVIEEYLSNLKEGDIVEGKVKNIEKFGAFIQL-TEGLDGFLAIPNMSWA 229

Query: 1495 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             + N + I   GE+ K ++L VDKEKR++ LG+K
Sbjct: 230  KIINPKNIITKGEERKFQVLSVDKEKRKVDLGIK 263



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 90/430 (20%), Positives = 162/430 (37%), Gaps = 71/430 (16%)

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            +  G I + +    F+ F   V+G   R+E   +P             VK   + ++   
Sbjct: 31   VVSGKIVQFDDTDVFIDFNYKVEGKINRNEFDKEP-------------VKGEEIEAVIKG 77

Query: 648  RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGTIPTEHLA- 705
            +  N  +++   R  E D  K   L+   V   TP N VV   I  G++   +       
Sbjct: 78   QDNNKGYVILSKR--EIDKRKAQDLIEDAVKNATPINGVVKEAIKGGFTVSIMGHSAFCP 135

Query: 706  -DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 762
               ++ +  +K     G EF Q  ++D + +  ++ ++  L    Q   +    S++   
Sbjct: 136  FSQIDISRGIKEADYIGKEF-QFKIIDRKGNKDIVVSRRVLQEETQNKVIEEYLSNLKEG 194

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             +V G V NI + G F++    L GF         +  +       G+  +  +L V+ E
Sbjct: 195  DIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKE 254

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
              ++ L +KQ                LE             +  K+VE + +G +I+G+V
Sbjct: 255  KRKVDLGIKQ----------------LE-----------GDTWYKFVEEYHVGDIIKGEV 287

Query: 883  HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
                 FG  V+  E      H     + +H       V+ G+ ++  ILD+   ER + L
Sbjct: 288  TTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTL 347

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
             LK V               K      A +D  V  +V   V+ + +++ V  LP  N  
Sbjct: 348  GLKQV---------------KDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELP--NGL 390

Query: 997  IGYASVSDYN 1006
             G   +SD++
Sbjct: 391  EGICDISDFD 400



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 140/311 (45%), Gaps = 41/311 (13%)

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI---HEGDIVGGRISKILSGVG 1275
             VLS++KEK+ + L ++  +            D    F+   H GDI+ G ++ +     
Sbjct: 247  QVLSVDKEKRKVDLGIKQLE-----------GDTWYKFVEEYHVGDIIKGEVTTVKKF-- 293

Query: 1276 GLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            G  V +   + G +H ++L  N  V++P      G +++CK+L+++   R    + L L+
Sbjct: 294  GAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPER---KLTLGLK 350

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
               D    +   D         K     +D +   +  G ++ +     F  ++  +   
Sbjct: 351  QVKDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNG-LEGICDISDFDWMNNTV--- 406

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
                N+ D   E+ E E  I        +S++   +R++++ K +     S   + + ++
Sbjct: 407  ----NIKDYIKENEEVEMVI--------MSIDRDKQRIKLSYKHT---KESPWRVFDKAH 451

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
             H G IV G +K +   G+ +++EN +L G  H+S++     + +E++ + GE     + 
Sbjct: 452  PH-GSIVNGTVKAIIDSGVIVSLEN-DLEGYMHISQIDLPKGETLESVLKVGESYPFVVR 509

Query: 1515 KVDKEKRRISL 1525
            +V++ KRRISL
Sbjct: 510  EVNQVKRRISL 520


>gi|444305869|ref|ZP_21141645.1| 30S ribosomal protein S1 [Arthrobacter sp. SJCon]
 gi|443481791|gb|ELT44710.1| 30S ribosomal protein S1 [Arthrobacter sp. SJCon]
          Length = 491

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 191/409 (46%), Gaps = 53/409 (12%)

Query: 1144 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1193
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
            +    +P E+        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGEV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG----QQIE 173

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
             K++E+ +      +V LS R+ L+    T S   ST        L K+E      +  G
Sbjct: 174  AKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKLE---KGQVRPG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+
Sbjct: 277  LSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1541
              HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 331  VRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVSVGDQVEALVLTKE 97

Query: 645 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 759
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 934
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 935 DLSLK 939
            LSLK
Sbjct: 362 SLSLK 366



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           EL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 47.4 bits (111), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG+   VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVSVGDQVEALVLTKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|118472813|ref|YP_888124.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|399988146|ref|YP_006568496.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|441210769|ref|ZP_20974767.1| 30S ribosomal protein S1 [Mycobacterium smegmatis MKD8]
 gi|118174100|gb|ABK74996.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|399232708|gb|AFP40201.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
 gi|440626699|gb|ELQ88527.1| 30S ribosomal protein S1 [Mycobacterium smegmatis MKD8]
          Length = 479

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 149/376 (39%), Gaps = 46/376 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LKTVFIDRFREANSNR 953
           LK    D   E + ++
Sbjct: 362 LKQANEDYTEEFDPSK 377



 Score = 48.5 bits (114), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407



 Score = 44.3 bits (103), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 111/256 (43%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----Q 193

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 194  TQSEVRSEFLNQLQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S LS+ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|340626635|ref|YP_004745087.1| putative ribosomal protein S1 RPSA [Mycobacterium canettii CIPT
            140010059]
 gi|433626722|ref|YP_007260351.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140060008]
 gi|340004825|emb|CCC43970.1| putative ribosomal protein S1 RPSA [Mycobacterium canettii CIPT
            140010059]
 gi|432154328|emb|CCK51560.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
            140060008]
          Length = 481

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              + +L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNNLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 50/364 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  +++   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 936 LSLK 939
           LSLK
Sbjct: 360 LSLK 363



 Score = 45.8 bits (107), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 197

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
                  +N+Q    +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 198  VRSEFLNNLQ----KGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|340359951|ref|ZP_08682422.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 448 str. F0400]
 gi|339883718|gb|EGQ73550.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 448 str. F0400]
          Length = 484

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 188/401 (46%), Gaps = 55/401 (13%)

Query: 1142 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1191
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +P E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERVKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
            ++ K++E+ +      +V LS R+ L+   S   +S L T              L    I
Sbjct: 169  LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRTSFLQT--------------LQKGQI 211

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
              G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +
Sbjct: 212  RTGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRE 270

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
            RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+S
Sbjct: 271  RVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHIS 324

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            EL++ HV+  E + + G++V VK++ +D ++RRISL +K +
Sbjct: 325  ELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQA 365



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G +  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQIRTGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 264

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSL 362



 Score = 47.4 bits (111), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 151/349 (43%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERVKEE-DGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R S    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRTSFLQTLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQIRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 262 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 316

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+          +   VG  V   ++D++ +  RI+LSLKQ+
Sbjct: 317 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQA 365



 Score = 46.6 bits (109), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 143/369 (38%), Gaps = 60/369 (16%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G + K+++    +      +G     EL +    +P  +  VG  ++  ++      
Sbjct: 38  IVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSVGDEIEALVLQKEDKE 97

Query: 648 RRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 699
            R+ LS              RV E+D V  GS++      V    +++ +  +G+    +
Sbjct: 98  GRLLLSKKRAQYERAWGTIERVKEEDGVVTGSVIE-----VVKGGLILDIGLRGF----L 148

Query: 700 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQL-PSDAS 757
           P    A  +E   V       G E + +++ LD   +N++LS +  L  +  ++  S   
Sbjct: 149 P----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRTSFLQ 204

Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
            +    +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L
Sbjct: 205 TLQKGQIRTGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 263

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
           DV+ +  R++LSLK +      A F + H                           IG V
Sbjct: 264 DVDFDRERVSLSLKATQEDPWQA-FARTH--------------------------AIGQV 296

Query: 878 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKA 930
           + GKV +   FG  V  E+   + G +   +LA   VE        G  +   ++D+   
Sbjct: 297 VPGKVTKLVPFGAFVRVEDG--IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLD 354

Query: 931 ERLVDLSLK 939
            R + LSLK
Sbjct: 355 RRRISLSLK 363



 Score = 45.4 bits (106), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 131/293 (44%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLTIS--RHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + +V  E  ++T S    +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 110  ERAWGTIERVKEEDGVVTGSVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGRE 168

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++    +QT + +G I  G +S I++   
Sbjct: 169  LEAKIIELDKNRNNVVLSRRAY---LEQTQSEVRTSFLQT-LQKGQIRTGVVSSIVNF-- 222

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 223  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRE---RVSLSLKA 278

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 279  TQE---------------DPWQAFARTHAI--GQVVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G  V  +V+ ++   +R+ ++LK ++      SE
Sbjct: 322  HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQANEGVDPNSE 374


>gi|404421594|ref|ZP_11003308.1| 30S ribosomal protein S1 [Mycobacterium fortuitum subsp. fortuitum
            DSM 46621]
 gi|403658822|gb|EJZ13520.1| 30S ribosomal protein S1 [Mycobacterium fortuitum subsp. fortuitum
            DSM 46621]
          Length = 479

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 145/362 (40%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 150 ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LK 939
           LK
Sbjct: 362 LK 363



 Score = 48.5 bits (114), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 44.3 bits (103), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 111/256 (43%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----Q 193

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 194  TQSEVRSEFLNQLQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S LS+ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|336441302|gb|AEI54876.1| 30S ribosomal protein S1 [Mycobacterium franklinii]
          Length = 481

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ R      +V LS R+ L+   S   S+              +  L+  
Sbjct: 169  ---IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLTKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 49.3 bits (116), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 143/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V  G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LK 939
           LK
Sbjct: 362 LK 363


>gi|404329832|ref|ZP_10970280.1| 30S ribosomal protein S1 [Sporolactobacillus vineae DSM 21990 =
            SL153]
          Length = 387

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 173/376 (46%), Gaps = 53/376 (14%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +++G  V G V KV+ + AL+ +   +   L I  S      +++     H G  +T  +
Sbjct: 15   LNVGDVVNGKVTKVEEKHALVDVGYKVDGILPI--SELSSLHVEKVSDLLHEGDDITVKI 72

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLV 1278
              +  ++ +L           S + VD     D+++      +     I+ ++ G  GLV
Sbjct: 73   TKMEDDELVL-----------SKREVDADKAWDDLEEKYKNKETFSVEIADVVKG--GLV 119

Query: 1279 VQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSL 1333
            V +G     P      HF E          S Y +G+ +  K++E+ R  R      LS 
Sbjct: 120  VDLGVRGFIPASLVERHFVE--------DFSDY-KGKPLDVKIVELDREKRKVI---LSH 167

Query: 1334 RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDA 1393
            R+ LD  +               K  E +  +    +++G V+ +T  G F+ +   +D 
Sbjct: 168  RAVLDEEADK-------------KKAETLASIKEGDVIEGTVQRLTDFGAFVDIG-GVDG 213

Query: 1394 KVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1453
             V +S L+  +VE+P +    G  V  +VLSV+P S+R+ +++K +       ++     
Sbjct: 214  LVHISQLAHYHVETPSEVVSEGDKVKVKVLSVDPESERISLSIKATQPGPWETAK----D 269

Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             +H GD + G +KR+  +G F+ +    + GL H+SE+S +H+   E +   G+ +KVK+
Sbjct: 270  KIHQGDALQGTVKRLVPFGAFVEL-LPGVEGLVHISEISHEHIGTPEEVLSEGQVIKVKV 328

Query: 1514 LKVDKEKRRISLGMKS 1529
            L V+ + +R+SL +K+
Sbjct: 329  LDVNFQDQRVSLSIKA 344



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 68/116 (58%), Gaps = 2/116 (1%)

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1474
            GK +  +++ ++   ++V ++ +      A + +   L+++  GD++ G ++R+  +G F
Sbjct: 146  GKPLDVKIVELDREKRKVILSHRAVLDEEADKKKAETLASIKEGDVIEGTVQRLTDFGAF 205

Query: 1475 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            + I   +  GL H+S+L+  HV+    +   G+KVKVK+L VD E  RISL +K++
Sbjct: 206  VDIGGVD--GLVHISQLAHYHVETPSEVVSEGDKVKVKVLSVDPESERISLSIKAT 259



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 121/268 (45%), Gaps = 39/268 (14%)

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
            GK +   ++ +++EK+ + L  R   D  +DK            I EGD++ G + ++  
Sbjct: 146  GKPLDVKIVELDREKRKVILSHRAVLDEEADK----KKAETLASIKEGDVIEGTVQRLTD 201

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
               G  V IG  + G VH ++L +  V  P     EG  VK KVL +      +  + LS
Sbjct: 202  F--GAFVDIGG-VDGLVHISQLAHYHVETPSEVVSEGDKVKVKVLSVDPE---SERISLS 255

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
            ++++                  PG      + +     +QG VK +   G F+ L   ++
Sbjct: 256  IKAT-----------------QPGPWETAKDKIHQGDALQGTVKRLVPFGAFVELLPGVE 298

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT------SDSRTASQ 1446
              V +S +S  ++ +PE+    G+++  +VL V    +RV +++K       S S++AS 
Sbjct: 299  GLVHISEISHEHIGTPEEVLSEGQVIKVKVLDVNFQDQRVSLSIKALENEQPSQSKSASA 358

Query: 1447 SEI------NNLSNLHVGDIVIGQIKRV 1468
             +I      ++ S   +GD++  Q+K++
Sbjct: 359  RDIAKATSDDDASGFSLGDMIGDQLKKL 386



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 14/169 (8%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T + +K G V++G V  +  FGA V   GGV  L  +  ++ + +  P +    G ++  
Sbjct: 182 TLASIKEGDVIEGTVQRLTDFGAFVDI-GGVDGLVHISQLAHYHVETPSEVVSEGDKVKV 240

Query: 552 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRF 605
           +VL V  +S+RI+++ K T           +  A D++       G + ++   G FV  
Sbjct: 241 KVLSVDPESERISLSIKATQP-------GPWETAKDKIHQGDALQGTVKRLVPFGAFVEL 293

Query: 606 YNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             GV+G    SE+  +    P  +   GQV+K +++      +R++LS 
Sbjct: 294 LPGVEGLVHISEISHEHIGTPEEVLSEGQVIKVKVLDVNFQDQRVSLSI 342



 Score = 48.5 bits (114), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 136/342 (39%), Gaps = 25/342 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV GKV  V+   A+V     V  + P+  +S   + K       G ++  ++  ++ 
Sbjct: 18  GDVVNGKVTKVEEKHALVDVGYKVDGILPISELSSLHVEKVSDLLHEGDDITVKITKMED 77

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
             + ++ ++         L    +  +       I  + K G  V    GV+GF P S L
Sbjct: 78  DELVLSKREVDADKAWDDLEEKYKNKETFSVE--IADVVKGGLVVDL--GVRGFIPAS-L 132

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDDL--VKLGSL 672
                 E  S Y  G+ +  +I+      R++ LS       +  +   + L  +K G +
Sbjct: 133 VERHFVEDFSDYK-GKPLDVKIVELDREKRKVILSHRAVLDEEADKKKAETLASIKEGDV 191

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
           + G V  +T     V +   G   G +    LA +  H      V+  G +   ++L +D
Sbjct: 192 IEGTVQRLTDFGAFVDI---GGVDGLVHISQLAHY--HVETPSEVVSEGDKVKVKVLSVD 246

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETGCFVRFLGRLTGFA 789
            ES  + LS     I + Q  P + +   IH    + G V  ++  G FV  L  + G  
Sbjct: 247 PESERISLS-----IKATQPGPWETAKDKIHQGDALQGTVKRLVPFGAFVELLPGVEGLV 301

Query: 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
             S+          +    GQ ++  +LDVN +  R++LS+K
Sbjct: 302 HISEISHEHIGTPEEVLSEGQVIKVKVLDVNFQDQRVSLSIK 343


>gi|336441308|gb|AEI54879.1| 30S ribosomal protein S1 [Mycobacterium immunogenum]
          Length = 481

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ R      +V LS R+ L+   S   S+              +  L+  
Sbjct: 169  ---IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLTKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 49.3 bits (116), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 150 ASLVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V  G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LK 939
           LK
Sbjct: 362 LK 363


>gi|365870180|ref|ZP_09409724.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 = JCM
            15300]
 gi|397679450|ref|YP_006520985.1| 30S ribosomal protein S1 [Mycobacterium massiliense str. GO 06]
 gi|414580037|ref|ZP_11437178.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1215]
 gi|418248590|ref|ZP_12874976.1| 30S ribosomal protein S1 [Mycobacterium abscessus 47J26]
 gi|418420385|ref|ZP_12993566.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii BD]
 gi|419712654|ref|ZP_14240111.1| 30S ribosomal protein S1 [Mycobacterium abscessus M93]
 gi|419715386|ref|ZP_14242790.1| 30S ribosomal protein S1 [Mycobacterium abscessus M94]
 gi|420861808|ref|ZP_15325204.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0303]
 gi|420868499|ref|ZP_15331881.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RA]
 gi|420872943|ref|ZP_15336320.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RB]
 gi|420877185|ref|ZP_15340554.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0304]
 gi|420883048|ref|ZP_15346411.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0421]
 gi|420889059|ref|ZP_15352410.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0422]
 gi|420893374|ref|ZP_15356716.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0708]
 gi|420898783|ref|ZP_15362118.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0817]
 gi|420904588|ref|ZP_15367907.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1212]
 gi|420931348|ref|ZP_15394623.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-151-0930]
 gi|420937500|ref|ZP_15400769.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-152-0914]
 gi|420941605|ref|ZP_15404863.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-153-0915]
 gi|420948277|ref|ZP_15411527.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-154-0310]
 gi|420951858|ref|ZP_15415102.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0626]
 gi|420956028|ref|ZP_15419265.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0107]
 gi|420961691|ref|ZP_15424917.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-1231]
 gi|420971496|ref|ZP_15434691.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0921]
 gi|420989221|ref|ZP_15452377.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0206]
 gi|420991997|ref|ZP_15455145.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0307]
 gi|420997834|ref|ZP_15460972.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-R]
 gi|421002273|ref|ZP_15465399.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-S]
 gi|421037697|ref|ZP_15500709.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-R]
 gi|421043297|ref|ZP_15506298.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-S]
 gi|421049238|ref|ZP_15512233.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 = JCM
            15300]
 gi|183427450|gb|ACC62511.1| S1 ribosomal protein [Mycobacterium abscessus]
 gi|336441304|gb|AEI54877.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii]
 gi|336441310|gb|AEI54880.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii]
 gi|353453083|gb|EHC01477.1| 30S ribosomal protein S1 [Mycobacterium abscessus 47J26]
 gi|363997369|gb|EHM18581.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 = JCM
            15300]
 gi|364000222|gb|EHM21423.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii BD]
 gi|382937435|gb|EIC61789.1| 30S ribosomal protein S1 [Mycobacterium abscessus M93]
 gi|382943954|gb|EIC68264.1| 30S ribosomal protein S1 [Mycobacterium abscessus M94]
 gi|392067969|gb|EIT93816.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RA]
 gi|392071971|gb|EIT97812.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RB]
 gi|392076969|gb|EIU02800.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0303]
 gi|392088676|gb|EIU14496.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0304]
 gi|392090018|gb|EIU15834.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0421]
 gi|392090152|gb|EIU15966.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0422]
 gi|392101964|gb|EIU27751.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0708]
 gi|392106492|gb|EIU32277.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0817]
 gi|392107053|gb|EIU32836.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1212]
 gi|392119861|gb|EIU45628.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1215]
 gi|392136107|gb|EIU61844.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-151-0930]
 gi|392143015|gb|EIU68740.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-152-0914]
 gi|392151087|gb|EIU76799.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-153-0915]
 gi|392155307|gb|EIU81013.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-154-0310]
 gi|392157170|gb|EIU82867.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0626]
 gi|392168207|gb|EIU93886.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0921]
 gi|392183500|gb|EIV09151.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0206]
 gi|392186611|gb|EIV12257.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0307]
 gi|392187546|gb|EIV13187.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-R]
 gi|392197486|gb|EIV23101.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-S]
 gi|392229378|gb|EIV54889.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-R]
 gi|392237149|gb|EIV62643.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-S]
 gi|392241151|gb|EIV66641.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898]
 gi|392251725|gb|EIV77197.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-1231]
 gi|392252927|gb|EIV78395.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0107]
 gi|395457715|gb|AFN63378.1| 30S ribosomal protein S1 [Mycobacterium massiliense str. GO 06]
          Length = 481

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ R      +V LS R+ L+   S   S+              +  L+  
Sbjct: 169  ---IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLTKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 49.3 bits (116), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 150 ASLVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V  G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LK 939
           LK
Sbjct: 362 LK 363


>gi|392944252|ref|ZP_10309894.1| ribosomal protein S1 [Frankia sp. QA3]
 gi|392287546|gb|EIV93570.1| ribosomal protein S1 [Frankia sp. QA3]
          Length = 493

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 179/386 (46%), Gaps = 50/386 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P E+        +G  V   
Sbjct: 49   GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEV------VSVGDHVEAL 102

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 103  VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKLKDEDGVVTGTVIEVVKG--GLIL 153

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 154  DIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRRAWLEQ 206

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L+   I +G V ++ + G F+ L   +D  V +S 
Sbjct: 207  TQSEVRSEF-------------LAQLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 252

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +G
Sbjct: 253  LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIG 307

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             +V G++ ++  +G F+ ++   + GL H+SEL+E HV+  E +   G+++ VK++ +D 
Sbjct: 308  QVVPGRVTKLVPFGAFVRVDE-GIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDL 366

Query: 1519 EKRRISLGMKSSYFKNDADNLQMSSE 1544
            ++RRISL +K +   N+A  L +  E
Sbjct: 367  DRRRISLSLKQA---NEASGLAVDGE 389



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDKE 110

Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKDEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 222

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 938 LK 939
           LK
Sbjct: 375 LK 376



 Score = 41.6 bits (96), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 149/352 (42%), Gaps = 31/352 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKED 108

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKD-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 220

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEAS 382


>gi|433608430|ref|YP_007040799.1| 30S ribosomal protein S1 [Saccharothrix espanaensis DSM 44229]
 gi|407886283|emb|CCH33926.1| 30S ribosomal protein S1 [Saccharothrix espanaensis DSM 44229]
          Length = 498

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 186/400 (46%), Gaps = 53/400 (13%)

Query: 1142 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1191
            P  + +++IG++  F    D +I     G  V G + KVD +  LL I       + ++ 
Sbjct: 14   PKQVAINDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRE 73

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +P+E+        +G  V   VL   KE K  RL+L   +        + +  
Sbjct: 74   LSIKHDVDPNEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWG 120

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 121  TIEALKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 174

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   S+              +  L    + 
Sbjct: 175  LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKGQVR 218

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +R
Sbjct: 219  KGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERER 277

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      Q      +  H +G IV G++ ++  +G F+ ++   + GL H+SE
Sbjct: 278  VSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVDE-GIEGLVHISE 331

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+E HV+  E + + G+ V VK++ +D ++RRISL +K +
Sbjct: 332  LAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLSLKQA 371



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 167/392 (42%), Gaps = 36/392 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 42  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKED 101

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 102 KEGRLILSKKRAQYERAWGTIEALKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 157

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 158 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 213

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 214 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 267

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D E   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 268 VLDVDMERERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 323

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASFMQ 844
            G    S+  +       +   VG  V   ++D++ +  RI+LSLKQ+    T D+ F  
Sbjct: 324 EGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLSLKQANEGFTVDSEFDP 383

Query: 845 EHFLL----EEKIAMLQSSKHNGSELKWVEGF 872
             + +    +++   +     +    +W EGF
Sbjct: 384 TQYGMAAEYDDQGNYIYPEGFDPETQEWQEGF 415



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 44  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKEDKE 103

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P    
Sbjct: 104 GRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP---- 155

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 156 ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 215

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ E
Sbjct: 216 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDME 274

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 275 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 307

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  +E  +    I+     H ++    V+ G  +   ++D+    R + LS
Sbjct: 308 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLS 367

Query: 938 LK 939
           LK
Sbjct: 368 LK 369



 Score = 44.7 bits (104), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 119/266 (44%), Gaps = 34/266 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +   +   
Sbjct: 144  LILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAW---LEQT 200

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +   + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 201  QSEVRSEFLNQ-LQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 256

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++ +                P +   +   
Sbjct: 257  VVEVGQEVTVEVLDVDMERE---RVSLSLKATQE---------------DPWRQFARTHA 298

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +G  V  +V+ 
Sbjct: 299  I--GQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMVKVID 356

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEIN 1450
            ++   +R+ ++LK ++      SE +
Sbjct: 357  IDLDRRRISLSLKQANEGFTVDSEFD 382


>gi|336178098|ref|YP_004583473.1| RNA binding S1 domain-containing protein [Frankia symbiont of Datisca
            glomerata]
 gi|334859078|gb|AEH09552.1| RNA binding S1 domain protein [Frankia symbiont of Datisca glomerata]
          Length = 484

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 188/406 (46%), Gaps = 56/406 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 15   VAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 74

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 75   KHDVDPHEV------VTVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 121

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 122  KLKEEDGVVNGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEA 175

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L+   I +G 
Sbjct: 176  KIIELDKN---RNNVVLSRRAWLEQTQSEVRSEF-------------LAQLAKGQIRKGV 219

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 220  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLERERVSL 278

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      Q      +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+E
Sbjct: 279  SLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRV-DEGIEGLVHISELAE 332

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1539
             HV+  E +   G+++ VK++ +D ++RRISL +K +   ND+  L
Sbjct: 333  RHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA---NDSSAL 375



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 42  IVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKEDKE 101

Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 102 GRLILSKKRAQYERAWGTIEKLKEEDGVVNGTVIEVVKGGLILDIGLRGFLPASL----- 156

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 157 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 213

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ E
Sbjct: 214 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLE 272

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 273 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 305

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 306 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 365

Query: 938 LK 939
           LK
Sbjct: 366 LK 367



 Score = 47.8 bits (112), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 147/353 (41%), Gaps = 31/353 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 40  GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKED 99

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E     + +G + ++ K G  +    G++GF P S
Sbjct: 100 KEGRLILSKKRAQYERAWGTIEKLKEEDG--VVNGTVIEVVKGGLILDI--GLRGFLPAS 155

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 156 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 211

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 212 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 265

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D E   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 266 VLDVDLERERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 321

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  SS 
Sbjct: 322 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANDSSA 374


>gi|172040820|ref|YP_001800534.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
 gi|448823792|ref|YP_007416958.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7111]
 gi|171852124|emb|CAQ05100.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
 gi|448277289|gb|AGE36713.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7111]
          Length = 486

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 174/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD++  LL I       + ++   +    +P+E+ E      +G  +   
Sbjct: 34   GDIVEGTIVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVE------VGDEIDAL 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++      + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEQLKENDEPVTGTVIEVVKG--GLIL 138

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG----QEIEAKIIELDKHRN---NVVLSRRAYLEE 191

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 192  TQSAVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 237

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H +G
Sbjct: 238  LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAIG 292

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + I   GE+V VK++ +D 
Sbjct: 293  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQIVNVGEEVMVKVIDIDL 351

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 352  ERRRISLSLKQA 363



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 166/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTIVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVEVGDEIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEQLKE-NDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAYLEETQSAVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+  +       +   VG+ V   ++D++ E  RI+LSLKQ+     D  F +
Sbjct: 315 IEGLVHISELAERHVEVPDQIVNVGEEVMVKVIDIDLERRRISLSLKQA-----DEDFTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405



 Score = 41.2 bits (95), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 114/259 (44%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IG+ +   ++ ++K +  + L  R + +     
Sbjct: 136  LILDIGLRGFLPASLVEMRRVRDLQPYIGQEIEAKIIELDKHRNNVVLSRRAYLE----- 190

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
              +  +     F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 191  --ETQSAVRSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLGG-VDGLVHVSELSWKHIDH 245

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 246  PSEVVTVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRVFAR 287

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G+ V  +
Sbjct: 288  THAIG--QIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQIVNVGEEVMVK 345

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK +D
Sbjct: 346  VIDIDLERRRISLSLKQAD 364


>gi|169629382|ref|YP_001703031.1| 30S ribosomal protein S1 [Mycobacterium abscessus ATCC 19977]
 gi|420909888|ref|ZP_15373201.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-R]
 gi|420916343|ref|ZP_15379647.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-S]
 gi|420920887|ref|ZP_15384184.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-S]
 gi|420927169|ref|ZP_15390451.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-1108]
 gi|420966669|ref|ZP_15429874.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0810-R]
 gi|420977508|ref|ZP_15440687.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0212]
 gi|420982889|ref|ZP_15446058.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-R]
 gi|421007295|ref|ZP_15470407.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0119-R]
 gi|421012807|ref|ZP_15475894.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-R]
 gi|421017716|ref|ZP_15480776.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-S]
 gi|421023271|ref|ZP_15486318.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0731]
 gi|421029448|ref|ZP_15492482.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-R]
 gi|421033301|ref|ZP_15496323.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-S]
 gi|169241349|emb|CAM62377.1| 30S ribosomal protein S1 [Mycobacterium abscessus]
 gi|336441300|gb|AEI54875.1| 30S ribosomal protein S1 [Mycobacterium abscessus]
 gi|392120483|gb|EIU46249.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-S]
 gi|392122262|gb|EIU48027.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-R]
 gi|392130723|gb|EIU56469.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-S]
 gi|392134402|gb|EIU60143.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-1108]
 gi|392166708|gb|EIU92391.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0212]
 gi|392172369|gb|EIU98040.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-R]
 gi|392200224|gb|EIV25831.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0119-R]
 gi|392205347|gb|EIV30931.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-R]
 gi|392210502|gb|EIV36069.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-S]
 gi|392214240|gb|EIV39792.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0731]
 gi|392228953|gb|EIV54465.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-R]
 gi|392229842|gb|EIV55352.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-S]
 gi|392252110|gb|EIV77579.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0810-R]
          Length = 481

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ R      +V LS R+ L+   S   S+              +  L+  
Sbjct: 169  ---IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLTKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 143/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V  G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LK 939
           LK
Sbjct: 362 LK 363



 Score = 42.0 bits (97), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 113/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ +++ +  + L  R +   +   
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAW---LEQT 194

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +     +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 195  QSEVRSEFLNQLT-KGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S LS+ +VE P++   +G     +V+ 
Sbjct: 293  IG--QIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|225164097|ref|ZP_03726379.1| ribosomal protein S1 [Diplosphaera colitermitum TAV2]
 gi|224801303|gb|EEG19617.1| ribosomal protein S1 [Diplosphaera colitermitum TAV2]
          Length = 555

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 186/394 (47%), Gaps = 52/394 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAVTGH 1219
            GQ   G V  + +  A + +   +   L I D ++     PSE+         G+ +   
Sbjct: 185  GQVRKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRIAHPSEM------LKQGEEIQVM 237

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            ++ +N++K+ + L L+        +T     D ++     G  + G++  ++    G  +
Sbjct: 238  IIEVNRDKERVSLGLK--------QTTKNPWDEIEQKFPVGTKIHGKVVNLVPY--GAFI 287

Query: 1280 QIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            +I P + G VH TE+     ++ P      GQ +   VL I +  +    + L LR    
Sbjct: 288  EIEPGVEGLVHITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQ---KISLGLRQL-- 342

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
                 N  D+        +H   I        V G V+N+T+ G FI L   +D  V +S
Sbjct: 343  ---EPNPWDMV-------RHNYPI-----GARVHGKVRNMTTYGAFIELEEGIDGMVHVS 387

Query: 1399 NLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1457
            ++S    V  P +    G  V   VL V+P  +R+ + +K         S+I++     +
Sbjct: 388  DMSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQQRISLGMKQL--AVDPWSDIDSF--FKI 443

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            GD+V G + ++ S+G F+ +++  + GL H+S++SE+ ++ ++ + + G++V  +++K+D
Sbjct: 444  GDVVKGTVTKITSFGAFVDLKD-GIDGLVHISQISEERIEKVKDVLKPGQEVTARVIKID 502

Query: 1518 KEKRRISLGMKSSYFKNDADNLQMSSEEESDEAI 1551
            +++RR+ L +K++ +  +    Q++SE  + EA+
Sbjct: 503  RDERRLGLSIKAANYSPE----QLASETAAYEAL 532



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 131/281 (46%), Gaps = 33/281 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE-- 1308
            +N+ T   EG +  GR+   + G  GL++ IG   +      +++      P    D+  
Sbjct: 90   ENILTKFPEGSVAVGRVKAKVKG--GLIISIGVDAFMPASHIDIQ------PPKNLDQYV 141

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
            GQ    KVL+I++  +   ++ LS R  ++   S    +L             +E + P 
Sbjct: 142  GQTYDFKVLKINQERK---NIVLSRRELIEQQRSEKRRNL-------------LESIQPG 185

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G VKN+T  G FI L   +D  + ++++S G +  P +    G+ +   ++ V   
Sbjct: 186  QVRKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRIAHPSEMLKQGEEIQVMIIEVNRD 244

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
             +RV + LK +      + E        VG  + G++  +  YG FI IE   + GL H+
Sbjct: 245  KERVSLGLKQTTKNPWDEIE----QKFPVGTKIHGKVVNLVPYGAFIEIE-PGVEGLVHI 299

Query: 1489 SELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            +E+S    ++    + R G+++   +L + KE ++ISLG++
Sbjct: 300  TEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLR 340



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 147/359 (40%), Gaps = 40/359 (11%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PG V KG V  +  FGA +    G+  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 182 IQPGQVRKGVVKNITDFGAFIDL-DGMDGLLHITDMSWGRIAHPSEMLKQGEEIQVMIIE 240

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R+++  K+T       I   +   T     HG +  +  +G F+    GV+G  
Sbjct: 241 VNRDKERVSLGLKQTTKNPWDEIEQKFPVGTK---IHGKVVNLVPYGAFIEIEPGVEGLV 297

Query: 614 PRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK--- 668
             +E+       +PS M  VGQ +   ++      ++I+L    ++P      D+V+   
Sbjct: 298 HITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPNPW---DMVRHNY 354

Query: 669 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 722
            +G+ V G V  +T     + +      +G     H++D      + H +    V+K G 
Sbjct: 355 PIGARVHGKVRNMTTYGAFIEL-----EEGIDGMVHVSDMSWTRKVNHPS---EVLKKGD 406

Query: 723 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGC 777
           E D + VLD + S   +S         +QL  D      S      VV G V  I   G 
Sbjct: 407 EVDAI-VLDVDPSQQRISL------GMKQLAVDPWSDIDSFFKIGDVVKGTVTKITSFGA 459

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           FV     + G    S+  + +   +      GQ V + ++ ++ +  R+ LS+K +  S
Sbjct: 460 FVDLKDGIDGLVHISQISEERIEKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAANYS 518



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 123/567 (21%), Positives = 226/567 (39%), Gaps = 91/567 (16%)

Query: 576  ILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG-CEPSSMY 630
            +L+    A D+L    I  G IT+I ++   V      +G  P +E  +D G  +  S  
Sbjct: 4    LLAQEPAAFDKLKEGQIVSGVITEIRQNEVVVDIGGKSEGVIPANEF-IDIGELQIGSTI 62

Query: 631  HVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVV 687
             V  V K    + +P      LSF   +  +  E+ L K   GS+  G V       +++
Sbjct: 63   EV-YVEKLEDKNGLPV-----LSFDKAEQKKNWENILTKFPEGSVAVGRVKAKVKGGLII 116

Query: 688  YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN 747
             +    +    +P  H+   ++    +   +   Y+F ++L ++ E  N++LS +  LI 
Sbjct: 117  SIGVDAF----MPASHI--DIQPPKNLDQYVGQTYDF-KVLKINQERKNIVLS-RRELIE 168

Query: 748  S--AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
               +++  +    I P  V  G V NI + G F+   G + G    +    G+ A  S+ 
Sbjct: 169  QQRSEKRRNLLESIQPGQVRKGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRIAHPSEM 227

Query: 806  YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
               G+ ++  I++VN +  R++L LKQ+  +  D         +E+K             
Sbjct: 228  LKQGEEIQVMIIEVNRDKERVSLGLKQTTKNPWDE--------IEQK------------- 266

Query: 866  LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA------GATVESGSV 919
                  F +G+ I GKV     +G  +  E   +    IT              +  G  
Sbjct: 267  ------FPVGTKIHGKVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRINKPSEMLRVGQE 320

Query: 920  IQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVE 979
            + A +L + K ++ + L L+ +  + +     N     +           VH  V  +  
Sbjct: 321  LDAVVLGIQKEDQKISLGLRQLEPNPWDMVRHNYPIGAR-----------VHGKVRNMT- 368

Query: 980  IVKENYLVLSLPEYNHSI-GYASVSDYN-TQKF--PQKQFLNGQSVIATVMALPSSSTAG 1035
                     +  E    I G   VSD + T+K   P +    G  V A V+ +  S    
Sbjct: 369  ------TYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQQ-- 420

Query: 1036 RLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 1095
            R+ L +K ++    S        S + +G +V+  +T+I      +    G  G +HI++
Sbjct: 421  RISLGMKQLAVDPWSDI-----DSFFKIGDVVKGTVTKITSFGAFVDLKDGIDGLVHISQ 475

Query: 1096 VNDDKSNVVENLFSNFKIGQTVTARII 1122
            +++++   +E +    K GQ VTAR+I
Sbjct: 476  ISEER---IEKVKDVLKPGQEVTARVI 499



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 71/127 (55%), Gaps = 3/127 (2%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            +G+    +VL +    K + ++ +    +  S+   N L ++  G +  G +K +  +G 
Sbjct: 141  VGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLLESIQPGQVRKGVVKNITDFGA 200

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1533
            FI ++  +  GL H++++S   + +   + + GE+++V I++V+++K R+SLG+K +  K
Sbjct: 201  FIDLDGMD--GLLHITDMSWGRIAHPSEMLKQGEEIQVMIIEVNRDKERVSLGLKQTT-K 257

Query: 1534 NDADNLQ 1540
            N  D ++
Sbjct: 258  NPWDEIE 264



 Score = 48.1 bits (113), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 88/471 (18%), Positives = 182/471 (38%), Gaps = 61/471 (12%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G +V G +  +     +V   G  + + P     +   ++ G   +V  E +    G
Sbjct: 15  LKEGQIVSGVITEIRQNEVVVDIGGKSEGVIPANEFIDIGELQIGSTIEVYVEKLEDKNG 74

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           +         +K   K+   IL+ + E +   +  G +    K G  +    GV  F P 
Sbjct: 75  LPVLSFDKAEQK---KNWENILTKFPEGS---VAVGRVKAKVKGGLIISI--GVDAFMPA 126

Query: 616 SELGLDPGCEPSSM-YHVGQVVKCRIMS------SIPASRRINLSFMMKPTRVSEDDLVK 668
           S + + P   P ++  +VGQ    +++       +I  SRR  +       R +  + ++
Sbjct: 127 SHIDIQP---PKNLDQYVGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLLESIQ 183

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
            G +  GVV  +T      ++   G       T+     + H + M   +K G E   ++
Sbjct: 184 PGQVRKGVVKNITDFGA--FIDLDGMDGLLHITDMSWGRIAHPSEM---LKQGEEIQVMI 238

Query: 729 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           + ++ +   + L  K +  N   ++          + +HG V N++  G F+     + G
Sbjct: 239 IEVNRDKERVSLGLKQTTKNPWDEI---EQKFPVGTKIHGKVVNLVPYGAFIEIEPGVEG 295

Query: 788 FAPRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
               ++    +R +  S+   VGQ + + +L +  E  +I+L L+Q   +  D       
Sbjct: 296 LVHITEMSWTKRINKPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPNPWDMV----- 350

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                        +HN         + IG+ + GKV     +G  +  EE  D    ++ 
Sbjct: 351 -------------RHN---------YPIGARVHGKVRNMTTYGAFIELEEGIDGMVHVSD 388

Query: 907 HQLA------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
                        ++ G  + A +LDV  +++ + L +K + +D + + +S
Sbjct: 389 MSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQQRISLGMKQLAVDPWSDIDS 439



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 130/320 (40%), Gaps = 43/320 (13%)

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
            P +    G+ +   VM +  +    R+ L LK     +T+ +   + +  + VG+ +  +
Sbjct: 224  PSEMLKQGEEI--QVMIIEVNRDKERVSLGLK-----QTTKNPWDEIEQKFPVGTKIHGK 276

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
            +  + P    ++   G  G +HITE++  K   +       ++GQ + A ++    K D 
Sbjct: 277  VVNLVPYGAFIEIEPGVEGLVHITEMSWTKR--INKPSEMLRVGQELDA-VVLGIQKEDQ 333

Query: 1131 KKSF-LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKA 1189
            K S  L +L   P  +              +  IG RV G V  +    A + +   +  
Sbjct: 334  KISLGLRQLEPNPWDMV-----------RHNYPIGARVHGKVRNMTTYGAFIELEEGIDG 382

Query: 1190 QLFILDSAY-----EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             + + D ++      PSE+         G  V   VL ++  ++ + L       G+   
Sbjct: 383  MVHVSDMSWTRKVNHPSEV------LKKGDEVDAIVLDVDPSQQRISL-------GMKQL 429

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             VD  +D + +F   GD+V G ++KI S   G  V +   + G VH +++    +     
Sbjct: 430  AVDPWSD-IDSFFKIGDVVKGTVTKITS--FGAFVDLKDGIDGLVHISQISEERIEKVKD 486

Query: 1305 GYDEGQFVKCKVLEISRTVR 1324
                GQ V  +V++I R  R
Sbjct: 487  VLKPGQEVTARVIKIDRDER 506



 Score = 43.9 bits (102), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 139/322 (43%), Gaps = 56/322 (17%)

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHI 1212
            E    +G ++ G V  +    A + I   ++  + I + ++     +PSE+        +
Sbjct: 264  EQKFPVGTKIHGKVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRINKPSEM------LRV 317

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
            G+ +   VL I KE + + L LR  +             N    +     +G R+   + 
Sbjct: 318  GQELDAVVLGIQKEDQKISLGLRQLEP------------NPWDMVRHNYPIGARVHGKVR 365

Query: 1273 GVG--GLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
             +   G  +++   + G VH +++     V+ P     +G  V   VL++  + +     
Sbjct: 366  NMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDPSQQ----- 420

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
                R SL GM    + D  +D+D+      KI D     +V+G V  +TS G F+ L  
Sbjct: 421  ----RISL-GMKQL-AVDPWSDIDS----FFKIGD-----VVKGTVTKITSFGAFVDLKD 465

Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD-------SR 1442
             +D  V +S +S+  +E  +     G+ V  RV+ ++   +R+ +++K ++       S 
Sbjct: 466  GIDGLVHISQISEERIEKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAANYSPEQLASE 525

Query: 1443 TASQSEINNLSN---LHVGDIV 1461
            TA+   +N  S+   +++GDI+
Sbjct: 526  TAAYEALNRDSSGDMMNLGDIL 547



 Score = 40.8 bits (94), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 156/385 (40%), Gaps = 39/385 (10%)

Query: 188 HVGQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDH 246
           +VGQ     VL+++ ++K I   R+  +  + S   + L LE++Q G V    VK+I D 
Sbjct: 140 YVGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNL-LESIQPGQVRKGVVKNITDF 198

Query: 247 GYILHF----GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDT 302
           G  +      GL   T  +    +A  S + +K G  +Q ++  ++R ++ V L      
Sbjct: 199 GAFIDLDGMDGLLHITD-MSWGRIAHPSEM-LKQGEEIQVMIIEVNRDKERVSLGL---- 252

Query: 303 VSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 361
             K  TK+     I+   P G  +  +V +++  G  +       G V I  +  T    
Sbjct: 253 --KQTTKN-PWDEIEQKFPVGTKIHGKVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRIN 309

Query: 362 NWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAPP----SHVKVGDIYD 412
                    ++++A +L +    + + L L     NP+ +     P     H KV ++  
Sbjct: 310 KPSEMLRVGQELDAVVLGIQKEDQKISLGLRQLEPNPWDMVRHNYPIGARVHGKVRNMTT 369

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGFR 471
               + ++ G+                V +SD++   +V    +  K+G  V   +L   
Sbjct: 370 YGAFIELEEGID-------------GMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVD 416

Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHM 531
             +   +  +K  A +      S  K G VVKG V  + SFGA V    G+  L  +  +
Sbjct: 417 PSQQRISLGMKQLAVDPWSDIDSFFKIGDVVKGTVTKITSFGAFVDLKDGIDGLVHISQI 476

Query: 532 SEFEIVKPGKKFKVGAELVFRVLGV 556
           SE  I K     K G E+  RV+ +
Sbjct: 477 SEERIEKVKDVLKPGQEVTARVIKI 501


>gi|254820984|ref|ZP_05225985.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
          Length = 479

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407



 Score = 48.5 bits (114), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 148/381 (38%), Gaps = 53/381 (13%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 644 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 931
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEE--GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 932 RLVDLSLKTV---FIDRFREA 949
           R + LSLK     + D F  A
Sbjct: 356 RRISLSLKQANEDYTDEFDPA 376



 Score = 43.9 bits (102), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 111/256 (43%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----Q 193

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 194  TQSEVRSEFLNQLQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|395242108|ref|ZP_10419107.1| 30S Ribosomal protein S1 [Lactobacillus pasteurii CRBIP 24.76]
 gi|394480469|emb|CCI85347.1| 30S Ribosomal protein S1 [Lactobacillus pasteurii CRBIP 24.76]
          Length = 402

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +V+G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDALKVGQDVKVKVIGIDDDR 258

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
             R+ +++K ++     Q+     S LH GDI  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TSGLHEGDIFEGEVKSLTNFGAFVEVTD-GIQGLVHVS 313

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E+S  HVD    + + G+ VKVK+L +D  ++RISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQSVKVKVLGIDPSEKRISLSIKAT 354



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 10/160 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV+GKV  + +FGA +   GGV  L  +  +S   + KP    KVG ++  +V+G+  
Sbjct: 198 GDVVEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDALKVGQDVKVKVIGIDD 256

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAP 614
            R    H+ +L   K    S + +AT  L    I  G +  +   G FV   +G+QG   
Sbjct: 257 DR----HRISL-SIKQTEPSPFEQATSGLHEGDIFEGEVKSLTNFGAFVEVTDGIQGLVH 311

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            SE+      +PS +  VGQ VK +++   P+ +RI+LS 
Sbjct: 312 VSEISNKHVDKPSDVLKVGQSVKVKVLGIDPSEKRISLSI 351



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD+V G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFGKVASQLVVGDVVEGKVSRLTNFGA 213

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            FI +   +  GL H+SE+S  HVD      + G+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDALKVGQDVKVKVIGIDDDRHRISLSIKQT 268



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 23/189 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD+V G++S++ +   G  + +G  + G VH +E+    V  P      GQ VK KV+ I
Sbjct: 198  GDVVEGKVSRLTNF--GAFIDVG-GVDGLVHISEISYKHVDKPSDALKVGQDVKVKVIGI 254

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                     + LS++ +                  P    +    L    I +G VK++T
Sbjct: 255  DDD---RHRISLSIKQT-----------------EPSPFEQATSGLHEGDIFEGEVKSLT 294

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
            + G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL ++P  KR+ +++K +
Sbjct: 295  NFGAFVEVTDGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLGIDPSEKRISLSIKAT 354

Query: 1440 DSRTASQSE 1448
            D   +S  +
Sbjct: 355  DENASSNED 363



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 129/322 (40%), Gaps = 37/322 (11%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           E+VKPG+ FK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  ELVKPGETFKA---LVLRRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNPIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        SS Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SSRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSFMMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS         E+   K+      G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFGKVASQLVVGDVVEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H       +K G +   +++ +D++   + LS K +  +  +Q     S +H 
Sbjct: 228 EIS--YKHVDKPSDALKVGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQA---TSGLHE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             +  G V ++   G FV     + G    S+  +      S    VGQSV+  +L ++ 
Sbjct: 283 GDIFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLGIDP 342

Query: 822 ETGRITLSLK---QSCCSSTDA 840
              RI+LS+K   ++  S+ DA
Sbjct: 343 SEKRISLSIKATDENASSNEDA 364


>gi|392416422|ref|YP_006453027.1| ribosomal protein S1 [Mycobacterium chubuense NBB4]
 gi|390616198|gb|AFM17348.1| ribosomal protein S1 [Mycobacterium chubuense NBB4]
          Length = 480

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 187/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S+    + +++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVALNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L+  
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLTKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LK 939
           LK
Sbjct: 362 LK 363



 Score = 47.8 bits (112), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 149/354 (42%), Gaps = 31/354 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLT 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    +D
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYSD 371



 Score = 44.3 bits (103), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 116/264 (43%), Gaps = 34/264 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R +   +   
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAW---LEQT 194

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +     +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 195  QSEVRSEFLNQLT-KGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S LS+ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSE 1448
            ++   +R+ ++LK ++   + + E
Sbjct: 351  IDLERRRISLSLKQANEDYSDEFE 374


>gi|429758811|ref|ZP_19291324.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 181 str. F0379]
 gi|429173025|gb|EKY14562.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 181 str. F0379]
          Length = 485

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 188/407 (46%), Gaps = 45/407 (11%)

Query: 1139 SIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
            ++    + V++IGS+  L    D +I     G  V G V KVD++  LL I    K +  
Sbjct: 9    AVSTPQVAVNDIGSREDLLAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEGV 66

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
            IL                 +G  +   VL   KE K  RL+L   +        + +   
Sbjct: 67   ILSRELSIKHDVNPDDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWGQ 119

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    +
Sbjct: 120  IEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE----I 173

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            + K++E+ +      +V LS R+ L+   S   ++              +  L    +  
Sbjct: 174  EAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LHTLQKGQVRS 217

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV
Sbjct: 218  GVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERV 276

Query: 1433 EVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
             ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL
Sbjct: 277  SLSLKAT-----QEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISEL 330

Query: 1492 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1538
            ++ HV+  E + + G++V VK++ +D E+RRISL +K +  + D ++
Sbjct: 331  AQRHVELPEQVVKVGDEVFVKVIDIDLERRRISLSLKQANERVDPNS 377



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 7/173 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H+ ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+ 
Sbjct: 206 FLHT-LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 263

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      +  G +TK+   G FVR  +G
Sbjct: 264 VEVLDVDMDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDG 320

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661
           ++G    SEL       P  +  VG  V  +++      RRI+LS      RV
Sbjct: 321 IEGLVHISELAQRHVELPEQVVKVGDEVFVKVIDIDLERRRISLSLKQANERV 373



 Score = 49.3 bits (116), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 130/293 (44%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R      +IG+ 
Sbjct: 114  ERAWGQIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLAPYIGRE 172

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++  + + T + +G +  G +S I++   
Sbjct: 173  IEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLHT-LQKGQVRSGVVSSIVNF-- 226

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 227  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 282

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +    T +   +     PGK                 V  +   G F+ +   ++  V
Sbjct: 283  TQEDPWQTFARTHAIGQVVPGK-----------------VTKLVPFGAFVRVEDGIEGLV 325

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G  V  +V+ ++   +R+ ++LK ++ R    SE
Sbjct: 326  HISELAQRHVELPEQVVKVGDEVFVKVIDIDLERRRISLSLKQANERVDPNSE 378



 Score = 48.1 bits (113), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 143/367 (38%), Gaps = 56/367 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G + K++     +      +G     EL +     P  +  VG  ++  ++      
Sbjct: 42  IVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKEDKE 101

Query: 648 RRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 699
            R+ LS           +  +V E+D      +V+G V  V    +++ +  +G+   ++
Sbjct: 102 GRLLLSKKRAQYERAWGQIEKVKEED-----GVVTGTVIEVVKGGLILDIGLRGFLPASL 156

Query: 700 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
                   +E   V       G E + +++ LD   +N++LS +  L  +  ++ ++  H
Sbjct: 157 --------VEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLH 208

Query: 759 -IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
            +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L
Sbjct: 209 TLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 267

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
           DV+ +  R++LSLK +       +F + H                           IG V
Sbjct: 268 DVDMDRERVSLSLK-ATQEDPWQTFARTH--------------------------AIGQV 300

Query: 878 IEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAER 932
           + GKV +   FG  V  E+  +    I+     H +L    V+ G  +   ++D+    R
Sbjct: 301 VPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPEQVVKVGDEVFVKVIDIDLERR 360

Query: 933 LVDLSLK 939
            + LSLK
Sbjct: 361 RISLSLK 367



 Score = 44.3 bits (103), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 40  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKED 99

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 100 KEGRLLLSKKRAQYERAWGQIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 155

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 156 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 211

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 212 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 265

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 266 VLDVDMDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 321

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 322 EGLVHISELAQRHVELPEQVVKVGDEVFVKVIDIDLERRRISLSLKQA 369


>gi|300858350|ref|YP_003783333.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
 gi|375288519|ref|YP_005123060.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 3/99-5]
 gi|379715230|ref|YP_005303567.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 316]
 gi|383314109|ref|YP_005374964.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis P54B96]
 gi|384504528|ref|YP_005681198.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
 gi|384506621|ref|YP_005683290.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
 gi|384508709|ref|YP_005685377.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
 gi|384510800|ref|YP_005690378.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis PAT10]
 gi|385807399|ref|YP_005843796.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 267]
 gi|386740269|ref|YP_006213449.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 31]
 gi|387136462|ref|YP_005692442.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 42/02-A]
 gi|387138534|ref|YP_005694513.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis CIP
            52.97]
 gi|387140533|ref|YP_005696511.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1/06-A]
 gi|389850285|ref|YP_006352520.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 258]
 gi|300685804|gb|ADK28726.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
 gi|302206068|gb|ADL10410.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
 gi|302330619|gb|ADL20813.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
 gi|308276305|gb|ADO26204.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
 gi|341824739|gb|AEK92260.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis PAT10]
 gi|348606907|gb|AEP70180.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 42/02-A]
 gi|349735012|gb|AEQ06490.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis CIP
            52.97]
 gi|355392324|gb|AER68989.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1/06-A]
 gi|371575808|gb|AEX39411.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 3/99-5]
 gi|377653936|gb|AFB72285.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 316]
 gi|380869610|gb|AFF22084.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis P54B96]
 gi|383804792|gb|AFH51871.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 267]
 gi|384476963|gb|AFH90759.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 31]
 gi|388247591|gb|AFK16582.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 258]
          Length = 487

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 185/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAVDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G    Q ++ 
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG----QQIEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 170  KIIELDKQRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGV 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++
Sbjct: 273  SLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQ 326

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  + +   G++  VK++ +D E+RRISL +K +
Sbjct: 327  RHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA 363



 Score = 57.8 bits (138), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 360



 Score = 48.9 bits (115), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWMEGF 405


>gi|118617252|ref|YP_905584.1| 30S ribosomal protein S1 [Mycobacterium ulcerans Agy99]
 gi|183982447|ref|YP_001850738.1| 30S ribosomal protein S1 [Mycobacterium marinum M]
 gi|443491265|ref|YP_007369412.1| 30S ribosomal protein S1 [Mycobacterium liflandii 128FXT]
 gi|118569362|gb|ABL04113.1| ribosomal protein S1 RpsA [Mycobacterium ulcerans Agy99]
 gi|183175773|gb|ACC40883.1| ribosomal protein S1 RpsA [Mycobacterium marinum M]
 gi|442583762|gb|AGC62905.1| 30S ribosomal protein S1 [Mycobacterium liflandii 128FXT]
          Length = 481

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDQTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VTVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  TIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVTVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDDQGNYIFPEGFDPETNEWMEGF 407



 Score = 48.9 bits (115), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 148/377 (39%), Gaps = 53/377 (14%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVTVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 TIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +            HF          +  H            IG ++ GKV
Sbjct: 269 RERVSLSLKATQEDP------WRHF----------ARTHA-----------IGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 936 LSLKTV---FIDRFREA 949
           LSLK     + D F  A
Sbjct: 360 LSLKQANEDYTDEFDPA 376



 Score = 44.3 bits (103), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 114/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R +   +   
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAW---LEQT 194

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +   + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 195  QSEVRSEFLNQ-LQKGTIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|257056579|ref|YP_003134411.1| 30S ribosomal protein S1 [Saccharomonospora viridis DSM 43017]
 gi|256586451|gb|ACU97584.1| SSU ribosomal protein S1P [Saccharomonospora viridis DSM 43017]
          Length = 495

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 189/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S + + + V++IG++  F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 11   SSQANQVAVNDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 70

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL   KE K  RL+L   +        + 
Sbjct: 71   SRELSIKHDVDPAEV------VAVGDEVEALVL--QKEDKEGRLILSKKR-----AQYER 117

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 118  AWGTIEELKEKDEPVRGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE- 174

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L+  
Sbjct: 175  ---LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF-------------LNALAKG 215

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+  
Sbjct: 216  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 274

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 275  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 328

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  E + + G +V VK++ +D E+RRISL +K +
Sbjct: 329  ISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQA 371



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 146/362 (40%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 44  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKEDKE 103

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 104 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGF----LP---- 155

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 156 ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKG 215

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 216 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 274

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 275 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 307

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G+ +   ++D+    R + LS
Sbjct: 308 TKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLS 367

Query: 938 LK 939
           LK
Sbjct: 368 LK 369



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 42  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKED 101

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 102 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 157

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 158 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 213

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 214 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 267

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 268 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 323

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 842
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    S DA F
Sbjct: 324 EGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQANEGYSPDAEF 381


>gi|400537313|ref|ZP_10800846.1| 30S ribosomal protein S1 [Mycobacterium colombiense CECT 3035]
 gi|400329342|gb|EJO86842.1| 30S ribosomal protein S1 [Mycobacterium colombiense CECT 3035]
          Length = 478

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 49.3 bits (116), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 147/379 (38%), Gaps = 49/379 (12%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 644 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 933
            GKV +   FG  V  EE  +    I+     H ++    V  G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRR 357

Query: 934 VDLSLKTV---FIDRFREA 949
           + LSLK     + D F  A
Sbjct: 358 ISLSLKQANEDYTDEFDPA 376



 Score = 43.9 bits (102), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 111/256 (43%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----Q 193

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 194  TQSEVRSEFLNQLQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  IG--QIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|269127063|ref|YP_003300433.1| RNA binding S1 domain-containing protein [Thermomonospora curvata DSM
            43183]
 gi|268312021|gb|ACY98395.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183]
          Length = 487

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 186/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSAEEFLAAIDETIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPHEV------VKVGDHVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+    T S    T ++T          L    + +G 
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLE---QTQSEVRQTFLNT----------LQKGQVRKGV 218

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 219  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSL 277

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      Q      +  H +G +V G++ ++  +G F+ +E   + GL H+SEL+E
Sbjct: 278  SLKATQEDPWQQ-----FARTHQIGQVVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAE 331

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E + + G+++ VKI+ +D ++RRISL +K +
Sbjct: 332  RHVEIPEQVVQVGDEIFVKIIDIDLDRRRISLSLKQA 368



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 153/351 (43%), Gaps = 29/351 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  KVG  +   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDHVEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMERERVSLSLKATQEDPWQQF---ARTHQIGQVVPGRVTKLVPFGAFVRVEEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           G    S+  +       +   VG  +   I+D++ +  RI+LSLKQ+  ++
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLDRRRISLSLKQANETA 372



 Score = 45.1 bits (105), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 133/298 (44%), Gaps = 43/298 (14%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGRE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH---EGDIVGGRISKILS 1272
            +   ++ ++K +  + L  R + +          ++  QTF++   +G +  G +S I++
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRQTFLNTLQKGQVRKGVVSSIVN 224

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
               G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LS
Sbjct: 225  F--GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERE---RVSLS 278

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
            L+++ +                P +   +   +    +V G V  +   G F+ +   ++
Sbjct: 279  LKATQE---------------DPWQQFARTHQI--GQVVPGRVTKLVPFGAFVRVEEGIE 321

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
              V +S L++ +VE PE+   +G  +  +++ ++   +R+ ++LK ++       E N
Sbjct: 322  GLVHISELAERHVEIPEQVVQVGDEIFVKIIDIDLDRRRISLSLKQANETALGVDEEN 379


>gi|332637853|ref|ZP_08416716.1| SSU ribosomal protein S1P [Weissella cibaria KACC 11862]
          Length = 410

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 144/271 (53%), Gaps = 31/271 (11%)

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
            DIV   +++++ G  GLVV +   + G V  + ++N  V D L+ Y +GQ ++ K++EI+
Sbjct: 114  DIVEAPVTQVVKG--GLVVDV-EGVRGFVPASMIENRFVQD-LNQY-KGQTIRAKIIEIN 168

Query: 1321 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1380
                    + LS R   D ++   S+ L+              +LS   +V+G V  +T+
Sbjct: 169  AA---DSRLILSRR---DVLNEERSAALA----------RVFNELSVGDVVEGKVARMTN 212

Query: 1381 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  +R+ +++K + 
Sbjct: 213  FGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKATQ 271

Query: 1441 SRT--ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
                 A+ SE         G ++ G +KRV  +G F+ +    + GL HVS++S  H+ N
Sbjct: 272  PGPWEAAASEAPE------GTVLEGTVKRVVDFGAFVEV-FPGVEGLVHVSQISHKHIAN 324

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
               + +AG+KVKVK+L+V+ +K+R+SL +K+
Sbjct: 325  PSDVLKAGDKVKVKVLEVNPDKQRLSLSIKA 355



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1472
            G+ +  +++ +     R+ ++ +   ++ R+A+ + + N   L VGD+V G++ R+ ++G
Sbjct: 157  GQTIRAKIIEINAADSRLILSRRDVLNEERSAALARVFN--ELSVGDVVEGKVARMTNFG 214

Query: 1473 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             FI +   +  GL HVSE+S + V     +   GE VKVK+L +D EK RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKAT 270



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 18/254 (7%)

Query: 407 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           V DI  ++ V +V +G GL++D+       PA    S +    V+ L  +YK G  +R +
Sbjct: 112 VDDIV-EAPVTQVVKG-GLVVDVEGVRGFVPA----SMIENRFVQDL-NQYK-GQTIRAK 163

Query: 467 ILGFRHLEGLAT----GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
           I+     +         +L       L    +++  G VV+GKV  + +FGA +   GGV
Sbjct: 164 IIEINAADSRLILSRRDVLNEERSAALARVFNELSVGDVVEGKVARMTNFGAFIDL-GGV 222

Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSY 580
             L  +  +S   + +P     VG ++  +VLG+  + +RI+++ K T      A  S  
Sbjct: 223 DGLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKATQPGPWEAAASEA 282

Query: 581 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640
            E T   +  G + ++   G FV  + GV+G    S++       PS +   G  VK ++
Sbjct: 283 PEGT---VLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKV 339

Query: 641 MSSIPASRRINLSF 654
           +   P  +R++LS 
Sbjct: 340 LEVNPDKQRLSLSI 353



 Score = 43.9 bits (102), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 23/192 (11%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD+V G+++++ +   G  + +G  + G VH +E+ +  VS P      G+ VK KVL +
Sbjct: 200  GDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEDVKVKVLGL 256

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                     + LS++++                  PG       +     +++G VK V 
Sbjct: 257  DPEKE---RISLSIKAT-----------------QPGPWEAAASEAPEGTVLEGTVKRVV 296

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
              G F+ +   ++  V +S +S  ++ +P      G  V  +VL V P  +R+ +++K  
Sbjct: 297  DFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSLSIKAL 356

Query: 1440 DSRTASQSEINN 1451
            +   A +   +N
Sbjct: 357  EEAPAREEGQSN 368



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 30/230 (13%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL-ADHLEHAT-VMKSVIKPGYEF 724
           VK+G +V G V  +     V+  I     +G IP   L AD   +   ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELTADRDANVNDLVKVGDVLDLVV 77

Query: 725 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
              +  D E  + LLS +   + + +     AS  + + +V   V  +++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEG- 134

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS +             
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRD------------ 180

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
              L EE+ A L          +      +G V+EGKV    +FG  +  
Sbjct: 181 --VLNEERSAALA---------RVFNELSVGDVVEGKVARMTNFGAFIDL 219



 Score = 41.2 bits (95), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 149/356 (41%), Gaps = 35/356 (9%)

Query: 494 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           ++VK G VVKG+V+A+D +   IV   G GV+ + P+  ++        +   V   +  
Sbjct: 16  AEVKVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELT------ADRDANVNDLVKV 69

Query: 552 RVLGVKSKRITVTHKKT-----LVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCF 602
             +       T+   K      L K +L    ++ E   +     I    +T++ K G  
Sbjct: 70  GDVLDLVVVSTIGSDKEGGSYLLSKRRLEARRAWEEIASKHNVDDIVEAPVTQVVKGGLV 129

Query: 603 VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTR 660
           V    GV+GF P S +  +   +  + Y  GQ ++ +I+    A  R+ LS   ++   R
Sbjct: 130 VDV-EGVRGFVPASMI-ENRFVQDLNQYK-GQTIRAKIIEINAADSRLILSRRDVLNEER 186

Query: 661 VSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716
            +    V     +G +V G V  +T     + +   G   G +    ++   E  +    
Sbjct: 187 SAALARVFNELSVGDVVEGKVARMTNFGAFIDL---GGVDGLVHVSEISH--ERVSQPSD 241

Query: 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIET 775
           V+  G +   ++L LD E   + LS K +     +   S+A      +V+ G V  +++ 
Sbjct: 242 VLSVGEDVKVKVLGLDPEKERISLSIKATQPGPWEAAASEAPE---GTVLEGTVKRVVDF 298

Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           G FV     + G    S+      A+ S     G  V+  +L+VN +  R++LS+K
Sbjct: 299 GAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSLSIK 354


>gi|357590914|ref|ZP_09129580.1| 30S ribosomal protein S1 [Corynebacterium nuruki S6-4]
          Length = 487

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 184/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEDFLAAVDKTIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDEIDALVLT--KEDKDGRLILSKKR-----AQYERAWGTIE 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++ 
Sbjct: 116  DLKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIG----QELEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 170  KIIELDKQRN---NVVLSRRAWLEETQSAVRSEF-------------LHQLQKGQVRKGV 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVSVGDEVTVEVLDVDLDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E
Sbjct: 273  SLKAT-----QEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAE 326

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HVD  + I   G+ + VK++ +D E+RRISL +K +
Sbjct: 327  RHVDVPDQIVSVGQDLMVKVIDIDLERRRISLSLKQA 363



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVSVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  +  VGQ +  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAERHVDVPDQIVSVGQDLMVKVIDIDLERRRISLSL 360



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 153/355 (43%), Gaps = 33/355 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KDGRLILSKKRAQYERAWGTIEDLKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQELEAKIIELDKQRNNVVLSRRAWLEETQSAVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H + + SV   G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVSV---GDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
           + G    S+  +       +   VGQ +   ++D++ E  RI+LSLKQ+    +D
Sbjct: 315 IEGLVHISELAERHVDVPDQIVSVGQDLMVKVIDIDLERRRISLSLKQADEDYSD 369



 Score = 40.4 bits (93), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 117/287 (40%), Gaps = 46/287 (16%)

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL- 727
           G +V G V  V  + V++ +   GY ++G IP+  L+  ++H      V++ G E D L 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDI---GYKTEGVIPSRELS--IKHDVDPDEVVEVGDEIDALV 88

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           L  +++   L+LS K +    A     D      +  V G V  +++ G  +     L G
Sbjct: 89  LTKEDKDGRLILSKKRAQYERAWGTIEDLKE--KDEPVTGTVIEVVKGGLILDI--GLRG 144

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 847
           F P S     +  DL    Y+GQ + + I++++ +   + LS +++    T ++   E F
Sbjct: 145 FLPASLVEMRRVRDLQP--YIGQELEAKIIELDKQRNNVVLS-RRAWLEETQSAVRSE-F 200

Query: 848 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 907
           L +     LQ                 G V +G V    +FG  V       V G +   
Sbjct: 201 LHQ-----LQK----------------GQVRKGVVSSIVNFGAFVDL---GGVDGLVHVS 236

Query: 908 QLA-------GATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
           +L+          V  G  +   +LDV      V LSLK    D +R
Sbjct: 237 ELSWKHIDHPSEVVSVGDEVTVEVLDVDLDRERVSLSLKATQEDPWR 283


>gi|392400474|ref|YP_006437074.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis Cp162]
 gi|390531552|gb|AFM07281.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis Cp162]
          Length = 487

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 185/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAVDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G    Q ++ 
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG----QQIEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 170  KIIELDKQRN---NVVLSRRTWLEQTQSEVRSEF-------------LHQLQKGQVRKGV 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++
Sbjct: 273  SLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQ 326

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  + +   G++  VK++ +D E+RRISL +K +
Sbjct: 327  RHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA 363



 Score = 57.8 bits (138), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 360



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRTWLEQTQSEVRSEFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWMEGF 405


>gi|296164500|ref|ZP_06847071.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
            BAA-614]
 gi|295900100|gb|EFG79535.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
            BAA-614]
          Length = 480

 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.7 bits (117), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 48.5 bits (114), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 144/364 (39%), Gaps = 50/364 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 150 ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 936 LSLK 939
           LSLK
Sbjct: 360 LSLK 363



 Score = 43.9 bits (102), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 114/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R +   +   
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAW---LEQT 194

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +   + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 195  QSEVRSEFLNQ-LQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|337290612|ref|YP_004629633.1| 30S ribosomal protein S1 [Corynebacterium ulcerans BR-AD22]
 gi|384515525|ref|YP_005710617.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 809]
 gi|397653858|ref|YP_006494541.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 0102]
 gi|334696726|gb|AEG81523.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 809]
 gi|334698918|gb|AEG83714.1| 30S ribosomal protein S1 [Corynebacterium ulcerans BR-AD22]
 gi|393402814|dbj|BAM27306.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 0102]
          Length = 487

 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 185/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAINDIGSAEDFLAAVDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDQIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G    Q ++ 
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG----QQIEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 170  KIIELDKQRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGV 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL++
Sbjct: 273  SLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQ 326

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  + +   G++  VK++ +D E+RRISL +K +
Sbjct: 327  RHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA 363



 Score = 57.8 bits (138), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVAVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 360



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWMEGF 405


>gi|406031209|ref|YP_006730099.1| 30S ribosomal protein S1 [Mycobacterium indicus pranii MTCC 9506]
 gi|405129756|gb|AFS15011.1| 30S ribosomal protein S1 [Mycobacterium indicus pranii MTCC 9506]
          Length = 480

 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407



 Score = 49.3 bits (116), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 148/381 (38%), Gaps = 53/381 (13%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 644 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 931
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 932 RLVDLSLKTV---FIDRFREA 949
           R + LSLK     + D F  A
Sbjct: 356 RRISLSLKQANEDYTDEFDPA 376



 Score = 43.9 bits (102), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 111/256 (43%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----Q 193

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 194  TQSEVRSEFLNQLQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|237785408|ref|YP_002906113.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758320|gb|ACR17570.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
          Length = 488

 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 175/372 (47%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V K+D++  LL I       + ++   +    +P+E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKHEIDPNEVVE------VGDEIDAL 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEPVTGTVIEVVKG--GLIL 138

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG----QELEAKIIELDKHRN---NVVLSRRAWLEQ 191

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 192  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 237

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H +G
Sbjct: 238  LSWKHIDHPSEVVAVGDEVTVEVLDVDMDRERVSLSLKAT-----QEDPWRVFARTHAIG 292

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   GE+V VK++ +D 
Sbjct: 293  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVNVGEEVMVKVIDIDL 351

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 352  ERRRISLSLKQA 363



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 166/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S    + P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKHEIDPNEVVEVGDEIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQELEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDMDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+  +       +   VG+ V   ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAERHVEVPDQVVNVGEEVMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405



 Score = 40.8 bits (94), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 114/259 (44%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IG+ +   ++ ++K +  + L  R + +     
Sbjct: 136  LILDIGLRGFLPASLVEMRRVRDLQPYIGQELEAKIIELDKHRNNVVLSRRAWLE----- 190

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                 ++    F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 191  --QTQSEVRSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLGG-VDGLVHVSELSWKHIDH 245

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 246  PSEVVAVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRVFAR 287

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G+ V  +
Sbjct: 288  THAI--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVNVGEEVMVK 345

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK +D
Sbjct: 346  VIDIDLERRRISLSLKQAD 364


>gi|379747704|ref|YP_005338525.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
 gi|379755006|ref|YP_005343678.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-02]
 gi|379762496|ref|YP_005348893.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-64]
 gi|387876359|ref|YP_006306663.1| 30S ribosomal protein S1 [Mycobacterium sp. MOTT36Y]
 gi|443306116|ref|ZP_21035904.1| 30S ribosomal protein S1 [Mycobacterium sp. H4Y]
 gi|378800068|gb|AFC44204.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
 gi|378805222|gb|AFC49357.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-02]
 gi|378810438|gb|AFC54572.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-64]
 gi|386789817|gb|AFJ35936.1| 30S ribosomal protein S1 [Mycobacterium sp. MOTT36Y]
 gi|442767680|gb|ELR85674.1| 30S ribosomal protein S1 [Mycobacterium sp. H4Y]
          Length = 480

 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    TD      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTDE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407



 Score = 48.9 bits (115), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 148/381 (38%), Gaps = 53/381 (13%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 644 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 931
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLER 355

Query: 932 RLVDLSLKTV---FIDRFREA 949
           R + LSLK     + D F  A
Sbjct: 356 RRISLSLKQANEDYTDEFDPA 376



 Score = 43.9 bits (102), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 114/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R +   +   
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAW---LEQT 194

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +   + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 195  QSEVRSEFLNQ-LQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|41407423|ref|NP_960259.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            K-10]
 gi|118464486|ref|YP_882336.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
 gi|254775602|ref|ZP_05217118.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. avium ATCC
            25291]
 gi|417750612|ref|ZP_12398967.1| ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            S397]
 gi|41395775|gb|AAS03642.1| RpsA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165773|gb|ABK66670.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
 gi|336457775|gb|EGO36769.1| ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            S397]
          Length = 480

 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 143/366 (39%), Gaps = 46/366 (12%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 644 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 933
            GKV +   FG  V  EE  +    I+     H ++    V  G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRR 357

Query: 934 VDLSLK 939
           + LSLK
Sbjct: 358 ISLSLK 363



 Score = 43.9 bits (102), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 111/256 (43%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----Q 193

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 194  TQSEVRSEFLNQLQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|359420845|ref|ZP_09212776.1| 30S ribosomal protein S1 [Gordonia araii NBRC 100433]
 gi|358243118|dbj|GAB10845.1| 30S ribosomal protein S1 [Gordonia araii NBRC 100433]
          Length = 487

 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVTVGDEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDALVKVIDIDLERRRISLSLKQA 365



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 155/391 (39%), Gaps = 50/391 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         ++   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPNEVVTVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAA------ 923
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE    + A       
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDALV 346

Query: 924 -ILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 45.8 bits (107), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 147/354 (41%), Gaps = 31/354 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H      V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPN---EVVTVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDALVKVIDIDLERRRISLSLKQANEDYTE 371



 Score = 40.8 bits (94), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 112/259 (43%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +     
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----- 192

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                 ++    F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 193  --QTQSEVRSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 247

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 248  PNEVVTVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRQFAR 289

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +
Sbjct: 290  THAI--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDALVK 347

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK ++
Sbjct: 348  VIDIDLERRRISLSLKQAN 366


>gi|336441306|gb|AEI54878.1| 30S ribosomal protein S1 [Mycobacterium chelonae]
          Length = 481

 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ R      +V LS R+ L+   S   S+              +  L+  
Sbjct: 169  ---IEAKIIELDRNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLTKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDM 267

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      I  G +TK+   G FVR   G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLVHIS 324

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           EL       P  +  VG     +++      RRI+LS 
Sbjct: 325 ELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLSL 362



 Score = 48.5 bits (114), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 150 ASLVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQTQSEVRSEFLNQLTKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V  G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LK 939
           LK
Sbjct: 362 LK 363


>gi|312198706|ref|YP_004018767.1| RNA binding S1 domain-containing protein [Frankia sp. EuI1c]
 gi|311230042|gb|ADP82897.1| RNA binding S1 domain protein [Frankia sp. EuI1c]
          Length = 493

 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 185/399 (46%), Gaps = 57/399 (14%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 24   VAVNDIGSAEDFLAAVDKTIKFFNDGDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 83

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHV--LSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
                +P E+           AV  HV  L + KE K  RL+L   +        + +   
Sbjct: 84   KHDVDPHEV----------VAVGDHVEALVLQKEDKEGRLILSKKR-----AQYERAWGT 128

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    +
Sbjct: 129  IEKLKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----L 182

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            + K++E+ +      +V LS R+ L+   S   S+              +  L+   I +
Sbjct: 183  EAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LSQLAKGQIRK 226

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV
Sbjct: 227  GVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERV 285

Query: 1433 EVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
             ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   + GL H+SEL
Sbjct: 286  SLSLKATQEDPWRQ-----FARTHAIGQVVPGRVTKLVPFGAFVRVDE-GIEGLVHISEL 339

Query: 1492 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +E HV+  E +   G+++ VK++ +D ++RRISL +K +
Sbjct: 340  AERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA 378



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVAVGDHVEALVLQKEDKE 110

Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  S +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLSQLAKG 222

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 938 LK 939
           LK
Sbjct: 375 LK 376



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 129/289 (44%), Gaps = 37/289 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 123  ERAWGTIEKLKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGRE 181

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         + + +G I  G +S I++   
Sbjct: 182  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRSEFLSQLAKGQIRKGVVSSIVNF-- 235

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 236  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRE---RVSLSLKA 291

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 292  TQE---------------DPWRQFARTHAI--GQVVPGRVTKLVPFGAFVRVDEGIEGLV 334

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1444
             +S L++ +VE PE+   +G  +  +V+ ++   +R+ ++LK ++   A
Sbjct: 335  HISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEAAA 383



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVAVGDHVEALVLQKED 108

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLSQLA 220

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQA 378


>gi|166154319|ref|YP_001654437.1| 30S ribosomal protein S1 [Chlamydia trachomatis 434/Bu]
 gi|166155194|ref|YP_001653449.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|255348460|ref|ZP_05380467.1| 30S ribosomal protein S1 [Chlamydia trachomatis 70]
 gi|255503002|ref|ZP_05381392.1| 30S ribosomal protein S1 [Chlamydia trachomatis 70s]
 gi|301335570|ref|ZP_07223814.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2tet1]
 gi|339625750|ref|YP_004717229.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2c]
 gi|165930307|emb|CAP03793.1| SSU ribosomal protein S1P [Chlamydia trachomatis 434/Bu]
 gi|165931182|emb|CAP06747.1| SSU ribosomal protein S1P [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|339460979|gb|AEJ77482.1| ribosomal protein S1 [Chlamydia trachomatis L2c]
 gi|440525903|emb|CCP51387.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/8200/07]
 gi|440535727|emb|CCP61240.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/795]
 gi|440536617|emb|CCP62131.1| 30S ribosomal protein S1 [Chlamydia trachomatis L1/440/LN]
 gi|440537509|emb|CCP63023.1| 30S ribosomal protein S1 [Chlamydia trachomatis L1/1322/p2]
 gi|440538399|emb|CCP63913.1| 30S ribosomal protein S1 [Chlamydia trachomatis L1/115]
 gi|440539288|emb|CCP64802.1| 30S ribosomal protein S1 [Chlamydia trachomatis L1/224]
 gi|440540178|emb|CCP65692.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2/25667R]
 gi|440541068|emb|CCP66582.1| 30S ribosomal protein S1 [Chlamydia trachomatis L3/404/LN]
 gi|440541956|emb|CCP67470.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/UCH-2]
 gi|440542846|emb|CCP68360.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Canada2]
 gi|440543738|emb|CCP69252.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/LST]
 gi|440544628|emb|CCP70142.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams1]
 gi|440545518|emb|CCP71032.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/CV204]
 gi|440913780|emb|CCP90197.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams2]
 gi|440914670|emb|CCP91087.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams3]
 gi|440915562|emb|CCP91979.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Canada1]
 gi|440916455|emb|CCP92872.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams4]
 gi|440917345|emb|CCP93762.1| 30S ribosomal protein S1 [Chlamydia trachomatis L2b/Ams5]
          Length = 569

 Score = 89.0 bits (219), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 184/401 (45%), Gaps = 63/401 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
                G  ++I   + G +H +E+   KNI   DP    ++G  V+  VL I +       
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV--DPNEVVNKGDEVEVVVLSIQKD-----E 367

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
             ++SL     G+  T  +        P  ++E  E     + V   +KN+T+ G F+ L 
Sbjct: 368  GKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +K        + 
Sbjct: 413  PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
            E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE     IE +   G+
Sbjct: 473  E----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFAKIEDVLSIGD 527

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1548
            KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 528  KVSAKVIKLDPDHKKVSLSIK-EFLAHGGDAGHDAEEESSD 567



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 142/287 (49%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I++ + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 184  ILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  V G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 637 KCRIMSSIPASRRINLSF 654
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 101/475 (21%), Positives = 199/475 (41%), Gaps = 64/475 (13%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 838 TDASFMQEHFLLEEKI-AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            D   ++E + +  ++ A +++  + G+ ++   G      IEG +H S D   +     
Sbjct: 382 WDN--IEEKYPIGLRVTAEIKNLTNYGAFVELEPG------IEGLIHIS-DMSWIKKVSH 432

Query: 897 HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            S+++             + G+ ++A IL V K  + + L +K +  + + E  +
Sbjct: 433 PSELF-------------KKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEA 474


>gi|383824746|ref|ZP_09979918.1| 30S ribosomal protein S1 [Mycobacterium xenopi RIVM700367]
 gi|383336812|gb|EID15207.1| 30S ribosomal protein S1 [Mycobacterium xenopi RIVM700367]
          Length = 486

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVSSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VKVGDKVEALVLT--KEDKDGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE H++  + +   G++V VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHIEVADQVVGVGDEVMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 144/366 (39%), Gaps = 46/366 (12%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            D  I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDKVEALVLTK 93

Query: 644 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKDGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 933
            GKV +   FG  V  EE  +    I+     H ++A   V  G  +   ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELSERHIEVADQVVGVGDEVMVKVIDIDLERRR 357

Query: 934 VDLSLK 939
           + LSLK
Sbjct: 358 ISLSLK 363



 Score = 48.1 bits (113), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 153/354 (43%), Gaps = 31/354 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG ++   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDKVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELSERHIEVADQVVGVGDEVMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|340794195|ref|YP_004759658.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
 gi|340534105|gb|AEK36585.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
          Length = 486

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 173/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +    +P E+ E      IG  V   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVE------IGDEVDAL 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKDGRLILSKKR-----AQYERAWGTIEELKEKDEPVTGTVIEVVKG--GLIL 138

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG----QELEAKIIELDKQRN---NVVLSRRAWLEQ 191

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 192  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 237

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H +G
Sbjct: 238  LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAIG 292

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E H+D  + I   G+ + VK++ +D 
Sbjct: 293  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHIDVPDQIVTVGQDLMVKVIDIDL 351

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 352  ERRRISLSLKQA 363



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 167/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG+  ++G E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEIGDEVDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KDGRLILSKKRAQYERAWGTIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQELEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+  +       +   VGQ +   ++D++ E  RI+LSLKQ+     D  F +
Sbjct: 315 IEGLVHISELAERHIDVPDQIVTVGQDLMVKVIDIDLERRRISLSLKQA-----DEDFTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWMEGF 405


>gi|357018753|ref|ZP_09081016.1| 30S ribosomal protein S1 [Mycobacterium thermoresistibile ATCC 19527]
 gi|356481471|gb|EHI14576.1| 30S ribosomal protein S1 [Mycobacterium thermoresistibile ATCC 19527]
          Length = 478

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VSVGDQVEALVLT--KEDKDGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGRE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE H++  + + + G+ V VK++ +D ++RRISL +K +
Sbjct: 323  ISELSERHIEVPDQVVQVGDDVMVKVIDIDLDRRRISLSLKQA 365



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 143/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDQVEALVLTKEDKD 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G  +   ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHIEVPDQVVQVGDDVMVKVIDIDLDRRRISLS 361

Query: 938 LK 939
           LK
Sbjct: 362 LK 363



 Score = 45.8 bits (107), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG ++   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDQVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGTIEALKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   VG  V   ++D++ +  RI+LSLKQ+
Sbjct: 318 EGLVHISELSERHIEVPDQVVQVGDDVMVKVIDIDLDRRRISLSLKQA 365


>gi|358463314|ref|ZP_09173384.1| RNA binding S1 domain protein [Frankia sp. CN3]
 gi|357070427|gb|EHI80131.1| RNA binding S1 domain protein [Frankia sp. CN3]
          Length = 492

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 178/386 (46%), Gaps = 50/386 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P E+        +G  V   
Sbjct: 49   GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEV------VSVGDHVEAL 102

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 103  VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKLKEEDGVVTGTVIEVVKG--GLIL 153

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 154  DIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRRAWLEQ 206

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L+   I +G V ++ + G F+ L   +D  V +S 
Sbjct: 207  TQSEVRSEF-------------LSQLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 252

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +G
Sbjct: 253  LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIG 307

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             +V G++ ++  +G F+ ++   + GL H+SEL+E HV+  E +   G+++ VK++ +D 
Sbjct: 308  QVVPGKVTKLVPFGAFVRVDE-GIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDL 366

Query: 1519 EKRRISLGMKSSYFKNDADNLQMSSE 1544
            ++RRISL +K +   N+A  L    E
Sbjct: 367  DRRRISLSLKQA---NEASGLAGDGE 389



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKEDKE 110

Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  S +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLSQLAKG 222

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG V+ GKV
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGKV 314

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 938 LK 939
           LK
Sbjct: 375 LK 376



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 149/352 (42%), Gaps = 31/352 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDHVEALVLQKED 108

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLSQLA 220

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGKVTKLVPFGAFVRVDEGI 330

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEAS 382


>gi|433647758|ref|YP_007292760.1| ribosomal protein S1 [Mycobacterium smegmatis JS623]
 gi|433297535|gb|AGB23355.1| ribosomal protein S1 [Mycobacterium smegmatis JS623]
          Length = 481

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S+    + +++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    SVTSPQVAINDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 150/376 (39%), Gaps = 46/376 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 150 ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LKTVFIDRFREANSNR 953
           LK    D   E + ++
Sbjct: 362 LKQANEDYTEEFDPSK 377



 Score = 48.1 bits (113), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407



 Score = 44.3 bits (103), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 111/256 (43%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----Q 193

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 194  TQSEVRSEFLNQLQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S LS+ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|405981074|ref|ZP_11039403.1| 30S ribosomal protein S1 [Actinomyces neuii BVS029A5]
 gi|404393093|gb|EJZ88150.1| 30S ribosomal protein S1 [Actinomyces neuii BVS029A5]
          Length = 490

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 140/281 (49%), Gaps = 32/281 (11%)

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
            +++    E  +V G + +++ G  GL+V IG   +      E++ +    P  G +    
Sbjct: 116  SIEKIKQEDGVVTGTVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 169

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
            ++ K++E+ +      +V LS R+ L+   S   SS L T              L    I
Sbjct: 170  IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSSFLQT--------------LQKGQI 212

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
              G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +
Sbjct: 213  RNGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRE 271

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
            RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+S
Sbjct: 272  RVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHIS 325

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            EL+  HVD  + + + GE++ VK++ +D ++RRISL +K +
Sbjct: 326  ELAVRHVDLPDQVVKVGEEIFVKVIDIDLDRRRISLSLKQA 366



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G +  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   VL 
Sbjct: 207 LQKGQIRNGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLD 265

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 266 VDMDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 322

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +     P  +  VG+ +  +++      RRI+LS 
Sbjct: 323 HISELAVRHVDLPDQVVKVGEEIFVKVIDIDLDRRRISLSL 363



 Score = 44.7 bits (104), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 34/220 (15%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           +++ LD   +N++LS +  L  +  ++ S     +    + +G V +I+  G FV  LG 
Sbjct: 173 KIIELDKNRNNVVLSRRAWLEQTQSEVRSSFLQTLQKGQIRNGVVSSIVNFGAFVD-LGG 231

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+         S+   VGQ V   +LDV+ +  R++LSLK +      A F +
Sbjct: 232 VDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQA-FAR 290

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
            H                           IG V+ GKV +   FG  V  E+  +    I
Sbjct: 291 TH--------------------------AIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHI 324

Query: 905 T-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           +     H  L    V+ G  I   ++D+    R + LSLK
Sbjct: 325 SELAVRHVDLPDQVVKVGEEIFVKVIDIDLDRRRISLSLK 364



 Score = 42.0 bits (97), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 31/259 (11%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM---- 641
           +  G + ++ K G  V    G++GF P S  E+      +P    +VG+ ++ +I+    
Sbjct: 126 VVTGTVIEVVKGGLIVDI--GLRGFLPASLVEMRRVRDLQP----YVGREIEAKIIELDK 179

Query: 642 --SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 699
             +++  SRR  L       R S    ++ G + +GVV  +      V +   G   G +
Sbjct: 180 NRNNVVLSRRAWLEQTQSEVRSSFLQTLQKGQIRNGVVSSIVNFGAFVDL---GGVDGLV 236

Query: 700 PTEHLA-DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-S 757
               L+  H++H + +  V +P     ++L +D +   + LS K     + Q+ P  A +
Sbjct: 237 HVSELSWKHIDHPSEVVEVGQPVTV--EVLDVDMDRERVSLSLK-----ATQEDPWQAFA 289

Query: 758 HIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADL-SKTYYVGQSVRS 814
             H    VV G V  ++  G FVR    + G    S+ AV  +  DL  +   VG+ +  
Sbjct: 290 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAV--RHVDLPDQVVKVGEEIFV 347

Query: 815 NILDVNSETGRITLSLKQS 833
            ++D++ +  RI+LSLKQ+
Sbjct: 348 KVIDIDLDRRRISLSLKQA 366


>gi|239917616|ref|YP_002957174.1| 30S ribosomal protein S1 [Micrococcus luteus NCTC 2665]
 gi|239838823|gb|ACS30620.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665]
          Length = 485

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 187/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS + L    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 10   VAINDIGSAEDLLAAIDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 69

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+        +G  V   VL+  KE K  RL+L   +        DI     +
Sbjct: 70   KHDVDPDEV------VAVGDTVEALVLT--KEDKEGRLILSKKRAQYERAWGDI-----E 116

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++ 
Sbjct: 117  KIKEEDGVVEGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG----QKLEA 170

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+           L K+E      +  G 
Sbjct: 171  KIIELDKNRN---NVVLSRRAWLEQTQSEVRSNF----------LHKLE---KGQVRNGT 214

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 215  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSL 273

Query: 1435 TLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            +LK      A+Q +   L +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+
Sbjct: 274  SLK------ATQEDPWQLFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELA 326

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
              H+D  E +    +++ VK++ +D E+RRISL +K +
Sbjct: 327  SRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSLKQA 364


>gi|385676805|ref|ZP_10050733.1| 30S ribosomal protein S1 [Amycolatopsis sp. ATCC 39116]
          Length = 498

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 186/399 (46%), Gaps = 53/399 (13%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            + + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++  
Sbjct: 14   AQVAVNDIGSEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSREL 73

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+        +G  V   VL   KE K  RL+L   +        + +   
Sbjct: 74   SIKHDVDPGEV------VSVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGT 120

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G +    +
Sbjct: 121  IEELKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----L 174

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            + K++E+ +      +V LS R+ L+   S   S+              +  L+   + +
Sbjct: 175  EAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRK 218

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV
Sbjct: 219  GVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERV 277

Query: 1433 EVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
             ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H+SEL
Sbjct: 278  SLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISEL 331

Query: 1492 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +E HV+  E + + G +V VK++ +D E+RRISL +K +
Sbjct: 332  AERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQA 370



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 153/358 (42%), Gaps = 32/358 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVSVGDEVEALVLQKED 100

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 842
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    +TD  F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRRISLSLKQANEGFTTDTEF 380



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 146/366 (39%), Gaps = 46/366 (12%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            D  I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++  
Sbjct: 39  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVSVGDEVEALVLQK 98

Query: 644 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P
Sbjct: 99  EDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP 154

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
               A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 155 ----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNA 210

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LD
Sbjct: 211 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 269

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 270 VDMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIV 302

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 933
            GKV +   FG  V  EE  +    I+     H ++    V+ G+ +   ++D+    R 
Sbjct: 303 PGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVIDIDLERRR 362

Query: 934 VDLSLK 939
           + LSLK
Sbjct: 363 ISLSLK 368



 Score = 44.3 bits (103), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 117/266 (43%), Gaps = 34/266 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +     ++
Sbjct: 143  LILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY----LEQ 198

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 199  TQSEVRSEFLNALAKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 255

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++ +                P +   +   
Sbjct: 256  VVEVGQEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRQFARTHA 297

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +G  V  +V+ 
Sbjct: 298  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMVKVID 355

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEIN 1450
            ++   +R+ ++LK ++    + +E +
Sbjct: 356  IDLERRRISLSLKQANEGFTTDTEFD 381


>gi|429328605|gb|AFZ80365.1| hypothetical protein BEWA_032180 [Babesia equi]
          Length = 649

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 126/522 (24%), Positives = 221/522 (42%), Gaps = 79/522 (15%)

Query: 87  KKNKKKKKKTERKANETV-----DDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVV 141
           KK++K+ KK +     TV     D   S   D  S + PR      L+ I+ G  + G V
Sbjct: 19  KKDRKQIKKQKALGEPTVVESTNDKPPSDALDKFSYRTPR------LETITVGSLVLGSV 72

Query: 142 AEVNEKDLVICLPGGLRGLARAADAL-DPILDNEIEANEDNLLPTIFHVGQLVSCIVLQL 200
           A V    + +     + G  + AD + DP       A +   +P  F +G  V C VL  
Sbjct: 73  ALVTSTGIRVHTLNNIVGFVKNADMVEDP-------AVKTASVP--FSIGSNVVCYVL-- 121

Query: 201 DDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHF------GL 254
                E+   ++ LS++ SL+ + LS   +  G++L + V S +DHG ++ F      GL
Sbjct: 122 -----EVKNGQLVLSMKPSLINRYLSFGNLAPGVLLPSTVISHQDHGVMVSFNVEDKNGL 176

Query: 255 PSFTGFLPRNNLAENSGIDVKPGLLLQG--------VVRSIDRTRKVV-----YLSSDPD 301
             F  +  R +  E +   V   L+ +         VV S++  RK+V     +L   P 
Sbjct: 177 EGFVMYDERED-GEEARESVVSELVKRYPVSSTAYVVVTSVNEERKIVKCKWPWLHKSPV 235

Query: 302 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSI----------LENGVMLSFLTYFTGTVDI 351
           +++         +S D + PG+++   V  +          L  G  +S L   +  +  
Sbjct: 236 SINN-------PLSFDAVKPGLLLHGEVSKVHEKSLDYGLSLPTGYTISCLGSLSAYIPA 288

Query: 352 FHLQNTFPTTNWKNDYNQ---HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV-KV 407
                +F  ++  +D ++   H KV AR+ ++D   + + ++L  +L+  + P  H  K 
Sbjct: 289 SDSLESFKDSDEASDSHEPSMHDKVTARVTYIDSAEKRIHVSLLSHLIKWKGPSGHARKA 348

Query: 408 GDIYDQSKVVR--VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE-------KKYK 458
             + +  KVV+   + GL LL++  S   +   +  I+DV ++  R ++       K Y 
Sbjct: 349 KGLSNTCKVVKNIPNYGLVLLINNESGEGAEVGFAGINDVIDKS-RDMKIASVLSGKTYA 407

Query: 459 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
            G+    RIL +          LK S          ++  G VV GK+  V + G IV+ 
Sbjct: 408 VGTVHSCRILQYSCFSRWNIVSLKESLLNEQYVDPLELSGGDVVDGKITKVLNNGVIVEI 467

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
              V    P+ H+++  + +   +F VG  L  RVL    +R
Sbjct: 468 STRVHGSVPISHLTQVPLTQIPDRFHVGKTLKLRVLRFDYQR 509


>gi|397670587|ref|YP_006512122.1| 30S ribosomal protein S1 [Propionibacterium propionicum F0230a]
 gi|395141590|gb|AFN45697.1| 30S ribosomal protein S1 [Propionibacterium propionicum F0230a]
          Length = 482

 Score = 88.6 bits (218), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 181/403 (44%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            + + S + V + GS   F    D +I     G  V+G V KVD +  LL I       + 
Sbjct: 5    TTEASTVAVDDFGSPEAFMAAVDATIKYFNDGDIVSGTVVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P ++        +G  +    L   KE K  RL+L   +        + 
Sbjct: 65   SKELSIKHDVDPFDV------VRVGDEI--EALVQQKEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    E  +V G + +++ G  GL+V IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEKIKEEDGVVSGSVIEVVKG--GLIVDIGLRGFLPASLVEMRRVRDLQPYVGME- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S                   +  L   
Sbjct: 169  ---LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVEVGTPVTVEVLEVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +      + LH +G IV G++ ++  +G F+ +    + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWQTFARLHQIGQIVPGKVTKLVPFGAFVRV-GDGIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            VSEL+E HV+  E +   G++V VK++ +D E+RR+SL +K +
Sbjct: 323  VSELAERHVEIPEQVVSVGDEVMVKVIDIDLERRRVSLSLKQA 365



 Score = 45.1 bits (105), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 143/347 (41%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    V P    +VG E+   V   + 
Sbjct: 36  GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFDVVRVGDEIEALVQQKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E     +  G + ++ K G  V    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEKIKEEDG--VVSGSVIEVVKGGLIVDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG  ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 152 LVEMRRVRDLQP----YVGMELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G +  GVV  +      V +   G   G +    L+  H++H   +  V  P     ++
Sbjct: 208 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPNEVVEVGTPVTV--EV 262

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLT 786
           L +D +   + LS K +  +  Q      + +H    +V G V  ++  G FVR    + 
Sbjct: 263 LEVDMDRERVSLSLKATQEDPWQTF----ARLHQIGQIVPGKVTKLVPFGAFVRVGDGIE 318

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   VG  V   ++D++ E  R++LSLKQ+
Sbjct: 319 GLVHVSELAERHVEIPEQVVSVGDEVMVKVIDIDLERRRVSLSLKQA 365


>gi|237802530|ref|YP_002887724.1| 30S ribosomal protein S1 [Chlamydia trachomatis B/Jali20/OT]
 gi|231273764|emb|CAX10545.1| SSU ribosomal protein S1P [Chlamydia trachomatis B/Jali20/OT]
          Length = 569

 Score = 88.6 bits (218), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 184/401 (45%), Gaps = 63/401 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
                G  ++I   + G +H +E+   KNI   DP    ++G  V+  VL I +       
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV--DPNEVVNKGDEVEVVVLSIQKD-----E 367

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
             ++SL     G+  T  +        P  ++E  E     + V   +KN+T+ G F+ L 
Sbjct: 368  GKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +K        + 
Sbjct: 413  PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
            E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE     IE +   G+
Sbjct: 473  E----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFAKIEDVLSTGD 527

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1548
            KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 528  KVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 142/287 (49%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I++ + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 184  ILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  V G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)

Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +   G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSTGDKV 529

Query: 637 KCRIMSSIPASRRINLSF 654
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 41.2 bits (95), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 100/480 (20%), Positives = 188/480 (39%), Gaps = 74/480 (15%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 897 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
                H     +I          + G+ ++A IL V K  + + L +K +  + + E  +
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEA 474


>gi|158317247|ref|YP_001509755.1| 30S ribosomal protein S1 [Frankia sp. EAN1pec]
 gi|158112652|gb|ABW14849.1| RNA binding S1 domain protein [Frankia sp. EAN1pec]
          Length = 493

 Score = 88.6 bits (218), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 179/386 (46%), Gaps = 50/386 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P E+        +G  V   
Sbjct: 49   GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEV------VTVGDHVEAL 102

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 103  VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKLKEEDGVVTGTVIEVVKG--GLIL 153

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 154  DIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRRAWLEQ 206

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L+   I +G V ++ + G F+ L   +D  V +S 
Sbjct: 207  TQSEVRSEF-------------LAQLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 252

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +G
Sbjct: 253  LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIG 307

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             +V G++ ++  +G F+ ++   + GL H+SEL+E HV+  E +   G+++ VK++ +D 
Sbjct: 308  QVVPGRVTKLVPFGAFVRVDE-GIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDL 366

Query: 1519 EKRRISLGMKSSYFKNDADNLQMSSE 1544
            ++RRISL +K +   N+A +L    E
Sbjct: 367  DRRRISLSLKQA---NEASSLVAEGE 389



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKEDKE 110

Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 222

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 938 LK 939
           LK
Sbjct: 375 LK 376



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 150/353 (42%), Gaps = 31/353 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 49  GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVTVGDHVEALVLQKED 108

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKEE-DGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 220

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S+
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEASS 383


>gi|288920743|ref|ZP_06415044.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
 gi|288347871|gb|EFC82147.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
          Length = 492

 Score = 88.6 bits (218), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 177/381 (46%), Gaps = 50/381 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P E+        +G  V   
Sbjct: 49   GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEV------VSVGDEVEAL 102

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 103  VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKLKEEDGVVTGTVIEVVKG--GLIL 153

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 154  DIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRRAWLEQ 206

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L+   I +G V ++ + G F+ L   +D  V +S 
Sbjct: 207  TQSEVRSEF-------------LAQLAKGQIRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 252

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +G
Sbjct: 253  LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIG 307

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             +V G++ ++  +G F+ ++   + GL H+SEL+E HV+  E +   G+++ VK++ +D 
Sbjct: 308  QVVPGRVTKLVPFGAFVRVDE-GIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDL 366

Query: 1519 EKRRISLGMKSSYFKNDADNL 1539
            ++RRISL +K +   N+A  L
Sbjct: 367  DRRRISLSLKQA---NEASAL 384



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  ++      
Sbjct: 51  IVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLQKEDKE 110

Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS        +   + KL     +V+G V  V    +++ +  +G+   ++     
Sbjct: 111 GRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVKGGLILDIGLRGFLPASL----- 165

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 166 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLAKG 222

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            +  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 223 QIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLD 281

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG V+ G+V
Sbjct: 282 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQVVPGRV 314

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  +E  +    I+     H ++    V  G  I   ++D+    R + LS
Sbjct: 315 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLS 374

Query: 938 LK 939
           LK
Sbjct: 375 LK 376



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 151/353 (42%), Gaps = 31/353 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 49  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLQKED 108

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 109 KEGRLILSKKRAQYERAWGTIEKLKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 164

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      + 
Sbjct: 165 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLAQLA 220

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 221 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 274

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    VV G V  ++  G FVR    +
Sbjct: 275 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQVVPGRVTKLVPFGAFVRVDEGI 330

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+  +S 
Sbjct: 331 EGLVHISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEASA 383



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 132/303 (43%), Gaps = 37/303 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 123  ERAWGTIEKLKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGRE 181

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T           + +G I  G +S I++   
Sbjct: 182  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRSEFLAQLAKGQIRKGVVSSIVNF-- 235

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 236  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRE---RVSLSLKA 291

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 292  TQE---------------DPWRQFARTHAI--GQVVPGRVTKLVPFGAFVRVDEGIEGLV 334

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1455
             +S L++ +VE PE+   +G  +  +V+ ++   +R+ ++LK ++  +A   E +     
Sbjct: 335  HISELAERHVEIPEQVVNVGDEILVKVIDIDLDRRRISLSLKQANEASALAGEGDTFDPS 394

Query: 1456 HVG 1458
              G
Sbjct: 395  QYG 397


>gi|163845717|ref|YP_001633761.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
            J-10-fl]
 gi|222523422|ref|YP_002567892.1| RNA binding S1 domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163667006|gb|ABY33372.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447301|gb|ACM51567.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
          Length = 520

 Score = 88.6 bits (218), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 18/212 (8%)

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            S+  G  +T +S      D P K   +++DL P M ++G V ++   G F+ +    D  
Sbjct: 72   SASSGSEATGASFTPVSDDQPHKP-RRLKDLQPGMELEGKVTSIALYGVFVDIGVGRDGL 130

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK----------------T 1438
            V +S +SD  +E+P +   IG  V   V S+EP ++R+ +T++                 
Sbjct: 131  VHISEMSDRRIETPSEVVQIGDTVKVWVKSIEPEARRISLTMRDPARAETPRRARQPQPQ 190

Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
                   + +   L+ L VGD+V G I     +G F  I      GL HVSEL+E  V+ 
Sbjct: 191  QQQPRRQEVDREKLAALRVGDVVEGVITGFAPFGAFADI-GVGKDGLIHVSELAEGRVEK 249

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             E   + GE+ + KIL++D E  RISL ++ +
Sbjct: 250  PEDAVKVGERYQFKILEIDGEAARISLSLRRA 281


>gi|289705499|ref|ZP_06501891.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
 gi|289557728|gb|EFD51027.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
          Length = 485

 Score = 88.6 bits (218), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 187/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS + L    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 10   VAINDIGSAEDLLAAIDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 69

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+        +G  V   VL+  KE K  RL+L   +        DI     +
Sbjct: 70   KHDVDPDEV------VAVGDTVEALVLT--KEDKEGRLILSKKRAQYERAWGDI-----E 116

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++ 
Sbjct: 117  KIKEEDGVVEGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG----QKLEA 170

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+           L K+E      +  G 
Sbjct: 171  KIIELDKNRN---NVVLSRRAWLEQTQSEVRSNF----------LHKLE---KGQVRNGT 214

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 215  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSL 273

Query: 1435 TLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            +LK      A+Q +   L +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+
Sbjct: 274  SLK------ATQEDPWQLFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELA 326

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
              H+D  E +    +++ VK++ +D E+RRISL +K +
Sbjct: 327  SRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSLKQA 364


>gi|377557965|ref|ZP_09787587.1| 30S ribosomal protein S1 [Gordonia otitidis NBRC 100426]
 gi|377524870|dbj|GAB32752.1| 30S ribosomal protein S1 [Gordonia otitidis NBRC 100426]
          Length = 487

 Score = 88.6 bits (218), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +++  + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVDD-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 922
               IG ++ GKV +   FG  V  ++   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDDG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 923 AILDVAKAERLVDLSLK 939
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 48.1 bits (113), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 31/354 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDDGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTE 371



 Score = 40.4 bits (93), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 111/259 (42%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 197

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                       F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 198  V-------RSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 247

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 248  PSEVVTVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRQFAR 289

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +
Sbjct: 290  THAI--GQIVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVEVPDQVVAVGDDAMVK 347

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK ++
Sbjct: 348  VIDIDLERRRISLSLKQAN 366


>gi|367467422|ref|ZP_09467362.1| SSU ribosomal protein S1p [Patulibacter sp. I11]
 gi|365817505|gb|EHN12463.1| SSU ribosomal protein S1p [Patulibacter sp. I11]
          Length = 494

 Score = 88.6 bits (218), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 134/269 (49%), Gaps = 28/269 (10%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            G+ V G + +++ G  GL++ +G   +      +++ +   D          ++CKV+E+
Sbjct: 116  GEPVEGTVIEVVKG--GLIIDLGVRGFLPASLVDIRRVPNLDEYLHT----IIECKVIEL 169

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
            +R      +V LS R+ L+         +             ++ L P +IV+G + N+ 
Sbjct: 170  NRQ---RNNVVLSRRAVLEEERKEQRQAI-------------LDVLQPGVIVEGQISNIV 213

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
              G F+ L+  +D  + +S LS  +V  P +   IG  V  +VL ++   +R+ + LK  
Sbjct: 214  DFGAFVDLN-GIDGLIHISELSWTHVNHPTEVVAIGDTVQVKVLDIDRDRQRISLGLK-- 270

Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
              +T        +   +VGD + G + +V ++G F+ I    + GL H+SEL+  HV++ 
Sbjct: 271  --QTQEDPWQRVVDTYNVGDELEGTVTKVVTFGAFVEI-MEGVEGLVHISELAAHHVESP 327

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
              +   G+ VKVKIL++D ++RR+SL +K
Sbjct: 328  REVVHPGDDVKVKILEIDDDRRRLSLSVK 356



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PG++V+G++  +  FGA V    G+  L  +  +S   +  P +   +G  +  +VL 
Sbjct: 199 LQPGVIVEGQISNIVDFGAFVDL-NGIDGLIHISELSWTHVNHPTEVVAIGDTVQVKVLD 257

Query: 556 VKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           +    +RI++  K+T       ++ +Y    D L   G +TK+   G FV    GV+G  
Sbjct: 258 IDRDRQRISLGLKQTQEDPWQRVVDTY-NVGDEL--EGTVTKVVTFGAFVEIMEGVEGLV 314

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
             SEL       P  + H G  VK +I+      RR++LS
Sbjct: 315 HISELAAHHVESPREVVHPGDDVKVKILEIDDDRRRLSLS 354



 Score = 60.5 bits (145), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
            L  L  G IV GQI  +  +G F+ +   +  GL H+SELS  HV++   +   G+ V+V
Sbjct: 196  LDVLQPGVIVEGQISNIVDFGAFVDLNGID--GLIHISELSWTHVNHPTEVVAIGDTVQV 253

Query: 1512 KILKVDKEKRRISLGMKSS 1530
            K+L +D++++RISLG+K +
Sbjct: 254  KVLDIDRDRQRISLGLKQT 272



 Score = 46.6 bits (109), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 44/227 (19%)

Query: 726 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           +++ L+ + +N++LS +  L     +Q  +    + P  +V G + NI++ G FV   G 
Sbjct: 165 KVIELNRQRNNVVLSRRAVLEEERKEQRQAILDVLQPGVIVEGQISNIVDFGAFVDLNG- 223

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+         ++   +G +V+  +LD++ +  RI+L LKQ+           
Sbjct: 224 IDGLIHISELSWTHVNHPTEVVAIGDTVQVKVLDIDRDRQRISLGLKQT----------- 272

Query: 845 EHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY 901
                               E  W   V+ + +G  +EG V +   FG  V   E   V 
Sbjct: 273 -------------------QEDPWQRVVDTYNVGDELEGTVTKVVTFGAFVEIMEG--VE 311

Query: 902 GFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 941
           G +   +LA   VES       G  ++  IL++    R + LS+K V
Sbjct: 312 GLVHISELAAHHVESPREVVHPGDDVKVKILEIDDDRRRLSLSVKRV 358


>gi|348171102|ref|ZP_08877996.1| 30S ribosomal protein S1 [Saccharopolyspora spinosa NRRL 18395]
          Length = 499

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 129/257 (50%), Gaps = 28/257 (10%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL++ IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R
Sbjct: 143  GGLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRR 195

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + L+   S   S+              +  L    + +G V ++ + G F+ L   +D  
Sbjct: 196  AWLEQTQSEVRSEF-------------LNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGL 241

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      + 
Sbjct: 242  VHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FAR 296

Query: 1455 LH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             H +G IV G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + + G++V +K+
Sbjct: 297  THAIGQIVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVGDEVMIKV 355

Query: 1514 LKVDKEKRRISLGMKSS 1530
            + +D E+RRISL +K +
Sbjct: 356  IDIDLERRRISLSLKQA 372



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 145/362 (40%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 45  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVLQKEDKE 104

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGF----LP---- 156

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 157 ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 216

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 217 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 275

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 276 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 308

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  +E  +    I+     H ++    V+ G  +   ++D+    R + LS
Sbjct: 309 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEVMIKVIDIDLERRRISLS 368

Query: 938 LK 939
           LK
Sbjct: 369 LK 370



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVLQKED 102

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 214

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 324

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 842
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    S D+ F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVGDEVMIKVIDIDLERRRISLSLKQANEGFSPDSEF 382



 Score = 45.8 bits (107), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 120/266 (45%), Gaps = 34/266 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +   +   
Sbjct: 145  LILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAW---LEQT 201

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +   + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 202  QSEVRSEFLNQ-LQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 257

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++ +                P +   +   
Sbjct: 258  VVEVGQEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRQFARTHA 299

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +G  V  +V+ 
Sbjct: 300  I--GQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEVMIKVID 357

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEIN 1450
            ++   +R+ ++LK ++   +  SE +
Sbjct: 358  IDLERRRISLSLKQANEGFSPDSEFD 383


>gi|294055034|ref|YP_003548692.1| 30S ribosomal protein S1 [Coraliomargarita akajimensis DSM 45221]
 gi|293614367|gb|ADE54522.1| ribosomal protein S1 [Coraliomargarita akajimensis DSM 45221]
          Length = 552

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 98/163 (60%), Gaps = 6/163 (3%)

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            V+G V+N+T+ G F+ L   +D  V +S++S    V  P +    G  V   VL V+  S
Sbjct: 362  VRGKVRNLTTYGAFVELEEGIDGMVHVSDMSWTRKVNHPSEVVKKGDEVDAIVLDVDADS 421

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
            +R+ + +K        + E    ++  +GD+V G++ ++ SYG F+ ++N ++ GL H+S
Sbjct: 422  QRISLGMKQLAVDPWDEIE----THFKIGDMVKGKVSKITSYGAFVELDN-DIDGLVHIS 476

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532
            ++SE+ V+ I+ +  +G +V  +++K+DK++RRI L +K++ +
Sbjct: 477  QISEERVEKIKDVLDSGAEVTARVIKIDKDERRIGLSIKAANY 519



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 193/470 (41%), Gaps = 82/470 (17%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRV--L 554
           G +++G+V +    G IV    GV +  P   +     ++P K     VG    F+V  +
Sbjct: 101 GSIIQGRVRSKVKGGLIVSI--GVDSFLPASQID----IQPPKNLDQYVGQTYDFKVVKI 154

Query: 555 GVKSKRITVTHKKTLVKSKL----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            ++ K I V+ ++ + + ++    A+L        R    G +  I  +G FV   +G+ 
Sbjct: 155 NLERKNIVVSRRELIEEQRMEKRRALLEEVKPGDKR---RGQVKNITDYGAFVDL-DGLD 210

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--DDLVK 668
           G    +++       PS M   G+ ++  I+       R++L          E  ++   
Sbjct: 211 GLLHITDMSWGRIQHPSEMVKQGEEIEVVIIEIDRDRERVSLGLKQLADNPWERIEEKYP 270

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
           + S ++G V  + P    V  I +G        E L  H+   +  K + KPG    ++L
Sbjct: 271 ISSTITGKVVNLVPYGAFVE-IEEG-------VEGLV-HVTELSWTKRISKPG----EVL 317

Query: 729 VLDNESSNLLLS-----AKYSLINSAQQL---PSD-ASHIHP-NSVVHGYVCNIIETGCF 778
            +  E   ++L       K SL    +QL   P D A H +P  + V G V N+   G F
Sbjct: 318 RIGEEIQAVVLGIQKEEQKISL--GVRQLDANPWDMARHNYPVGARVRGKVRNLTTYGAF 375

Query: 779 VRFLGRLTGFAPRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           V     + G    S     ++ +  S+    G  V + +LDV++++ RI+L +KQ     
Sbjct: 376 VELEEGIDGMVHVSDMSWTRKVNHPSEVVKKGDEVDAIVLDVDADSQRISLGMKQLAVDP 435

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            D   ++ HF                          IG +++GKV +   +G  V  +  
Sbjct: 436 WDE--IETHFK-------------------------IGDMVKGKVSKITSYGAFVELD-- 466

Query: 898 SDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKT 940
           +D+ G +   Q++   VE       SG+ + A ++ + K ER + LS+K 
Sbjct: 467 NDIDGLVHISQISEERVEKIKDVLDSGAEVTARVIKIDKDERRIGLSIKA 516



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 87/168 (51%), Gaps = 7/168 (4%)

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
            +E++ P    +G VKN+T  G F+ L   LD  + ++++S G ++ P +    G+ +   
Sbjct: 181  LEEVKPGDKRRGQVKNITDYGAFVDLD-GLDGLLHITDMSWGRIQHPSEMVKQGEEIEVV 239

Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
            ++ ++   +RV + LK        + E        +   + G++  +  YG F+ IE   
Sbjct: 240  IIEIDRDRERVSLGLKQLADNPWERIE----EKYPISSTITGKVVNLVPYGAFVEIEE-G 294

Query: 1482 LVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            + GL HV+ELS    +     + R GE+++  +L + KE+++ISLG++
Sbjct: 295  VEGLVHVTELSWTKRISKPGEVLRIGEEIQAVVLGIQKEEQKISLGVR 342



 Score = 41.2 bits (95), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 123/274 (44%), Gaps = 37/274 (13%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            + EG I+ G I +I      +VV IG    G VH +E                 FV    
Sbjct: 17   LEEGSIISGVIIEIRPT--EVVVDIGGKSEGIVHASE-----------------FVDMSE 57

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMIVQGYV 1375
            L+I  T+      E+ L    D      +  +S D     K+ EKI D      I+QG V
Sbjct: 58   LQIGDTI------EVFLEKLED---KEGNPVISYDKAEQKKNWEKIVDNCEEGSIIQGRV 108

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK-EFPIGKLVAGRVLSVEPLSKRVEV 1434
            ++    G  + +   +D+ +  S +    ++ P+  +  +G+    +V+ +    K + V
Sbjct: 109  RSKVKGGLIVSIG--VDSFLPASQID---IQPPKNLDQYVGQTYDFKVVKINLERKNIVV 163

Query: 1435 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
            + +        +     L  +  GD   GQ+K +  YG F+ ++   L GL H++++S  
Sbjct: 164  SRRELIEEQRMEKRRALLEEVKPGDKRRGQVKNITDYGAFVDLDG--LDGLLHITDMSWG 221

Query: 1495 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             + +   + + GE+++V I+++D+++ R+SLG+K
Sbjct: 222  RIQHPSEMVKQGEEIEVVIIEIDRDRERVSLGLK 255


>gi|237804447|ref|YP_002888601.1| 30S ribosomal protein S1 [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231272747|emb|CAX09651.1| SSU ribosomal protein S1P [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 569

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 184/401 (45%), Gaps = 63/401 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
                G  ++I   + G +H +E+   KNI   DP    ++G  V+  VL I +       
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV--DPNEVVNKGDEVEVVVLSIQKD-----E 367

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
             ++SL     G+  T  +        P  ++E  E     + V   +KN+T+ G F+ L 
Sbjct: 368  GKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +K        + 
Sbjct: 413  PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
            E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE     IE +   G+
Sbjct: 473  E----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFAKIEDVLSIGD 527

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1548
            KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 528  KVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHNAEEESSD 567



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 142/287 (49%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I++ + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 184  ILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  V G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 637 KCRIMSSIPASRRINLSF 654
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 41.6 bits (96), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 100/480 (20%), Positives = 188/480 (39%), Gaps = 74/480 (15%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 897 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
                H     +I          + G+ ++A IL V K  + + L +K +  + + E  +
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEA 474


>gi|15604817|ref|NP_219601.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/UW-3/CX]
 gi|255506673|ref|ZP_05382312.1| 30S ribosomal protein S1 [Chlamydia trachomatis D(s)2923]
 gi|385243304|ref|YP_005811150.1| 30S ribosomal protein S1P [Chlamydia trachomatis D-EC]
 gi|385244184|ref|YP_005812028.1| 30S ribosomal protein S1P [Chlamydia trachomatis D-LC]
 gi|385245070|ref|YP_005813893.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/150]
 gi|386262454|ref|YP_005815733.1| 30S ribosomal protein S1P [Chlamydia trachomatis Sweden2]
 gi|389857795|ref|YP_006360037.1| 30S ribosomal protein S1P [Chlamydia trachomatis F/SW4]
 gi|389858668|ref|YP_006360909.1| 30S ribosomal protein S1P [Chlamydia trachomatis E/SW3]
 gi|6831540|sp|O84100.1|RS1_CHLTR RecName: Full=30S ribosomal protein S1
 gi|3328495|gb|AAC67689.1| S1 Ribosomal Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|289525142|emb|CBJ14614.1| SSU ribosomal protein S1P [Chlamydia trachomatis Sweden2]
 gi|296434686|gb|ADH16864.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/150]
 gi|297748227|gb|ADI50773.1| SSU ribosomal protein S1P [Chlamydia trachomatis D-EC]
 gi|297749107|gb|ADI51785.1| SSU ribosomal protein S1P [Chlamydia trachomatis D-LC]
 gi|380249742|emb|CCE13263.1| SSU ribosomal protein S1P [Chlamydia trachomatis F/SW4]
 gi|380250617|emb|CCE12374.1| SSU ribosomal protein S1P [Chlamydia trachomatis E/SW3]
 gi|440525012|emb|CCP50263.1| 30S ribosomal protein S1 [Chlamydia trachomatis K/SotonK1]
 gi|440526794|emb|CCP52278.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/SotonD1]
 gi|440527688|emb|CCP53172.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/SotonD5]
 gi|440528579|emb|CCP54063.1| 30S ribosomal protein S1 [Chlamydia trachomatis D/SotonD6]
 gi|440529470|emb|CCP54954.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/SotonE4]
 gi|440530363|emb|CCP55847.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/SotonE8]
 gi|440531260|emb|CCP56770.1| 30S ribosomal protein S1 [Chlamydia trachomatis F/SotonF3]
 gi|440532151|emb|CCP57661.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/SotonG1]
          Length = 569

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 184/401 (45%), Gaps = 63/401 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
                G  ++I   + G +H +E+   KNI   DP    ++G  V+  VL I +       
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV--DPNEVVNKGDEVEVVVLSIQKD-----E 367

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
             ++SL     G+  T  +        P  ++E  E     + V   +KN+T+ G F+ L 
Sbjct: 368  GKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +K        + 
Sbjct: 413  PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
            E+       VG  + G + ++ ++G F+ ++N  + GL HVSELSE     IE +   G+
Sbjct: 473  EVM----FPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFAKIEDVLSIGD 527

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1548
            KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 528  KVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 142/287 (49%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I++ + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 184  ILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  V G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)

Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
              +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EVMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 637 KCRIMSSIPASRRINLSF 654
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 41.2 bits (95), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 100/463 (21%), Positives = 194/463 (41%), Gaps = 64/463 (13%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 838 TDASFMQEHFLLEEKI-AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            D   ++E + +  ++ A +++  + G+ ++   G      IEG +H S D   +     
Sbjct: 382 WDN--IEEKYPIGLRVTAEIKNLTNYGAFVELEPG------IEGLIHIS-DMSWIKKVSH 432

Query: 897 HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
            S+++             + G+ ++A IL V K  + + L +K
Sbjct: 433 PSELF-------------KKGNTVEAVILSVDKESKKITLGVK 462



 Score = 40.8 bits (94), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 131/584 (22%), Positives = 227/584 (38%), Gaps = 101/584 (17%)

Query: 670  GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL- 728
            G+++ G V  ++ + VVV V  K  S+G IP     D  E  TV       G E +  L 
Sbjct: 52   GAILKGTVVDISKDFVVVDVGLK--SEGVIPMSEFIDSSEGLTV-------GAEVEVYLD 102

Query: 729  -VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
               D+E   +L   K +     +Q     +H    S+V G +   ++ G  V     +  
Sbjct: 103  QTEDDEGKVVLSREKAT---RQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI--GMEA 157

Query: 788  FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 847
            F P S+  + +  +L    YVG+     IL +N +   + +S ++               
Sbjct: 158  FLPGSQIDNKKIKNLDD--YVGKVCEFKILKINVDRRNVVVSRRE--------------L 201

Query: 848  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------EHSDVY 901
            L  E+I+         +EL  +E   IG   +G V    DFGV +  +        +D+ 
Sbjct: 202  LEAERIS-------KKAEL--IEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMT 252

Query: 902  GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK--- 958
                 H      VE    ++  IL V K +  V L LK       +E N     +KK   
Sbjct: 253  WKRIRH--PSEMVELNQELEVIILSVDKEKGRVALGLKQ------KEHNPWEDIEKKYPP 304

Query: 959  -KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYNTQKF---PQK 1013
             KR R              IV+++     +    E    I G   VS+ +  K    P +
Sbjct: 305  GKRVR------------GKIVKLLPYGAFI----EIEEGIEGLIHVSEMSWVKNIVDPNE 348

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
                G  V   V+++      G++ L LK     +T  +     +  Y +G  V AEI  
Sbjct: 349  VVNKGDEVEVVVLSI--QKDEGKISLGLK-----QTKHNPWDNIEEKYPIGLRVTAEIKN 401

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            +      ++   G  G IHI++++  K   V +    FK G TV A I+  S   + KK 
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKK--VSHPSELFKKGNTVEAVIL--SVDKESKKI 457

Query: 1134 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
             L    + P+     E+    +F      +G  ++G V K+    A + +   ++  + +
Sbjct: 458  TLGVKQLTPNPWDEIEV----MF-----PVGSDISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
             + + +P    + +    IG  V+  V+ ++ + K + L ++ F
Sbjct: 509  SELSEKP--FAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKEF 550


>gi|389859545|ref|YP_006361785.1| 30S ribosomal protein S1P [Chlamydia trachomatis F/SW5]
 gi|380248865|emb|CCE14152.1| SSU ribosomal protein S1P [Chlamydia trachomatis F/SW5]
          Length = 569

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 184/401 (45%), Gaps = 63/401 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
                G  ++I   + G +H +E+   KNI   DP    ++G  V+  VL I +       
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV--DPNEVVNKGDEVEVVVLSIQKD-----E 367

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
             ++SL     G+  T  +        P  ++E  E     + V   +KN+T+ G F+ L 
Sbjct: 368  GKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +K        + 
Sbjct: 413  PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
            E+       VG  + G + ++ ++G F+ ++N  + GL HVSELSE     IE +   G+
Sbjct: 473  EVM----FPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFAKIEDVLSIGD 527

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1548
            KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 528  KVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 142/287 (49%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I++ + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 184  ILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  V G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)

Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
              +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EVMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 637 KCRIMSSIPASRRINLSF 654
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 41.2 bits (95), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 100/463 (21%), Positives = 194/463 (41%), Gaps = 64/463 (13%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 838 TDASFMQEHFLLEEKI-AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            D   ++E + +  ++ A +++  + G+ ++   G      IEG +H S D   +     
Sbjct: 382 WDN--IEEKYPIGLRVTAEIKNLTNYGAFVELEPG------IEGLIHIS-DMSWIKKVSH 432

Query: 897 HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
            S+++             + G+ ++A IL V K  + + L +K
Sbjct: 433 PSELF-------------KKGNTVEAVILSVDKESKKITLGVK 462



 Score = 40.8 bits (94), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 131/584 (22%), Positives = 227/584 (38%), Gaps = 101/584 (17%)

Query: 670  GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL- 728
            G+++ G V  ++ + VVV V  K  S+G IP     D  E  TV       G E +  L 
Sbjct: 52   GAILKGTVVDISKDFVVVDVGLK--SEGVIPMSEFIDSSEGLTV-------GAEVEVYLD 102

Query: 729  -VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
               D+E   +L   K +     +Q     +H    S+V G +   ++ G  V     +  
Sbjct: 103  QTEDDEGKVVLSREKAT---RQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI--GMEA 157

Query: 788  FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 847
            F P S+  + +  +L    YVG+     IL +N +   + +S ++               
Sbjct: 158  FLPGSQIDNKKIKNLDD--YVGKVCEFKILKINVDRRNVVVSRRE--------------L 201

Query: 848  LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------EHSDVY 901
            L  E+I+         +EL  +E   IG   +G V    DFGV +  +        +D+ 
Sbjct: 202  LEAERIS-------KKAEL--IEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMT 252

Query: 902  GFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK--- 958
                 H      VE    ++  IL V K +  V L LK       +E N     +KK   
Sbjct: 253  WKRIRH--PSEMVELNQELEVIILSVDKEKGRVALGLKQ------KEHNPWEDIEKKYPP 304

Query: 959  -KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYNTQKF---PQK 1013
             KR R              IV+++     +    E    I G   VS+ +  K    P +
Sbjct: 305  GKRVR------------GKIVKLLPYGAFI----EIEEGIEGLIHVSEMSWVKNIVDPNE 348

Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
                G  V   V+++      G++ L LK     +T  +     +  Y +G  V AEI  
Sbjct: 349  VVNKGDEVEVVVLSI--QKDEGKISLGLK-----QTKHNPWDNIEEKYPIGLRVTAEIKN 401

Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
            +      ++   G  G IHI++++  K   V +    FK G TV A I+  S   + KK 
Sbjct: 402  LTNYGAFVELEPGIEGLIHISDMSWIKK--VSHPSELFKKGNTVEAVIL--SVDKESKKI 457

Query: 1134 FLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFI 1193
             L    + P+     E+    +F      +G  ++G V K+    A + +   ++  + +
Sbjct: 458  TLGVKQLTPNPWDEIEV----MF-----PVGSDISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
             + + +P    + +    IG  V+  V+ ++ + K + L ++ F
Sbjct: 509  SELSEKP--FAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKEF 550


>gi|384566732|ref|ZP_10013836.1| ribosomal protein S1 [Saccharomonospora glauca K62]
 gi|384522586|gb|EIE99781.1| ribosomal protein S1 [Saccharomonospora glauca K62]
          Length = 491

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 129/257 (50%), Gaps = 28/257 (10%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL++ IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R
Sbjct: 141  GGLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRR 193

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + L+   S   S+              +  L+   + +G V ++ + G F+ L   +D  
Sbjct: 194  AYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGL 239

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      + 
Sbjct: 240  VHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FAR 294

Query: 1455 LH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G +V VK+
Sbjct: 295  THAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGGEVMVKV 353

Query: 1514 LKVDKEKRRISLGMKSS 1530
            + +D E+RRISL +K +
Sbjct: 354  IDIDLERRRISLSLKQA 370



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 156/393 (39%), Gaps = 46/393 (11%)

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           ++K++ V    T      AI  +     D  I  G I K+++    +      +G  P  
Sbjct: 12  QAKQVAVNDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSR 71

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLV 673
           EL +    +P+ +  VG  V+  ++       R+ LS      +    + ++L +    V
Sbjct: 72  ELSIKHDVDPAEVVAVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPV 131

Query: 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDN 732
            G V  V    +++ +  +G+    +P    A  +E   V       G E + +++ LD 
Sbjct: 132 RGTVIEVVKGGLILDIGLRGF----LP----ASLVEMRRVRDLQPYVGRELEAKIIELDK 183

Query: 733 ESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPR 791
             +N++LS +  L  +  ++ S+  + +    V  G V +I+  G FV  LG + G    
Sbjct: 184 NRNNVVLSRRAYLEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHV 242

Query: 792 SKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEE 851
           S+         S+   VGQ V   +LDV+ +  R++LSLK +        F + H     
Sbjct: 243 SELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----- 296

Query: 852 KIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----H 906
                                 IG ++ GKV +   FG  V  EE  +    I+     H
Sbjct: 297 ---------------------AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERH 335

Query: 907 HQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
            ++    V+ G  +   ++D+    R + LSLK
Sbjct: 336 VEIPEQVVQVGGEVMVKVIDIDLERRRISLSLK 368



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 41  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKED 100

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 157 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 212

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 322

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS-STDASF 842
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    S DA F
Sbjct: 323 EGLVHISELAERHVEIPEQVVQVGGEVMVKVIDIDLERRRISLSLKQANEGYSPDAEF 380


>gi|376284650|ref|YP_005157860.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 31A]
 gi|371578165|gb|AEX41833.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 31A]
          Length = 506

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 174/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 54   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 107

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 108  VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 158

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +   DP  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 159  DIGLRGFLPASLVEMRRVRDLDPYIG----QQIEAKIIELDKQRN---NVVLSRRAWLEQ 211

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 212  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 257

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H VG
Sbjct: 258  LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAVG 312

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G++  VK++ +D 
Sbjct: 313  QIVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDL 371

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 372  ERRRISLSLKQA 383



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 220 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 277

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 278 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGRVTKLVPFGAFVRVEEG 334

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 335 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 380



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 54  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 113

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 114 KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 169

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 170 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 221

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 222 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 275

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 276 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGRVTKLVPFGAFVR 330

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 331 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 385

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 386 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 425


>gi|308177716|ref|YP_003917122.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117]
 gi|307745179|emb|CBT76151.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117]
          Length = 491

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 184/398 (46%), Gaps = 53/398 (13%)

Query: 1144 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSA 1197
            ++ +++IGS   F    D +I     G  V G V KVD++  LL I    +  +      
Sbjct: 13   VVAINDIGSAEDFLAAVDATIKYFNDGDLVEGTVVKVDHDEVLLDIGYKTEGVI------ 66

Query: 1198 YEPSELQEFQRRFHIGKAVTG----HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
              PS     +     G+ VT       L + KE K  RL+L   +        DI     
Sbjct: 67   --PSRELSIKHDVDPGEVVTVGDSVEALVLTKEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++
Sbjct: 120  EKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG----QEIE 173

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
             K++E+ +      +V LS R+ L+    T S   ST        L K+E      +  G
Sbjct: 174  AKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKLE---KGQVRPG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+
Sbjct: 277  LSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
              HV+  E +   G+++ VK++ +D E+RRISL +K +
Sbjct: 331  VRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 146/365 (40%), Gaps = 46/365 (12%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  +  G + K++     +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDSVEALVLTKE 97

Query: 645 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKIKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 759
              A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 934
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 935 DLSLK 939
            LSLK
Sbjct: 362 SLSLK 366



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           EL +        +  VG  +  +++      RRI+LS 
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSL 365



 Score = 46.2 bits (108), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG+   VG  +   VL  + 
Sbjct: 39  GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDSVEALVLTKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|375293001|ref|YP_005127540.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae INCA 402]
 gi|376293166|ref|YP_005164840.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC02]
 gi|371582672|gb|AEX46338.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae INCA 402]
 gi|372110489|gb|AEX76549.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC02]
          Length = 513

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 174/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 61   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 114

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 115  VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 165

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +   DP  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 166  DIGLRGFLPASLVEMRRVRDLDPYIG----QQIEAKIIELDKQRN---NVVLSRRAWLEQ 218

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 219  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 264

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H VG
Sbjct: 265  LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAVG 319

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G++  VK++ +D 
Sbjct: 320  QIVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDL 378

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 379  ERRRISLSLKQA 390



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 227 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 284

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 285 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGRVTKLVPFGAFVRVEEG 341

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 342 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 387



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 61  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 120

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 121 KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 176

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 177 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 228

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 229 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 282

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 283 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGRVTKLVPFGAFVR 337

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 338 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 392

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 393 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 432


>gi|38233738|ref|NP_939505.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae NCTC 13129]
 gi|419860721|ref|ZP_14383362.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae bv. intermedius
            str. NCTC 5011]
 gi|38199999|emb|CAE49668.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae]
 gi|387983115|gb|EIK56614.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae bv. intermedius
            str. NCTC 5011]
          Length = 486

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 174/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 138

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +   DP  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLDPYIG----QQIEAKIIELDKQRN---NVVLSRRAWLEQ 191

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 192  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 237

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H VG
Sbjct: 238  LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAVG 292

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G++  VK++ +D 
Sbjct: 293  QIVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDL 351

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 352  ERRRISLSLKQA 363



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGRVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 360



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGRVTKLVPFGAFVR 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 366 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|373852974|ref|ZP_09595774.1| ribosomal protein S1 [Opitutaceae bacterium TAV5]
 gi|391229292|ref|ZP_10265498.1| ribosomal protein S1 [Opitutaceae bacterium TAV1]
 gi|372475203|gb|EHP35213.1| ribosomal protein S1 [Opitutaceae bacterium TAV5]
 gi|391218953|gb|EIP97373.1| ribosomal protein S1 [Opitutaceae bacterium TAV1]
          Length = 552

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 186/398 (46%), Gaps = 60/398 (15%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAVTGH 1219
            GQ   G V  + +  A + +   +   L I D ++     PSE+         G+ +   
Sbjct: 183  GQVRKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRIAHPSEM------LKQGEEIQVM 235

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            ++ +N+EK+ + L L+        +T     D ++     G  + G++  ++    G  +
Sbjct: 236  IIEVNREKERVSLGLK--------QTTKNPWDEIEQKFPVGAKIHGKVVNLVPY--GAFI 285

Query: 1280 QIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            +I P + G VH TE+     ++ P      GQ +   VL I +  +    + L LR    
Sbjct: 286  EIEPGVEGLVHITEMSWTKRINKPSEVLRVGQELDAVVLGIQKDDQ---KISLGLRQL-- 340

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
                 N  D+        +H   I        V G V+N+T+ G FI L   +D  V +S
Sbjct: 341  ---EPNPWDMV-------RHNYPI-----GARVHGKVRNMTTYGAFIELEEGIDGMVHVS 385

Query: 1399 NLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL-- 1455
            ++S    V  P +    G  V   VL V+   +R+ + +K        Q  I+  S++  
Sbjct: 386  DMSWTRKVNHPSEVLKKGDEVDAIVLDVDASQQRISLGMK--------QLAIDPWSDIDS 437

Query: 1456 --HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
               +GD+V G + ++ S+G F+ +++  + GL H+S++SE+ +D ++ + + G++V  ++
Sbjct: 438  FFKIGDVVKGTVTKITSFGAFVDLKD-GIDGLVHISQISEERIDKVKDVLKPGQEVTARV 496

Query: 1514 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAI 1551
            +K+D+++RR+ L +K++ +  +    Q++SE  + EA+
Sbjct: 497  IKIDRDERRLGLSIKAANYSPE----QLASETAAYEAL 530



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 131/281 (46%), Gaps = 33/281 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE-- 1308
            +N+ T   EG +  GR+   + G  GL++ IG   +      +++      P    D+  
Sbjct: 88   ENILTKFPEGSVAVGRVKAKVKG--GLIISIGVDAFMPASHIDIQ------PPKNLDQYV 139

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
            GQ    KVL+I++  +   ++ LS R  ++   S    +L             +E + P 
Sbjct: 140  GQTYDFKVLKINQERK---NIVLSRRELIEQQRSEKRRNL-------------LESIEPG 183

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G VKN+T  G FI L   +D  + ++++S G +  P +    G+ +   ++ V   
Sbjct: 184  QVRKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRIAHPSEMLKQGEEIQVMIIEVNRE 242

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
             +RV + LK +      + E        VG  + G++  +  YG FI IE   + GL H+
Sbjct: 243  KERVSLGLKQTTKNPWDEIE----QKFPVGAKIHGKVVNLVPYGAFIEIE-PGVEGLVHI 297

Query: 1489 SELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            +E+S    ++    + R G+++   +L + K+ ++ISLG++
Sbjct: 298  TEMSWTKRINKPSEVLRVGQELDAVVLGIQKDDQKISLGLR 338



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 148/359 (41%), Gaps = 40/359 (11%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PG V KG V  +  FGA +   G +  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 180 IEPGQVRKGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRIAHPSEMLKQGEEIQVMIIE 238

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V  + +R+++  K+T       I   +         HG +  +  +G F+    GV+G  
Sbjct: 239 VNREKERVSLGLKQTTKNPWDEIEQKFPVGAK---IHGKVVNLVPYGAFIEIEPGVEGLV 295

Query: 614 PRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVK--- 668
             +E+       +PS +  VGQ +   ++      ++I+L    ++P      D+V+   
Sbjct: 296 HITEMSWTKRINKPSEVLRVGQELDAVVLGIQKDDQKISLGLRQLEPNPW---DMVRHNY 352

Query: 669 -LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 722
            +G+ V G V  +T     + +      +G     H++D      + H +    V+K G 
Sbjct: 353 PIGARVHGKVRNMTTYGAFIEL-----EEGIDGMVHVSDMSWTRKVNHPS---EVLKKGD 404

Query: 723 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGC 777
           E D + VLD ++S   +S         +QL  D      S      VV G V  I   G 
Sbjct: 405 EVDAI-VLDVDASQQRISL------GMKQLAIDPWSDIDSFFKIGDVVKGTVTKITSFGA 457

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           FV     + G    S+  + +   +      GQ V + ++ ++ +  R+ LS+K +  S
Sbjct: 458 FVDLKDGIDGLVHISQISEERIDKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAANYS 516



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 113/490 (23%), Positives = 207/490 (42%), Gaps = 90/490 (18%)

Query: 1058 KSSYD---VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 1114
            +SS+D    GS+V   ITEI+  E+ +  G    G I   E  D             +IG
Sbjct: 7    ESSFDNLKEGSIVPGVITEIRQNEVVVDIGGKSEGVIPANEFID---------IGELQIG 57

Query: 1115 QTVTARI----------IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
             T+   +          +   +K + KK+  WE     ++LT         F E  V++G
Sbjct: 58   STIEVYVEKLESKNGLPVLSFDKAEQKKN--WE-----NILT--------KFPEGSVAVG 102

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE---PSELQEFQRRFHIGKAVTGHVL 1221
             RV   V         L IS  + A  F+  S  +   P  L ++     +G+     VL
Sbjct: 103  -RVKAKVK------GGLIISIGVDA--FMPASHIDIQPPKNLDQY-----VGQTYDFKVL 148

Query: 1222 SINKEKKLLRLVLRPF-QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
             IN+E+K + L  R   +   S+K       N+   I  G +  G + K ++  G  +  
Sbjct: 149  KINQERKNIVLSRRELIEQQRSEK-----RRNLLESIEPGQVRKG-VVKNITDFGAFIDL 202

Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1340
             G  + G +H T++    ++ P     +G+ ++  ++E++R            R SL G+
Sbjct: 203  DG--MDGLLHITDMSWGRIAHPSEMLKQGEEIQVMIIEVNREKE---------RVSL-GL 250

Query: 1341 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1400
              T  +        P   +E  +       + G V N+   G FI +   ++  V ++ +
Sbjct: 251  KQTTKN--------PWDEIE--QKFPVGAKIHGKVVNLVPYGAFIEIEPGVEGLVHITEM 300

Query: 1401 S-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGD 1459
            S    +  P +   +G+ +   VL ++   +++ + L+  +             N  +G 
Sbjct: 301  SWTKRINKPSEVLRVGQELDAVVLGIQKDDQKISLGLRQLEPNPWDMVR----HNYPIGA 356

Query: 1460 IVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDK 1518
             V G+++ + +YG FI +E   + G+ HVS++S    V++   + + G++V   +L VD 
Sbjct: 357  RVHGKVRNMTTYGAFIELEE-GIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDA 415

Query: 1519 EKRRISLGMK 1528
             ++RISLGMK
Sbjct: 416  SQQRISLGMK 425



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 71/127 (55%), Gaps = 3/127 (2%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            +G+    +VL +    K + ++ +    +  S+   N L ++  G +  G +K +  +G 
Sbjct: 139  VGQTYDFKVLKINQERKNIVLSRRELIEQQRSEKRRNLLESIEPGQVRKGVVKNITDFGA 198

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1533
            FI ++  +  GL H++++S   + +   + + GE+++V I++V++EK R+SLG+K +  K
Sbjct: 199  FIDLDGMD--GLLHITDMSWGRIAHPSEMLKQGEEIQVMIIEVNREKERVSLGLKQTT-K 255

Query: 1534 NDADNLQ 1540
            N  D ++
Sbjct: 256  NPWDEIE 262



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 96/491 (19%), Positives = 189/491 (38%), Gaps = 76/491 (15%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L  S+F+ L       K G +V G +  +     +V   G  + + P     +   ++ 
Sbjct: 4   LLAESSFDNL-------KEGSIVPGVITEIRQNEVVVDIGGKSEGVIPANEFIDIGELQI 56

Query: 540 GKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH 599
           G   +V  E +    G+         +K   K+   IL+ + E +   +  G +    K 
Sbjct: 57  GSTIEVYVEKLESKNGLPVLSFDKAEQK---KNWENILTKFPEGS---VAVGRVKAKVKG 110

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSM-YHVGQVVKCRIMS------SIPASRRINL 652
           G  +    GV  F P S + + P   P ++  +VGQ    +++       +I  SRR  +
Sbjct: 111 GLIISI--GVDAFMPASHIDIQP---PKNLDQYVGQTYDFKVLKINQERKNIVLSRRELI 165

Query: 653 SFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT 712
                  R +  + ++ G +  GVV  +T      ++   G       T+     + H +
Sbjct: 166 EQQRSEKRRNLLESIEPGQVRKGVVKNITDFGA--FIDLDGMDGLLHITDMSWGRIAHPS 223

Query: 713 VMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINS----AQQLPSDASHIHPNSVVHG 767
            M   +K G E   +++ ++ E   + L  K +  N      Q+ P  A        +HG
Sbjct: 224 EM---LKQGEEIQVMIIEVNREKERVSLGLKQTTKNPWDEIEQKFPVGAK-------IHG 273

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRI 826
            V N++  G F+     + G    ++    +R +  S+   VGQ + + +L +  +  +I
Sbjct: 274 KVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRINKPSEVLRVGQELDAVVLGIQKDDQKI 333

Query: 827 TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
           +L L+Q   +  D                    +HN         + IG+ + GKV    
Sbjct: 334 SLGLRQLEPNPWDMV------------------RHN---------YPIGARVHGKVRNMT 366

Query: 887 DFGVVVSFEEHSDVYGFITHHQLA------GATVESGSVIQAAILDVAKAERLVDLSLKT 940
            +G  +  EE  D    ++              ++ G  + A +LDV  +++ + L +K 
Sbjct: 367 TYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDASQQRISLGMKQ 426

Query: 941 VFIDRFREANS 951
           + ID + + +S
Sbjct: 427 LAIDPWSDIDS 437



 Score = 43.9 bits (102), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 130/320 (40%), Gaps = 43/320 (13%)

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
            P +    G+ +   VM +  +    R+ L LK     +T+ +   + +  + VG+ +  +
Sbjct: 222  PSEMLKQGEEI--QVMIIEVNREKERVSLGLK-----QTTKNPWDEIEQKFPVGAKIHGK 274

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
            +  + P    ++   G  G +HITE++  K   +       ++GQ + A ++    K D 
Sbjct: 275  VVNLVPYGAFIEIEPGVEGLVHITEMSWTKR--INKPSEVLRVGQELDA-VVLGIQKDDQ 331

Query: 1131 KKSF-LWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKA 1189
            K S  L +L   P  +              +  IG RV G V  +    A + +   +  
Sbjct: 332  KISLGLRQLEPNPWDMV-----------RHNYPIGARVHGKVRNMTTYGAFIELEEGIDG 380

Query: 1190 QLFILDSAY-----EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             + + D ++      PSE+         G  V   VL ++  ++ + L       G+   
Sbjct: 381  MVHVSDMSWTRKVNHPSEV------LKKGDEVDAIVLDVDASQQRISL-------GMKQL 427

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
             +D  +D + +F   GD+V G ++KI S   G  V +   + G VH +++    +     
Sbjct: 428  AIDPWSD-IDSFFKIGDVVKGTVTKITS--FGAFVDLKDGIDGLVHISQISEERIDKVKD 484

Query: 1305 GYDEGQFVKCKVLEISRTVR 1324
                GQ V  +V++I R  R
Sbjct: 485  VLKPGQEVTARVIKIDRDER 504



 Score = 40.8 bits (94), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 139/322 (43%), Gaps = 56/322 (17%)

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHI 1212
            E    +G ++ G V  +    A + I   ++  + I + ++     +PSE+        +
Sbjct: 262  EQKFPVGAKIHGKVVNLVPYGAFIEIEPGVEGLVHITEMSWTKRINKPSEV------LRV 315

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
            G+ +   VL I K+ + + L LR  +             N    +     +G R+   + 
Sbjct: 316  GQELDAVVLGIQKDDQKISLGLRQLEP------------NPWDMVRHNYPIGARVHGKVR 363

Query: 1273 GVG--GLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
             +   G  +++   + G VH +++     V+ P     +G  V   VL++  + +     
Sbjct: 364  NMTTYGAFIELEEGIDGMVHVSDMSWTRKVNHPSEVLKKGDEVDAIVLDVDASQQ----- 418

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
                R SL GM    + D  +D+D+      KI D     +V+G V  +TS G F+ L  
Sbjct: 419  ----RISL-GMKQL-AIDPWSDIDS----FFKIGD-----VVKGTVTKITSFGAFVDLKD 463

Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD-------SR 1442
             +D  V +S +S+  ++  +     G+ V  RV+ ++   +R+ +++K ++       S 
Sbjct: 464  GIDGLVHISQISEERIDKVKDVLKPGQEVTARVIKIDRDERRLGLSIKAANYSPEQLASE 523

Query: 1443 TASQSEINNLSN---LHVGDIV 1461
            TA+   +N  S+   +++GDI+
Sbjct: 524  TAAYEALNRDSSGDMMNLGDIL 545


>gi|365824972|ref|ZP_09366932.1| 30S ribosomal protein S1 [Actinomyces graevenitzii C83]
 gi|365259160|gb|EHM89155.1| 30S ribosomal protein S1 [Actinomyces graevenitzii C83]
          Length = 487

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 184/393 (46%), Gaps = 45/393 (11%)

Query: 1145 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
            + V++IGS + L    D +I     G  V G V KVD +  LL I    K +  IL    
Sbjct: 14   VAVNDIGSTEELLAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIG--YKTEGVILSREL 71

Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
                  + +    +G  +   VL   KE K  RL+L   +        + +   ++    
Sbjct: 72   SIKHDVDPEEIVAVGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWGQIEKIKE 124

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318
            E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ K++E
Sbjct: 125  EDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIE 178

Query: 1319 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1378
            + +      +V LS R+ L+   S   ++              ++ L    +  G V ++
Sbjct: 179  LDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LQTLQKGQVRSGVVSSI 222

Query: 1379 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
             + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK 
Sbjct: 223  VNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKA 281

Query: 1439 SDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1497
            +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL++ HV+
Sbjct: 282  T-----QEDPWQAFARAHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAQRHVE 335

Query: 1498 NIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
              E + + G++V VK++ +D ++RRISL +K +
Sbjct: 336  VPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQA 368



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 267

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDFDRERVSLSLKATQEDPWQAFARAHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 325 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSL 365



 Score = 47.4 bits (111), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 145/369 (39%), Gaps = 60/369 (16%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G + K+++    +      +G     EL +    +P  +  VG  ++  ++      
Sbjct: 41  IVEGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPEEIVAVGDEIEALVLQKEDKE 100

Query: 648 RRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 699
            R+ LS           +  ++ E+D V  GS++      V    +++ +  +G+    +
Sbjct: 101 GRLLLSKKRAQYERAWGQIEKIKEEDGVVTGSVIE-----VVKGGLILDIGLRGF----L 151

Query: 700 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-AS 757
           P    A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ ++   
Sbjct: 152 P----ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQ 207

Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
            +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L
Sbjct: 208 TLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 266

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
           DV+ +  R++LSLK +      A F + H                           IG V
Sbjct: 267 DVDFDRERVSLSLKATQEDPWQA-FARAH--------------------------AIGQV 299

Query: 878 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKA 930
           + GKV +   FG  V  E+   + G +   +LA   VE        G  +   ++D+   
Sbjct: 300 VPGKVTKLVPFGAFVRVEDG--IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLD 357

Query: 931 ERLVDLSLK 939
            R + LSLK
Sbjct: 358 RRRISLSLK 366



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 151/349 (43%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPEEIVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLLLSKKRAQYERAWGQIEKIKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 265 VLDVDFDRERVSLSLK-----ATQEDPWQAFARAHAIGQVVPGKVTKLVPFGAFVRVEDG 319

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+          +   VG  V   ++D++ +  RI+LSLKQ+
Sbjct: 320 IEGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQA 368



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 132/293 (45%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLTIS--RHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T S    +K  L ILD     + P+ L E +R    + ++G+ 
Sbjct: 113  ERAWGQIEKIKEEDGVVTGSVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGRE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++  + +QT + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLQT-LQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQAFARAHAIG--QVVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G  V  +V+ ++   +R+ ++LK ++      SE
Sbjct: 325  HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLDRRRISLSLKQANEGVDPNSE 377


>gi|385241460|ref|YP_005809300.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/11023]
 gi|296438403|gb|ADH20556.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/11023]
 gi|440534832|emb|CCP60342.1| 30S ribosomal protein S1 [Chlamydia trachomatis E/Bour]
          Length = 569

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 184/401 (45%), Gaps = 63/401 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
                G  ++I   + G +H +E+   KNI   DP    ++G  V+  VL I +       
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV--DPNEVVNKGDEVEVVVLSIQKD-----E 367

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
             ++SL     G+  T  +        P  ++E  E     + V   +KN+T+ G F+ L 
Sbjct: 368  GKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +K        + 
Sbjct: 413  PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
            E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE     IE +   G+
Sbjct: 473  E----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFAKIEDVLSIGD 527

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1548
            KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 528  KVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 142/287 (49%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I++ + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 184  ILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  V G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 637 KCRIMSSIPASRRINLSF 654
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 101/475 (21%), Positives = 199/475 (41%), Gaps = 64/475 (13%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 838 TDASFMQEHFLLEEKI-AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
            D   ++E + +  ++ A +++  + G+ ++   G      IEG +H S D   +     
Sbjct: 382 WDN--IEEKYPIGLRVTAEIKNLTNYGAFVELEPG------IEGLIHIS-DMSWIKKVSH 432

Query: 897 HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            S+++             + G+ ++A IL V K  + + L +K +  + + E  +
Sbjct: 433 PSELF-------------KKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEA 474


>gi|451336997|ref|ZP_21907548.1| SSU ribosomal protein S1p [Amycolatopsis azurea DSM 43854]
 gi|449420339|gb|EMD25826.1| SSU ribosomal protein S1p [Amycolatopsis azurea DSM 43854]
          Length = 499

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 185/400 (46%), Gaps = 53/400 (13%)

Query: 1142 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1191
            P  + +++IGS+  F    D +I     G  V G + KVD +  LL I       + ++ 
Sbjct: 15   PQQVAINDIGSEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRE 74

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +P+E+        +G  V   VL   KE K  RL+L   +        + +  
Sbjct: 75   LSIKHDVDPAEV------VTVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWG 121

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 122  TIEELKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 175

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   S+              +  L+   + 
Sbjct: 176  LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVR 219

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +R
Sbjct: 220  KGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRER 278

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H+SE
Sbjct: 279  VSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISE 332

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+E HV+  E + +    V VK++ +D E+RRISL +K +
Sbjct: 333  LAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQA 372



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 148/368 (40%), Gaps = 52/368 (14%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++   
Sbjct: 42  DGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKE 101

Query: 645 PASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P 
Sbjct: 102 DKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP- 156

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 759
              A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +
Sbjct: 157 ---ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNAL 213

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV
Sbjct: 214 AKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDV 272

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  R++LSLK +        F + H                           IG ++ 
Sbjct: 273 DMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVP 305

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSVIQAAILDVAKAE 931
           GKV +   FG  V  EE   + G +   +LA   VE        +G V+   ++D+    
Sbjct: 306 GKVTKLVPFGAFVRVEE--GIEGLVHISELAERHVEIPEQVVQVNGDVM-VKVIDIDLER 362

Query: 932 RLVDLSLK 939
           R + LSLK
Sbjct: 363 RRISLSLK 370



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 148/353 (41%), Gaps = 31/353 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKED 102

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            G    S+  +       +   V   V   ++D++ E  RI+LSLKQ+    T
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQANEGVT 377



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 116/266 (43%), Gaps = 34/266 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +     ++
Sbjct: 145  LILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY----LEQ 200

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 201  TQSEVRSEFLNALAKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 257

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++ +                P +   +   
Sbjct: 258  VVEVGQEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRQFARTHA 299

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +V+ 
Sbjct: 300  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVMVKVID 357

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEIN 1450
            ++   +R+ ++LK ++     ++E +
Sbjct: 358  IDLERRRISLSLKQANEGVTPETEFD 383


>gi|441510773|ref|ZP_20992675.1| 30S ribosomal protein S1 [Gordonia aichiensis NBRC 108223]
 gi|441445109|dbj|GAC50636.1| 30S ribosomal protein S1 [Gordonia aichiensis NBRC 108223]
          Length = 487

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +++  + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVDD-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 922
               IG ++ GKV +   FG  V  ++   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDDG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 923 AILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.8 bits (112), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 31/354 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDDGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|359778625|ref|ZP_09281888.1| 30S ribosomal protein S1 [Arthrobacter globiformis NBRC 12137]
 gi|359304084|dbj|GAB15717.1| 30S ribosomal protein S1 [Arthrobacter globiformis NBRC 12137]
          Length = 491

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 191/409 (46%), Gaps = 53/409 (12%)

Query: 1144 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1193
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG----QQIE 173

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
             K++E+ +      +V LS R+ L+    T S   ST        L K+E      +  G
Sbjct: 174  AKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKLE---KGQVRPG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+
Sbjct: 277  LSLKAT-----QEDPWQTFAGTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1541
              HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 331  VRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.8 bits (120), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFAGTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           EL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 146/365 (40%), Gaps = 46/365 (12%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKE 97

Query: 645 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 759
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  R++LSLK +       +F   H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFAGTHAL--------------------------GQVVP 301

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 934
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 935 DLSLK 939
            LSLK
Sbjct: 362 SLSLK 366



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  Q     A       VV G V  ++  G FVR    + 
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF---AGTHALGQVVPGKVTKLVPFGAFVRVEDGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|359425923|ref|ZP_09217013.1| 30S ribosomal protein S1 [Gordonia amarae NBRC 15530]
 gi|358238782|dbj|GAB06595.1| 30S ribosomal protein S1 [Gordonia amarae NBRC 15530]
          Length = 491

 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ + +  + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRV-DEGIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVSVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 153/389 (39%), Gaps = 46/389 (11%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 924
               IG ++ GKV +   FG  V  +E  +    I+     H ++    V  G      +
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKV 348

Query: 925 LDVAKAERLVDLSLKTVFIDRFREANSNR 953
           +D+    R + LSLK    D   E + ++
Sbjct: 349 IDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 48.1 bits (113), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407



 Score = 40.4 bits (93), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 112/259 (43%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +     
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----- 192

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                 ++    F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 193  --QTQSEVRSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 247

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 248  PSEVVAVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRQFAR 289

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +
Sbjct: 290  THAI--GQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVSVGDDAMVK 347

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK ++
Sbjct: 348  VIDIDLERRRISLSLKQAN 366


>gi|453363488|dbj|GAC80781.1| 30S ribosomal protein S1 [Gordonia malaquae NBRC 108250]
          Length = 491

 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 184/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +PSE+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VTVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               V+ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---VEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D ++RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 148/375 (39%), Gaps = 46/375 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI ++     D  I  G I K+++    +      +G  P  EL +    +PS +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVTVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  + +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLNQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 924
               IG ++ GKV +   FG  V  EE  +    I+     H ++    V  G      +
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKV 348

Query: 925 LDVAKAERLVDLSLK 939
           +D+    R + LSLK
Sbjct: 349 IDIDLDRRRISLSLK 363



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVTVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ V+ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   VG      ++D++ +  RI+LSLKQ+
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQA 365



 Score = 41.2 bits (95), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 112/262 (42%), Gaps = 34/262 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK V   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLE----Q 193

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 194  TQSEVRSEFLNQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +   +   
Sbjct: 251  VVTVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRQFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSDSRTASQ 1446
            ++   +R+ ++LK ++   A +
Sbjct: 351  IDLDRRRISLSLKQANEDYAEE 372


>gi|227872165|ref|ZP_03990534.1| possible ribosomal protein S1 [Oribacterium sinus F0268]
 gi|227841994|gb|EEJ52255.1| possible ribosomal protein S1 [Oribacterium sinus F0268]
          Length = 367

 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 179/383 (46%), Gaps = 61/383 (15%)

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1259
            L+E  +  H G+ VTG V+S+  ++  L +  +   DGI  ++ D S DN   + T +  
Sbjct: 10   LEESLKSVHAGEIVTGTVISVKPDEIALNIGYK--SDGIMTRS-DYSADNQLDLTTVVSV 66

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD +  ++ K+  G G +V+          H   L++    +    ++E   +  KV+++
Sbjct: 67   GDEIECKVKKVNDGEGQVVLS---------HRDALQSKASEELRKAFEENAILTGKVVQV 117

Query: 1320 SRTVRGTFHVELS-----LRSSLDGMSSTNSSDLS----TDVD------TPGK------- 1357
               V+G  +VE+      + +SL  +S +   DL+     D+        P K       
Sbjct: 118  ---VKGGLNVEVDGARIFVPASL--VSDSFERDLNKYQGQDIQFVITEFNPAKRRIIGDR 172

Query: 1358 -----------HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
                       H +   +L    I  G VKN+T  G FI L    D  + +S +S G +E
Sbjct: 173  KQIMSAMKKEQHDKLFSELKEGDIRTGVVKNLTDFGAFIDLG-GADGLLHISEMSWGRIE 231

Query: 1407 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
            +P+K F  G+ V   VL  E   +R+ +T K  +      +E    S   VG+IV G++ 
Sbjct: 232  NPKKLFKPGQEV--EVLVKEISGERIALTRKFPNENPWKDAE----SKYAVGEIVTGRVA 285

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
            R+  +G FI + +  +  L HVS++S+DHV+    +   G++++ +++ +D +  +ISL 
Sbjct: 286  RMTDFGAFIEL-DKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHKISLS 344

Query: 1527 MKSSYFKNDADNLQMSSEEESDE 1549
            +K+   + + D   +  E  S+E
Sbjct: 345  IKALLPEEEGDVADVDVEAASEE 367



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 15/244 (6%)

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---- 470
           KVV+V +G GL +++    +  PA + +SD  E ++ K +     G  ++  I  F    
Sbjct: 113 KVVQVVKG-GLNVEVDGARIFVPASL-VSDSFERDLNKYQ-----GQDIQFVITEFNPAK 165

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
           R + G    I+ A   E      S++K G +  G V  +  FGA +   GG   L  +  
Sbjct: 166 RRIIGDRKQIMSAMKKEQHDKLFSELKEGDIRTGVVKNLTDFGAFIDL-GGADGLLHISE 224

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
           MS   I  P K FK G E+   V  +  +RI +T K           S YA      I  
Sbjct: 225 MSWGRIENPKKLFKPGQEVEVLVKEISGERIALTRKFPNENPWKDAESKYAVGE---IVT 281

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G + ++   G F+    G+      S++  D   +PS +   GQ ++ R++     + +I
Sbjct: 282 GRVARMTDFGAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHKI 341

Query: 651 NLSF 654
           +LS 
Sbjct: 342 SLSI 345


>gi|116670612|ref|YP_831545.1| 30S ribosomal protein S1 [Arthrobacter sp. FB24]
 gi|116610721|gb|ABK03445.1| SSU ribosomal protein S1P [Arthrobacter sp. FB24]
          Length = 491

 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 191/409 (46%), Gaps = 53/409 (12%)

Query: 1144 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1193
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG----QQIE 173

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
             K++E+ +      +V LS R+ L+    T S   ST        L K+E      +  G
Sbjct: 174  AKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKLE---KGQVRPG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+
Sbjct: 277  LSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1541
              HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 331  VRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKE 97

Query: 645 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 759
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 934
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 935 DLSLK 939
            LSLK
Sbjct: 362 SLSLK 366



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           EL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|119962586|ref|YP_947812.1| 30S ribosomal protein S1 [Arthrobacter aurescens TC1]
 gi|403527278|ref|YP_006662165.1| 30S ribosomal protein S1 [Arthrobacter sp. Rue61a]
 gi|119949445|gb|ABM08356.1| ribosomal protein S1 [Arthrobacter aurescens TC1]
 gi|403229705|gb|AFR29127.1| 30S ribosomal protein S1 [Arthrobacter sp. Rue61a]
          Length = 491

 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 191/409 (46%), Gaps = 53/409 (12%)

Query: 1144 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1193
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VAVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG----QQIE 173

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
             K++E+ +      +V LS R+ L+    T S   ST        L K+E      +  G
Sbjct: 174  AKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKLE---KGQVRPG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+
Sbjct: 277  LSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1541
              HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 331  VRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           EL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVAVGDQVEALVLTKE 97

Query: 645 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 759
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 934
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 935 DLSLK 939
            LSLK
Sbjct: 362 SLSLK 366



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVAVGDQVEALVLTKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|452959839|gb|EME65170.1| 30S ribosomal protein S1 [Amycolatopsis decaplanina DSM 44594]
          Length = 499

 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 185/400 (46%), Gaps = 53/400 (13%)

Query: 1142 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1191
            P  + +++IGS+  F    D +I     G  V G + KVD +  LL I       + ++ 
Sbjct: 15   PQQVAINDIGSEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRE 74

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +P+E+        +G  V   VL   KE K  RL+L   +        + +  
Sbjct: 75   LSIKHDVDPAEV------VTVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWG 121

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 122  TIEELKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 175

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   S+              +  L+   + 
Sbjct: 176  LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVR 219

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +R
Sbjct: 220  KGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRER 278

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H+SE
Sbjct: 279  VSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISE 332

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L+E HV+  E + +    V VK++ +D E+RRISL +K +
Sbjct: 333  LAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQA 372



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 148/368 (40%), Gaps = 52/368 (14%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++   
Sbjct: 42  DGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKE 101

Query: 645 PASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P 
Sbjct: 102 DKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP- 156

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 759
              A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +
Sbjct: 157 ---ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNAL 213

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV
Sbjct: 214 AKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDV 272

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  R++LSLK +        F + H                           IG ++ 
Sbjct: 273 DMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVP 305

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSVIQAAILDVAKAE 931
           GKV +   FG  V  EE   + G +   +LA   VE        +G V+   ++D+    
Sbjct: 306 GKVTKLVPFGAFVRVEE--GIEGLVHISELAERHVEIPEQVVQVNGDVM-VKVIDIDLER 362

Query: 932 RLVDLSLK 939
           R + LSLK
Sbjct: 363 RRISLSLK 370



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 148/353 (41%), Gaps = 31/353 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKED 102

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            G    S+  +       +   V   V   ++D++ E  RI+LSLKQ+    T
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQANEGVT 377



 Score = 42.7 bits (99), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 116/266 (43%), Gaps = 34/266 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +     ++
Sbjct: 145  LILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY----LEQ 200

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 201  TQSEVRSEFLNALAKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 257

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++ +                P +   +   
Sbjct: 258  VVEVGQEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRQFARTHA 299

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +V+ 
Sbjct: 300  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVMVKVID 357

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEIN 1450
            ++   +R+ ++LK ++     ++E +
Sbjct: 358  IDLERRRISLSLKQANEGVTPETEFD 383


>gi|375290806|ref|YP_005125346.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 241]
 gi|376242739|ref|YP_005133591.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae CDCE 8392]
 gi|376245637|ref|YP_005135876.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC01]
 gi|376248430|ref|YP_005140374.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC04]
 gi|376251220|ref|YP_005138101.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC03]
 gi|376254226|ref|YP_005142685.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae PW8]
 gi|376257038|ref|YP_005144929.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae VA01]
 gi|376287654|ref|YP_005160220.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae BH8]
 gi|376290348|ref|YP_005162595.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae C7 (beta)]
 gi|371580477|gb|AEX44144.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 241]
 gi|371584988|gb|AEX48653.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae BH8]
 gi|372103744|gb|AEX67341.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae C7 (beta)]
 gi|372105981|gb|AEX72043.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae CDCE 8392]
 gi|372108267|gb|AEX74328.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC01]
 gi|372112724|gb|AEX78783.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC03]
 gi|372114998|gb|AEX81056.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC04]
 gi|372117310|gb|AEX69780.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae PW8]
 gi|372119555|gb|AEX83289.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae VA01]
          Length = 513

 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 174/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 61   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 114

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 115  VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 165

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +   DP  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 166  DIGLRGFLPASLVEMRRVRDLDPYIG----QQIEAKIIELDKQRN---NVVLSRRAWLEQ 218

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 219  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 264

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H VG
Sbjct: 265  LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAVG 319

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G++  VK++ +D 
Sbjct: 320  QIVPGRVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDL 378

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 379  ERRRISLSLKQA 390



 Score = 57.4 bits (137), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 227 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 284

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 285 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGRVTKLVPFGAFVRVEEG 341

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  + +VG     +++      RRI+LS 
Sbjct: 342 IEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSL 387



 Score = 48.1 bits (113), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 61  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 120

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 121 KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 176

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 177 LVEMRRVRDLDP--------YIGQQIEAKIIELDKQRNNVVLSRRAWLEQTQSEVRSEFL 228

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 229 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 282

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 283 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGRVTKLVPFGAFVR 337

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG      ++D++ E  RI+LSLKQ+     D 
Sbjct: 338 VEEGIEGLVHISELAQRHVEVPDQVVNVGDEAMVKVIDIDLERRRISLSLKQA-----DE 392

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      K  M  S    G+ +          +W+EGF
Sbjct: 393 DYTEE--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 432


>gi|220912560|ref|YP_002487869.1| 30S ribosomal protein S1 [Arthrobacter chlorophenolicus A6]
 gi|219859438|gb|ACL39780.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
          Length = 491

 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 191/409 (46%), Gaps = 53/409 (12%)

Query: 1144 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1193
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG----QQIE 173

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
             K++E+ +      +V LS R+ L+    T S   ST        L K+E      +  G
Sbjct: 174  AKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKLE---KGQVRPG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+
Sbjct: 277  LSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1541
              HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 331  VRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           EL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKE 97

Query: 645 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 759
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 934
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 935 DLSLK 939
            LSLK
Sbjct: 362 SLSLK 366



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|377567051|ref|ZP_09796296.1| 30S ribosomal protein S1 [Gordonia sputi NBRC 100414]
 gi|377525785|dbj|GAB41461.1| 30S ribosomal protein S1 [Gordonia sputi NBRC 100414]
          Length = 489

 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +++  + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVDD-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 922
               IG ++ GKV +   FG  V  ++   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDDG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 923 AILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.8 bits (112), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 31/354 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDDGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|269956314|ref|YP_003326103.1| RNA binding S1 domain-containing protein [Xylanimonas cellulosilytica
            DSM 15894]
 gi|269304995|gb|ACZ30545.1| RNA binding S1 domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 490

 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 186/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IG+ + L    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 12   VAINDIGTAEDLLAAIDATIKNFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 71

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +PSE+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 72   KHDVDPSEV------VSLGDVVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 118

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 119  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----IEA 172

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+    T S   ST + T          L    +  G 
Sbjct: 173  KIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT----------LQKGQVRPGV 216

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 217  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSL 275

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+ 
Sbjct: 276  SLKAT-----QEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAV 329

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +   G++V VK++ +D E+RRISL +K +
Sbjct: 330  RHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQA 366



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 207 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 265

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 266 VDFDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 322

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +     P  +  VGQ V  +++      RRI+LS 
Sbjct: 323 HISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSL 363



 Score = 47.4 bits (111), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 133/293 (45%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 111  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 169

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++ +  +QT + +G +  G +S I++   
Sbjct: 170  IEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRSTFLQT-LQKGQVRPGVVSSIVNF-- 223

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 224  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRE---RVSLSLKA 279

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +    T +   +     PGK                 V  +   G F+ +   ++  V
Sbjct: 280  TQEDPWQTFARTHAIGQVVPGK-----------------VTKLVPFGAFVRVEDGIEGLV 322

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G+ V  +V+ ++   +R+ ++LK ++     +SE
Sbjct: 323  HISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQANEGVDPESE 375



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   +G  +   VL  + 
Sbjct: 37  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSLGDVVEALVLQKED 96

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 153 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 208

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 209 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 262

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 263 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 318

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VGQ V   ++D++ E  RI+LSLKQ+
Sbjct: 319 EGLVHISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQA 366


>gi|76788812|ref|YP_327898.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/HAR-13]
 gi|255310900|ref|ZP_05353470.1| 30S ribosomal protein S1 [Chlamydia trachomatis 6276]
 gi|255317200|ref|ZP_05358446.1| 30S ribosomal protein S1 [Chlamydia trachomatis 6276s]
 gi|376282107|ref|YP_005155933.1| 30S ribosomal protein S1P [Chlamydia trachomatis A2497]
 gi|385239610|ref|YP_005807452.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9768]
 gi|385240530|ref|YP_005808371.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11222]
 gi|385242386|ref|YP_005810225.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9301]
 gi|385245996|ref|YP_005814818.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11074]
 gi|385269750|ref|YP_005812910.1| SSU ribosomal protein S1P [Chlamydia trachomatis A2497]
 gi|76167342|gb|AAX50350.1| SSU ribosomal protein S1P [Chlamydia trachomatis A/HAR-13]
 gi|296435615|gb|ADH17789.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9768]
 gi|296436538|gb|ADH18708.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11222]
 gi|296437475|gb|ADH19636.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/11074]
 gi|297139974|gb|ADH96732.1| 30S ribosomal protein S1 [Chlamydia trachomatis G/9301]
 gi|347974890|gb|AEP34911.1| SSU ribosomal protein S1P [Chlamydia trachomatis A2497]
 gi|371908137|emb|CAX08757.1| SSU ribosomal protein S1P [Chlamydia trachomatis A2497]
 gi|438690015|emb|CCP49272.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/7249]
 gi|438691099|emb|CCP48373.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/5291]
 gi|438692472|emb|CCP47474.1| 30S ribosomal protein S1 [Chlamydia trachomatis A/363]
 gi|440533044|emb|CCP58554.1| 30S ribosomal protein S1 [Chlamydia trachomatis Ia/SotonIa1]
 gi|440533938|emb|CCP59448.1| 30S ribosomal protein S1 [Chlamydia trachomatis Ia/SotonIa3]
          Length = 569

 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 184/401 (45%), Gaps = 63/401 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
                G  ++I   + G +H +E+   KNI   DP    ++G  V+  VL I +       
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV--DPNEVVNKGDEVEVVVLSIQKD-----E 367

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
             ++SL     G+  T  +        P  ++E  E     + V   +KN+T+ G F+ L 
Sbjct: 368  GKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +K        + 
Sbjct: 413  PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
            E    +   VG  + G + ++ ++G F+ ++N  + GL HVSELSE     IE +   G+
Sbjct: 473  E----AMFPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFAKIEDVLSIGD 527

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1548
            KV  K++K+D + +++SL +K  +  +  D    + EE SD
Sbjct: 528  KVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 142/287 (49%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I++ + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 184  ILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  V G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
            + +   +D     G +TKI   G FV   NG++G    SEL   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529

Query: 637 KCRIMSSIPASRRINLSF 654
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 41.6 bits (96), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 100/480 (20%), Positives = 188/480 (39%), Gaps = 74/480 (15%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           S+V PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +    + K +    K T  +    IL+   E +   I  G IT+  K G  V    G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPG 414

Query: 897 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
                H     +I          + G+ ++A IL V K  + + L +K +  + + E  +
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEA 474


>gi|87306426|ref|ZP_01088573.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
 gi|87290605|gb|EAQ82492.1| 30S ribosomal protein S1 [Blastopirellula marina DSM 3645]
          Length = 636

 Score = 88.2 bits (217), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 182/380 (47%), Gaps = 57/380 (15%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKA 1215
            ++ IGQR  G V  + +  A + +   +   L I D ++     P+E+        I   
Sbjct: 216  ELEIGQRRKGVVKNIADFGAFVDLG-GIDGLLHITDMSWGRIGHPTEV------VKIDDE 268

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQ----DGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            V   +L+I+ E++ + L ++  Q    DG+  K               G  V G++  ++
Sbjct: 269  VEVQILNIDHERQKIALGMKQMQPSPWDGVEGKY------------PVGSKVRGQVVNVM 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
            S   G  V++   + G VH +E+     +S P    + G  +   VL I++  +     E
Sbjct: 317  SY--GAFVKLEEGIEGLVHISEMSWTKRISHPSEVVNIGDEIDVVVLGINKEKQ-----E 369

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNVTSKGCFIMLSR 1389
            +SL     GM  T S+             E I++  P   IV+G V+N+T+ G F+ L  
Sbjct: 370  ISL-----GMKQTQSN-----------PWENIKERYPVESIVKGKVRNLTNYGAFVELEE 413

Query: 1390 KLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +D  + +S++S    +  P +    G+ V  +VL++E   +R+ + LK  D    + S 
Sbjct: 414  GIDGLLHVSDMSWTRKIGHPSEMLEKGQEVECKVLNIEEDRRRIALGLKQMDLDPWASSI 473

Query: 1449 INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1508
             +         +V G++ ++ ++G+F+ +E+  L GL H+SEL+++ V+N E + + G+ 
Sbjct: 474  PDKY---QPNQLVKGKVTKITNFGVFVGLED-GLEGLLHISELADEKVENPEDVVKVGDD 529

Query: 1509 VKVKILKVDKEKRRISLGMK 1528
            ++VKIL+VD ++R+I L  K
Sbjct: 530  IEVKILRVDTDERKIGLSRK 549



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 135/348 (38%), Gaps = 39/348 (11%)

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR-- 560
           KG V  +  FGA V   GG+  L  +  MS   I  P +  K+  E+  ++L +  +R  
Sbjct: 224 KGVVKNIADFGAFVDL-GGIDGLLHITDMSWGRIGHPTEVVKIDDEVEVQILNIDHERQK 282

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 620
           I +  K+        +   Y   +      G +  +  +G FV+   G++G    SE+  
Sbjct: 283 IALGMKQMQPSPWDGVEGKYPVGSK---VRGQVVNVMSYGAFVKLEEGIEGLVHISEMSW 339

Query: 621 DPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 675
                 PS + ++G  +   ++      + I+L   MK T+ +  + +K    + S+V G
Sbjct: 340 TKRISHPSEVVNIGDEIDVVVLGINKEKQEISLG--MKQTQSNPWENIKERYPVESIVKG 397

Query: 676 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL-------- 727
            V  +T     V +            E   D L H + M    K G+  + L        
Sbjct: 398 KVRNLTNYGAFVEL------------EEGIDGLLHVSDMSWTRKIGHPSEMLEKGQEVEC 445

Query: 728 --LVLDNESSNLLLSAK-YSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
             L ++ +   + L  K   L   A  +P       PN +V G V  I   G FV     
Sbjct: 446 KVLNIEEDRRRIALGLKQMDLDPWASSIPD---KYQPNQLVKGKVTKITNFGVFVGLEDG 502

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           L G    S+  D +  +      VG  +   IL V+++  +I LS K+
Sbjct: 503 LEGLLHISELADEKVENPEDVVKVGDDIEVKILRVDTDERKIGLSRKR 550



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 11/159 (6%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGVKSK 559
           +VKGKV  + ++GA V+   G+  L  +  MS   +I  P +  + G E+  +VL ++  
Sbjct: 394 IVKGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKIGHPSEMLEKGQEVECKVLNIEED 453

Query: 560 RITVTHKKTLVKSKLAILSSYAEAT-DRL----ITHGWITKIEKHGCFVRFYNGVQGFAP 614
           R     ++  +  K   L  +A +  D+     +  G +TKI   G FV   +G++G   
Sbjct: 454 R-----RRIALGLKQMDLDPWASSIPDKYQPNQLVKGKVTKITNFGVFVGLEDGLEGLLH 508

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
            SEL  +    P  +  VG  ++ +I+      R+I LS
Sbjct: 509 ISELADEKVENPEDVVKVGDDIEVKILRVDTDERKIGLS 547



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 109/487 (22%), Positives = 192/487 (39%), Gaps = 83/487 (17%)

Query: 491 FTHSD-VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP--GKKFKVGA 547
           F H + V+   +V G ++ VD    ++   G  +   P     E +   P  G K KV  
Sbjct: 35  FEHEESVELNKIVDGTILRVDDEFVLIDVGGKSEGSIPRDEWDEEDEDPPKIGDKIKVLV 94

Query: 548 ELVFRVLGVKSK---RITVTHKKTL-VKSKLAILSSYAEATDRLITHGWITKIEKHGCFV 603
           E +    G        IT++ +K   +      +SS  E     +  G + +  K G  V
Sbjct: 95  EDIEDEFGRTDDPHGMITLSKRKAQKIIEWDTTMSSIEEGN---VVEGTVVRKIKGGLLV 151

Query: 604 RFYNGVQGFAPRSELGLDPGCEPSSMY-HVGQVVKCRIMS------SIPASRRINLSFMM 656
               GV  F P S++ +     PS +  ++G+ V+C ++       +I  SRR   S + 
Sbjct: 152 DI--GVNVFLPASQVDI---RRPSDIADYIGKKVECEVLKIDEERRNIVVSRR---SLIE 203

Query: 657 KPTRVSEDDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLE 709
           K  +   D L++   +G    GVV  +      V +   G   G +   H+ D     + 
Sbjct: 204 KKRQKDRDSLLQELEIGQRRKGVVKNIADFGAFVDL---GGIDGLL---HITDMSWGRIG 257

Query: 710 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-IHP-NSVVH 766
           H T    V+K   E + Q+L +D+E   + L  K       Q  P D     +P  S V 
Sbjct: 258 HPT---EVVKIDDEVEVQILNIDHERQKIALGMK-----QMQPSPWDGVEGKYPVGSKVR 309

Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGR 825
           G V N++  G FV+    + G    S+    +R +  S+   +G  +   +L +N E   
Sbjct: 310 GQVVNVMSYGAFVKLEEGIEGLVHISEMSWTKRISHPSEVVNIGDEIDVVVLGINKEKQE 369

Query: 826 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
           I+L +KQ+   S     ++E + +E                         S+++GKV   
Sbjct: 370 ISLGMKQT--QSNPWENIKERYPVE-------------------------SIVKGKVRNL 402

Query: 886 NDFGVVVSFEEHSDVYGFITHHQLA------GATVESGSVIQAAILDVAKAERLVDLSLK 939
            ++G  V  EE  D    ++              +E G  ++  +L++ +  R + L LK
Sbjct: 403 TNYGAFVELEEGIDGLLHVSDMSWTRKIGHPSEMLEKGQEVECKVLNIEEDRRRIALGLK 462

Query: 940 TVFIDRF 946
            + +D +
Sbjct: 463 QMDLDPW 469


>gi|134101930|ref|YP_001107591.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
 gi|291007060|ref|ZP_06565033.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
 gi|133914553|emb|CAM04666.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
          Length = 501

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 28/257 (10%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL++ IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R
Sbjct: 143  GGLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRR 195

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + L+   S   S+              +  L    + +G V ++ + G F+ L   +D  
Sbjct: 196  AWLEQTQSEVRSEF-------------LNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGL 241

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      + 
Sbjct: 242  VHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FAR 296

Query: 1455 LH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             H +G IV G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + + G+ V +K+
Sbjct: 297  THAIGQIVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVGDDVMIKV 355

Query: 1514 LKVDKEKRRISLGMKSS 1530
            + +D E+RRISL +K +
Sbjct: 356  IDIDLERRRISLSLKQA 372



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 144/362 (39%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 45  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVLQKEDKE 104

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++     
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKEKDEPVRGTVIEVVKGGLILDIGLRGFLPASL----- 159

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 160 ---VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 216

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 217 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 275

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 276 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 308

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  +E  +    I+     H ++    V+ G  +   ++D+    R + LS
Sbjct: 309 TKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMIKVIDIDLERRRISLS 368

Query: 938 LK 939
           LK
Sbjct: 369 LK 370



 Score = 47.8 bits (112), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDFVEALVLQKED 102

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--RGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 214

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 324

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 842
            G    S+  +       +   VG  V   ++D++ E  RI+LSLKQ+    T D+ F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVGDDVMIKVIDIDLERRRISLSLKQANEGFTPDSEF 382



 Score = 45.1 bits (105), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 119/266 (44%), Gaps = 34/266 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +   +   
Sbjct: 145  LILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAW---LEQT 201

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +   + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 202  QSEVRSEFLNQ-LQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 257

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++ +                P +   +   
Sbjct: 258  VVEVGQEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRQFARTHA 299

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +G  V  +V+ 
Sbjct: 300  I--GQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMIKVID 357

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEIN 1450
            ++   +R+ ++LK ++      SE +
Sbjct: 358  IDLERRRISLSLKQANEGFTPDSEFD 383


>gi|400974618|ref|ZP_10801849.1| 30S ribosomal protein S1 [Salinibacterium sp. PAMC 21357]
          Length = 488

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  + G V K+D +  LL +       + ++   +    +P+E+       ++G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEV------VNVGDTVEAL 91

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1278
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVE------LIKESDGVVTGSVIEVVKG--GLI 141

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V IG   +      EL+ +    P  G    Q ++ K+LE+ +      +V LS R+ L+
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG----QEIEAKILELDKNRN---NVVLSRRALLE 194

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
               S + +               + +L+   + +G V ++ + G F+ L   +D  V +S
Sbjct: 195  ETQSASRTSF-------------LNNLAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVS 240

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  ++E   +   +G+ V   +L V+   +RV ++LK +      +      +  H +
Sbjct: 241  ELSWKHIEHASEVVEVGQEVTVEILEVDLERERVSLSLKAT-----QEDPWQVFARTHAI 295

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +  G++ ++  +G F+ + +  + GL H+SELS  HV+  E +   G++V VK++ +D
Sbjct: 296  GQVAPGKVTKLVPFGAFVRVAD-GIEGLVHISELSGKHVELAEQVVSVGDEVFVKVIDID 354

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 355  LERRRISLSLKQA 367



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 155/349 (44%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +++G V+ +D    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEVVNVGDTVEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E +D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVELIKE-SDGVVT-GSVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R S  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEETQSASRTSFLNNLA 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D E   + LS K +  +  Q      +  H    V  G V  ++  G FVR    +
Sbjct: 264 ILEVDLERERVSLSLKATQEDPWQVF----ARTHAIGQVAPGKVTKLVPFGAFVRVADGI 319

Query: 786 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+ + G+  +L+ +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGDEVFVKVIDIDLERRRISLSLKQA 367



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 149/362 (41%), Gaps = 40/362 (11%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  +  G + KI++    +      +G  P  EL +    +P+ + +VG  V+  ++   
Sbjct: 37  DGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEVVNVGDTVEALVLQKE 96

Query: 645 PASRRINLSFMMKPTRVSEDD--LVKLG-SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS        +  D  L+K    +V+G V  V    ++V +  +G+    +P 
Sbjct: 97  DKEGRLILSKKRAQYERAWGDVELIKESDGVVTGSVIEVVKGGLIVDIGLRGF----LP- 151

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SH 758
              A  +E   V       G E + ++L LD   +N++LS + +L+   Q     +  ++
Sbjct: 152 ---ASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLS-RRALLEETQSASRTSFLNN 207

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   IL+
Sbjct: 208 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILE 266

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI-IGSV 877
           V+ E  R++LSLK +        F + H       A+ Q +    ++L     F+ +   
Sbjct: 267 VDLERERVSLSLKATQEDPWQV-FARTH-------AIGQVAPGKVTKLVPFGAFVRVADG 318

Query: 878 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
           IEG VH S   G                H +LA   V  G  +   ++D+    R + LS
Sbjct: 319 IEGLVHISELSG---------------KHVELAEQVVSVGDEVFVKVIDIDLERRRISLS 363

Query: 938 LK 939
           LK
Sbjct: 364 LK 365


>gi|325963167|ref|YP_004241073.1| 30S ribosomal protein S1 [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469254|gb|ADX72939.1| SSU ribosomal protein S1P [Arthrobacter phenanthrenivorans Sphe3]
          Length = 492

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 191/409 (46%), Gaps = 53/409 (12%)

Query: 1144 MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFI 1193
            ++ +++IG+   F    D +I     G  V G V KVD +  LL I       + ++   
Sbjct: 13   VVAINDIGTAEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELS 72

Query: 1194 LDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNM 1253
            +    +P ++        +G  V   VL+  KE K  RL+L   +        DI     
Sbjct: 73   IKHDVDPGDV------VSVGDQVEALVLT--KEDKEGRLILSKKRAQYERAWGDI----- 119

Query: 1254 QTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVK 1313
            +    E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++
Sbjct: 120  EKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG----QQIE 173

Query: 1314 CKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
             K++E+ +      +V LS R+ L+    T S   ST        L K+E      +  G
Sbjct: 174  AKIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKLE---KGQVRPG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+
Sbjct: 277  LSLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQM 1541
              HV+  E +   G+++ VK++ +D E+RRISL +K +    DAD+ + 
Sbjct: 331  VRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDADSTEF 379



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           EL +        +  VG  +  +++      RRI+LS       V  D
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQANEGVDAD 375



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKE 97

Query: 645 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 759
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 934
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 935 DLSLK 939
            LSLK
Sbjct: 362 SLSLK 366



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG    VG ++   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGDVVSVGDQVEALVLTKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|108799971|ref|YP_640168.1| 30S ribosomal protein S1 [Mycobacterium sp. MCS]
 gi|119869083|ref|YP_939035.1| 30S ribosomal protein S1 [Mycobacterium sp. KMS]
 gi|126435599|ref|YP_001071290.1| 30S ribosomal protein S1 [Mycobacterium sp. JLS]
 gi|108770390|gb|ABG09112.1| SSU ribosomal protein S1P [Mycobacterium sp. MCS]
 gi|119695172|gb|ABL92245.1| SSU ribosomal protein S1P [Mycobacterium sp. KMS]
 gi|126235399|gb|ABN98799.1| SSU ribosomal protein S1P [Mycobacterium sp. JLS]
          Length = 479

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 173/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 36   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VSVGDEVEAL 89

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 90   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEELKEKDEAVKGTVIEVVKG--GLIL 140

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 141  DIGLRGFLPASLVEMRRVRDLQPYIGKE----IEAKIIELDKNRN---NVVLSRRAWLEQ 193

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    I +G V ++ + G F+ L   +D  V +S 
Sbjct: 194  TQSEVRSEF-------------LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 239

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +    + +  H +G
Sbjct: 240  LSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIG 294

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SELSE HV+  + + + G+   VK++ +D 
Sbjct: 295  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDL 353

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 354  ERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 145/362 (40%), Gaps = 46/362 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 150 ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V+ G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LK 939
           LK
Sbjct: 362 LK 363



 Score = 47.4 bits (111), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELSERHVEVPDQVVQVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDSETNEWLEGF 407



 Score = 43.9 bits (102), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 111/256 (43%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----Q 193

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 194  TQSEVRSEFLNQLQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVTVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S LS+ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|88856205|ref|ZP_01130865.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
 gi|88814524|gb|EAR24386.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
          Length = 488

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  + G V K+D +  LL +       + ++   +    +P+E+       ++G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEV------VNVGDTVEAL 91

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1278
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVE------LIKESDGVVTGSVIEVVKG--GLI 141

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V IG   +      EL+ +    P  G    Q ++ K+LE+ +      +V LS R+ L+
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG----QEIEAKILELDKNRN---NVVLSRRALLE 194

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
               S + +               + +L+   + +G V ++ + G F+ L   +D  V +S
Sbjct: 195  ETQSASRTSF-------------LNNLAKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVS 240

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  ++E   +   +G+ V   +L V+   +RV ++LK +      +      +  H +
Sbjct: 241  ELSWKHIEHASEVVEVGQEVTVEILEVDLERERVSLSLKAT-----QEDPWQVFARTHAI 295

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +  G++ ++  +G F+ + +  + GL H+SELS  HV+  E +   G++V VK++ +D
Sbjct: 296  GQVAPGKVTKLVPFGAFVRVAD-GIEGLVHISELSGKHVELAEQVVSVGDEVFVKVIDID 354

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 355  LERRRISLSLKQA 367



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 155/349 (44%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +++G V+ +D    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEVVNVGDTVEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E +D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVELIKE-SDGVVT-GSVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R S  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEETQSASRTSFLNNLA 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D E   + LS K +  +  Q      +  H    V  G V  ++  G FVR    +
Sbjct: 264 ILEVDLERERVSLSLKATQEDPWQVF----ARTHAIGQVAPGKVTKLVPFGAFVRVADGI 319

Query: 786 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+ + G+  +L+ +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGDEVFVKVIDIDLERRRISLSLKQA 367



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 149/362 (41%), Gaps = 40/362 (11%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  +  G + KI++    +      +G  P  EL +    +P+ + +VG  V+  ++   
Sbjct: 37  DGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPTEVVNVGDTVEALVLQKE 96

Query: 645 PASRRINLSFMMKPTRVSEDD--LVKLG-SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS        +  D  L+K    +V+G V  V    ++V +  +G+    +P 
Sbjct: 97  DKEGRLILSKKRAQYERAWGDVELIKESDGVVTGSVIEVVKGGLIVDIGLRGF----LP- 151

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SH 758
              A  +E   V       G E + ++L LD   +N++LS + +L+   Q     +  ++
Sbjct: 152 ---ASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLS-RRALLEETQSASRTSFLNN 207

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   IL+
Sbjct: 208 LAKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILE 266

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI-IGSV 877
           V+ E  R++LSLK +        F + H       A+ Q +    ++L     F+ +   
Sbjct: 267 VDLERERVSLSLKATQEDPWQV-FARTH-------AIGQVAPGKVTKLVPFGAFVRVADG 318

Query: 878 IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
           IEG VH S   G                H +LA   V  G  +   ++D+    R + LS
Sbjct: 319 IEGLVHISELSG---------------KHVELAEQVVSVGDEVFVKVIDIDLERRRISLS 363

Query: 938 LK 939
           LK
Sbjct: 364 LK 365


>gi|363899147|ref|ZP_09325658.1| hypothetical protein HMPREF9625_00318 [Oribacterium sp. ACB1]
 gi|395209528|ref|ZP_10398622.1| S1 RNA binding domain protein [Oribacterium sp. ACB8]
 gi|361959477|gb|EHL12764.1| hypothetical protein HMPREF9625_00318 [Oribacterium sp. ACB1]
 gi|394705159|gb|EJF12688.1| S1 RNA binding domain protein [Oribacterium sp. ACB8]
          Length = 368

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 183/384 (47%), Gaps = 65/384 (16%)

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1259
            L+E  +  H G+ VTG V+S+  ++  L +  +   DGI  ++ D S DN   + T +  
Sbjct: 10   LEESLKSVHAGEIVTGTVISVKPDEIALNIGYK--SDGIMTRS-DYSADNQLDLTTVVKV 66

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD +  ++ K+  G G +V+          H   L++    +    ++E   +  KV+++
Sbjct: 67   GDEIECKVKKVNDGEGQVVLS---------HRDALQSKASEELRKAFEENAILTGKVVQV 117

Query: 1320 SRTVRGTFHVELS-----LRSSLDGMSSTNSSDLS----TDVD------TPGK------- 1357
               V+G  +VE+      + +SL  +S +   DL+     D+        P K       
Sbjct: 118  ---VKGGLNVEVDGARIFVPASL--VSDSFERDLNKYQGQDIQFVITEFNPAKRRIIGDR 172

Query: 1358 -----------HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
                       H +   +L+   +  G VKN+T  G FI L    D  + +S +S G +E
Sbjct: 173  KQIMSAQKKEQHDKLFSELAEGDVRTGVVKNLTDFGAFIDLG-GADGLLHISEMSWGRIE 231

Query: 1407 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
            +P+K F  G+ V   VL  E   +R+ +T K  +      +E    S   VG+IV G++ 
Sbjct: 232  NPKKLFKPGQEV--EVLVKEISGERIALTRKFPNENPWKDAE----SKYAVGEIVKGKVA 285

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
            R+  +G FI + +  +  L HVS++S+DHV+    +   G++++ +++ +D +  +ISL 
Sbjct: 286  RMTDFGAFIEL-DKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHKISLS 344

Query: 1527 MKSSYFKNDAD----NLQMSSEEE 1546
            +K+   +++ D    ++  +SEEE
Sbjct: 345  IKALLPEDEQDTADVDVAAASEEE 368



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 104/244 (42%), Gaps = 15/244 (6%)

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---- 470
           KVV+V +G GL +++    +  PA + +SD  E ++ K +     G  ++  I  F    
Sbjct: 113 KVVQVVKG-GLNVEVDGARIFVPASL-VSDSFERDLNKYQ-----GQDIQFVITEFNPAK 165

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
           R + G    I+ A   E      S++  G V  G V  +  FGA +   GG   L  +  
Sbjct: 166 RRIIGDRKQIMSAQKKEQHDKLFSELAEGDVRTGVVKNLTDFGAFIDL-GGADGLLHISE 224

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
           MS   I  P K FK G E+   V  +  +RI +T K           S YA      I  
Sbjct: 225 MSWGRIENPKKLFKPGQEVEVLVKEISGERIALTRKFPNENPWKDAESKYAVGE---IVK 281

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G + ++   G F+    G+      S++  D   +PS +   GQ ++ R++     + +I
Sbjct: 282 GKVARMTDFGAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHKI 341

Query: 651 NLSF 654
           +LS 
Sbjct: 342 SLSI 345



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 153/359 (42%), Gaps = 37/359 (10%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGLLLQ 281
           SL++V  G ++T  V S++     L+ G  S  G + R++ + ++ +D    VK G  ++
Sbjct: 13  SLKSVHAGEIVTGTVISVKPDEIALNIGYKS-DGIMTRSDYSADNQLDLTTVVKVGDEIE 71

Query: 282 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 341
             V+ ++     V LS      SK   +  K    + ++ G +V           V+   
Sbjct: 72  CKVKKVNDGEGQVVLSHRDALQSKASEELRKAFEENAILTGKVVQ----------VVKGG 121

Query: 342 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD--PTSRAVGLTLNPYLLHNR 399
           L        IF +  +  + +++ D N+++  + + +  +  P  R + +     ++  +
Sbjct: 122 LNVEVDGARIF-VPASLVSDSFERDLNKYQGQDIQFVITEFNPAKRRI-IGDRKQIMSAQ 179

Query: 400 APPSHVKV------GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
               H K+      GD+  ++ VV+     G  +D+          + IS+++   +   
Sbjct: 180 KKEQHDKLFSELAEGDV--RTGVVKNLTDFGAFIDLGGAD----GLLHISEMSWGRIENP 233

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG-LVFTHSDVKPGMVVKGKVIAVDSF 512
           +K +K G  V V +   + + G    + +    E       S    G +VKGKV  +  F
Sbjct: 234 KKLFKPGQEVEVLV---KEISGERIALTRKFPNENPWKDAESKYAVGEIVKGKVARMTDF 290

Query: 513 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSKRITVTHKKTL 569
           GA ++   G+ AL  +  +S+  + KP    + G E+  RV  L V + +I+++ K  L
Sbjct: 291 GAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHKISLSIKALL 349


>gi|54023865|ref|YP_118107.1| 30S ribosomal protein S1 [Nocardia farcinica IFM 10152]
 gi|54015373|dbj|BAD56743.1| putative ribosomal protein S1 [Nocardia farcinica IFM 10152]
          Length = 487

 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 184/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 4    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 63

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 64   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 110

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 111  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 167

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 168  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 208

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 209  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLD 267

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 268  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 321

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 322  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 364



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 148/377 (39%), Gaps = 50/377 (13%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 24  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 83

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 84  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 143

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 144 RGFLPASL--------VEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 195

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 196 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 254

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 255 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 290

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 922
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 291 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 345

Query: 923 AILDVAKAERLVDLSLK 939
            ++D+    R + LSLK
Sbjct: 346 KVIDIDLERRRISLSLK 362



 Score = 47.8 bits (112), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 35  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 94

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 150

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 151 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 206

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 260

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 261 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 316

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+
Sbjct: 317 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 364



 Score = 41.6 bits (96), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 113/259 (43%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++GK +   ++ ++K +  + L  R + +     
Sbjct: 137  LILDIGLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLE----- 191

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                 ++    F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 192  --QTQSEVRSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 246

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P    + G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 247  PSEVVEVGNEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRQFAR 288

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +
Sbjct: 289  THAI--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVK 346

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK ++
Sbjct: 347  VIDIDLERRRISLSLKQAN 365


>gi|374856887|dbj|BAL59740.1| 30S ribosomal protein S1 [uncultured candidate division OP1
            bacterium]
          Length = 567

 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 189/451 (41%), Gaps = 69/451 (15%)

Query: 727  LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
            +L LD    NL++S +  L    +Q   +  S + P  V+ G + +I++ G FV  +G  
Sbjct: 167  ILELDRRERNLVVSHREYLKELERQKKEELFSKLQPGQVIEGTIKSIVDFGLFVD-IGGF 225

Query: 786  TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
             G   RS+           TY VG  V   +L V+    RI+LS+KQ             
Sbjct: 226  EGLVHRSEISWKDIPVPPNTYKVGDKVTVKVLGVDRSKERISLSIKQ------------- 272

Query: 846  HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 905
                +  I + Q              +  G+   G V    DFG  V  EE  DV G + 
Sbjct: 273  -LRPDPWIGLKQR-------------YPAGTKTTGTVVSLTDFGAFVRIEE--DVEGLVH 316

Query: 906  HHQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKK 958
              +L+          V+ G  ++  +LDV + ER V LS+K V  D + +         +
Sbjct: 317  ISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMKRVQPDPWEKI--------E 368

Query: 959  KRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNG 1018
            ++  E S    VH  V  + +        + L +   ++ + S   ++    P      G
Sbjct: 369  EKYPEGSI---VHGRVTKLADF----GAFVHLEDGVEALLHISEMSWDKVNKPSDVVTEG 421

Query: 1019 QSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLE 1078
            Q + A V+   S ++  ++ L LK + E         K   SY VGS+V+  ITE+K   
Sbjct: 422  QEITAKVIK--SDASKRKIRLSLKELQE-----DPWHKFLESYSVGSIVEGPITELKDFG 474

Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
              +K      G IH++E+ D++     ++    ++GQTV ARII  + +    +  +  L
Sbjct: 475  AFMKITDDVEGLIHVSEITDERIATPADV---LQVGQTVKARIIGINEEKRQVRLSMRNL 531

Query: 1139 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1169
              +  ++T S+ G +       +++G+R+ G
Sbjct: 532  HKQEHLVTSSDAGHEA------ITMGERIKG 556



 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 166/383 (43%), Gaps = 41/383 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++PG V++G + ++  FG  V   GG + L     +S  +I  P   +KVG ++  +V
Sbjct: 198 SKLQPGQVIEGTIKSIVDFGLFVDI-GGFEGLVHRSEISWKDIPVPPNTYKVGDKVTVKV 256

Query: 554 LGV-KSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           LGV +SK RI+++ K+      + +   Y   T    T G +  +   G FVR    V+G
Sbjct: 257 LGVDRSKERISLSIKQLRPDPWIGLKQRYPAGTK---TTGTVVSLTDFGAFVRIEEDVEG 313

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL-- 669
               SEL       P  +  VGQ V+  ++      RR++LS      RV  D   K+  
Sbjct: 314 LVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSM----KRVQPDPWEKIEE 369

Query: 670 ----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEF 724
               GS+V G V  +      V++       G     H+++   +       V+  G E 
Sbjct: 370 KYPEGSIVHGRVTKLADFGAFVHL-----EDGVEALLHISEMSWDKVNKPSDVVTEGQEI 424

Query: 725 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-----IHPNSVVHGYVCNIIETGCFV 779
              ++  +       ++K  +  S ++L  D  H         S+V G +  + + G F+
Sbjct: 425 TAKVIKSD-------ASKRKIRLSLKELQEDPWHKFLESYSVGSIVEGPITELKDFGAFM 477

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK-----QSC 834
           +    + G    S+  D + A  +    VGQ+V++ I+ +N E  ++ LS++     +  
Sbjct: 478 KITDDVEGLIHVSEITDERIATPADVLQVGQTVKARIIGINEEKRQVRLSMRNLHKQEHL 537

Query: 835 CSSTDASFMQEHFLLEEKIAMLQ 857
            +S+DA    E   + E+I  L+
Sbjct: 538 VTSSDAG--HEAITMGERIKGLK 558



 Score = 76.3 bits (186), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 178/431 (41%), Gaps = 45/431 (10%)

Query: 243 IEDHGYILHFGLPSFTGFLPRNNLAEN--SGIDVKPGLLLQGVVRSIDRTRKVVYLSSDP 300
           ++D GY ++        FLP ++L E+    I+   G  +  ++  +DR  + + +S   
Sbjct: 124 VKDAGYHVNLLKSGIRAFLPGSHLGEDLTPNIEELRGKEVPFIILELDRRERNLVVSHR- 182

Query: 301 DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPT 360
               K + +  K      L PG ++   ++SI++ G+ +  +  F G V    +      
Sbjct: 183 -EYLKELERQKKEELFSKLQPGQVIEGTIKSIVDFGLFVD-IGGFEGLVHRSEI------ 234

Query: 361 TNWK------NDYNQHKKVNARILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHVKVG 408
            +WK      N Y    KV  ++L VD +   + L++     +P++ L  R P      G
Sbjct: 235 -SWKDIPVPPNTYKVGDKVTVKVLGVDRSKERISLSIKQLRPDPWIGLKQRYPAGTKTTG 293

Query: 409 DIY---DQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRV 465
            +    D    VR++  +  L+ I       P +         EV K+      G  V V
Sbjct: 294 TVVSLTDFGAFVRIEEDVEGLVHISELSWGYPEH-------PREVVKV------GQQVEV 340

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            +L     E   +  +K    +           G +V G+V  +  FGA V    GV+AL
Sbjct: 341 VVLDVNEQERRVSLSMKRVQPDPWEKIEEKYPEGSIVHGRVTKLADFGAFVHLEDGVEAL 400

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVKSKLAILSSYAEA 583
             +  MS  ++ KP      G E+  +V+      ++I ++ K+         L SY+  
Sbjct: 401 LHISEMSWDKVNKPSDVVTEGQEITAKVIKSDASKRKIRLSLKELQEDPWHKFLESYSVG 460

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
           +   I  G IT+++  G F++  + V+G    SE+  +    P+ +  VGQ VK RI+  
Sbjct: 461 S---IVEGPITELKDFGAFMKITDDVEGLIHVSEITDERIATPADVLQVGQTVKARIIGI 517

Query: 644 IPASRRINLSF 654
               R++ LS 
Sbjct: 518 NEEKRQVRLSM 528



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 119/255 (46%), Gaps = 27/255 (10%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V+I   + G VH +EL       P      GQ V+  VL+++   R    V LS++ 
Sbjct: 302  GAFVRIEEDVEGLVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQER---RVSLSMKR 358

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
                        +  D        EKIE+  P   IV G V  +   G F+ L   ++A 
Sbjct: 359  ------------VQPD------PWEKIEEKYPEGSIVHGRVTKLADFGAFVHLEDGVEAL 400

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            + +S +S   V  P      G+ +  +V+  +   +++ ++LK        +     L +
Sbjct: 401  LHISEMSWDKVNKPSDVVTEGQEITAKVIKSDASKRKIRLSLKELQEDPWHKF----LES 456

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
              VG IV G I  ++ +G F+ I + ++ GL HVSE++++ +     + + G+ VK +I+
Sbjct: 457  YSVGSIVEGPITELKDFGAFMKITD-DVEGLIHVSEITDERIATPADVLQVGQTVKARII 515

Query: 1515 KVDKEKRRISLGMKS 1529
             +++EKR++ L M++
Sbjct: 516  GINEEKRQVRLSMRN 530



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            L P  +++G +K++   G F+ +    +  V  S +S   +  P   + +G  V  +VL 
Sbjct: 200  LQPGQVIEGTIKSIVDFGLFVDIG-GFEGLVHRSEISWKDIPVPPNTYKVGDKVTVKVLG 258

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1484
            V+   +R+ +++K    +      I        G    G +  +  +G F+ IE  ++ G
Sbjct: 259  VDRSKERISLSIK----QLRPDPWIGLKQRYPAGTKTTGTVVSLTDFGAFVRIEE-DVEG 313

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            L H+SELS  + ++   + + G++V+V +L V++++RR+SL MK
Sbjct: 314  LVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMK 357



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 100/443 (22%), Positives = 185/443 (41%), Gaps = 70/443 (15%)

Query: 521 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHK---KTLVKSKLA 575
           G++A  P  H+ E   + P  +   G E+ F +L +  + + + V+H+   K L + K  
Sbjct: 137 GIRAFLPGSHLGED--LTPNIEELRGKEVPFIILELDRRERNLVVSHREYLKELERQKKE 194

Query: 576 ILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
            L S  +     +  G I  I   G FV    G +G   RSE+       P + Y VG  
Sbjct: 195 ELFSKLQPGQ--VIEGTIKSIVDFGLFVDI-GGFEGLVHRSEISWKDIPVPPNTYKVGDK 251

Query: 636 VKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL------GSLVSGVVDVVTPNAVVVY 688
           V  +++    +  RI+LS   ++P     D  + L      G+  +G V  +T     V 
Sbjct: 252 VTVKVLGVDRSKERISLSIKQLRP-----DPWIGLKQRYPAGTKTTGTVVSLTDFGAFVR 306

Query: 689 VIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQLLVLD--NESSNLLLSAKYSL 745
           +  +   +G +    L+  + EH    + V+K G +  +++VLD   +   + LS K   
Sbjct: 307 I--EEDVEGLVHISELSWGYPEHP---REVVKVGQQV-EVVVLDVNEQERRVSLSMKRVQ 360

Query: 746 INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
            +  +++          S+VHG V  + + G FV     +      S+    +    S  
Sbjct: 361 PDPWEKIEEKYPE---GSIVHGRVTKLADFGAFVHLEDGVEALLHISEMSWDKVNKPSDV 417

Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
              GQ + + ++  ++   +I LSLK+                       LQ    +   
Sbjct: 418 VTEGQEITAKVIKSDASKRKIRLSLKE-----------------------LQEDPWH--- 451

Query: 866 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF-----ITHHQLA--GATVESGS 918
            K++E + +GS++EG + E  DFG  +   +  DV G      IT  ++A     ++ G 
Sbjct: 452 -KFLESYSVGSIVEGPITELKDFGAFMKITD--DVEGLIHVSEITDERIATPADVLQVGQ 508

Query: 919 VIQAAILDVAKAERLVDLSLKTV 941
            ++A I+ + + +R V LS++ +
Sbjct: 509 TVKARIIGINEEKRQVRLSMRNL 531



 Score = 44.7 bits (104), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 103/477 (21%), Positives = 193/477 (40%), Gaps = 72/477 (15%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE--IVKPGKKFKVGAELVFRVLGV 556
           G +++G+V+ V   G +V      +AL     ++ F    ++PG +     E++   +  
Sbjct: 30  GDILRGRVVQVSDQGVLVDIGYKSEALMKPTELAPFHKAPLQPGDEI----EVLITYIDE 85

Query: 557 KSKRITVTHKKTLVKSKLAILS-SYAEATDRLITHGWIT-KIEKHGCFVRFY-NGVQGFA 613
           +   I V+ K  L + +++ L  +Y     RL   G I  +++  G  V    +G++ F 
Sbjct: 86  EEGTIHVSEKAALYEKRISELERAYRH---RLPITGTIEDEVKDAGYHVNLLKSGIRAFL 142

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDL---V 667
           P S LG D    P+     G+ V   I+      R + +S   ++ +  R  +++L   +
Sbjct: 143 PGSHLGED--LTPNIEELRGKEVPFIILELDRRERNLVVSHREYLKELERQKKEELFSKL 200

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-Q 726
           + G ++ G +  +    + V +   G  +G +    ++   +   V  +  K G +   +
Sbjct: 201 QPGQVIEGTIKSIVDFGLFVDI---GGFEGLVHRSEIS--WKDIPVPPNTYKVGDKVTVK 255

Query: 727 LLVLDNESSNLLLSAKY----SLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
           +L +D     + LS K       I   Q+ P+        +   G V ++ + G FVR  
Sbjct: 256 VLGVDRSKERISLSIKQLRPDPWIGLKQRYPA-------GTKTTGTVVSLTDFGAFVRIE 308

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASF 842
             + G    S+   G      +   VGQ V   +LDVN +  R++LS+K+          
Sbjct: 309 EDVEGLVHISELSWGYPEHPREVVKVGQQVEVVVLDVNEQERRVSLSMKR---------- 358

Query: 843 MQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYG 902
                        +Q       E K+ E    GS++ G+V +  DFG  V  E+  +   
Sbjct: 359 -------------VQPDPWEKIEEKYPE----GSIVHGRVTKLADFGAFVHLEDGVEALL 401

Query: 903 FITHHQL-----AGATVESGSVIQAAILDVAKAERLVDLSLKTVFID---RFREANS 951
            I+             V  G  I A ++    ++R + LSLK +  D   +F E+ S
Sbjct: 402 HISEMSWDKVNKPSDVVTEGQEITAKVIKSDASKRKIRLSLKELQEDPWHKFLESYS 458



 Score = 40.8 bits (94), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 94/427 (22%), Positives = 177/427 (41%), Gaps = 57/427 (13%)

Query: 180 DNLLPTIFHV-GQLVSCIVLQLDDDKKEIGKRKIWLSLR-----LSLLYKGLSLETVQEG 233
           ++L P I  + G+ V  I+L+LD  ++E   R + +S R     L    K      +Q G
Sbjct: 149 EDLTPNIEELRGKEVPFIILELD--RRE---RNLVVSHREYLKELERQKKEELFSKLQPG 203

Query: 234 MVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-----VVRSID 288
            V+   +KSI D G  +  G   F G + R+ ++    I V P     G      V  +D
Sbjct: 204 QVIEGTIKSIVDFGLFVDIG--GFEGLVHRSEISWKD-IPVPPNTYKVGDKVTVKVLGVD 260

Query: 289 RTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENGVMLSFLTYFTG 347
           R+++ + LS       K +  D   I +    P G   +  V S+ + G  +       G
Sbjct: 261 RSKERISLS------IKQLRPD-PWIGLKQRYPAGTKTTGTVVSLTDFGAFVRIEEDVEG 313

Query: 348 TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAP 401
            V I  L   +P  + +      ++V   +L V+   R V L++     +P+  +  + P
Sbjct: 314 LVHISELSWGYP-EHPREVVKVGQQVEVVVLDVNEQERRVSLSMKRVQPDPWEKIEEKYP 372

Query: 402 PS---HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYK 458
                H +V  + D    V ++ G+  LL              IS+++ ++V K      
Sbjct: 373 EGSIVHGRVTKLADFGAFVHLEDGVEALLH-------------ISEMSWDKVNKPSDVVT 419

Query: 459 EGSCVRVRIL---GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
           EG  +  +++     +    L+   L+   +   + ++S    G +V+G +  +  FGA 
Sbjct: 420 EGQEITAKVIKSDASKRKIRLSLKELQEDPWHKFLESYS---VGSIVEGPITELKDFGAF 476

Query: 516 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKL 574
           ++    V+ L  +  +++  I  P    +VG  +  R++G+ + KR      + L K + 
Sbjct: 477 MKITDDVEGLIHVSEITDERIATPADVLQVGQTVKARIIGINEEKRQVRLSMRNLHKQEH 536

Query: 575 AILSSYA 581
            + SS A
Sbjct: 537 LVTSSDA 543


>gi|377809630|ref|YP_005004851.1| 30S ribosomal protein S1 [Pediococcus claussenii ATCC BAA-344]
 gi|361056371|gb|AEV95175.1| 30S ribosomal protein S1 [Pediococcus claussenii ATCC BAA-344]
          Length = 405

 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 146/294 (49%), Gaps = 29/294 (9%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGLVV  G  + G +  + ++N  V++ LS Y EG+ +K K++EI  T      + LS +
Sbjct: 130  GGLVVDAG--VRGFIPASMIENRFVNN-LSAY-EGKTLKVKIIEIDAT---KNRLILSHK 182

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
              L+              +   K  E +  +    IV+G V  +T+ G FI L   +D  
Sbjct: 183  DVLNE-------------ERAAKREEVLNSIHEGDIVEGKVARLTNFGAFIDLG-GMDGL 228

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S +S   V  PE    +G+ V  +VLSV+P   R+ +++K + +      E    + 
Sbjct: 229  VHISEISYERVNKPEDVLKVGEDVKVKVLSVDPERNRISLSIKQTLAGPWDDIE----TK 284

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
              VG ++ G++KR+  +G F+ +    + GL H+S++S  H+     + ++GE VKVK+L
Sbjct: 285  APVGAVLDGKVKRLTDFGAFVEV-FPGVEGLVHISQISHKHIATPGDVLKSGEDVKVKVL 343

Query: 1515 KVDKEKRRISLGMKSSYFKNDADNLQMSSEEE---SDEAIEEVGSYNRSSLLEN 1565
             V  E+ R++L +K+       DN   S+ E    +++A EE   +    L+ N
Sbjct: 344  DVRPEEHRLALSIKALEEAPKGDNTSSSNNESVNIANDAPEEESGFTLGDLIGN 397



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +  G +V+GKV  + +FGA +   GG+  L  +  +S   + KP    KVG ++  +VL 
Sbjct: 200 IHEGDIVEGKVARLTNFGAFIDL-GGMDGLVHISEISYERVNKPEDVLKVGEDVKVKVLS 258

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V  +  RI+++ K+TL      I     +A    +  G + ++   G FV  + GV+G  
Sbjct: 259 VDPERNRISLSIKQTLAGPWDDI---ETKAPVGAVLDGKVKRLTDFGAFVEVFPGVEGLV 315

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S++       P  +   G+ VK +++   P   R+ LS 
Sbjct: 316 HISQISHKHIATPGDVLKSGEDVKVKVLDVRPEEHRLALSI 356



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 31/205 (15%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            IHEGDIV G+++++ +   G  + +G  + G VH +E+    V+ P      G+ VK KV
Sbjct: 200  IHEGDIVEGKVARLTN--FGAFIDLG-GMDGLVHISEISYERVNKPEDVLKVGEDVKVKV 256

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYV 1375
            L +         + LS++ +L G                    + IE  +P   ++ G V
Sbjct: 257  LSVDPE---RNRISLSIKQTLAG------------------PWDDIETKAPVGAVLDGKV 295

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            K +T  G F+ +   ++  V +S +S  ++ +P      G+ V  +VL V P   R+ ++
Sbjct: 296  KRLTDFGAFVEVFPGVEGLVHISQISHKHIATPGDVLKSGEDVKVKVLDVRPEEHRLALS 355

Query: 1436 LKT------SDSRTASQSEINNLSN 1454
            +K        D+ ++S +E  N++N
Sbjct: 356  IKALEEAPKGDNTSSSNNESVNIAN 380



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 139/356 (39%), Gaps = 67/356 (18%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP----------ASRRINLSFMMK 657
           GV+G  P  EL      + + +  +G  ++  ++S I           + +R+    + K
Sbjct: 49  GVEGVVPLRELSNKHIDDINEVAKIGDELELVVISKIGNDKEGGSYLLSKKRLEAQAIWK 108

Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV 717
             +  ED+   L   V+ VV       +VV    +G+   ++      ++L         
Sbjct: 109 DIQAKEDNNETLEVPVTQVV----KGGLVVDAGVRGFIPASMIENRFVNNL--------- 155

Query: 718 IKPGYEFDQLLV----LDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNI 772
               YE   L V    +D   + L+LS K  L    A +     + IH   +V G V  +
Sbjct: 156 --SAYEGKTLKVKIIEIDATKNRLILSHKDVLNEERAAKREEVLNSIHEGDIVEGKVARL 213

Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
              G F+  LG + G    S+    +         VG+ V+  +L V+ E  RI+LS+KQ
Sbjct: 214 TNFGAFID-LGGMDGLVHISEISYERVNKPEDVLKVGEDVKVKVLSVDPERNRISLSIKQ 272

Query: 833 SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
           +     D         +E K                     +G+V++GKV    DFG  V
Sbjct: 273 TLAGPWDD--------IETKAP-------------------VGAVLDGKVKRLTDFGAFV 305

Query: 893 SFEEHSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
             E    V G      I+H  +A  G  ++SG  ++  +LDV   E  + LS+K +
Sbjct: 306 --EVFPGVEGLVHISQISHKHIATPGDVLKSGEDVKVKVLDVRPEEHRLALSIKAL 359



 Score = 47.0 bits (110), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 17/197 (8%)

Query: 369 QHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVRVDRGL 423
           + K +  +I+ +D T   + L+    L   RA       + +  GDI  + KV R+    
Sbjct: 159 EGKTLKVKIIEIDATKNRLILSHKDVLNEERAAKREEVLNSIHEGDIV-EGKVARL-TNF 216

Query: 424 GLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---RHLEGLATGI 480
           G  +D+          V IS+++ E V K E   K G  V+V++L     R+   L+   
Sbjct: 217 GAFIDLGGMD----GLVHISEISYERVNKPEDVLKVGEDVKVKVLSVDPERNRISLSIKQ 272

Query: 481 LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG 540
             A  ++ +    +    G V+ GKV  +  FGA V+   GV+ L  +  +S   I  PG
Sbjct: 273 TLAGPWDDI---ETKAPVGAVLDGKVKRLTDFGAFVEVFPGVEGLVHISQISHKHIATPG 329

Query: 541 KKFKVGAELVFRVLGVK 557
              K G ++  +VL V+
Sbjct: 330 DVLKSGEDVKVKVLDVR 346



 Score = 43.9 bits (102), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 147/350 (42%), Gaps = 24/350 (6%)

Query: 494 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAEL-- 549
            DV+ G VV G+V+ +D S   IV   G GV+ + PL  +S   I    +  K+G EL  
Sbjct: 20  GDVQIGDVVTGEVLDIDDSRQLIVGIQGAGVEGVVPLRELSNKHIDDINEVAKIGDELEL 79

Query: 550 -VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
            V   +G   +  +    K  ++++       A+  +       +T++ K G  V    G
Sbjct: 80  VVISKIGNDKEGGSYLLSKKRLEAQAIWKDIQAKEDNNETLEVPVTQVVKGGLVVDA--G 137

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL 666
           V+GF P S +  +      S Y  G+ +K +I+       R+ LS   ++   R ++ + 
Sbjct: 138 VRGFIPASMIE-NRFVNNLSAYE-GKTLKVKIIEIDATKNRLILSHKDVLNEERAAKREE 195

Query: 667 V----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
           V      G +V G V  +T     + +   G   G +    ++   E     + V+K G 
Sbjct: 196 VLNSIHEGDIVEGKVARLTNFGAFIDL---GGMDGLVHISEIS--YERVNKPEDVLKVGE 250

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           +   ++L +D E + + LS K +L      + + A      +V+ G V  + + G FV  
Sbjct: 251 DVKVKVLSVDPERNRISLSIKQTLAGPWDDIETKAP---VGAVLDGKVKRLTDFGAFVEV 307

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
              + G    S+      A        G+ V+  +LDV  E  R+ LS+K
Sbjct: 308 FPGVEGLVHISQISHKHIATPGDVLKSGEDVKVKVLDVRPEEHRLALSIK 357



 Score = 41.2 bits (95), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 1449 INNLSNLHVGDIVIGQIKRVE-SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
            IN++ ++ +GD+V G++  ++ S  L + I+   + G+  + ELS  H+D+I  + + G+
Sbjct: 16   INSVGDVQIGDVVTGEVLDIDDSRQLIVGIQGAGVEGVVPLRELSNKHIDDINEVAKIGD 75

Query: 1508 KVK-VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1552
            +++ V I K+  +K   S  +     +  A    + ++E+++E +E
Sbjct: 76   ELELVVISKIGNDKEGGSYLLSKKRLEAQAIWKDIQAKEDNNETLE 121


>gi|84496588|ref|ZP_00995442.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649]
 gi|84383356|gb|EAP99237.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649]
          Length = 502

 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 184/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS+  L    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 13   IAINDIGSEEDLLAAIDATIKHFNDGDIVEGIIVKVDRDEVLLDIGYKTEGVIPSRELSI 72

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 73   KHDIDPNEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 119

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 120  KVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----IEA 173

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   +               +++L    +  G 
Sbjct: 174  KIIELDKNRN---NVVLSRRAWLEQTQSEVRTTF-------------LKELQKGQVRSGV 217

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 218  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGDEVTVEVLDVDMDRERVSL 276

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +    + +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+E
Sbjct: 277  SLKAT-----QEDPWQHFARTHAIGQVVPGKVTKLVPFGSFVRVED-GIEGLVHISELAE 330

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +   G  + VK++ +D E+RRISL +K +
Sbjct: 331  RHVELPEQVVTVGADIFVKVIDIDLERRRISLSLKQA 367



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 166/392 (42%), Gaps = 36/392 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    + P +  KVG E+   VL  + 
Sbjct: 38  GDIVEGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDIDPNEVVKVGDEVEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGTIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELQ 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGDEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 264 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGSFVRVEDGI 319

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ-----SCCSSTDA 840
            G    S+  +       +   VG  +   ++D++ E  RI+LSLKQ     +  +  D 
Sbjct: 320 EGLVHISELAERHVELPEQVVTVGADIFVKVIDIDLERRRISLSLKQANEDGAGLTEFDP 379

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
           +        +E+ A       +    +W+EG+
Sbjct: 380 TLYGMAAEYDEQGAYKYPEGFDSETNEWLEGY 411



 Score = 48.5 bits (114), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 133/298 (44%), Gaps = 43/298 (14%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 112  ERAWGTIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 170

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1272
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G +S I++
Sbjct: 171  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLKELQKGQVRSGVVSSIVN 223

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
               G  V +G  + G VH +EL    +  P    + G  V  +VL++         V LS
Sbjct: 224  F--GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGDEVTVEVLDVDMDRE---RVSLS 277

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
            L+++ +                P +H  +   +    +V G V  +   G F+ +   ++
Sbjct: 278  LKATQE---------------DPWQHFARTHAI--GQVVPGKVTKLVPFGSFVRVEDGIE 320

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
              V +S L++ +VE PE+   +G  +  +V+ ++   +R+ ++LK ++   A  +E +
Sbjct: 321  GLVHISELAERHVELPEQVVTVGADIFVKVIDIDLERRRISLSLKQANEDGAGLTEFD 378


>gi|453075291|ref|ZP_21978079.1| 30S ribosomal protein S1 [Rhodococcus triatomae BKS 15-14]
 gi|452763581|gb|EME21862.1| 30S ribosomal protein S1 [Rhodococcus triatomae BKS 15-14]
          Length = 490

 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 184/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 922
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 923 AILDVAKAERLVDLSLK 939
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 48.1 bits (113), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 375

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 376 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|15827720|ref|NP_301983.1| 30S ribosomal protein S1 [Mycobacterium leprae TN]
 gi|221230197|ref|YP_002503613.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
 gi|13432211|sp|P46836.2|RS1_MYCLE RecName: Full=30S ribosomal protein S1
 gi|13093271|emb|CAC31763.1| 30S ribosomal protein S1 [Mycobacterium leprae]
 gi|219933304|emb|CAR71477.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
          Length = 481

 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V+++GS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    AVPSPQIAVNDVGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            A+   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEALKEKDEAVKGIVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 149/379 (39%), Gaps = 49/379 (12%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93

Query: 644 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                R+ LS      +    + + L +    V G+V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGLILDIGLRGFLPASL- 152

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLD 264

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 933
            GKV +   FG  V  EE  +    I+     H ++    V  G      ++D+    R 
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRR 357

Query: 934 VDLSLKTV---FIDRFREA 949
           + LSLK     +I+ F  A
Sbjct: 358 ISLSLKQANEDYIEEFDPA 376



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 166/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGIVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGNEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+     +  +++E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA-----NEDYIEE 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDPDSNEWLEGF 407



 Score = 43.9 bits (102), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 111/256 (43%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----Q 193

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 194  TQSEVRSEFLNQLQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGNEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLERRRISLSLKQAN 366


>gi|256825135|ref|YP_003149095.1| 30S ribosomal protein S1 [Kytococcus sedentarius DSM 20547]
 gi|256688528|gb|ACV06330.1| SSU ribosomal protein S1P [Kytococcus sedentarius DSM 20547]
          Length = 492

 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 176/373 (47%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P E+        +G  V   
Sbjct: 33   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDIDPDEV------VVVGDTVEAL 86

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    +  +V G + +++ G  GL+V
Sbjct: 87   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEQIKEDDGVVTGSVIEVVKG--GLIV 137

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 138  DIGLRGFLPASLVEMRRVRDLQPYVG----QEIEAKIIELDKNRN---NVVLSRRAWLEQ 190

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   +               +++L    +  G V ++ + G F+ L   +D  V +S 
Sbjct: 191  TQSEVRTSF-------------LKELQRGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSE 236

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-V 1457
            LS  +++ P +   +G+ V   VL V+   +RV ++LK      A+Q +   L +  H +
Sbjct: 237  LSWKHIDHPGEVVEVGQEVTVEVLDVDMDRERVSLSLK------ATQEDPWQLFARTHAI 290

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G IV G++ ++  +G F+ +E+  + GL H+SEL+E HV+  E   + G++V V+++ +D
Sbjct: 291  GQIVPGKVTKLVPFGAFVRVED-GIEGLVHISELAERHVELPEQAVQVGQEVFVRVIDID 349

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 350  LERRRISLSLKQA 362



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 151/361 (41%), Gaps = 31/361 (8%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T  +   G +V+G ++ VD    ++      + + P   +S    + P +   VG  +  
Sbjct: 26  TMKNFDDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDIDPDEVVVVGDTVEA 85

Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            VL  + K  R+ ++ K+   +     +    E  D  +  G + ++ K G  V    G+
Sbjct: 86  LVLQKEDKEGRLILSKKRAQYERAWGTIEQIKE--DDGVVTGSVIEVVKGGLIVDI--GL 141

Query: 610 QGFAPRS--ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRV 661
           +GF P S  E+      +P    +VGQ ++ +I+      +++  SRR  L       R 
Sbjct: 142 RGFLPASLVEMRRVRDLQP----YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 197

Query: 662 SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 720
           S    ++ G +  GVV  +      V +   G   G +    L+  H++H      V++ 
Sbjct: 198 SFLKELQRGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVEV 251

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCF 778
           G E   ++L +D +   + LS K +  +  Q      +  H    +V G V  ++  G F
Sbjct: 252 GQEVTVEVLDVDMDRERVSLSLKATQEDPWQLF----ARTHAIGQIVPGKVTKLVPFGAF 307

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           VR    + G    S+  +       +   VGQ V   ++D++ E  RI+LSLKQ+    T
Sbjct: 308 VRVEDGIEGLVHISELAERHVELPEQAVQVGQEVFVRVIDIDLERRRISLSLKQANQVGT 367

Query: 839 D 839
           D
Sbjct: 368 D 368



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 113/251 (45%), Gaps = 37/251 (14%)

Query: 1197 AYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             + P+ L E +R    + ++G+ +   ++ ++K +  + L  R + +          ++ 
Sbjct: 143  GFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLE-------QTQSEV 195

Query: 1253 MQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEG 1309
              +F+ E   G +  G +S I++   G  V +G  + G VH +EL    +  P    + G
Sbjct: 196  RTSFLKELQRGQVRPGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPGEVVEVG 252

Query: 1310 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNM 1369
            Q V  +VL++         V LSL+++ +                P +   +   +    
Sbjct: 253  QEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWQLFARTHAI--GQ 292

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +G+ V  RV+ ++   
Sbjct: 293  IVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVELPEQAVQVGQEVFVRVIDIDLER 352

Query: 1430 KRVEVTLKTSD 1440
            +R+ ++LK ++
Sbjct: 353  RRISLSLKQAN 363



 Score = 41.2 bits (95), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 123/287 (42%), Gaps = 46/287 (16%)

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
           G +V G +  V  + V++ +   GY ++G IP+  L+  ++H      V+  G   + L+
Sbjct: 33  GDIVEGTIVKVDRDEVLLDI---GYKTEGVIPSRELS--IKHDIDPDEVVVVGDTVEALV 87

Query: 729 VL-DNESSNLLLSAKYSLINSA----QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           +  +++   L+LS K +    A    +Q+  D      + VV G V  +++ G  V    
Sbjct: 88  LQKEDKEGRLILSKKRAQYERAWGTIEQIKED------DGVVTGSVIEVVKGGLIVDI-- 139

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDA 840
            L GF P S     +  DL    YVGQ + + I++++     + LS +   +   S    
Sbjct: 140 GLRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRT 197

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
           SF++E    + +  ++ S  + G+       F+    ++G VH S      +S++     
Sbjct: 198 SFLKELQRGQVRPGVVSSIVNFGA-------FVDLGGVDGLVHVSE-----LSWK----- 240

Query: 901 YGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
                H    G  VE G  +   +LDV      V LSLK    D ++
Sbjct: 241 -----HIDHPGEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 282


>gi|423555636|ref|ZP_17531939.1| ribosomal protein S1 [Bacillus cereus MC67]
 gi|401197040|gb|EJR03978.1| ribosomal protein S1 [Bacillus cereus MC67]
          Length = 382

 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +N+  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELNQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFADY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    IV+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365


>gi|354582632|ref|ZP_09001533.1| RNA binding S1 domain protein [Paenibacillus lactis 154]
 gi|353198924|gb|EHB64390.1| RNA binding S1 domain protein [Paenibacillus lactis 154]
          Length = 407

 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 169/377 (44%), Gaps = 57/377 (15%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G + K+++  A ++I       + + +      +L        +G+ V   V+SI
Sbjct: 28   GDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRE--LSSVQLDNASDAVQVGQEVECKVVSI 85

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
            N +K+ L L         S + +D  N  D ++      D+    ++ ++ G  GLV  +
Sbjct: 86   NDDKESLVL---------SKRAIDAENAWDELEKHFEAQDVFEVTVADVVKG--GLVADV 134

Query: 1282 G-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            G     P      HF E          S Y +G+ ++ KV E+ R       V LS +  
Sbjct: 135  GARGFIPASMVERHFVE--------DFSDY-KGRTLRVKVKELDRE---NNKVILSQKDV 182

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
            L+     N   +             + +L    +++G V+ +T  G F+ +   +D  V 
Sbjct: 183  LEEEFEANKQKV-------------MAELKEGQVLEGTVQRLTQFGAFVDVG-GVDGLVH 228

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS---RTASQSEINNLS 1453
            +S ++  +V+ P      G  V  +VL V+P   ++ +++K +      TA +       
Sbjct: 229  VSEIAWNHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAAGPGPWETAGE------- 281

Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
              H GDIV G +KR+ S+G F+ +    + GL H+S++S  H+   + + + G++V+VK+
Sbjct: 282  QFHTGDIVTGVVKRLVSFGAFVEL-APGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKV 340

Query: 1514 LKVDKEKRRISLGMKSS 1530
            L ++  ++R+SL +K +
Sbjct: 341  LDINPSEQRVSLSIKET 357



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 128/277 (46%), Gaps = 33/277 (11%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            + +GD V G I K+        V IG    G +   EL ++ + +       GQ V+CKV
Sbjct: 25   LKKGDTVKGTIVKLEDNQA--YVSIGYKYDGVIPVRELSSVQLDNASDAVQVGQEVECKV 82

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK---IEDLSPNMIVQG 1373
            + I+             + SL  + S  + D     D   KH E     E    +++  G
Sbjct: 83   VSINDD-----------KESL--VLSKRAIDAENAWDELEKHFEAQDVFEVTVADVVKGG 129

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V +V ++G FI  S  +  +  + + SD            G+ +  +V  ++  + +V 
Sbjct: 130  LVADVGARG-FIPAS--MVERHFVEDFSDYK----------GRTLRVKVKELDRENNKVI 176

Query: 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            ++ K         ++   ++ L  G ++ G ++R+  +G F+ +   +  GL HVSE++ 
Sbjct: 177  LSQKDVLEEEFEANKQKVMAELKEGQVLEGTVQRLTQFGAFVDVGGVD--GLVHVSEIAW 234

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +HVD    +   G++V+VK+LKVD EK +ISL +K++
Sbjct: 235  NHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAA 271



 Score = 48.9 bits (115), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 23/188 (12%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            + EG ++ G + ++     G  V +G  + G VH +E+    V  P     EG  V+ KV
Sbjct: 198  LKEGQVLEGTVQRLTQF--GAFVDVG-GVDGLVHVSEIAWNHVDKPSDVLSEGDQVRVKV 254

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L++    +G   + LS++++                  PG      E      IV G VK
Sbjct: 255  LKVDPE-KG--KISLSIKAA-----------------GPGPWETAGEQFHTGDIVTGVVK 294

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             + S G F+ L+  ++  V +S +S  ++ +P++    G+ V  +VL + P  +RV +++
Sbjct: 295  RLVSFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINPSEQRVSLSI 354

Query: 1437 KTSDSRTA 1444
            K ++   A
Sbjct: 355  KETEEAPA 362



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           +++K G V++G V  +  FGA V   GGV  L  +  ++   + KP      G ++  +V
Sbjct: 196 AELKEGQVLEGTVQRLTQFGAFVDV-GGVDGLVHVSEIAWNHVDKPSDVLSEGDQVRVKV 254

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGV 609
           L V  ++  ++     +  K A    +  A ++     I  G + ++   G FV    GV
Sbjct: 255 LKVDPEKGKIS-----LSIKAAGPGPWETAGEQFHTGDIVTGVVKRLVSFGAFVELAPGV 309

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           +G    S++       P  +   GQ V+ +++   P+ +R++LS 
Sbjct: 310 EGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINPSEQRVSLSI 354



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
             V +S++A   V K      EG  VRV++L     +G  +  +KA+             
Sbjct: 225 GLVHVSEIAWNHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAAGPGPWETAGEQFH 284

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
            G +V G V  + SFGA V+   GV+ L  +  +S   I  P +  K G E+  +VL + 
Sbjct: 285 TGDIVTGVVKRLVSFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDIN 344

Query: 558 --SKRITVTHKKT 568
              +R++++ K+T
Sbjct: 345 PSEQRVSLSIKET 357



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 141/357 (39%), Gaps = 43/357 (12%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G  VKG ++ ++   A V        + P+  +S  ++       +VG E+  +V+ 
Sbjct: 25  LKKGDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRELSSVQLDNASDAVQVGQEVECKVVS 84

Query: 556 VKSKRITVTHKKTLVKSKLAI--------LSSYAEATDRLITHGWITKIEKHGCFVRFYN 607
           +         K++LV SK AI        L  + EA D  +    +  + K G       
Sbjct: 85  IND------DKESLVLSKRAIDAENAWDELEKHFEAQD--VFEVTVADVVKGGLVADV-- 134

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPT 659
           G +GF P S +      E  S Y  G+ ++ ++      + ++ LS        F     
Sbjct: 135 GARGFIPASMVERH-FVEDFSDYK-GRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQ 192

Query: 660 RVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
           +V  +  +K G ++ G V  +T     V V   G   G +    +A    H      V+ 
Sbjct: 193 KVMAE--LKEGQVLEGTVQRLTQFGAFVDV---GGVDGLVHVSEIA--WNHVDKPSDVLS 245

Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETG 776
            G +   ++L +D E   + LS     I +A   P + +    H   +V G V  ++  G
Sbjct: 246 EGDQVRVKVLKVDPEKGKISLS-----IKAAGPGPWETAGEQFHTGDIVTGVVKRLVSFG 300

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            FV     + G    S+          +    GQ V+  +LD+N    R++LS+K++
Sbjct: 301 AFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINPSEQRVSLSIKET 357



 Score = 41.2 bits (95), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 1/108 (0%)

Query: 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            E T     +   SQ +++ + +L  GD V G I ++E    +++I      G+  V ELS
Sbjct: 3    EETRNQESAEMQSQEQLDQIVSLKKGDTVKGTIVKLEDNQAYVSI-GYKYDGVIPVRELS 61

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
               +DN     + G++V+ K++ ++ +K  + L  ++   +N  D L+
Sbjct: 62   SVQLDNASDAVQVGQEVECKVVSINDDKESLVLSKRAIDAENAWDELE 109


>gi|396584066|ref|ZP_10484565.1| 30S ribosomal protein S1 [Actinomyces sp. ICM47]
 gi|395548355|gb|EJG15630.1| 30S ribosomal protein S1 [Actinomyces sp. ICM47]
          Length = 478

 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 184/400 (46%), Gaps = 45/400 (11%)

Query: 1138 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1191
            ++     + +++IGS+  L    D +I     G  V G V KVD++  LL I    K + 
Sbjct: 1    MTTNTPQVAINDIGSEADLIAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEG 58

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
             IL                 +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 59   VILSRELSIKHDVNPDDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 111

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 112  KIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 165

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   ++              +  L    + 
Sbjct: 166  IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LHTLQKGQVR 209

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +R
Sbjct: 210  SGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRER 268

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SE
Sbjct: 269  VSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISE 322

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L++ HV+  + + + GE+V VK++ +D E+RRISL +K +
Sbjct: 323  LAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 143/367 (38%), Gaps = 56/367 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G + K++     +      +G     EL +     P  +  VG  ++  ++      
Sbjct: 35  IVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKEDKE 94

Query: 648 RRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 699
            R+ LS           K  ++ E+D      +V+G V  V    +++ +  +G+   ++
Sbjct: 95  GRLLLSKKRAQYERAWGKIEKIKEED-----GVVTGTVIEVVKGGLILDIGLRGFLPASL 149

Query: 700 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
                   +E   V       G E + +++ LD   +N++LS +  L  +  ++ ++  H
Sbjct: 150 --------VEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLH 201

Query: 759 -IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
            +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L
Sbjct: 202 TLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 260

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
           DV+ +  R++LSLK +      A F + H                           IG V
Sbjct: 261 DVDMDRERVSLSLKATQEDPWQA-FARTH--------------------------AIGQV 293

Query: 878 IEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAER 932
           + GKV +   FG  V  E+  +    I+     H +L    V+ G  +   ++D+    R
Sbjct: 294 VPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERR 353

Query: 933 LVDLSLK 939
            + LSLK
Sbjct: 354 RISLSLK 360



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 33  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKED 92

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLLLSKKRAQYERAWGKIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 204

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 259 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 313

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 131/293 (44%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R      +IG+ 
Sbjct: 107  ERAWGKIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLAPYIGRE 165

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++  + + T + +G +  G +S I++   
Sbjct: 166  IEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLHT-LQKGQVRSGVVSSIVNF-- 219

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 220  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 275

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 276  TQE---------------DPWQAFARTHAIG--QVVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE P++   +G+ V  +V+ ++   +R+ ++LK ++      SE
Sbjct: 319  HISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQANEGVDPNSE 371


>gi|269795322|ref|YP_003314777.1| 30S ribosomal protein S1P [Sanguibacter keddieii DSM 10542]
 gi|269097507|gb|ACZ21943.1| SSU ribosomal protein S1P [Sanguibacter keddieii DSM 10542]
          Length = 496

 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 173/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P E+        +G AV   
Sbjct: 38   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEV------VKVGDAVEAL 91

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 92   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGVVTGTVIEVVKG--GLIL 142

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 143  DIGLRGFLPASLVEMRRVRDLQPYVGKE----IEAKIIELDKNRN---NVVLSRRAWLE- 194

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
               T S   ST + T          L    +  G V ++ + G F+ L   +D  V +S 
Sbjct: 195  --QTQSEVRSTFLQT----------LQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSE 241

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G+ V   VL V+   +RV ++LK +      +      +  H +G
Sbjct: 242  LSWKHIDHPGEVVEVGQEVTVEVLDVDFDRERVSLSLKAT-----QEDPWQTFARTHAIG 296

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             +V G++ ++  +G F+ +E+  + GL H+SEL+  HV+  E +   G+ V VK++ +D 
Sbjct: 297  QVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAVRHVELPEQVVNVGDDVFVKVIDIDL 355

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 356  ERRRISLSLKQA 367



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  PG+  +VG E+   VL 
Sbjct: 208 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPGEVVEVGQEVTVEVLD 266

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 267 VDFDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 323

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +     P  + +VG  V  +++      RRI+LS 
Sbjct: 324 HISELAVRHVELPEQVVNVGDDVFVKVIDIDLERRRISLSL 364



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 145/375 (38%), Gaps = 46/375 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P  +  VG 
Sbjct: 27  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGD 86

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            V+  ++       R+ LS        +   + K+     +V+G V  V    +++ +  
Sbjct: 87  AVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDIGL 146

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 147 RGFLPASL--------VEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 198

Query: 751 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S     +    V  G V +I+  G FV  LG + G    S+          +   VG
Sbjct: 199 EVRSTFLQTLQKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPGEVVEVG 257

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
           Q V   +LDV+ +  R++LSLK +       +F + H                       
Sbjct: 258 QEVTVEVLDVDFDRERVSLSLK-ATQEDPWQTFARTH----------------------- 293

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 924
               IG V+ GKV +   FG  V  E+  +    I+     H +L    V  G  +   +
Sbjct: 294 ---AIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELPEQVVNVGDDVFVKV 350

Query: 925 LDVAKAERLVDLSLK 939
           +D+    R + LSLK
Sbjct: 351 IDIDLERRRISLSLK 365



 Score = 48.9 bits (115), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V PG+  KVG  +   VL  + 
Sbjct: 38  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDAVEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H      V++ G E   +
Sbjct: 210 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPG---EVVEVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 264 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 319

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISELAVRHVELPEQVVNVGDDVFVKVIDIDLERRRISLSLKQA 367



 Score = 44.7 bits (104), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 132/293 (45%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 112  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 170

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++ +  +QT + +G +  G +S I++   
Sbjct: 171  IEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRSTFLQT-LQKGQVRPGVVSSIVNF-- 224

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 225  GAFVDLG-GVDGLVHVSELSWKHIDHPGEVVEVGQEVTVEVLDVDFDRE---RVSLSLKA 280

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +    T +   +     PGK                 V  +   G F+ +   ++  V
Sbjct: 281  TQEDPWQTFARTHAIGQVVPGK-----------------VTKLVPFGAFVRVEDGIEGLV 323

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G  V  +V+ ++   +R+ ++LK ++     +S+
Sbjct: 324  HISELAVRHVELPEQVVNVGDDVFVKVIDIDLERRRISLSLKQANEGVDPESD 376


>gi|410667902|ref|YP_006920273.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Thermacetogenium
            phaeum DSM 12270]
 gi|409105649|gb|AFV11774.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH
            [Thermacetogenium phaeum DSM 12270]
          Length = 708

 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 10/203 (4%)

Query: 1357 KHLEK----IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF 1412
            +HLE      E + P+ I +G V+++T+ G F+ L   +D  + +S LS G V+ P    
Sbjct: 497  EHLEAQRRLWETIEPDQIRKGTVRHLTNFGAFVDLG-GVDGLLHISELSWGRVKHPSDVV 555

Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1472
              G  +   VLSV+   KR+ ++LK          +        VG+IV G + R+ S+G
Sbjct: 556  QEGDEIEVYVLSVDKERKRISLSLKQVQGNPWDTVD----ERYQVGEIVTGTVVRLVSFG 611

Query: 1473 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532
             F+ +E   + GL H+S +++ HV+  E I   GE+++VKIL ++K+ +RISL +K +  
Sbjct: 612  AFVELE-PGVEGLVHISRMADYHVEKPEDIVAVGEQIQVKILDINKQDQRISLSIKDARS 670

Query: 1533 KNDADNLQMSSEEESDEAIEEVG 1555
              +        EE+S  A   VG
Sbjct: 671  DKNEPRGNTQEEEKSQPASAGVG 693



 Score = 40.8 bits (94), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G +V G V+ + SFGA V+   GV+ L  +  M+++ + KP     VG ++  ++L +  
Sbjct: 597 GEIVTGTVVRLVSFGAFVELEPGVEGLVHISRMADYHVEKPEDIVAVGEQIQVKILDINK 656

Query: 557 KSKRITVTHK 566
           + +RI+++ K
Sbjct: 657 QDQRISLSIK 666


>gi|315604243|ref|ZP_07879309.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313949|gb|EFU62000.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 478

 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 184/400 (46%), Gaps = 45/400 (11%)

Query: 1138 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1191
            ++     + +++IGS+  L    D +I     G  V G V KVD++  LL I    K + 
Sbjct: 1    MTTNTPQVAINDIGSEADLIAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEG 58

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
             IL            +    +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 59   VILSRELSIKHDVNPEDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 111

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 112  KIEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 165

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   ++              +  L    + 
Sbjct: 166  IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LHTLQKGQVR 209

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 210  SGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDMDRER 268

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SE
Sbjct: 269  VSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISE 322

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L++ HV+  + + + GE+V VK++ +D E+RRISL +K +
Sbjct: 323  LAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H+ ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+ 
Sbjct: 199 FLHT-LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGNEVT 256

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G
Sbjct: 257 VEVLDVDMDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDG 313

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSL 359



 Score = 46.2 bits (108), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 33  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPEDVVAVGDQIEALVLQKED 92

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLLLSKKRAQYERAWGKIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 204

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 258

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 259 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 313

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 128/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R      +IG+ 
Sbjct: 107  ERAWGKIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLAPYIGRE 165

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++  + + T + +G +  G +S I++   
Sbjct: 166  IEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLHT-LQKGQVRSGVVSSIVNF-- 219

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + G  V  +VL++         V LSL++
Sbjct: 220  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDMDRE---RVSLSLKA 275

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 276  TQE---------------DPWQAFARTHAIG--QVVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L+  +VE P++   +G+ V  +V+ ++   +R+ ++LK ++
Sbjct: 319  HISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQAN 363


>gi|359772824|ref|ZP_09276239.1| 30S ribosomal protein S1 [Gordonia effusa NBRC 100432]
 gi|359310011|dbj|GAB19017.1| 30S ribosomal protein S1 [Gordonia effusa NBRC 100432]
          Length = 491

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPNEVVQVGDEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 155/391 (39%), Gaps = 50/391 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         ++   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPNEVVQVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 922
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 923 AILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.8 bits (112), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H      V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPN---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPSKYGMADSYDDQGNYIFPEGFDAETNEWLEGF 407



 Score = 40.8 bits (94), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 111/259 (42%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 197

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                       F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 198  V-------RSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 247

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 248  PNEVVQVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRQFAR 289

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +
Sbjct: 290  THAI--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVK 347

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK ++
Sbjct: 348  VIDIDLERRRISLSLKQAN 366


>gi|251796396|ref|YP_003011127.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JDR-2]
 gi|247544022|gb|ACT01041.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
          Length = 411

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 173/367 (47%), Gaps = 37/367 (10%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G + K+D+  A +++       + + +      +L        +G+ V   V+SI
Sbjct: 22   GDTVKGTIIKIDDNQAYVSLGYKYDGVIPVRE--LSAVQLDNANDAVQVGQEVELKVVSI 79

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            + EK+ L L  R   DG      + + D +Q+    G++    ++ ++ G  GLV  +G 
Sbjct: 80   DDEKEKLVLSKR-LIDG------ERAWDGLQSRFESGEVFEVAVADVVKG--GLVADVG- 129

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
             + G +  + ++   V D  S Y +G+ ++ KV EI R       V LS +  LD     
Sbjct: 130  -VRGFIPASMVERHFVED-FSDY-KGRTLRVKVKEIDRE---NNKVILSAKDVLDAEFEQ 183

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
            N            +H+  I  L     ++G V+ +T  G F+ +   +D  V +S LS  
Sbjct: 184  NK-----------QHV--IAGLQVGAQLEGTVQRLTPFGAFVDIG-GIDGLVHVSELSWQ 229

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
            +V  P+     G+ V  +VL V+P + ++ +++K +       +        +VGDIV G
Sbjct: 230  HVAHPKDVVSEGQQVTVKVLKVDPAAGKISLSIKAAQPGPWESA----AGQFNVGDIVTG 285

Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
             ++R+ ++G F+ I    + GL H+S+++  H+     + + G++V+ K+L  +  ++R+
Sbjct: 286  TVRRLVTFGAFVEIA-PGVEGLVHISQIAHRHIATPFEVLKEGQEVQAKVLDFNPAEKRV 344

Query: 1524 SLGMKSS 1530
            SL +K +
Sbjct: 345  SLSIKET 351



 Score = 49.3 bits (116), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 145/351 (41%), Gaps = 31/351 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G  VKG +I +D   A V        + P+  +S  ++       +VG E+  +V+ 
Sbjct: 19  LKKGDTVKGTIIKIDDNQAYVSLGYKYDGVIPVRELSAVQLDNANDAVQVGQEVELKVVS 78

Query: 556 VKSKRITVTHKKTLVKSKLAI--LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           +  ++  +   K L+  + A   L S  E+ +  +    +  + K G       GV+GF 
Sbjct: 79  IDDEKEKLVLSKRLIDGERAWDGLQSRFESGE--VFEVAVADVVKGGLVADV--GVRGFI 134

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPTRVSEDD 665
           P S +      E  S Y  G+ ++ ++      + ++ LS        F      V    
Sbjct: 135 PASMVERH-FVEDFSDYK-GRTLRVKVKEIDRENNKVILSAKDVLDAEFEQNKQHVIAG- 191

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
            +++G+ + G V  +TP    V +   G   G +    L+   +H    K V+  G +  
Sbjct: 192 -LQVGAQLEGTVQRLTPFGAFVDI---GGIDGLVHVSELS--WQHVAHPKDVVSEGQQVT 245

Query: 726 -QLLVLDNESSNLLLSAKYSLINSAQQLP--SDASHIHPNSVVHGYVCNIIETGCFVRFL 782
            ++L +D  +  + LS     I +AQ  P  S A   +   +V G V  ++  G FV   
Sbjct: 246 VKVLKVDPAAGKISLS-----IKAAQPGPWESAAGQFNVGDIVTGTVRRLVTFGAFVEIA 300

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             + G    S+      A   +    GQ V++ +LD N    R++LS+K++
Sbjct: 301 PGVEGLVHISQIAHRHIATPFEVLKEGQEVQAKVLDFNPAEKRVSLSIKET 351



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 156/379 (41%), Gaps = 63/379 (16%)

Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKL 1154
            E+N      ++N F + K G TV   II    K D  ++++        ++ V E+ +  
Sbjct: 4    EINVQDQAAMDN-FVSLKKGDTVKGTII----KIDDNQAYVSLGYKYDGVIPVRELSAVQ 58

Query: 1155 LFEECD-VSIGQRVTGYVYKVDNEWALLTISRHL---KAQLFILDSAYEPSELQEFQRRF 1210
            L    D V +GQ V   V  +D+E   L +S+ L   +     L S +E  E+ E     
Sbjct: 59   LDNANDAVQVGQEVELKVVSIDDEKEKLVLSKRLIDGERAWDGLQSRFESGEVFEVA--- 115

Query: 1211 HIGKAVTGHVLSINKEKKLL--RLVLRPFQDGISD--------KTVDISNDNMQTFIHEG 1260
             +   V G +++    +  +   +V R F +  SD        K  +I  +N +  +   
Sbjct: 116  -VADVVKGGLVADVGVRGFIPASMVERHFVEDFSDYKGRTLRVKVKEIDRENNKVILSAK 174

Query: 1261 DIVGGRISK----ILSG--VG-------------GLVVQIGPHLYGRVHFTELKNICVSD 1301
            D++     +    +++G  VG             G  V IG  + G VH +EL    V+ 
Sbjct: 175  DVLDAEFEQNKQHVIAGLQVGAQLEGTVQRLTPFGAFVDIG-GIDGLVHVSELSWQHVAH 233

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P     EGQ V  KVL++         + LS++++                  PG     
Sbjct: 234  PKDVVSEGQQVTVKVLKVDPA---AGKISLSIKAA-----------------QPGPWESA 273

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
                +   IV G V+ + + G F+ ++  ++  V +S ++  ++ +P +    G+ V  +
Sbjct: 274  AGQFNVGDIVTGTVRRLVTFGAFVEIAPGVEGLVHISQIAHRHIATPFEVLKEGQEVQAK 333

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            VL   P  KRV +++K ++
Sbjct: 334  VLDFNPAEKRVSLSIKETE 352



 Score = 42.0 bits (97), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 1446 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1505
            Q+ ++N  +L  GD V G I +++    ++++      G+  V ELS   +DN     + 
Sbjct: 10   QAAMDNFVSLKKGDTVKGTIIKIDDNQAYVSL-GYKYDGVIPVRELSAVQLDNANDAVQV 68

Query: 1506 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1552
            G++V++K++ +D EK ++ L  +    +   D LQ  S  ES E  E
Sbjct: 69   GQEVELKVVSIDDEKEKLVLSKRLIDGERAWDGLQ--SRFESGEVFE 113


>gi|332670357|ref|YP_004453365.1| RNA binding S1 domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332339395|gb|AEE45978.1| RNA binding S1 domain protein [Cellulomonas fimi ATCC 484]
          Length = 510

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 187/403 (46%), Gaps = 55/403 (13%)

Query: 1141 KPS--MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            KP+   + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 28   KPATPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 87

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P E+        +G  V   VL   KE K  RL+L   +        + 
Sbjct: 88   SRELSIKHDVDPGEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQYER 134

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 135  AWGTIEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 191

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+    T S   ST + T          L   
Sbjct: 192  ---IEAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT----------LQKG 232

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+  
Sbjct: 233  QVRPGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFD 291

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H
Sbjct: 292  RERVSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVH 345

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+  HV+  E + + G+ V VK++ +D E+RRISL +K +
Sbjct: 346  ISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQA 388



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 229 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 287

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 288 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 344

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +     P  +  VG  V  +++      RRI+LS 
Sbjct: 345 HISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSL 385



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 166/394 (42%), Gaps = 39/394 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V PG+  KVG E+   VL  + 
Sbjct: 59  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDEVEALVLQKED 118

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 119 KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 174

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 175 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 230

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 231 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 284

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 285 VLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 339

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS------CCSST 838
           + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+           
Sbjct: 340 IEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQANEGFDPASEDF 399

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGF 872
           D +        +E+         + S  +W+EGF
Sbjct: 400 DPALYGMAAEYDEQGNYKYPEGFDPSTNEWLEGF 433



 Score = 44.7 bits (104), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 132/293 (45%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 133  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 191

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++ +  +QT + +G +  G +S I++   
Sbjct: 192  IEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRSTFLQT-LQKGQVRPGVVSSIVNF-- 245

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 246  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRE---RVSLSLKA 301

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 302  TQE---------------DPWQAFARTHAI--GQVVPGKVTKLVPFGAFVRVEDGIEGLV 344

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G  V  +V+ ++   +R+ ++LK ++      SE
Sbjct: 345  HISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQANEGFDPASE 397


>gi|325674222|ref|ZP_08153911.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707]
 gi|325554902|gb|EGD24575.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707]
          Length = 528

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 188/417 (45%), Gaps = 53/417 (12%)

Query: 1125 SNKPDMKKSFLWELSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEW 1178
            +N P      +   ++    + V++IGS   F    D +I     G  V G + KVD + 
Sbjct: 29   TNNPSGATQHMPSNTVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDE 88

Query: 1179 ALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
             LL I       + ++   +    +P+E+        +G  V   VL+  KE K  RL+L
Sbjct: 89   VLLDIGYKTEGVIPSRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLIL 140

Query: 1235 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
               +        + +   ++    + + V G + +++ G  GL++ IG   +      E+
Sbjct: 141  SKKR-----AQYERAWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEM 193

Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
            + +    P  G +    ++ K++E+ +      +V LS R+ L+   S   S+       
Sbjct: 194  RRVRDLQPYVGKE----IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF------ 240

Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1414
                   +  L    + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +
Sbjct: 241  -------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEV 292

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGL 1473
            G  V   VL V+   +RV ++LK +      Q      +  H +G IV G++ ++  +G 
Sbjct: 293  GNEVTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGA 347

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            F+ +E   + GL H+SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 348  FVRVEE-GIEGLVHISELAERHVEVPDQVVGVGDDALVKVIDIDLERRRISLSLKQA 403



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 148/377 (39%), Gaps = 50/377 (13%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 63  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 122

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 123 EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 182

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 183 RGFLPASL--------VEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 234

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 235 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 293

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 294 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 329

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 922
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 330 ---AIGQIVPGKVTKLVPFGAFVRVEE--GIEGLVHISELAERHVEVPDQVVGVGDDALV 384

Query: 923 AILDVAKAERLVDLSLK 939
            ++D+    R + LSLK
Sbjct: 385 KVIDIDLERRRISLSLK 401



 Score = 46.6 bits (109), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 74  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 133

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 134 KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 189

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 190 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 245

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 246 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 299

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 300 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 355

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 356 EGLVHISELAERHVEVPDQVVGVGDDALVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 413

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 414 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 445


>gi|323356451|ref|YP_004222847.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
 gi|323272822|dbj|BAJ72967.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
          Length = 484

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 172/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  + G V K+D +  LL +       + ++   +    +P+E+       ++G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPNEV------VNVGDHVEAL 91

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1278
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVEK------IKENDGVVTGSVIEVVKG--GLI 141

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V IG   +      EL+ +    P  G    Q ++ K+LE+ +      +V LS R+ L+
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG----QEIEAKILELDKNRN---NVVLSRRALLE 194

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
               S + +               + +L    + +G V ++ + G F+ L   +D  V +S
Sbjct: 195  QTQSESRTTF-------------LNNLHKGQVRKGTVSSIVNFGAFVDLG-GVDGLVHVS 240

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  ++E   +   +G+ V   +L V+   +RV ++LK +      +      +  H +
Sbjct: 241  ELSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKAT-----QEDPWQVFARTHAI 295

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G I  G++ ++  +G F+ + +  + GL H+SELS  HV+  E +   GE+V VKI+ +D
Sbjct: 296  GQIAPGKVTKLVPFGAFVRVAD-GIEGLVHISELSGKHVELAEQVVSVGEEVFVKIIDID 354

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 355  LERRRISLSLKQA 367



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V KG V ++ +FGA V   GGV  L  +  +S   I    +  +VG E+   +L V  
Sbjct: 211 GQVRKGTVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDL 269

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      I  G +TK+   G FVR  +G++G    S
Sbjct: 270 DRERVSLSLKATQEDPWQVFARTHAIGQ---IAPGKVTKLVPFGAFVRVADGIEGLVHIS 326

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           EL          +  VG+ V  +I+      RRI+LS 
Sbjct: 327 ELSGKHVELAEQVVSVGEEVFVKIIDIDLERRRISLSL 364



 Score = 50.8 bits (120), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 155/352 (44%), Gaps = 33/352 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +++G V+ +D    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPNEVVNVGDHVEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVEKIKE-NDGVVT-GSVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R +  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRTTFLNNLH 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  G V  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGTVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    +  G V  ++  G FVR    +
Sbjct: 264 ILEVDLDRERVSLSLKATQEDPWQVF----ARTHAIGQIAPGKVTKLVPFGAFVRVADGI 319

Query: 786 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            G    S+ + G+  +L+ +   VG+ V   I+D++ E  RI+LSLKQ+  S
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGEEVFVKIIDIDLERRRISLSLKQANES 370


>gi|429729646|ref|ZP_19264303.1| 30S ribosomal protein S1 [Corynebacterium durum F0235]
 gi|429149040|gb|EKX92030.1| 30S ribosomal protein S1 [Corynebacterium durum F0235]
          Length = 491

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 182/397 (45%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEDFLAAVDATIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+        +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPGEV------VQVGDEIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +   DP  G    Q ++ 
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG----QEIEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 170  KIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGV 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H VG IV G++ ++  +G F+ +E   + GL H+SEL+E
Sbjct: 273  SLKAT-----MEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAE 326

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  + +    E+  VK++ +D E+RRISL +K +
Sbjct: 327  RHVEVPDQVVGVNEEAMVKVIDIDLERRRISLSLKQA 363



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 165/401 (41%), Gaps = 56/401 (13%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVQVGDEIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRF 781
              ++L +D +   + LS K ++ +  +      +  H    +V G V  ++  G FVR 
Sbjct: 256 VTVEVLDVDLDRERVSLSLKATMEDPWRVF----ARTHAVGQIVPGKVTKLVPFGAFVRV 311

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              + G    S+  +       +   V +     ++D++ E  RI+LSLKQ+     D  
Sbjct: 312 EEGIEGLVHISELAERHVEVPDQVVGVNEEAMVKVIDIDLERRRISLSLKQA-----DED 366

Query: 842 FMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           + ++      K  M  S    G+ +          +W+EGF
Sbjct: 367 YTED--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|423408547|ref|ZP_17385696.1| ribosomal protein S1 [Bacillus cereus BAG2X1-3]
 gi|401657637|gb|EJS75145.1| ribosomal protein S1 [Bacillus cereus BAG2X1-3]
          Length = 382

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 185/406 (45%), Gaps = 53/406 (13%)

Query: 1152 SKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH 1211
            +K + +  ++ +G  VTG V KV+ +  L+ +        +  D     SEL       H
Sbjct: 6    NKEVMDSKELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVH 54

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISK 1269
            I KA    V+ +++  +L  + L      +S + VD       +Q     G +    +  
Sbjct: 55   IEKA--SDVVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVALQEKFTSGHVFDVTVKD 112

Query: 1270 ILSGVGGLVVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
            I++G  GLVV +G     P     VH+ E          + Y +G+ +  K++E+ R   
Sbjct: 113  IVNG--GLVVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE-- 159

Query: 1325 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1384
                V LS ++ ++             ++   K  E I  L    +V+G V+ +T  G F
Sbjct: 160  -KNRVILSHKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAF 205

Query: 1385 IMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1444
            + +   +D  V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +     
Sbjct: 206  VNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPW 264

Query: 1445 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYR 1504
                 N    + VGDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +  
Sbjct: 265  E----NVAGEIKVGDIREGVVKRLATFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLE 319

Query: 1505 AGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
             G++VKVK+L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 320  MGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          ++   +  D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKVGD--IREGVVKRLATFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354


>gi|399523751|ref|ZP_10764360.1| 30S ribosomal protein S1 [Atopobium sp. ICM58]
 gi|398375296|gb|EJN52731.1| 30S ribosomal protein S1 [Atopobium sp. ICM58]
          Length = 478

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 184/400 (46%), Gaps = 45/400 (11%)

Query: 1138 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1191
            ++     + +++IGS+  L    D +I     G  V G V KVD++  LL I    K + 
Sbjct: 1    MTTNTPQVAINDIGSEADLIAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEG 58

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
             IL                 +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 59   VILSRELSIKHDVNPDDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 111

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 112  KIEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 165

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   ++              +  L    + 
Sbjct: 166  IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LHTLQKGQVR 209

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +R
Sbjct: 210  SGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRER 268

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SE
Sbjct: 269  VSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISE 322

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L++ HV+  + + + GE+V VK++ +D E+RRISL +K +
Sbjct: 323  LAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 143/367 (38%), Gaps = 56/367 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G + K++     +      +G     EL +     P  +  VG  ++  ++      
Sbjct: 35  IVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKEDKE 94

Query: 648 RRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 699
            R+ LS           K  +V E+D      +V+G V  V    +++ +  +G+   ++
Sbjct: 95  GRLLLSKKRAQYERAWGKIEKVKEED-----GVVTGTVIEVVKGGLILDIGLRGFLPASL 149

Query: 700 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
                   +E   V       G E + +++ LD   +N++LS +  L  +  ++ ++  H
Sbjct: 150 --------VEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLH 201

Query: 759 -IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
            +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L
Sbjct: 202 TLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 260

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
           DV+ +  R++LSLK +      A F + H                           IG V
Sbjct: 261 DVDMDRERVSLSLKATQEDPWQA-FARTH--------------------------AIGQV 293

Query: 878 IEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAER 932
           + GKV +   FG  V  E+  +    I+     H +L    V+ G  +   ++D+    R
Sbjct: 294 VPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERR 353

Query: 933 LVDLSLK 939
            + LSLK
Sbjct: 354 RISLSLK 360



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 33  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKED 92

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLLLSKKRAQYERAWGKIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 204

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 259 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 313

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 45.4 bits (106), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 131/293 (44%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R      +IG+ 
Sbjct: 107  ERAWGKIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLAPYIGRE 165

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++  + + T + +G +  G +S I++   
Sbjct: 166  IEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLHT-LQKGQVRSGVVSSIVNF-- 219

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 220  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 275

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 276  TQE---------------DPWQAFARTHAIG--QVVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE P++   +G+ V  +V+ ++   +R+ ++LK ++      SE
Sbjct: 319  HISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQANEGVDPNSE 371


>gi|154508851|ref|ZP_02044493.1| hypothetical protein ACTODO_01361 [Actinomyces odontolyticus ATCC
            17982]
 gi|293192694|ref|ZP_06609648.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
 gi|399526549|ref|ZP_10766316.1| 30S ribosomal protein S1 [Actinomyces sp. ICM39]
 gi|153798485|gb|EDN80905.1| 30S ribosomal protein S1 [Actinomyces odontolyticus ATCC 17982]
 gi|292820201|gb|EFF79198.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
 gi|398362900|gb|EJN46562.1| 30S ribosomal protein S1 [Actinomyces sp. ICM39]
          Length = 478

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 184/400 (46%), Gaps = 45/400 (11%)

Query: 1138 LSIKPSMLTVSEIGSKL-LFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1191
            ++     + +++IGS+  L    D +I     G  V G V KVD++  LL I    K + 
Sbjct: 1    MTTNTPQVAINDIGSEADLIAAIDETIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEG 58

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
             IL                 +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 59   VILSRELSIKHDVNPDDVVAVGDQIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 111

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 112  QIEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 165

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   ++              +  L    + 
Sbjct: 166  IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LHTLQKGQVR 209

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +R
Sbjct: 210  SGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRER 268

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SE
Sbjct: 269  VSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISE 322

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L++ HV+  + + + GE+V VK++ +D E+RRISL +K +
Sbjct: 323  LAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 143/367 (38%), Gaps = 56/367 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G + K++     +      +G     EL +     P  +  VG  ++  ++      
Sbjct: 35  IVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKEDKE 94

Query: 648 RRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI 699
            R+ LS           +  +V E+D      +V+G V  V    +++ +  +G+   ++
Sbjct: 95  GRLLLSKKRAQYERAWGQIEKVKEED-----GVVTGTVIEVVKGGLILDIGLRGFLPASL 149

Query: 700 PTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH 758
                   +E   V       G E + +++ LD   +N++LS +  L  +  ++ ++  H
Sbjct: 150 --------VEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLH 201

Query: 759 -IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
            +    V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L
Sbjct: 202 TLQKGQVRSGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVL 260

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
           DV+ +  R++LSLK +      A F + H                           IG V
Sbjct: 261 DVDMDRERVSLSLKATQEDPWQA-FARTH--------------------------AIGQV 293

Query: 878 IEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAER 932
           + GKV +   FG  V  E+  +    I+     H +L    V+ G  +   ++D+    R
Sbjct: 294 VPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERR 353

Query: 933 LVDLSLK 939
            + LSLK
Sbjct: 354 RISLSLK 360



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P     VG ++   VL  + 
Sbjct: 33  GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGDQIEALVLQKED 92

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLLLSKKRAQYERAWGQIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++G+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHTLQ 204

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR    
Sbjct: 259 VLDVDMDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDG 313

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQA 362



 Score = 45.1 bits (105), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 131/293 (44%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R      +IG+ 
Sbjct: 107  ERAWGQIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLAPYIGRE 165

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++  + + T + +G +  G +S I++   
Sbjct: 166  IEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLHT-LQKGQVRSGVVSSIVNF-- 219

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 220  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 275

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 276  TQE---------------DPWQAFARTHAIG--QVVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE P++   +G+ V  +V+ ++   +R+ ++LK ++      SE
Sbjct: 319  HISELAQRHVELPDQVVKVGEEVFVKVIDIDLERRRISLSLKQANEGVDPTSE 371


>gi|339444205|ref|YP_004710209.1| hypothetical protein EGYY_05950 [Eggerthella sp. YY7918]
 gi|338903957|dbj|BAK43808.1| hypothetical protein EGYY_05950 [Eggerthella sp. YY7918]
          Length = 424

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 147/294 (50%), Gaps = 37/294 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            G++V G + +++ G  GL++ IG   +      +L+ +   D     +    ++ +V+E+
Sbjct: 121  GEVVTGEVIEVVKG--GLILDIGLRGFLPASLVDLRRVKDLDMYLNTE----IEARVIEM 174

Query: 1320 SRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1378
             R      +V LS R  L+ G  +  +  LS               L+  M ++G V ++
Sbjct: 175  DRN---RNNVVLSRRVLLEEGRKNERAEILSK--------------LTKGMRLKGTVSSI 217

Query: 1379 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
               G F+ L   +D  V +S LS  +V  P +   +G  V   VL V+   +R+ + LK 
Sbjct: 218  VDFGAFVDLG-GIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDLQRERISLGLK- 275

Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
               +T     I  + +  VG IV G++ ++  +G FI +   ++ GL H+SE++  H+D 
Sbjct: 276  ---QTTEDPWIKLVESYPVGSIVDGKVTKIVPFGAFIEL-GQSIEGLVHISEMAMKHIDT 331

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIE 1552
               + +AG++VKVK+++++ E+RRISL MK++         ++  E E DE+I+
Sbjct: 332  PAQVVKAGDEVKVKVMEINPERRRISLSMKAAAS-------ELGFEIEVDESIQ 378



 Score = 71.6 bits (174), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +  GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 202 SKLTKGMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEV 260

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V  + +RI++  K+T     + ++ SY   +   I  G +TKI   G F+     ++G
Sbjct: 261 LDVDLQRERISLGLKQTTEDPWIKLVESYPVGS---IVDGKVTKIVPFGAFIELGQSIEG 317

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+ +     P+ +   G  VK ++M   P  RRI+LS 
Sbjct: 318 LVHISEMAMKHIDTPAQVVKAGDEVKVKVMEINPERRRISLSM 360



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 74/366 (20%), Positives = 149/366 (40%), Gaps = 52/366 (14%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     V      +G  P  EL +    +PS + ++G  ++  ++      
Sbjct: 36  LVDGTVVKIEHDEVLVDIGFKSEGVIPSRELSIRKDADPSDIVNLGDKIEALVLQKEDKD 95

Query: 648 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            R+ LS     +     RV E    K G +V+G V  V    +++ +  +G+   ++   
Sbjct: 96  GRLILSKKRAEYERAWIRVEEK--FKAGEVVTGEVIEVVKGGLILDIGLRGFLPASLVDL 153

Query: 703 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 761
                L+    + + I+      +++ +D   +N++LS +  L    +   ++  S +  
Sbjct: 154 RRVKDLD--MYLNTEIEA-----RVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLTK 206

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+ 
Sbjct: 207 GMRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDL 265

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
           +  RI+L LKQ+                                +K VE + +GS+++GK
Sbjct: 266 QRERISLGLKQTTEDPW---------------------------IKLVESYPVGSIVDGK 298

Query: 882 VHESNDFGVVVSFEEHSDVYGFITHHQLA-------GATVESGSVIQAAILDVAKAERLV 934
           V +   FG  +   +   + G +   ++A          V++G  ++  ++++    R +
Sbjct: 299 VTKIVPFGAFIELGQS--IEGLVHISEMAMKHIDTPAQVVKAGDEVKVKVMEINPERRRI 356

Query: 935 DLSLKT 940
            LS+K 
Sbjct: 357 SLSMKA 362


>gi|302336104|ref|YP_003801311.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
 gi|301319944|gb|ADK68431.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
          Length = 392

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 176/374 (47%), Gaps = 41/374 (10%)

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
             D   G  VTG V K++++  LL I    K++  I   + E S  ++      +    T 
Sbjct: 29   TDFDEGDLVTGTVVKIEHDEVLLDIG--FKSEGVI--PSRELSIRKDVNPEEVVALGDTI 84

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1276
              L + KE K  RL+L       S K  +     + ++   + G+ V G + +++ G  G
Sbjct: 85   EALVLQKEDKEGRLIL-------SKKRAEYERAWNRVEEKFNAGENVEGEVIEVVKG--G 135

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            L++ IG   +      +L+ +     L+ Y  G  ++ +V+E+ R      +V LS R  
Sbjct: 136  LILDIGLRGFLPASLVDLRRV---KDLNAY-MGTRIEARVIEMDRN---RNNVVLSRRVV 188

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
            L+       S++             +  L P M ++G V ++   G F+ L   +D  + 
Sbjct: 189  LEEARKAERSEI-------------LSKLQPGMRLKGTVSSIVDFGAFVDLG-GIDGLIH 234

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1456
            +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK    +T        +    
Sbjct: 235  ISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK----QTTEDPWRTLVKKYP 290

Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
            VG IV G + ++ ++G F+ +    + GL H+SE+++ HVD    +   G+ V+VK++++
Sbjct: 291  VGAIVEGSVTKLVTFGAFVDL-GDGVEGLVHISEMAKQHVDAPAQVCAVGDTVQVKVMEI 349

Query: 1517 DKEKRRISLGMKSS 1530
            D ++RRISL MK++
Sbjct: 350  DLDRRRISLSMKAA 363



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++PGM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +V
Sbjct: 202 SKLQPGMRLKGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQV 260

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI++  K+T       ++  Y       I  G +TK+   G FV   +GV+G
Sbjct: 261 LDVDLNRERISLGLKQTTEDPWRTLVKKYPVGA---IVEGSVTKLVTFGAFVDLGDGVEG 317

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+       P+ +  VG  V+ ++M      RRI+LS 
Sbjct: 318 LVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDRRRISLSM 360



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 144/369 (39%), Gaps = 58/369 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     +      +G  P  EL +     P  +  +G  ++  ++      
Sbjct: 36  LVTGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDVNPEEVVALGDTIEALVLQKEDKE 95

Query: 648 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            R+ LS     +     RV E      G  V G V  V    +++ +  +G+   ++   
Sbjct: 96  GRLILSKKRAEYERAWNRVEEK--FNAGENVEGEVIEVVKGGLILDIGLRGFLPASLVDL 153

Query: 703 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 761
                L     M + I+      +++ +D   +N++LS +  L  + +   S+  S + P
Sbjct: 154 RRVKDLN--AYMGTRIEA-----RVIEMDRNRNNVVLSRRVVLEEARKAERSEILSKLQP 206

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              + G V +I++ G FV  LG + G    S+         S+   VGQ V   +LDV+ 
Sbjct: 207 GMRLKGTVSSIVDFGAFVD-LGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDL 265

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVI 878
              RI+L LKQ+                              +E  W   V+ + +G+++
Sbjct: 266 NRERISLGLKQT------------------------------TEDPWRTLVKKYPVGAIV 295

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAE 931
           EG V +   FG  V   +   V G +   ++A   V++       G  +Q  ++++    
Sbjct: 296 EGSVTKLVTFGAFVDLGDG--VEGLVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDR 353

Query: 932 RLVDLSLKT 940
           R + LS+K 
Sbjct: 354 RRISLSMKA 362


>gi|32472024|ref|NP_865018.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
 gi|32397396|emb|CAD72702.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH 1]
          Length = 691

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 182/382 (47%), Gaps = 61/382 (15%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKA 1215
            ++ +GQ   G V  + +  A + +   +   L I D A+E    P+E+        I + 
Sbjct: 310  ELEVGQIRKGIVKNIADFGAFVDLG-GIDGLLHITDMAWERIGHPTEM------LSIDQE 362

Query: 1216 VTGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +   VL I++EK+ + L L+     P+++        I        +H G++V      +
Sbjct: 363  IEVKVLHIDREKQKIALGLKQKDRNPWEN--------IETKYPVESVHPGEVV-----NV 409

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
            +S   G  V++ P + G VH +E+     V+ P    + G  +   +L +    +     
Sbjct: 410  MSY--GAFVKLEPGIEGLVHISEMSWTKRVNHPSELVNIGDKIDVMILGVDPEGQ----- 462

Query: 1330 ELSLRSSLDGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
            +LSL     GM  T  N  D            E +E       V+G V+N+T+ G FI L
Sbjct: 463  QLSL-----GMKQTLKNPWD------------EVLERYPEGKDVKGKVRNLTNYGAFIEL 505

Query: 1388 SRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1446
               +D  + +S++S    +  P +    G+ +  R+LSV+   +R+ + LK  D+     
Sbjct: 506  EEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDN-DPWD 564

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
             +I +      G +V G++ ++ ++G+FI +E+  L GL H+SEL+E  V++ E + + G
Sbjct: 565  GDIPD--KYQPGQLVKGEVTKITNFGVFIGLED-GLEGLLHISELAEHKVEDPEEVVKVG 621

Query: 1507 EKVKVKILKVDKEKRRISLGMK 1528
            + ++VK+L+VD ++R+I L +K
Sbjct: 622  DPIEVKVLRVDTDERKIGLSLK 643



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 182/389 (46%), Gaps = 47/389 (12%)

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1216
            E+ D + G+ V G + ++++EWAL+ +    K++  +    + P E Q       IG  V
Sbjct: 132  EQQDYNSGKIVDGRIVELNDEWALVDVG--FKSEGTVGLDEWGPEEDQP-----KIGDTV 184

Query: 1217 TGHVLSINKEKKLLRLVLRPF-QDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSG 1273
               +  +  E   L     P+    +S +  +  I  + M   + EG +V G + + + G
Sbjct: 185  KVLIEEMEDE---LGAADDPYGMISLSKRKAEKIIEWEAMMETVAEGQVVTGTVIRKIKG 241

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE-GQFVKCKVLEISRTVRGTFHVELS 1332
              GL+V IG ++     F     + +  P    D  G+ V+ +VL+I  T R   ++ +S
Sbjct: 242  --GLLVDIGVNV-----FLPGSQVDIRRPGDIGDFIGRVVQAEVLKIDDTRR---NIVIS 291

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             RS ++     + + L             +++L    I +G VKN+   G F+ L   +D
Sbjct: 292  RRSLIERQREEDRAYL-------------MQELEVGQIRKGIVKNIADFGAFVDLG-GID 337

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-N 1451
              + +++++   +  P +   I + +  +VL ++   +++ + LK  D       E    
Sbjct: 338  GLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIETKYP 397

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVK 1510
            + ++H G++V      V SYG F+ +E   + GL H+SE+S    V++   +   G+K+ 
Sbjct: 398  VESVHPGEVV-----NVMSYGAFVKLE-PGIEGLVHISEMSWTKRVNHPSELVNIGDKID 451

Query: 1511 VKILKVDKEKRRISLGMKSSYFKNDADNL 1539
            V IL VD E +++SLGMK +  KN  D +
Sbjct: 452  VMILGVDPEGQQLSLGMKQT-LKNPWDEV 479



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 171/469 (36%), Gaps = 71/469 (15%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           V  G VV G VI     G +V    GV    P    S+ +I +PG       + + RV+ 
Sbjct: 225 VAEGQVVTGTVIRKIKGGLLVDI--GVNVFLP---GSQVDIRRPGDI----GDFIGRVVQ 275

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 607
            +  +I  T +  ++  +  I     E    L        I  G +  I   G FV    
Sbjct: 276 AEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDL-G 334

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           G+ G    +++  +    P+ M  + Q ++ +++      ++I L    K     E+   
Sbjct: 335 GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIET 394

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------G 721
           K        V+ V P  VV  +    + K     E L  H+   +  K V  P      G
Sbjct: 395 KY------PVESVHPGEVVNVMSYGAFVKLEPGIEGLV-HISEMSWTKRVNHPSELVNIG 447

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            + D  +L +D E   L L  K +L N   ++            V G V N+   G F+ 
Sbjct: 448 DKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV---LERYPEGKDVKGKVRNLTNYGAFIE 504

Query: 781 FLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
               + G    S     ++ A  S+    GQ +   IL V+ +  RI L LKQ      D
Sbjct: 505 LEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDNDPWD 564

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                +                          +  G +++G+V +  +FGV +  E+   
Sbjct: 565 GDIPDK--------------------------YQPGQLVKGEVTKITNFGVFIGLEDG-- 596

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 941
           + G +   +LA   VE        G  I+  +L V   ER + LSLK V
Sbjct: 597 LEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 645



 Score = 47.8 bits (112), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 89/412 (21%), Positives = 167/412 (40%), Gaps = 70/412 (16%)

Query: 189 VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 248
           +G++V   VL++DD ++ I   +  L  R     +   ++ ++ G +    VK+I D G 
Sbjct: 270 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 329

Query: 249 ILHFGLPSFTGFL------------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 296
            +  G     G L            P   L+ +  I+VK        V  IDR ++ + L
Sbjct: 330 FVDLG--GIDGLLHITDMAWERIGHPTEMLSIDQEIEVK--------VLHIDREKQKIAL 379

Query: 297 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
                D +      TK      ++ + PG +V+     ++  G  +       G V I  
Sbjct: 380 GLKQKDRNPWENIETK----YPVESVHPGEVVN-----VMSYGAFVKLEPGIEGLVHISE 430

Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSH--- 404
           +  T    +     N   K++  IL VDP  + + L +     NP+  +  R P      
Sbjct: 431 MSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEVLERYPEGKDVK 490

Query: 405 VKVGDIYDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEG 460
            KV ++ +    + ++ G+  LL +     +  ++ P+ V            LEK    G
Sbjct: 491 GKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEV------------LEK----G 534

Query: 461 SCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
             +  RIL     R    L    L    ++G +      +PG +VKG+V  + +FG  + 
Sbjct: 535 QEIECRILSVDEQRRRIALGLKQLDNDPWDGDI--PDKYQPGQLVKGEVTKITNFGVFIG 592

Query: 518 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKK 567
              G++ L  +  ++E ++  P +  KVG  +  +VL V +  ++I ++ K+
Sbjct: 593 LEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKR 644


>gi|378548483|ref|ZP_09823699.1| hypothetical protein CCH26_00290 [Citricoccus sp. CH26A]
          Length = 484

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 177/373 (47%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD +  LL I       + ++   +    +P E+        +G  V   
Sbjct: 35   GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEV------VAVGDNVEAL 88

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +  +++    E  +V G + +++ G  GL+V
Sbjct: 89   VLT--KEDKEGRLILSKKR-----AQYERAWGSIEKIKEEDGVVTGTVIEVVKG--GLIV 139

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 140  DIGLRGFLPASLVEMRRVRDLAPYIG----QELEAKIIELDKNRN---NVVLSRRAWLEQ 192

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+           L K+E      +  G V ++ + G F+ L   +D  V +S 
Sbjct: 193  TQSEVRSNF----------LHKLE---KGQVRTGTVSSIVNFGAFVDLG-GVDGLVHVSE 238

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL-SNLH-V 1457
            LS  +++ P +   +G+ V   VL V+   +RV ++LK      A+Q +   L +  H +
Sbjct: 239  LSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLK------ATQEDPWQLFARTHAL 292

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ +E+  + GL H+SEL+  H+D  E +    +++ VK++ +D
Sbjct: 293  GQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELASRHIDTAEQVVSVNDELFVKVIDID 351

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 352  LERRRISLSLKQA 364



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 146/348 (41%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 35  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVAVGDNVEALVLTKED 94

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGSIEKIKE-EDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 150

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 151 LVEMRRVRDLAP----YIGQELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSNFLHKLE 206

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + +G V  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRTGTVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 260

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 261 VLEVDMDRERVSLSLKATQEDPWQLF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 316

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 317 EGLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSLKQA 364


>gi|373486910|ref|ZP_09577581.1| SSU ribosomal protein S1P [Holophaga foetida DSM 6591]
 gi|372010863|gb|EHP11466.1| SSU ribosomal protein S1P [Holophaga foetida DSM 6591]
          Length = 585

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 137/289 (47%), Gaps = 35/289 (12%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGY-DEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            G  V++ P + G VH +E+          G  + G  V+  +L++    R         R
Sbjct: 319  GAFVELEPGVEGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQVDVESR---------R 369

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
             SL GM             TP   +E  E  +   IV G V+N+T  G F+ L   +D  
Sbjct: 370  ISL-GMKQV----------TPNPWMEVAEKYNIGQIVTGTVRNITEFGAFVELEEGIDGL 418

Query: 1395 VLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1453
            + +S+ S    ++ P +    G  V  +VL+++PL++R+ + +K  +     Q       
Sbjct: 419  IHVSDFSWTKKIKHPGEVVKKGDSVTAKVLNLDPLNQRMSLGVKQMEPNVWEQF----FD 474

Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
               VGD V G+I R+  +G F+ + +  + GL HVSELS   V++I+  +   +++ +KI
Sbjct: 475  GHRVGDTVTGKIARLTDFGAFVDLGD-GIEGLVHVSELSRKRVEDIQKEFTTAQELTMKI 533

Query: 1514 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSL 1562
            +K+D  + RI L +K   ++ D +  +M      DEA  ++  + +++L
Sbjct: 534  VKLDPTEHRIGLSVKQ--YETDLEKGEM------DEARAKMEPFKKATL 574



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 118/257 (45%), Gaps = 31/257 (12%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSG--YDEGQFVKCKVLEISRTVRGTFHVELS 1332
            GGL V IG   +      ++K +   DP  G  YD       KV++++R  RG   +   
Sbjct: 147  GGLAVDIGIRAFLPGSQVDVKPVRNLDPYLGKSYD------MKVIKVNRR-RGNIVLSRK 199

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
            L      M + N+S             E +  L    +V+G VKN+T  G FI L   +D
Sbjct: 200  LF-----METINAS----------LKEETLAGLEEGKLVEGTVKNITEYGAFIDLG-GVD 243

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              + ++++S G +  P + F +G  V   +L  +  ++RV +  K   +      E    
Sbjct: 244  GLLHITDMSWGRLNHPSEMFQVGDKVEVAILKYDKDTERVSLGYKQKFADPWLTVEERFP 303

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKV 1511
             N  V     G++  +  YG F+ +E   + GL HVSE+S    V + + +   G+ V+ 
Sbjct: 304  MNASVK----GKVVSITDYGAFVELE-PGVEGLVHVSEMSWTKKVKSAKGMVNLGDMVEA 358

Query: 1512 KILKVDKEKRRISLGMK 1528
             IL+VD E RRISLGMK
Sbjct: 359  VILQVDVESRRISLGMK 375



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 148/352 (42%), Gaps = 26/352 (7%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T + ++ G +V+G V  +  +GA +   GGV  L  +  MS   +  P + F+VG ++  
Sbjct: 213 TLAGLEEGKLVEGTVKNITEYGAFIDL-GGVDGLLHITDMSWGRLNHPSEMFQVGDKVEV 271

Query: 552 RVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            +L     ++R+++ +K+      L +   +          G +  I  +G FV    GV
Sbjct: 272 AILKYDKDTERVSLGYKQKFADPWLTVEERFPMNAS---VKGKVVSITDYGAFVELEPGV 328

Query: 610 QGFAPRSELGLDPGCEPS-SMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSE-DDL 666
           +G    SE+      + +  M ++G +V+  I+     SRRI+L    + P    E  + 
Sbjct: 329 EGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQVDVESRRISLGMKQVTPNPWMEVAEK 388

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPG 721
             +G +V+G V  +T     V +      +G     H++D      ++H      V+K G
Sbjct: 389 YNIGQIVTGTVRNITEFGAFVEL-----EEGIDGLIHVSDFSWTKKIKHPG---EVVKKG 440

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
                ++L LD  +  + L  K    N  +Q   D   +     V G +  + + G FV 
Sbjct: 441 DSVTAKVLNLDPLNQRMSLGVKQMEPNVWEQF-FDGHRV--GDTVTGKIARLTDFGAFVD 497

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               + G    S+    +  D+ K +   Q +   I+ ++    RI LS+KQ
Sbjct: 498 LGDGIEGLVHVSELSRKRVEDIQKEFTTAQELTMKIVKLDPTEHRIGLSVKQ 549



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 162/414 (39%), Gaps = 68/414 (16%)

Query: 721  GYEFD-QLLVLDNESSNLLLSAKYSL--INSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
            G  +D +++ ++    N++LS K  +  IN++ +  + A  +    +V G V NI E G 
Sbjct: 177  GKSYDMKVIKVNRRRGNIVLSRKLFMETINASLKEETLAG-LEEGKLVEGTVKNITEYGA 235

Query: 778  FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            F+  LG + G    +    G+    S+ + VG  V   IL  + +T R++L  KQ     
Sbjct: 236  FID-LGGVDGLLHITDMSWGRLNHPSEMFQVGDKVEVAILKYDKDTERVSLGYKQK---- 290

Query: 838  TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
                F      +EE+  M  S                   ++GKV    D+G  V  E  
Sbjct: 291  ----FADPWLTVEERFPMNAS-------------------VKGKVVSITDYGAFVELEPG 327

Query: 897  -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
                 H     +    + A   V  G +++A IL V    R + L +K V  + +     
Sbjct: 328  VEGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQVDVESRRISLGMKQVTPNPW----- 382

Query: 952  NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ--- 1008
                       E ++   + Q V   V  + E    + L E     G   VSD++     
Sbjct: 383  ----------MEVAEKYNIGQIVTGTVRNITEFGAFVELEEGID--GLIHVSDFSWTKKI 430

Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQ 1068
            K P +    G SV A V+ L   +   R+ L +K     +   +   +    + VG  V 
Sbjct: 431  KHPGEVVKKGDSVTAKVLNLDPLNQ--RMSLGVK-----QMEPNVWEQFFDGHRVGDTVT 483

Query: 1069 AEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
             +I  +      +  G G  G +H++E++  +   VE++   F   Q +T +I+
Sbjct: 484  GKIARLTDFGAFVDLGDGIEGLVHVSELSRKR---VEDIQKEFTTAQELTMKIV 534



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
             L+ L  G +V G +K +  YG FI +   +  GL H++++S   +++   +++ G+KV+
Sbjct: 213  TLAGLEEGKLVEGTVKNITEYGAFIDLGGVD--GLLHITDMSWGRLNHPSEMFQVGDKVE 270

Query: 1511 VKILKVDKEKRRISLGMKSSY 1531
            V ILK DK+  R+SLG K  +
Sbjct: 271  VAILKYDKDTERVSLGYKQKF 291



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 107/507 (21%), Positives = 188/507 (37%), Gaps = 95/507 (18%)

Query: 189 VGQLVSCIVLQLDD-------DKKEIGKRKIW----LSLRLSLLYKGLSLETVQEGMVLT 237
           VG +V  +V  L+D        ++   K KIW     + R ++   G+ LE V+ G+ + 
Sbjct: 93  VGDVVEVLVEHLEDVNGNVRLSRERAEKMKIWDEVEKAFRSNMTVHGVVLEKVKGGLAVD 152

Query: 238 AYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDR 289
             +++                 FLP       S +DVKP        G      V  ++R
Sbjct: 153 IGIRA-----------------FLP------GSQVDVKPVRNLDPYLGKSYDMKVIKVNR 189

Query: 290 TRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTV 349
            R  + LS       + +   LK  ++  L  G +V   V++I E G  +       G V
Sbjct: 190 RRGNIVLSRK--LFMETINASLKEETLAGLEEGKLVEGTVKNITEYGAFIDL-----GGV 242

Query: 350 D-IFHLQN-TFPTTNWKNDYNQ-HKKVNARILFVDPTSRAVGLTL-----NPYLLHNRAP 401
           D + H+ + ++   N  ++  Q   KV   IL  D  +  V L       +P+L      
Sbjct: 243 DGLLHITDMSWGRLNHPSEMFQVGDKVEVAILKYDKDTERVSLGYKQKFADPWLTVEERF 302

Query: 402 PSHV----KVGDIYDQSKVVRVDRGLGLLLDIPSTPV-----STPAYVTISDVAEEEVRK 452
           P +     KV  I D    V ++ G+  L+ +          S    V + D+ E  + +
Sbjct: 303 PMNASVKGKVVSITDYGAFVELEPGVEGLVHVSEMSWTKKVKSAKGMVNLGDMVEAVILQ 362

Query: 453 LEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSF 512
           ++ + +  S    ++     +E                        G +V G V  +  F
Sbjct: 363 VDVESRRISLGMKQVTPNPWME-----------------VAEKYNIGQIVTGTVRNITEF 405

Query: 513 GAIVQFPGGVKALCPLPHMSEFEIVK----PGKKFKVGAELVFRVLGVK--SKRITVTHK 566
           GA V+   G+  L    H+S+F   K    PG+  K G  +  +VL +   ++R+++  K
Sbjct: 406 GAFVELEEGIDGLI---HVSDFSWTKKIKHPGEVVKKGDSVTAKVLNLDPLNQRMSLGVK 462

Query: 567 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEP 626
           +            +          G I ++   G FV   +G++G    SEL      + 
Sbjct: 463 QMEPNVWEQFFDGHRVGD---TVTGKIARLTDFGAFVDLGDGIEGLVHVSELSRKRVEDI 519

Query: 627 SSMYHVGQVVKCRIMSSIPASRRINLS 653
              +   Q +  +I+   P   RI LS
Sbjct: 520 QKEFTTAQELTMKIVKLDPTEHRIGLS 546


>gi|559914|emb|CAA86365.1| 30S ribosomal protein S1 [Mycobacterium leprae]
          Length = 482

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 172/371 (46%), Gaps = 47/371 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + A+   +    +P+E+        +G  V   
Sbjct: 36   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEV------VSVGDEVEAL 89

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 90   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEALKEKDEAVKGIVIEVVKG--GLIL 140

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 141  DIGLRGFLPASLVEMRRVRDLQPYIGKE----IEAKIIELDKN---RNNVVLSRRAWLEQ 193

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    I +G V ++ + GC +  S  +D  V +S 
Sbjct: 194  TQSEVRSEF-------------LNQLQKGAIRKGVVSSIVNFGC-VCRSGGVDGLVHVSE 239

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +    + +  H +G
Sbjct: 240  LSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIG 294

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+   VK++ +D 
Sbjct: 295  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDL 353

Query: 1519 EKRRISLGMKS 1529
            E+RRISL +K+
Sbjct: 354  ERRRISLSLKA 364



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            IGK +  +++ ++     V ++ +    +T S+     L+ L  G I  G +  + ++G 
Sbjct: 165  IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGC 224

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
                 +  + GL HVSELS  H+D+   + + G +V V++L VD ++ R+SL +K++
Sbjct: 225  --VCRSGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKAT 279



 Score = 47.8 bits (112), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 144/363 (39%), Gaps = 46/363 (12%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G+V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  GC  R  G + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGCVCRS-GGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK    +  D      HF          +  H            IG ++ GKV
Sbjct: 269 RERVSLSLK---ATQEDP---WRHF----------ARTHA-----------IGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLS 937
            +   FG  V  EE  +    I+     H ++    V  G      ++D+    R + LS
Sbjct: 302 TKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLS 361

Query: 938 LKT 940
           LK 
Sbjct: 362 LKA 364



 Score = 44.3 bits (103), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 146/346 (42%), Gaps = 31/346 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGIVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +     V      G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGCVCR---SGGVDGLVHVSELSWKHIDHPS---EVVQVGNEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            G    S+  +       +   VG      ++D++ E  RI+LSLK
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLK 363


>gi|418053089|ref|ZP_12691165.1| RNA binding S1 domain protein [Mycobacterium rhodesiae JS60]
 gi|353179450|gb|EHB45010.1| RNA binding S1 domain protein [Mycobacterium rhodesiae JS60]
          Length = 484

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 172/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 36   GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VSVGDEVEAL 89

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 90   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEALKEKDEAVKGTVIEVVKG--GLIL 140

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 141  DIGLRGFLPASLVEMRRVRDLQPYIGKE----IEAKIIELDKNRN---NVVLSRRAWLEQ 193

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    I +G V ++ + G F+ L   +D  V +S 
Sbjct: 194  TQSEVRSEF-------------LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 239

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +    + +  H +G
Sbjct: 240  LSWKHIDHPSEVVAVGDEVTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFARTHAIG 294

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+   VK++ +D 
Sbjct: 295  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDL 353

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 354  ERRRISLSLKQA 365



 Score = 48.9 bits (115), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 143/364 (39%), Gaps = 50/364 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + + L +    V G V  V    +++ +  +G+   ++     
Sbjct: 98  GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
              +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKG 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
           ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 AIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
            +   FG  V  EE   + G +   +LA   VE        G      ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359

Query: 936 LSLK 939
           LSLK
Sbjct: 360 LSLK 363



 Score = 48.1 bits (113), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 163/397 (41%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPSKYGMADSYDEAGNYIFPEGFDADTNEWLEGF 407


>gi|347753863|ref|YP_004861427.1| 30S ribosomal protein S1 [Candidatus Chloracidobacterium thermophilum
            B]
 gi|347586381|gb|AEP10911.1| SSU ribosomal protein S1P [Candidatus Chloracidobacterium
            thermophilum B]
          Length = 562

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 161/352 (45%), Gaps = 37/352 (10%)

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
            F+IG  +   VL  ++E++ + L    ++  + D       D +     + DIV GR+  
Sbjct: 240  FNIGDTIQVKVLKFDRERERVSL---GYKQLLPDPW-----DTVTERYRKNDIVKGRVVS 291

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
            +     G  V++   + G VH +E+  +  +  P      G  V+  +LE+    R    
Sbjct: 292  VTDY--GAFVELEEGVEGLVHVSEMTWSKRIKHPSKLVSVGDEVEAMILEVDPANR---- 345

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
                 R SL GM              P       +  S    V G V+N+T  G F+ + 
Sbjct: 346  -----RISL-GMKQIQ----------PNPWDSVAQRYSVGSRVSGKVRNLTDFGAFVEIE 389

Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              +D  + +S+LS    V+ P      G+ V   + +++  ++R+ +++K  +     + 
Sbjct: 390  DGIDGLIHVSDLSWTKRVKHPSDVLKKGQSVEAIITNIDTANRRLSLSIKDLEPNAWERF 449

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
                  +  VGD+V G++ R+  +G+F+ +E   + GLCH+SELS+  VD  E++   G+
Sbjct: 450  ----FQSHRVGDVVTGKVVRLAGFGVFVELEE-GIEGLCHISELSDQRVDRPESVVSVGQ 504

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNR 1559
             +  KILK+D+  R+I L  ++   +ND +++      ES  ++ EV  + R
Sbjct: 505  VLPFKILKLDESNRKIGLSARAVGKENDPEDVSNYLNNESMTSLGEVARFLR 556



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 13/176 (7%)

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            +  E +  L  N+IV G VKN+T  G FI L   +D  + ++++S G +  P   F IG 
Sbjct: 186  RKAETLRMLDENVIVSGQVKNLTDYGAFIDLG-GIDGLLHVTDMSWGRLPKPSDMFNIGD 244

Query: 1417 LVAGRVLSVEPLSKRVEVTLKT---SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
             +  +VL  +   +RV +  K        T ++    N       DIV G++  V  YG 
Sbjct: 245  TIQVKVLKFDRERERVSLGYKQLLPDPWDTVTERYRKN-------DIVKGRVVSVTDYGA 297

Query: 1474 FITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            F+ +E   + GL HVSE++    + +   +   G++V+  IL+VD   RRISLGMK
Sbjct: 298  FVELEE-GVEGLVHVSEMTWSKRIKHPSKLVSVGDEVEAMILEVDPANRRISLGMK 352



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 151/346 (43%), Gaps = 32/346 (9%)

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--K 557
           ++V G+V  +  +GA +   GG+  L  +  MS   + KP   F +G  +  +VL    +
Sbjct: 198 VIVSGQVKNLTDYGAFIDL-GGIDGLLHVTDMSWGRLPKPSDMFNIGDTIQVKVLKFDRE 256

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
            +R+++ +K+ L      +   Y +     I  G +  +  +G FV    GV+G    SE
Sbjct: 257 RERVSLGYKQLLPDPWDTVTERYRKND---IVKGRVVSVTDYGAFVELEEGVEGLVHVSE 313

Query: 618 LGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV----KLGSL 672
           +      + PS +  VG  V+  I+   PA+RRI+L   MK  + +  D V     +GS 
Sbjct: 314 MTWSKRIKHPSKLVSVGDEVEAMILEVDPANRRISLG--MKQIQPNPWDSVAQRYSVGSR 371

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGYEFDQL 727
           VSG V  +T     V +       G     H++D      ++H +    V+K G   + +
Sbjct: 372 VSGKVRNLTDFGAFVEI-----EDGIDGLIHVSDLSWTKRVKHPS---DVLKKGQSVEAI 423

Query: 728 LV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +  +D  +  L LS K    N+ ++     SH     VV G V  +   G FV     + 
Sbjct: 424 ITNIDTANRRLSLSIKDLEPNAWERFFQ--SH-RVGDVVTGKVVRLAGFGVFVELEEGIE 480

Query: 787 GFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLK 831
           G    S+  D QR D  ++   VGQ +   IL ++    +I LS +
Sbjct: 481 GLCHISELSD-QRVDRPESVVSVGQVLPFKILKLDESNRKIGLSAR 525



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 168/393 (42%), Gaps = 61/393 (15%)

Query: 189 VGQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 247
           +G+ ++  +L+L+  +  I   RK+ L   ++   K  +L  + E ++++  VK++ D+G
Sbjct: 153 IGREMTFRILKLNKKRNNIVLSRKVLLEEEMTA-RKAETLRMLDENVIVSGQVKNLTDYG 211

Query: 248 YILHFGLPSFTGFLPRNNLAENSGIDVKP------GLLLQGVVRSIDRTRKVVYLS---- 297
             +  G     G L   +++   G   KP      G  +Q  V   DR R+ V L     
Sbjct: 212 AFIDLG--GIDGLLHVTDMS--WGRLPKPSDMFNIGDTIQVKVLKFDRERERVSLGYKQL 267

Query: 298 -SDP-DTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
             DP DTV++   K+             +V  RV S+ + G  +       G V +  + 
Sbjct: 268 LPDPWDTVTERYRKN------------DIVKGRVVSVTDYGAFVELEEGVEGLVHVSEMT 315

Query: 356 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY--LLHNRAPPSHV--K 406
            +    +     +   +V A IL VDP +R + L +     NP+  +    +  S V  K
Sbjct: 316 WSKRIKHPSKLVSVGDEVEAMILEVDPANRRISLGMKQIQPNPWDSVAQRYSVGSRVSGK 375

Query: 407 VGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRV 465
           V ++ D    V ++ G+  L             + +SD++  + V+      K+G  V  
Sbjct: 376 VRNLTDFGAFVEIEDGIDGL-------------IHVSDLSWTKRVKHPSDVLKKGQSVEA 422

Query: 466 RILGF----RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 521
            I       R L  L+   L+ +A+E    +H   + G VV GKV+ +  FG  V+   G
Sbjct: 423 IITNIDTANRRLS-LSIKDLEPNAWERFFQSH---RVGDVVTGKVVRLAGFGVFVELEEG 478

Query: 522 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
           ++ LC +  +S+  + +P     VG  L F++L
Sbjct: 479 IEGLCHISELSDQRVDRPESVVSVGQVLPFKIL 511



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 6/117 (5%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1471
            IG+ +  R+L +      + ++ K    +  TA ++E   + + +V  IV GQ+K +  Y
Sbjct: 153  IGREMTFRILKLNKKRNNIVLSRKVLLEEEMTARKAETLRMLDENV--IVSGQVKNLTDY 210

Query: 1472 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            G FI +   +  GL HV+++S   +     ++  G+ ++VK+LK D+E+ R+SLG K
Sbjct: 211  GAFIDLGGID--GLLHVTDMSWGRLPKPSDMFNIGDTIQVKVLKFDRERERVSLGYK 265



 Score = 48.1 bits (113), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVG--AELVFRVLG 555
           G  V GKV  +  FGA V+   G+  L  +  +S  + VK P    K G   E +   + 
Sbjct: 369 GSRVSGKVRNLTDFGAFVEIEDGIDGLIHVSDLSWTKRVKHPSDVLKKGQSVEAIITNID 428

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
             ++R++++ K     +      S+       +  G + ++   G FV    G++G    
Sbjct: 429 TANRRLSLSIKDLEPNAWERFFQSHRVGD---VVTGKVVRLAGFGVFVELEEGIEGLCHI 485

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           SEL       P S+  VGQV+  +I+    ++R+I LS
Sbjct: 486 SELSDQRVDRPESVVSVGQVLPFKILKLDESNRKIGLS 523


>gi|423481483|ref|ZP_17458173.1| ribosomal protein S1 [Bacillus cereus BAG6X1-2]
 gi|401144691|gb|EJQ52218.1| ribosomal protein S1 [Bacillus cereus BAG6X1-2]
          Length = 382

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 182/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFADY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    IV+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI+ G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDILEGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365


>gi|62185082|ref|YP_219867.1| 30S ribosomal protein S1 [Chlamydophila abortus S26/3]
 gi|62148149|emb|CAH63906.1| 30s ribosomal protein S1 [Chlamydophila abortus S26/3]
          Length = 581

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 177/379 (46%), Gaps = 58/379 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 272  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNI-CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                G  ++I   + G +H +E+  +  V DP    ++G  V+  VL I +        +
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKD-----EGK 369

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            +SL     G+  T  +        P  ++E  E     + V+  +KN+T+ G F+ L   
Sbjct: 370  ISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 1391 LDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
            ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +K   S   ++ E 
Sbjct: 415  IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNEIE- 473

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
                    G ++ G + ++ ++G F+ ++N  + GL HVSELSE     IE I   G+ V
Sbjct: 474  ---EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFSKIEDIISIGDSV 529

Query: 1510 KVKILKVDKEKRRISLGMK 1528
              K++K+D + +++SL +K
Sbjct: 530  SAKVIKLDPDHKKVSLSVK 548



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I + + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 184  ILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  + G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+ +   +L V 
Sbjct: 392 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 451

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 42.7 bits (99), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 283

Query: 827  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 316

Query: 887  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 376

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 377  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 1060
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 423  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 475

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 476  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 532

Query: 1121 IIAKSNKPDMKKSFL 1135
            +I     PD KK  L
Sbjct: 533  VIKLD--PDHKKVSL 545



 Score = 42.4 bits (98), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 191/477 (40%), Gaps = 74/477 (15%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INIDRRNVVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   + G +  ++  G F
Sbjct: 265 LNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRITGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 897 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
                H     +I          + GS+++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNE 471



 Score = 41.2 bits (95), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 560
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 282

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 619
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 675
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 340 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 397

Query: 676 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 728
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 448

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 787
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 504

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 505 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 549


>gi|424825132|ref|ZP_18250119.1| 30S ribosomal protein S1 [Chlamydophila abortus LLG]
 gi|333410231|gb|EGK69218.1| 30S ribosomal protein S1 [Chlamydophila abortus LLG]
          Length = 581

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 177/379 (46%), Gaps = 58/379 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 272  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNI-CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                G  ++I   + G +H +E+  +  V DP    ++G  V+  VL I +        +
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKD-----EGK 369

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            +SL     G+  T  +        P  ++E  E     + V+  +KN+T+ G F+ L   
Sbjct: 370  ISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 1391 LDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
            ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +K   S   ++ E 
Sbjct: 415  IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNEIE- 473

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
                    G ++ G + ++ ++G F+ ++N  + GL HVSELSE     IE I   G+ V
Sbjct: 474  ---EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFSKIEDIISIGDSV 529

Query: 1510 KVKILKVDKEKRRISLGMK 1528
              K++K+D + +++SL +K
Sbjct: 530  SAKVIKLDPDHKKVSLSVK 548



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I + + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 184  ILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  + G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+ +   +L V 
Sbjct: 392 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 451

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 42.7 bits (99), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 283

Query: 827  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 316

Query: 887  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 376

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 377  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 1060
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 423  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 475

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 476  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 532

Query: 1121 IIAKSNKPDMKKSFL 1135
            +I     PD KK  L
Sbjct: 533  VIKLD--PDHKKVSL 545



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 191/477 (40%), Gaps = 74/477 (15%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INIDRRNVVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   + G +  ++  G F
Sbjct: 265 LNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRITGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 897 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
                H     +I          + GS+++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNE 471



 Score = 41.2 bits (95), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 560
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 282

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 619
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 675
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 340 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 397

Query: 676 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 728
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 448

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 787
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 504

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 505 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 549


>gi|407278428|ref|ZP_11106898.1| 30S ribosomal protein S1 [Rhodococcus sp. P14]
          Length = 487

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 184/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 922
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEE--GIEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 923 AILDVAKAERLVDLSLK 939
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 47.8 bits (112), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 375

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 376 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|184200835|ref|YP_001855042.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201]
 gi|183581065|dbj|BAG29536.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201]
          Length = 493

 Score = 87.4 bits (215), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 188/406 (46%), Gaps = 57/406 (14%)

Query: 1138 LSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----L 1187
            ++     + V++IG++  F    D +I     G  V G V KVD +  LL I       +
Sbjct: 1    MTTTTQQVAVNDIGTEEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVI 60

Query: 1188 KAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVD 1247
             ++   +     P ++        +G  V   VL   KE K  RL+L   +        D
Sbjct: 61   PSRELSIKHDINPDDV------VAVGDEVEALVLP--KEDKEGRLILSKKRAQYERAWGD 112

Query: 1248 ISNDNMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            I        I E D +V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  IEK------IKEDDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG- 163

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
               Q ++ K++E+ +      +V LS R+ L+   S   ++              ++ L 
Sbjct: 164  ---QQLEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRANF-------------LQQLQ 204

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
               +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+
Sbjct: 205  KGQVRTGTVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVD 263

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNL-SNLH-VGDIVIGQIKRVESYGLFITIENTNLVG 1484
               +RV ++LK      A+Q +   L +  H +G +V G++ ++  +G F+ +E+  + G
Sbjct: 264  MDRERVSLSLK------ATQEDPWQLFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEG 316

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L H+SEL++ HVD  E +    E++ VK++ +D ++RRISL +K +
Sbjct: 317  LVHISELAQRHVDMAEQVVSVNEELFVKVIDIDLDRRRISLSLKQA 362



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 145/348 (41%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    + P     VG E+   VL  + 
Sbjct: 33  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDINPDDVVAVGDEVEALVLPKED 92

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +  G + ++ K G  +    G++GF P S
Sbjct: 93  KEGRLILSKKRAQYERAWGDIEKIKE--DDGVVTGTVIEVVKGGLILDI--GLRGFLPAS 148

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 149 LVEMRRVRDLAP----YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRANFLQQLQ 204

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + +G V  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 205 KGQVRTGTVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 258

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 259 VLDVDMDRERVSLSLKATQEDPWQLF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 314

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   V + +   ++D++ +  RI+LSLKQ+
Sbjct: 315 EGLVHISELAQRHVDMAEQVVSVNEELFVKVIDIDLDRRRISLSLKQA 362



 Score = 41.2 bits (95), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 40/284 (14%)

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQL- 727
           G LV G V  V  + V++ +   GY ++G IP+  L+  ++H      V+  G E + L 
Sbjct: 33  GDLVEGTVVKVDRDEVLLDI---GYKTEGVIPSRELS--IKHDINPDDVVAVGDEVEALV 87

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLT 786
           L  +++   L+LS K +    A     D   I   + VV G V  +++ G  +     L 
Sbjct: 88  LPKEDKEGRLILSKKRAQYERAW---GDIEKIKEDDGVVTGTVIEVVKGGLILDI--GLR 142

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK---QSCCSSTDASFM 843
           GF P S     +  DL+   Y+GQ + + I++++     + LS +   +   S   A+F+
Sbjct: 143 GFLPASLVEMRRVRDLAP--YIGQQLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRANFL 200

Query: 844 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF 903
           Q+    + +   + S  + G+       F+    ++G VH S      +S++        
Sbjct: 201 QQLQKGQVRTGTVSSIVNFGA-------FVDLGGVDGLVHVSE-----LSWK-------- 240

Query: 904 ITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
             H       VE G  +   +LDV      V LSLK    D ++
Sbjct: 241 --HIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQ 282


>gi|452955266|gb|EME60665.1| 30S ribosomal protein S1 [Rhodococcus ruber BKS 20-38]
          Length = 487

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 184/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 922
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEE--GIEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 923 AILDVAKAERLVDLSLK 939
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 47.8 bits (112), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 375

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 376 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|403380791|ref|ZP_10922848.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JC66]
          Length = 420

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 187/397 (47%), Gaps = 43/397 (10%)

Query: 1167 VTGYVYKVDNEWALLTISRHLKAQLFILD-SAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
            V G + KVDNE A + I       + + + SA   SE  E      +G+ +   V+ I+ 
Sbjct: 47   VKGKIVKVDNEQAFVDIGYKYDGIIPLRELSAVSISEASE---AVEVGQELELKVVKIDD 103

Query: 1226 EKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            EK+ L L         S + VD     D++Q  +   + +  +++ ++ G  GLV+ +G 
Sbjct: 104  EKEKLIL---------SKRLVDSEKAWDDLQAKLESQETIEAKVADVVKG--GLVIDVG- 151

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
             L G V  + ++   V D  S Y +G+ ++ KV E+ R         LS +  LD   + 
Sbjct: 152  -LRGFVPASMVERHFVED-FSDY-KGRTLRMKVKELDREKNKVI---LSQKDVLDEEYNA 205

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
               ++   ++  G+ +E            G V+ +T  G F+ +   +D  V +S ++  
Sbjct: 206  KKQEILNSIEI-GQEIE------------GTVQRLTPFGVFVDIG-GIDGLVHISEMAWH 251

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
            +VE   +    G  V  +VL V+P ++R+ +++K +      Q       ++ VG +V G
Sbjct: 252  HVEEASELVKEGDKVKVQVLKVDPENERISLSMKAAQPGPWEQLG----DHIQVGAVVSG 307

Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
             +KR+ ++G F+ I    + GL H+S++S  H+     +   G++V+VKIL ++ +++R+
Sbjct: 308  TVKRLVNFGAFVEI-APGVEGLVHISQISHRHIGTPHEVLEEGQEVQVKILDLNPQEKRV 366

Query: 1524 SLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRS 1560
            SL +K +    +A        +E D   + V   N+S
Sbjct: 367  SLSIKETEEAPEAPAKPEKGRKEKDNTGDYVAQPNQS 403



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 148/348 (42%), Gaps = 25/348 (7%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           VK    VKGK++ VD+  A V        + PL  +S   I +  +  +VG EL  +V+ 
Sbjct: 41  VKKDDTVKGKIVKVDNEQAFVDIGYKYDGIIPLRELSAVSISEASEAVEVGQELELKVVK 100

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           +  ++  +   K LV S+ A     A+   +      +  + K G  +    G++GF P 
Sbjct: 101 IDDEKEKLILSKRLVDSEKAWDDLQAKLESQETIEAKVADVVKGGLVIDV--GLRGFVPA 158

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---------DL 666
           S +      E  S Y  G+ ++ ++       R  N   + +   + E+         + 
Sbjct: 159 SMVERH-FVEDFSDYK-GRTLRMKVKE---LDREKNKVILSQKDVLDEEYNAKKQEILNS 213

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD- 725
           +++G  + G V  +TP  V V +   G   G +    +A H  H      ++K G +   
Sbjct: 214 IEIGQEIEGTVQRLTPFGVFVDI---GGIDGLVHISEMAWH--HVEEASELVKEGDKVKV 268

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           Q+L +D E+  + LS K +     +QL     HI   +VV G V  ++  G FV     +
Sbjct: 269 QVLKVDPENERISLSMKAAQPGPWEQL---GDHIQVGAVVSGTVKRLVNFGAFVEIAPGV 325

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +    GQ V+  ILD+N +  R++LS+K++
Sbjct: 326 EGLVHISQISHRHIGTPHEVLEEGQEVQVKILDLNPQEKRVSLSIKET 373



 Score = 48.5 bits (114), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 139/365 (38%), Gaps = 58/365 (15%)

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G I K++    FV       G  P  EL      E S    VGQ ++ +++       ++
Sbjct: 49  GKIVKVDNEQAFVDIGYKYDGIIPLRELSAVSISEASEAVEVGQELELKVVKIDDEKEKL 108

Query: 651 NLSFMMKPTRVSEDDL-VKLGS---LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD 706
            LS  +  +  + DDL  KL S   + + V DVV    +V+ V  +G+   ++   H  +
Sbjct: 109 ILSKRLVDSEKAWDDLQAKLESQETIEAKVADVVK-GGLVIDVGLRGFVPASMVERHFVE 167

Query: 707 HLE--HATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSL---INSAQQLPSDASHIHP 761
                    ++  +K          LD E + ++LS K  L    N+ +Q     + I  
Sbjct: 168 DFSDYKGRTLRMKVKE---------LDREKNKVILSQKDVLDEEYNAKKQ--EILNSIEI 216

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              + G V  +   G FV  +G + G    S+       + S+    G  V+  +L V+ 
Sbjct: 217 GQEIEGTVQRLTPFGVFVD-IGGIDGLVHISEMAWHHVEEASELVKEGDKVKVQVLKVDP 275

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
           E  RI+LS+K +     +                 Q   H            +G+V+ G 
Sbjct: 276 ENERISLSMKAAQPGPWE-----------------QLGDH----------IQVGAVVSGT 308

Query: 882 VHESNDFGVVVSFEEHSDVYGF-----ITHHQLAGA--TVESGSVIQAAILDVAKAERLV 934
           V    +FG  V       V G      I+H  +      +E G  +Q  ILD+   E+ V
Sbjct: 309 VKRLVNFGAFVEI--APGVEGLVHISQISHRHIGTPHEVLEEGQEVQVKILDLNPQEKRV 366

Query: 935 DLSLK 939
            LS+K
Sbjct: 367 SLSIK 371


>gi|334563708|ref|ZP_08516699.1| 30S ribosomal protein S1 [Corynebacterium bovis DSM 20582]
          Length = 488

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 183/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS   F    D +I     G  V G V KVD++  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEDFLAAVDSTIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+ E      +G  +   VL+  KE K  RL+L   +        + +   ++
Sbjct: 69   KHDVDPDEVVE------VGDEIDALVLT--KEDKEGRLILSKKR-----AQYERAWGAIE 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++ 
Sbjct: 116  ELKEKDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIG----QEIEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 170  KIIELDKHRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGV 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E
Sbjct: 273  SLKAT-----QEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAE 326

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HVD  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 327  RHVDVPDQVVTVGQDAMVKVIDIDLERRRISLSLKQA 363



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+  +       +   VGQ     ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAERHVDVPDQVVTVGQDAMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|329942819|ref|ZP_08291598.1| ribosomal protein S1 [Chlamydophila psittaci Cal10]
 gi|449071120|ref|YP_007438200.1| 30S ribosomal protein S1 [Chlamydophila psittaci Mat116]
 gi|328815079|gb|EGF85068.1| ribosomal protein S1 [Chlamydophila psittaci Cal10]
 gi|449039628|gb|AGE75052.1| 30S ribosomal protein S1 [Chlamydophila psittaci Mat116]
          Length = 584

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 177/379 (46%), Gaps = 58/379 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 272  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNI-CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                G  ++I   + G +H +E+  +  V DP    ++G  V+  VL I +        +
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKD-----EGK 369

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            +SL     G+  T  +        P  ++E  E     + V+  +KN+T+ G F+ L   
Sbjct: 370  ISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 1391 LDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
            ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +K   S   ++ E 
Sbjct: 415  IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNEIE- 473

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
                    G ++ G + ++ ++G F+ ++N  + GL HVSELSE     IE I   G+ V
Sbjct: 474  ---EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFSKIEDIISIGDSV 529

Query: 1510 KVKILKVDKEKRRISLGMK 1528
              K++K+D + +++SL +K
Sbjct: 530  SAKVIKLDPDHKKVSLSVK 548



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I + + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 184  ILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  + G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 54.3 bits (129), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+ +   +L V 
Sbjct: 392 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 451

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 42.7 bits (99), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 283

Query: 827  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 316

Query: 887  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 376

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 377  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 1060
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 423  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 475

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 476  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 532

Query: 1121 IIAKSNKPDMKKSFL 1135
            +I     PD KK  L
Sbjct: 533  VIKLD--PDHKKVSL 545



 Score = 42.4 bits (98), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 191/477 (40%), Gaps = 74/477 (15%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INIDRRNVVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   + G +  ++  G F
Sbjct: 265 LNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRITGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 897 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
                H     +I          + GS+++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNE 471



 Score = 41.2 bits (95), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 560
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 282

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 619
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 675
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 340 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 397

Query: 676 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 728
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 448

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 787
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 504

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 505 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 549


>gi|228990609|ref|ZP_04150574.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
 gi|228769135|gb|EEM17733.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
          Length = 382

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 177/381 (46%), Gaps = 51/381 (13%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            + +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA     
Sbjct: 15   LQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKASDVVK 63

Query: 1221 LSINKEKKLLRLVLRPFQDG---ISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVG 1275
            L  N E K+++L     +D    +S + VD       +Q     G++    +  I++G  
Sbjct: 64   LDQNLELKVIKL-----EDDDLVLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNG-- 116

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            GLVV +G   +      E+  +   +  + Y +G+ +  K++E+ R       V LS ++
Sbjct: 117  GLVVDLGVRGFIPASLVEMHYV---EDFTDY-KGKTLAVKIVELDRE---KNRVILSHKA 169

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
             ++              +   K  E I  L    +V+G V+ +T  G F+ +   +D  V
Sbjct: 170  VVEQ-------------ELESKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGN-VDGLV 215

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS-N 1454
             +S +S   VE P      G+ V  +VLSV+  ++R+ +++K      A      N+S  
Sbjct: 216  HISQISHDRVEQPSDVLTQGQSVKVKVLSVDADTQRISLSIKA-----AQPGPWENVSAE 270

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
            +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK+L
Sbjct: 271  VKAGDIREGIVKRIVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVL 329

Query: 1515 KVDKEKRRISLGMKSSYFKND 1535
            +V   ++RISL +K +  +N+
Sbjct: 330  EVHAAEKRISLSIKEAVEENN 350



 Score = 55.1 bits (131), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   G V  L  +  +S   + +P      G  +  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GNVDGLVHISQISHDRVEQPSDVLTQGQSVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          +S+  +A D  I  G + +I   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVSAEVKAGD--IREGIVKRIVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++       P+ +  +GQ VK +++    A +RI+LS 
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSI 342



 Score = 43.9 bits (102), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 157/383 (40%), Gaps = 36/383 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV G V  V+    +V        + P+  ++   I K     K+   L  +V+ ++ 
Sbjct: 18  GDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVKLDQNLELKVIKLED 77

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
             + ++  K  V ++ A +    + T   +    +  I   G  V    GV+GF P S +
Sbjct: 78  DDLVLS--KRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDL--GVRGFIPASLV 133

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----------VK 668
            +    E  + Y  G+ +  +I+       R+ LS       V E +L          +K
Sbjct: 134 EMHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSH----KAVVEQELESKKKEAISSLK 187

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +V G V  +T     V V   G   G +    ++ D +E  +    V+  G     +
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNV---GNVDGLVHISQISHDRVEQPS---DVLTQGQSVKVK 241

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           +L +D ++  + LS     I +AQ  P +  ++ +    +  G V  I+  G FV  L  
Sbjct: 242 VLSVDADTQRISLS-----IKAAQPGPWENVSAEVKAGDIREGIVKRIVTFGAFVEILPG 296

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++   + +     
Sbjct: 297 VEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAVEENNETEDYS 356

Query: 845 EHFLLEEKIAMLQSSKHNGSELK 867
           ++    E  A  Q S   G +LK
Sbjct: 357 QYEPTSES-ATFQFSDIIGEQLK 378


>gi|84999536|ref|XP_954489.1| rna-associated protein [Theileria annulata]
 gi|65305487|emb|CAI73812.1| rna-associated protein, putative [Theileria annulata]
          Length = 690

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 127/516 (24%), Positives = 203/516 (39%), Gaps = 67/516 (12%)

Query: 85  LHKKNKKKKKKTERKANETVDD--LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVA 142
           L +  K K  K  +   E + D   GS   D +  KLP      TL +I+ G  + G VA
Sbjct: 27  LSRFQKNKANKPSKIDEEDISDGIYGSKCTDDV--KLP------TLDSITPGTLVLGSVA 78

Query: 143 EVNEKDLVICLPGGLRGLARAADALDP----ILDNEIEANEDNLLPTIFHVGQLVSCIVL 198
            V    L I +   + G A+ +D  D       + ++  + DN L +   +G  V C VL
Sbjct: 79  LVCPSGLRIHILNNIVGFAKYSDLFDSADSDTNNGDLANDRDNRLSSPIKIGSTVICYVL 138

Query: 199 QLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFG-LPSF 257
           +       +    + LSL+ SL+ + L ++ +  G++L A V S EDHG  + F  +   
Sbjct: 139 K-------VNYSYLSLSLKPSLINRDLRVDNIYPGLILPATVTSQEDHGLSITFNSVSGL 191

Query: 258 TGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVV------YLSSDPDTVSKCVTKDL 311
            GF+  +     S   VK  L     + S      V       ++      + K      
Sbjct: 192 NGFIMYDEQGRES---VKSILKSSYPINSTVNVAVVTVNAERGFVKCQWPWLYKTPIDTE 248

Query: 312 KGISIDLLVPGMMVSTRVQSI----LEN-------GVMLSFLTYFTGTVDIFHLQNTFPT 360
            G+  D L PG+++   V ++    LE        G  +  L     T+   H   +F  
Sbjct: 249 AGLVFDTLKPGLLLKAEVLNVHNIVLEGSSKSVFAGYTVKCLGSINETISSLH---SFAQ 305

Query: 361 TNWKNDYNQH-------KKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHV--KVGDIY 411
           TN  N+           + V  RI+ VD  ++ + +++   +L  + P       + +  
Sbjct: 306 TNISNEVEMEDFYSLVGETVECRIIQVDFENKKLHMSMQSQILKWKGPMGQAFKPINNKI 365

Query: 412 DQSKVVRVDRGLGLLLDIPSTPVSTP--------AYVTISDVAE-----EEVRKLEKKYK 458
              K+ +      LL  IP T              Y  I DV +     EE      KY 
Sbjct: 366 INCKITQCFSSGFLLESIPPTGDDINNSDKRVLHCYCAIHDVLDDKSLTEETIFSSSKYS 425

Query: 459 EGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF 518
            GS    R++ F +   L    +K+S       T  ++    VVKGK+I + + GAIVQ 
Sbjct: 426 VGSVHECRVIEFDYFTRLTRVSMKSSLISEEYVTPFELSASDVVKGKIINLVNSGAIVQI 485

Query: 519 PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
              V    PL H+++  + K  +  KVG  L  RVL
Sbjct: 486 SSLVFGKVPLGHLTQVPVTKLPEGLKVGRNLRLRVL 521


>gi|403713637|ref|ZP_10939721.1| 30S ribosomal protein S1 [Kineosphaera limosa NBRC 100340]
 gi|403212049|dbj|GAB94404.1| 30S ribosomal protein S1 [Kineosphaera limosa NBRC 100340]
          Length = 489

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 173/378 (45%), Gaps = 50/378 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG----H 1219
            G  V G + KVD +  LL I    +  +        PS     +     G+ VT      
Sbjct: 35   GDIVEGVIVKVDRDEVLLDIGYKTEGVI--------PSRELSIKHDVDPGEVVTVGDEVE 86

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
             L + KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 87   ALVLQKEDKEGRLILSKKR-----AQYERAWGTIEKVKEEDGVVTGTVIEVVKG--GLIL 139

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 140  DIGLRGFLPASLVEMRRVRDLQPYVGKE----IEAKIIELDKNRN---NVVLSRRAWLEQ 192

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   +               + +L    +  G V ++ + G F+ L   +D  V +S 
Sbjct: 193  TQSEVRTTF-------------LRELQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSE 238

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G+ V   VL V+   +RV ++LK +      +    + +  H +G
Sbjct: 239  LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKAT-----QEDPWQHFARTHAIG 293

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             +V G++ ++  +G F+ +++  + GL H+SEL+E HV+  E +   G ++ VK++ +D 
Sbjct: 294  QVVPGKVTKLVPFGAFVRVDD-GIEGLVHISELAERHVELPEQVVTVGGEIFVKVIDIDL 352

Query: 1519 EKRRISLGMKSSYFKNDA 1536
            E+RRISL +K +   NDA
Sbjct: 353  ERRRISLSLKQA---NDA 367



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 156/362 (43%), Gaps = 35/362 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 35  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVTVGDEVEALVLQKED 94

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 95  KEGRLILSKKRAQYERAWGTIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 150

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 151 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLRELQ 206

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 207 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 260

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 261 VLDVDMDRERVSLSLKATQEDPWQHF----ARTHAIGQVVPGKVTKLVPFGAFVRVDDGI 316

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG  +   ++D++ E  RI+LSLKQ    + DA+    
Sbjct: 317 EGLVHISELAERHVELPEQVVTVGGEIFVKVIDIDLERRRISLSLKQ----ANDAALGNA 372

Query: 846 HF 847
            F
Sbjct: 373 EF 374



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 133/298 (44%), Gaps = 43/298 (14%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 109  ERAWGTIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 167

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHE---GDIVGGRISKILS 1272
            +   ++ ++K +  + L  R + +          ++   TF+ E   G +  G +S I++
Sbjct: 168  IEAKIIELDKNRNNVVLSRRAWLE-------QTQSEVRTTFLRELQKGQVRSGVVSSIVN 220

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
               G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LS
Sbjct: 221  F--GAFVDLGG-VDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLS 274

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
            L+++ +                P +H  +   +    +V G V  +   G F+ +   ++
Sbjct: 275  LKATQE---------------DPWQHFARTHAI--GQVVPGKVTKLVPFGAFVRVDDGIE 317

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
              V +S L++ +VE PE+   +G  +  +V+ ++   +R+ ++LK ++      +E +
Sbjct: 318  GLVHISELAERHVELPEQVVTVGGEIFVKVIDIDLERRRISLSLKQANDAALGNAEFD 375


>gi|384450566|ref|YP_005663166.1| 30S ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|392376648|ref|YP_004064426.1| 30s ribosomal protein S1 [Chlamydophila psittaci RD1]
 gi|410858433|ref|YP_006974373.1| 30s ribosomal protein S1 [Chlamydia psittaci 01DC12]
 gi|313847991|emb|CBY16988.1| 30s ribosomal protein S1 [Chlamydophila psittaci RD1]
 gi|328914660|gb|AEB55493.1| ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|410811328|emb|CCO01974.1| 30s ribosomal protein S1 [Chlamydia psittaci 01DC12]
          Length = 581

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 177/379 (46%), Gaps = 58/379 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 272  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNI-CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                G  ++I   + G +H +E+  +  V DP    ++G  V+  VL I +        +
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKD-----EGK 369

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            +SL     G+  T  +        P  ++E  E     + V+  +KN+T+ G F+ L   
Sbjct: 370  ISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 1391 LDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
            ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +K   S   ++ E 
Sbjct: 415  IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNEIE- 473

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
                    G ++ G + ++ ++G F+ ++N  + GL HVSELSE     IE I   G+ V
Sbjct: 474  ---EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFSKIEDIISIGDSV 529

Query: 1510 KVKILKVDKEKRRISLGMK 1528
              K++K+D + +++SL +K
Sbjct: 530  SAKVIKLDPDHKKVSLSVK 548



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I + + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 184  ILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  + G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 53.9 bits (128), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+ +   +L V 
Sbjct: 392 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 451

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 225  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 283

Query: 827  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 284  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 316

Query: 887  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 317  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 376

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 377  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 422

Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 1060
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 423  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 475

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 476  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 532

Query: 1121 IIAKSNKPDMKKSFL 1135
            +I     PD KK  L
Sbjct: 533  VIKLD--PDHKKVSL 545



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 191/477 (40%), Gaps = 74/477 (15%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
            F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INIDRRNVVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    G+V  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   + G +  ++  G F
Sbjct: 265 LNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRITGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVRAEIKNLTNYGAFVELEPG 414

Query: 897 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
                H     +I          + GS+++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNE 471



 Score = 40.8 bits (94), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 560
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 282

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 619
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 675
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 340 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 397

Query: 676 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 728
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 448

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 787
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 504

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 505 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 549


>gi|404475817|ref|YP_006707248.1| 30S ribosomal protein S1 [Brachyspira pilosicoli B2904]
 gi|404437306|gb|AFR70500.1| 30S ribosomal protein S1 [Brachyspira pilosicoli B2904]
          Length = 556

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 151/345 (43%), Gaps = 15/345 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S++K G +V+GKV  ++ FGA +Q   G+     +P+MS  +I+ P      G E  F+V
Sbjct: 189 SNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQV 248

Query: 554 LGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           L V K KR      K L               D  I  G +T ++K G FV  Y GV+G 
Sbjct: 249 LSVDKEKRKVDLGIKQLEGDTWYKFVEEYHVGD--IIKGEVTTVKKFGAFVNVYEGVEGL 306

Query: 613 APRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVK 668
              S+L  +     P+    VG  ++C+I+      R++ L        P   +E D   
Sbjct: 307 IHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLKQVKDNPWDSAERDFPV 366

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
             S+   V  +    A  V+ +  G  +G        D + +   +K  IK   E + ++
Sbjct: 367 KSSVKCKVKRIFKDFA--VFELPNGL-EGICDISDF-DWMNNTVNIKDYIKENEEVEMVI 422

Query: 729 V-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           + +D +   + LS K++  +  +    D ++ H  S+V+G V  II++G  V     L G
Sbjct: 423 MSIDRDKQRIKLSYKHTKESPWRVF--DKAYPH-GSIVNGTVKAIIDSGVIVSLENDLEG 479

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           +   S+    +   L     VG+S    + +VN    RI+LS ++
Sbjct: 480 YMHISQIDLPKGETLESVLKVGESYPFVVREVNQVKRRISLSRRE 524



 Score = 79.7 bits (195), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 95/170 (55%), Gaps = 6/170 (3%)

Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
            E + +L    IV+G VKN+   G FI L+  LD  + + N+S   + +P+     G+   
Sbjct: 186  EYLSNLKEGDIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERK 245

Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
             +VLSV+   ++V++ +K  +  T  +     +   HVGDI+ G++  V+ +G F+ +  
Sbjct: 246  FQVLSVDKEKRKVDLGIKQLEGDTWYKF----VEEYHVGDIIKGEVTTVKKFGAFVNV-Y 300

Query: 1480 TNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
              + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  EGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTLGLK 350



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 109/541 (20%), Positives = 203/541 (37%), Gaps = 80/541 (14%)

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            +  G I + +    F+ F   V+G   R+E   +P             VK   + ++   
Sbjct: 31   VVSGKIVQFDDTDVFIDFNYKVEGKINRNEFDKEP-------------VKGEEIEAVIKG 77

Query: 648  RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTP-NAVVVYVIAKGYSKGTIPTEHLA- 705
            +  N  +++   R  E D  K   L+   V   TP N VV   I  G++   +       
Sbjct: 78   QDNNKGYVILSKR--EIDKRKAQDLIEDAVKNATPINGVVKEAIKGGFTVSIMGHSAFCP 135

Query: 706  -DHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 762
               ++ +  +K     G EF Q  ++D + +  ++ ++  L    Q   +    S++   
Sbjct: 136  FSQIDISRGIKETDYIGKEF-QFKIIDRKGNKDIVVSRRVLQEETQNKVIEEYLSNLKEG 194

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             +V G V NI + G F++    L GF         +  +       G+  +  +L V+ E
Sbjct: 195  DIVEGKVKNIEKFGAFIQLTEGLDGFLAIPNMSWAKIINPKNIITKGEERKFQVLSVDKE 254

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
              ++ L +KQ                LE             +  K+VE + +G +I+G+V
Sbjct: 255  KRKVDLGIKQ----------------LE-----------GDTWYKFVEEYHVGDIIKGEV 287

Query: 883  HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
                 FG  V+  E      H     + +H       V+ G+ ++  ILD+   ER + L
Sbjct: 288  TTVKKFGAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPERKLTL 347

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
             LK V               K      A +D  V  +V   V+ + +++ V  LP     
Sbjct: 348  GLKQV---------------KDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNGLEG 392

Query: 997  IGYASVSDYNTQKFPQKQFL-NGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 1055
            I   S  D+       K ++   + V   +M++       R+ L  K   E+      +A
Sbjct: 393  ICDISDFDWMNNTVNIKDYIKENEEVEMVIMSIDRDKQ--RIKLSYKHTKESPWRVFDKA 450

Query: 1056 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
                 Y  GS+V   +  I    + +       G +HI++++  K   +E++    K+G+
Sbjct: 451  -----YPHGSIVNGTVKAIIDSGVIVSLENDLEGYMHISQIDLPKGETLESV---LKVGE 502

Query: 1116 T 1116
            +
Sbjct: 503  S 503



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 139/311 (44%), Gaps = 41/311 (13%)

Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFI---HEGDIVGGRISKILSGVG 1275
             VLS++KEK+ + L ++  +            D    F+   H GDI+ G ++ +     
Sbjct: 247  QVLSVDKEKRKVDLGIKQLE-----------GDTWYKFVEEYHVGDIIKGEVTTVKKF-- 293

Query: 1276 GLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            G  V +   + G +H ++L  N  V++P      G +++CK+L+++   R    + L L+
Sbjct: 294  GAFVNVYEGVEGLIHVSDLSWNSHVNNPNDFVKVGAYLECKILDMNVPER---KLTLGLK 350

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
               D    +   D         K     +D +   +  G ++ +     F  ++  +   
Sbjct: 351  QVKDNPWDSAERDFPVKSSVKCKVKRIFKDFAVFELPNG-LEGICDISDFDWMNNTV--- 406

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
                N+ D   E+ E E  I        +S++   +R++++ K +     S   + + + 
Sbjct: 407  ----NIKDYIKENEEVEMVI--------MSIDRDKQRIKLSYKHT---KESPWRVFDKAY 451

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
             H G IV G +K +   G+ +++EN +L G  H+S++     + +E++ + GE     + 
Sbjct: 452  PH-GSIVNGTVKAIIDSGVIVSLEN-DLEGYMHISQIDLPKGETLESVLKVGESYPFVVR 509

Query: 1515 KVDKEKRRISL 1525
            +V++ KRRISL
Sbjct: 510  EVNQVKRRISL 520


>gi|332287411|ref|YP_004422312.1| 30S ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|384451565|ref|YP_005664163.1| 30S ribosomal protein S1 [Chlamydophila psittaci 01DC11]
 gi|384452538|ref|YP_005665135.1| 30S ribosomal protein S1 [Chlamydophila psittaci 08DC60]
 gi|384453514|ref|YP_005666110.1| 30S ribosomal protein S1 [Chlamydophila psittaci C19/98]
 gi|384454493|ref|YP_005667088.1| 30S ribosomal protein S1 [Chlamydophila psittaci 02DC15]
 gi|406592329|ref|YP_006739509.1| 30S ribosomal protein S1 [Chlamydia psittaci CP3]
 gi|406593415|ref|YP_006740594.1| 30S ribosomal protein S1 [Chlamydia psittaci NJ1]
 gi|406594916|ref|YP_006741629.1| 30S ribosomal protein S1 [Chlamydia psittaci MN]
 gi|407455308|ref|YP_006734199.1| 30S ribosomal protein S1 [Chlamydia psittaci GR9]
 gi|407456694|ref|YP_006735267.1| 30S ribosomal protein S1 [Chlamydia psittaci VS225]
 gi|407458042|ref|YP_006736347.1| 30S ribosomal protein S1 [Chlamydia psittaci WS/RT/E30]
 gi|407459284|ref|YP_006737387.1| 30S ribosomal protein S1 [Chlamydia psittaci M56]
 gi|325506682|gb|ADZ18320.1| 30S ribosomal protein S1 [Chlamydophila psittaci 6BC]
 gi|334692295|gb|AEG85514.1| 30S ribosomal protein S1 [Chlamydophila psittaci C19/98]
 gi|334693275|gb|AEG86493.1| 30S ribosomal protein S1 [Chlamydophila psittaci 01DC11]
 gi|334694250|gb|AEG87467.1| 30S ribosomal protein S1 [Chlamydophila psittaci 02DC15]
 gi|334695227|gb|AEG88443.1| 30S ribosomal protein S1 [Chlamydophila psittaci 08DC60]
 gi|405781851|gb|AFS20600.1| ribosomal protein S1 [Chlamydia psittaci GR9]
 gi|405783348|gb|AFS22096.1| ribosomal protein S1 [Chlamydia psittaci MN]
 gi|405783955|gb|AFS22702.1| ribosomal protein S1 [Chlamydia psittaci VS225]
 gi|405785172|gb|AFS23918.1| ribosomal protein S1 [Chlamydia psittaci WS/RT/E30]
 gi|405786252|gb|AFS24997.1| ribosomal protein S1 [Chlamydia psittaci M56]
 gi|405788201|gb|AFS26944.1| ribosomal protein S1 [Chlamydia psittaci CP3]
 gi|405789287|gb|AFS28029.1| ribosomal protein S1 [Chlamydia psittaci NJ1]
          Length = 501

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 177/379 (46%), Gaps = 58/379 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 137  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 191

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 192  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 236

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNI-CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                G  ++I   + G +H +E+  +  V DP    ++G  V+  VL I +        +
Sbjct: 237  PY--GAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKD-----EGK 289

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            +SL     G+  T  +        P  ++E  E     + V+  +KN+T+ G F+ L   
Sbjct: 290  ISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKNLTNYGAFVELEPG 334

Query: 1391 LDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
            ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +K   S   ++ E 
Sbjct: 335  IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNEIE- 393

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
                    G ++ G + ++ ++G F+ ++N  + GL HVSELSE     IE I   G+ V
Sbjct: 394  ---EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFSKIEDIISIGDSV 449

Query: 1510 KVKILKVDKEKRRISLGMK 1528
              K++K+D + +++SL +K
Sbjct: 450  SAKVIKLDPDHKKVSLSVK 468



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I + + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 53   EGSIVKGQIIRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 103

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 104  ILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 147

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 148  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALG 206

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  + G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 207  LKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 261

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 262  NVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 306



 Score = 54.3 bits (129), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+ +   +L V 
Sbjct: 312 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 371

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 372 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 428

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 429 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 466



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 145  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 203

Query: 827  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 204  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 236

Query: 887  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 237  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 296

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 297  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 342

Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 1060
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 343  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 395

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 396  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 452

Query: 1121 IIAKSNKPDMKKSFL 1135
            +I     PD KK  L
Sbjct: 453  VIKLD--PDHKKVSL 465



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 560
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 144 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 202

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 619
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 203 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 259

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 675
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 260 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 317

Query: 676 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 728
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 318 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 368

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 787
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 369 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 424

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 425 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 469



 Score = 40.4 bits (93), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 188/475 (39%), Gaps = 82/475 (17%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK-----VGAELVFRV 553
           G +VKG++I     G IV    G++A  P   +         KK K     VG    F++
Sbjct: 54  GSIVKGQIIRKVKGGLIVDI--GMEAFLPGSQID-------NKKIKNLDDYVGKVCEFKI 104

Query: 554 LGVK-SKRITVTHKKTLVKSKLAILSSYAEATDRLIT----HGWITKIEKHGCFVRFYNG 608
           L +   +R  V  ++ L++++   +S  AE  +++       G +  I   G F+   +G
Sbjct: 105 LKINIDRRNVVVSRRELLEAER--ISKKAELIEQITIGERRKGIVKNITDFGVFLDL-DG 161

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
           + G    +++       PS M  + Q ++  I+S      R+ L    K     ED   K
Sbjct: 162 IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALGLKQKEHNPWEDIEKK 221

Query: 669 L--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
              G  ++G +  + P    +  I +G  +G I       H+   + +K+V+ P     +
Sbjct: 222 YPPGKRITGKIVKLLPYGAFIE-IEEGI-EGLI-------HVSEMSWVKNVVDP----SE 268

Query: 727 LLVLDNESSNLLLS-----AKYSL-INSAQQLPSD-ASHIHPNSV-VHGYVCNIIETGCF 778
           ++   +E   ++LS      K SL +   +  P D     +P  + V   + N+   G F
Sbjct: 269 VVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLHVRAEIKNLTNYGAF 328

Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           V     + G    S     ++ +  S+ +  G  V + IL V+ E+ +ITL +KQ     
Sbjct: 329 VELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQ----- 383

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
                             L S+  N  E    E F  GSVI G V +   FG  V  +  
Sbjct: 384 ------------------LSSNPWNEIE----EMFPTGSVISGVVTKITAFGAFVELQ-- 419

Query: 898 SDVYGFITHHQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945
           + + G I   +L+          +  G  + A ++ +    + V LS+K    D+
Sbjct: 420 NGIEGLIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKEYLADK 474


>gi|319892466|ref|YP_004149341.1| 30S ribosomal protein S1p [Staphylococcus pseudintermedius HKU10-03]
 gi|317162162|gb|ADV05705.1| SSU ribosomal protein S1p [Staphylococcus pseudintermedius HKU10-03]
          Length = 394

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 99/174 (56%), Gaps = 6/174 (3%)

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            K  E ++ +    +++G V  +T+ G FI L   +D  V +S LS  +V+SPE+   IG 
Sbjct: 184  KKAELLQSIKAGDVIEGKVARLTNFGAFIDLG-GVDGLVHVSELSHEHVKSPEEVVSIGD 242

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
             V  +V SVE  S+RV +++K  D+  +    I        GDIV G++ R+ S+G F+ 
Sbjct: 243  TVKVKVRSVEQDSERVSLSIK--DTLPSPFETIQ--EKYSEGDIVEGKVMRLASFGAFVE 298

Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            I  + L GL H+SE+S  H+     +   G+ V+VKIL ++ E+ RISL +K++
Sbjct: 299  I-GSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 73.9 bits (180), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLD------IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           ++KV  V +G GL++D      IP++ +ST     I D ++ E R LE K +E    + R
Sbjct: 113 EAKVTEVVKG-GLVVDVGQRGFIPASLISTD---YIEDFSDYEGRVLELKVEELEPEKNR 168

Query: 467 -ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E       KA   +        +K G V++GKV  + +FGA +   GGV  L
Sbjct: 169 VILSRKAVEAEENEKKKAELLQS-------IKAGDVIEGKVARLTNFGAFIDL-GGVDGL 220

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   +G  +  +V  V+  S+R++++ K TL      I   Y+E 
Sbjct: 221 VHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSEG 280

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               I  G + ++   G FV   +G+QG    SE+       P  +   GQ V+ +I+  
Sbjct: 281 D---IVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGI 337

Query: 644 IPASRRINLSF 654
            P   RI+LS 
Sbjct: 338 NPEEERISLSI 348



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 10/170 (5%)

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1420
            E L  N  ++  V  V   G  + + ++    +  S +S  Y+E    +F    G+++  
Sbjct: 104  EKLENNETIEAKVTEVVKGGLVVDVGQR--GFIPASLISTDYIE----DFSDYEGRVLEL 157

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
            +V  +EP   RV ++ K  ++    + +   L ++  GD++ G++ R+ ++G FI +   
Sbjct: 158  KVEELEPEKNRVILSRKAVEAEENEKKKAELLQSIKAGDVIEGKVARLTNFGAFIDLGGV 217

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  GL HVSELS +HV + E +   G+ VKVK+  V+++  R+SL +K +
Sbjct: 218  D--GLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDT 265



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 145/354 (40%), Gaps = 28/354 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  + G+V  ++    +V   GG    + P+  +S + +    +  KVG E+   
Sbjct: 12  NDIKEGDKITGEVQQIEDKHVVVHINGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAY 71

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K KL    SYA   ++L         +T++ K G  V    G
Sbjct: 72  VTKIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDV--G 129

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD--- 665
            +GF P S +  D   E  S Y  G+V++ ++    P   R+ LS   K     E++   
Sbjct: 130 QRGFIPASLISTDY-IEDFSDYE-GRVLELKVEELEPEKNRVILS--RKAVEAEENEKKK 185

Query: 666 -----LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                 +K G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 186 AELLQSIKAGDVIEGKVARLTNFGAFIDL---GGVDGLVHVSELSH--EHVKSPEEVVSI 240

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  ++ +S  + LS K +L +  + +    S      +V G V  +   G FV
Sbjct: 241 GDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSE---GDIVEGKVMRLASFGAFV 297

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
                L G    S+          +    GQ+V+  IL +N E  RI+LS+K +
Sbjct: 298 EIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 160/379 (42%), Gaps = 85/379 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 284
           ++EG  +T  V+ IED   ++H     + G +P + L+    EN+   VK G  +   V 
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHINGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAYVT 73

Query: 285 -----------------RSIDRTRKVVYLSS---DPDTVSKCVTKDLKG-ISIDL----L 319
                            R ++  +   YL     + +T+   VT+ +KG + +D+     
Sbjct: 74  KIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDVGQRGF 133

Query: 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
           +P  ++ST           +   + + G V    ++   P  N             R++ 
Sbjct: 134 IPASLISTD---------YIEDFSDYEGRVLELKVEELEPEKN-------------RVIL 171

Query: 380 VDPTSRAVGLTLN----PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
              + +AV    N      LL +      +K GD+  + KV R+    G  +D+      
Sbjct: 172 ---SRKAVEAEENEKKKAELLQS------IKAGDVI-EGKVARL-TNFGAFIDLGGVD-- 218

Query: 436 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE------GLATGILKASAFEGL 489
               V +S+++ E V+  E+    G  V+V++   R +E       L+      S FE +
Sbjct: 219 --GLVHVSELSHEHVKSPEEVVSIGDTVKVKV---RSVEQDSERVSLSIKDTLPSPFETI 273

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
              +S+   G +V+GKV+ + SFGA V+   G++ L  +  +S   I  PG+  + G  +
Sbjct: 274 QEKYSE---GDIVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTV 330

Query: 550 VFRVLGV--KSKRITVTHK 566
             ++LG+  + +RI+++ K
Sbjct: 331 QVKILGINPEEERISLSIK 349



 Score = 40.8 bits (94), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 112/294 (38%), Gaps = 49/294 (16%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 725
           +K G  ++G V  +    VVV++    Y+ G IP   L+  H+E+A     V+K G E  
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHINGGKYN-GIIPISQLSTYHVENAN---EVVKVGDEIG 69

Query: 726 QLLVL-----DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             +       +NE+ + +LS +   +   Q        +  N  +   V  +++ G  V 
Sbjct: 70  AYVTKIEVDEENETGSYILSKRK--LEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVD 127

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
              R  GF P S        D S   Y G+ +   + ++  E  R+ LS K       + 
Sbjct: 128 VGQR--GFIPASLISTDYIEDFSD--YEGRVLELKVEELEPEKNRVILSRKAVEAEENE- 182

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
                    ++K  +LQS K              G VIEGKV    +FG  +       V
Sbjct: 183 ---------KKKAELLQSIK-------------AGDVIEGKVARLTNFGAFIDL---GGV 217

Query: 901 YGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
            G +   +L+   V+S       G  ++  +  V +    V LS+K      F 
Sbjct: 218 DGLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFE 271


>gi|449134245|ref|ZP_21769746.1| 30S ribosomal protein S1 [Rhodopirellula europaea 6C]
 gi|448886875|gb|EMB17263.1| 30S ribosomal protein S1 [Rhodopirellula europaea 6C]
          Length = 598

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 182/382 (47%), Gaps = 61/382 (15%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKA 1215
            ++ +GQ   G V  + +  A + +   +   L I D A+E    P+E+        I + 
Sbjct: 217  ELEVGQIRKGIVKNIADFGAFVDLG-GIDGLLHITDMAWERIGHPTEM------LSIDQE 269

Query: 1216 VTGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +   VL I++EK+ + L L+     P+++        I        +H G++V      +
Sbjct: 270  IEVKVLHIDREKQKIALGLKQKDRNPWEN--------IETKYPVESVHPGEVV-----NV 316

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
            +S   G  V++ P + G VH +E+     V+ P    + G  +   +L +    +     
Sbjct: 317  MSY--GAFVKLEPGIEGLVHISEMSWTKRVNHPSELVNIGDKIDVMILGVDPEGQ----- 369

Query: 1330 ELSLRSSLDGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
            +LSL     GM  T  N  D            E +E       V+G V+N+T+ G FI L
Sbjct: 370  QLSL-----GMKQTLKNPWD------------EVLERYPEGKDVKGKVRNLTNYGAFIEL 412

Query: 1388 SRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1446
               +D  + +S++S    +  P +    G+ +  R+LSV+   +R+ + LK  D+     
Sbjct: 413  EEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDN-DPWD 471

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
             +I +      G +V G++ ++ ++G+FI +E+  L GL H+SEL+E  V++ E + + G
Sbjct: 472  GDIPD--KYQPGQLVKGEVTKITNFGVFIGLED-GLEGLLHISELAEHKVEDPEEVVKVG 528

Query: 1507 EKVKVKILKVDKEKRRISLGMK 1528
            + ++VK+L+VD ++R+I L +K
Sbjct: 529  DPIEVKVLRVDTDERKIGLSLK 550



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 182/389 (46%), Gaps = 47/389 (12%)

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1216
            E+ D + G+ V G + ++++EWAL+ +    K++  +    + P E Q       IG  V
Sbjct: 39   EQQDYNSGKIVDGRIVELNDEWALVDVG--FKSEGTVGLDEWGPEEDQP-----KIGDTV 91

Query: 1217 TGHVLSINKEKKLLRLVLRPF-QDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSG 1273
               +  +  E   L     P+    +S +  +  I  + M   + EG +V G + + + G
Sbjct: 92   KVLIEEMEDE---LGAADDPYGMISLSKRKAEKIIEWEAMMETVAEGQVVTGTVIRKIKG 148

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD-EGQFVKCKVLEISRTVRGTFHVELS 1332
              GL+V IG ++     F     + +  P    D  G+ V+ +VL+I  T R   ++ +S
Sbjct: 149  --GLLVDIGVNV-----FLPGSQVDIRRPGDIGDFIGRVVQAEVLKIDDTRR---NIVIS 198

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             RS ++     + + L             +++L    I +G VKN+   G F+ L   +D
Sbjct: 199  RRSLIERQREEDRAYL-------------MQELEVGQIRKGIVKNIADFGAFVDLG-GID 244

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-N 1451
              + +++++   +  P +   I + +  +VL ++   +++ + LK  D       E    
Sbjct: 245  GLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIETKYP 304

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVK 1510
            + ++H G++V      V SYG F+ +E   + GL H+SE+S    V++   +   G+K+ 
Sbjct: 305  VESVHPGEVV-----NVMSYGAFVKLE-PGIEGLVHISEMSWTKRVNHPSELVNIGDKID 358

Query: 1511 VKILKVDKEKRRISLGMKSSYFKNDADNL 1539
            V IL VD E +++SLGMK +  KN  D +
Sbjct: 359  VMILGVDPEGQQLSLGMKQT-LKNPWDEV 386



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 171/469 (36%), Gaps = 71/469 (15%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           V  G VV G VI     G +V    GV    P    S+ +I +PG       + + RV+ 
Sbjct: 132 VAEGQVVTGTVIRKIKGGLLVDI--GVNVFLP---GSQVDIRRPGDI----GDFIGRVVQ 182

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 607
            +  +I  T +  ++  +  I     E    L        I  G +  I   G FV    
Sbjct: 183 AEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDL-G 241

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           G+ G    +++  +    P+ M  + Q ++ +++      ++I L    K     E+   
Sbjct: 242 GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIET 301

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------G 721
           K        V+ V P  VV  +    + K     E L  H+   +  K V  P      G
Sbjct: 302 KY------PVESVHPGEVVNVMSYGAFVKLEPGIEGLV-HISEMSWTKRVNHPSELVNIG 354

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            + D  +L +D E   L L  K +L N   ++            V G V N+   G F+ 
Sbjct: 355 DKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV---LERYPEGKDVKGKVRNLTNYGAFIE 411

Query: 781 FLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
               + G    S     ++ A  S+    GQ +   IL V+ +  RI L LKQ      D
Sbjct: 412 LEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDNDPWD 471

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                +                          +  G +++G+V +  +FGV +  E+   
Sbjct: 472 GDIPDK--------------------------YQPGQLVKGEVTKITNFGVFIGLEDG-- 503

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 941
           + G +   +LA   VE        G  I+  +L V   ER + LSLK V
Sbjct: 504 LEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 552



 Score = 48.5 bits (114), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 167/413 (40%), Gaps = 70/413 (16%)

Query: 189 VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 248
           +G++V   VL++DD ++ I   +  L  R     +   ++ ++ G +    VK+I D G 
Sbjct: 177 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 236

Query: 249 ILHFGLPSFTGFL------------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 296
            +  G     G L            P   L+ +  I+VK        V  IDR ++ + L
Sbjct: 237 FVDLG--GIDGLLHITDMAWERIGHPTEMLSIDQEIEVK--------VLHIDREKQKIAL 286

Query: 297 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
                D +      TK      ++ + PG +V+     ++  G  +       G V I  
Sbjct: 287 GLKQKDRNPWENIETK----YPVESVHPGEVVN-----VMSYGAFVKLEPGIEGLVHISE 337

Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSH--- 404
           +  T    +     N   K++  IL VDP  + + L +     NP+  +  R P      
Sbjct: 338 MSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEVLERYPEGKDVK 397

Query: 405 VKVGDIYDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEG 460
            KV ++ +    + ++ G+  LL +     +  ++ P+ V            LEK    G
Sbjct: 398 GKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEV------------LEK----G 441

Query: 461 SCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
             +  RIL     R    L    L    ++G +      +PG +VKG+V  + +FG  + 
Sbjct: 442 QEIECRILSVDEQRRRIALGLKQLDNDPWDGDI--PDKYQPGQLVKGEVTKITNFGVFIG 499

Query: 518 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 568
              G++ L  +  ++E ++  P +  KVG  +  +VL V +  ++I ++ K+ 
Sbjct: 500 LEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 552


>gi|104773910|ref|YP_618890.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            ATCC 11842]
 gi|103422991|emb|CAI97673.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            ATCC 11842]
          Length = 401

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 136/280 (48%), Gaps = 32/280 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            D +Q    EG  + G+++  + G  GL+V +G    G +  + + N  VSD L  Y  G+
Sbjct: 102  DKLQKDFEEGKTIEGKVTSSVRG--GLLVDVGTR--GFLPASLISNRFVSD-LKPY-IGK 155

Query: 1311 FVKCKVLEISRTVRGTF--HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
             +K K+ EI          H EL          +  S  +  DV                
Sbjct: 156  TIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDV---------------- 199

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
              V+G V  +T  G F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++  
Sbjct: 200  --VEGRVSRLTDFGSFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDND 256

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
              R+ +++K ++     Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HV
Sbjct: 257  RHRISLSIKQTEPSPFEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHV 311

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            SE++  HVD    + + G+ VKVK+L +D  KRRISL +K
Sbjct: 312  SEIAYKHVDKPSDVLKVGQDVKVKVLNIDPSKRRISLSIK 351



 Score = 74.3 bits (181), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  +  FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTDFGSFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 587
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 588 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G +  +   G FV   +G+QG    SE+      +PS +  VGQ VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDP 341

Query: 646 ASRRINLSF 654
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 23/188 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD+V GR+S++     G  V IG  + G VH +E+    V  P      GQ VK KV+ I
Sbjct: 197  GDVVEGRVSRLTDF--GSFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGI 253

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                     + LS++ +                  P    +    L+   +++G VK++T
Sbjct: 254  DND---RHRISLSIKQT-----------------EPSPFEQATSSLNEGDVIEGEVKSLT 293

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
            + G F+ ++  +   V +S ++  +V+ P     +G+ V  +VL+++P  +R+ +++K  
Sbjct: 294  NFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPSKRRISLSIKQV 353

Query: 1440 DSRTASQS 1447
            D   AS S
Sbjct: 354  DPENASSS 361



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 146/362 (40%), Gaps = 38/362 (10%)

Query: 537 VKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
           VK G  FKV    V R  G   +        T VK + A      +  +     G +T  
Sbjct: 65  VKLGDTFKV---YVVRRAGGDKENGDFFFSVTRVKEREAYDKLQKDFEEGKTIEGKVTSS 121

Query: 597 EKHGCFVRFYNGVQGFAPRSELG--LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            + G  V    G +GF P S +        +P    ++G+ +K +I    PA  R+ LS 
Sbjct: 122 VRGGLLVDV--GTRGFLPASLISNRFVSDLKP----YIGKTIKVKITEIDPAKNRLILSH 175

Query: 655 --MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL 708
             +++  R    + V     +G +V G V  +T     V +   G   G +    ++   
Sbjct: 176 KELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSFVDI---GGVDGLVHISEIS--Y 230

Query: 709 EHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHG 767
           +H      V+K G +   +++ +DN+   + LS K +  +  +Q     S ++   V+ G
Sbjct: 231 KHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQA---TSSLNEGDVIEG 287

Query: 768 YVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827
            V ++   G FV     + G    S+         S    VGQ V+  +L+++    RI+
Sbjct: 288 EVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLKVGQDVKVKVLNIDPSKRRIS 347

Query: 828 LSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV----EGFIIGSVIEGKVH 883
           LS+KQ    +  +S         ++    +SS +N    K++     GF +G +I  ++ 
Sbjct: 348 LSIKQVDPENASSS--------NDRPRARRSSNNNAFARKYMNNDDNGFSLGDMIGDQLK 399

Query: 884 ES 885
            S
Sbjct: 400 NS 401


>gi|386319260|ref|YP_006015423.1| 30S ribosomal protein S1 [Staphylococcus pseudintermedius ED99]
 gi|323464431|gb|ADX76584.1| ribosomal protein S1 [Staphylococcus pseudintermedius ED99]
          Length = 394

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 99/174 (56%), Gaps = 6/174 (3%)

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            K  E ++ +    +++G V  +T+ G FI L   +D  V +S LS  +V+SPE+   IG 
Sbjct: 184  KKAELLQSIKAGDVIEGKVARLTNFGAFIDLG-GVDGLVHVSELSHEHVKSPEEVVSIGD 242

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
             V  +V SVE  S+RV +++K  D+  +    I        GDIV G++ R+ S+G F+ 
Sbjct: 243  TVKVKVRSVEQDSERVSLSIK--DTLPSPFETIQ--EKYSEGDIVEGKVMRLASFGAFVE 298

Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            I  + L GL H+SE+S  H+     +   G+ V+VKIL ++ E+ RISL +K++
Sbjct: 299  I-GSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLD------IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           ++KV  V +G GL++D      IP++ +ST     I D ++ E R LE K +E    + R
Sbjct: 113 EAKVTEVVKG-GLVVDVGQRGFIPASLISTD---YIEDFSDYEGRVLELKVEELEPEKNR 168

Query: 467 -ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E       KA   +        +K G V++GKV  + +FGA +   GGV  L
Sbjct: 169 VILSRKAVEAEENEKKKAELLQS-------IKAGDVIEGKVARLTNFGAFIDL-GGVDGL 220

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   +G  +  +V  V+  S+R++++ K TL      I   Y+E 
Sbjct: 221 VHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSEG 280

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               I  G + ++   G FV   +G+QG    SE+       P  +   GQ V+ +I+  
Sbjct: 281 D---IVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGI 337

Query: 644 IPASRRINLSF 654
            P   RI+LS 
Sbjct: 338 NPEEERISLSI 348



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 10/170 (5%)

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAG 1420
            E L  N  ++  V  V   G  + + ++    +  S +S  Y+E    +F    G+++  
Sbjct: 104  EKLENNETIEAKVTEVVKGGLVVDVGQR--GFIPASLISTDYIE----DFSDYEGRVLEL 157

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
            +V  +EP   RV ++ K  ++    + +   L ++  GD++ G++ R+ ++G FI +   
Sbjct: 158  KVEELEPEKNRVILSRKAVEAEENEKKKAELLQSIKAGDVIEGKVARLTNFGAFIDLGGV 217

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  GL HVSELS +HV + E +   G+ VKVK+  V+++  R+SL +K +
Sbjct: 218  D--GLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDT 265



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 145/354 (40%), Gaps = 28/354 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  + G+V  ++    +V   GG    + P+  +S + +    +  KVG E+   
Sbjct: 12  NDIKEGDKITGEVQQIEDKHVVVHVNGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAY 71

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K KL    SYA   ++L         +T++ K G  V    G
Sbjct: 72  VTKIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDV--G 129

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD--- 665
            +GF P S +  D   E  S Y  G+V++ ++    P   R+ LS   K     E++   
Sbjct: 130 QRGFIPASLISTDY-IEDFSDYE-GRVLELKVEELEPEKNRVILS--RKAVEAEENEKKK 185

Query: 666 -----LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                 +K G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 186 AELLQSIKAGDVIEGKVARLTNFGAFIDL---GGVDGLVHVSELSH--EHVKSPEEVVSI 240

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  ++ +S  + LS K +L +  + +    S      +V G V  +   G FV
Sbjct: 241 GDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEKYSE---GDIVEGKVMRLASFGAFV 297

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
                L G    S+          +    GQ+V+  IL +N E  RI+LS+K +
Sbjct: 298 EIGSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKILGINPEEERISLSIKAA 351



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 160/379 (42%), Gaps = 85/379 (22%)

Query: 230 VQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVV- 284
           ++EG  +T  V+ IED   ++H     + G +P + L+    EN+   VK G  +   V 
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHVNGGKYNGIIPISQLSTYHVENANEVVKVGDEIGAYVT 73

Query: 285 -----------------RSIDRTRKVVYLSS---DPDTVSKCVTKDLKG-ISIDL----L 319
                            R ++  +   YL     + +T+   VT+ +KG + +D+     
Sbjct: 74  KIEVDEENETGSYILSKRKLEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVDVGQRGF 133

Query: 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILF 379
           +P  ++ST           +   + + G V    ++   P  N             R++ 
Sbjct: 134 IPASLISTD---------YIEDFSDYEGRVLELKVEELEPEKN-------------RVIL 171

Query: 380 VDPTSRAVGLTLN----PYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435
              + +AV    N      LL +      +K GD+  + KV R+    G  +D+      
Sbjct: 172 ---SRKAVEAEENEKKKAELLQS------IKAGDVI-EGKVARL-TNFGAFIDLGGVD-- 218

Query: 436 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE------GLATGILKASAFEGL 489
               V +S+++ E V+  E+    G  V+V++   R +E       L+      S FE +
Sbjct: 219 --GLVHVSELSHEHVKSPEEVVSIGDTVKVKV---RSVEQDSERVSLSIKDTLPSPFETI 273

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
              +S+   G +V+GKV+ + SFGA V+   G++ L  +  +S   I  PG+  + G  +
Sbjct: 274 QEKYSE---GDIVEGKVMRLASFGAFVEIGSGLQGLVHISEISHKHIGTPGEVLEPGQTV 330

Query: 550 VFRVLGV--KSKRITVTHK 566
             ++LG+  + +RI+++ K
Sbjct: 331 QVKILGINPEEERISLSIK 349



 Score = 41.2 bits (95), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 112/294 (38%), Gaps = 49/294 (16%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 725
           +K G  ++G V  +    VVV+V    Y+ G IP   L+  H+E+A     V+K G E  
Sbjct: 14  IKEGDKITGEVQQIEDKHVVVHVNGGKYN-GIIPISQLSTYHVENAN---EVVKVGDEIG 69

Query: 726 QLLVL-----DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
             +       +NE+ + +LS +   +   Q        +  N  +   V  +++ G  V 
Sbjct: 70  AYVTKIEVDEENETGSYILSKRK--LEEEQSYAYLQEKLENNETIEAKVTEVVKGGLVVD 127

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
              R  GF P S        D S   Y G+ +   + ++  E  R+ LS K       + 
Sbjct: 128 VGQR--GFIPASLISTDYIEDFSD--YEGRVLELKVEELEPEKNRVILSRKAVEAEENE- 182

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
                    ++K  +LQS K              G VIEGKV    +FG  +       V
Sbjct: 183 ---------KKKAELLQSIK-------------AGDVIEGKVARLTNFGAFIDL---GGV 217

Query: 901 YGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
            G +   +L+   V+S       G  ++  +  V +    V LS+K      F 
Sbjct: 218 DGLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFE 271


>gi|7579906|gb|AAF64246.1| 30S ribosomal protein S1 [Corynebacterium stationis]
          Length = 489

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 174/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELQAKEEPVTGTVIEVVKG--GLII 138

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +   +P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG----QELEAKIIELDKQRN---NVVLSRRAFLEQ 191

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 192  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 237

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H VG
Sbjct: 238  LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAVG 292

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   GE V VK++ +D 
Sbjct: 293  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGEDVMVKVIDIDL 351

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 352  ERRRISLSVKQA 363



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           ++G    SEL       P  + +VG+ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGEDVMVKVIDIDLERRRISLS 359



 Score = 47.4 bits (111), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEEL-QAKEEPVT-GTVIEVVKGGLIIDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+          +   VG+ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGEDVMVKVIDIDLERRRISLSVKQA-----DEDYTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDSETNEWKEGF 405


>gi|440716171|ref|ZP_20896684.1| 30S ribosomal protein S1 [Rhodopirellula baltica SWK14]
 gi|436438795|gb|ELP32313.1| 30S ribosomal protein S1 [Rhodopirellula baltica SWK14]
          Length = 613

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 182/382 (47%), Gaps = 61/382 (15%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKA 1215
            ++ +GQ   G V  + +  A + +   +   L I D A+E    P+E+        I + 
Sbjct: 232  ELEVGQIRKGIVKNIADFGAFVDLG-GIDGLLHITDMAWERIGHPTEM------LSIDQE 284

Query: 1216 VTGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +   VL I++EK+ + L L+     P+++        I        +H G++V      +
Sbjct: 285  IEVKVLHIDREKQKIALGLKQKDRNPWEN--------IETKYPVESVHPGEVV-----NV 331

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
            +S   G  V++ P + G VH +E+     V+ P    + G  +   +L +    +     
Sbjct: 332  MSY--GAFVKLEPGIEGLVHISEMSWTKRVNHPSELVNIGDKIDVMILGVDPEGQ----- 384

Query: 1330 ELSLRSSLDGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
            +LSL     GM  T  N  D            E +E       V+G V+N+T+ G FI L
Sbjct: 385  QLSL-----GMKQTLKNPWD------------EVLERYPEGKDVKGKVRNLTNYGAFIEL 427

Query: 1388 SRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1446
               +D  + +S++S    +  P +    G+ +  R+LSV+   +R+ + LK  D+     
Sbjct: 428  EEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDN-DPWD 486

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
             +I +      G +V G++ ++ ++G+FI +E+  L GL H+SEL+E  V++ E + + G
Sbjct: 487  GDIPD--KYQPGQLVKGEVTKITNFGVFIGLED-GLEGLLHISELAEHKVEDPEEVVKVG 543

Query: 1507 EKVKVKILKVDKEKRRISLGMK 1528
            + ++VK+L+VD ++R+I L +K
Sbjct: 544  DPIEVKVLRVDTDERKIGLSLK 565



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 182/389 (46%), Gaps = 47/389 (12%)

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1216
            E+ D + G+ V G + ++++EWAL+ +    K++  +    + P E Q       IG  V
Sbjct: 54   EQQDYNSGKIVDGRIVELNDEWALVDVG--FKSEGTVGLDEWGPEEDQP-----KIGDTV 106

Query: 1217 TGHVLSINKEKKLLRLVLRPF-QDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSG 1273
               +  +  E   L     P+    +S +  +  I  + M   + EG +V G + + + G
Sbjct: 107  KVLIEEMEDE---LGAADDPYGMISLSKRKAEKIIEWEAMMETVAEGQVVTGTVIRKIKG 163

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD-EGQFVKCKVLEISRTVRGTFHVELS 1332
              GL+V IG ++     F     + +  P    D  G+ V+ +VL+I  T R   ++ +S
Sbjct: 164  --GLLVDIGVNV-----FLPGSQVDIRRPGDIGDFIGRVVQAEVLKIDDTRR---NIVIS 213

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             RS ++     + + L             +++L    I +G VKN+   G F+ L   +D
Sbjct: 214  RRSLIERQREEDRAYL-------------MQELEVGQIRKGIVKNIADFGAFVDLG-GID 259

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-N 1451
              + +++++   +  P +   I + +  +VL ++   +++ + LK  D       E    
Sbjct: 260  GLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIETKYP 319

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVK 1510
            + ++H G++V      V SYG F+ +E   + GL H+SE+S    V++   +   G+K+ 
Sbjct: 320  VESVHPGEVV-----NVMSYGAFVKLE-PGIEGLVHISEMSWTKRVNHPSELVNIGDKID 373

Query: 1511 VKILKVDKEKRRISLGMKSSYFKNDADNL 1539
            V IL VD E +++SLGMK +  KN  D +
Sbjct: 374  VMILGVDPEGQQLSLGMKQT-LKNPWDEV 401



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 171/469 (36%), Gaps = 71/469 (15%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           V  G VV G VI     G +V    GV    P    S+ +I +PG       + + RV+ 
Sbjct: 147 VAEGQVVTGTVIRKIKGGLLVDI--GVNVFLP---GSQVDIRRPGDI----GDFIGRVVQ 197

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 607
            +  +I  T +  ++  +  I     E    L        I  G +  I   G FV    
Sbjct: 198 AEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDL-G 256

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           G+ G    +++  +    P+ M  + Q ++ +++      ++I L    K     E+   
Sbjct: 257 GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIET 316

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------G 721
           K        V+ V P  VV  +    + K     E L  H+   +  K V  P      G
Sbjct: 317 KY------PVESVHPGEVVNVMSYGAFVKLEPGIEGLV-HISEMSWTKRVNHPSELVNIG 369

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            + D  +L +D E   L L  K +L N   ++            V G V N+   G F+ 
Sbjct: 370 DKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV---LERYPEGKDVKGKVRNLTNYGAFIE 426

Query: 781 FLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
               + G    S     ++ A  S+    GQ +   IL V+ +  RI L LKQ      D
Sbjct: 427 LEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDNDPWD 486

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                +                          +  G +++G+V +  +FGV +  E+   
Sbjct: 487 GDIPDK--------------------------YQPGQLVKGEVTKITNFGVFIGLEDG-- 518

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 941
           + G +   +LA   VE        G  I+  +L V   ER + LSLK V
Sbjct: 519 LEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 567



 Score = 48.1 bits (113), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 167/413 (40%), Gaps = 70/413 (16%)

Query: 189 VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 248
           +G++V   VL++DD ++ I   +  L  R     +   ++ ++ G +    VK+I D G 
Sbjct: 192 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 251

Query: 249 ILHFGLPSFTGFL------------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 296
            +  G     G L            P   L+ +  I+VK        V  IDR ++ + L
Sbjct: 252 FVDLG--GIDGLLHITDMAWERIGHPTEMLSIDQEIEVK--------VLHIDREKQKIAL 301

Query: 297 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
                D +      TK      ++ + PG +V+     ++  G  +       G V I  
Sbjct: 302 GLKQKDRNPWENIETK----YPVESVHPGEVVN-----VMSYGAFVKLEPGIEGLVHISE 352

Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSH--- 404
           +  T    +     N   K++  IL VDP  + + L +     NP+  +  R P      
Sbjct: 353 MSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEVLERYPEGKDVK 412

Query: 405 VKVGDIYDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEG 460
            KV ++ +    + ++ G+  LL +     +  ++ P+ V            LEK    G
Sbjct: 413 GKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEV------------LEK----G 456

Query: 461 SCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
             +  RIL     R    L    L    ++G +      +PG +VKG+V  + +FG  + 
Sbjct: 457 QEIECRILSVDEQRRRIALGLKQLDNDPWDGDI--PDKYQPGQLVKGEVTKITNFGVFIG 514

Query: 518 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 568
              G++ L  +  ++E ++  P +  KVG  +  +VL V +  ++I ++ K+ 
Sbjct: 515 LEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 567


>gi|296119662|ref|ZP_06838220.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
 gi|295967545|gb|EFG80812.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
          Length = 489

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 175/372 (47%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDQIDAL 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELQAKEEPVTGTVIEVVKG--GLIL 138

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +   +P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG----QELEAKIIELDKQRN---NVVLSRRAFLEQ 191

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 192  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 237

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H VG
Sbjct: 238  LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAVG 292

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   GE+V VK++ +D 
Sbjct: 293  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGEEVMVKVIDIDL 351

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 352  ERRRISLSVKQA 363



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           ++G    SEL       P  + +VG+ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGEEVMVKVIDIDLERRRISLS 359



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEEL-QAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+          +   VG+ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGEEVMVKVIDIDLERRRISLSVKQA-----DEDYTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDSETNEWKEGF 405



 Score = 41.2 bits (95), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 112/259 (43%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R      +IG+ +   ++ ++K++  + L  R F +    +
Sbjct: 136  LILDIGLRGFLPASLVEMRRVRDLEPYIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSE 195

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                       F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 196  V-------RSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLGG-VDGLVHVSELSWKHIDH 245

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 246  PSEVVTVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRVFAR 287

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
                +   IV G V  +   G F+ +   ++  V +S L+  +VE P++   +G+ V  +
Sbjct: 288  TH--AVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGEEVMVK 345

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ +++K +D
Sbjct: 346  VIDIDLERRRISLSVKQAD 364


>gi|423397689|ref|ZP_17374890.1| ribosomal protein S1 [Bacillus cereus BAG2X1-1]
 gi|401649735|gb|EJS67313.1| ribosomal protein S1 [Bacillus cereus BAG2X1-1]
          Length = 382

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVALQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              + VGDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKVGDIREGVVKRLATFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          ++   +  D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKVGD--IREGVVKRLATFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354


>gi|334336975|ref|YP_004542127.1| RNA binding S1 domain-containing protein [Isoptericola variabilis
            225]
 gi|334107343|gb|AEG44233.1| RNA binding S1 domain protein [Isoptericola variabilis 225]
          Length = 491

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 185/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 12   VAVNDIGTEDDFLAAVDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 71

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 72   KHDVDPGEV------VAVGDVVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 118

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 119  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYVGKE----IEA 172

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+    T S   ST + T          L    +  G 
Sbjct: 173  KIIELDKNRN---NVVLSRRAWLE---QTQSEVRSTFLQT----------LQKGQVRSGV 216

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 217  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSL 275

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+ 
Sbjct: 276  SLKAT-----QEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAV 329

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +   G++V VK++ +D E+RRISL +K +
Sbjct: 330  RHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQA 366



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 207 LQKGQVRSGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 265

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T          ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 266 VDFDRERVSLSLKATQEDPWQTFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 322

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +     P  +  VGQ V  +++      RRI+LS 
Sbjct: 323 HISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSL 363



 Score = 51.2 bits (121), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG  +   VL  + 
Sbjct: 37  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDVVEALVLQKED 96

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 153 LVEMRRVRDLAP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQTLQ 208

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 209 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 262

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 263 VLDVDFDRERVSLSLKATQEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 318

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VGQ V   ++D++ E  RI+LSLKQ+
Sbjct: 319 EGLVHISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQA 366



 Score = 47.4 bits (111), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 132/293 (45%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R      ++GK 
Sbjct: 111  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLAPYVGKE 169

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++ +  +QT + +G +  G +S I++   
Sbjct: 170  IEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRSTFLQT-LQKGQVRSGVVSSIVNF-- 223

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 224  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRE---RVSLSLKA 279

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +    T +   +     PGK                 V  +   G F+ +   ++  V
Sbjct: 280  TQEDPWQTFARTHAIGQVVPGK-----------------VTKLVPFGAFVRVEDGIEGLV 322

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G+ V  +V+ ++   +R+ ++LK ++     +SE
Sbjct: 323  HISELAVRHVELPEQVVTVGQEVFVKVIDIDLERRRISLSLKQANEGVDPESE 375


>gi|333919158|ref|YP_004492739.1| RNA binding S1 domain-containing protein [Amycolicicoccus subflavus
            DQS3-9A1]
 gi|333481379|gb|AEF39939.1| RNA binding S1 domain protein [Amycolicicoccus subflavus DQS3-9A1]
          Length = 489

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 183/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + +++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 11   VAINDIGSAEEFLAAVDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 70

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +PSE+       ++G  V   VL+  KE K  RL+L   +        + +   ++
Sbjct: 71   KHDVDPSEV------VNVGDEVEALVLT--KEDKDGRLILSKKR-----AQYERAWGTIE 117

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 118  ELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----IEA 171

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L  + + +G 
Sbjct: 172  KIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKSQVRKGV 215

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 216  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSL 274

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E
Sbjct: 275  SLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAE 328

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  + +    +   VK++ +D E+RRISL +K +
Sbjct: 329  RHVEVPDQVVAVNDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 147/364 (40%), Gaps = 50/364 (13%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +PS + +VG  V+  +++     
Sbjct: 38  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKEDKD 97

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 98  GRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGF----LP---- 149

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASH-IHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  H +  +
Sbjct: 150 ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKS 209

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VG  V   +LDV+ +
Sbjct: 210 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 301

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAA-------ILDVAKAERLVD 935
            +   FG  V  EE   + G +   +LA   VE    + A        ++D+    R + 
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVNDDAMVKVIDIDLERRRIS 359

Query: 936 LSLK 939
           LSLK
Sbjct: 360 LSLK 363



 Score = 43.9 bits (102), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 147/354 (41%), Gaps = 31/354 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KDGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
              +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KSQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            G    S+  +       +   V       ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVNDDAMVKVIDIDLERRRISLSLKQANEEYTE 371


>gi|116513917|ref|YP_812823.1| 30S ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            ATCC BAA-365]
 gi|385815547|ref|YP_005851938.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            2038]
 gi|116093232|gb|ABJ58385.1| SSU ribosomal protein S1P [Lactobacillus delbrueckii subsp.
            bulgaricus ATCC BAA-365]
 gi|325125584|gb|ADY84914.1| 30S Ribosomal protein S1 [Lactobacillus delbrueckii subsp. bulgaricus
            2038]
          Length = 401

 Score = 87.0 bits (214), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 136/280 (48%), Gaps = 32/280 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            D +Q    EG  + G+++  + G  GL+V +G    G +  + + N  VSD L  Y  G+
Sbjct: 102  DKLQKDFEEGKTIEGKVTSSVRG--GLLVDVGTR--GFLPASLISNRFVSD-LKPY-IGK 155

Query: 1311 FVKCKVLEISRTVRGTF--HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
             +K K+ EI          H EL          +  S  +  DV                
Sbjct: 156  TIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDV---------------- 199

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
              V+G V  +T+ G F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++  
Sbjct: 200  --VEGRVSRLTNFGSFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDND 256

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
              R+ +++K ++     Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HV
Sbjct: 257  RHRISLSIKQTEPSPFEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHV 311

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            SE++  HVD    +   G KVKVK+L +D  KRRISL +K
Sbjct: 312  SEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIK 351



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 587
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 588 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G +  +   G FV   +G+QG    SE+      +PS +  VG  VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDP 341

Query: 646 ASRRINLSF 654
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 23/197 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            +N+ + +  GD+V GR+S++ +   G  V IG  + G VH +E+    V  P      GQ
Sbjct: 188  ENVASQLVVGDVVEGRVSRLTNF--GSFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQ 244

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
             VK KV+ I         + LS++ +                  P    +    L+   +
Sbjct: 245  DVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATSSLNEGDV 284

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            ++G VK++T+ G F+ ++  +   V +S ++  +V+ P     +G  V  +VL+++P  +
Sbjct: 285  IEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKR 344

Query: 1431 RVEVTLKTSDSRTASQS 1447
            R+ +++K  D   AS S
Sbjct: 345  RISLSIKQVDPENASSS 361



 Score = 43.9 bits (102), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 141/365 (38%), Gaps = 53/365 (14%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R +   D          +G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTFKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 779
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  +   G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFV 214

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
           + G +   ++A   V+        G  ++  +L++  ++R + LS+K V  +    +N  
Sbjct: 305 IQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVDPENASSSNDR 364

Query: 953 RQAQK 957
            +A++
Sbjct: 365 PRARR 369


>gi|417300529|ref|ZP_12087738.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47]
 gi|421613092|ref|ZP_16054184.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH28]
 gi|327543203|gb|EGF29638.1| 30S ribosomal protein S1 [Rhodopirellula baltica WH47]
 gi|408496112|gb|EKK00679.1| 30S ribosomal protein S1 [Rhodopirellula baltica SH28]
          Length = 598

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 182/382 (47%), Gaps = 61/382 (15%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKA 1215
            ++ +GQ   G V  + +  A + +   +   L I D A+E    P+E+        I + 
Sbjct: 217  ELEVGQIRKGIVKNIADFGAFVDLG-GIDGLLHITDMAWERIGHPTEM------LSIDQE 269

Query: 1216 VTGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
            +   VL I++EK+ + L L+     P+++        I        +H G++V      +
Sbjct: 270  IEVKVLHIDREKQKIALGLKQKDRNPWEN--------IETKYPVESVHPGEVV-----NV 316

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
            +S   G  V++ P + G VH +E+     V+ P    + G  +   +L +    +     
Sbjct: 317  MSY--GAFVKLEPGIEGLVHISEMSWTKRVNHPSELVNIGDKIDVMILGVDPEGQ----- 369

Query: 1330 ELSLRSSLDGMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
            +LSL     GM  T  N  D            E +E       V+G V+N+T+ G FI L
Sbjct: 370  QLSL-----GMKQTLKNPWD------------EVLERYPEGKDVKGKVRNLTNYGAFIEL 412

Query: 1388 SRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQ 1446
               +D  + +S++S    +  P +    G+ +  R+LSV+   +R+ + LK  D+     
Sbjct: 413  EEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDN-DPWD 471

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
             +I +      G +V G++ ++ ++G+FI +E+  L GL H+SEL+E  V++ E + + G
Sbjct: 472  GDIPD--KYQPGQLVKGEVTKITNFGVFIGLED-GLEGLLHISELAEHKVEDPEEVVKVG 528

Query: 1507 EKVKVKILKVDKEKRRISLGMK 1528
            + ++VK+L+VD ++R+I L +K
Sbjct: 529  DPIEVKVLRVDTDERKIGLSLK 550



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 182/389 (46%), Gaps = 47/389 (12%)

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1216
            E+ D + G+ V G + ++++EWAL+ +    K++  +    + P E Q       IG  V
Sbjct: 39   EQQDYNSGKIVDGRIVELNDEWALVDVG--FKSEGTVGLDEWGPEEDQP-----KIGDTV 91

Query: 1217 TGHVLSINKEKKLLRLVLRPF-QDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSG 1273
               +  +  E   L     P+    +S +  +  I  + M   + EG +V G + + + G
Sbjct: 92   KVLIEEMEDE---LGAADDPYGMISLSKRKAEKIIEWEAMMETVAEGQVVTGTVIRKIKG 148

Query: 1274 VGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYD-EGQFVKCKVLEISRTVRGTFHVELS 1332
              GL+V IG ++     F     + +  P    D  G+ V+ +VL+I  T R   ++ +S
Sbjct: 149  --GLLVDIGVNV-----FLPGSQVDIRRPGDIGDFIGRVVQAEVLKIDDTRR---NIVIS 198

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             RS ++     + + L             +++L    I +G VKN+   G F+ L   +D
Sbjct: 199  RRSLIERQREEDRAYL-------------MQELEVGQIRKGIVKNIADFGAFVDLG-GID 244

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-N 1451
              + +++++   +  P +   I + +  +VL ++   +++ + LK  D       E    
Sbjct: 245  GLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIETKYP 304

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVK 1510
            + ++H G++V      V SYG F+ +E   + GL H+SE+S    V++   +   G+K+ 
Sbjct: 305  VESVHPGEVV-----NVMSYGAFVKLE-PGIEGLVHISEMSWTKRVNHPSELVNIGDKID 358

Query: 1511 VKILKVDKEKRRISLGMKSSYFKNDADNL 1539
            V IL VD E +++SLGMK +  KN  D +
Sbjct: 359  VMILGVDPEGQQLSLGMKQT-LKNPWDEV 386



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 171/469 (36%), Gaps = 71/469 (15%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           V  G VV G VI     G +V    GV    P    S+ +I +PG       + + RV+ 
Sbjct: 132 VAEGQVVTGTVIRKIKGGLLVDI--GVNVFLP---GSQVDIRRPGDI----GDFIGRVVQ 182

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFVRFYN 607
            +  +I  T +  ++  +  I     E    L        I  G +  I   G FV    
Sbjct: 183 AEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGAFVDL-G 241

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLV 667
           G+ G    +++  +    P+ M  + Q ++ +++      ++I L    K     E+   
Sbjct: 242 GIDGLLHITDMAWERIGHPTEMLSIDQEIEVKVLHIDREKQKIALGLKQKDRNPWENIET 301

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------G 721
           K        V+ V P  VV  +    + K     E L  H+   +  K V  P      G
Sbjct: 302 KY------PVESVHPGEVVNVMSYGAFVKLEPGIEGLV-HISEMSWTKRVNHPSELVNIG 354

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            + D  +L +D E   L L  K +L N   ++            V G V N+   G F+ 
Sbjct: 355 DKIDVMILGVDPEGQQLSLGMKQTLKNPWDEV---LERYPEGKDVKGKVRNLTNYGAFIE 411

Query: 781 FLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
               + G    S     ++ A  S+    GQ +   IL V+ +  RI L LKQ      D
Sbjct: 412 LEEGIDGLLHVSDMSWTRKIAHPSEVLEKGQEIECRILSVDEQRRRIALGLKQLDNDPWD 471

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
                +                          +  G +++G+V +  +FGV +  E+   
Sbjct: 472 GDIPDK--------------------------YQPGQLVKGEVTKITNFGVFIGLEDG-- 503

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 941
           + G +   +LA   VE        G  I+  +L V   ER + LSLK V
Sbjct: 504 LEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 552



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 167/413 (40%), Gaps = 70/413 (16%)

Query: 189 VGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 248
           +G++V   VL++DD ++ I   +  L  R     +   ++ ++ G +    VK+I D G 
Sbjct: 177 IGRVVQAEVLKIDDTRRNIVISRRSLIERQREEDRAYLMQELEVGQIRKGIVKNIADFGA 236

Query: 249 ILHFGLPSFTGFL------------PRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYL 296
            +  G     G L            P   L+ +  I+VK        V  IDR ++ + L
Sbjct: 237 FVDLG--GIDGLLHITDMAWERIGHPTEMLSIDQEIEVK--------VLHIDREKQKIAL 286

Query: 297 S---SDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFH 353
                D +      TK      ++ + PG +V+     ++  G  +       G V I  
Sbjct: 287 GLKQKDRNPWENIETK----YPVESVHPGEVVN-----VMSYGAFVKLEPGIEGLVHISE 337

Query: 354 LQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSH--- 404
           +  T    +     N   K++  IL VDP  + + L +     NP+  +  R P      
Sbjct: 338 MSWTKRVNHPSELVNIGDKIDVMILGVDPEGQQLSLGMKQTLKNPWDEVLERYPEGKDVK 397

Query: 405 VKVGDIYDQSKVVRVDRGLGLLLDIP----STPVSTPAYVTISDVAEEEVRKLEKKYKEG 460
            KV ++ +    + ++ G+  LL +     +  ++ P+ V            LEK    G
Sbjct: 398 GKVRNLTNYGAFIELEEGIDGLLHVSDMSWTRKIAHPSEV------------LEK----G 441

Query: 461 SCVRVRILGF---RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQ 517
             +  RIL     R    L    L    ++G +      +PG +VKG+V  + +FG  + 
Sbjct: 442 QEIECRILSVDEQRRRIALGLKQLDNDPWDGDI--PDKYQPGQLVKGEVTKITNFGVFIG 499

Query: 518 FPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 568
              G++ L  +  ++E ++  P +  KVG  +  +VL V +  ++I ++ K+ 
Sbjct: 500 LEDGLEGLLHISELAEHKVEDPEEVVKVGDPIEVKVLRVDTDERKIGLSLKRV 552


>gi|407454002|ref|YP_006733110.1| 30S ribosomal protein S1 [Chlamydia psittaci 84/55]
 gi|407460660|ref|YP_006738435.1| 30S ribosomal protein S1 [Chlamydia psittaci WC]
 gi|405780761|gb|AFS19511.1| ribosomal protein S1 [Chlamydia psittaci 84/55]
 gi|405787394|gb|AFS26138.1| ribosomal protein S1 [Chlamydia psittaci WC]
          Length = 504

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 177/379 (46%), Gaps = 58/379 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 137  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 191

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  + G+I K+L
Sbjct: 192  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRITGKIVKLL 236

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNI-CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                G  ++I   + G +H +E+  +  V DP    ++G  V+  VL I +        +
Sbjct: 237  PY--GAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKD-----EGK 289

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            +SL     G+  T  +        P  ++E  E     + V+  +KN+T+ G F+ L   
Sbjct: 290  ISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVRAEIKNLTNYGAFVELEPG 334

Query: 1391 LDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
            ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +K   S   ++ E 
Sbjct: 335  IEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVDKESKKITLGVKQLSSNPWNEIE- 393

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
                    G ++ G + ++ ++G F+ ++N  + GL HVSELSE     IE I   G+ V
Sbjct: 394  ---EMFPTGSVISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFSKIEDIISIGDSV 449

Query: 1510 KVKILKVDKEKRRISLGMK 1528
              K++K+D + +++SL +K
Sbjct: 450  SAKVIKLDPDHKKVSLSVK 468



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I + + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 53   EGSIVKGQIIRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 103

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 104  ILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 147

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 148  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALG 206

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  + G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 207  LKQKEHNPWEDIE----KKYPPGKRITGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 261

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 262  NVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 306



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
           G+ V+ ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+ +   +L V 
Sbjct: 312 GLHVRAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSIVEAVILSVD 371

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            +SK+IT+  K+        I   +   +   +  G +TKI   G FV   NG++G    
Sbjct: 372 KESKKITLGVKQLSSNPWNEIEEMFPTGS---VISGVVTKITAFGAFVELQNGIEGLIHV 428

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 429 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 466



 Score = 42.0 bits (97), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 60/375 (16%)

Query: 767  GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
            G V NI + G F+   G + G    +     +    S+   + Q +   IL V+ E GR+
Sbjct: 145  GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRV 203

Query: 827  TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
             L LKQ           +EH   E+             E K    +  G  I GK+ +  
Sbjct: 204  ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRITGKIVKLL 236

Query: 887  DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
             +G  +  EE      H     ++ +       V  G  ++A +L + K E  + L LK 
Sbjct: 237  PYGAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQ 296

Query: 941  VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
                   E N     ++K         +G+H     I  +      V   P     I  +
Sbjct: 297  T------EHNPWDNIEEKY-------PIGLHVRAE-IKNLTNYGAFVELEPGIEGLIHIS 342

Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 1060
             +S       P + F  G  V A ++++   S   ++ L +K +S     S+   + +  
Sbjct: 343  DMSWIKKVSHPSELFKKGSIVEAVILSVDKESK--KITLGVKQLS-----SNPWNEIEEM 395

Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
            +  GS++   +T+I      ++   G  G IH++E+++   + +E++ S   IG +V+A+
Sbjct: 396  FPTGSVISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFSKIEDIIS---IGDSVSAK 452

Query: 1121 IIAKSNKPDMKKSFL 1135
            +I     PD KK  L
Sbjct: 453  VIKLD--PDHKKVSL 465



 Score = 41.6 bits (96), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 34/345 (9%)

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 560
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 144 KGIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGR 202

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELG- 619
           + +  K+        I   Y     + IT G I K+  +G F+    G++G    SE+  
Sbjct: 203 VALGLKQKEHNPWEDIEKKYPPG--KRIT-GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 259

Query: 620 LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 675
           +    +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V  
Sbjct: 260 VKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVRA 317

Query: 676 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 728
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 318 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGSIVEAVIL 368

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLGRLTG 787
            +D ES  + L  K    N   ++      + P  SV+ G V  I   G FV     + G
Sbjct: 369 SVDKESKKITLGVKQLSSNPWNEI----EEMFPTGSVISGVVTKITAFGAFVELQNGIEG 424

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
               S+  +   + +     +G SV + ++ ++ +  +++LS+K+
Sbjct: 425 LIHVSELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLSVKE 469


>gi|390629414|ref|ZP_10257409.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
 gi|390485318|emb|CCF29757.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
          Length = 410

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 139/269 (51%), Gaps = 27/269 (10%)

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
            DIV   +++++ G  GLVV +   + G V  + ++N  V D L+ Y +GQ ++ K++EI+
Sbjct: 114  DIVEAPVTQVVKG--GLVVDV-EGVRGFVPASMIENRFVQD-LNQY-KGQTIRAKIIEIN 168

Query: 1321 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1380
                    + LS R  L+   S   S +               +LS   +V+G V  +T+
Sbjct: 169  AA---DSRLILSRRDVLNEERSEALSRV-------------FNELSVGDVVEGKVARMTN 212

Query: 1381 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  +R+ +++K   
Sbjct: 213  FGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPEKERISLSIKA-- 269

Query: 1441 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
              T         +    G ++ G +KRV  +G F+ +    + GL HVS++S  H+ N  
Sbjct: 270  --TQPGPWEAAAAEAPEGTVLEGTVKRVVDFGAFVEV-FPGVEGLVHVSQISHKHIANPS 326

Query: 1501 TIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
             + +AG+KVKVK+L+V+ +K+R+SL +K+
Sbjct: 327  DVLKAGDKVKVKVLEVNPDKQRLSLSIKA 355



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 17/248 (6%)

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVT----ISDVAEEEVRKLEKKYKEGSCVRVRIL 468
           ++ V +V +G GL++D+       PA +     + D+ + + + +  K  E +    R++
Sbjct: 117 EAPVTQVVKG-GLVVDVEGVRGFVPASMIENRFVQDLNQYKGQTIRAKIIEINAADSRLI 175

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
             R        +L     E L    +++  G VV+GKV  + +FGA +   GGV  L  +
Sbjct: 176 LSRR------DVLNEERSEALSRVFNELSVGDVVEGKVARMTNFGAFIDL-GGVDGLVHV 228

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDR 586
             +S   + +P     VG E+  +VLG+  + +RI+++ K T      A  +   E T  
Sbjct: 229 SEISHERVSQPSDVLSVGEEVKVKVLGLDPEKERISLSIKATQPGPWEAAAAEAPEGT-- 286

Query: 587 LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646
            +  G + ++   G FV  + GV+G    S++       PS +   G  VK +++   P 
Sbjct: 287 -VLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKVLEVNPD 345

Query: 647 SRRINLSF 654
            +R++LS 
Sbjct: 346 KQRLSLSI 353



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1472
            G+ +  +++ +     R+ ++ +   ++ R+ + S + N   L VGD+V G++ R+ ++G
Sbjct: 157  GQTIRAKIIEINAADSRLILSRRDVLNEERSEALSRVFN--ELSVGDVVEGKVARMTNFG 214

Query: 1473 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             FI +   +  GL HVSE+S + V     +   GE+VKVK+L +D EK RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPEKERISLSIKAT 270



 Score = 45.8 bits (107), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 23/192 (11%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD+V G+++++ +   G  + +G  + G VH +E+ +  VS P      G+ VK KVL +
Sbjct: 200  GDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGL 256

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                     + LS++++                  PG       +     +++G VK V 
Sbjct: 257  DPEKE---RISLSIKAT-----------------QPGPWEAAAAEAPEGTVLEGTVKRVV 296

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
              G F+ +   ++  V +S +S  ++ +P      G  V  +VL V P  +R+ +++K  
Sbjct: 297  DFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKVKVLEVNPDKQRLSLSIKAL 356

Query: 1440 DSRTASQSEINN 1451
            +   A +   NN
Sbjct: 357  EEAPAREEGSNN 368



 Score = 41.2 bits (95), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 30/230 (13%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL-ADHLEHAT-VMKSVIKPGYEF 724
           VK+G +V G V  +     V+  I     +G IP   L AD   +   ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELTADRDANVNDLVKVGDVLDLVV 77

Query: 725 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
              +  D E  + LLS +   + + +     AS  + + +V   V  +++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEG- 134

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS +             
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRD------------ 180

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
              L EE+   L          +      +G V+EGKV    +FG  +  
Sbjct: 181 --VLNEERSEALS---------RVFNELSVGDVVEGKVARMTNFGAFIDL 219


>gi|418029506|ref|ZP_12668044.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
            subsp. bulgaricus CNCM I-1632]
 gi|354689812|gb|EHE89785.1| hypothetical protein LDBUL1632_00838 [Lactobacillus delbrueckii
            subsp. bulgaricus CNCM I-1632]
          Length = 401

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 136/280 (48%), Gaps = 32/280 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            D +Q    EG  + G+++  + G  GL+V +G    G +  + + N  VSD L  Y  G+
Sbjct: 102  DKLQKDFEEGKTIEGKVTSSVRG--GLLVDVGTR--GFLPASLISNRFVSD-LKPY-IGK 155

Query: 1311 FVKCKVLEISRTVRGTF--HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
             +K K+ EI          H EL          +  S  +  DV                
Sbjct: 156  TIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDV---------------- 199

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
              V+G V  +T+ G F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++  
Sbjct: 200  --VEGRVSRLTNFGSFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDND 256

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
              R+ +++K ++     Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HV
Sbjct: 257  RHRISLSIKQTEPSPFEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHV 311

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            SE++  HVD    +   G KVKVK+L +D  KRRISL +K
Sbjct: 312  SEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIK 351



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 20/249 (8%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  + +FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTNFGSFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 587
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 588 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G +  +   G FV   +G+QG    SE+      +PS +  VG  VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDP 341

Query: 646 ASRRINLSF 654
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 93/197 (47%), Gaps = 23/197 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            +N+ + +  GD+V GR+S++ +   G  V IG  + G VH +E+    V  P      GQ
Sbjct: 188  ENVASQLVVGDVVEGRVSRLTNF--GSFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQ 244

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
             VK KV+ I         + LS++ +                  P    +    L+   +
Sbjct: 245  DVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATSSLNEGDV 284

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            ++G VK++T+ G F+ ++  +   V +S ++  +V+ P     +G  V  +VL+++P  +
Sbjct: 285  IEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKR 344

Query: 1431 RVEVTLKTSDSRTASQS 1447
            R+ +++K  D   AS S
Sbjct: 345  RISLSIKQVDPENASSS 361



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 142/365 (38%), Gaps = 53/365 (14%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R +   D          +G  +K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTIKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 779
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  +   G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTNFGSFV 214

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
           + G +   ++A   V+        G  ++  +L++  ++R + LS+K V  +    +N  
Sbjct: 305 IQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVDPENASSSNDR 364

Query: 953 RQAQK 957
            +A++
Sbjct: 365 PRARR 369


>gi|336320735|ref|YP_004600703.1| RNA binding S1 domain protein [[Cellvibrio] gilvus ATCC 13127]
 gi|336104316|gb|AEI12135.1| RNA binding S1 domain protein [[Cellvibrio] gilvus ATCC 13127]
          Length = 492

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 173/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD +  LL I       + ++   +    +P E+        +G  V   
Sbjct: 39   GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEV------VKVGDEVEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  +V G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGVVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLGPYVGKE----IEAKIIELDKNRN---NVVLSRRAWLE- 195

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
               T S   ST + T          L    +  G V ++ + G F+ L   +D  V +S 
Sbjct: 196  --QTQSEVRSTFLQT----------LQKGQVRPGVVSSIVNFGAFVDLG-GVDGLVHVSE 242

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G+ V   VL V+   +RV ++LK +      +      +  H +G
Sbjct: 243  LSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKAT-----QEDPWQAFARTHAIG 297

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             +V G++ ++  +G F+ +E+  + GL H+SEL+  HV+  E + + G+ V VK++ +D 
Sbjct: 298  QVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDL 356

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 357  ERRRISLSLKQA 368



 Score = 56.6 bits (135), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLD 267

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 268 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL +     P  +  VG  V  +++      RRI+LS 
Sbjct: 325 HISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSL 365



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 153/351 (43%), Gaps = 37/351 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG+  KVG E+   VL  + 
Sbjct: 39  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVKVGDEVEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 ELGL----DPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 666
            + +    D G       +VG+ ++ +I+      +++  SRR  L       R +    
Sbjct: 155 LVEMRRVRDLGP------YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLQT 208

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD 725
           ++ G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E  
Sbjct: 209 LQKGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVT 262

Query: 726 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFL 782
            ++L +D +   + LS K     + Q+ P  A +  H    VV G V  ++  G FVR  
Sbjct: 263 VEVLDVDFDRERVSLSLK-----ATQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVE 317

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             + G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 318 DGIEGLVHISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQA 368



 Score = 44.7 bits (104), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 132/293 (45%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R      ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLGPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++ +  +QT + +G +  G +S I++   
Sbjct: 172  IEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRSTFLQT-LQKGQVRPGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQAFARTHAI--GQVVPGKVTKLVPFGAFVRVEDGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE PE+   +G  V  +V+ ++   +R+ ++LK ++     +SE
Sbjct: 325  HISELAVRHVEIPEQVVQVGDDVFVKVIDIDLERRRISLSLKQANEGFDPESE 377


>gi|433455415|ref|ZP_20413498.1| 30S ribosomal protein S1 [Arthrobacter crystallopoietes BAB-32]
 gi|432197620|gb|ELK53989.1| 30S ribosomal protein S1 [Arthrobacter crystallopoietes BAB-32]
          Length = 491

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 185/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG+   F    D +I     G  V G V KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGTPEDFLAAVDATIKYFNDGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+        +G  V   VL+  KE K  RL+L   +        DI     +
Sbjct: 74   KHDVDPGEV------VAVGDEVEALVLT--KEDKEGRLILSKKRAQYERAWGDI-----E 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G    Q ++ 
Sbjct: 121  KVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIG----QQIEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+    T S   ST        L K+E      +  G 
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLE---QTQSEVRST-------FLNKLE---KGQVRPGV 218

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 219  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSL 277

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SEL+ 
Sbjct: 278  SLKAT-----QEDPWQTFARTHALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAV 331

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E +   G+++ VK++ +D E+RRISL +K +
Sbjct: 332  RHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 147/365 (40%), Gaps = 46/365 (12%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  +  G + K+++    +      +G  P  EL +    +P  +  VG  V+  +++  
Sbjct: 38  DGDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDEVEALVLTKE 97

Query: 645 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS        +  D+ K+     +V+G V  V    +++ +  +G+    +P 
Sbjct: 98  DKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVIEVVKGGLILDIGLRGF----LP- 152

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 759
              A  +E   V       G + + +++ LD   +N++LS +  L  +  ++ S   + +
Sbjct: 153 ---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKL 209

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +L+V
Sbjct: 210 EKGQVRPGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEV 268

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  R++LSLK +       +F + H L                          G V+ 
Sbjct: 269 DLDRERVSLSLK-ATQEDPWQTFARTHAL--------------------------GQVVP 301

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLV 934
           GKV +   FG  V  E+  +    I+     H +LA   V  G  +   ++D+    R +
Sbjct: 302 GKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRI 361

Query: 935 DLSLK 939
            LSLK
Sbjct: 362 SLSLK 366



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 212 GQVRPGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDL 270

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      +  G +TK+   G FVR  +G++G    S
Sbjct: 271 DRERVSLSLKATQEDPWQTFARTHALGQ---VVPGKVTKLVPFGAFVRVEDGIEGLVHIS 327

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           EL +        +  VG  +  +++      RRI+LS 
Sbjct: 328 ELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSL 365



 Score = 48.9 bits (115), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG+   VG E+   VL  + 
Sbjct: 39  GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDEVEALVLTKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGDIEKVKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    ++GQ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 155 LVEMRRVRDLAP----YIGQQIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSTFLNKLE 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRPGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 265 VLEVDLDRERVSLSLKATQEDPWQTF----ARTHALGQVVPGKVTKLVPFGAFVRVEDGI 320

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VG  +   ++D++ E  RI+LSLKQ+
Sbjct: 321 EGLVHISELAVRHVELAEQVVSVGDELFVKVIDIDLERRRISLSLKQA 368


>gi|415885333|ref|ZP_11547261.1| 30S ribosomal protein S1 [Bacillus methanolicus MGA3]
 gi|387591002|gb|EIJ83321.1| 30S ribosomal protein S1 [Bacillus methanolicus MGA3]
          Length = 379

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 177/374 (47%), Gaps = 42/374 (11%)

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1216
            E  +  +G +V G V KV+ +  L ++          LD     SEL       H+ KA 
Sbjct: 9    EVTNFQVGDKVKGKVIKVEEKHVLASVENSK------LDGIIPISELS----SLHVEKA- 57

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGV 1274
               V+++  E +L  + +      +S + +D     D+++     G+I    +  ++ G 
Sbjct: 58   -EDVVTVGDELELEVIKVEEEALILSKRKIDAEKAWDDLEKKFESGEIFEAEVKDVVKG- 115

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
             GLVV +G  + G V  + +++  V D  S Y +G+ +  K++E+ +         LS R
Sbjct: 116  -GLVVDLG--VRGFVPASLVEDHFVED-FSDY-KGKPLTFKIVELDKEKNRLI---LSHR 167

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + ++         L             +E L P  +++G ++ +T  G F+ +   +D  
Sbjct: 168  AVVEEEKIRQKQSL-------------LESLQPGQVLEGTIQRITDFGAFVDIG-GVDGL 213

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +VE P      G+ V  +VLSV+  + R+ +++K     T      N    
Sbjct: 214  VHISQLSHQHVEKPSDVVEEGQKVNVKVLSVDRDNNRISLSIK----ETLPGPWTNISEK 269

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
               G ++ G +KR+ SYG F+ +  + + GL H+S++S  H+     + + G+KV+VK+L
Sbjct: 270  APKGSVLEGTVKRIVSYGAFVEV-FSGVEGLVHISQISHKHIGTPHEVLKEGQKVQVKVL 328

Query: 1515 KVDKEKRRISLGMK 1528
             V++E++R+SL +K
Sbjct: 329  DVNEEQQRLSLSIK 342



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
            L +L  G ++ G I+R+  +G F+ I   +  GL H+S+LS  HV+    +   G+KV V
Sbjct: 182  LESLQPGQVLEGTIQRITDFGAFVDIGGVD--GLVHISQLSHQHVEKPSDVVEEGQKVNV 239

Query: 1512 KILKVDKEKRRISLGMKSS 1530
            K+L VD++  RISL +K +
Sbjct: 240  KVLSVDRDNNRISLSIKET 258



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PG V++G +  +  FGA V   GGV  L  +  +S   + KP    + G ++  +VL 
Sbjct: 185 LQPGQVLEGTIQRITDFGAFVDI-GGVDGLVHISQLSHQHVEKPSDVVEEGQKVNVKVLS 243

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V   + RI+++ K+TL      I     + +   +  G + +I  +G FV  ++GV+G  
Sbjct: 244 VDRDNNRISLSIKETLPGPWTNISEKAPKGS---VLEGTVKRIVSYGAFVEVFSGVEGLV 300

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S++       P  +   GQ V+ +++      +R++LS 
Sbjct: 301 HISQISHKHIGTPHEVLKEGQKVQVKVLDVNEEQQRLSLSI 341



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 22/342 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
           G  VKGKVI V+    +       +  + P+  +S   + K      VG EL   V+ V+
Sbjct: 16  GDKVKGKVIKVEEKHVLASVENSKLDGIIPISELSSLHVEKAEDVVTVGDELELEVIKVE 75

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
            + + ++ +K   +     L    E+ +  I    +  + K G  V    GV+GF P S 
Sbjct: 76  EEALILSKRKIDAEKAWDDLEKKFESGE--IFEAEVKDVVKGGLVVDL--GVRGFVPAS- 130

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED----DLVKLGS 671
           L  D   E  S Y  G+ +  +I+       R+ LS   +++  ++ +     + ++ G 
Sbjct: 131 LVEDHFVEDFSDYK-GKPLTFKIVELDKEKNRLILSHRAVVEEEKIRQKQSLLESLQPGQ 189

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVL 730
           ++ G +  +T     V +   G   G +    L+   +H      V++ G + + ++L +
Sbjct: 190 VLEGTIQRITDFGAFVDI---GGVDGLVHISQLSH--QHVEKPSDVVEEGQKVNVKVLSV 244

Query: 731 DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
           D +++ + LS K +L      +   A      SV+ G V  I+  G FV     + G   
Sbjct: 245 DRDNNRISLSIKETLPGPWTNISEKAP---KGSVLEGTVKRIVSYGAFVEVFSGVEGLVH 301

Query: 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            S+          +    GQ V+  +LDVN E  R++LS+K+
Sbjct: 302 ISQISHKHIGTPHEVLKEGQKVQVKVLDVNEEQQRLSLSIKE 343



 Score = 42.7 bits (99), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 144/367 (39%), Gaps = 63/367 (17%)

Query: 591 GWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVG-----QVVKCRIMSSI 644
           G + K+E+        N  + G  P SEL      +   +  VG     +V+K    + I
Sbjct: 21  GKVIKVEEKHVLASVENSKLDGIIPISELSSLHVEKAEDVVTVGDELELEVIKVEEEALI 80

Query: 645 PASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
            + R+I+          + DDL K    G +    V  V    +VV +  +G+    +P 
Sbjct: 81  LSKRKID-------AEKAWDDLEKKFESGEIFEAEVKDVVKGGLVVDLGVRGF----VPA 129

Query: 702 EHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSA-QQLPSDASHI 759
             + DH +E  +  K   KP   F +++ LD E + L+LS +  +     +Q  S    +
Sbjct: 130 SLVEDHFVEDFSDYKG--KP-LTF-KIVELDKEKNRLILSHRAVVEEEKIRQKQSLLESL 185

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
            P  V+ G +  I + G FV  +G + G    S+         S     GQ V   +L V
Sbjct: 186 QPGQVLEGTIQRITDFGAFVD-IGGVDGLVHISQLSHQHVEKPSDVVEEGQKVNVKVLSV 244

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  RI+LS+K++                             G      E    GSV+E
Sbjct: 245 DRDNNRISLSIKETLP---------------------------GPWTNISEKAPKGSVLE 277

Query: 880 GKVHESNDFGVVVSFEEHSDVYGF-----ITHHQLAGA--TVESGSVIQAAILDVAKAER 932
           G V     +G  V  E  S V G      I+H  +      ++ G  +Q  +LDV + ++
Sbjct: 278 GTVKRIVSYGAFV--EVFSGVEGLVHISQISHKHIGTPHEVLKEGQKVQVKVLDVNEEQQ 335

Query: 933 LVDLSLK 939
            + LS+K
Sbjct: 336 RLSLSIK 342


>gi|378718135|ref|YP_005283024.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans VH2]
 gi|375752838|gb|AFA73658.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans VH2]
          Length = 527

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 41   TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 100

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 101  SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 147

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 148  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 204

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 205  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 245

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 246  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 304

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ ++   + GL H
Sbjct: 305  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVDE-GIEGLVH 358

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 359  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 401



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 154/391 (39%), Gaps = 50/391 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 61  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 120

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 121 EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 180

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 181 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 232

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 233 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 291

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 292 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 327

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 922
               IG ++ GKV +   FG  V  +E   + G +   +LA   VE        G     
Sbjct: 328 ---AIGQIVPGKVTKLVPFGAFVRVDE--GIEGLVHISELAERHVEVPDQVVAVGDDAMV 382

Query: 923 AILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            ++D+    R + LSLK    D   E + ++
Sbjct: 383 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 413



 Score = 47.4 bits (111), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 72  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 131

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 132 KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 187

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 188 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 243

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 244 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 297

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 298 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 353

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 354 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 408

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 409 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 443



 Score = 41.2 bits (95), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 111/259 (42%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 174  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 233

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                       F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 234  V-------RSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 283

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 284  PSEVVTVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRQFAR 325

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +
Sbjct: 326  THAIG--QIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMVK 383

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK ++
Sbjct: 384  VIDIDLERRRISLSLKQAN 402


>gi|381397179|ref|ZP_09922592.1| RNA binding S1 domain protein [Microbacterium laevaniformans OR221]
 gi|380775496|gb|EIC08787.1| RNA binding S1 domain protein [Microbacterium laevaniformans OR221]
          Length = 483

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 171/373 (45%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  + G V K+D +  LL +       + ++   +    +P+E+        +G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEVEAL 91

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1278
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVEK------IKENDGVVTGSVIEVVKG--GLI 141

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V IG   +      EL+ +    P  G    Q ++ K+LE+ +      +V LS R+ L+
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG----QEIEAKILELDKNRN---NVVLSRRALLE 194

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
               S + +               + +L    + +G V ++ + G F+ L   +D  V +S
Sbjct: 195  QTQSESRTTF-------------LNNLHKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVS 240

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  ++E   +   +G+ V   +L V+   +RV ++LK +      +      +  H +
Sbjct: 241  ELSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKAT-----QEDPWQVFARTHAI 295

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +  G++ ++  +G F+ + +  + GL H+SELS  HV+  E +   GE+V VKI+ +D
Sbjct: 296  GQVAPGKVTKLVPFGAFVRVAD-GIEGLVHISELSGKHVELAEQVVSVGEEVFVKIIDID 354

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 355  LERRRISLSLKQA 367



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 172/387 (44%), Gaps = 36/387 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +++G V+ +D    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVEKIKE-NDGVVT-GSVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + L    + +   ++GQ ++ +I+      +++  SRR  L      +R +  + +  G
Sbjct: 154 LIELRRVRDLTP--YLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRTTFLNNLHKG 211

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
            +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   ++L
Sbjct: 212 QVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVEIL 265

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRLT 786
            +D +   + LS K     + Q+ P    +  H    V  G V  ++  G FVR    + 
Sbjct: 266 EVDLDRERVSLSLK-----ATQEDPWQVFARTHAIGQVAPGKVTKLVPFGAFVRVADGIE 320

Query: 787 GFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
           G    S+ + G+  +L+ +   VG+ V   I+D++ E  RI+LSLKQ    S D +  + 
Sbjct: 321 GLVHISE-LSGKHVELAEQVVSVGEEVFVKIIDIDLERRRISLSLKQ-ANESVDPNGTEF 378

Query: 846 HFLLEEKIAMLQSSKHNGSELKWVEGF 872
              L     M      NG E K+ EGF
Sbjct: 379 DPAL---YGMATEYDENG-EYKYPEGF 401


>gi|355574274|ref|ZP_09044117.1| hypothetical protein HMPREF1008_00094 [Olsenella sp. oral taxon 809
            str. F0356]
 gi|354818564|gb|EHF03053.1| hypothetical protein HMPREF1008_00094 [Olsenella sp. oral taxon 809
            str. F0356]
          Length = 390

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 178/380 (46%), Gaps = 53/380 (13%)

Query: 1159 CDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFH------I 1212
             D   G  VTG V K++++  LL I    K++  I      PS     ++  +      +
Sbjct: 29   TDFDEGDLVTGTVVKIEHDEVLLDIG--FKSEGVI------PSRELSIRKDINPEDVVAL 80

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKI 1270
            G  +   VL   KE K  RL+L       S K  +     + ++   + G+ V G + ++
Sbjct: 81   GDGIEALVL--QKEDKEGRLIL-------SKKRAEYERAWNRVEEKFNAGENVEGEVIEV 131

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
            + G  GL++ IG   +      +L+ +     L+ +  G  ++ +V+E+ R      +V 
Sbjct: 132  VKG--GLILDIGLRGFLPASLVDLRRV---KDLNAF-LGTRIEARVIEMDRN---RNNVV 182

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            LS R  L+       S++             +  L P M ++G V ++   G F+ L   
Sbjct: 183  LSRRVVLEEARKAERSEI-------------LSKLQPGMRLKGSVSSIVDFGAFVDLG-G 228

Query: 1391 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
            +D  + +S LS  +V  P +   +G+ V  +VL V+   +R+ + LK    +T       
Sbjct: 229  IDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK----QTTEDPWRT 284

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
             +    VG IV G + ++ ++G F+ + N  + GL H+SE+++ HVD    +   G+ V+
Sbjct: 285  LVKKYPVGAIVEGTVTKLVTFGAFVDLGN-GVEGLVHISEMAKQHVDAPAQVCAVGDTVQ 343

Query: 1511 VKILKVDKEKRRISLGMKSS 1530
            VK++++D ++RRISL MKS+
Sbjct: 344  VKVMEIDLDRRRISLSMKSA 363



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++PGM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +V
Sbjct: 202 SKLQPGMRLKGSVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQV 260

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI++  K+T       ++  Y       I  G +TK+   G FV   NGV+G
Sbjct: 261 LDVDLNRERISLGLKQTTEDPWRTLVKKYPVGA---IVEGTVTKLVTFGAFVDLGNGVEG 317

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+       P+ +  VG  V+ ++M      RRI+LS 
Sbjct: 318 LVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDRRRISLSM 360



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 147/369 (39%), Gaps = 58/369 (15%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE     +      +G  P  EL +     P  +  +G  ++  ++      
Sbjct: 36  LVTGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDINPEDVVALGDGIEALVLQKEDKE 95

Query: 648 RRINLS-----FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
            R+ LS     +     RV E      G  V G V  V    +++ +  +G+    +P  
Sbjct: 96  GRLILSKKRAEYERAWNRVEEK--FNAGENVEGEVIEVVKGGLILDIGLRGF----LPA- 148

Query: 703 HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 761
            L D L     + + +    E  +++ +D   +N++LS +  L  + +   S+  S + P
Sbjct: 149 SLVD-LRRVKDLNAFLGTRIEA-RVIEMDRNRNNVVLSRRVVLEEARKAERSEILSKLQP 206

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              + G V +I++ G FV  LG + G    S+         S+   VGQ V   +LDV+ 
Sbjct: 207 GMRLKGSVSSIVDFGAFVD-LGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDL 265

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKW---VEGFIIGSVI 878
              RI+L LKQ+                              +E  W   V+ + +G+++
Sbjct: 266 NRERISLGLKQT------------------------------TEDPWRTLVKKYPVGAIV 295

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAE 931
           EG V +   FG  V     + V G +   ++A   V++       G  +Q  ++++    
Sbjct: 296 EGTVTKLVTFGAFVDL--GNGVEGLVHISEMAKQHVDAPAQVCAVGDTVQVKVMEIDLDR 353

Query: 932 RLVDLSLKT 940
           R + LS+K+
Sbjct: 354 RRISLSMKS 362


>gi|379735729|ref|YP_005329235.1| 30S ribosomal protein S1 [Blastococcus saxobsidens DD2]
 gi|378783536|emb|CCG03204.1| 30S ribosomal protein S1 [Blastococcus saxobsidens DD2]
          Length = 495

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 189/405 (46%), Gaps = 56/405 (13%)

Query: 1140 IKPS---MLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH---- 1186
            ++PS    + +++IGS   F    D++I     G  V G + KVD +  LL I       
Sbjct: 6    VRPSSTPQVAINDIGSAEDFLAAIDLTIKYFNDGDIVEGVIVKVDRDEVLLDIGYKTEGV 65

Query: 1187 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
            + ++   +    +P+E+        +G  V   VL   KE K  RL+L   +        
Sbjct: 66   IPSRELSIKHDVDPNEV------VKVGDEVEALVL--QKEDKEGRLILSKKR-----AQY 112

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            + +   ++      ++V G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  ERAWGTIEAKKEADEVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGR 170

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
            +    ++ K++E+ +      +V LS R  L+   S   S+              +  L+
Sbjct: 171  E----LEAKIIELDKNRN---NVVLSRRQWLEQTQSEVRSEF-------------LNKLA 210

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
               +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+
Sbjct: 211  KGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVD 269

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGL 1485
               +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  + GL
Sbjct: 270  LDRERVSLSLKATQEDPWRQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGL 323

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             H+SEL+E HV+  E + + G+++ VK++ +D ++RRISL +K +
Sbjct: 324  VHISELAERHVEIPEQVVQVGDEILVKVIDIDLDRRRISLSLKQA 368



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 153/347 (44%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  EA D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEAKKEA-DEVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRQWLEQTQSEVRSEFLNKLA 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  +Q    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDLDRERVSLSLKATQEDPWRQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEILVKVIDIDLDRRRISLSLKQA 368



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 123/287 (42%), Gaps = 32/287 (11%)

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728
           G +V GV+  V  + V++ +   GY ++G IP+  L+  ++H      V+K G E + L+
Sbjct: 39  GDIVEGVIVKVDRDEVLLDI---GYKTEGVIPSRELS--IKHDVDPNEVVKVGDEVEALV 93

Query: 729 VL-DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           +  +++   L+LS K +    A    +  +    + VV G V  +++ G  +     L G
Sbjct: 94  LQKEDKEGRLILSKKRAQYERA--WGTIEAKKEADEVVTGTVIEVVKGGLILDI--GLRG 149

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF 847
           F P S     +  DL    YVG+ + + I++++     + LS +Q    +   S ++  F
Sbjct: 150 FLPASLVEMRRVRDLQP--YVGRELEAKIIELDKNRNNVVLSRRQWLEQTQ--SEVRSEF 205

Query: 848 LLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH 907
           L   K+A  Q      S +     F+    ++G VH S      +S++          H 
Sbjct: 206 L--NKLAKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSE-----LSWK----------HI 248

Query: 908 QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
                 VE G  +   +LDV      V LSLK    D +R+     Q
Sbjct: 249 DHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHQ 295


>gi|302533839|ref|ZP_07286181.1| ribosomal protein S1 [Streptomyces sp. C]
 gi|302442734|gb|EFL14550.1| ribosomal protein S1 [Streptomyces sp. C]
          Length = 504

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 185/401 (46%), Gaps = 55/401 (13%)

Query: 1142 PSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQL 1191
            P  + V++IG+   F    D +I     G  V G + KVD +  LL I       + ++ 
Sbjct: 12   PPQVAVNDIGNAEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRE 71

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +P+E+        +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 72   LSIKHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWG 118

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 119  TIEKIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE---- 172

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
            ++ K++E+ +      +V LS R+ L+   S    + L+T              L    +
Sbjct: 173  LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQV 215

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
              G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +
Sbjct: 216  RSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE 274

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
            RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   + GL H+S
Sbjct: 275  RVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-GIEGLVHIS 328

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            EL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 329  ELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 369



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 40  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 99

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 100 KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 155

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 156 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 211

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 212 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 265

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 266 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 322

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 323 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 372


>gi|359769917|ref|ZP_09273663.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans NBRC 16320]
 gi|359312720|dbj|GAB26496.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans NBRC 16320]
          Length = 527

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 41   TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 100

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 101  SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 147

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 148  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 204

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 205  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 245

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 246  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLD 304

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ ++   + GL H
Sbjct: 305  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVDE-GIEGLVH 358

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 359  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 401



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 153/389 (39%), Gaps = 46/389 (11%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 61  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 120

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 121 EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 180

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 181 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 232

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 233 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 291

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 292 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 327

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 924
               IG ++ GKV +   FG  V  +E  +    I+     H ++    V  G      +
Sbjct: 328 ---AIGQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKV 384

Query: 925 LDVAKAERLVDLSLKTVFIDRFREANSNR 953
           +D+    R + LSLK    D   E + ++
Sbjct: 385 IDIDLERRRISLSLKQANEDYTEEFDPSK 413



 Score = 47.4 bits (111), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 72  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 131

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 132 KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 187

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 188 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 243

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 244 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 297

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 298 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 353

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 354 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 408

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 409 --FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 443



 Score = 41.2 bits (95), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 111/259 (42%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 174  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 233

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                       F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 234  V-------RSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 283

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 284  PSEVVTVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRQFAR 325

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +
Sbjct: 326  THAIG--QIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMVK 383

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK ++
Sbjct: 384  VIDIDLERRRISLSLKQAN 402


>gi|308231891|ref|ZP_07414153.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001]
 gi|308369488|ref|ZP_07417965.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002]
 gi|308375631|ref|ZP_07444575.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007]
 gi|308376775|ref|ZP_07439993.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008]
 gi|308377781|ref|ZP_07480385.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009]
 gi|308378993|ref|ZP_07484583.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010]
 gi|308380132|ref|ZP_07488808.2| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011]
 gi|308215731|gb|EFO75130.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu001]
 gi|308327429|gb|EFP16280.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu002]
 gi|308345717|gb|EFP34568.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu007]
 gi|308350016|gb|EFP38867.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu008]
 gi|308354653|gb|EFP43504.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu009]
 gi|308358609|gb|EFP47460.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu010]
 gi|308362535|gb|EFP51386.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu011]
          Length = 392

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 127/257 (49%), Gaps = 28/257 (10%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL++ IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R
Sbjct: 47   GGLILDIGLRGFLPASLVEMRRVRDLQPYIGKE----IEAKIIELDKNRN---NVVLSRR 99

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + L+   S   S+              + +L    I +G V ++ + G F+ L   +D  
Sbjct: 100  AWLEQTQSEVRSEF-------------LNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGL 145

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +    + + 
Sbjct: 146  VHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFAR 200

Query: 1455 LH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+   VK+
Sbjct: 201  THAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKV 259

Query: 1514 LKVDKEKRRISLGMKSS 1530
            + +D E+RRISL +K +
Sbjct: 260  IDIDLERRRISLSLKQA 276



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   V
Sbjct: 115 NNLQKGTIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEV 173

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +R++++ K T          ++A      I  G +TK+   G FVR   G++G
Sbjct: 174 LDVDMDRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEG 230

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL       P  +  VG     +++      RRI+LS 
Sbjct: 231 LVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSL 273



 Score = 46.2 bits (108), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 49   LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 108

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
                  +N+Q    +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 109  VRSEFLNNLQ----KGTIRKGVVSSIVNF--GAFVDLGG-VDGLVHVSELSWKHIDHPSE 161

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 162  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 203

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 204  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 261

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 262  IDLERRRISLSLKQAN 277


>gi|444433042|ref|ZP_21228188.1| 30S ribosomal protein S1 [Gordonia soli NBRC 108243]
 gi|443886106|dbj|GAC69909.1| 30S ribosomal protein S1 [Gordonia soli NBRC 108243]
          Length = 493

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 183/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS   F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 12   VAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 71

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+       ++G  V   VL+  KE K  RL+L   +        + +   ++
Sbjct: 72   KHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYERAWGTIE 118

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 119  QLKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE----IEA 172

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 173  KIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGV 216

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 217  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSL 275

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E
Sbjct: 276  SLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAE 329

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 330  RHVEVPDQVVSVGDDALVKVIDIDLERRRISLSLKQA 366



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 147/375 (39%), Gaps = 46/375 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 26  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 85

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + + L +    V G V  V    +++ +  
Sbjct: 86  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEQLKEKDEAVKGTVIEVVKGGLILDIGL 145

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 146 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 197

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 198 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 256

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 257 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 292

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 924
               IG ++ GKV +   FG  V  EE  +    I+     H ++    V  G      +
Sbjct: 293 ---AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDALVKV 349

Query: 925 LDVAKAERLVDLSLK 939
           +D+    R + LSLK
Sbjct: 350 IDIDLERRRISLSLK 364



 Score = 47.8 bits (112), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 37  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 96

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 97  KEGRLILSKKRAQYERAWGTIEQLKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 152

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 153 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 208

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 209 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 262

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 263 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 318

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 319 EGLVHISELAERHVEVPDQVVSVGDDALVKVIDIDLERRRISLSLKQANEDYT------E 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 373 EF-DPSKYGMADSYDEQGNYIFPEGFDADTNEWLEGF 408


>gi|418036541|ref|ZP_12674957.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
            subsp. bulgaricus CNCM I-1519]
 gi|354687591|gb|EHE87671.1| hypothetical protein LDBUL1519_01657 [Lactobacillus delbrueckii
            subsp. bulgaricus CNCM I-1519]
          Length = 401

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 135/280 (48%), Gaps = 32/280 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            D +Q    EG  + G+++  + G  GL+V +G    G +  + + N  VSD L  Y  G+
Sbjct: 102  DKLQKDFEEGKTIEGKVTSSVRG--GLLVDVGTR--GFLPASLISNRFVSD-LKPY-IGK 155

Query: 1311 FVKCKVLEISRTVRGTF--HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
             +K K+ EI          H EL          +  S  +  DV                
Sbjct: 156  TIKVKITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDV---------------- 199

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
              V+G V  +T  G F+ +   +D  V +S +S  +V+ P     +G+ V  +V+ ++  
Sbjct: 200  --VEGRVSRLTDFGSFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDND 256

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
              R+ +++K ++     Q+     S+L+ GD++ G++K + ++G F+ + +  + GL HV
Sbjct: 257  RHRISLSIKQTEPSPFEQA----TSSLNEGDVIEGEVKSLTNFGAFVEVAD-GIQGLVHV 311

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            SE++  HVD    +   G KVKVK+L +D  KRRISL +K
Sbjct: 312  SEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIK 351



 Score = 70.9 bits (172), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 20/249 (8%)

Query: 413 QSKVVRVDRGLGLLLDIPST---PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILG 469
           + KV    RG GLL+D+ +    P S  +   +SD+     + ++ K  E    + R++ 
Sbjct: 115 EGKVTSSVRG-GLLVDVGTRGFLPASLISNRFVSDLKPYIGKTIKVKITEIDPAKNRLI- 172

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
             H E +     +  AFE +    S +  G VV+G+V  +  FG+ V   GGV  L  + 
Sbjct: 173 LSHKELIEE--EREQAFENVA---SQLVVGDVVEGRVSRLTDFGSFVDI-GGVDGLVHIS 226

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL-- 587
            +S   + KP    KVG ++  +V+G+ + R    H+ +L   K    S + +AT  L  
Sbjct: 227 EISYKHVDKPSDVLKVGQDVKVKVIGIDNDR----HRISL-SIKQTEPSPFEQATSSLNE 281

Query: 588 --ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIP 645
             +  G +  +   G FV   +G+QG    SE+      +PS +  VG  VK ++++  P
Sbjct: 282 GDVIEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDP 341

Query: 646 ASRRINLSF 654
           + RRI+LS 
Sbjct: 342 SKRRISLSI 350



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 92/197 (46%), Gaps = 23/197 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            +N+ + +  GD+V GR+S++     G  V IG  + G VH +E+    V  P      GQ
Sbjct: 188  ENVASQLVVGDVVEGRVSRLTDF--GSFVDIG-GVDGLVHISEISYKHVDKPSDVLKVGQ 244

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
             VK KV+ I         + LS++ +                  P    +    L+   +
Sbjct: 245  DVKVKVIGIDND---RHRISLSIKQT-----------------EPSPFEQATSSLNEGDV 284

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
            ++G VK++T+ G F+ ++  +   V +S ++  +V+ P     +G  V  +VL+++P  +
Sbjct: 285  IEGEVKSLTNFGAFVEVADGIQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKR 344

Query: 1431 RVEVTLKTSDSRTASQS 1447
            R+ +++K  D   AS S
Sbjct: 345  RISLSIKQVDPENASSS 361



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 142/365 (38%), Gaps = 53/365 (14%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R +   D          +G   K  ++      +  N  F    TRV E    
Sbjct: 43  GVEGVITRRDFTNDRSVNLRDEVKLGDTFKVYVVRRAGGDKE-NGEFFFSVTRVKEREAY 101

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G  + G V       ++V V  +G+   ++ +      L+    +   IK 
Sbjct: 102 DKLQKDFEEGKTIEGKVTSSVRGGLLVDVGTRGFLPASLISNRFVSDLK--PYIGKTIKV 159

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQ-LPSDASHIHPNSVVHGYVCNIIETGCFV 779
                ++  +D   + L+LS K  +    +Q   + AS +    VV G V  + + G FV
Sbjct: 160 -----KITEIDPAKNRLILSHKELIEEEREQAFENVASQLVVGDVVEGRVSRLTDFGSFV 214

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
             +G + G    S+         S    VGQ V+  ++ ++++  RI+LS+KQ+  S   
Sbjct: 215 D-IGGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPS--- 270

Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
             F Q    L E                       G VIEG+V    +FG  V  E    
Sbjct: 271 -PFEQATSSLNE-----------------------GDVIEGEVKSLTNFGAFV--EVADG 304

Query: 900 VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
           + G +   ++A   V+        G  ++  +L++  ++R + LS+K V  +    +N  
Sbjct: 305 IQGLVHVSEIAYKHVDKPSDVLTVGPKVKVKVLNIDPSKRRISLSIKQVDPENASSSNDR 364

Query: 953 RQAQK 957
            +A++
Sbjct: 365 PRARR 369


>gi|374612566|ref|ZP_09685343.1| RNA binding S1 domain protein [Mycobacterium tusciae JS617]
 gi|373547477|gb|EHP74202.1| RNA binding S1 domain protein [Mycobacterium tusciae JS617]
          Length = 515

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            S+    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 38   SVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 97

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 98   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 144

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 145  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 201

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 202  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 242

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             I +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 243  AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 301

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 302  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 355

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SELSE HV+  + + +  +   VK++ +D E+RRISL +K +
Sbjct: 356  ISELSERHVEVPDQVVQVNDDAMVKVIDIDLERRRISLSLKQA 398



 Score = 48.1 bits (113), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 152/382 (39%), Gaps = 50/382 (13%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  +++ 
Sbjct: 67  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTK 126

Query: 644 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 127 EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 185

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 186 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 238

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +   ++  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 239 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 297

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 298 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 330

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-SGSVIQ------AAILDVAKAE 931
            GKV +   FG  V  EE   + G +   +L+   VE    V+Q        ++D+    
Sbjct: 331 PGKVTKLVPFGAFVRVEE--GIEGLVHISELSERHVEVPDQVVQVNDDAMVKVIDIDLER 388

Query: 932 RLVDLSLKTVFIDRFREANSNR 953
           R + LSLK    D   E + ++
Sbjct: 389 RRISLSLKQANEDYTEEFDPSK 410



 Score = 45.1 bits (105), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 69  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 128

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 129 KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 184

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 185 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 240

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 241 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 294

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 295 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 350

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   V       ++D++ E  RI+LSLKQ+    T+      
Sbjct: 351 EGLVHISELSERHVEVPDQVVQVNDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 405

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 406 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 440



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 113/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R +   +   
Sbjct: 171  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAW---LEQT 227

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +   + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 228  QSEVRSEFLNQ-LQKGAIRKGVVSSIVNF--GAFVDLGG-VDGLVHVSELSWKHIDHPSE 283

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 284  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 325

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S LS+ +VE P++   +      +V+ 
Sbjct: 326  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVNDDAMVKVID 383

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 384  IDLERRRISLSLKQAN 399


>gi|312139898|ref|YP_004007234.1| 30S ribosomal protein s1 rpsa [Rhodococcus equi 103S]
 gi|311889237|emb|CBH48551.1| 30S ribosomal protein S1 RpsA [Rhodococcus equi 103S]
          Length = 490

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 184/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVGVGDDALVKVIDIDLERRRISLSLKQA 365



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 NEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 922
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVGVGDDALV 346

Query: 923 AILDVAKAERLVDLSLK 939
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 47.0 bits (110), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGNEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ      +A F   
Sbjct: 318 EGLVHISELAERHVEVPDQVVGVGDDALVKVIDIDLERRRISLSLKQ-ANEDYNAEFDP- 375

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 376 -----SKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 407


>gi|441520462|ref|ZP_21002129.1| 30S ribosomal protein S1 [Gordonia sihwensis NBRC 108236]
 gi|441459908|dbj|GAC60090.1| 30S ribosomal protein S1 [Gordonia sihwensis NBRC 108236]
          Length = 489

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 184/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGSAEDFLAAVDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VTVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               V+ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---VEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D ++RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQA 365



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 152/389 (39%), Gaps = 46/389 (11%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AVDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  + +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLNQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 924
               IG ++ GKV +   FG  V  EE  +    I+     H ++    V  G      +
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKV 348

Query: 925 LDVAKAERLVDLSLKTVFIDRFREANSNR 953
           +D+    R + LSLK    D   E + ++
Sbjct: 349 IDIDLDRRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.8 bits (112), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 149/354 (42%), Gaps = 31/354 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ V+ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            G    S+  +       +   VG      ++D++ +  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQANEDYTE 371


>gi|395237266|ref|ZP_10415353.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
 gi|423350857|ref|ZP_17328509.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
 gi|394487499|emb|CCI83441.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
 gi|404387158|gb|EJZ82283.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
          Length = 481

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 184/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS   F    D +I     G  V G V K+D++  LL I       + ++   +
Sbjct: 9    VAVNDIGSAEDFLAAVDETIKYFNDGDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+ E      +G  V   VL+  KE K  RL+L   +        DI     +
Sbjct: 69   KHDVDPDEVVE------LGDEVDALVLT--KEDKDGRLILSKKRAQYERAWGDI-----E 115

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                  + V G + +++ G  GL++ IG   +      E++ +   +P  G +    ++ 
Sbjct: 116  RLKENDEPVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLEPYIGAE----LEA 169

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L    + +G 
Sbjct: 170  KIIELDKHRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKGQVRKGV 213

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV +
Sbjct: 214  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVNVGDEVTVEVLDVDLDRERVSL 272

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      +      +  H VG IV G++ ++  +G F+ + +  + GL H+SEL++
Sbjct: 273  SLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGSFVRV-DEGIEGLVHISELAQ 326

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HVD  + I   GE++ VK++ +D E+RRISL +K +
Sbjct: 327  RHVDVPDQIVTVGEELMVKVIDIDLERRRISLSLKQA 363



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVNVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGSFVRVDEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  +  VG+ +  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVDVPDQIVTVGEELMVKVIDIDLERRRISLSL 360



 Score = 46.2 bits (108), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 164/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ +D    ++      + + P   +S    V P +  ++G E+   VL  + 
Sbjct: 34  GDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVELGDEVDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KDGRLILSKKRAQYERAWGDIERLKE-NDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      EP    ++G  ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGAELEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVNVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGSFVRVDEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+          +   VG+ +   ++D++ E  RI+LSLKQ+     D  F +
Sbjct: 315 IEGLVHISELAQRHVDVPDQIVTVGEELMVKVIDIDLERRRISLSLKQA-----DDDFTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W+EG+
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGY 405


>gi|326382653|ref|ZP_08204344.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
 gi|326198772|gb|EGD55955.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
          Length = 490

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 184/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGSAEDFLAAVDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VTVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               V+ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---VEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D ++RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQA 365



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 152/389 (39%), Gaps = 46/389 (11%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           A+ S+     D  I  G I K+++    +      +G  P  EL +    +P+ +  VG 
Sbjct: 25  AVDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  + +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLNQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVTVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 924
               IG ++ GKV +   FG  V  EE  +    I+     H ++    V  G      +
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKV 348

Query: 925 LDVAKAERLVDLSLKTVFIDRFREANSNR 953
           +D+    R + LSLK    D   E + ++
Sbjct: 349 IDIDLDRRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.8 bits (112), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 149/354 (42%), Gaps = 31/354 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVTVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ V+ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            G    S+  +       +   VG      ++D++ +  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVGDDAMVKVIDIDLDRRRISLSLKQANEDYTE 371


>gi|228996709|ref|ZP_04156346.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
 gi|228763028|gb|EEM11938.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
          Length = 382

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 177/381 (46%), Gaps = 51/381 (13%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            + +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA     
Sbjct: 15   LQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKASDVVK 63

Query: 1221 LSINKEKKLLRLVLRPFQDG---ISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVG 1275
            L  N E K+++L     +D    +S + VD       +Q     G++    +  I++G  
Sbjct: 64   LDQNLELKVIKL-----EDDDLVLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNG-- 116

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            GLVV +G   +      E+  +   +  + Y +G+ +  K++E+ R       V LS ++
Sbjct: 117  GLVVDLGVRGFIPASLVEMYYV---EDFTDY-KGKTLAVKIVELDRE---KNRVILSHKA 169

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
             ++              +   K  E I  L    +V+G V+ +T  G F+ +   +D  V
Sbjct: 170  VVEQ-------------ELESKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-DVDGLV 215

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS-N 1454
             +S +S   VE P      G+ V  +VLSV+  ++R+ +++K      A      N+S  
Sbjct: 216  HISQISHDRVEQPSDVLTQGQSVKVKVLSVDADTQRISLSIKA-----AQPGPWENVSAE 270

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
            +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK+L
Sbjct: 271  VKAGDIREGIVKRIVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVL 329

Query: 1515 KVDKEKRRISLGMKSSYFKND 1535
            +V   ++RISL +K +  +N+
Sbjct: 330  EVHAAEKRISLSIKEAVEENN 350



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   G V  L  +  +S   + +P      G  +  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GDVDGLVHISQISHDRVEQPSDVLTQGQSVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          +S+  +A D  I  G + +I   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVSAEVKAGD--IREGIVKRIVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++       P+ +  +GQ VK +++    A +RI+LS 
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSI 342



 Score = 44.7 bits (104), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 157/390 (40%), Gaps = 50/390 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV G V  V+    +V        + P+  ++   I K     K+   L  +V+ ++ 
Sbjct: 18  GDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVKLDQNLELKVIKLED 77

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
             + ++  K  V ++ A +    + T   +    +  I   G  V    GV+GF P S +
Sbjct: 78  DDLVLS--KRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDL--GVRGFIPASLV 133

Query: 619 GLDPGCEPSSMYHV-------GQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----- 666
                     MY+V       G+ +  +I+       R+ LS       V E +L     
Sbjct: 134 ---------EMYYVEDFTDYKGKTLAVKIVELDREKNRVILSH----KAVVEQELESKKK 180

Query: 667 -----VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKP 720
                +K G +V G V  +T     V V   G   G +    ++ D +E  +    V+  
Sbjct: 181 EAISSLKEGDVVEGTVQRLTDFGAFVNV---GDVDGLVHISQISHDRVEQPS---DVLTQ 234

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGC 777
           G     ++L +D ++  + LS     I +AQ  P +  ++ +    +  G V  I+  G 
Sbjct: 235 GQSVKVKVLSVDADTQRISLS-----IKAAQPGPWENVSAEVKAGDIREGIVKRIVTFGA 289

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           FV  L  + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++   +
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAVEEN 349

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELK 867
            +     ++    E  A  Q S   G +LK
Sbjct: 350 NETEDYSQYEPTSES-ATFQFSDIIGEQLK 378



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 120/291 (41%), Gaps = 64/291 (21%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGY-SKGTIPTEHLAD-HLEHATVMKSVIKPGYEF 724
           +++G +V+G V  V    V+V V   GY + G IP   LA+ H+E A+    V+K     
Sbjct: 15  LQVGDVVTGSVTKVEEKQVLVNV---GYKTDGVIPISELANVHIEKAS---DVVKLDQNL 68

Query: 725 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            +L V+  E  +L+LS +   +++ +             V    V +I+  G  V    R
Sbjct: 69  -ELKVIKLEDDDLVLSKRA--VDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDLGVR 125

Query: 785 LTGFAPRSKAVDGQRADLSKTYYV-------GQSVRSNILDVNSETGRITLSLKQSCCSS 837
             GF P         A L + YYV       G+++   I++++ E  R+ LS K      
Sbjct: 126 --GFIP---------ASLVEMYYVEDFTDYKGKTLAVKIVELDREKNRVILSHK------ 168

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNG-SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
             A   QE          L+S K    S LK       G V+EG V    DFG  V+   
Sbjct: 169 --AVVEQE----------LESKKKEAISSLKE------GDVVEGTVQRLTDFGAFVNV-- 208

Query: 897 HSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKT 940
             DV G +   Q++   VE        G  ++  +L V    + + LS+K 
Sbjct: 209 -GDVDGLVHISQISHDRVEQPSDVLTQGQSVKVKVLSVDADTQRISLSIKA 258


>gi|262202770|ref|YP_003273978.1| RNA-binding S1 domain-containing protein [Gordonia bronchialis DSM
            43247]
 gi|262086117|gb|ACY22085.1| RNA binding S1 domain protein [Gordonia bronchialis DSM 43247]
          Length = 487

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ ++   + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVDE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 155/391 (39%), Gaps = 50/391 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI S+     D  I  G I K+++    +      +G  P  EL +    +P+ + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQA 922
               IG ++ GKV +   FG  V  +E   + G +   +LA   VE        G     
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELAERHVEVPDQVVAVGDDAMV 346

Query: 923 AILDVAKAERLVDLSLKTVFIDRFREANSNR 953
            ++D+    R + LSLK    D   E + ++
Sbjct: 347 KVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 161/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T      E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            F    K  M  S    G+ +          +W+EGF
Sbjct: 372 EF-DPSKYGMADSYDEQGNYIFPEGFDADTNEWLEGF 407



 Score = 40.8 bits (94), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 112/259 (43%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +     
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----- 192

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                 ++    F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 193  --QTQSEVRSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 247

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 248  PSEVVAVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRQFAR 289

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +
Sbjct: 290  THAI--GQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMVK 347

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK ++
Sbjct: 348  VIDIDLERRRISLSLKQAN 366


>gi|403746310|ref|ZP_10954843.1| RNA binding S1 domain-containing protein [Alicyclobacillus hesperidum
            URH17-3-68]
 gi|403120641|gb|EJY54995.1| RNA binding S1 domain-containing protein [Alicyclobacillus hesperidum
            URH17-3-68]
          Length = 393

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 170/378 (44%), Gaps = 45/378 (11%)

Query: 1155 LFEECDVSIGQRVTGYVYKVDNEWALLTISR----HLKAQLFILDSAYEPSELQEFQRRF 1210
            +  +  V  G  VTG V  VD     + +S     H+  Q         P+E+       
Sbjct: 15   MLTDAAVREGDVVTGEVTAVDENGVTVALSHGFEGHIAPQELSAVPGTNPTEVTS----- 69

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
             +G  +T  V+ ++ E   + L  R  +   +        + MQ  +  G+ +   I  +
Sbjct: 70   -VGSQITAVVVKVDMESGQVTLSKRRAEQASA-------WNRMQELLASGEPIEVEIRDV 121

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
            + G  GLV  +G   +      + + +   D      +G+ ++ KV+E+           
Sbjct: 122  VKG--GLVADVGVRAFIPASLVDRRFVENLDEF----KGKTLRAKVVEVDPEKNKLI--- 172

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            LS R+ L+  +   +  L             +E+L P  +++G V+ +T  G F+ +   
Sbjct: 173  LSRRALLEEETEAKAKAL-------------MEELKPGDVIEGTVQRLTDFGAFVDIG-G 218

Query: 1391 LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
             D  V +S LS  +V  P +    G  V  RVL V+P + R+ +++K +      +    
Sbjct: 219  ADGLVHISELSFSHVNHPSEVVHEGDRVKVRVLRVDPEAGRISLSIKAALPEPWEE---- 274

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
            + ++   GD+V G +KRV  +G F+ ++   L GL HVS++S +HV +   + + G++V 
Sbjct: 275  HANDYQPGDVVQGVVKRVVDFGAFVELQ-PGLEGLVHVSQISNEHVAHASDVLQPGQEVT 333

Query: 1511 VKILKVDKEKRRISLGMK 1528
            V++L VD E+RRISL M+
Sbjct: 334  VRVLSVDPERRRISLSMR 351



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 124/280 (44%), Gaps = 39/280 (13%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            + EGD+V G ++ +     G+ V +     G +   EL  +  ++P      G  +   V
Sbjct: 21   VREGDVVTGEVTAVDEN--GVTVALSHGFEGHIAPQELSAVPGTNPTEVTSVGSQITAVV 78

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            +++      +  V LS R +    +     +L           E IE    +++  G V 
Sbjct: 79   VKVDME---SGQVTLSKRRAEQASAWNRMQELLASG-------EPIEVEIRDVVKGGLVA 128

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP------LSK 1430
            +V   G    +   L  +  + NL          EF  GK +  +V+ V+P      LS+
Sbjct: 129  DV---GVRAFIPASLVDRRFVENLD---------EFK-GKTLRAKVVEVDPEKNKLILSR 175

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            R  +  +T     A   E      L  GD++ G ++R+  +G F+ I   +  GL H+SE
Sbjct: 176  RALLEEETEAKAKALMEE------LKPGDVIEGTVQRLTDFGAFVDIGGAD--GLVHISE 227

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            LS  HV++   +   G++VKV++L+VD E  RISL +K++
Sbjct: 228  LSFSHVNHPSEVVHEGDRVKVRVLRVDPEAGRISLSIKAA 267



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 149/363 (41%), Gaps = 31/363 (8%)

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           + T + V+ G VV G+V AVD  G  V    G +       +S      P +   VG+++
Sbjct: 15  MLTDAAVREGDVVTGEVTAVDENGVTVALSHGFEGHIAPQELSAVPGTNPTEVTSVGSQI 74

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE-----KHGCFVR 604
              V+ V  +   VT  K     + A  +S       L+  G   ++E     K G    
Sbjct: 75  TAVVVKVDMESGQVTLSK-----RRAEQASAWNRMQELLASGEPIEVEIRDVVKGGLVAD 129

Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRV 661
              GV+ F P S +  D     +     G+ ++ +++   P   ++ LS    + + T  
Sbjct: 130 V--GVRAFIPASLV--DRRFVENLDEFKGKTLRAKVVEVDPEKNKLILSRRALLEEETEA 185

Query: 662 SEDDLV---KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSV 717
               L+   K G ++ G V  +T     V +   G + G +    L+  H+ H +    V
Sbjct: 186 KAKALMEELKPGDVIEGTVQRLTDFGAFVDI---GGADGLVHISELSFSHVNHPS---EV 239

Query: 718 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
           +  G     ++L +D E+  + LS K +L    ++  +D     P  VV G V  +++ G
Sbjct: 240 VHEGDRVKVRVLRVDPEAGRISLSIKAALPEPWEEHAND---YQPGDVVQGVVKRVVDFG 296

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
            FV     L G    S+  +   A  S     GQ V   +L V+ E  RI+LS+++   S
Sbjct: 297 AFVELQPGLEGLVHVSQISNEHVAHASDVLQPGQEVTVRVLSVDPERRRISLSMREPGPS 356

Query: 837 STD 839
            ++
Sbjct: 357 RSE 359



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 145/356 (40%), Gaps = 40/356 (11%)

Query: 221 LYKGLSLETVQEGMVLTAYVKSIED--------HGYILHFGLPSFTGFLPRNNLAENSGI 272
           L + L+   V+EG V+T  V ++++        HG+  H   P     +P  N  E + +
Sbjct: 12  LREMLTDAAVREGDVVTGEVTAVDENGVTVALSHGFEGHIA-PQELSAVPGTNPTEVTSV 70

Query: 273 DVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSI 332
               G  +  VV  +D     V LS      +    +       +LL  G  +   ++ +
Sbjct: 71  ----GSQITAVVVKVDMESGQVTLSKRRAEQASAWNR-----MQELLASGEPIEVEIRDV 121

Query: 333 LENGVM--LSFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGL 389
           ++ G++  +    +   + VD   ++N         D  + K + A+++ VDP    + L
Sbjct: 122 VKGGLVADVGVRAFIPASLVDRRFVENL--------DEFKGKTLRAKVVEVDPEKNKLIL 173

Query: 390 TLNPYLLHN-----RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISD 444
           +    L        +A    +K GD+ + +     D   G  +DI          V IS+
Sbjct: 174 SRRALLEEETEAKAKALMEELKPGDVIEGTVQRLTD--FGAFVDIGGAD----GLVHISE 227

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
           ++   V    +   EG  V+VR+L      G  +  +KA+  E      +D +PG VV+G
Sbjct: 228 LSFSHVNHPSEVVHEGDRVKVRVLRVDPEAGRISLSIKAALPEPWEEHANDYQPGDVVQG 287

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
            V  V  FGA V+   G++ L  +  +S   +       + G E+  RVL V  +R
Sbjct: 288 VVKRVVDFGAFVELQPGLEGLVHVSQISNEHVAHASDVLQPGQEVTVRVLSVDPER 343


>gi|425737299|ref|ZP_18855572.1| 30S ribosomal protein S1 [Staphylococcus massiliensis S46]
 gi|425482647|gb|EKU49803.1| 30S ribosomal protein S1 [Staphylococcus massiliensis S46]
          Length = 393

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 16/204 (7%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +++G V  +T+ G FI L   +D  V +S LS  +V++P++   IG+ V  +V SVE  S
Sbjct: 196  VLEGKVARLTNFGAFIDLG-GVDGLVHVSELSHEHVKTPDEVVEIGQTVNVKVRSVEKDS 254

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
            +R+ +++K  D+  +    I      + GD+V G++ R+ ++G F+ I    L GL H+S
Sbjct: 255  ERISLSIK--DTLPSPFETIK--EKFNEGDVVEGKVMRLANFGAFVEI-GAGLQGLVHIS 309

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1549
            E+S  H+     +   G+ V VKIL +D+E+ RISL +K++  K +++        ESDE
Sbjct: 310  EISHKHIGTPNEVLEPGDTVNVKILGIDQEEERISLSIKATEEKEESN--------ESDE 361

Query: 1550 AIEEVGSYNRSSLLENSSVAVQDM 1573
              E   SY  S      +  + DM
Sbjct: 362  --ETTQSYTTSQDSNEDNPTIGDM 383



 Score = 60.8 bits (146), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 113/251 (45%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLD------IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           ++KV  V +G GL++D      IP++ +ST     I D ++ + + LE K +E      R
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFIPASLISTDY---IEDFSDYDGKVLELKVEELDPENNR 167

Query: 467 -ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E +     K    +        ++ G V++GKV  + +FGA +   GGV  L
Sbjct: 168 VILSRKAVEAIENEKKKEQLLDS-------IQAGDVLEGKVARLTNFGAFIDL-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +  ++G  +  +V  V+  S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVKTPDEVVEIGQTVNVKVRSVEKDSERISLSIKDTLPSPFETIKEKFNEG 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV    G+QG    SE+       P+ +   G  V  +I+  
Sbjct: 280 D---VVEGKVMRLANFGAFVEIGAGLQGLVHISEISHKHIGTPNEVLEPGDTVNVKILGI 336

Query: 644 IPASRRINLSF 654
                RI+LS 
Sbjct: 337 DQEEERISLSI 347



 Score = 41.6 bits (96), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 82/169 (48%), Gaps = 14/169 (8%)

Query: 405 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 464
           ++ GD+  + KV R+    G  +D+          V +S+++ E V+  ++  + G  V 
Sbjct: 191 IQAGDVL-EGKVARL-TNFGAFIDLGGVD----GLVHVSELSHEHVKTPDEVVEIGQTVN 244

Query: 465 VRILGF-RHLEGLATGILKA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 521
           V++    +  E ++  I     S FE +         G VV+GKV+ + +FGA V+   G
Sbjct: 245 VKVRSVEKDSERISLSIKDTLPSPFETI---KEKFNEGDVVEGKVMRLANFGAFVEIGAG 301

Query: 522 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKT 568
           ++ L  +  +S   I  P +  + G  +  ++LG+  + +RI+++ K T
Sbjct: 302 LQGLVHISEISHKHIGTPNEVLEPGDTVNVKILGIDQEEERISLSIKAT 350


>gi|170289126|ref|YP_001739364.1| RNA-binding S1 domain-containing protein [Thermotoga sp. RQ2]
 gi|170176629|gb|ACB09681.1| RNA binding S1 domain protein [Thermotoga sp. RQ2]
          Length = 543

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 116/520 (22%), Positives = 217/520 (41%), Gaps = 57/520 (10%)

Query: 456 KYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515
           +YK G  + ++IL   + E       +    + L     D +    VK +V++    G  
Sbjct: 60  EYKVGENLTLQILNLNYEERSILSERRPVLRKTLEELRKDYEEKKPVKARVVSQTKGGYN 119

Query: 516 VQFPGGVKALCPLPH-MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL 574
           V   G V A  P  H +       P K+ +V   ++  ++  K     V  ++ L   K+
Sbjct: 120 VLLKGVVSAFLPGSHSLLRRNDPIPEKEIEV---IILEMVQTKRGPRIVVSRRALQDKKI 176

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
               S  +  D  I  G +  I   G  V    GV+GF PRSEL  D    P  +   GQ
Sbjct: 177 EEFFSEKKVGD--IVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTRISPEDIVKPGQ 234

Query: 635 VVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            +  +I+      + + LS    M  P    E+    +G +V+G  +V++ +    +V  
Sbjct: 235 NITAKIIELDKEKKNVILSLKRLMPDPWEKVEEKY-PVGKVVNG--EVISIHPFGFFVRL 291

Query: 692 KGYSKGTIPTEHL-----ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 746
           +   +G +P   +        LE       ++K      +++ +D E+  L LS K +  
Sbjct: 292 EPGVEGLVPRSEVFWGNTRKSLEEVVSAGDLVKV-----EVINVDKENRKLTLSYKKAKG 346

Query: 747 NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
           +  + +       + N+VV G V  II+ G FV     + GF P S+    +  +  +  
Sbjct: 347 DPWENI---EDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEIL 403

Query: 807 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 866
            +G+ V+  IL ++ E  +ITLS+K++  +  + +  +           L++        
Sbjct: 404 KIGEKVKVKILKIDKENRKITLSIKRTQENPWERALKE-----------LETD------- 445

Query: 867 KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILD 926
                    S++ G + +  + GVVV  EE+ D+ GF+ ++ L  +  E+G V+   +L 
Sbjct: 446 ---------SIVSGTIKKIVNSGVVVEVEEY-DLEGFVPNNHLL-SEPETGKVLNLVVLR 494

Query: 927 VAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASK 966
           +   E    L  + +  ++  E   N +  KK  ++E+S+
Sbjct: 495 IDPDEV---LGGRMILSEKRYEERKNIEEYKKMVEKESSQ 531



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 33/288 (11%)

Query: 1248 ISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            + +  ++ F  E   GDIV G +  I +   G+ V+I   + G +  +EL       P  
Sbjct: 171  LQDKKIEEFFSEKKVGDIVEGTVKGISNA--GVEVEISEGVRGFIPRSELSYDTRISPED 228

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                GQ +  K++E+ +  +   +V LSL+             L  D        EK+E+
Sbjct: 229  IVKPGQNITAKIIELDKEKK---NVILSLKR------------LMPD------PWEKVEE 267

Query: 1365 LSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRV 1422
              P   +V G V ++   G F+ L   ++  V  S +  G   +S E+    G LV   V
Sbjct: 268  KYPVGKVVNGEVISIHPFGFFVRLEPGVEGLVPRSEVFWGNTRKSLEEVVSAGDLVKVEV 327

Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1482
            ++V+  ++++ ++ K +        E       +V ++V G++  +   G F+ +E   +
Sbjct: 328  INVDKENRKLTLSYKKAKGDPWENIE----DRYNVNNVVTGKVTGIIKQGAFVELEE-GV 382

Query: 1483 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             G   VSE+S   +D    I + GEKVKVKILK+DKE R+I+L +K +
Sbjct: 383  EGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKITLSIKRT 430


>gi|377567693|ref|ZP_09796900.1| 30S ribosomal protein S1 [Gordonia terrae NBRC 100016]
 gi|377535091|dbj|GAB42065.1| 30S ribosomal protein S1 [Gordonia terrae NBRC 100016]
          Length = 491

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IG+   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ + +  + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRV-DEGIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 155/396 (39%), Gaps = 50/396 (12%)

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           + S ++ V    T      AI S+     D  I  G I K+++    +      +G  P 
Sbjct: 6   ITSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPS 65

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSL 672
            EL +    +P+ + +VG  V+  +++      R+ LS      +    + ++L +    
Sbjct: 66  RELSIKHDVDPNEVVNVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEA 125

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
           V G V  V    +++ +  +G+   ++        +E   V       G E + +++ LD
Sbjct: 126 VKGTVIEVVKGGLILDIGLRGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELD 177

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
              +N++LS +  L  +  ++ S+  H +    V  G V +I+  G FV  LG + G   
Sbjct: 178 KNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVH 236

Query: 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 850
            S+         S+   VG  V   +LDV+ +  R++LSLK +        F + H    
Sbjct: 237 VSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH---- 291

Query: 851 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 910
                                  IG ++ GKV +   FG  V  +E   + G +   +LA
Sbjct: 292 ----------------------AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELA 327

Query: 911 GATVE-------SGSVIQAAILDVAKAERLVDLSLK 939
              VE        G      ++D+    R + LSLK
Sbjct: 328 ERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLK 363



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 40.8 bits (94), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 112/259 (43%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +     
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----- 192

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                 ++    F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 193  --QTQSEVRSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 247

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 248  PSEVVAVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRQFAR 289

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +
Sbjct: 290  THAIG--QIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMVK 347

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK ++
Sbjct: 348  VIDIDLERRRISLSLKQAN 366


>gi|433462997|ref|ZP_20420565.1| 30S ribosomal protein S1 [Halobacillus sp. BAB-2008]
 gi|432188134|gb|ELK45352.1| 30S ribosomal protein S1 [Halobacillus sp. BAB-2008]
          Length = 380

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 194/417 (46%), Gaps = 66/417 (15%)

Query: 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVL 1221
            S G  VTG V K++++  L+ +   ++  + I       SEL       H+ KA     +
Sbjct: 15   SAGDIVTGKVVKIEDKQVLVDVGYKVEGIVPI-------SELS----SLHVEKA--SDAV 61

Query: 1222 SINKEKKLLRLVLRPFQDG---ISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGG 1276
            S   E   L L ++  +D    +S + VD      +++     G+I    +  ++ G  G
Sbjct: 62   SEGDE---LTLQVKKVEDDEIVLSKRAVDADKAWQDLEAKFESGEIFEAEVKDVVKG--G 116

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            LVV IG  L G +  + ++   V D    Y +G+ +  KV+E+ R       V LS R+ 
Sbjct: 117  LVVDIG--LRGFIPASLVETYYVED-FEDY-KGRTLSLKVVELDRE---QNRVILSHRAV 169

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
            ++   S              K  E ++ L    +++G V+ +T  G F+ L   +D  V 
Sbjct: 170  VEEEESV-------------KKQEVLQSLEEGQVIEGTVQRLTDFGAFVNLG-GIDGLVH 215

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1456
            +S LS  +VE        G+ V  +VLSV+  ++R+ ++LK +  +     +I   S + 
Sbjct: 216  ISQLSHQHVEKASDVVEEGQAVKVKVLSVDRDNERISLSLKAT--QPGPWHDIQ--SKVS 271

Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
             GD++ G ++R+ S+G F+ +    + GL H+S++S  H+   + +   G++V+VK+L V
Sbjct: 272  SGDVLEGTVRRLVSFGAFVEV-FPGVEGLVHISQISNRHIGTPDEVLDEGQQVEVKVLDV 330

Query: 1517 DKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDM 1573
            D+  +R+SL MK               E E DE   ++  Y +    +NS  ++ DM
Sbjct: 331  DENAKRLSLSMK---------------ELERDEERADIQQYEKED--DNSGFSLSDM 370



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 136/350 (38%), Gaps = 37/350 (10%)

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
            G +V GKV+ ++    +V     V+ + P+  +S   + K       G EL  +V  V+
Sbjct: 16  AGDIVTGKVVKIEDKQVLVDVGYKVEGIVPISELSSLHVEKASDAVSEGDELTLQVKKVE 75

Query: 558 SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
              I ++ +          L +  E+ +  I    +  + K G  V    G++GF P S 
Sbjct: 76  DDEIVLSKRAVDADKAWQDLEAKFESGE--IFEAEVKDVVKGGLVVDI--GLRGFIPASL 131

Query: 618 LGLDPGCEPSSMYHVGQV--VKCRIMS--SIPASRRINLSFMMKPTRVSEDDLVKL---- 669
           +           Y+V      K R +S   +   R  N   +     V E++ VK     
Sbjct: 132 V---------ETYYVEDFEDYKGRTLSLKVVELDREQNRVILSHRAVVEEEESVKKQEVL 182

Query: 670 -----GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
                G ++ G V  +T     V +   G   G +    L+  H+E A+    V++ G  
Sbjct: 183 QSLEEGQVIEGTVQRLTDFGAFVNL---GGIDGLVHISQLSHQHVEKAS---DVVEEGQA 236

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782
              ++L +D ++  + LS K +       + S  S      V+ G V  ++  G FV   
Sbjct: 237 VKVKVLSVDRDNERISLSLKATQPGPWHDIQSKVS---SGDVLEGTVRRLVSFGAFVEVF 293

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
             + G    S+  +       +    GQ V   +LDV+    R++LS+K+
Sbjct: 294 PGVEGLVHISQISNRHIGTPDEVLDEGQQVEVKVLDVDENAKRLSLSMKE 343



 Score = 48.1 bits (113), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V++G V  +  FGA V   GG+  L  +  +S   + K     + G  +  +VL 
Sbjct: 185 LEEGQVIEGTVQRLTDFGAFVNL-GGIDGLVHISQLSHQHVEKASDVVEEGQAVKVKVLS 243

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V   ++RI+++ K T       I S  +      +  G + ++   G FV  + GV+G  
Sbjct: 244 VDRDNERISLSLKATQPGPWHDIQSKVSSGD---VLEGTVRRLVSFGAFVEVFPGVEGLV 300

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S++       P  +   GQ V+ +++     ++R++LS 
Sbjct: 301 HISQISNRHIGTPDEVLDEGQQVEVKVLDVDENAKRLSLSM 341



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 2/150 (1%)

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
             V IS ++ + V K     +EG  V+V++L         +  LKA+         S V 
Sbjct: 212 GLVHISQLSHQHVEKASDVVEEGQAVKVKVLSVDRDNERISLSLKATQPGPWHDIQSKVS 271

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV- 556
            G V++G V  + SFGA V+   GV+ L  +  +S   I  P +    G ++  +VL V 
Sbjct: 272 SGDVLEGTVRRLVSFGAFVEVFPGVEGLVHISQISNRHIGTPDEVLDEGQQVEVKVLDVD 331

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATD 585
             +KR++++ K+     + A +  Y +  D
Sbjct: 332 ENAKRLSLSMKELERDEERADIQQYEKEDD 361



 Score = 42.4 bits (98), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 62/287 (21%)

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYS-KGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQL 727
           G +V+G V  +    V+V V   GY  +G +P   L+  H+E A+     +  G E   L
Sbjct: 17  GDIVTGKVVKIEDKQVLVDV---GYKVEGIVPISELSSLHVEKAS---DAVSEGDEL-TL 69

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
            V   E   ++LS +    + A Q     +      +    V ++++ G  V     L G
Sbjct: 70  QVKKVEDDEIVLSKRAVDADKAWQ--DLEAKFESGEIFEAEVKDVVKGGLVVDI--GLRG 125

Query: 788 FAPRSKAVDGQRADLSKTYYV-------GQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
           F P         A L +TYYV       G+++   +++++ E  R+ LS  ++     ++
Sbjct: 126 FIP---------ASLVETYYVEDFEDYKGRTLSLKVVELDREQNRVILS-HRAVVEEEES 175

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
              QE         +LQS +              G VIEG V    DFG  V+      +
Sbjct: 176 VKKQE---------VLQSLEE-------------GQVIEGTVQRLTDFGAFVNL---GGI 210

Query: 901 YGFITHHQL-------AGATVESGSVIQAAILDVAKAERLVDLSLKT 940
            G +   QL       A   VE G  ++  +L V +    + LSLK 
Sbjct: 211 DGLVHISQLSHQHVEKASDVVEEGQAVKVKVLSVDRDNERISLSLKA 257


>gi|256826974|ref|YP_003150933.1| 30S ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
 gi|256583117|gb|ACU94251.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
          Length = 403

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 137/272 (50%), Gaps = 30/272 (11%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            G+IV G + +++ G  GL++ IG   +      +L+ +   D   G      ++ +V+E+
Sbjct: 121  GEIVSGEVIEVVKG--GLILDIGLRGFLPASLVDLRRVKDLDMYLGTP----LEARVIEM 174

Query: 1320 SRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNV 1378
             R      +V LS R  L+ G  +  +  LS               L+  M ++G V ++
Sbjct: 175  DRN---RNNVVLSRRVLLEEGRKNERAEILSR--------------LTKGMRLKGTVSSI 217

Query: 1379 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
               G F+ L   +D  V +S LS  +V  P +   +G  V  +VL V+   +R+ + LK 
Sbjct: 218  VDFGAFVDLG-GIDGLVHISELSWSHVNHPSEVVKVGDEVEVQVLDVDLQRERISLGLK- 275

Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
               +T     +  + +  VG I+ G++ +   +G F+ +   N+ GL H+SE++  H++ 
Sbjct: 276  ---QTTEDPWVKLVESYPVGSIIDGKVTKTVPFGAFVEL-GPNVEGLVHISEMANKHIEA 331

Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
               +  AG++VKVK+++++ E+RRISL MK++
Sbjct: 332  PTQVVHAGDEVKVKVMEINTERRRISLSMKAA 363



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           GM +KG V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+  +VL V  
Sbjct: 207 GMRLKGTVSSIVDFGAFVDL-GGIDGLVHISELSWSHVNHPSEVVKVGDEVEVQVLDVDL 265

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           + +RI++  K+T     + ++ SY   +   I  G +TK    G FV     V+G    S
Sbjct: 266 QRERISLGLKQTTEDPWVKLVESYPVGS---IIDGKVTKTVPFGAFVELGPNVEGLVHIS 322

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           E+       P+ + H G  VK ++M      RRI+LS 
Sbjct: 323 EMANKHIEAPTQVVHAGDEVKVKVMEINTERRRISLSM 360



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/366 (20%), Positives = 152/366 (41%), Gaps = 52/366 (14%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KIE+    V      +G  P  EL +    +PS + ++G  ++  ++      
Sbjct: 36  LVDGTVVKIERDEVLVDIGFKSEGVIPARELSIRKDADPSDIVNLGDSIEALVLQKEDKD 95

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +   +S ++  K G +VSG V  V    +++ +  +G+   ++     
Sbjct: 96  GRLILSKKRAEYERAWISVEEKFKAGEIVSGEVIEVVKGGLILDIGLRGFLPASLVDLRR 155

Query: 705 ADHLEH--ATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 761
              L+    T +++         +++ +D   +N++LS +  L    +   ++  S +  
Sbjct: 156 VKDLDMYLGTPLEA---------RVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSRLTK 206

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
              + G V +I++ G FV  LG + G    S+         S+   VG  V   +LDV+ 
Sbjct: 207 GMRLKGTVSSIVDFGAFVD-LGGIDGLVHISELSWSHVNHPSEVVKVGDEVEVQVLDVDL 265

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
           +  RI+L LKQ+                                +K VE + +GS+I+GK
Sbjct: 266 QRERISLGLKQTTEDPW---------------------------VKLVESYPVGSIIDGK 298

Query: 882 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLV 934
           V ++  FG  V      +V G +   ++A   +E       +G  ++  ++++    R +
Sbjct: 299 VTKTVPFGAFVEL--GPNVEGLVHISEMANKHIEAPTQVVHAGDEVKVKVMEINTERRRI 356

Query: 935 DLSLKT 940
            LS+K 
Sbjct: 357 SLSMKA 362



 Score = 41.2 bits (95), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 145/352 (41%), Gaps = 23/352 (6%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T ++   G +V G V+ ++    +V      + + P   +S  +   P     +G  +  
Sbjct: 27  TLTEFDEGDLVDGTVVKIERDEVLVDIGFKSEGVIPARELSIRKDADPSDIVNLGDSIEA 86

Query: 552 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
            VL  + K   +   K   + + A +S   +     I  G + ++ K G  +    G++G
Sbjct: 87  LVLQKEDKDGRLILSKKRAEYERAWISVEEKFKAGEIVSGEVIEVVKGGLILDI--GLRG 144

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDD 665
           F P S + L    +   MY +G  ++ R++      +++  SRR+ L    K  R     
Sbjct: 145 FLPASLVDLRR-VKDLDMY-LGTPLEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILS 202

Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEF 724
            +  G  + G V  +      V +   G   G +    L+  H+ H +    V+K G E 
Sbjct: 203 RLTKGMRLKGTVSSIVDFGAFVDL---GGIDGLVHISELSWSHVNHPS---EVVKVGDEV 256

Query: 725 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFL 782
           + Q+L +D +   + L  K +  +   +L       +P  S++ G V   +  G FV   
Sbjct: 257 EVQVLDVDLQRERISLGLKQTTEDPWVKLVES----YPVGSIIDGKVTKTVPFGAFVELG 312

Query: 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
             + G    S+  +      ++  + G  V+  ++++N+E  RI+LS+K + 
Sbjct: 313 PNVEGLVHISEMANKHIEAPTQVVHAGDEVKVKVMEINTERRRISLSMKAAA 364


>gi|403515139|ref|YP_006655959.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
 gi|403080577|gb|AFR22155.1| 30S ribosomal protein S1 [Lactobacillus helveticus R0052]
          Length = 403

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDR 258

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
             R+ +++K ++     Q+     ++LH GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLHEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 14/173 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDN 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLHEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S  D
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSSD 362



 Score = 68.2 bits (165), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGA 213

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            FI +   +  GL H+SE+S  HVD    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 90/186 (48%), Gaps = 23/186 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P      GQ VK KV+ I
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGI 254

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                     + LS++ +                  P    +   DL    + +G VK++T
Sbjct: 255  DND---RHRISLSIKQT-----------------EPSPFEQATADLHEGDVFEGEVKSLT 294

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
            + G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P  +R+ +++K +
Sbjct: 295  NFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354

Query: 1440 DSRTAS 1445
            DS  +S
Sbjct: 355  DSNASS 360



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 134/320 (41%), Gaps = 36/320 (11%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGNAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   +H 
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LHE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 822 ETGRITLSLK--QSCCSSTD 839
              RI+LS+K   S  SS+D
Sbjct: 343 SDRRISLSIKAADSNASSSD 362


>gi|357398732|ref|YP_004910657.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
            46488]
 gi|386354772|ref|YP_006053018.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
            46488]
 gi|337765141|emb|CCB73850.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
            46488]
 gi|365805280|gb|AEW93496.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
            46488]
          Length = 498

 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 187/405 (46%), Gaps = 55/405 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-GIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1537
            E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 375



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|441516244|ref|ZP_20997994.1| 30S ribosomal protein S1 [Gordonia hirsuta DSM 44140 = NBRC 16056]
 gi|441456830|dbj|GAC55955.1| 30S ribosomal protein S1 [Gordonia hirsuta DSM 44140 = NBRC 16056]
          Length = 491

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 182/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +PSE+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++      + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKERDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               V+ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---VEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNKLGKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +    +   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVSVNDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS +  VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKERDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGF----LP----ASLVEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  + +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLNKLGKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDMDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-------QA 922
               IG ++ GKV +   FG  V  EE   + G +   +LA   VE    +         
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVSVNDDAMV 346

Query: 923 AILDVAKAERLVDLSLK 939
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 147/354 (41%), Gaps = 31/354 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKERDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ V+ +I+      +++  SRR  L       R    + + 
Sbjct: 152 LVEMRRVRDLQP----YIGKEVEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNKLG 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            G    S+  +       +   V       ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVNDDAMVKVIDIDLERRRISLSLKQANEDYTE 371


>gi|241896285|ref|ZP_04783581.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
 gi|241870526|gb|EER74277.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
          Length = 405

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 140/269 (52%), Gaps = 27/269 (10%)

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
            DIV   +++ + G  GLVV +   + G V  + ++N  V D L+ Y +GQ ++ K++EI+
Sbjct: 114  DIVEAPVTQAVKG--GLVVDV-EGVRGFVPASMIENRFVQD-LNQY-KGQTIRAKIIEIN 168

Query: 1321 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1380
                    + LS R   D ++   S+ L+   D          +LS   +++G V  +T+
Sbjct: 169  AA---DSRLILSRR---DVLNEERSAALARIFD----------ELSVGDVIEGKVARMTN 212

Query: 1381 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  +R+ +++K + 
Sbjct: 213  FGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPERERISLSIKATQ 271

Query: 1441 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
                  +          G ++ G +KRV  +G F+ +    + GL HVS++S  H+ N  
Sbjct: 272  PGPWDAA----AEKAPAGTVLEGTVKRVVDFGAFVEV-FPGVEGLVHVSQISHKHIANPS 326

Query: 1501 TIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
             + +AG+KV+VK+L V+ E++R+SL +K+
Sbjct: 327  DVLKAGDKVQVKVLDVNPERQRLSLSIKA 355



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1472
            G+ +  +++ +     R+ ++ +   ++ R+A+ + I     L VGD++ G++ R+ ++G
Sbjct: 157  GQTIRAKIIEINAADSRLILSRRDVLNEERSAALARI--FDELSVGDVIEGKVARMTNFG 214

Query: 1473 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             FI +   +  GL HVSE+S + V     +   GE+VKVK+L +D E+ RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPERERISLSIKAT 270



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G V++GKV  + +FGA +   GGV  L  +  +S   + +P     VG E+  +VLG+  
Sbjct: 200 GDVIEGKVARMTNFGAFIDL-GGVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDP 258

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           + +RI+++ K T      A        T   +  G + ++   G FV  + GV+G    S
Sbjct: 259 ERERISLSIKATQPGPWDAAAEKAPAGT---VLEGTVKRVVDFGAFVEVFPGVEGLVHVS 315

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++       PS +   G  V+ +++   P  +R++LS 
Sbjct: 316 QISHKHIANPSDVLKAGDKVQVKVLDVNPERQRLSLSI 353



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 155/352 (44%), Gaps = 27/352 (7%)

Query: 494 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMS---EFEIVKPGKKFKVGAE 548
           ++VK G VVKG+V+A+D +   IV   G GV+ + PL  ++   + ++    K   V   
Sbjct: 16  AEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDADVNDLVKVGDVLDL 75

Query: 549 LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
           +V   +G   +  +    K  ++++ A     ++ +   I    +T+  K G  V    G
Sbjct: 76  VVVSTIGSDKEGGSYLLSKRRLEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDV-EG 134

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSE--- 663
           V+GF P S +  +   +  + Y  GQ ++ +I+    A  R+ LS   ++   R +    
Sbjct: 135 VRGFVPASMIE-NRFVQDLNQYK-GQTIRAKIIEINAADSRLILSRRDVLNEERSAALAR 192

Query: 664 -DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
             D + +G ++ G V  +T     + +   G   G +    ++   E  +    V+  G 
Sbjct: 193 IFDELSVGDVIEGKVARMTNFGAFIDL---GGVDGLVHVSEISH--ERVSQPSDVLSVGE 247

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDAS--HIHPNSVVHGYVCNIIETGCFV 779
           E   ++L LD E   + LS     I + Q  P DA+       +V+ G V  +++ G FV
Sbjct: 248 EVKVKVLGLDPERERISLS-----IKATQPGPWDAAAEKAPAGTVLEGTVKRVVDFGAFV 302

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
                + G    S+      A+ S     G  V+  +LDVN E  R++LS+K
Sbjct: 303 EVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVQVKVLDVNPERQRLSLSIK 354



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 80/179 (44%), Gaps = 23/179 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD++ G+++++ +   G  + +G  + G VH +E+ +  VS P      G+ VK KVL +
Sbjct: 200  GDVIEGKVARMTNF--GAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGL 256

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                     + LS++++                  PG      E      +++G VK V 
Sbjct: 257  DPERE---RISLSIKAT-----------------QPGPWDAAAEKAPAGTVLEGTVKRVV 296

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
              G F+ +   ++  V +S +S  ++ +P      G  V  +VL V P  +R+ +++K 
Sbjct: 297  DFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVQVKVLDVNPERQRLSLSIKA 355



 Score = 44.3 bits (103), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 30/230 (13%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT--VMKSVIKPGYEF 724
           VK+G +V G V  +  N  V+  I     +G IP   L    +     ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDADVNDLVKVGDVLDLVV 77

Query: 725 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
              +  D E  + LLS +   + + +     AS    + +V   V   ++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDVEG- 134

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS +             
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRD------------ 180

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
              L EE+ A L          +  +   +G VIEGKV    +FG  +  
Sbjct: 181 --VLNEERSAALA---------RIFDELSVGDVIEGKVARMTNFGAFIDL 219



 Score = 40.8 bits (94), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 37/185 (20%)

Query: 764 VVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           V+ G V  +   G F+  LG + G    S+    + +  S    VG+ V+  +L ++ E 
Sbjct: 202 VIEGKVARMTNFGAFID-LGGVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPER 260

Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
            RI+LS+K +     DA+                            E    G+V+EG V 
Sbjct: 261 ERISLSIKATQPGPWDAA---------------------------AEKAPAGTVLEGTVK 293

Query: 884 ESNDFGVVVSFEEHSDVYGF-----ITHHQLAGAT--VESGSVIQAAILDVAKAERLVDL 936
              DFG  V  E    V G      I+H  +A  +  +++G  +Q  +LDV    + + L
Sbjct: 294 RVVDFGAFV--EVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVQVKVLDVNPERQRLSL 351

Query: 937 SLKTV 941
           S+K +
Sbjct: 352 SIKAL 356


>gi|227488118|ref|ZP_03918434.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
            51867]
 gi|227541514|ref|ZP_03971563.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
            51866]
 gi|227091980|gb|EEI27292.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
            51867]
 gi|227182670|gb|EEI63642.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
            51866]
          Length = 482

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 28/257 (10%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL++ IG   +      E++ +   +P  G    Q ++ K++E+ +      +V LS R
Sbjct: 134  GGLILDIGLRGFLPASLVEMRRVRDLEPYIG----QEIEAKIIELDKNRN---NVVLSRR 186

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + L+   S   S+              +  L    + +G V ++ + G F+ L   +D  
Sbjct: 187  AWLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGL 232

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      + 
Sbjct: 233  VHVSELSWKHIDHPSEVVSVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFAR 287

Query: 1455 LH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G+++ VK+
Sbjct: 288  THAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVSVGQEIMVKV 346

Query: 1514 LKVDKEKRRISLGMKSS 1530
            + +D E+RRISL +K +
Sbjct: 347  IDIDLERRRISLSLKQA 363



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVSVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  +  VGQ +  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVSVGQEIMVKVIDIDLERRRISLSL 360



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 138/338 (40%), Gaps = 48/338 (14%)

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLLLSKKRAQYERAWGTIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVSVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+          +   VGQ +   ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVSVGQEIMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W+EG+
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGY 405


>gi|383753845|ref|YP_005432748.1| putative 30S ribosomal protein S1 [Selenomonas ruminantium subsp.
            lactilytica TAM6421]
 gi|381365897|dbj|BAL82725.1| putative 30S ribosomal protein S1 [Selenomonas ruminantium subsp.
            lactilytica TAM6421]
          Length = 354

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 140/279 (50%), Gaps = 27/279 (9%)

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
            +M+  +  G+ V   I++++ G  GLV  +   L G +  ++++   V D LS Y  GQ 
Sbjct: 102  DMEAIMERGETVQATINQVVKG--GLVASVN-GLRGFIPASQMELHFVKD-LSVY-AGQT 156

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            V+C+++EI    +    + LS R  L+ + +              K  E    L P+ IV
Sbjct: 157  VECEIIEIDVHKQ---RLVLSRRKLLEAVRAE-------------KEDEVFSTLQPDTIV 200

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
            +G VK +   G FI +   +D    +S+L+   V+ P     +G+ +   V S++  +KR
Sbjct: 201  RGTVKRIVDYGAFIDIG-GVDGLAHISDLAWNRVKHPSDVLEVGQELDVYVKSIDQEAKR 259

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
            + +++K     T     ++N      GDI+ G+I ++  +G F+ IE     GL  + EL
Sbjct: 260  ISLSVKD----TMRDPWLDNAEKYAEGDIIEGKIIKLTDFGAFMEIE-PGFDGLIPMGEL 314

Query: 1492 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +E  ++  +     G++VKVK+L++D +++RISL +  +
Sbjct: 315  AEKRIERADEAVHVGDEVKVKVLRIDTKRKRISLSITKA 353



 Score = 60.8 bits (146), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S ++P  +V+G V  +  +GA +   GGV  L  +  ++   +  P    +VG EL   V
Sbjct: 192 STLQPDTIVRGTVKRIVDYGAFIDI-GGVDGLAHISDLAWNRVKHPSDVLEVGQELDVYV 250

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             +  ++KRI+++ K T+    L     YAE     I  G I K+   G F+    G  G
Sbjct: 251 KSIDQEAKRISLSVKDTMRDPWLDNAEKYAEGD---IIEGKIIKLTDFGAFMEIEPGFDG 307

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             P  EL            HVG  VK +++      +RI+LS 
Sbjct: 308 LIPMGELAEKRIERADEAVHVGDEVKVKVLRIDTKRKRISLSI 350



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1474
            G+ V   ++ ++   +R+ ++ +       ++ E    S L    IV G +KR+  YG F
Sbjct: 154  GQTVECEIIEIDVHKQRLVLSRRKLLEAVRAEKEDEVFSTLQPDTIVRGTVKRIVDYGAF 213

Query: 1475 ITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
            I I   +  GL H+S+L+ + V +   +   G+++ V +  +D+E +RISL +K +    
Sbjct: 214  IDIGGVD--GLAHISDLAWNRVKHPSDVLEVGQELDVYVKSIDQEAKRISLSVKDTMRDP 271

Query: 1535 DADNLQMSSE 1544
              DN +  +E
Sbjct: 272  WLDNAEKYAE 281



 Score = 49.3 bits (116), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 109/242 (45%), Gaps = 19/242 (7%)

Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMK 657
           G  V   NG++GF P S++ L    +  S+Y  GQ V+C I+      +R+ LS   +++
Sbjct: 123 GGLVASVNGLRGFIPASQMELH-FVKDLSVY-AGQTVECEIIEIDVHKQRLVLSRRKLLE 180

Query: 658 PTRVSEDDLV----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 712
             R  ++D V    +  ++V G V  +      + +   G   G      LA + ++H +
Sbjct: 181 AVRAEKEDEVFSTLQPDTIVRGTVKRIVDYGAFIDI---GGVDGLAHISDLAWNRVKHPS 237

Query: 713 VMKSVIKPGYEFDQLL-VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
               V++ G E D  +  +D E+  + LS K ++ +       +A       ++ G +  
Sbjct: 238 ---DVLEVGQELDVYVKSIDQEAKRISLSVKDTMRDP---WLDNAEKYAEGDIIEGKIIK 291

Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
           + + G F+       G  P  +  + +     +  +VG  V+  +L ++++  RI+LS+ 
Sbjct: 292 LTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHVGDEVKVKVLRIDTKRKRISLSIT 351

Query: 832 QS 833
           ++
Sbjct: 352 KA 353


>gi|302546255|ref|ZP_07298597.1| ribosomal protein S1 [Streptomyces hygroscopicus ATCC 53653]
 gi|302463873|gb|EFL26966.1| ribosomal protein S1 [Streptomyces himastatinicus ATCC 53653]
          Length = 502

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 45.4 bits (106), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 127/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQI--GQVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQAN 369


>gi|213965205|ref|ZP_03393402.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
 gi|213952057|gb|EEB63442.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
          Length = 487

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 170/372 (45%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD +  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVE------VGDEIDAL 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++      + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEQLKENDEPVTGTVIEVVKG--GLIL 138

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG----QEIEAKIIELDKNRN---NVVLSRRAWLEQ 191

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 192  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 237

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H +G
Sbjct: 238  LSWKHIDHPSEVVQVGDEVTVEVLEVDLNRERVSLSLKAT-----QEDPWRVFARTHAIG 292

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+  H+D  + I    E+V VK++ +D 
Sbjct: 293  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELASRHIDVPDQIVSVDEQVMVKVIDIDL 351

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 352  ERRRISLSLKQA 363



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 8/183 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVT 257

Query: 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLEVDLNRERVSLSLKATQEDPWRVFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-DLV 667
           ++G    SEL       P  +  V + V  +++      RRI+LS        +E+ D  
Sbjct: 315 IEGLVHISELASRHIDVPDQIVSVDEQVMVKVIDIDLERRRISLSLKQADEDFTEEFDPT 374

Query: 668 KLG 670
           K G
Sbjct: 375 KYG 377



 Score = 49.3 bits (116), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 164/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDEIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEQLKE-NDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D     + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLEVDLNRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+          +   V + V   ++D++ E  RI+LSLKQ+     D  F +
Sbjct: 315 IEGLVHISELASRHIDVPDQIVSVDEQVMVKVIDIDLERRRISLSLKQA-----DEDFTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPTKYGMGDSYDEQGNYIFPEGFDPETNEWMEGF 405


>gi|168704591|ref|ZP_02736868.1| 30S ribosomal protein S1 [Gemmata obscuriglobus UQM 2246]
          Length = 618

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 144/291 (49%), Gaps = 34/291 (11%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNIC-VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            G  V++ P + G VH +E+  I  ++DP      G  V+ +VL I+   +     E+SL 
Sbjct: 312  GAFVKLEPGIEGLVHISEMSWIKRIADPKEIVQIGDKVEVQVLNINHDKK-----EISL- 365

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
                GM    S+             E  +      ++ G V+N+T+ G FI +   +D  
Sbjct: 366  ----GMKQCQSNPWG----------EVAKKYPTGTVITGVVRNLTNYGAFIEIEEGIDGL 411

Query: 1395 VLLSNLSDGYVE---SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1451
            + +S++S  YV    +P +    G+ +   VLSV+   KRV + LK   +      E + 
Sbjct: 412  LHVSDMS--YVRKVSNPSEVVQKGQKLTCVVLSVDQERKRVALGLKQMGN---DPWETDI 466

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
                  G  V G++ ++ ++G+F+ +E   L GL H+SEL++  V++ E + + G++V V
Sbjct: 467  PGRYMPGQKVRGKVTKLTNFGVFVQLEE-GLEGLLHISELTDAKVESPEEVVKVGDEVDV 525

Query: 1512 KILKVDKEKRRISLGMKS---SYFKNDADNLQMSSEEESDEAIEEVGSYNR 1559
            K+L+VD + R+I L MK+   +   +D  +L +    E+++A+EE     R
Sbjct: 526  KVLRVDAKDRKIGLSMKNVDDNTVPDDVQDLPIEG-PEAEKAMEERAKATR 575



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 130/275 (47%), Gaps = 35/275 (12%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE--GQFVKCKV 1316
            EGD+V G++ K +   GGL+V IG ++     F     + +  P S  DE   + ++C +
Sbjct: 126  EGDVVAGKVLKKIK--GGLLVNIGVNV-----FLPASQVDIRRPQS-IDEYIERTIECVI 177

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L+I    R   ++ +S R  ++         L             + +L    I  G VK
Sbjct: 178  LKIDEQRR---NIVVSRRKLIEDRRKIQKDKL-------------LGELEVGQIRTGVVK 221

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            N+   G F+ L   +D  + ++++    V +P     I + +   +L ++   +++ ++L
Sbjct: 222  NIAEFGAFVDLG-GIDGLLHITDMGWHRVTNPRDVVQIDQTLEVYILHIDREKEKIALSL 280

Query: 1437 KTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE-D 1494
            K          E    +++ H G++V      +  YG F+ +E   + GL H+SE+S   
Sbjct: 281  KHKTPSPWQNIEAKYPINSRHTGEVV-----NIMPYGAFVKLE-PGIEGLVHISEMSWIK 334

Query: 1495 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
             + + + I + G+KV+V++L ++ +K+ ISLGMK 
Sbjct: 335  RIADPKEIVQIGDKVEVQVLNINHDKKEISLGMKQ 369



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 132/292 (45%), Gaps = 41/292 (14%)

Query: 1158 ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY-----EPSELQEFQRRFHI 1212
            E    I  R TG V  +    A + +   ++  + I + ++     +P E+        I
Sbjct: 292  EAKYPINSRHTGEVVNIMPYGAFVKLEPGIEGLVHISEMSWIKRIADPKEI------VQI 345

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
            G  V   VL+IN +KK + L ++  Q   S+   +++          G ++ G +  + +
Sbjct: 346  GDKVEVQVLNINHDKKEISLGMKQCQ---SNPWGEVAKK-----YPTGTVITGVVRNLTN 397

Query: 1273 GVGGLVVQIGPHLYGRVHFTELKNI-CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
               G  ++I   + G +H +++  +  VS+P     +GQ + C VL + +  +       
Sbjct: 398  Y--GAFIEIEEGIDGLLHVSDMSYVRKVSNPSEVVQKGQKLTCVVLSVDQERK------- 448

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
              R +L G+    +    TD+  PG+++       P   V+G V  +T+ G F+ L   L
Sbjct: 449  --RVAL-GLKQMGNDPWETDI--PGRYM-------PGQKVRGKVTKLTNFGVFVQLEEGL 496

Query: 1392 DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1443
            +  + +S L+D  VESPE+   +G  V  +VL V+   +++ +++K  D  T
Sbjct: 497  EGLLHISELTDAKVESPEEVVKVGDEVDVKVLRVDAKDRKIGLSMKNVDDNT 548



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 98/463 (21%), Positives = 177/463 (38%), Gaps = 61/463 (13%)

Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP---GKKFKVGAELVFRV 553
           K G VV GKV+     G +V    GV    P    S+ +I +P    +  +   E V   
Sbjct: 125 KEGDVVAGKVLKKIKGGLLVNI--GVNVFLP---ASQVDIRRPQSIDEYIERTIECVILK 179

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSS--YAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           +  + + I V+ +K L++ +  I       E     I  G +  I + G FV    G+ G
Sbjct: 180 IDEQRRNIVVSRRK-LIEDRRKIQKDKLLGELEVGQIRTGVVKNIAEFGAFVDL-GGIDG 237

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK--L 669
               +++G      P  +  + Q ++  I+       +I LS   K     ++   K  +
Sbjct: 238 LLHITDMGWHRVTNPRDVVQIDQTLEVYILHIDREKEKIALSLKHKTPSPWQNIEAKYPI 297

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFD-Q 726
            S  +G V  + P    V +       G     H+++   ++     K +++ G + + Q
Sbjct: 298 NSRHTGEVVNIMPYGAFVKL-----EPGIEGLVHISEMSWIKRIADPKEIVQIGDKVEVQ 352

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L ++++   + L  K    N   ++   A      +V+ G V N+   G F+     + 
Sbjct: 353 VLNINHDKKEISLGMKQCQSNPWGEV---AKKYPTGTVITGVVRNLTNYGAFIEIEEGID 409

Query: 787 GFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
           G    S     ++ ++ S+    GQ +   +L V+ E  R+ L LKQ      +      
Sbjct: 410 GLLHVSDMSYVRKVSNPSEVVQKGQKLTCVVLSVDQERKRVALGLKQMGNDPWETDIPGR 469

Query: 846 HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 905
                                     ++ G  + GKV +  +FGV V  EE   + G + 
Sbjct: 470 --------------------------YMPGQKVRGKVTKLTNFGVFVQLEEG--LEGLLH 501

Query: 906 HHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTV 941
             +L  A VES       G  +   +L V   +R + LS+K V
Sbjct: 502 ISELTDAKVESPEEVVKVGDEVDVKVLRVDAKDRKIGLSMKNV 544



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 161/387 (41%), Gaps = 36/387 (9%)

Query: 188 HVGQLVSCIVLQLDDDKKEI--GKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIED 245
           ++ + + C++L++D+ ++ I   +RK+    R   + K   L  ++ G + T  VK+I +
Sbjct: 168 YIERTIECVILKIDEQRRNIVVSRRKLIEDRRK--IQKDKLLGELEVGQIRTGVVKNIAE 225

Query: 246 HGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
            G  +  G     G L   ++      N    V+    L+  +  IDR ++ + LS    
Sbjct: 226 FGAFVDLG--GIDGLLHITDMGWHRVTNPRDVVQIDQTLEVYILHIDREKEKIALSLKHK 283

Query: 302 TVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTT 361
           T S     + K   I+    G +V+     I+  G  +       G V I  +       
Sbjct: 284 TPSPWQNIEAK-YPINSRHTGEVVN-----IMPYGAFVKLEPGIEGLVHISEMSWIKRIA 337

Query: 362 NWKNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVG---DIYD 412
           + K       KV  ++L ++   + + L +     NP+  +  + P   V  G   ++ +
Sbjct: 338 DPKEIVQIGDKVEVQVLNINHDKKEISLGMKQCQSNPWGEVAKKYPTGTVITGVVRNLTN 397

Query: 413 QSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 472
               + ++ G+  LL      VS  +YV       E V+K +K     +CV + +   R 
Sbjct: 398 YGAFIEIEEGIDGLLH-----VSDMSYVRKVSNPSEVVQKGQKL----TCVVLSVDQERK 448

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
              L    +    +E  +       PG  V+GKV  + +FG  VQ   G++ L  +  ++
Sbjct: 449 RVALGLKQMGNDPWETDIPGR--YMPGQKVRGKVTKLTNFGVFVQLEEGLEGLLHISELT 506

Query: 533 EFEIVKPGKKFKVGAELVFRVLGVKSK 559
           + ++  P +  KVG E+  +VL V +K
Sbjct: 507 DAKVESPEEVVKVGDEVDVKVLRVDAK 533



 Score = 40.8 bits (94), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 7/175 (4%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF-EIVKPGKKFKVGAELVFRVLGV- 556
           G V+ G V  + ++GA ++   G+  L  +  MS   ++  P +  + G +L   VL V 
Sbjct: 385 GTVITGVVRNLTNYGAFIEIEEGIDGLLHVSDMSYVRKVSNPSEVVQKGQKLTCVVLSVD 444

Query: 557 -KSKRITVTHKKTLVKS-KLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            + KR+ +  K+      +  I   Y          G +TK+   G FV+   G++G   
Sbjct: 445 QERKRVALGLKQMGNDPWETDIPGRYMPGQK---VRGKVTKLTNFGVFVQLEEGLEGLLH 501

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL 669
            SEL       P  +  VG  V  +++      R+I LS          DD+  L
Sbjct: 502 ISELTDAKVESPEEVVKVGDEVDVKVLRVDAKDRKIGLSMKNVDDNTVPDDVQDL 556


>gi|320352187|ref|YP_004193526.1| 30S ribosomal protein S1 [Desulfobulbus propionicus DSM 2032]
 gi|320120689|gb|ADW16235.1| SSU ribosomal protein S1P [Desulfobulbus propionicus DSM 2032]
          Length = 577

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 134/280 (47%), Gaps = 30/280 (10%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            + M+T + EG I+ G I+ I     GL + +G  + G  H T+L    VS P   Y  G+
Sbjct: 198  EQMRTSLQEGQIIRGAITNITDY--GLFIDLG-GMDGLCHITDLSWGRVSHPSKLYTVGE 254

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
             ++ K+L+  +          S R SL G+    S         P + +   +  +P   
Sbjct: 255  EIEVKILKYDKN---------SDRVSL-GVKQLKSD--------PWERVP--QQYAPGSR 294

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            V+G V ++T  G F+ L   ++  V +S +S       P K   +G+ +  +VL VE  +
Sbjct: 295  VKGKVVSITDYGVFVELEEGVEGLVHISEMSWSKKPRHPSKIVGVGEEIEVQVLKVEAET 354

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
            KR+ + +K          E     +  VG ++ G+IK +  +G+FI IE   + GL HVS
Sbjct: 355  KRISLGMKQLQPNPWDVVE----ESYPVGSVIEGKIKNITDFGIFIGIEE-GIDGLIHVS 409

Query: 1490 ELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            +LS  + + +    Y  GE ++  +LK+DKE  R SLG+K
Sbjct: 410  DLSWTERIKHPSEKYSKGETIQAVVLKIDKENERFSLGVK 449



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 169/380 (44%), Gaps = 48/380 (12%)

Query: 1155 LFEECD----VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRF 1210
            LFE+ D    +++G+   G V  + ++  L+ +    KA+ FI  S +     ++ +R  
Sbjct: 25   LFEQEDNNTVINVGEVALGTVVGLSSDAVLIDVGD--KAESFIPLSEFRH---EDPEREI 79

Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISK 1269
             IG       + I K K    L+L        +K + I        I E D  + GRI  
Sbjct: 80   KIGDQFE---VFIEKRKDEGGLLLS------REKAIAIKVWEQIAKIQEEDGTIEGRIDN 130

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
             + G  G+ V IG   +      +L+ +   D L G    Q  + K+L+ +R      +V
Sbjct: 131  RVKG--GMSVDIGVPAFLPYSQIDLRPVKDLDSLIG----QTFEFKILKFNRKRN---NV 181

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
             +S R+ L+   +     + T              L    I++G + N+T  G FI L  
Sbjct: 182  VISRRAILENQRTALREQMRTS-------------LQEGQIIRGAITNITDYGLFIDLG- 227

Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
             +D    +++LS G V  P K + +G+ +  ++L  +  S RV + +K   S    +   
Sbjct: 228  GMDGLCHITDLSWGRVSHPSKLYTVGEEIEVKILKYDKNSDRVSLGVKQLKSDPWERVP- 286

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEK 1508
                    G  V G++  +  YG+F+ +E   + GL H+SE+S      +   I   GE+
Sbjct: 287  ---QQYAPGSRVKGKVVSITDYGVFVELEE-GVEGLVHISEMSWSKKPRHPSKIVGVGEE 342

Query: 1509 VKVKILKVDKEKRRISLGMK 1528
            ++V++LKV+ E +RISLGMK
Sbjct: 343  IEVQVLKVEAETKRISLGMK 362



 Score = 70.5 bits (171), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 111/474 (23%), Positives = 191/474 (40%), Gaps = 69/474 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V  G V+ + S   ++      ++  PL   SEF    P ++ K+G +    +   K 
Sbjct: 38  GEVALGTVVGLSSDAVLIDVGDKAESFIPL---SEFRHEDPEREIKIGDQFEVFIEKRKD 94

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
           +   +  ++  +  K+    +  +  D  I  G I    K G  V    GV  F P S++
Sbjct: 95  EGGLLLSREKAIAIKVWEQIAKIQEEDGTI-EGRIDNRVKGGMSVDI--GVPAFLPYSQI 151

Query: 619 GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
            L P  +  S+  +GQ  + +I+      +++  SRR  L       R      ++ G +
Sbjct: 152 DLRPVKDLDSL--IGQTFEFKILKFNRKRNNVVISRRAILENQRTALREQMRTSLQEGQI 209

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEFD-QL 727
           + G +  +T   + + +   G   G     H+ D     + H + + +V   G E + ++
Sbjct: 210 IRGAITNITDYGLFIDL---GGMDGLC---HITDLSWGRVSHPSKLYTV---GEEIEVKI 260

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           L  D  S  + L  K    +  +++P   +   P S V G V +I + G FV     + G
Sbjct: 261 LKYDKNSDRVSLGVKQLKSDPWERVPQQYA---PGSRVKGKVVSITDYGVFVELEEGVEG 317

Query: 788 FAPRSKAVDGQRA-DLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
               S+    ++    SK   VG+ +   +L V +ET RI+L +KQ              
Sbjct: 318 LVHISEMSWSKKPRHPSKIVGVGEEIEVQVLKVEAETKRISLGMKQ-------------- 363

Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
                    LQ +  +  E    E + +GSVIEGK+    DFG+ +  EE  D  G I  
Sbjct: 364 ---------LQPNPWDVVE----ESYPVGSVIEGKIKNITDFGIFIGIEEGID--GLIHV 408

Query: 907 HQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSN 952
             L+              G  IQA +L + K      L +K +  D ++ A+SN
Sbjct: 409 SDLSWTERIKHPSEKYSKGETIQAVVLKIDKENERFSLGVKQLEPDPWQAASSN 462



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 87/167 (52%), Gaps = 6/167 (3%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1428
            +++G +KN+T  G FI +   +D  + +S+LS    ++ P +++  G+ +   VL ++  
Sbjct: 381  VIEGKIKNITDFGIFIGIEEGIDGLIHVSDLSWTERIKHPSEKYSKGETIQAVVLKIDKE 440

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
            ++R  + +K  +      +     SN  +G  V G I  V  +G+F+ +E   + GL HV
Sbjct: 441  NERFSLGVKQLEPDPWQAAS----SNYPIGSTVEGTITNVTDFGVFVQLEE-GIEGLVHV 495

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1535
            SE+S+D V     ++   + +K  ++ V  + R+I L +K+   K D
Sbjct: 496  SEISKDKVKTPVGMFNVNDTLKAMVINVSADDRKIGLSVKALQEKED 542



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/423 (19%), Positives = 170/423 (40%), Gaps = 74/423 (17%)

Query: 714  MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNI 772
            + S+I   +EF ++L  + + +N+++S +  L N    L     + +    ++ G + NI
Sbjct: 159  LDSLIGQTFEF-KILKFNRKRNNVVISRRAILENQRTALREQMRTSLQEGQIIRGAITNI 217

Query: 773  IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
             + G F+  LG + G    +    G+ +  SK Y VG+ +   IL  +  + R++L +KQ
Sbjct: 218  TDYGLFID-LGGMDGLCHITDLSWGRVSHPSKLYTVGEEIEVKILKYDKNSDRVSLGVKQ 276

Query: 833  SCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVV 892
                  +    Q                           +  GS ++GKV    D+GV V
Sbjct: 277  LKSDPWERVPQQ---------------------------YAPGSRVKGKVVSITDYGVFV 309

Query: 893  SFEEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
              EE   V G +   +++ +         V  G  I+  +L V    + + L +K +  +
Sbjct: 310  ELEEG--VEGLVHISEMSWSKKPRHPSKIVGVGEEIEVQVLKVEAETKRISLGMKQLQPN 367

Query: 945  RFREANSNRQAQ-----KKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
             +     +         K K   +    +G+ + ++ ++ +                   
Sbjct: 368  PWDVVEESYPVGSVIEGKIKNITDFGIFIGIEEGIDGLIHV------------------- 408

Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKS 1059
            + +S     K P +++  G+++ A V+ +   +   R  L +K +      ++      S
Sbjct: 409  SDLSWTERIKHPSEKYSKGETIQAVVLKIDKENE--RFSLGVKQLEPDPWQAAS-----S 461

Query: 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTA 1119
            +Y +GS V+  IT +    + ++   G  G +H++E++ DK   V+     F +  T+ A
Sbjct: 462  NYPIGSTVEGTITNVTDFGVFVQLEEGIEGLVHVSEISKDK---VKTPVGMFNVNDTLKA 518

Query: 1120 RII 1122
             +I
Sbjct: 519  MVI 521



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 127/304 (41%), Gaps = 37/304 (12%)

Query: 367 YNQHKKVNARILFVDPTSRAVGLTL-----NPY--LLHNRAPPSHVK--VGDIYDQSKVV 417
           Y   +++  +IL  D  S  V L +     +P+  +    AP S VK  V  I D    V
Sbjct: 250 YTVGEEIEVKILKYDKNSDRVSLGVKQLKSDPWERVPQQYAPGSRVKGKVVSITDYGVFV 309

Query: 418 RVDRGLGLLLDIPST-----PVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRH 472
            ++ G+  L+ I        P      V + +  E +V K+E + K  S      LG + 
Sbjct: 310 ELEEGVEGLVHISEMSWSKKPRHPSKIVGVGEEIEVQVLKVEAETKRIS------LGMKQ 363

Query: 473 LEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMS 532
           L+     +++ S              G V++GK+  +  FG  +    G+  L  +  +S
Sbjct: 364 LQPNPWDVVEES-----------YPVGSVIEGKIKNITDFGIFIGIEEGIDGLIHVSDLS 412

Query: 533 EFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
             E +K P +K+  G  +   VL +  +++R ++  K+       A  S+Y   +     
Sbjct: 413 WTERIKHPSEKYSKGETIQAVVLKIDKENERFSLGVKQLEPDPWQAASSNYPIGS---TV 469

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G IT +   G FV+   G++G    SE+  D    P  M++V   +K  +++     R+
Sbjct: 470 EGTITNVTDFGVFVQLEEGIEGLVHVSEISKDKVKTPVGMFNVNDTLKAMVINVSADDRK 529

Query: 650 INLS 653
           I LS
Sbjct: 530 IGLS 533


>gi|50954808|ref|YP_062096.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951290|gb|AAT88991.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 480

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 181/401 (45%), Gaps = 55/401 (13%)

Query: 1142 PSMLTVSEIGSKLLFEECD------VSIGQRVTGYVYKVDNEWALLTISRH----LKAQL 1191
            P  + V++IGS   F           + G  + G V K+D +  LL +       + ++ 
Sbjct: 10   PKQVAVNDIGSAEDFLAAVEKTLKFFNDGDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRE 69

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +PSE+        +G  V   VL   KE K  RL+L   +        D+   
Sbjct: 70   LSIKHDIDPSEV------VDVGDTVEALVL--QKEDKEGRLILSKKRAQYERAWGDVEK- 120

Query: 1252 NMQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
                 I + D +V G + +++ G  GL+V IG   +      EL+ +    P  G    Q
Sbjct: 121  -----IKDADGVVTGTVIEVVKG--GLIVDIGLRGFLPASLIELRRVRDLTPYLG----Q 169

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
             ++ K+LE+ +      +V LS R+ L+   S + +               + +L    +
Sbjct: 170  EIEAKILELDKNRN---NVVLSRRALLEQTQSESRTTF-------------LNNLYKGQV 213

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
             +G V ++ + G F+ L   +D  V +S LS  ++E   +   +G+ V   +L V+   +
Sbjct: 214  RKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLDRE 272

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
            RV ++LK +      +      +  H +G +  G++ ++  +G F+ + +  + GL H+S
Sbjct: 273  RVSLSLKAT-----QEDPWQVFARTHAIGQVAPGKVTKLVPFGAFVRVAD-GIEGLVHIS 326

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            ELS  HV+  E +   GE+V VK++ +D E+RRISL +K +
Sbjct: 327  ELSGKHVELAEQVVSVGEEVFVKVIDIDLERRRISLSLKQA 367



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 148/358 (41%), Gaps = 38/358 (10%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           +  G + KI++    +      +G  P  EL +    +PS +  VG  V+  ++      
Sbjct: 40  LIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDIDPSEVVDVGDTVEALVLQKEDKE 99

Query: 648 RRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS        +  D+ K+     +V+G V  V    ++V +  +G+    +P    
Sbjct: 100 GRLILSKKRAQYERAWGDVEKIKDADGVVTGTVIEVVKGGLIVDIGLRGF----LP---- 151

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPN 762
           A  +E   V       G E + ++L LD   +N++LS +  L  + ++   +  ++++  
Sbjct: 152 ASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRTTFLNNLYKG 211

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   IL+V+ +
Sbjct: 212 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLD 270

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFI-IGSVIEGK 881
             R++LSLK +        F + H       A+ Q +    ++L     F+ +   IEG 
Sbjct: 271 RERVSLSLKATQEDPWQV-FARTH-------AIGQVAPGKVTKLVPFGAFVRVADGIEGL 322

Query: 882 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
           VH S   G                H +LA   V  G  +   ++D+    R + LSLK
Sbjct: 323 VHISELSG---------------KHVELAEQVVSVGEEVFVKVIDIDLERRRISLSLK 365



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 157/350 (44%), Gaps = 35/350 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +++G V+ +D    ++      + + P   +S    + P +   VG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDIDPSEVVDVGDTVEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +A D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVEKIKDA-DGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R +  + + 
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRTTFLNNLY 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    V  G V  ++  G FVR    
Sbjct: 264 ILEVDLDRERVSLSLK-----ATQEDPWQVFARTHAIGQVAPGKVTKLVPFGAFVRVADG 318

Query: 785 LTGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           + G    S+ + G+  +L+ +   VG+ V   ++D++ E  RI+LSLKQ+
Sbjct: 319 IEGLVHISE-LSGKHVELAEQVVSVGEEVFVKVIDIDLERRRISLSLKQA 367


>gi|266623563|ref|ZP_06116498.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
            hathewayi DSM 13479]
 gi|288864643|gb|EFC96941.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
            hathewayi DSM 13479]
          Length = 367

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 103/190 (54%), Gaps = 17/190 (8%)

Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
            E  E + P  +V+G +KNVT  G FI L    D  + +S +S G VESP+K F  G+ + 
Sbjct: 186  ELFERIHPGDVVEGTIKNVTDFGAFIDLG-GADGLLHISEMSWGRVESPKKVFKAGEKM- 243

Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
             RVL  +    ++ ++LK  ++     + +   +    G++V+G++ R+  +G F+ +E 
Sbjct: 244  -RVLIKDINGDKIALSLKFPETNPWKDAAVKYAA----GNVVVGRVARMTDFGAFVELE- 297

Query: 1480 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNL 1539
              +  L HVS++S DHVD    +   G++++ K++  +++ R+ISL MK+         L
Sbjct: 298  PGVDALLHVSQISRDHVDKPSDVLSIGQEIEAKVVDFNEDDRKISLSMKA---------L 348

Query: 1540 QMSSEEESDE 1549
            QM    + DE
Sbjct: 349  QMQDMAQVDE 358



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 22/255 (8%)

Query: 419 VDRGLGLLLD-----IPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHL 473
           +D GL ++++     IP++ VS      +S  A++E+   E    E +  R RI+G R  
Sbjct: 118 LDGGLSVVVEGARVFIPASLVSDTYEKDLSKYADQEI---EFVITEFNPKRRRIIGDRKQ 174

Query: 474 EGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSE 533
             +A    + +  +  +F    + PG VV+G +  V  FGA +   GG   L  +  MS 
Sbjct: 175 LMVA----RRAEMQKELFER--IHPGDVVEGTIKNVTDFGAFIDL-GGADGLLHISEMSW 227

Query: 534 FEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWI 593
             +  P K FK G ++   +  +   +I ++ K             YA      +  G +
Sbjct: 228 GRVESPKKVFKAGEKMRVLIKDINGDKIALSLKFPETNPWKDAAVKYAAGN---VVVGRV 284

Query: 594 TKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
            ++   G FV    GV      S++  D   +PS +  +GQ ++ +++      R+I+LS
Sbjct: 285 ARMTDFGAFVELEPGVDALLHVSQISRDHVDKPSDVLSIGQEIEAKVVDFNEDDRKISLS 344

Query: 654 F----MMKPTRVSED 664
                M    +V ED
Sbjct: 345 MKALQMQDMAQVDED 359



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 35/189 (18%)

Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
            IHP  VV G + N+ + G F+  LG   G    S+   G+     K +  G+ +R  I 
Sbjct: 190 RIHPGDVVEGTIKNVTDFGAFID-LGGADGLLHISEMSWGRVESPKKVFKAGEKMRVLIK 248

Query: 818 DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
           D+N +  +I LSLK                         +++    + +K+      G+V
Sbjct: 249 DINGD--KIALSLK-----------------------FPETNPWKDAAVKYA----AGNV 279

Query: 878 IEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAER 932
           + G+V    DFG  V  E   D    ++     H       +  G  I+A ++D  + +R
Sbjct: 280 VVGRVARMTDFGAFVELEPGVDALLHVSQISRDHVDKPSDVLSIGQEIEAKVVDFNEDDR 339

Query: 933 LVDLSLKTV 941
            + LS+K +
Sbjct: 340 KISLSMKAL 348



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 750 QQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           Q L      I    +V G V ++ E    +    +  G  PR++  D Q  DL+    VG
Sbjct: 8   QMLEESLKTIRTGEIVTGKVIDVKEDEIVLNIGYKSDGIIPRNEYTDDQNLDLTTVVSVG 67

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASF---MQEHFLLEEKIAML 856
             + + ++ VN   G++ LS K+      +       + H +L  K+A +
Sbjct: 68  DEMEAKVIKVNDGEGQVALSYKRLAADRGNKRLEEAFENHEVLTAKVAAV 117


>gi|227879095|ref|ZP_03996984.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
 gi|256843084|ref|ZP_05548572.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
 gi|256850264|ref|ZP_05555693.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
 gi|262046344|ref|ZP_06019306.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
 gi|293379767|ref|ZP_06625899.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
 gi|295692880|ref|YP_003601490.1| 30S ribosomal protein s1 [Lactobacillus crispatus ST1]
 gi|423318778|ref|ZP_17296655.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
 gi|423321585|ref|ZP_17299456.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
 gi|227861336|gb|EEJ68966.1| 30S ribosomal protein S1 [Lactobacillus crispatus JV-V01]
 gi|256614504|gb|EEU19705.1| 30S ribosomal protein S1 [Lactobacillus crispatus 125-2-CHN]
 gi|256712901|gb|EEU27893.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-1A-US]
 gi|260573215|gb|EEX29773.1| 30S ribosomal protein S1 [Lactobacillus crispatus MV-3A-US]
 gi|290923676|gb|EFE00547.1| 30S ribosomal protein S1 [Lactobacillus crispatus 214-1]
 gi|295030986|emb|CBL50465.1| 30S Ribosomal protein S1 [Lactobacillus crispatus ST1]
 gi|405591865|gb|EKB65324.1| ribosomal protein S1 [Lactobacillus crispatus FB049-03]
 gi|405594274|gb|EKB67691.1| ribosomal protein S1 [Lactobacillus crispatus FB077-07]
          Length = 402

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +V+G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDR 258

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
             R+ +++K ++     Q+     ++L+ GDI  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDIFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQSVKVKVLNIDPSDRRISLSIKAA 354



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 14/170 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV+GKV  + +FGA +   GGV  L  +  +S   + KP    KVG ++  +V+G+ +
Sbjct: 198 GDVVEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDN 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    I  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATADLNEGDIFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPSDRRISLSIKAADSNAS 359



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD+V G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGA 213

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            FI +   +  GL H+SE+S  HVD    + + G+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 93/188 (49%), Gaps = 23/188 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD+V G++S++ +   G  + +G  + G VH +E+    V  P      GQ VK KV+ I
Sbjct: 198  GDVVEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGI 254

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                     + LS++ +                  P    +   DL+   I +G VK++T
Sbjct: 255  DND---RHRISLSIKQT-----------------EPSPFEQATADLNEGDIFEGEVKSLT 294

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
            + G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P  +R+ +++K +
Sbjct: 295  NFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDPSDRRISLSIKAA 354

Query: 1440 DSRTASQS 1447
            DS  +S++
Sbjct: 355  DSNASSEN 362



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 133/317 (41%), Gaps = 34/317 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A      +  D     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEDGNAVEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLIVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             +  G V ++   G FV     + G    S+  +      S    VGQSV+  +L+++ 
Sbjct: 283 GDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQSVKVKVLNIDP 342

Query: 822 ETGRITLSLKQSCCSST 838
              RI+LS+K +  +++
Sbjct: 343 SDRRISLSIKAADSNAS 359


>gi|227893491|ref|ZP_04011296.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
 gi|227864716|gb|EEJ72137.1| 30S ribosomal protein S1 [Lactobacillus ultunensis DSM 16047]
          Length = 402

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 95/169 (56%), Gaps = 6/169 (3%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDR 258

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
             R+ +++K ++     Q+     +NL  GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TANLSEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADN 1538
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++     +DN
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSDN 362



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 14/173 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDN 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATANLSEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS     +  S D+
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAADSNASSDN 362



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGA 213

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            FI +   +  GL H+SE+S  HVD    + +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 92/188 (48%), Gaps = 23/188 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P      GQ VK KV+ I
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVGG-VDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGI 254

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                     + LS++ +                  P    +   +LS   + +G VK++T
Sbjct: 255  DND---RHRISLSIKQT-----------------EPSPFEQATANLSEGDVFEGEVKSLT 294

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
            + G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P  +R+ +++K +
Sbjct: 295  NFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354

Query: 1440 DSRTASQS 1447
            DS  +S +
Sbjct: 355  DSNASSDN 362



 Score = 48.9 bits (115), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 132/317 (41%), Gaps = 34/317 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGKAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  ++ S    
Sbjct: 228 EIS--YKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATANLSE--- 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 822 ETGRITLSLKQSCCSST 838
              RI+LS+K +  +++
Sbjct: 343 SDRRISLSIKAADSNAS 359



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 144/371 (38%), Gaps = 59/371 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R E   D   +   +   G   K  ++      +  N  F    TR+ E    
Sbjct: 44  GVEGVITRREYTSDRNADLRDLVKPGDKFKALVLRRAGGDKE-NGEFFFSVTRLKEREAY 102

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           D L K    G  + G V       ++V V  +G+    +P   +++   + + +K  I  
Sbjct: 103 DKLQKDFEEGKAIEGTVTSSVRGGLLVDVGTRGF----LPASLISNR--YVSDLKPYIGK 156

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 778
             +  ++  +D   + L+LS K  L+   ++   D  AS +    V+ G V  +   G F
Sbjct: 157 TMKL-KITEIDPNKNRLILSHK-DLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAF 214

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           +  +G + G    S+         S     GQ V+  ++ ++++  RI+LS+KQ+  S  
Sbjct: 215 ID-VGGVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDNDRHRISLSIKQTEPSP- 272

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
                      E+  A L                  G V EG+V    +FG  V  E   
Sbjct: 273 ----------FEQATANLSE----------------GDVFEGEVKSLTNFGAFV--EVAD 304

Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANS 951
            + G +   +++   V+        G  ++  +L++  ++R + LS+K         A+S
Sbjct: 305 GIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA----DSNASS 360

Query: 952 NRQAQKKKRKR 962
           +    + +R R
Sbjct: 361 DNHNSRPRRSR 371


>gi|440776925|ref|ZP_20955754.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            S5]
 gi|436722913|gb|ELP46799.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
            S5]
          Length = 435

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 126/257 (49%), Gaps = 28/257 (10%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL++ IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R
Sbjct: 91   GGLILDIGLRGFLPASLVEMRRVRDLQPYIGKE----IEAKIIELDKN---RNNVVLSRR 143

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + L+   S   S+              +  L    I +G V ++ + G F+ L   +D  
Sbjct: 144  AWLEQTQSEVRSEF-------------LNQLQKGAIRKGVVSSIVNFGAFVDLG-GVDGL 189

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +    + + 
Sbjct: 190  VHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKAT-----QEDPWRHFAR 244

Query: 1455 LH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+   VK+
Sbjct: 245  THAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVAVGDDAMVKV 303

Query: 1514 LKVDKEKRRISLGMKSS 1530
            + +D E+RRISL +K +
Sbjct: 304  IDIDLERRRISLSLKQA 320



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G + KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 161 LQKGAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 219

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T          ++A      I  G +TK+   G FVR   G++G  
Sbjct: 220 VDMDRERVSLSLKATQEDPWRHFARTHAIGQ---IVPGKVTKLVPFGAFVRVEEGIEGLV 276

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL       P  +  VG     +++      RRI+LS 
Sbjct: 277 HISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSL 317



 Score = 44.3 bits (103), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 135/342 (39%), Gaps = 50/342 (14%)

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDL 666
           +G  P  EL +    +P+ +  VG  V+  +++      R+ LS      +    + + L
Sbjct: 15  EGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEAL 74

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD- 725
            +    V G V  V    +++ +  +G+   ++        +E   V       G E + 
Sbjct: 75  KEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL--------VEMRRVRDLQPYIGKEIEA 126

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           +++ LD   +N++LS +  L  +  ++ S+  + +   ++  G V +I+  G FV  LG 
Sbjct: 127 KIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVD-LGG 185

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+         S+   VG  V   +LDV+ +  R++LSLK +        F +
Sbjct: 186 VDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLK-ATQEDPWRHFAR 244

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
            H                           IG ++ GKV +   FG  V  EE   + G +
Sbjct: 245 TH--------------------------AIGQIVPGKVTKLVPFGAFVRVEE--GIEGLV 276

Query: 905 THHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLK 939
              +LA   VE        G      ++D+    R + LSLK
Sbjct: 277 HISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLK 318



 Score = 43.9 bits (102), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 114/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R +   +   
Sbjct: 93   LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAW---LEQT 149

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +   + +G I  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 150  QSEVRSEFLNQ-LQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 205

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 206  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 247

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 248  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 305

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 306  IDLERRRISLSLKQAN 321



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 152/373 (40%), Gaps = 48/373 (12%)

Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSY 580
           + + P   +S    V P +   VG E+   VL  + K  R+ ++ K+   +     + + 
Sbjct: 15  EGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEAL 74

Query: 581 AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS--ELGLDPGCEPSSMYHVGQVVKC 638
            E  + +   G + ++ K G  +    G++GF P S  E+      +P    ++G+ ++ 
Sbjct: 75  KEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPASLVEMRRVRDLQP----YIGKEIEA 126

Query: 639 RIM------SSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
           +I+      +++  SRR  L       R    + ++ G++  GVV  +      V +   
Sbjct: 127 KIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDL--- 183

Query: 693 GYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           G   G +    L+  H++H +    V++ G E   ++L +D +   + LS K +  +  +
Sbjct: 184 GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWR 240

Query: 751 QLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
                 +  H    +V G V  ++  G FVR    + G    S+  +       +   VG
Sbjct: 241 HF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVG 296

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL--- 866
                 ++D++ E  RI+LSLKQ+    T+            K  M  S    G+ +   
Sbjct: 297 DDAMVKVIDIDLERRRISLSLKQANEDYTEE-------FDPAKYGMADSYDEQGNYIFPE 349

Query: 867 -------KWVEGF 872
                  +W+EGF
Sbjct: 350 GFDPETNEWLEGF 362


>gi|404215347|ref|YP_006669542.1| Ribosomal protein S1 [Gordonia sp. KTR9]
 gi|403646146|gb|AFR49386.1| Ribosomal protein S1 [Gordonia sp. KTR9]
          Length = 492

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 185/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IG+   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TITSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P+E+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPNEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ + +  + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRV-DEGIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 155/396 (39%), Gaps = 50/396 (12%)

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           + S ++ V    T      AI S+     D  I  G I K+++    +      +G  P 
Sbjct: 6   ITSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPS 65

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSL 672
            EL +    +P+ + +VG  V+  +++      R+ LS      +    + ++L +    
Sbjct: 66  RELSIKHDVDPNEVVNVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEA 125

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
           V G V  V    +++ +  +G+   ++        +E   V       G E + +++ LD
Sbjct: 126 VKGTVIEVVKGGLILDIGLRGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELD 177

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
              +N++LS +  L  +  ++ S+  H +    V  G V +I+  G FV  LG + G   
Sbjct: 178 KNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVH 236

Query: 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 850
            S+         S+   VG  V   +LDV+ +  R++LSLK +        F + H    
Sbjct: 237 VSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH---- 291

Query: 851 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 910
                                  IG ++ GKV +   FG  V  +E   + G +   +LA
Sbjct: 292 ----------------------AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELA 327

Query: 911 GATVE-------SGSVIQAAILDVAKAERLVDLSLK 939
              VE        G      ++D+    R + LSLK
Sbjct: 328 ERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLK 363



 Score = 47.8 bits (112), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVNVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407



 Score = 40.8 bits (94), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 111/259 (42%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +    +
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 197

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                       F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 198  V-------RSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 247

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 248  PSEVVAVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRQFAR 289

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +
Sbjct: 290  THAI--GQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMVK 347

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK ++
Sbjct: 348  VIDIDLERRRISLSLKQAN 366


>gi|423454947|ref|ZP_17431800.1| ribosomal protein S1 [Bacillus cereus BAG5X1-1]
 gi|423472523|ref|ZP_17449266.1| ribosomal protein S1 [Bacillus cereus BAG6O-2]
 gi|401135226|gb|EJQ42829.1| ribosomal protein S1 [Bacillus cereus BAG5X1-1]
 gi|402428055|gb|EJV60153.1| ribosomal protein S1 [Bacillus cereus BAG6O-2]
          Length = 382

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFADY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    IV+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365


>gi|229096089|ref|ZP_04227062.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
 gi|229102201|ref|ZP_04232910.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
 gi|229115045|ref|ZP_04244455.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
 gi|407703968|ref|YP_006827553.1| histidinol-phosphate aminotransferase 1 [Bacillus thuringiensis MC28]
 gi|423380597|ref|ZP_17357881.1| ribosomal protein S1 [Bacillus cereus BAG1O-2]
 gi|423443629|ref|ZP_17420535.1| ribosomal protein S1 [Bacillus cereus BAG4X2-1]
 gi|423446117|ref|ZP_17422996.1| ribosomal protein S1 [Bacillus cereus BAG5O-1]
 gi|423466720|ref|ZP_17443488.1| ribosomal protein S1 [Bacillus cereus BAG6O-1]
 gi|423536117|ref|ZP_17512535.1| ribosomal protein S1 [Bacillus cereus HuB2-9]
 gi|423538639|ref|ZP_17515030.1| ribosomal protein S1 [Bacillus cereus HuB4-10]
 gi|423544877|ref|ZP_17521235.1| ribosomal protein S1 [Bacillus cereus HuB5-5]
 gi|423618255|ref|ZP_17594089.1| ribosomal protein S1 [Bacillus cereus VD115]
 gi|228668185|gb|EEL23617.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
 gi|228681102|gb|EEL35270.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
 gi|228687049|gb|EEL40954.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
 gi|401133210|gb|EJQ40843.1| ribosomal protein S1 [Bacillus cereus BAG5O-1]
 gi|401177223|gb|EJQ84415.1| ribosomal protein S1 [Bacillus cereus HuB4-10]
 gi|401183052|gb|EJQ90169.1| ribosomal protein S1 [Bacillus cereus HuB5-5]
 gi|401253986|gb|EJR60222.1| ribosomal protein S1 [Bacillus cereus VD115]
 gi|401631349|gb|EJS49146.1| ribosomal protein S1 [Bacillus cereus BAG1O-2]
 gi|402412715|gb|EJV45068.1| ribosomal protein S1 [Bacillus cereus BAG4X2-1]
 gi|402415430|gb|EJV47754.1| ribosomal protein S1 [Bacillus cereus BAG6O-1]
 gi|402461542|gb|EJV93255.1| ribosomal protein S1 [Bacillus cereus HuB2-9]
          Length = 382

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 176/383 (45%), Gaps = 53/383 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          S Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFSDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    IV+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKND 1535
            +L+V   ++RISL +K +  +N+
Sbjct: 328  VLEVHVAEKRISLSIKEALEENN 350



 Score = 40.8 bits (94), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 29/356 (8%)

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 663
           +GF P S + +    E  S Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFSDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 721
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDIVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 778
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           V  L  + G    S+  +    + ++   +GQ V+  +L+V+    RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAL 346


>gi|403727272|ref|ZP_10947560.1| 30S ribosomal protein S1 [Gordonia rhizosphera NBRC 16068]
 gi|403204008|dbj|GAB91891.1| 30S ribosomal protein S1 [Gordonia rhizosphera NBRC 16068]
          Length = 489

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 184/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TIASPQVAVNDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +PSE+       ++G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEV------VNVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ + +  + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRV-DEGIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +    +   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVSVSDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS + +VG 
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGD 84

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 85  EVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G E + +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVAVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
             V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 DEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVI-------QA 922
               IG ++ GKV +   FG  V  +E   + G +   +LA   VE    +         
Sbjct: 292 ---AIGQIVPGKVTKLVPFGAFVRVDEG--IEGLVHISELAERHVEVPDQVVSVSDDAMV 346

Query: 923 AILDVAKAERLVDLSLK 939
            ++D+    R + LSLK
Sbjct: 347 KVIDIDLERRRISLSLK 363



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 83/397 (20%), Positives = 159/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVNVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   V       ++D++ E  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAERHVEVPDQVVSVSDDAMVKVIDIDLERRRISLSLKQANEDYTEE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407


>gi|163939412|ref|YP_001644296.1| 30S ribosomal protein S1 [Bacillus weihenstephanensis KBAB4]
 gi|229132404|ref|ZP_04261258.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
 gi|423366663|ref|ZP_17344096.1| ribosomal protein S1 [Bacillus cereus VD142]
 gi|423524601|ref|ZP_17501074.1| ribosomal protein S1 [Bacillus cereus HuA4-10]
 gi|423667281|ref|ZP_17642310.1| ribosomal protein S1 [Bacillus cereus VDM034]
 gi|163861609|gb|ABY42668.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4]
 gi|228651110|gb|EEL07091.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
 gi|401087142|gb|EJP95351.1| ribosomal protein S1 [Bacillus cereus VD142]
 gi|401170444|gb|EJQ77685.1| ribosomal protein S1 [Bacillus cereus HuA4-10]
 gi|401304032|gb|EJS09590.1| ribosomal protein S1 [Bacillus cereus VDM034]
          Length = 382

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFADY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    IV+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365


>gi|315038198|ref|YP_004031766.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
 gi|325956650|ref|YP_004292062.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
 gi|385817537|ref|YP_005853927.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
 gi|312276331|gb|ADQ58971.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL 1112]
 gi|325333215|gb|ADZ07123.1| 30S ribosomal protein S1 [Lactobacillus acidophilus 30SC]
 gi|327183475|gb|AEA31922.1| 30S ribosomal protein S1 [Lactobacillus amylovorus GRL1118]
          Length = 403

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +++G V  +T+ G FI +   +D  V +S +S  +V+ P      G+ V  +V+ ++   
Sbjct: 200  VIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDALKAGQDVKVKVIGIDNDR 258

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
             R+ +++K ++     Q+     +NL+ GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TANLNEGDVFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354



 Score = 73.2 bits (178), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 14/162 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G V++GKV  + +FGA +   GGV  L  +  +S   + KP    K G ++  +V+G+ +
Sbjct: 198 GDVIEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHVDKPSDALKAGQDVKVKVIGIDN 256

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGF 612
            R  I+++ K+T         S + +AT  L    +  G +  +   G FV   +G+QG 
Sbjct: 257 DRHRISLSIKQTEP-------SPFEQATANLNEGDVFEGEVKSLTNFGAFVEVADGIQGL 309

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
              SE+      +PS +  VGQ VK ++++  P+ RRI+LS 
Sbjct: 310 VHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSI 351



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD++ G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGA 213

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            FI +   +  GL H+SE+S  HVD      +AG+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDALKAGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 106/226 (46%), Gaps = 42/226 (18%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD++ G++S++ +   G  + +G  + G VH +E+    V  P      GQ VK KV+ I
Sbjct: 198  GDVIEGKVSRLTNF--GAFIDVG-GVDGLVHISEISYKHVDKPSDALKAGQDVKVKVIGI 254

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                     + LS++ +                  P    +   +L+   + +G VK++T
Sbjct: 255  DND---RHRISLSIKQT-----------------EPSPFEQATANLNEGDVFEGEVKSLT 294

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
            + G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P  +R+ +++K +
Sbjct: 295  NFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPSDRRISLSIKAA 354

Query: 1440 DS-------------RTASQSEIN------NLSNLHVGDIVIGQIK 1466
            DS             R+ +++ +N      N +   +GDI+  Q+K
Sbjct: 355  DSNTSSSDNNSSRPRRSRNENSVNKKYMSDNDNGFALGDIIGDQLK 400



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 129/312 (41%), Gaps = 34/312 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAYDKLQKDFEEGKAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G ++ G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVIEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H       +K G +   +++ +DN+   + LS K +  +  +Q     ++++ 
Sbjct: 228 EIS--YKHVDKPSDALKAGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQA---TANLNE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 822 ETGRITLSLKQS 833
              RI+LS+K +
Sbjct: 343 SDRRISLSIKAA 354


>gi|423676686|ref|ZP_17651625.1| ribosomal protein S1 [Bacillus cereus VDM062]
 gi|401307807|gb|EJS13232.1| ribosomal protein S1 [Bacillus cereus VDM062]
          Length = 382

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFADY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    IV+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNTDSA 365


>gi|58337265|ref|YP_193850.1| 30S ribosomal protein S1 [Lactobacillus acidophilus NCFM]
 gi|227903850|ref|ZP_04021655.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
 gi|58254582|gb|AAV42819.1| 30S Ribosomal protein S1 [Lactobacillus acidophilus NCFM]
 gi|227868737|gb|EEJ76158.1| 30S ribosomal protein S1 [Lactobacillus acidophilus ATCC 4796]
          Length = 403

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +V+G V  +T+ G FI +   +D  V +S +S  +V+ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGSFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDR 258

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
             R+ +++K ++     Q+     ++L+ GDI  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TADLNEGDIFEGEVKSLTNFGAFVEVAD-GIQGLVHVS 313

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E+S  HVD    + + G+ VKVK+L +D   RRISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQTVKVKVLNIDPNDRRISLSIKAA 354



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 10/160 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV+GKV  + +FG+ +   GGV  L  +  +S   + KP    KVG ++  +V+G+ +
Sbjct: 198 GDVVEGKVSRLTNFGSFIDV-GGVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDN 256

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAP 614
            R    H+ +L   K    S + +AT  L    I  G +  +   G FV   +G+QG   
Sbjct: 257 DR----HRISL-SIKQTEPSPFEQATADLNEGDIFEGEVKSLTNFGAFVEVADGIQGLVH 311

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            SE+      +PS +  VGQ VK ++++  P  RRI+LS 
Sbjct: 312 VSEISNKHVDKPSDVLKVGQTVKVKVLNIDPNDRRISLSI 351



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD+V G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGS 213

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            FI +   +  GL H+SE+S  HVD    + + G+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQT 268



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 106/226 (46%), Gaps = 42/226 (18%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD+V G++S++ +   G  + +G  + G VH +E+    V  P      GQ VK KV+ I
Sbjct: 198  GDVVEGKVSRLTNF--GSFIDVG-GVDGLVHISEISYKHVDKPSDVLKVGQDVKVKVIGI 254

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                     + LS++ +                  P    +   DL+   I +G VK++T
Sbjct: 255  DND---RHRISLSIKQT-----------------EPSPFEQATADLNEGDIFEGEVKSLT 294

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
            + G F+ ++  +   V +S +S+ +V+ P     +G+ V  +VL+++P  +R+ +++K +
Sbjct: 295  NFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDPNDRRISLSIKAA 354

Query: 1440 DS-------------RTASQSEIN------NLSNLHVGDIVIGQIK 1466
            DS             R+ +++ +N      N +   +GDI+  Q+K
Sbjct: 355  DSNSSSSDNHNSRPRRSRNENTVNKKYMSDNDNGFALGDIIGDQLK 400



 Score = 48.5 bits (114), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 130/312 (41%), Gaps = 34/312 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           ++VKPG KFK    LV R  G   +        T +K + A      +  +     G +T
Sbjct: 64  DLVKPGDKFKA---LVLRRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        S+ Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SNRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGSFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H      V+K G +   +++ +DN+   + LS K +  +  +Q  +D   ++ 
Sbjct: 228 EIS--YKHVDKPSDVLKVGQDVKVKVIGIDNDRHRISLSIKQTEPSPFEQATAD---LNE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             +  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDIFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVGQTVKVKVLNIDP 342

Query: 822 ETGRITLSLKQS 833
              RI+LS+K +
Sbjct: 343 NDRRISLSIKAA 354


>gi|89069005|ref|ZP_01156386.1| 30S ribosomal protein S1 [Oceanicola granulosus HTCC2516]
 gi|89045374|gb|EAR51439.1| 30S ribosomal protein S1 [Oceanicola granulosus HTCC2516]
          Length = 561

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 177/401 (44%), Gaps = 57/401 (14%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ V G V  +    A + +   +   L + D A+     PSE+        IG+ V   
Sbjct: 197  GQAVDGVVKNITEYGAFVDLG-GVDGLLHVTDMAWRRVNHPSEI------LSIGETVKVQ 249

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDK-TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
            V+ INKE   + L ++  QD   D  TV    D++ T         GR++ I     G  
Sbjct: 250  VIKINKETHRISLGMKQLQDDPWDTVTVKYPLDSVHT---------GRVTNITDY--GAF 298

Query: 1279 VQIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            V++ P + G VH +E+    KN+     +S     Q V+  VLEI    R         R
Sbjct: 299  VELEPGVEGLVHVSEMSWTKKNVHPGKIVS---TSQEVEVMVLEIDEAKR---------R 346

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
             SL G+  T  +      +T   H E  E       V+G VKN+T  G F+ L   +D  
Sbjct: 347  VSL-GLKQTMRNPWEVFAET---HPEGTE-------VEGEVKNITEFGLFVGLEGDIDGM 395

Query: 1395 VLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1453
            V LS+L+ +G  E    ++  G +V  +VL V+   +R+ +++K  D    +++    + 
Sbjct: 396  VHLSDLTWEGRGEDVIGDYRKGDVVKAKVLEVDTDKERISLSIKALDGDPFAEA----VG 451

Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             +  G ++   + ++E  G  I +E   +      S+LS D  +     ++ G+KV V++
Sbjct: 452  GVKRGSVITVNVTKIEDGG--IEVEYEGMKSFIRRSDLSRDRSEQRPERFQPGDKVDVRV 509

Query: 1514 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEV 1554
              +D + RR+ L +K+     + + +Q     +S  ++ ++
Sbjct: 510  TNIDPKTRRLGLSIKAREIAEEKEAVQQYGSSDSGASLGDI 550



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 4/89 (4%)

Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
            +SR   ++E+  + NLH G  V G +K +  YG F+ +   +  GL HV++++   V++ 
Sbjct: 181  ESRAEQRAEV--IGNLHEGQAVDGVVKNITEYGAFVDLGGVD--GLLHVTDMAWRRVNHP 236

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
              I   GE VKV+++K++KE  RISLGMK
Sbjct: 237  SEILSIGETVKVQVIKINKETHRISLGMK 265



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 11/177 (6%)

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            +  E I +L     V G VKN+T  G F+ L   +D  + +++++   V  P +   IG+
Sbjct: 186  QRAEVIGNLHEGQAVDGVVKNITEYGAFVDLG-GVDGLLHVTDMAWRRVNHPSEILSIGE 244

Query: 1417 LVAGRVLSVEPLSKRVEVTLKT-SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1475
             V  +V+ +   + R+ + +K   D    + +    L ++H      G++  +  YG F+
Sbjct: 245  TVKVQVIKINKETHRISLGMKQLQDDPWDTVTVKYPLDSVHT-----GRVTNITDYGAFV 299

Query: 1476 TIENTNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             +E   + GL HVSE+S     N+    I    ++V+V +L++D+ KRR+SLG+K +
Sbjct: 300  ELE-PGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVEVMVLEIDEAKRRVSLGLKQT 354



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 39/223 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           Q+L +D    N+++S +  L  S A+Q      ++H    V G V NI E G FV  LG 
Sbjct: 160 QILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLHEGQAVDGVVKNITEYGAFVD-LGG 218

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    +     +    S+   +G++V+  ++ +N ET RI+L +KQ            
Sbjct: 219 VDGLLHVTDMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQ------------ 266

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
                      LQ    +   +K    + + SV  G+V    D+G  V  E    V G +
Sbjct: 267 -----------LQDDPWDTVTVK----YPLDSVHTGRVTNITDYGAFVELE--PGVEGLV 309

Query: 905 THHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLK 939
              +++        G  V +   ++  +L++ +A+R V L LK
Sbjct: 310 HVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDEAKRRVSLGLK 352



 Score = 48.9 bits (115), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 108/472 (22%), Positives = 178/472 (37%), Gaps = 69/472 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK--KFKVGAELVFRVLGV 556
           G VVKG+VIAV++  AI+     ++    L      E   PG+  +  VG E+   +  V
Sbjct: 26  GSVVKGRVIAVEAGQAIIDVGYKMEGRVDLK-----EFANPGEAPEIGVGDEVEVYLRNV 80

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           ++ R      + + + + A         D     G I    K G F     G   F P S
Sbjct: 81  ENARGEAVISREMARREEAWDRLEKAYADEERVEGAIFGRVK-GGFTVDLGGAVAFLPGS 139

Query: 617 ELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSL 672
           ++ + P  +   +  + Q  +     R   +I  SRR  L       R      +  G  
Sbjct: 140 QVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLHEGQA 199

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHATVMKSVIKPGYEFDQLL 728
           V GVV  +T     V +   G   G +    +A    +H      +   +K      Q++
Sbjct: 200 VDGVVKNITEYGAFVDL---GGVDGLLHVTDMAWRRVNHPSEILSIGETVKV-----QVI 251

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHI-HPNSVVH-GYVCNIIETGCFVRFLGRLT 786
            ++ E+  + L  K       Q  P D   + +P   VH G V NI + G FV     + 
Sbjct: 252 KINKETHRISLGMK-----QLQDDPWDTVTVKYPLDSVHTGRVTNITDYGAFVELEPGVE 306

Query: 787 GFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
           G    S+ +   +     K     Q V   +L+++    R++L LKQ+  +  +  F + 
Sbjct: 307 GLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDEAKRRVSLGLKQTMRNPWEV-FAET 365

Query: 846 HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 905
           H                G+E            +EG+V    +FG+ V  E   D+ G + 
Sbjct: 366 H--------------PEGTE------------VEGEVKNITEFGLFVGLE--GDIDGMVH 397

Query: 906 HHQLA----GATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
              L     G  V      G V++A +L+V   +  + LS+K +  D F EA
Sbjct: 398 LSDLTWEGRGEDVIGDYRKGDVVKAKVLEVDTDKERISLSIKALDGDPFAEA 449


>gi|423625417|ref|ZP_17601195.1| ribosomal protein S1 [Bacillus cereus VD148]
 gi|401255097|gb|EJR61322.1| ribosomal protein S1 [Bacillus cereus VD148]
          Length = 382

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 176/383 (45%), Gaps = 53/383 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQGKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          S Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFSDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    IV+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKND 1535
            +L+V   ++RISL +K +  +N+
Sbjct: 328  VLEVHVAEKRISLSIKEALEENN 350



 Score = 41.2 bits (95), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 29/356 (8%)

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQGKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 663
           +GF P S + +    E  S Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFSDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 721
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDIVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 778
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           V  L  + G    S+  +    + ++   +GQ V+  +L+V+    RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAL 346


>gi|255324624|ref|ZP_05365741.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
 gi|311740509|ref|ZP_07714336.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
            33035]
 gi|255298530|gb|EET77830.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
 gi|311304029|gb|EFQ80105.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
            33035]
          Length = 486

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 174/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +     P E+ E      +G  V   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVE------VGDEVDAL 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELQAKEEPVTGTVIEVVKG--GLIL 138

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +   +P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG----QELEAKIIELDKQRN---NVVLSRRAYLEQ 191

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 192  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 237

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H VG
Sbjct: 238  LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAVG 292

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G++V VK++ +D 
Sbjct: 293  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDL 351

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 352  ERRRISLSVKQA 363



 Score = 59.7 bits (143), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           ++G    SEL       P  +  VGQ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLS 359



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEVDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEEL-QAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAYLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+          +   VGQ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLSVKQA-----DEDYTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDPETNEWKEGF 405


>gi|205373820|ref|ZP_03226622.1| 30S ribosomal protein S1 [Bacillus coahuilensis m4-4]
          Length = 299

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 145/290 (50%), Gaps = 30/290 (10%)

Query: 1241 ISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
            +S + VD     + M+    EG++    +  ++ G  GLVV +G  + G V  + +++  
Sbjct: 2    LSKRKVDAEKAWEEMERRYQEGEVFEAEVKDVVKG--GLVVDLG--VRGFVPASLVEDYY 57

Query: 1299 VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1358
            V D  S Y        K++E+ +         LS R+ ++         L          
Sbjct: 58   VED-FSDYKNTSLT-FKIVELDQEKNRLI---LSHRAVVESEKEQKKKQL---------- 102

Query: 1359 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1418
               +E L  + +++G V+ +T  G F+ +   +D  V +S LS  +VE P      G+ V
Sbjct: 103  ---LESLKQDQVLEGTVQRITDFGAFVDIG-GVDGLVHISQLSHEHVEKPTDVVAEGQAV 158

Query: 1419 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1478
              +VLSV+  ++R+ +++K  ++     SEI N ++   G ++ G++KR+ SYG FI + 
Sbjct: 159  KVKVLSVDRDNERISLSIK--ETLPGPWSEIANRASK--GSVLEGEVKRIVSYGAFIEL- 213

Query: 1479 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
               + GL H+S+LS  HV     + + G+ VKVK+L V+++ +R+SL +K
Sbjct: 214  FPGVEGLVHISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDDQRLSLSIK 263



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
            L +L    ++ G ++R+  +G F+ I   +  GL H+S+LS +HV+    +   G+ VKV
Sbjct: 103  LESLKQDQVLEGTVQRITDFGAFVDIGGVD--GLVHISQLSHEHVEKPTDVVAEGQAVKV 160

Query: 1512 KILKVDKEKRRISLGMKSS 1530
            K+L VD++  RISL +K +
Sbjct: 161  KVLSVDRDNERISLSIKET 179



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K   V++G V  +  FGA V   GGV  L  +  +S   + KP      G  +  +VL 
Sbjct: 106 LKQDQVLEGTVQRITDFGAFVDI-GGVDGLVHISQLSHEHVEKPTDVVAEGQAVKVKVLS 164

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V   ++RI+++ K+TL      I +  ++ +   +  G + +I  +G F+  + GV+G  
Sbjct: 165 VDRDNERISLSIKETLPGPWSEIANRASKGS---VLEGEVKRIVSYGAFIELFPGVEGLV 221

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S+L       P  +   GQ VK +++      +R++LS 
Sbjct: 222 HISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDDQRLSLSI 262



 Score = 43.9 bits (102), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 3/107 (2%)

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           ++L +D ++  + LS K +L     ++ + AS     SV+ G V  I+  G F+     +
Sbjct: 161 KVLSVDRDNERISLSIKETLPGPWSEIANRAS---KGSVLEGEVKRIVSYGAFIELFPGV 217

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            G    S+          +    GQSV+  +LDVN +  R++LS+K+
Sbjct: 218 EGLVHISQLSHKHVGTPHEVLQEGQSVKVKVLDVNEDDQRLSLSIKE 264


>gi|357010264|ref|ZP_09075263.1| RNA binding S1 domain-containing protein [Paenibacillus elgii B69]
          Length = 405

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 180/367 (49%), Gaps = 37/367 (10%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  VTG V KVD + A++ +       + + +      +L   +    +G+ +   VL+I
Sbjct: 31   GDIVTGKVIKVDADQAVVDVGYKYDGIVSVRE--LSSVQLDNAEEIVQVGQEIELKVLTI 88

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP 1283
            +  K+ L L  R      S+K    S + +   +    I+  ++++++ G  GLVV +G 
Sbjct: 89   DDNKEKLVLSKRAID---SEK----SWEKLAADMENKTILEAKVAEVVKG--GLVVDVG- 138

Query: 1284 HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSST 1343
             L G V  + ++   V D  S Y +G+ ++ +V E+ R       V LS +  LD     
Sbjct: 139  -LRGFVPASMVERTFVED-FSDY-KGRTLRLRVKEMDRE---KNKVILSQKDVLD----- 187

Query: 1344 NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG 1403
               +L T      K  E I  LS    + G V+ +T  G F+ +   +D  V +S ++  
Sbjct: 188  --EELET------KKQETISKLSVGQELMGTVQRLTQFGAFVDIG-GVDGLVHISEMAWH 238

Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
            +VE   +    G  V  +VL ++P ++R+ +++K +  +      + N   +++GDIV G
Sbjct: 239  HVEHASEVVKEGDQVRVQVLKLDPANERISLSIKAT--QPGPWESVKN--KINIGDIVTG 294

Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
             +KR+  +G FI +    + GL H+S+++  H+     + + G++V+VK+L ++  ++RI
Sbjct: 295  TVKRLVQFGAFIEV-APGVEGLVHISQIAHRHIATPFEVLKEGQEVQVKVLDMNPGEKRI 353

Query: 1524 SLGMKSS 1530
            SL +K +
Sbjct: 354  SLSIKET 360



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 126/279 (45%), Gaps = 33/279 (11%)

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
            T I +GDIV G++ K+ +     VV +G    G V   EL ++ + +       GQ ++ 
Sbjct: 26   TIIKKGDIVTGKVIKVDADQA--VVDVGYKYDGIVSVRELSSVQLDNAEEIVQVGQEIEL 83

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE-DLSPNMIVQG 1373
            KVL I                  D       S  + D +   K  EK+  D+    I++ 
Sbjct: 84   KVLTID-----------------DNKEKLVLSKRAIDSE---KSWEKLAADMENKTILEA 123

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP--IGKLVAGRVLSVEPLSKR 1431
             V  V   G  + +   L   V  S +   +VE    +F    G+ +  RV  ++    +
Sbjct: 124  KVAEVVKGGLVVDVG--LRGFVPASMVERTFVE----DFSDYKGRTLRLRVKEMDREKNK 177

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
            V ++ K          +   +S L VG  ++G ++R+  +G F+ I   +  GL H+SE+
Sbjct: 178  VILSQKDVLDEELETKKQETISKLSVGQELMGTVQRLTQFGAFVDIGGVD--GLVHISEM 235

Query: 1492 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  HV++   + + G++V+V++LK+D    RISL +K++
Sbjct: 236  AWHHVEHASEVVKEGDQVRVQVLKLDPANERISLSIKAT 274



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 156/354 (44%), Gaps = 37/354 (10%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G +V GKVI VD+  A+V        +  +  +S  ++    +  +VG E+  +VL 
Sbjct: 28  IKKGDIVTGKVIKVDADQAVVDVGYKYDGIVSVRELSSVQLDNAEEIVQVGQEIELKVLT 87

Query: 556 VKSKRITVTHKKTLVKSKLAILSS------YAEATDRLITHGWITKIEKHGCFVRFYNGV 609
           +        +K+ LV SK AI S        A+  ++ I    + ++ K G  V    G+
Sbjct: 88  IDD------NKEKLVLSKRAIDSEKSWEKLAADMENKTILEAKVAEVVKGGLVVDV--GL 139

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRI------MSSIPASRRINLSFMMKPTRVSE 663
           +GF P S +      E  S Y  G+ ++ R+       + +  S++  L   ++  +   
Sbjct: 140 RGFVPAS-MVERTFVEDFSDYK-GRTLRLRVKEMDREKNKVILSQKDVLDEELETKKQET 197

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGY 722
              + +G  + G V  +T     V +   G   G +    +A  H+EHA+    V+K G 
Sbjct: 198 ISKLSVGQELMGTVQRLTQFGAFVDI---GGVDGLVHISEMAWHHVEHAS---EVVKEGD 251

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFV 779
           +   Q+L LD  +  + LS     I + Q  P ++  + I+   +V G V  +++ G F+
Sbjct: 252 QVRVQVLKLDPANERISLS-----IKATQPGPWESVKNKINIGDIVTGTVKRLVQFGAFI 306

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
                + G    S+      A   +    GQ V+  +LD+N    RI+LS+K++
Sbjct: 307 EVAPGVEGLVHISQIAHRHIATPFEVLKEGQEVQVKVLDMNPGEKRISLSIKET 360



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 1441 SRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
            S   SQ E + N++ +  GDIV G++ +V++    + +      G+  V ELS   +DN 
Sbjct: 13   SAEVSQEESMANVTIIKKGDIVTGKVIKVDADQAVVDV-GYKYDGIVSVRELSSVQLDNA 71

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            E I + G+++++K+L +D  K ++ L  ++
Sbjct: 72   EEIVQVGQEIELKVLTIDDNKEKLVLSKRA 101



 Score = 41.2 bits (95), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
             V IS++A   V    +  KEG  VRV++L         +  +KA+         + + 
Sbjct: 228 GLVHISEMAWHHVEHASEVVKEGDQVRVQVLKLDPANERISLSIKATQPGPWESVKNKIN 287

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
            G +V G V  +  FGA ++   GV+ L  +  ++   I  P +  K G E+  +VL + 
Sbjct: 288 IGDIVTGTVKRLVQFGAFIEVAPGVEGLVHISQIAHRHIATPFEVLKEGQEVQVKVLDMN 347

Query: 558 --SKRITVTHKKT 568
              KRI+++ K+T
Sbjct: 348 PGEKRISLSIKET 360


>gi|333990445|ref|YP_004523059.1| 30S ribosomal protein S1 [Mycobacterium sp. JDM601]
 gi|333486413|gb|AEF35805.1| ribosomal protein S1 RpsA [Mycobacterium sp. JDM601]
          Length = 479

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 184/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + V++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVTSPQVAVNDIGSAEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGRE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  AVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G IV G++ ++  +G F+ +E   + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D ++RRISL +K +
Sbjct: 323  ISELAEQHVEVPDQVVAVGDDAMVKVIDIDLDRRRISLSLKQA 365



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 149/382 (39%), Gaps = 50/382 (13%)

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
            D  I  G I K+++    +      +G  P  EL +    +P  +  VG  V+  +++ 
Sbjct: 34  NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLTK 93

Query: 644 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
                R+ LS      +    + ++L +    V G V  V    +++ +  +G+   ++ 
Sbjct: 94  EDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL- 152

Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
                  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + 
Sbjct: 153 -------VEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           +   +V  G V +I+  G FV  LG + G    S+         S+   VG  V   +LD
Sbjct: 206 LQKGAVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLD 264

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           V+ +  R++LSLK +        F + H                           IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAE 931
            GKV +   FG  V  EE   + G +   +LA   VE        G      ++D+    
Sbjct: 298 PGKVTKLVPFGAFVRVEE--GIEGLVHISELAEQHVEVPDQVVAVGDDAMVKVIDIDLDR 355

Query: 932 RLVDLSLKTVFIDRFREANSNR 953
           R + LSLK    D   E + ++
Sbjct: 356 RRISLSLKQANEDYTEEFDPSK 377



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 162/397 (40%), Gaps = 48/397 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R    + ++
Sbjct: 152 LVEMRRVRDLQP----YIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G++  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 208 KGAVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +      +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            G    S+  +       +   VG      ++D++ +  RI+LSLKQ+    T+      
Sbjct: 318 EGLVHISELAEQHVEVPDQVVAVGDDAMVKVIDIDLDRRRISLSLKQANEDYTEE----- 372

Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
                 K  M  S    G+ +          +W+EGF
Sbjct: 373 --FDPSKYGMADSYDEQGNYIFPEGFDAETNEWIEGF 407



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 114/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IG+ +   ++ ++K +  + L  R +   +   
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRAW---LEQT 194

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ ++ +   + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 195  QSEVRSEFLNQ-LQKGAVRKGVVSSIVNF--GAFVDLGG-VDGLVHVSELSWKHIDHPSE 250

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
                G  V  +VL++         V LSL+++ +                P +H  +   
Sbjct: 251  VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +V+ 
Sbjct: 293  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAEQHVEVPDQVVAVGDDAMVKVID 350

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 351  IDLDRRRISLSLKQAN 366


>gi|302528116|ref|ZP_07280458.1| ribosomal protein S1 [Streptomyces sp. AA4]
 gi|302437011|gb|EFL08827.1| ribosomal protein S1 [Streptomyces sp. AA4]
          Length = 497

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 184/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 18   VAVNDIGSEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 77

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 78   KHDVDPAEV------VAVGDEVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 124

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                + + V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 125  ELKEKDEPVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEA 178

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+   S   S+              +  L+   + +G 
Sbjct: 179  KIIELDKNRN---NVVLSRRAYLEQTQSEVRSEF-------------LNALAKGQVRKGV 222

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 223  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSL 281

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H+SEL+E
Sbjct: 282  SLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAE 335

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E + +    V VK++ +D E+RRISL +K +
Sbjct: 336  RHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQA 372



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 147/365 (40%), Gaps = 52/365 (14%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
           I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++      
Sbjct: 45  IVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKEDKE 104

Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
            R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P    
Sbjct: 105 GRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP---- 156

Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
           A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +   
Sbjct: 157 ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALAKG 216

Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
            V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV+ +
Sbjct: 217 QVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 275

Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
             R++LSLK +        F + H                           IG ++ GKV
Sbjct: 276 RERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVPGKV 308

Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSVIQAAILDVAKAERLV 934
            +   FG  V  EE   + G +   +LA   VE        +G V+   ++D+    R +
Sbjct: 309 TKLVPFGAFVRVEE--GIEGLVHISELAERHVEIPEQVVQVNGDVM-VKVIDIDLERRRI 365

Query: 935 DLSLK 939
            LSLK
Sbjct: 366 SLSLK 370



 Score = 46.6 bits (109), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 148/353 (41%), Gaps = 31/353 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVAVGDEVEALVLQKED 102

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
            G    S+  +       +   V   V   ++D++ E  RI+LSLKQ+    T
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQANEGVT 377



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 116/266 (43%), Gaps = 34/266 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +     ++
Sbjct: 145  LILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY----LEQ 200

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 201  TQSEVRSEFLNALAKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 257

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++ +                P +   +   
Sbjct: 258  VVEVGQEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRQFARTHA 299

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +V+ 
Sbjct: 300  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVMVKVID 357

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEIN 1450
            ++   +R+ ++LK ++     ++E +
Sbjct: 358  IDLERRRISLSLKQANEGVTPETEFD 383


>gi|331697654|ref|YP_004333893.1| RNA binding S1 domain-containing protein [Pseudonocardia
            dioxanivorans CB1190]
 gi|326952343|gb|AEA26040.1| RNA binding S1 domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 487

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 131/258 (50%), Gaps = 30/258 (11%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL++ IG   +      E++ +    P  G    + ++ K++E+ +      +V LS R
Sbjct: 139  GGLILDIGLRGFLPASLVEMRRVRDLQPYVG----RKIEAKIIELDKN---RNNVVLSRR 191

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + L+   S   S+              +  L+   + +G V +V + G F+ L   +D  
Sbjct: 192  AWLEQTQSEVRSEF-------------LNQLARGQVRKGVVSSVVNFGAFVDLG-GVDGL 237

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL-S 1453
            V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK      A+Q +   L +
Sbjct: 238  VHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLK------ATQEDPWRLYA 291

Query: 1454 NLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + + G+   VK
Sbjct: 292  RTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVGDDAMVK 350

Query: 1513 ILKVDKEKRRISLGMKSS 1530
            ++ +D ++RRISL +K +
Sbjct: 351  VIDIDLDRRRISLSLKQA 368



 Score = 41.6 bits (96), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 152/359 (42%), Gaps = 34/359 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +  +VG  +   VL  + 
Sbjct: 39  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVEVGEFVEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  EA + +   G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEALKEADEPV--EGTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 155 LVEMRRVRDLQP----YVGRKIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLA 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  V      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 RGQVRKGVVSSVVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 265 VLDVDLDRERVSLSLK-----ATQEDPWRLYARTHAIGQIVPGKVTKLVPFGAFVRVEEG 319

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 842
           + G    S+  +       +   VG      ++D++ +  RI+LSLKQ+    T D  F
Sbjct: 320 IEGLVHISELAERHVEIPEQVVQVGDDAMVKVIDIDLDRRRISLSLKQANEGMTVDTEF 378


>gi|374990744|ref|YP_004966239.1| 30S ribosomal protein S1 [Streptomyces bingchenggensis BCW-1]
 gi|297161396|gb|ADI11108.1| 30S ribosomal protein S1 [Streptomyces bingchenggensis BCW-1]
          Length = 500

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-GIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 45.1 bits (105), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 127/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQI--GQVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQAN 369


>gi|345014360|ref|YP_004816714.1| RNA binding S1 domain-containing protein [Streptomyces violaceusniger
            Tu 4113]
 gi|344040709|gb|AEM86434.1| RNA binding S1 domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 504

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGSEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-GIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 45.1 bits (105), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 127/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQI--GQVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQAN 369


>gi|94987197|ref|YP_595130.1| 30S ribosomal protein S1 [Lawsonia intracellularis PHE/MN1-00]
 gi|442556035|ref|YP_007365860.1| 30S ribosomal protein S1 [Lawsonia intracellularis N343]
 gi|94731446|emb|CAJ54809.1| ribosomal protein S1 [Lawsonia intracellularis PHE/MN1-00]
 gi|441493482|gb|AGC50176.1| 30S ribosomal protein S1 [Lawsonia intracellularis N343]
          Length = 574

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 169/370 (45%), Gaps = 40/370 (10%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            +S GQ V G V  V  E+ +      L   L I D +++   ++  +   ++G+ +   V
Sbjct: 204  ISEGQVVVGKVKNV-TEYGVFVDLGGLDGLLHITDMSWK--RIRHPREMVNLGQELELKV 260

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
            LS +KE + + L L+     + D   DI+    +T  H G     +++ ++    G+ V+
Sbjct: 261  LSFDKENQKVSLGLKQL---VPDPWQDITERFPETSHHVG-----KVTNLVDY--GVFVE 310

Query: 1281 IGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
            +   + G VH +E+     +  P     +G  V+  +L I +  +         R SL G
Sbjct: 311  LESGVEGLVHISEMSWTRKLRHPSQMVHQGDEVEVVILGIDQDKK---------RISL-G 360

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
            M              P       E      I++G VKN+T  G FI +   +D  + +S+
Sbjct: 361  MKQVK----------PNPWELVGEKYPEGTILEGVVKNITEFGMFIGIEDGIDGLIHVSD 410

Query: 1400 LS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1458
            +S    V  P + F +G  V  +VL+V+  +++  + +K       S    N  S   VG
Sbjct: 411  ISWTKKVRHPNELFKVGDTVQAKVLTVDQENEKFTLGIKQLTEDPWS----NAPSVYPVG 466

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G I  +  +GLF+ +E   + GL HVSELS   + +   IY+ GE+++ KI+ V  
Sbjct: 467  GIVKGIITNITDFGLFVEVEE-GIEGLVHVSELSSKKIKSPSEIYKDGEEIQAKIIHVSA 525

Query: 1519 EKRRISLGMK 1528
            E+RR+ L +K
Sbjct: 526  EERRLGLSIK 535



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 95/175 (54%), Gaps = 11/175 (6%)

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            K  + ++ +S   +V G VKNVT  G F+ L   LD  + ++++S   +  P +   +G+
Sbjct: 196  KRQDLLQTISEGQVVVGKVKNVTEYGVFVDLG-GLDGLLHITDMSWKRIRHPREMVNLGQ 254

Query: 1417 LVAGRVLSVEPLSKRVEVTLK--TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLF 1474
             +  +VLS +  +++V + LK    D            S+ HVG     ++  +  YG+F
Sbjct: 255  ELELKVLSFDKENQKVSLGLKQLVPDPWQDITERFPETSH-HVG-----KVTNLVDYGVF 308

Query: 1475 ITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            + +E + + GL H+SE+S    + +   +   G++V+V IL +D++K+RISLGMK
Sbjct: 309  VELE-SGVEGLVHISEMSWTRKLRHPSQMVHQGDEVEVVILGIDQDKKRISLGMK 362



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 148/353 (41%), Gaps = 45/353 (12%)

Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVD-IFHLQNTFPTTNWKNDYNQHKKVNA----- 375
           G +V  +V+++ E GV +       G +D + H+ +     +WK   +  + VN      
Sbjct: 207 GQVVVGKVKNVTEYGVFVDL-----GGLDGLLHITDM----SWKRIRHPREMVNLGQELE 257

Query: 376 -RILFVDPTSRAVGLTL-----NPYL-LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLD 428
            ++L  D  ++ V L L     +P+  +  R P +   VG + +      VD G+ + L+
Sbjct: 258 LKVLSFDKENQKVSLGLKQLVPDPWQDITERFPETSHHVGKVTN-----LVDYGVFVELE 312

Query: 429 IPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGFRHLE---GLATGILKAS 484
                      V IS+++   ++R   +   +G  V V ILG    +    L    +K +
Sbjct: 313 -----SGVEGLVHISEMSWTRKLRHPSQMVHQGDEVEVVILGIDQDKKRISLGMKQVKPN 367

Query: 485 AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKF 543
            +E           G +++G V  +  FG  +    G+  L  +  +S  + V+ P + F
Sbjct: 368 PWE---LVGEKYPEGTILEGVVKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNELF 424

Query: 544 KVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGC 601
           KVG  +  +VL V  ++++ T+  K+          S Y       I  G IT I   G 
Sbjct: 425 KVGDTVQAKVLTVDQENEKFTLGIKQLTEDPWSNAPSVYPVGG---IVKGIITNITDFGL 481

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           FV    G++G    SEL       PS +Y  G+ ++ +I+      RR+ LS 
Sbjct: 482 FVEVEEGIEGLVHVSELSSKKIKSPSEIYKDGEEIQAKIIHVSAEERRLGLSI 534



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 93/173 (53%), Gaps = 10/173 (5%)

Query: 1359 LEKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1417
             +++EDL   N I++G +     KG + +  R ++A +  S++    V  P+ +  + + 
Sbjct: 110  FDQLEDLQEKNGIIKGRIVRRI-KGGYTIDLRGVEAFLPGSHVDLRPV--PDMDMLVNQE 166

Query: 1418 VAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1475
               RVL +      V V+ +    + R + + ++  L  +  G +V+G++K V  YG+F+
Sbjct: 167  YEFRVLKINRRRSNVIVSRRVLLEEERDSKRQDL--LQTISEGQVVVGKVKNVTEYGVFV 224

Query: 1476 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             +    L GL H++++S   + +   +   G+++++K+L  DKE +++SLG+K
Sbjct: 225  DL--GGLDGLLHITDMSWKRIRHPREMVNLGQELELKVLSFDKENQKVSLGLK 275


>gi|15618235|ref|NP_224520.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae CWL029]
 gi|15835850|ref|NP_300374.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae J138]
 gi|16752723|ref|NP_444990.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae AR39]
 gi|33241660|ref|NP_876601.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae TW-183]
 gi|6707741|sp|Q9Z8M3.1|RS1_CHLPN RecName: Full=30S ribosomal protein S1
 gi|4376592|gb|AAD18464.1| S1 Ribosomal Protein [Chlamydophila pneumoniae CWL029]
 gi|7189364|gb|AAF38281.1| ribosomal protein S1 [Chlamydophila pneumoniae AR39]
 gi|8978689|dbj|BAA98525.1| S1 ribosomal protein [Chlamydophila pneumoniae J138]
 gi|33236169|gb|AAP98258.1| ribosomal protein S1 [Chlamydophila pneumoniae TW-183]
          Length = 580

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 178/390 (45%), Gaps = 62/390 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            +SIG+   G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVLGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
                G  ++I   + G +H +E+   KNI   DP    ++G  V+  VL I +       
Sbjct: 317  PY--GAFIEIEEGIEGLIHISEMSWVKNIV--DPSEVVNKGDEVEAIVLSIQKD-----E 367

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
             ++SL     G+  T  +        P  ++E  E     + V   +KN+T+ G F+ L 
Sbjct: 368  GKISL-----GLKQTERN--------PWDNIE--EKYPIGLHVNAEIKNLTNYGAFVELE 412

Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +K   S   ++ 
Sbjct: 413  PGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNEI 472

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
            E    +    G ++ G + ++ ++G F+ ++N  + GL HVSELS+     IE I   GE
Sbjct: 473  E----AMFPAGTVISGVVTKITAFGAFVELQN-GIEGLIHVSELSDKPFAKIEDIISIGE 527

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDAD 1537
             V  K++K+D + +++SL +K     N  D
Sbjct: 528  NVSAKVIKLDPDHKKVSLSVKEYLADNAYD 557



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 143/288 (49%), Gaps = 38/288 (13%)

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKC 1314
             EG IV G+I++ + G  GL+V IG   +    ++   ++KN      L  Y  G+  + 
Sbjct: 132  EEGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEF 182

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K+L+I+   R   ++ +S R  L+    +  ++L             IE +S     +G 
Sbjct: 183  KILKINVERR---NIVVSRRELLEAERISKKAEL-------------IEQISIGEYRKGV 226

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV +
Sbjct: 227  VKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVAL 285

Query: 1435 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-- 1492
             LK  +       E         G  V+G+I ++  YG FI IE   + GL H+SE+S  
Sbjct: 286  GLKQKEHNPWEDIE----KKYPPGKRVLGKIVKLLPYGAFIEIEE-GIEGLIHISEMSWV 340

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            ++ VD  E + + G++V+  +L + K++ +ISLG+K +  +N  DN++
Sbjct: 341  KNIVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTE-RNPWDNIE 386



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
           G+ V  ++  + ++GA V+   G++ L  +  MS  + V  P + FK G  +   +L V 
Sbjct: 392 GLHVNAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVD 451

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            +SK+IT+  K+        I + +   T   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEAMFPAGT---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           SEL   P  +   +  +G+ V  +++   P  ++++LS
Sbjct: 509 SELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLS 546



 Score = 45.1 bits (105), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 140/350 (40%), Gaps = 32/350 (9%)

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 560
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGVVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGR 282

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 620
           + +  K+        I   Y      L   G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPGKRVL---GKIVKLLPYGAFIEIEEGIEGLIHISEMSW 339

Query: 621 DPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 675
                +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V+ 
Sbjct: 340 VKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTERNPWDNIEEKYPIGLHVNA 397

Query: 676 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 728
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGNSVEAVIL 448

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D ES  + L  K    N   ++    +     +V+ G V  I   G FV     + G 
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI---EAMFPAGTVISGVVTKITAFGAFVELQNGIEGL 505

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
              S+  D   A +     +G++V + ++ ++ +  +++LS+K+    + 
Sbjct: 506 IHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNA 555



 Score = 42.7 bits (99), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 95/477 (19%), Positives = 192/477 (40%), Gaps = 70/477 (14%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           + ++++PG ++KG V+ ++    +V    G+K+   +P MSEF  +   +   +GAE+  
Sbjct: 45  SDNEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLVLGAEVEV 99

Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            +   + +  ++ ++ +K   + +   + ++ E     I  G IT+  K G  V    G+
Sbjct: 100 YLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GM 155

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED--- 664
           + F P S++  D     +   +VG+V + +I+      R I +S   +++  R+S+    
Sbjct: 156 EAFLPGSQI--DNKKIKNLDDYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    GVV  +T   V  ++   G       T+     + H + M        E
Sbjct: 214 IEQISIGEYRKGVVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVLGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+    +   D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNP 381

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVNAEIKNLTNYGAFVELEPG 414

Query: 897 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
                H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNE 471


>gi|395240782|ref|ZP_10417806.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
 gi|394475564|emb|CCI87783.1| 30S Ribosomal protein S1 [Lactobacillus gigeriorum CRBIP 24.85]
          Length = 400

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 95/161 (59%), Gaps = 6/161 (3%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +V+G V  +T+ G FI +   +D  V +S +S  +++ P     +G+ V  +V+ ++   
Sbjct: 200  VVEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHIDKPSDALRVGQDVKVKVIGIDDDR 258

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
             R+ +++K ++     Q+     S+L+ GD+  G++K + ++G F+ + +  + GL HVS
Sbjct: 259  HRISLSIKQTEPSPFEQA----TSSLNEGDVFEGEVKSLTNFGAFVEVTD-GIQGLVHVS 313

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E+S  HVD    + + G+ VKVK+L +D  ++RISL +K++
Sbjct: 314  EISNKHVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSIKAT 354



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 10/160 (6%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV+GKV  + +FGA +   GGV  L  +  +S   I KP    +VG ++  +V+G+  
Sbjct: 198 GDVVEGKVSRLTNFGAFIDV-GGVDGLVHISEISYKHIDKPSDALRVGQDVKVKVIGIDD 256

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAP 614
            R    H+ +L   K    S + +AT  L    +  G +  +   G FV   +G+QG   
Sbjct: 257 DR----HRISL-SIKQTEPSPFEQATSSLNEGDVFEGEVKSLTNFGAFVEVTDGIQGLVH 311

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
            SE+      +PS +  VGQ VK ++++  P+ +RI+LS 
Sbjct: 312 VSEISNKHVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSI 351



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
            IGK +  ++  ++P   R+ ++ K        ++     S L VGD+V G++ R+ ++G 
Sbjct: 154  IGKTMKLKITEIDPNKNRLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGA 213

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            FI +   +  GL H+SE+S  H+D      R G+ VKVK++ +D ++ RISL +K +
Sbjct: 214  FIDVGGVD--GLVHISEISYKHIDKPSDALRVGQDVKVKVIGIDDDRHRISLSIKQT 268



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 93/428 (21%), Positives = 186/428 (43%), Gaps = 60/428 (14%)

Query: 1056 KKKSSYDVGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIG 1114
            K+    +VG +V  E+ +++  +L +     G  G I   E   D++    +L    K G
Sbjct: 13   KQMQGVEVGDIVDVEVLDVEDGQLDVGVVNAGVEGVITRREFTTDRN---ADLTELVKPG 69

Query: 1115 QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKV 1174
            +T+ A ++ ++        F + ++     L   E   KL   + D   G  + G V   
Sbjct: 70   ETIKALVLKRAGGDKENGEFFFSVT----RLKEREAFDKL---QKDFEEGNAIEGTVTSS 122

Query: 1175 DNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL 1234
                 L+ +         ++ S Y  S+L+ +     IGK +   +  I+  K   RL+L
Sbjct: 123  VRGGLLVDVGTRGFLPASLISSRY-VSDLKPY-----IGKTMKLKITEIDPNKN--RLIL 174

Query: 1235 RPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
               +D + ++  + + D + + +  GD+V G++S++ +   G  + +G  + G VH +E+
Sbjct: 175  -SHKDLVEEEREE-AFDKVASQLVVGDVVEGKVSRLTNF--GAFIDVG-GVDGLVHISEI 229

Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
                +  P      GQ VK KV+ I         + LS++ +                  
Sbjct: 230  SYKHIDKPSDALRVGQDVKVKVIGIDDD---RHRISLSIKQT-----------------E 269

Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1414
            P    +    L+   + +G VK++T+ G F+ ++  +   V +S +S+ +V+ P     +
Sbjct: 270  PSPFEQATSSLNEGDVFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNKHVDKPSDVLKV 329

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE---------------INNLSN-LHVG 1458
            G+ V  +VL+++P  KR+ +++K ++   AS+S                +NN  N   +G
Sbjct: 330  GQNVKVKVLNIDPSEKRISLSIKATEENAASESARPRRPRTDNSVNKKYMNNDDNGFALG 389

Query: 1459 DIVIGQIK 1466
            DI+  Q+K
Sbjct: 390  DIIGDQLK 397



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 152/373 (40%), Gaps = 65/373 (17%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G   R E   D   + + +   G+ +K  ++      +  N  F    TR+ E    
Sbjct: 44  GVEGVITRREFTTDRNADLTELVKPGETIKALVLKRAGGDKE-NGEFFFSVTRLKEREAF 102

Query: 664 DDLVK---LGSLVSGVVDVVTPNAVVVYVIAKGYSKGT-IPTEHLADHLEHATVMKSVIK 719
           D L K    G+ + G V       ++V V  +G+   + I + +++D       +K  I 
Sbjct: 103 DKLQKDFEEGNAIEGTVTSSVRGGLLVDVGTRGFLPASLISSRYVSD-------LKPYIG 155

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGC 777
              +  ++  +D   + L+LS K  L+   ++   D  AS +    VV G V  +   G 
Sbjct: 156 KTMKL-KITEIDPNKNRLILSHK-DLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGA 213

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           F+  +G + G    S+         S    VGQ V+  ++ ++ +  RI+LS+KQ+  S 
Sbjct: 214 FID-VGGVDGLVHISEISYKHIDKPSDALRVGQDVKVKVIGIDDDRHRISLSIKQTEPS- 271

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
               F Q    L E                       G V EG+V    +FG   +F E 
Sbjct: 272 ---PFEQATSSLNE-----------------------GDVFEGEVKSLTNFG---AFVEV 302

Query: 898 SD-VYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
           +D + G +   +++   V+        G  ++  +L++  +E+ + LS+K        E 
Sbjct: 303 TDGIQGLVHVSEISNKHVDKPSDVLKVGQNVKVKVLNIDPSEKRISLSIKAT------EE 356

Query: 950 NSNRQAQKKKRKR 962
           N+  ++ + +R R
Sbjct: 357 NAASESARPRRPR 369



 Score = 40.4 bits (93), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 127/312 (40%), Gaps = 34/312 (10%)

Query: 535 EIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWIT 594
           E+VKPG+  K    LV +  G   +        T +K + A      +  +     G +T
Sbjct: 64  ELVKPGETIKA---LVLKRAGGDKENGEFFFSVTRLKEREAFDKLQKDFEEGNAIEGTVT 120

Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY------HVGQVVKCRIMSSIPASR 648
              + G  V    G +GF P S +        SS Y      ++G+ +K +I    P   
Sbjct: 121 SSVRGGLLVDV--GTRGFLPASLI--------SSRYVSDLKPYIGKTMKLKITEIDPNKN 170

Query: 649 RINLSF--MMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702
           R+ LS   +++  R    D V     +G +V G V  +T     + V   G   G +   
Sbjct: 171 RLILSHKDLVEEEREEAFDKVASQLVVGDVVEGKVSRLTNFGAFIDV---GGVDGLVHIS 227

Query: 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP 761
            ++   +H       ++ G +   +++ +D++   + LS K +  +  +Q     S ++ 
Sbjct: 228 EIS--YKHIDKPSDALRVGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQA---TSSLNE 282

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             V  G V ++   G FV     + G    S+  +      S    VGQ+V+  +L+++ 
Sbjct: 283 GDVFEGEVKSLTNFGAFVEVTDGIQGLVHVSEISNKHVDKPSDVLKVGQNVKVKVLNIDP 342

Query: 822 ETGRITLSLKQS 833
              RI+LS+K +
Sbjct: 343 SEKRISLSIKAT 354


>gi|336325470|ref|YP_004605436.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
 gi|336101452|gb|AEI09272.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
          Length = 488

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 172/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVE------VGDEIDAL 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELKEKDEPVTGTVIEVVKG--GLIL 138

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG----QEIEAKIIELDKHRN---NVVLSRRAWLEQ 191

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 192  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 237

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H +G
Sbjct: 238  LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAIG 292

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+   VK++ +D 
Sbjct: 293  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDIDL 351

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 352  ERRRISLSLKQA 363



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 166/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEELKE-KDEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+  +       +   VGQ     ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W+EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGF 405


>gi|227833197|ref|YP_002834904.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
 gi|262184183|ref|ZP_06043604.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
 gi|227454213|gb|ACP32966.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
          Length = 486

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 128/257 (49%), Gaps = 28/257 (10%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL++ IG   +      E++ +   +P  G    Q ++ K++E+ +      +V LS R
Sbjct: 134  GGLILDIGLRGFLPASLVEMRRVRDLEPYIG----QELEAKIIELDKQRN---NVVLSRR 186

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + L+   S   S+              +  L    + +G V ++ + G F+ L   +D  
Sbjct: 187  AYLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGL 232

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      + 
Sbjct: 233  VHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFAR 287

Query: 1455 LH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G++V VK+
Sbjct: 288  THAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVNVGQEVMVKV 346

Query: 1514 LKVDKEKRRISLGMKSS 1530
            + +D E+RRISL +K +
Sbjct: 347  IDIDLERRRISLSVKQA 363



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           ++G    SEL       P  + +VGQ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGQEVMVKVIDIDLERRRISLS 359



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 151/355 (42%), Gaps = 33/355 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +     A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAVEEL-HAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAYLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
           + G    S+          +   VGQ V   ++D++ E  RI+LS+KQ+    TD
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVNVGQEVMVKVIDIDLERRRISLSVKQADEDYTD 369


>gi|254446646|ref|ZP_05060122.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
 gi|198260954|gb|EDY85262.1| ribosomal protein S1 [Verrucomicrobiae bacterium DG1235]
          Length = 549

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 192/419 (45%), Gaps = 63/419 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAV 1216
            V+ G  V G V  + +  A + +   +   L I D ++     PSE+         G+ +
Sbjct: 180  VNPGDVVKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRISHPSEM------LKQGEEI 232

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               ++ IN+EK+ + L L+     P+QD             ++     G  V G++  ++
Sbjct: 233  DVMIIEINREKERVSLGLKQTKSNPWQD-------------IEAKYPVGAKVAGKVVNLV 279

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                G  ++I   + G VH TE+     ++ P      G  V+  VL I +       + 
Sbjct: 280  PY--GAFIEIEEGVEGLVHVTEMSWTKRITKPSELLKVGDEVEAVVLGIQKDEE---KIS 334

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            L +R  LD     N  D+       G H            V G V+N+T+ G F+ L   
Sbjct: 335  LGIRQ-LD----PNPWDMVVHNYPVGAH------------VHGKVRNITTYGAFVELEEG 377

Query: 1391 LDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
            +D  V +S++S    +  P +       +   VL V+  ++R+ + +K    + A     
Sbjct: 378  IDGMVHVSDMSWTRKINHPSEVLKKADEIDAIVLDVDTNNQRISLGMK----QLADDPWE 433

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
            +      +GD+V G I ++ S+G F+ +++ ++ GL H+S++SE+ V+ I+ +   G +V
Sbjct: 434  DIDGRFRIGDVVSGTISKITSFGAFVELQD-HIDGLVHISQISEERVEKIKDVVDIGTEV 492

Query: 1510 KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGS-YNRSSLLENSS 1567
              +++K+D+E+RR+ L +K++ +    D+ Q++ E  + E +++ G   N   +L+ ++
Sbjct: 493  TARVIKIDREERRLGLSIKAANY----DDTQLAQETATYENMKDGGDLMNLGDILDQAA 547



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 135/281 (48%), Gaps = 33/281 (11%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE-- 1308
            +N+ T   EG IV GR+   + G  GL+V +G   +      +++      P    D+  
Sbjct: 88   ENIITKCEEGSIVQGRVKGKVKG--GLIVAMGVDAFLPASHIDIQ------PPKNLDQYI 139

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
            GQ    KVL+I+   +   ++ LS R  ++   ++   DL             +E ++P 
Sbjct: 140  GQTYDYKVLKINLERK---NIVLSRRELIEEQRASKRRDL-------------LERVNPG 183

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             +V+G VKN+T  G FI L   +D  + ++++S G +  P +    G+ +   ++ +   
Sbjct: 184  DVVKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRISHPSEMLKQGEEIDVMIIEINRE 242

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
             +RV + LK + S      E    +   VG  V G++  +  YG FI IE   + GL HV
Sbjct: 243  KERVSLGLKQTKSNPWQDIE----AKYPVGAKVAGKVVNLVPYGAFIEIEE-GVEGLVHV 297

Query: 1489 SELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            +E+S    +     + + G++V+  +L + K++ +ISLG++
Sbjct: 298  TEMSWTKRITKPSELLKVGDEVEAVVLGIQKDEEKISLGIR 338



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 146/368 (39%), Gaps = 42/368 (11%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           V PG VVKG V  +  FGA +    G+  L  +  MS   I  P +  K G E+   ++ 
Sbjct: 180 VNPGDVVKGVVKNITDFGAFIDLD-GMDGLLHITDMSWGRISHPSEMLKQGEEIDVMIIE 238

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           +  + +R+++  K+T       I + Y          G +  +  +G F+    GV+G  
Sbjct: 239 INREKERVSLGLKQTKSNPWQDIEAKYPVGAK---VAGKVVNLVPYGAFIEIEEGVEGLV 295

Query: 614 PRSELGLDPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLV---- 667
             +E+       +PS +  VG  V+  ++       +I+L    + P      D+V    
Sbjct: 296 HVTEMSWTKRITKPSELLKVGDEVEAVVLGIQKDEEKISLGIRQLDPNPW---DMVVHNY 352

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-----HLEHATVMKSVIKPGY 722
            +G+ V G V  +T     V +      +G     H++D      + H +    V+K   
Sbjct: 353 PVGAHVHGKVRNITTYGAFVEL-----EEGIDGMVHVSDMSWTRKINHPS---EVLKKAD 404

Query: 723 EFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-----SHIHPNSVVHGYVCNIIETGC 777
           E D  +VLD +++N  +S         +QL  D             VV G +  I   G 
Sbjct: 405 EIDA-IVLDVDTNNQRISL------GMKQLADDPWEDIDGRFRIGDVVSGTISKITSFGA 457

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           FV     + G    S+  + +   +     +G  V + ++ ++ E  R+ LS+K    + 
Sbjct: 458 FVELQDHIDGLVHISQISEERVEKIKDVVDIGTEVTARVIKIDREERRLGLSIK--AANY 515

Query: 838 TDASFMQE 845
            D    QE
Sbjct: 516 DDTQLAQE 523



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 105/475 (22%), Positives = 186/475 (39%), Gaps = 84/475 (17%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK--VGAELVFRVLGV 556
           G +V+G+V      G IV    GV A  P  H+     ++P K     +G    ++VL +
Sbjct: 97  GSIVQGRVKGKVKGGLIVAM--GVDAFLPASHID----IQPPKNLDQYIGQTYDYKVLKI 150

Query: 557 KSKRITVT-HKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQG 611
             +R  +   ++ L++ + A  S   +  +R+    +  G +  I   G F+   +G+ G
Sbjct: 151 NLERKNIVLSRRELIEEQRA--SKRRDLLERVNPGDVVKGVVKNITDFGAFIDL-DGMDG 207

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK--L 669
               +++       PS M   G+ +   I+       R++L      +   +D   K  +
Sbjct: 208 LLHITDMSWGRISHPSEMLKQGEEIDVMIIEINREKERVSLGLKQTKSNPWQDIEAKYPV 267

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM---KSVIKPGYEFDQ 726
           G+ V+G V  + P    + +            E   + L H T M   K + KP     +
Sbjct: 268 GAKVAGKVVNLVPYGAFIEI------------EEGVEGLVHVTEMSWTKRITKPS----E 311

Query: 727 LLVLDNESSNLLLS-----AKYSL-INSAQQLPSD-ASHIHP-NSVVHGYVCNIIETGCF 778
           LL + +E   ++L       K SL I      P D   H +P  + VHG V NI   G F
Sbjct: 312 LLKVGDEVEAVVLGIQKDEEKISLGIRQLDPNPWDMVVHNYPVGAHVHGKVRNITTYGAF 371

Query: 779 VRFLGRLTGFAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           V     + G    S     ++ +  S+       + + +LDV++   RI+L +KQ     
Sbjct: 372 VELEEGIDGMVHVSDMSWTRKINHPSEVLKKADEIDAIVLDVDTNNQRISLGMKQLADDP 431

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEG-FIIGSVIEGKVHESNDFGVVVSFEE 896
            +                             ++G F IG V+ G + +   FG  V  ++
Sbjct: 432 WED----------------------------IDGRFRIGDVVSGTISKITSFGAFVELQD 463

Query: 897 HSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLKTVFID 944
           H D  G +   Q++   VE        G+ + A ++ + + ER + LS+K    D
Sbjct: 464 HID--GLVHISQISEERVEKIKDVVDIGTEVTARVIKIDREERRLGLSIKAANYD 516



 Score = 44.3 bits (103), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 115/564 (20%), Positives = 226/564 (40%), Gaps = 93/564 (16%)

Query: 578  SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM--YHVGQV 635
            +S+ +  +  I  G IT+I ++   V           +SE GL PG E S +    +G+ 
Sbjct: 8    TSFDQLKEGSIVKGTITEIRQNEVVVDI-------GGKSE-GLVPGQEFSDLGELQIGEE 59

Query: 636  VKCRIMSSIPASRRINLSFMMKPTRVSEDDLV---KLGSLVSGVVDVVTPNAVVVYVIAK 692
            ++  +           LSF     + + ++++   + GS+V G V       ++V +   
Sbjct: 60   IEVFLEKLEDKEGNPLLSFDKAEQKKNWENIITKCEEGSIVQGRVKGKVKGGLIVAMGVD 119

Query: 693  GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS--AQ 750
             +    +P  H+   ++    +   I   Y++ ++L ++ E  N++LS +  LI    A 
Sbjct: 120  AF----LPASHI--DIQPPKNLDQYIGQTYDY-KVLKINLERKNIVLS-RRELIEEQRAS 171

Query: 751  QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQ 810
            +       ++P  VV G V NI + G F+   G + G    +    G+ +  S+    G+
Sbjct: 172  KRRDLLERVNPGDVVKGVVKNITDFGAFIDLDG-MDGLLHITDMSWGRISHPSEMLKQGE 230

Query: 811  SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
             +   I+++N E  R++L LKQ+                       +S+     E K   
Sbjct: 231  EIDVMIIEINREKERVSLGLKQT-----------------------KSNPWQDIEAK--- 264

Query: 871  GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA------GATVESGSVIQAAI 924
             + +G+ + GKV     +G  +  EE  +    +T              ++ G  ++A +
Sbjct: 265  -YPVGAKVAGKVVNLVPYGAFIEIEEGVEGLVHVTEMSWTKRITKPSELLKVGDEVEAVV 323

Query: 925  LDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ-TVNAIVEIVKE 983
            L + K E  + L +        R+ + N              D+ VH   V A V     
Sbjct: 324  LGIQKDEEKISLGI--------RQLDPN------------PWDMVVHNYPVGAHVHGKVR 363

Query: 984  NYLVL-SLPEYNHSI-GYASVSDYN-TQKF--PQKQFLNGQSVIATVMALPSSSTAGRLL 1038
            N     +  E    I G   VSD + T+K   P +       + A V+ + +++   R+ 
Sbjct: 364  NITTYGAFVELEEGIDGMVHVSDMSWTRKINHPSEVLKKADEIDAIVLDVDTNNQ--RIS 421

Query: 1039 LLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVND 1098
            L +K +++              + +G +V   I++I      ++      G +HI+++++
Sbjct: 422  LGMKQLADDPWEDI-----DGRFRIGDVVSGTISKITSFGAFVELQDHIDGLVHISQISE 476

Query: 1099 DKSNVVENLFSNFKIGQTVTARII 1122
            ++   VE +     IG  VTAR+I
Sbjct: 477  ER---VEKIKDVVDIGTEVTARVI 497



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 123/319 (38%), Gaps = 41/319 (12%)

Query: 1011 PQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAE 1070
            P +    G+ +   VM +  +    R+ L LK     +T S+     ++ Y VG+ V  +
Sbjct: 222  PSEMLKQGEEI--DVMIIEINREKERVSLGLK-----QTKSNPWQDIEAKYPVGAKVAGK 274

Query: 1071 ITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDM 1130
            +  + P    ++   G  G +H+TE++  K   +       K+G  V A ++      + 
Sbjct: 275  VVNLVPYGAFIEIEEGVEGLVHVTEMSWTKR--ITKPSELLKVGDEVEAVVLGIQKDEEK 332

Query: 1131 KKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQ 1190
                + +L   P  + V            +  +G  V G V  +    A + +   +   
Sbjct: 333  ISLGIRQLDPNPWDMVVH-----------NYPVGAHVHGKVRNITTYGAFVELEEGIDGM 381

Query: 1191 LFILDSAY-----EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT 1245
            + + D ++      PSE+            +   VL ++   + + L ++   D   D  
Sbjct: 382  VHVSDMSWTRKINHPSEV------LKKADEIDAIVLDVDTNNQRISLGMKQLAD---DPW 432

Query: 1246 VDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSG 1305
             DI           GD+V G ISKI S   G  V++  H+ G VH +++    V      
Sbjct: 433  EDIDG-----RFRIGDVVSGTISKITS--FGAFVELQDHIDGLVHISQISEERVEKIKDV 485

Query: 1306 YDEGQFVKCKVLEISRTVR 1324
             D G  V  +V++I R  R
Sbjct: 486  VDIGTEVTARVIKIDREER 504


>gi|319943161|ref|ZP_08017444.1| 30S ribosomal protein S1 [Lautropia mirabilis ATCC 51599]
 gi|319743703|gb|EFV96107.1| 30S ribosomal protein S1 [Lautropia mirabilis ATCC 51599]
          Length = 583

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 183/412 (44%), Gaps = 62/412 (15%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            G  V G V  + +  A + +   +   L I D A+     P+E+        +G+ +T  
Sbjct: 215  GAVVQGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPTEV------LQVGQEITAK 267

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISN---DNMQTFIHEGDIVGGRISKILSGVGG 1276
            VL  ++EK  + L ++   +   D  V IS     N + F        G+++ I     G
Sbjct: 268  VLKFDQEKNRVSLGIKQLGE---DPWVGISRRYPQNTRMF--------GKVTNITDY--G 314

Query: 1277 LVVQIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
              V+I P + G VH +E+    KN+  S  +S  DE   V+  VLEI    R        
Sbjct: 315  AFVEIEPGIEGLVHVSEMDWTNKNVNPSKVVSLGDE---VEVMVLEIDEDRR-------- 363

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             R SL GM  T+++        P +     E+   N  V+G +K++T  G FI L   +D
Sbjct: 364  -RISL-GMKQTHAN--------PWQEFS--ENHRRNDRVKGSIKSITDFGVFIGLPGGID 411

Query: 1393 AKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1451
              V LS+LS +   E   ++F  G  V   VL ++   +R+ + +K  +          N
Sbjct: 412  GLVHLSDLSWNKSGEEAVRDFKKGDEVEAVVLGIDVERERISLGIKQLEG-----DPFTN 466

Query: 1452 LSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
             ++ H  G +V G +  V++ G  I IE   + G    SE+S D V++  T    G  V+
Sbjct: 467  FASTHDKGSVVTGTVTSVDARGATIQIE-PEVEGYLRASEISRDRVEDARTHLSEGATVE 525

Query: 1511 VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSL 1562
              I+ +D++ R I+L +K+    + AD +Q  +E  +      +G+  R+ L
Sbjct: 526  SMIINIDRKNRSIALSIKARENADTADAMQRMAESSAVSGTTNLGALLRAKL 577



 Score = 73.2 bits (178), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 93/172 (54%), Gaps = 9/172 (5%)

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
            +E L+   +VQG VKN+T  G F+ L   +D  + +++++   V  P +   +G+ +  +
Sbjct: 209  LETLTEGAVVQGVVKNITDYGAFVDLG-GIDGLLHITDMAWRRVRHPTEVLQVGQEITAK 267

Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI-VIGQIKRVESYGLFITIENT 1480
            VL  +    RV + +K        +     +S  +  +  + G++  +  YG F+ IE  
Sbjct: 268  VLKFDQEKNRVSLGIK-----QLGEDPWVGISRRYPQNTRMFGKVTNITDYGAFVEIE-P 321

Query: 1481 NLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1531
             + GL HVSE+   + + N   +   G++V+V +L++D+++RRISLGMK ++
Sbjct: 322  GIEGLVHVSEMDWTNKNVNPSKVVSLGDEVEVMVLEIDEDRRRISLGMKQTH 373



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 120/539 (22%), Positives = 217/539 (40%), Gaps = 106/539 (19%)

Query: 190 GQLVSCIVLQLDDD------KKEIGKR-KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKS 242
           G  VS  +  L+D        ++  KR   W+ L L+L    L   TV      T  VK 
Sbjct: 88  GDFVSVAIDSLEDGFGETRLSRDRAKRLAAWVQLELALESGDLVTGTV------TGKVKG 141

Query: 243 IEDHGYILHFGLPSFT----GFLPRNNLAENSGIDVKP--------GLLLQGVVRSIDRT 290
                     GL   T     FLP       S ID +P        G  L+  V  +DR 
Sbjct: 142 ----------GLTVMTNGIRAFLP------GSLIDTRPVKDTTPYEGKTLEFKVIKLDRR 185

Query: 291 RKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVD 350
           R  V LS     V +    + +   ++ L  G +V   V++I + G  +       G +D
Sbjct: 186 RNNVVLSRR--AVIELSQGEERAKLLETLTEGAVVQGVVKNITDYGAFVDL-----GGID 238

Query: 351 -IFHLQNTFPTTNWKNDYNQH------KKVNARILFVDPTSRAVGLTL-----NPYLLHN 398
            + H+ +      W+   +        +++ A++L  D     V L +     +P++  +
Sbjct: 239 GLLHITDM----AWRRVRHPTEVLQVGQEITAKVLKFDQEKNRVSLGIKQLGEDPWVGIS 294

Query: 399 RAPPSHV----KVGDIYDQSKVVRVDRGL-GLL----LDIPSTPVSTPAYVTISDVAEEE 449
           R  P +     KV +I D    V ++ G+ GL+    +D  +  V+    V++ D  E  
Sbjct: 295 RRYPQNTRMFGKVTNITDYGAFVEIEPGIEGLVHVSEMDWTNKNVNPSKVVSLGDEVEVM 354

Query: 450 VRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
           V ++++  +  S      LG +           A+ ++     H   +    VKG + ++
Sbjct: 355 VLEIDEDRRRIS------LGMKQTH--------ANPWQEFSENH---RRNDRVKGSIKSI 397

Query: 510 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVLG--VKSKRITV 563
             FG  +  PGG+  L    H+S+    K G    + FK G E+   VLG  V+ +RI++
Sbjct: 398 TDFGVFIGLPGGIDGLV---HLSDLSWNKSGEEAVRDFKKGDEVEAVVLGIDVERERISL 454

Query: 564 THKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP 622
             K+     +    +++A   D+  +  G +T ++  G  ++    V+G+   SE+  D 
Sbjct: 455 GIKQL----EGDPFTNFASTHDKGSVVTGTVTSVDARGATIQIEPEVEGYLRASEISRDR 510

Query: 623 GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLG--SLVSGVVDV 679
             +  +    G  V+  I++    +R I LS   +    + D + ++   S VSG  ++
Sbjct: 511 VEDARTHLSEGATVESMIINIDRKNRSIALSIKARENADTADAMQRMAESSAVSGTTNL 569


>gi|229166441|ref|ZP_04294197.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
 gi|228617015|gb|EEK74084.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
          Length = 382

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFADY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    IV+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVNVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365


>gi|229058232|ref|ZP_04196620.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
 gi|423509417|ref|ZP_17485948.1| ribosomal protein S1 [Bacillus cereus HuA2-1]
 gi|423594474|ref|ZP_17570505.1| ribosomal protein S1 [Bacillus cereus VD048]
 gi|228720096|gb|EEL71680.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
 gi|401224271|gb|EJR30829.1| ribosomal protein S1 [Bacillus cereus VD048]
 gi|402456708|gb|EJV88481.1| ribosomal protein S1 [Bacillus cereus HuA2-1]
          Length = 382

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFADY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365


>gi|227501804|ref|ZP_03931853.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
 gi|306835982|ref|ZP_07468974.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
 gi|227077829|gb|EEI15792.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
 gi|304568148|gb|EFM43721.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
          Length = 487

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 174/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +     P E+ E      +G  V   
Sbjct: 34   GDIVGGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVE------VGDEVDAL 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++    + + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGAIEELQAKEEPVTGTVIEVVKG--GLIL 138

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +   +P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLEPYIG----QELEAKIIELDKQRN---NVVLSRRAYLEQ 191

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 192  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSE 237

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H VG
Sbjct: 238  LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAVG 292

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G++V VK++ +D 
Sbjct: 293  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDL 351

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 352  ERRRISLSVKQA 363



 Score = 60.5 bits (145), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 7/176 (3%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
           ++G    SEL       P  +  VGQ V  +++      RRI+LS        SE+
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLSVKQADEDYSEE 370



 Score = 47.8 bits (112), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 164/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    V P +  +VG E+   VL  + 
Sbjct: 34  GDIVGGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEVVEVGDEVDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAIEEL-QAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAYLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+          +   VGQ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLSVKQA-----DEDYSE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W EGF
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDPDTNEWKEGF 405


>gi|440702750|ref|ZP_20883876.1| 30S ribosomal protein S1 [Streptomyces turgidiscabies Car8]
 gi|440275576|gb|ELP63980.1| 30S ribosomal protein S1 [Streptomyces turgidiscabies Car8]
          Length = 501

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 187/406 (46%), Gaps = 55/406 (13%)

Query: 1137 ELSIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH---- 1186
            E++     + V++IG +  F    D +I     G  V G + KVD +  LL I       
Sbjct: 6    EITATTPQVAVNDIGDEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGV 65

Query: 1187 LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
            + ++   +    +P+E+        +G  +   VL   KE K  RL+L   +        
Sbjct: 66   IPSRELSIKHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQY 112

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            + +   ++    E  IV G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGK 170

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDL 1365
            +    ++ K++E+ +      +V LS R+ L+   S    + L+T              L
Sbjct: 171  E----LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------L 209

Query: 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSV 1425
                +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V
Sbjct: 210  QKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDV 268

Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVG 1484
            +   +RV ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   + G
Sbjct: 269  DMDRERVSLSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-GIEG 322

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L H+SEL+E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 323  LVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKEE-DGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371



 Score = 45.4 bits (106), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 128/290 (44%), Gaps = 37/290 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQI--GQVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++    S
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGS 374


>gi|390939813|ref|YP_006403550.1| 30S ribosomal protein S1 [Sulfurospirillum barnesii SES-3]
 gi|390192920|gb|AFL67975.1| ribosomal protein S1 [Sulfurospirillum barnesii SES-3]
          Length = 558

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 101/467 (21%), Positives = 209/467 (44%), Gaps = 61/467 (13%)

Query: 1065 SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA- 1123
            +L+   +  IK   + +  G    GR++ +EV D+  N+        K+G  +   I   
Sbjct: 37   ALINGVVVAIKEDVILVDVGKKSEGRLNASEVTDENGNIT------CKVGDVIPVVITGF 90

Query: 1124 KSNKPDMK-KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLT 1182
            ++ +P +  K  L +  IK  +   +E        E DV+   ++TG      N+   + 
Sbjct: 91   RNERPAVSHKKALRKDRIKAFIAEYNE--------EEDVAFDVKITGK-----NKGGFIA 137

Query: 1183 ISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGIS 1242
             ++    + F+  S     ++        +GK +   ++ I++  + + +  + + D   
Sbjct: 138  ENKD-GIEFFLPRSQAAVKDMNSL-----MGKTLKVKIIKIDEATESIIISRKKYLDDDR 191

Query: 1243 DKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP 1302
             K  +I    +Q  I   ++V G I KI +   G+ V +G  + G VH++E+      +P
Sbjct: 192  KKRKEI----VQELIDRDEVVDGTIKKITTY--GMFVDVGG-IDGLVHYSEISYKGPVNP 244

Query: 1303 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1362
             + Y EG+ +  K ++  +  R   H+ LS+++++                 P    E  
Sbjct: 245  GTLYKEGEVIPVKAIKYDKDKR---HLSLSIKAAM-----------------PDPWDEIK 284

Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGR 1421
            ++L     +Q  + N+   G F+ L   ++  + +S +S D  ++ P      G++V   
Sbjct: 285  DELETGDSIQVTISNIEPYGAFVDLGNDIEGFLHISEISWDKNIKHPRDYIEEGQVVDVE 344

Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
            V+ ++   +R+ V+LK   ++   +          VGDIV G+I  + ++G F+ I    
Sbjct: 345  VIEIDAKERRLRVSLKNVLAKPFDEFR----KKFKVGDIVKGEITTITAFGAFVKI--GG 398

Query: 1482 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            + GL H  + S D  +  + ++  G++V+VKI+K+D+E  ++SL  K
Sbjct: 399  IEGLLHNEDASWDRNNKCKELFAVGDEVEVKIVKIDEEAEKVSLSKK 445



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 109/518 (21%), Positives = 196/518 (37%), Gaps = 84/518 (16%)

Query: 458 KEGSCVRVRILGFR-------HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
           K G  + V I GFR       H + L    +KA  F        DV   + + GK    +
Sbjct: 78  KVGDVIPVVITGFRNERPAVSHKKALRKDRIKA--FIAEYNEEEDVAFDVKITGK----N 131

Query: 511 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKT 568
             G I +   G++   P    +    VK      +G  L  +++ +   ++ I ++ KK 
Sbjct: 132 KGGFIAENKDGIEFFLPRSQAA----VKDMNSL-MGKTLKVKIIKIDEATESIIISRKKY 186

Query: 569 LVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPS 627
           L   +        E  DR  +  G I KI  +G FV    G+ G    SE+       P 
Sbjct: 187 LDDDRKKRKEIVQELIDRDEVVDGTIKKITTYGMFVDV-GGIDGLVHYSEISYKGPVNPG 245

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNA 684
           ++Y  G+V+  + +      R ++LS    M  P    +D+L + G  +   +  + P  
Sbjct: 246 TLYKEGEVIPVKAIKYDKDKRHLSLSIKAAMPDPWDEIKDEL-ETGDSIQVTISNIEPYG 304

Query: 685 VVV----------YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNES 734
             V          ++    + K     +H  D++E   V+           +++ +D + 
Sbjct: 305 AFVDLGNDIEGFLHISEISWDKNI---KHPRDYIEEGQVVDV---------EVIEIDAKE 352

Query: 735 SNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
             L +S K  L   A+             +V G +  I   G FV+ +G + G      A
Sbjct: 353 RRLRVSLKNVL---AKPFDEFRKKFKVGDIVKGEITTITAFGAFVK-IGGIEGLLHNEDA 408

Query: 795 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 854
              +     + + VG  V   I+ ++ E  +++LS K+                LE+   
Sbjct: 409 SWDRNNKCKELFAVGDEVEVKIVKIDEEAEKVSLSKKE----------------LEDSPI 452

Query: 855 MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH---QLAG 911
              +  H             G ++ GK+ +  +FG+ V  EE+ D    I      Q+  
Sbjct: 453 QKYAKTHEN-----------GDIVHGKIRDIKEFGIFVELEENVD--ALIRKEDLGQVNE 499

Query: 912 ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
           A ++ G  I+AAI  +   +  + LS++ +   + REA
Sbjct: 500 ADLKIGDEIEAAITFIDDKKNRIRLSVRRLSKLKEREA 537



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 68/119 (57%), Gaps = 6/119 (5%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1471
            +GK +  +++ ++  ++ + ++ K    D R   +  +  L  +   ++V G IK++ +Y
Sbjct: 161  MGKTLKVKIIKIDEATESIIISRKKYLDDDRKKRKEIVQEL--IDRDEVVDGTIKKITTY 218

Query: 1472 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            G+F+ +   +  GL H SE+S     N  T+Y+ GE + VK +K DK+KR +SL +K++
Sbjct: 219  GMFVDVGGID--GLVHYSEISYKGPVNPGTLYKEGEVIPVKAIKYDKDKRHLSLSIKAA 275



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 130/284 (45%), Gaps = 43/284 (15%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYD 1307
            D ++  +  GD +   IS I     G  V +G  + G +H +E+   KNI    P    +
Sbjct: 281  DEIKDELETGDSIQVTISNIEPY--GAFVDLGNDIEGFLHISEISWDKNI--KHPRDYIE 336

Query: 1308 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1367
            EGQ V  +V+EI    R        LR SL  +       L+   D   K   K+ D   
Sbjct: 337  EGQVVDVEVIEIDAKER-------RLRVSLKNV-------LAKPFDEFRKKF-KVGD--- 378

Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE-KE-FPIGKLVAGRVLSV 1425
              IV+G +  +T+ G F+ +      + LL N    +  + + KE F +G  V  +++ +
Sbjct: 379  --IVKGEITTITAFGAFVKIG---GIEGLLHNEDASWDRNNKCKELFAVGDEVEVKIVKI 433

Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVG 1484
            +  +++V ++      +    S I   +  H  GDIV G+I+ ++ +G+F+ +E  N+  
Sbjct: 434  DEEAEKVSLS-----KKELEDSPIQKYAKTHENGDIVHGKIRDIKEFGIFVELEE-NVDA 487

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            L    +L + +    E   + G++++  I  +D +K RI L ++
Sbjct: 488  LIRKEDLGQVN----EADLKIGDEIEAAITFIDDKKNRIRLSVR 527


>gi|239636851|ref|ZP_04677850.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
 gi|239597525|gb|EEQ80023.1| 30S ribosomal protein S1 homolog [Staphylococcus warneri L37603]
          Length = 392

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 147/305 (48%), Gaps = 44/305 (14%)

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            S D +Q  +   +++  ++++++ G  GLVV +G    G V  + +    + D  S + E
Sbjct: 97   SYDYLQEKLDNNEVIEAKVTEVVKG--GLVVDVGQR--GFVPASLISTDFIED-FSDF-E 150

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
            GQ +K KV E+         V LS ++     +    + L             ++ L+  
Sbjct: 151  GQTIKIKVEELDPE---NNRVILSRKAVEQAENEVKKASL-------------LDSLNAG 194

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE+   +G  V  +V SVE  
Sbjct: 195  DVIEGKVARLTNFGAFVDIG-GVDGLVHVSELSHQHVQSPEEVVFVGDKVNVKVKSVEKD 253

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
            ++R+ +++K  D+     ++I      H  D++ G + R+ ++G F+ I    + GL H+
Sbjct: 254  TERISLSIK--DTLPTPFAQIK--GQFHENDVIEGTVVRLANFGAFVEIA-PGVQGLVHI 308

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS----------------SYF 1532
            SE+   H+     +   G++V VKIL +D+E  R+SL +K+                SY 
Sbjct: 309  SEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDVVESDASTTQSYL 368

Query: 1533 KNDAD 1537
             NDAD
Sbjct: 369  NNDAD 373



 Score = 65.9 bits (159), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 121/261 (46%), Gaps = 26/261 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           ++KV  V +G GL++D+      P++ +ST      SD   + ++ K+E+   E + V  
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDFEGQTIKIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E     + KAS  + L         G V++GKV  + +FGA V   GGV  L
Sbjct: 169 -ILSRKAVEQAENEVKKASLLDSL-------NAGDVIEGKVARLTNFGAFVDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   VG ++  +V  V+  ++RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHQHVQSPEEVVFVGDKVNVKVKSVEKDTERISLSIKDTLPTPFAQIKGQFHEN 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV    GVQG    SE+       P  +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGI 336

Query: 644 IPASRRINLSFMMKPTRVSED 664
              + R++LS  +K T  +ED
Sbjct: 337 DEENERVSLS--IKATLPNED 355



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 152/372 (40%), Gaps = 32/372 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I KP +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDSGAYILSKRQLETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---- 664
            +GF P S +  D   E  S +  GQ +K ++    P + R+ LS   K    +E+    
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQTIKIKVEELDPENNRVILS--RKAVEQAENEVKK 184

Query: 665 ----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
               D +  G ++ G V  +T     V +   G   G +    L+   +H    + V+  
Sbjct: 185 ASLLDSLNAGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--QHVQSPEEVVFV 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G + + ++  ++ ++  + LS K +L     Q+       H N V+ G V  +   G FV
Sbjct: 240 GDKVNVKVKSVEKDTERISLSIKDTLPTPFAQI---KGQFHENDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 836
                + G    S+          +    GQ V   IL ++ E  R++LS+K +  +   
Sbjct: 297 EIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDV 356

Query: 837 -STDASFMQEHF 847
             +DAS  Q + 
Sbjct: 357 VESDASTTQSYL 368


>gi|384045064|ref|YP_005493081.1| 30S ribosomal protein S1 [Bacillus megaterium WSH-002]
 gi|345442755|gb|AEN87772.1| 30S ribosomal protein S1-like protein [Bacillus megaterium WSH-002]
          Length = 384

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 147/314 (46%), Gaps = 40/314 (12%)

Query: 1241 ISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQIG-----PHLYGRVHFTE 1293
            +S + VD     D ++  +  G++    + +I+ G  GLVV IG     P      HF  
Sbjct: 87   LSKRAVDAEKAWDGLEAKLSSGEVFEAVVKEIVKG--GLVVDIGVRGFIPASLVETHFV- 143

Query: 1294 LKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1353
                   D  + Y + Q +  KV+E+ +       V LS R+ ++        ++     
Sbjct: 144  -------DDFAEYQD-QTLTVKVVELDKE---KNRVILSHRAVVEEELVQQKENV----- 187

Query: 1354 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1413
                    +E L    +++G V+ +T  G F+ +   +D  V +S LS   VE P     
Sbjct: 188  --------LESLKEGQVLEGTVQRLTDFGAFVDVG-GVDGLVHISQLSHTRVEKPSDVVA 238

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
             G  V  RVLSV+  + RV +++K  D+     S I+  + L  GD+V G +KR+ S+G 
Sbjct: 239  EGDTVKVRVLSVDKSTGRVSLSIK--DTLEGPWSNIS--TKLRQGDVVDGTVKRLVSFGA 294

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1533
            F+ +    + GL H+S++S  H+     +   GEKV VK+L V++++RR+SL ++    +
Sbjct: 295  FVEV-LPGVEGLVHISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSIRDLEEE 353

Query: 1534 NDADNLQMSSEEES 1547
               D      +EES
Sbjct: 354  EQEDYGDYELQEES 367



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G V++G V  +  FGA V   GGV  L  +  +S   + KP      G  +  RVL 
Sbjct: 191 LKEGQVLEGTVQRLTDFGAFVDV-GGVDGLVHISQLSHTRVEKPSDVVAEGDTVKVRVLS 249

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V   + R++++ K TL +   + +S+     D  +  G + ++   G FV    GV+G  
Sbjct: 250 VDKSTGRVSLSIKDTL-EGPWSNISTKLRQGD--VVDGTVKRLVSFGAFVEVLPGVEGLV 306

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S++       P  +   G+ V  +++      RR++LS 
Sbjct: 307 HISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSI 347



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 42/67 (62%)

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
             +++L VG+ V G I +VE   +++ + N+ L G+  +SEL+  H++    + + G +V+
Sbjct: 15   EVTSLEVGETVKGTITKVEEKQVYVDVPNSKLDGIIPISELASLHIEKAGDVIQEGAEVE 74

Query: 1511 VKILKVD 1517
             K++KV+
Sbjct: 75   AKVIKVE 81


>gi|329940857|ref|ZP_08290137.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045]
 gi|329300151|gb|EGG44049.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045]
          Length = 499

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|218896527|ref|YP_002444938.1| 30S ribosomal protein S1 [Bacillus cereus G9842]
 gi|228900178|ref|ZP_04064410.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
 gi|402561411|ref|YP_006604135.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-771]
 gi|423361556|ref|ZP_17339058.1| ribosomal protein S1 [Bacillus cereus VD022]
 gi|423564107|ref|ZP_17540383.1| ribosomal protein S1 [Bacillus cereus MSX-A1]
 gi|434374536|ref|YP_006609180.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-789]
 gi|218545661|gb|ACK98055.1| ribosomal protein S1 [Bacillus cereus G9842]
 gi|228859448|gb|EEN03876.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
 gi|401079367|gb|EJP87665.1| ribosomal protein S1 [Bacillus cereus VD022]
 gi|401197598|gb|EJR04527.1| ribosomal protein S1 [Bacillus cereus MSX-A1]
 gi|401790063|gb|AFQ16102.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-771]
 gi|401873093|gb|AFQ25260.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-789]
          Length = 382

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 172/383 (44%), Gaps = 53/383 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R           
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDREKNRVI----- 164

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
                   +S     +L  D     K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 165  -------LSHKAVVELELD----SKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKND 1535
            +L+V   ++RISL +K +  +N+
Sbjct: 328  VLEVHAAEKRISLSIKEALEENN 350



 Score = 40.8 bits (94), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 149/356 (41%), Gaps = 29/356 (8%)

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 663
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 721
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 778
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           V  L  + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAL 346


>gi|418327907|ref|ZP_12939039.1| 30S ribosomal protein S1 [Staphylococcus epidermidis 14.1.R1.SE]
 gi|365232466|gb|EHM73462.1| 30S ribosomal protein S1 [Staphylococcus epidermidis 14.1.R1.SE]
          Length = 392

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 184/397 (46%), Gaps = 41/397 (10%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            D+  G +VTG V KV+++  ++ I+   K    I  S      ++       +G  V  +
Sbjct: 12   DIKEGDKVTGEVQKVEDKQVVVHINGG-KFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70

Query: 1220 VLSI--NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
            V  I  ++E      +L   Q        + S + +Q  ++  +++   +++++ G  GL
Sbjct: 71   VTKIEFDEENDTGAYILSKRQ-----LETEKSYEYLQEKLNNDEVIEAEVTEVVKG--GL 123

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1337
            VV +G    G V  + +    + D  S +D GQ ++ KV E+                  
Sbjct: 124  VVDVGQR--GFVPASLISTDFIED-FSVFD-GQTIRIKVEELDPENNRVI---------- 169

Query: 1338 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1397
              +S      L  D     K    ++ L+   ++ G V  +T+ G FI +   +D  V +
Sbjct: 170  --LSRKAVEQLEND----AKKASILDSLNEGDVIDGKVARLTNFGAFIDIG-GVDGLVHV 222

Query: 1398 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1457
            S LS  +V++PE+   +G+ V  +V SVE  S+R+ +++K     T      N     H 
Sbjct: 223  SELSHEHVQTPEEVVSVGEAVIVKVKSVEKDSERISLSIKD----TLPTPFENIKGKFHE 278

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
             D++ G + R+ ++G F+ I   ++ GL H+SE+   H+ +   +   G++V VKIL +D
Sbjct: 279  DDVIEGTVVRLANFGAFVEIA-PSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGID 337

Query: 1518 KEKRRISLGMKSSYFK-----NDADNLQMSSEEESDE 1549
            ++  RISL +K++  K     +DA   Q   E+++DE
Sbjct: 338  EDNERISLSIKATLPKENVIESDASTTQSYLEDDNDE 374



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 132/285 (46%), Gaps = 30/285 (10%)

Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDE 1308
            N++M   I EGD V G + K+      +VV I G    G +  ++L    + +P      
Sbjct: 6    NESMINDIKEGDKVTGEVQKVEDK--QVVVHINGGKFNGIIPISQLSTHHIENPSEVVKV 63

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI-EDLSP 1367
            G  V+  V +I                  D  + T +  LS       K  E + E L+ 
Sbjct: 64   GDEVEAYVTKIE----------------FDEENDTGAYILSKRQLETEKSYEYLQEKLNN 107

Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAGRVLSV 1425
            + +++  V  V   G  + + ++    V  S +S  ++E    +F +  G+ +  +V  +
Sbjct: 108  DEVIEAEVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRIKVEEL 161

Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
            +P + RV ++ K  +       + + L +L+ GD++ G++ R+ ++G FI I   +  GL
Sbjct: 162  DPENNRVILSRKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGVD--GL 219

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HVSELS +HV   E +   GE V VK+  V+K+  RISL +K +
Sbjct: 220  VHVSELSHEHVQTPEEVVSVGEAVIVKVKSVEKDSERISLSIKDT 264



 Score = 63.9 bits (154), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 152/375 (40%), Gaps = 38/375 (10%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQKVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239

Query: 721 GYEFDQLLV----LDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
           G   + ++V    ++ +S  + LS K +L    + +       H + V+ G V  +   G
Sbjct: 240 G---EAVIVKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFG 293

Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC-- 834
            FV     + G    S+         ++    GQ V   IL ++ +  RI+LS+K +   
Sbjct: 294 AFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPK 353

Query: 835 --CSSTDASFMQEHF 847
                +DAS  Q + 
Sbjct: 354 ENVIESDASTTQSYL 368



 Score = 62.0 bits (149), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           +++V  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E L     KAS  + L         G V+ GKV  + +FGA +   GGV  L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   VG  ++ +V  V+  S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVIVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV     VQG    SE+       P+ +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336

Query: 644 IPASRRINLSF 654
              + RI+LS 
Sbjct: 337 DEDNERISLSI 347



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 113/289 (39%), Gaps = 55/289 (19%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQKVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEVEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +     D E+     +  Y L  S +QL ++ S+      ++ + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K      
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            DA          +K ++L S                G VI+GKV    +FG   +F + 
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFG---AFIDI 213

Query: 898 SDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
             V G +        H Q     V  G  +   +  V K    + LS+K
Sbjct: 214 GGVDGLVHVSELSHEHVQTPEEVVSVGEAVIVKVKSVEKDSERISLSIK 262


>gi|389611195|dbj|BAM19209.1| unknown unsecreted protein [Papilio polytes]
          Length = 111

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 68/103 (66%)

Query: 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877
            +  + + A LE   G A+R  ++ + +L+ YP R D+ ++Y+D  I+  D++ IR L ER
Sbjct: 5    VSLLVRFAQLERGCGAAERAAALLDHVLAAYPHRVDVAALYVDMLIKSNDIEQIRQLMER 64

Query: 1878 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
              S  LP +KMK LFKK++E E+ +G  +++E ++++A+E++E
Sbjct: 65   MTSQKLPARKMKVLFKKWIEVEEKIGNHQQVENIRKRAVEFIE 107


>gi|302550706|ref|ZP_07303048.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736]
 gi|302468324|gb|EFL31417.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736]
          Length = 497

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 128/290 (44%), Gaps = 37/290 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQIG--QVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++    S
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGS 374


>gi|315636540|ref|ZP_07891776.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
 gi|384156568|ref|YP_005539383.1| 30S ribosomal protein S1 [Arcobacter butzleri ED-1]
 gi|315479189|gb|EFU69886.1| 30S ribosomal protein S1 [Arcobacter butzleri JV22]
 gi|345470122|dbj|BAK71573.1| 30S ribosomal protein S1 [Arcobacter butzleri ED-1]
          Length = 550

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 170/352 (48%), Gaps = 40/352 (11%)

Query: 1183 ISRHLKAQLFILDSA----YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
            +S   K    I D+A    + P      + +  IGK V   V+ +NK +  + +V R   
Sbjct: 120  VSVKQKGGFVIEDAAGCEYFMPMAQSYLKTQGAIGKTVKAKVIKVNKAQNSI-IVSRK-- 176

Query: 1239 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
              + +++ +I ++ +   + + + + G I KI S   G+ V +G  + G V++ E+    
Sbjct: 177  -KLIEESKNIKDNKVAEILEKKEAINGTIKKITSY--GMFVDLGG-IDGLVNYNEISYKG 232

Query: 1299 VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1358
              +P + Y+EG  V   VL   +  +   H+ LS++++L                 P K 
Sbjct: 233  PVNPANYYNEGDEVSVVVLAYDKAKQ---HLSLSIKAALS---------------NPWKE 274

Query: 1359 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKL 1417
            ++   ++   + V   V N  S G F+ L   ++  + +S +S +  +++P++   IG  
Sbjct: 275  IKDQLEVGDTITVT--VSNFESYGAFVDLGNDIEGLLHISEISWNKNLKNPKELLTIGDE 332

Query: 1418 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1476
            +   V+ +    KR+ V+LK    +  ++       N H VGD++ G+I  +  +G F+ 
Sbjct: 333  INVEVIELNVEQKRLRVSLKNLQEKPFTK-----FVNEHKVGDVIKGKIATLTDFGAFVN 387

Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            I + +  GL H  E S +     +T+++ G++V+V+I+K+DKEK  ISL +K
Sbjct: 388  IGDVD--GLLHNEEASWESNAKCKTLFKKGDEVEVRIIKIDKEKENISLSIK 437



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 109/515 (21%), Positives = 216/515 (41%), Gaps = 73/515 (14%)

Query: 456 KYKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
           KY  G  + V ++G +      +   +L+   F+  V TH +    + ++GK+++V   G
Sbjct: 67  KYNVGDVIPVMLMGNKGERPNISHKKVLQKEKFDNFVKTHGEDFEDVTIEGKIVSVKQKG 126

Query: 514 A-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV 570
             +++   G +   P   M++  +   G    +G  +  +V+ V   +  I V+ KK + 
Sbjct: 127 GFVIEDAAGCEYFMP---MAQSYLKTQG---AIGKTVKAKVIKVNKAQNSIIVSRKKLIE 180

Query: 571 KSKLAILSSYAEATDRL-ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
           +SK    +  AE  ++    +G I KI  +G FV    G+ G    +E+       P++ 
Sbjct: 181 ESKNIKDNKVAEILEKKEAINGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVNPANY 239

Query: 630 YHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 686
           Y+ G  V   +++   A + ++LS    +  P +  +D L ++G  ++  V V    +  
Sbjct: 240 YNEGDEVSVVVLAYDKAKQHLSLSIKAALSNPWKEIKDQL-EVGDTIT--VTVSNFESYG 296

Query: 687 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNESSNLLL 739
            +V      +G +       H+   +  K++  P      G E + +++ L+ E   L +
Sbjct: 297 AFVDLGNDIEGLL-------HISEISWNKNLKNPKELLTIGDEINVEVIELNVEQKRLRV 349

Query: 740 SAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
           S K     + Q+ P +   + H    V+ G +  + + G FV  +G + G     +A   
Sbjct: 350 SLK-----NLQEKPFTKFVNEHKVGDVIKGKIATLTDFGAFVN-IGDVDGLLHNEEASWE 403

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
             A     +  G  V   I+ ++ E   I+LS+K    S + A   Q+ + L        
Sbjct: 404 SNAKCKTLFKKGDEVEVRIIKIDKEKENISLSIKD--ISDSPAKRFQDAYKL-------- 453

Query: 858 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ---LAGATV 914
                            G +++G V +  DFG+ +  E + D  G I +     L    V
Sbjct: 454 -----------------GDIVKGPVKDIKDFGIFIKLENNLD--GLIRNEDFGPLKADEV 494

Query: 915 ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
           ++G  I+A I+++   +  V LS++ +   + RE 
Sbjct: 495 KNGDEIEAVIINIDTKKNRVRLSVRRLEQQQEREV 529


>gi|89898347|ref|YP_515457.1| 30S ribosomal protein S1 [Chlamydophila felis Fe/C-56]
 gi|89331719|dbj|BAE81312.1| 30S ribosomal protein S1 [Chlamydophila felis Fe/C-56]
          Length = 581

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 174/379 (45%), Gaps = 58/379 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVSGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNI-CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                G  ++I   + G +H +E+  +  V DP    ++G  V+  VL I +        +
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKD-----EGK 369

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            +SL     G+  T  +        P  ++E  E     + V   +KN+T+ G F+ L   
Sbjct: 370  ISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVHAEIKNLTNYGAFVELEPG 414

Query: 1391 LDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
            ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +K   S   ++ E 
Sbjct: 415  IEGLIHISDMSWIKKVSHPSELFKKGSTVEAVILSVDKESKKITLGVKQLSSNPWNEIE- 473

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
                    G  + G + ++ ++G F+ ++N  + GL HVSELSE     IE I   G+ V
Sbjct: 474  ---KMFPTGSNISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFSKIEDIISIGDSV 529

Query: 1510 KVKILKVDKEKRRISLGMK 1528
              K++K+D + +++SL +K
Sbjct: 530  SAKVIKLDPDHKKVSLSVK 548



 Score = 61.6 bits (148), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I + + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQIIRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 184  ILKINIDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGVV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  V G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRVSGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NVVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
           G+ V  ++  + ++GA V+   G++ L  +  MS  + V  P + FK G+ +   +L V 
Sbjct: 392 GLHVHAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGSTVEAVILSVD 451

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            +SK+IT+  K+        I   +   ++     G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEKMFPTGSN---ISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFSKIEDIISIGDSVSAKVIKLDPDHKKVSLS 546



 Score = 43.5 bits (101), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 100/477 (20%), Positives = 190/477 (39%), Gaps = 74/477 (15%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           S+++PG ++KG V+ ++    +V    G+K+   +P MSEF  ++  +   +GAE+   +
Sbjct: 47  SEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IESSEGLVLGAEVEVYL 101

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
            +    + K +    K T  +    IL+   E +   I  G I +  K G  V    G++
Sbjct: 102 DQAEDEEGKVVLSREKATRQRQWEHILAHCEEGS---IVKGQIIRKVKGGLIVDI--GME 156

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
            F P S+  +D     +   +VG+V + +I+  I   RR   ++   +++  R+S+    
Sbjct: 157 AFLPGSQ--IDNKKIKNLDDYVGKVCEFKIL-KINIDRRNVVVSRRELLEAERISKKAEL 213

Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
            + + +G    GVV  +T     V++   G       T+     + H + M        E
Sbjct: 214 IEQITIGERRKGVVKNITDFG--VFLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264

Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
            +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVSGKIVKLLPYGAF 321

Query: 779 VRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           +     + G    S+ +      D S+    G  V + +L +  + G+I+L LKQ+  + 
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNVVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHNP 381

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
            D         +EEK                   + IG  +  ++    ++G  V  E  
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVHAEIKNLTNYGAFVELEPG 414

Query: 897 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
                H     +I          + GS ++A IL V K  + + L +K +  + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGSTVEAVILSVDKESKKITLGVKQLSSNPWNE 471


>gi|228951974|ref|ZP_04114071.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
            str. T03a001]
 gi|423504811|ref|ZP_17481402.1| ribosomal protein S1 [Bacillus cereus HD73]
 gi|449088385|ref|YP_007420826.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
            str. HD73]
 gi|228807699|gb|EEM54221.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
            str. T03a001]
 gi|402455333|gb|EJV87116.1| ribosomal protein S1 [Bacillus cereus HD73]
 gi|449022142|gb|AGE77305.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
            str. HD73]
          Length = 382

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 176/383 (45%), Gaps = 53/383 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKND 1535
            +L+V   ++RISL +K +  +N+
Sbjct: 328  VLEVQVAEKRISLSIKEALEENN 350



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          ++   +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVQVAEKRISLSIKEALEENNVTED 354


>gi|228964572|ref|ZP_04125681.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
            T04001]
 gi|228795106|gb|EEM42603.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
            T04001]
          Length = 393

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 176/383 (45%), Gaps = 53/383 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKND 1535
            +L+V   ++RISL +K +  +N+
Sbjct: 328  VLEVHAAEKRISLSIKEALEENN 350



 Score = 40.8 bits (94), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 149/356 (41%), Gaps = 29/356 (8%)

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 663
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 721
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 778
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           V  L  + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAL 346


>gi|225619757|ref|YP_002721014.1| 30S ribosomal protein S1 [Brachyspira hyodysenteriae WA1]
 gi|225214576|gb|ACN83310.1| 30S ribosomal protein S1 [Brachyspira hyodysenteriae WA1]
          Length = 554

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 159/360 (44%), Gaps = 17/360 (4%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           +L+ +   G+    +++K   ++ GKV  ++ FGA ++   G      +P+MS  ++V P
Sbjct: 173 LLEETQNAGIETFLNNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVVNP 232

Query: 540 GKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
                 G E +F+VL + K  R      K L +             D  I +G +T ++K
Sbjct: 233 KSVISKGEERMFKVLHIDKENRKVDLGLKQLDEDPWGKFVEQYHIGD--IINGEVTNVKK 290

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM- 656
            G FV+  +G++G    S+L  +     PS     G  ++C+I+    A R++ L     
Sbjct: 291 FGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQV 350

Query: 657 --KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
              P    E D   + S V   V  +  N   V+ +  G  +G        D   +   M
Sbjct: 351 KENPWDTVEKDF-PVKSAVKCKVKRIIKN-FAVFELPNGL-EGICDISDF-DWRNNIVNM 406

Query: 715 KSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNI 772
           K  +K G E + +++ +D +   + LS K++  +S  +L   A   HP  S+V G V  I
Sbjct: 407 KDYVKEGEEVNMVIMSIDRDKQRIKLSYKHTK-DSPWRLFEKA---HPQGSIVDGTVKAI 462

Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           +++G  V     L G+   S+    + + L +   VG++    + +VN    RI+LS ++
Sbjct: 463 VDSGAIVSLEDDLEGYMHVSQVEIPKGSTLEEVVKVGETYPFVVREVNQSKRRISLSRRE 522



 Score = 77.8 bits (190), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 93/168 (55%), Gaps = 6/168 (3%)

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
            + +L  N I+ G VKN+   G FI ++   D  + + N+S   V +P+     G+    +
Sbjct: 186  LNNLKENDIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVVNPKSVISKGEERMFK 245

Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
            VL ++  +++V++ LK  D     +     +   H+GDI+ G++  V+ +G F+ + +  
Sbjct: 246  VLHIDKENRKVDLGLKQLDEDPWGKF----VEQYHIGDIINGEVTNVKKFGAFVKVAD-G 300

Query: 1482 LVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            + GL HVS+LS + HV+N     + G  ++ KIL ++  +R+++LG+K
Sbjct: 301  IEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLK 348



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 134/289 (46%), Gaps = 38/289 (13%)

Query: 1250 NDNMQTFIH---EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            N  ++TF++   E DI+ G++  I     G  ++I P   G +    +    V +P S  
Sbjct: 179  NAGIETFLNNLKENDIINGKVKNIEKF--GAFIEITPGFDGFLAIPNMSWDKVVNPKSVI 236

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK--IED 1364
             +G+    KVL I +  R    V+L L+                D D  GK +E+  I D
Sbjct: 237  SKGEERMFKVLHIDKENR---KVDLGLKQ--------------LDEDPWGKFVEQYHIGD 279

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVL 1423
                 I+ G V NV   G F+ ++  ++  V +S+LS + +V +P      G  +  ++L
Sbjct: 280  -----IINGEVTNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKIL 334

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV-ESYGLFITIENTNL 1482
             +    +++ + LK          E     +  V   V  ++KR+ +++ +F  + N  L
Sbjct: 335  DMNAAERKLTLGLKQVKENPWDTVE----KDFPVKSAVKCKVKRIIKNFAVF-ELPN-GL 388

Query: 1483 VGLCHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             G+C +S+    +++ N++   + GE+V + I+ +D++K+RI L  K +
Sbjct: 389  EGICDISDFDWRNNIVNMKDYVKEGEEVNMVIMSIDRDKQRIKLSYKHT 437



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 110/541 (20%), Positives = 199/541 (36%), Gaps = 82/541 (15%)

Query: 588  ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
            I  G + + +    F+ F +  +G   RSE   +P         +G+ ++  I+S     
Sbjct: 31   IVKGKVVQFDDTDVFIDFDSKSEGKIKRSEFDKEP--------TIGEEIEA-IVSGEDDK 81

Query: 648  RRINLSFMMKPTRVSE---DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
              + LS      R S+   D+ VK  + ++GVV  V      V ++     +   P   +
Sbjct: 82   GYVILSKSEIDKRKSQELIDNAVKNNTAITGVVKEVIKGGFKVSIMG---HQAFCPFSQI 138

Query: 705  ADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIHPN 762
               L         I   YEF    V+     ++++S +  L+   Q   + +  +++  N
Sbjct: 139  --DLARGIKEADYIGKEYEF---RVIKKNGRDVVVSRRV-LLEETQNAGIETFLNNLKEN 192

Query: 763  SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
             +++G V NI + G F+       GF         +  +       G+     +L ++ E
Sbjct: 193  DIINGKVKNIEKFGAFIEITPGFDGFLAIPNMSWDKVVNPKSVISKGEERMFKVLHIDKE 252

Query: 823  TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
              ++ L LKQ               L E+               K+VE + IG +I G+V
Sbjct: 253  NRKVDLGLKQ---------------LDEDPWG------------KFVEQYHIGDIINGEV 285

Query: 883  HESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
                 FG  V   +      H     + +H       V+ G+ ++  ILD+  AER + L
Sbjct: 286  TNVKKFGAFVKVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTL 345

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
             LK V               K+       KD  V   V   V+ + +N+ V  LP     
Sbjct: 346  GLKQV---------------KENPWDTVEKDFPVKSAVKCKVKRIIKNFAVFELPNGLEG 390

Query: 997  IGYASVSDYNTQKFPQKQFLN-GQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRA 1055
            I   S  D+       K ++  G+ V   +M++       +L       S   T  S   
Sbjct: 391  ICDISDFDWRNNIVNMKDYVKEGEEVNMVIMSIDRDKQRIKL-------SYKHTKDSPWR 443

Query: 1056 KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQ 1115
              + ++  GS+V   +  I      +       G +H+++V   K + +E +    K+G+
Sbjct: 444  LFEKAHPQGSIVDGTVKAIVDSGAIVSLEDDLEGYMHVSQVEIPKGSTLEEV---VKVGE 500

Query: 1116 T 1116
            T
Sbjct: 501  T 501



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 140/319 (43%), Gaps = 59/319 (18%)

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL I+KE + + L L+   +    K V+          H GDI+ G ++ +     G  V
Sbjct: 246  VLHIDKENRKVDLGLKQLDEDPWGKFVEQ--------YHIGDIINGEVTNVKKF--GAFV 295

Query: 1280 QIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            ++   + G VH ++L  N  V++P     +G F++CK+L+++   R     +L+L     
Sbjct: 296  KVADGIEGLVHVSDLSWNSHVNNPSDFVKKGAFLECKILDMNAAER-----KLTL----- 345

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
            G+            + P   +EK  D      V+  VK +        L   L+    +S
Sbjct: 346  GLKQVK--------ENPWDTVEK--DFPVKSAVKCKVKRIIKNFAVFELPNGLEGICDIS 395

Query: 1399 ---------NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-TSDS--RTASQ 1446
                     N+ D YV+        G+ V   ++S++   +R++++ K T DS  R   +
Sbjct: 396  DFDWRNNIVNMKD-YVKE-------GEEVNMVIMSIDRDKQRIKLSYKHTKDSPWRLFEK 447

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
            +          G IV G +K +   G  +++E+ +L G  HVS++       +E + + G
Sbjct: 448  AHPQ-------GSIVDGTVKAIVDSGAIVSLED-DLEGYMHVSQVEIPKGSTLEEVVKVG 499

Query: 1507 EKVKVKILKVDKEKRRISL 1525
            E     + +V++ KRRISL
Sbjct: 500  ETYPFVVREVNQSKRRISL 518



 Score = 47.0 bits (110), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 142/353 (40%), Gaps = 51/353 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +VKGKV+  D     + F    +        SEF+     K+  +G E+   V G   
Sbjct: 29  GKIVKGKVVQFDDTDVFIDFDSKSEGKI---KRSEFD-----KEPTIGEEIEAIVSGEDD 80

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
           K   +  K  + K K   L   A   +  IT G + ++ K G  V    G Q F P S++
Sbjct: 81  KGYVILSKSEIDKRKSQELIDNAVKNNTAIT-GVVKEVIKGGFKVSIM-GHQAFCPFSQI 138

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMS----SIPASRRINLSFMMKPTRVSEDDLVKLGSLVS 674
            L  G + +   ++G+  + R++      +  SRR+ L         +  + +K   +++
Sbjct: 139 DLARGIKEAD--YIGKEYEFRVIKKNGRDVVVSRRVLLEETQNAGIETFLNNLKENDIIN 196

Query: 675 GVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE-FDQLLVLDNE 733
           G V  +      +  I  G+  G +   +++   +     KSVI  G E   ++L +D E
Sbjct: 197 GKVKNIEKFGAFIE-ITPGFD-GFLAIPNMS--WDKVVNPKSVISKGEERMFKVLHIDKE 252

Query: 734 SSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
           +  + L  K        QL  D         H   +++G V N+ + G FV+    + G 
Sbjct: 253 NRKVDLGLK--------QLDEDPWGKFVEQYHIGDIINGEVTNVKKFGAFVKVADGIEGL 304

Query: 789 APRSKAVDGQRADLSKTYYV---------GQSVRSNILDVNSETGRITLSLKQ 832
              S        DLS   +V         G  +   ILD+N+   ++TL LKQ
Sbjct: 305 VHVS--------DLSWNSHVNNPSDFVKKGAFLECKILDMNAAERKLTLGLKQ 349


>gi|295839505|ref|ZP_06826438.1| ribosomal protein S1 [Streptomyces sp. SPB74]
 gi|197699395|gb|EDY46328.1| ribosomal protein S1 [Streptomyces sp. SPB74]
          Length = 504

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|302561209|ref|ZP_07313551.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000]
 gi|302478827|gb|EFL41920.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000]
          Length = 497

 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|296272028|ref|YP_003654659.1| RNA binding S1 domain-containing protein [Arcobacter nitrofigilis DSM
            7299]
 gi|296096203|gb|ADG92153.1| RNA binding S1 domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 550

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 111/470 (23%), Positives = 208/470 (44%), Gaps = 67/470 (14%)

Query: 1065 SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA- 1123
            S+V   I EI    + +  G    GR+HI+E+              +K+G T+   +   
Sbjct: 29   SVVDGVIVEISGENVSVDVGQKVEGRLHISEITIGGE-------VKYKVGDTIPVILTGI 81

Query: 1124 KSNKPDMK-KSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDN--EWAL 1180
            +  KP +  K  L +      +   +E    +  E   +SI  R  G++ + DN  E+ +
Sbjct: 82   RGEKPSISHKKVLQKEKFDAFVKEHTEDLEDVTIEGKIISIKPR-GGFIIEDDNGCEYFM 140

Query: 1181 LTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240
                 +LKAQ                     +GK V   VL IN+ +  + +  +     
Sbjct: 141  PMAQSYLKAQ-------------------GALGKKVKAKVLKINEAQNSIIVSRKKL--- 178

Query: 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVS 1300
            I +  ++  +  +  F+    ++ G I KI S   G+ V +G  + G V++ E+      
Sbjct: 179  IEESKIE-KDAKVAQFLENDGLINGTIKKITSY--GMFVDLGG-IDGLVNYNEISYKGPV 234

Query: 1301 DPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1360
            +P + Y EG  V  KVL   +  +   H+ LS++++L                 P + + 
Sbjct: 235  NPSNYYAEGDEVTVKVLSYDKAKQ---HLSLSVKAALS---------------NPWEEIR 276

Query: 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVA 1419
               D+   + V   + N  S G F+ L   ++  + +S +S +  +++P+    +G  V 
Sbjct: 277  DELDVGDTITVT--ISNFESYGAFVNLGNDIEGLLHISEISWNKNLKNPKDLLTLGDEVN 334

Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIE 1478
              V+ ++   KR+ V+LK    +  ++      +  H VGDIV G++  +  +G F+T+ 
Sbjct: 335  VEVIELDVDKKRLRVSLKNLQEKPFAK-----FTKEHKVGDIVTGKVATLTEFGAFVTLG 389

Query: 1479 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            + +  GL H  E S +     + +Y+ G++++VKI+K+DKEK  ISL +K
Sbjct: 390  DVD--GLLHNEEASWEGNAKCKNLYKKGDELEVKIIKIDKEKENISLSIK 437



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 118/517 (22%), Positives = 214/517 (41%), Gaps = 75/517 (14%)

Query: 454 EKKYKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
           E KYK G  + V + G R  +   +   +L+   F+  V  H++    + ++GK+I++  
Sbjct: 65  EVKYKVGDTIPVILTGIRGEKPSISHKKVLQKEKFDAFVKEHTEDLEDVTIEGKIISIKP 124

Query: 512 FGA-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKT 568
            G  I++   G +   P+           GKK K       +VL +   +  I V+ KK 
Sbjct: 125 RGGFIIEDDNGCEYFMPMAQSYLKAQGALGKKVKA------KVLKINEAQNSIIVSRKKL 178

Query: 569 LVKSKL---AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 625
           + +SK+   A ++ + E  D LI +G I KI  +G FV    G+ G    +E+       
Sbjct: 179 IEESKIEKDAKVAQFLE-NDGLI-NGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVN 235

Query: 626 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKLGSLVSGVVDVVTPN 683
           PS+ Y  G  V  +++S   A + ++LS     +   E+  D + +G  ++  V +    
Sbjct: 236 PSNYYAEGDEVTVKVLSYDKAKQHLSLSVKAALSNPWEEIRDELDVGDTIT--VTISNFE 293

Query: 684 AVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNESSN 736
           +   +V      +G +       H+   +  K++  P      G E + +++ LD +   
Sbjct: 294 SYGAFVNLGNDIEGLL-------HISEISWNKNLKNPKDLLTLGDEVNVEVIELDVDKKR 346

Query: 737 LLLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794
           L +S K     + Q+ P +  +  H    +V G V  + E G FV  LG + G     +A
Sbjct: 347 LRVSLK-----NLQEKPFAKFTKEHKVGDIVTGKVATLTEFGAFVT-LGDVDGLLHNEEA 400

Query: 795 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIA 854
                A     Y  G  +   I+ ++ E   I+LS+K     S    F   H        
Sbjct: 401 SWEGNAKCKNLYKKGDELEVKIIKIDKEKENISLSIK-DITDSPAKKFQATHK------- 452

Query: 855 MLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGAT- 913
                              IG +++G + +  DFG+ +  E++ D  G + +   A  T 
Sbjct: 453 -------------------IGDIVKGTIKDLKDFGLFIKLEDNLD--GLVRNEDFAPTTA 491

Query: 914 --VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
             +E G  I+A ++++      V LS+K +   + RE
Sbjct: 492 DNIEIGKEIEAVVVNIDTNRNRVRLSIKRLEQQQERE 528



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 141/319 (44%), Gaps = 45/319 (14%)

Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
            G  VT  VLS +K K+ L L ++     +S+   +I ++     +  GD +   IS   S
Sbjct: 243  GDEVTVKVLSYDKAKQHLSLSVKA---ALSNPWEEIRDE-----LDVGDTITVTISNFES 294

Query: 1273 GVGGLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
               G  V +G  + G +H +E+  N  + +P      G  V  +V+E+    +       
Sbjct: 295  Y--GAFVNLGNDIEGLLHISEISWNKNLKNPKDLLTLGDEVNVEVIELDVDKK------- 345

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
             LR SL  +     +  + +         K+ D     IV G V  +T  G F+ L    
Sbjct: 346  RLRVSLKNLQEKPFAKFTKE--------HKVGD-----IVTGKVATLTEFGAFVTLG--- 389

Query: 1392 DAKVLLSNLSDGYVESPEKE--FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
            D   LL N    +  + + +  +  G  +  +++ ++   + + +++K      A + + 
Sbjct: 390  DVDGLLHNEEASWEGNAKCKNLYKKGDELEVKIIKIDKEKENISLSIKDITDSPAKKFQA 449

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
             +     +GDIV G IK ++ +GLFI +E+ NL GL    + +    DNIE     G+++
Sbjct: 450  TH----KIGDIVKGTIKDLKDFGLFIKLED-NLDGLVRNEDFAPTTADNIEI----GKEI 500

Query: 1510 KVKILKVDKEKRRISLGMK 1528
            +  ++ +D  + R+ L +K
Sbjct: 501  EAVVVNIDTNRNRVRLSIK 519



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            +H E +ED++    ++G + ++  +G FI+     +       ++  Y+++   +  +GK
Sbjct: 105  EHTEDLEDVT----IEGKIISIKPRGGFIIEDD--NGCEYFMPMAQSYLKA---QGALGK 155

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
             V  +VL +      + V+ K     +  + +      L    ++ G IK++ SYG+F+ 
Sbjct: 156  KVKAKVLKINEAQNSIIVSRKKLIEESKIEKDAKVAQFLENDGLINGTIKKITSYGMFVD 215

Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +   +  GL + +E+S     N    Y  G++V VK+L  DK K+ +SL +K++
Sbjct: 216  LGGID--GLVNYNEISYKGPVNPSNYYAEGDEVTVKVLSYDKAKQHLSLSVKAA 267



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 89/439 (20%), Positives = 179/439 (40%), Gaps = 82/439 (18%)

Query: 530 HMSEFEIVKPGK-KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL-AILSSYAEATDRL 587
           H+SE  I   G+ K+KVG  +   + G++ ++ +++HKK L K K  A +  + E  + +
Sbjct: 56  HISEITI--GGEVKYKVGDTIPVILTGIRGEKPSISHKKVLQKEKFDAFVKEHTEDLEDV 113

Query: 588 ITHGWITKIEKHGCF-VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----- 641
              G I  I+  G F +   NG + F P ++  L       +   +G+ VK +++     
Sbjct: 114 TIEGKIISIKPRGGFIIEDDNGCEYFMPMAQSYL------KAQGALGKKVKAKVLKINEA 167

Query: 642 -SSIPASRR--INLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT 698
            +SI  SR+  I  S + K  +V++   ++   L++G +  +T   + V +   G   G 
Sbjct: 168 QNSIIVSRKKLIEESKIEKDAKVAQ--FLENDGLINGTIKKITSYGMFVDL---GGIDGL 222

Query: 699 IPTEHLADHLEHATVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQ 751
           +    ++         K  + P   + +       +L  D    +L LS K +L N  ++
Sbjct: 223 VNYNEIS--------YKGPVNPSNYYAEGDEVTVKVLSYDKAKQHLSLSVKAALSNPWEE 274

Query: 752 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQ 810
           +  +   +     +   + N    G FV     + G    S+ + +    +      +G 
Sbjct: 275 IRDE---LDVGDTITVTISNFESYGAFVNLGNDIEGLLHISEISWNKNLKNPKDLLTLGD 331

Query: 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVE 870
            V   +++++ +  R+ +SLK +      A F +EH                        
Sbjct: 332 EVNVEVIELDVDKKRLRVSLK-NLQEKPFAKFTKEHK----------------------- 367

Query: 871 GFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG--------ATVESGSVIQA 922
              +G ++ GKV    +FG  V+     DV G + H++ A            + G  ++ 
Sbjct: 368 ---VGDIVTGKVATLTEFGAFVTL---GDVDGLL-HNEEASWEGNAKCKNLYKKGDELEV 420

Query: 923 AILDVAKAERLVDLSLKTV 941
            I+ + K +  + LS+K +
Sbjct: 421 KIIKIDKEKENISLSIKDI 439


>gi|229010903|ref|ZP_04168099.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
 gi|423486714|ref|ZP_17463396.1| ribosomal protein S1 [Bacillus cereus BtB2-4]
 gi|423492438|ref|ZP_17469082.1| ribosomal protein S1 [Bacillus cereus CER057]
 gi|423500771|ref|ZP_17477388.1| ribosomal protein S1 [Bacillus cereus CER074]
 gi|423516257|ref|ZP_17492738.1| ribosomal protein S1 [Bacillus cereus HuA2-4]
 gi|423601062|ref|ZP_17577062.1| ribosomal protein S1 [Bacillus cereus VD078]
 gi|423663521|ref|ZP_17638690.1| ribosomal protein S1 [Bacillus cereus VDM022]
 gi|228750303|gb|EEM00133.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
 gi|401155057|gb|EJQ62471.1| ribosomal protein S1 [Bacillus cereus CER074]
 gi|401155922|gb|EJQ63329.1| ribosomal protein S1 [Bacillus cereus CER057]
 gi|401165163|gb|EJQ72482.1| ribosomal protein S1 [Bacillus cereus HuA2-4]
 gi|401231608|gb|EJR38111.1| ribosomal protein S1 [Bacillus cereus VD078]
 gi|401295421|gb|EJS01045.1| ribosomal protein S1 [Bacillus cereus VDM022]
 gi|402438591|gb|EJV70600.1| ribosomal protein S1 [Bacillus cereus BtB2-4]
          Length = 382

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVIVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFADY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    IV+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365


>gi|339448321|ref|ZP_08651877.1| 30S ribosomal protein S1 [Lactobacillus fructivorans KCTC 3543]
          Length = 406

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 6/165 (3%)

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            L P  IV+G V  +T+ G F+ L   +D  V +S +S  +V  P     +G+ V  +VLS
Sbjct: 201  LKPGDIVEGKVARLTNFGAFVDLG-GIDGLVHVSEISYEHVNKPSDVLKVGEEVKVKVLS 259

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1484
            V+P   R+ +++K +     S  E         G ++ G++KR+  +G F+ +    + G
Sbjct: 260  VDPDRNRISLSIKQTQPGPWSDIE----EKAPKGSVLDGKVKRLVDFGAFVEV-FPGVEG 314

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            L H+S++S  H+D    + ++GE VKVK+L V  E+ R++L MK+
Sbjct: 315  LVHISQISHKHIDKPSDVLKSGEDVKVKVLDVQPEEHRLALSMKA 359



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
            +S L  GDIV G++ R+ ++G F+ +   +  GL HVSE+S +HV+    + + GE+VKV
Sbjct: 198  MSTLKPGDIVEGKVARLTNFGAFVDLGGID--GLVHVSEISYEHVNKPSDVLKVGEEVKV 255

Query: 1512 KILKVDKEKRRISLGMKSS 1530
            K+L VD ++ RISL +K +
Sbjct: 256  KVLSVDPDRNRISLSIKQT 274



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +KPG +V+GKV  + +FGA V   GG+  L  +  +S   + KP    KVG E+  +V
Sbjct: 199 STLKPGDIVEGKVARLTNFGAFVDL-GGIDGLVHVSEISYEHVNKPSDVLKVGEEVKVKV 257

Query: 554 LGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V     RI+++ K+T       I     + +   +  G + ++   G FV  + GV+G
Sbjct: 258 LSVDPDRNRISLSIKQTQPGPWSDIEEKAPKGS---VLDGKVKRLVDFGAFVEVFPGVEG 314

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++      +PS +   G+ VK +++   P   R+ LS 
Sbjct: 315 LVHISQISHKHIDKPSDVLKSGEDVKVKVLDVQPEEHRLALSM 357



 Score = 48.9 bits (115), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 153/390 (39%), Gaps = 58/390 (14%)

Query: 571 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG--VQGFAPRSELGLDPGCEPSS 628
           K  LA L +  +     + +G +  I+     V    G  V+G  PR E+       P+S
Sbjct: 10  KDLLAALDNIKQVNVGYVVNGEVLAIDDDQQLVVGIEGAGVEGVIPRKEISAQREDNPTS 69

Query: 629 MYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---DDLVKLGSLVSGVVDVVTPNAV 685
            Y VG  VK  ++S I   +    S+++   R+      D +K  +     ++V    AV
Sbjct: 70  NYKVGDKVKVVVVSRIGDDKE-GGSYLLSIRRLEALKVWDEIKEKADKGETINVTVTRAV 128

Query: 686 VVYVI-----AKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
              ++      +G+   ++ T+H  D L            G E +  ++      N L+ 
Sbjct: 129 KGGLVVNADGVRGFIPASMITDHFVDDLNQFK--------GQELEVKIIEVVPEENRLIL 180

Query: 741 AKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
           +  ++  + ++   D   S + P  +V G V  +   G FV  LG + G    S+     
Sbjct: 181 SHRAIAEAERKEARDRIMSTLKPGDIVEGKVARLTNFGAFVD-LGGIDGLVHVSEISYEH 239

Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS 858
               S    VG+ V+  +L V+ +  RI+LS+KQ+               +EEK      
Sbjct: 240 VNKPSDVLKVGEEVKVKVLSVDPDRNRISLSIKQTQPGPWSD--------IEEKAPK--- 288

Query: 859 SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--- 915
                           GSV++GKV    DFG  V  E    V G +   Q++   ++   
Sbjct: 289 ----------------GSVLDGKVKRLVDFGAFV--EVFPGVEGLVHISQISHKHIDKPS 330

Query: 916 ----SGSVIQAAILDVAKAERLVDLSLKTV 941
               SG  ++  +LDV   E  + LS+K +
Sbjct: 331 DVLKSGEDVKVKVLDVQPEEHRLALSMKAL 360



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 27/209 (12%)

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            + D + + +  GDIV G++++ L+  G  V   G  + G VH +E+    V+ P      
Sbjct: 193  ARDRIMSTLKPGDIVEGKVAR-LTNFGAFVDLGG--IDGLVHVSEISYEHVNKPSDVLKV 249

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP- 1367
            G+ VK KVL +         + LS++ +  G  S                   IE+ +P 
Sbjct: 250  GEEVKVKVLSVDPD---RNRISLSIKQTQPGPWSD------------------IEEKAPK 288

Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1427
              ++ G VK +   G F+ +   ++  V +S +S  +++ P      G+ V  +VL V+P
Sbjct: 289  GSVLDGKVKRLVDFGAFVEVFPGVEGLVHISQISHKHIDKPSDVLKSGEDVKVKVLDVQP 348

Query: 1428 LSKRVEVTLKT--SDSRTASQSEINNLSN 1454
               R+ +++K    D R   ++   N+S+
Sbjct: 349  EEHRLALSMKALEKDPRDDQKAPKKNVSD 377



 Score = 42.7 bits (99), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 148/352 (42%), Gaps = 31/352 (8%)

Query: 496 VKPGMVVKGKVIAVDSFGA-IVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVF-- 551
           V  G VV G+V+A+D     +V   G GV+ + P   +S      P   +KVG ++    
Sbjct: 22  VNVGYVVNGEVLAIDDDQQLVVGIEGAGVEGVIPRKEISAQREDNPTSNYKVGDKVKVVV 81

Query: 552 --RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT-HGWITKIEKHGCFVRFYNG 608
             R+   K     +   + L    L +     E  D+  T +  +T+  K G  V   +G
Sbjct: 82  VSRIGDDKEGGSYLLSIRRL--EALKVWDEIKEKADKGETINVTVTRAVKGGLVVN-ADG 138

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDL 666
           V+GF P S +  D   +  + +  GQ ++ +I+  +P   R+ LS   + +  R    D 
Sbjct: 139 VRGFIPASMI-TDHFVDDLNQFK-GQELEVKIIEVVPEENRLILSHRAIAEAERKEARDR 196

Query: 667 V----KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
           +    K G +V G V  +T     V +   G   G +    ++   EH      V+K G 
Sbjct: 197 IMSTLKPGDIVEGKVARLTNFGAFVDL---GGIDGLVHVSEIS--YEHVNKPSDVLKVGE 251

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFV 779
           E   ++L +D + + + LS K +     Q  P SD     P  SV+ G V  +++ G FV
Sbjct: 252 EVKVKVLSVDPDRNRISLSIKQT-----QPGPWSDIEEKAPKGSVLDGKVKRLVDFGAFV 306

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
                + G    S+         S     G+ V+  +LDV  E  R+ LS+K
Sbjct: 307 EVFPGVEGLVHISQISHKHIDKPSDVLKSGEDVKVKVLDVQPEEHRLALSMK 358


>gi|289550745|ref|YP_003471649.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis HKU09-01]
 gi|315658241|ref|ZP_07911113.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590]
 gi|385784373|ref|YP_005760546.1| putative 30S ribosomal protein S1 [Staphylococcus lugdunensis
            N920143]
 gi|418414047|ref|ZP_12987263.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis ACS-027-V-Sch2]
 gi|289180277|gb|ADC87522.1| SSU ribosomal protein S1p [Staphylococcus lugdunensis HKU09-01]
 gi|315496570|gb|EFU84893.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis M23590]
 gi|339894629|emb|CCB53913.1| putative 30S ribosomal protein S1 [Staphylococcus lugdunensis
            N920143]
 gi|410877685|gb|EKS25577.1| 30S ribosomal protein S1 [Staphylococcus lugdunensis ACS-027-V-Sch2]
          Length = 392

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 184/401 (45%), Gaps = 60/401 (14%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            D+  G ++TG V +V+++  ++ I+   K    I  S      +        +G ++  +
Sbjct: 12   DIKEGDKITGEVQQVEDKQVVVHINGG-KYNGIIPISQLSTHHIDNPNEVVSVGDSIEAY 70

Query: 1220 V--LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
            V  + +++E +    +L   Q        + S + +Q  ++  +++  ++++++ G  GL
Sbjct: 71   VTKIEVDEENESGAYILSKRQ-----LETEKSYEYLQEKLNNDEVIEAKVTEVVKG--GL 123

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1337
            VV +G    G V  + +    + D  S +D GQ +K KV E+         V LS ++  
Sbjct: 124  VVDVGQR--GFVPASLISTDFIED-FSVFD-GQTIKIKVEELEPEKN---RVILSRKAVE 176

Query: 1338 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1397
               +    + L             ++ L+   +++G V  +T+ G FI +   +D  V +
Sbjct: 177  QAENEVKKASL-------------LDSLNAGDVIKGKVARLTNFGAFIDIG-GVDGLVHV 222

Query: 1398 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV----TLKTSDSRTASQSEINNLS 1453
            S LS  +V+SPE    +G+ V  +V SVE  S+R+ +    TL T   R   Q       
Sbjct: 223  SELSHEHVDSPEDVVSVGQEVEVKVKSVEKDSERISLSIKDTLPTPFERIKGQ------- 275

Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
              H GD++ G + R+ ++G F+ +    + GL H+SE+   H+ +       G++V VKI
Sbjct: 276  -FHEGDVIEGTVVRLAAFGAFVEVA-PGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKI 333

Query: 1514 LKVDKEKRRISLGMKS----------------SYFKNDADN 1538
            L VD++  RISL +K+                SY  ND+D+
Sbjct: 334  LGVDEDNERISLSIKATLPNEDVIESDEATTQSYIDNDSDD 374



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 24/260 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
           ++KV  V +G GL++D+      P++ +ST  ++    V + +  K++ +  E    RV 
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTD-FIEDFSVFDGQTIKIKVEELEPEKNRV- 168

Query: 467 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 526
           IL  + +E     + KAS  + L         G V+KGKV  + +FGA +   GGV  L 
Sbjct: 169 ILSRKAVEQAENEVKKASLLDSL-------NAGDVIKGKVARLTNFGAFIDI-GGVDGLV 220

Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT 584
            +  +S   +  P     VG E+  +V  V+  S+RI+++ K TL      I   + E  
Sbjct: 221 HVSELSHEHVDSPEDVVSVGQEVEVKVKSVEKDSERISLSIKDTLPTPFERIKGQFHEGD 280

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
              +  G + ++   G FV    GVQG    SE+       PS     GQ V  +I+   
Sbjct: 281 ---VIEGTVVRLAAFGAFVEVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVD 337

Query: 645 PASRRINLSFMMKPTRVSED 664
             + RI+LS  +K T  +ED
Sbjct: 338 EDNERISLS--IKATLPNED 355



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  + G+V  V+    +V   GG    + P+  +S   I  P +   VG  +   
Sbjct: 11  NDIKEGDKITGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIDNPNEVVSVGDSIEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEVDEENESGAYILSKRQLETEKSYEYLQEKLNNDEVIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---- 664
            +GF P S +  D   E  S++  GQ +K ++    P   R+ LS   K    +E+    
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIKIKVEELEPEKNRVILS--RKAVEQAENEVKK 184

Query: 665 ----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
               D +  G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASLLDSLNAGDVIKGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVDSPEDVVSV 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G E + ++  ++ +S  + LS K +L    +++       H   V+ G V  +   G FV
Sbjct: 240 GQEVEVKVKSVEKDSERISLSIKDTLPTPFERI---KGQFHEGDVIEGTVVRLAAFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
                + G    S+         S+    GQ V   IL V+ +  RI+LS+K + 
Sbjct: 297 EVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVDEDNERISLSIKATL 351



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G V++G V+ + +FGA V+   GV+ L  +  +    I  P +K + G ++  ++LGV  
Sbjct: 279 GDVIEGTVVRLAAFGAFVEVAPGVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGVDE 338

Query: 557 KSKRITVTHKKTL-----VKSKLAILSSY 580
            ++RI+++ K TL     ++S  A   SY
Sbjct: 339 DNERISLSIKATLPNEDVIESDEATTQSY 367


>gi|227505035|ref|ZP_03935084.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
 gi|227198399|gb|EEI78447.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
          Length = 486

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 128/257 (49%), Gaps = 28/257 (10%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL++ IG   +      E++ +   +P  G    Q ++ K++E+ +      +V LS R
Sbjct: 134  GGLILDIGLRGFLPASLVEMRRVRDLEPYIG----QELEAKIIELDKQRN---NVVLSRR 186

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + L+   S   S+              +  L    + +G V ++ + G F+ L   +D  
Sbjct: 187  AFLEQTQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGL 232

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      + 
Sbjct: 233  VHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFAR 287

Query: 1455 LH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             H VG IV G++ ++  +G F+ +E   + GL H+SEL++ HV+  + +   G++V VK+
Sbjct: 288  THAVGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAQRHVEVPDQVVTVGQEVMVKV 346

Query: 1514 LKVDKEKRRISLGMKSS 1530
            + +D E+RRISL +K +
Sbjct: 347  IDIDLERRRISLSVKQA 363



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVEEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           ++G    SEL       P  +  VGQ V  +++      RRI+LS
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLS 359



 Score = 46.6 bits (109), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  +VG ++   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVEVGDQIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +     A +  +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGAVEEL-HAKEEPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      EP    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLEP----YIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+          +   VGQ V   ++D++ E  RI+LS+KQ+     D  + +
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVTVGQEVMVKVIDIDLERRRISLSVKQA-----DEDYTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W+EG+
Sbjct: 370 E--FDPSKYGMADSYDEQGNYVFPEGFDPETNEWLEGY 405



 Score = 41.6 bits (96), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 113/259 (43%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R      +IG+ +   ++ ++K++  + L  R F +     
Sbjct: 136  LILDIGLRGFLPASLVEMRRVRDLEPYIGQELEAKIIELDKQRNNVVLSRRAFLE----- 190

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                 ++    F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 191  --QTQSEVRSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 245

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 246  PSEVVTVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRVFAR 287

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
                +   IV G V  +   G F+ +   ++  V +S L+  +VE P++   +G+ V  +
Sbjct: 288  TH--AVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVTVGQEVMVK 345

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ +++K +D
Sbjct: 346  VIDIDLERRRISLSVKQAD 364


>gi|455646857|gb|EMF25877.1| 30S ribosomal protein S1 [Streptomyces gancidicus BKS 13-15]
          Length = 497

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 127/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQIG--QVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQAN 369


>gi|384449426|ref|YP_005662028.1| 30S ribosomal protein S1 [Chlamydophila pneumoniae LPCoLN]
 gi|269303190|gb|ACZ33290.1| ribosomal protein S1 [Chlamydophila pneumoniae LPCoLN]
          Length = 580

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 178/390 (45%), Gaps = 62/390 (15%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            +SIG+   G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVLGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
                G  ++I   + G +H +E+   KNI   DP    ++G  V+  VL I +       
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV--DPSEVVNKGDEVEAIVLSIQKD-----E 367

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
             ++SL     G+  T  +        P  ++E  E     + V   +KN+T+ G F+ L 
Sbjct: 368  GKISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVNAEIKNLTNYGAFVELE 412

Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +K   S   ++ 
Sbjct: 413  PGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNEI 472

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
            E    +    G ++ G + ++ ++G F+ ++N  + GL HVSELS+     IE I   GE
Sbjct: 473  E----AMFPAGTVISGVVTKITAFGAFVELQN-GIEGLIHVSELSDKPFAKIEDIISIGE 527

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDAD 1537
             V  K++K+D + +++SL +K     N  D
Sbjct: 528  NVSAKVIKLDPDHKKVSLSVKEYLADNAYD 557



 Score = 67.0 bits (162), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 142/288 (49%), Gaps = 38/288 (13%)

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKC 1314
             EG IV G+I++ + G  GL+V IG   +    ++   ++KN      L  Y  G+  + 
Sbjct: 132  EEGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEF 182

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K+L+I+   R   +V +S R  L+    +  ++L             IE +S     +G 
Sbjct: 183  KILKINVERR---NVVVSRRELLEAERISKKAEL-------------IEQISIGEYRKGV 226

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            VKN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV +
Sbjct: 227  VKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVAL 285

Query: 1435 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-- 1492
             LK  +       E         G  V+G+I ++  YG FI IE   + GL HVSE+S  
Sbjct: 286  GLKQKEHNPWEDIE----KKYPPGKRVLGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWV 340

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            ++ VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 341  KNIVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
           G+ V  ++  + ++GA V+   G++ L  +  MS  + V  P + FK G  +   +L V 
Sbjct: 392 GLHVNAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVD 451

Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            +SK+IT+  K+        I + +   T   +  G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEAMFPAGT---VISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           SEL   P  +   +  +G+ V  +++   P  ++++LS
Sbjct: 509 SELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLS 546



 Score = 45.1 bits (105), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 140/350 (40%), Gaps = 32/350 (9%)

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 560
           KG V  +  FG  +   G +  L  +  M+   I  P +  ++  EL   +L V  +  R
Sbjct: 224 KGVVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGR 282

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 620
           + +  K+        I   Y      L   G I K+  +G F+    G++G    SE+  
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPGKRVL---GKIVKLLPYGAFIEIEEGIEGLIHVSEMSW 339

Query: 621 DPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 675
                +PS + + G  V+  ++S      +I+L   +K T  +  D ++    +G  V+ 
Sbjct: 340 VKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTEHNPWDNIEEKYPIGLHVNA 397

Query: 676 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 728
            +  +T      +V  +   +G I       H+   + +K V  P   F +       +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGNSVEAVIL 448

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D ES  + L  K    N   ++    +     +V+ G V  I   G FV     + G 
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI---EAMFPAGTVISGVVTKITAFGAFVELQNGIEGL 505

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
              S+  D   A +     +G++V + ++ ++ +  +++LS+K+    + 
Sbjct: 506 IHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNA 555



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 95/478 (19%), Positives = 193/478 (40%), Gaps = 72/478 (15%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           + ++++PG ++KG V+ ++    +V    G+K+   +P MSEF  +   +   +GAE+  
Sbjct: 45  SDNEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLVLGAEVEV 99

Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
            +   + +  ++ ++ +K   + +   + ++ E     I  G IT+  K G  V    G+
Sbjct: 100 YLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GM 155

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED-- 664
           + F P S++  D     +   +VG+V + +I+  I   RR   ++   +++  R+S+   
Sbjct: 156 EAFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVERRNVVVSRRELLEAERISKKAE 212

Query: 665 --DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
             + + +G    GVV  +T   V  ++   G       T+     + H + M        
Sbjct: 213 LIEQISIGEYRKGVVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------V 263

Query: 723 EFDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGC 777
           E +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G 
Sbjct: 264 ELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVLGKIVKLLPYGA 320

Query: 778 FVRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           F+     + G    S+    +   D S+    G  V + +L +  + G+I+L LKQ+  +
Sbjct: 321 FIEIEEGIEGLIHVSEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTEHN 380

Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
             D         +EEK                   + IG  +  ++    ++G  V  E 
Sbjct: 381 PWDN--------IEEK-------------------YPIGLHVNAEIKNLTNYGAFVELEP 413

Query: 897 ------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
                 H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 414 GIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNE 471


>gi|334136644|ref|ZP_08510104.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
 gi|333605843|gb|EGL17197.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
          Length = 418

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 181/372 (48%), Gaps = 41/372 (11%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            V  G  V G + KV+ + A++ I       + + +      +++   +    G+ +   +
Sbjct: 27   VKKGDIVKGKIIKVEQDQAIVDIGYKYDGTIPLRE--LSSVQIENADQAVQEGQEIELKI 84

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLV 1278
            ++I+  K+  +LVL       S ++VD     + +Q  + E  I+   +++++ G  GLV
Sbjct: 85   VTIDDNKE--KLVL-------SKRSVDSEKAWETLQQKLDEKVIIEAVVAEVVKG--GLV 133

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V +G  + G V  + ++   V D  S Y +G+ ++ +V EI R       V LS +  LD
Sbjct: 134  VDVG--VRGFVPASMVERSFVED-FSDY-KGRTLRLRVKEIDRE---KNKVILSQKDVLD 186

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
                    D+ + ++  GK            + +G V+ +T  G F+ +   +D  V +S
Sbjct: 187  EEYEAQKKDIISKIEV-GK------------VYEGTVQRLTQFGAFVDIG-GIDGLVHIS 232

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1458
             ++  +VE P +    G  V+ +VL V+P   +V ++LK +      ++E         G
Sbjct: 233  EMAWHHVEHPSEIVKEGDKVSVQVLKVDPEKDKVSLSLKATQEGPWEKAE----KTFTTG 288

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
            +I+ G +KR+  +G F+ I    + GL H+S+++  H+   + + + G++VKVK+L V+ 
Sbjct: 289  EIITGTVKRLAGFGAFVEI-APGVEGLVHISQIAHRHIATPQEVLKEGQEVKVKVLDVNA 347

Query: 1519 EKRRISLGMKSS 1530
             ++R+SL +K +
Sbjct: 348  AEKRVSLSIKET 359



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 150/348 (43%), Gaps = 25/348 (7%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           VK G +VKGK+I V+   AIV          PL  +S  +I    +  + G E+  +++ 
Sbjct: 27  VKKGDIVKGKIIKVEQDQAIVDIGYKYDGTIPLRELSSVQIENADQAVQEGQEIELKIVT 86

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           +   +  +   K  V S+ A  +   +  +++I    + ++ K G  V    GV+GF P 
Sbjct: 87  IDDNKEKLVLSKRSVDSEKAWETLQQKLDEKVIIEAVVAEVVKGGLVVDV--GVRGFVPA 144

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDL---VKL 669
           S +      E  S Y  G+ ++ R+        ++ LS    + +     + D+   +++
Sbjct: 145 S-MVERSFVEDFSDYK-GRTLRLRVKEIDREKNKVILSQKDVLDEEYEAQKKDIISKIEV 202

Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QL 727
           G +  G V  +T     V +   G   G +    +A  H+EH +    ++K G +   Q+
Sbjct: 203 GKVYEGTVQRLTQFGAFVDI---GGIDGLVHISEMAWHHVEHPS---EIVKEGDKVSVQV 256

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASH--IHPNSVVHGYVCNIIETGCFVRFLGRL 785
           L +D E   + LS K     + Q+ P + +        ++ G V  +   G FV     +
Sbjct: 257 LKVDPEKDKVSLSLK-----ATQEGPWEKAEKTFTTGEIITGTVKRLAGFGAFVEIAPGV 311

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+      A   +    GQ V+  +LDVN+   R++LS+K++
Sbjct: 312 EGLVHISQIAHRHIATPQEVLKEGQEVKVKVLDVNAAEKRVSLSIKET 359


>gi|291440269|ref|ZP_06579659.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
 gi|291343164|gb|EFE70120.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
          Length = 497

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VAVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|423637751|ref|ZP_17613404.1| ribosomal protein S1 [Bacillus cereus VD156]
 gi|401273012|gb|EJR79000.1| ribosomal protein S1 [Bacillus cereus VD156]
          Length = 382

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 176/398 (44%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R           
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDREKNRVI----- 164

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
                   +S     +L  D     K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 165  -------LSHKAVVELELD----SKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G IKR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVIKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          ++   +A D  I  G I ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGEIKAGD--IREGVIKRLVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354


>gi|261406030|ref|YP_003242271.1| RNA-binding S1 domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261282493|gb|ACX64464.1| RNA binding S1 domain protein [Paenibacillus sp. Y412MC10]
          Length = 405

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 170/377 (45%), Gaps = 57/377 (15%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G + K+++  A ++I       + + +      +L        +G+ V   V+SI
Sbjct: 26   GDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRE--LSSVQLDNASDAVQVGQEVECKVVSI 83

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
            N +K+ L L         S + +D  N  D ++    + D+    ++ ++ G  GLV  +
Sbjct: 84   NDDKESLVL---------SKRAIDTENSWDELEKHFADQDVFEVTVADVVKG--GLVADV 132

Query: 1282 G-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            G     P      HF E          S Y +G+ ++ KV E+ R       V LS +  
Sbjct: 133  GARGFIPASMVERHFVE--------DFSDY-KGRTLRVKVKELDRE---NNKVILSQKDV 180

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
            L+     N   +             + +L    +++G V+ +T  G F+ +   +D  V 
Sbjct: 181  LEEEFEANKQKV-------------MSELQDGQVLEGTVQRLTQFGAFVDVG-GVDGLVH 226

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS---RTASQSEINNLS 1453
            +S ++  +V+ P      G  V  +VL V+P   ++ +++K +      TA +       
Sbjct: 227  VSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGE------- 279

Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
              + GDIV G +KR+ ++G F+ +    + GL H+S++S  H+   + + + G++V+VK+
Sbjct: 280  QFNTGDIVTGVVKRLVTFGAFVELA-PGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKV 338

Query: 1514 LKVDKEKRRISLGMKSS 1530
            L ++  ++RISL +K +
Sbjct: 339  LDINTSEQRISLSIKET 355



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 127/277 (45%), Gaps = 33/277 (11%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            + +GD V G I K+        V IG    G +   EL ++ + +       GQ V+CKV
Sbjct: 23   LKKGDTVKGTIVKLEDNQA--YVSIGYKYDGVIPVRELSSVQLDNASDAVQVGQEVECKV 80

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHL---EKIEDLSPNMIVQG 1373
            + I+             + SL  + S  + D     D   KH    +  E    +++  G
Sbjct: 81   VSINDD-----------KESL--VLSKRAIDTENSWDELEKHFADQDVFEVTVADVVKGG 127

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V +V ++G FI  S  +  +  + + SD            G+ +  +V  ++  + +V 
Sbjct: 128  LVADVGARG-FIPAS--MVERHFVEDFSDYK----------GRTLRVKVKELDRENNKVI 174

Query: 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            ++ K         ++   +S L  G ++ G ++R+  +G F+ +   +  GL HVSE++ 
Sbjct: 175  LSQKDVLEEEFEANKQKVMSELQDGQVLEGTVQRLTQFGAFVDVGGVD--GLVHVSEIAW 232

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HVD    +   G++V+VK+LKVD EK +ISL +K++
Sbjct: 233  SHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAA 269



 Score = 49.7 bits (117), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 134/361 (37%), Gaps = 50/361 (13%)

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G I K+E +  +V       G  P  EL        S    VGQ V+C+++S       +
Sbjct: 31  GTIVKLEDNQAYVSIGYKYDGVIPVRELSSVQLDNASDAVQVGQEVECKVVSINDDKESL 90

Query: 651 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
            LS     T  S D+L K  +    V +V   + V   ++A   ++G IP   +  H   
Sbjct: 91  VLSKRAIDTENSWDELEKHFAD-QDVFEVTVADVVKGGLVADVGARGFIPASMVERHFVE 149

Query: 711 ATVMKSVIKPGYEFDQLLV----LDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVV 765
                      Y+   L V    LD E++ ++LS K  L    +       S +    V+
Sbjct: 150 DF-------SDYKGRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQKVMSELQDGQVL 202

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
            G V  + + G FV  +G + G    S+         S     G  VR  +L V+ E G+
Sbjct: 203 EGTVQRLTQFGAFVD-VGGVDGLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPEKGK 261

Query: 826 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
           I+LS+K +     + +  Q                           F  G ++ G V   
Sbjct: 262 ISLSIKAAAPGPWETAGEQ---------------------------FNTGDIVTGVVKRL 294

Query: 886 NDFGVVVSFEEHSDVYGF-----ITHHQLAGA--TVESGSVIQAAILDVAKAERLVDLSL 938
             FG  V       V G      I+H  +      ++ G  +Q  +LD+  +E+ + LS+
Sbjct: 295 VTFGAFVEL--APGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRISLSI 352

Query: 939 K 939
           K
Sbjct: 353 K 353



 Score = 46.2 bits (108), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S+++ G V++G V  +  FGA V   GGV  L  +  ++   + KP      G ++  +V
Sbjct: 194 SELQDGQVLEGTVQRLTQFGAFVDV-GGVDGLVHVSEIAWSHVDKPSDVLSEGDQVRVKV 252

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKH----GCFVRFYNGV 609
           L V  ++  ++     +  K A    +  A ++  T   +T + K     G FV    GV
Sbjct: 253 LKVDPEKGKIS-----LSIKAAAPGPWETAGEQFNTGDIVTGVVKRLVTFGAFVELAPGV 307

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           +G    S++       P  +   GQ V+ +++    + +RI+LS 
Sbjct: 308 EGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRISLSI 352



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
             V +S++A   V K      EG  VRV++L     +G  +  +KA+A            
Sbjct: 223 GLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGEQFN 282

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
            G +V G V  + +FGA V+   GV+ L  +  +S   I  P +  K G E+  +VL + 
Sbjct: 283 TGDIVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDIN 342

Query: 558 S--KRITVTHKKT 568
           +  +RI+++ K+T
Sbjct: 343 TSEQRISLSIKET 355



 Score = 44.7 bits (104), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 86/188 (45%), Gaps = 23/188 (12%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            + +G ++ G + ++     G  V +G  + G VH +E+    V  P     EG  V+ KV
Sbjct: 196  LQDGQVLEGTVQRLTQF--GAFVDVG-GVDGLVHVSEIAWSHVDKPSDVLSEGDQVRVKV 252

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L++    +G   + LS++++                  PG      E  +   IV G VK
Sbjct: 253  LKVDPE-KG--KISLSIKAA-----------------APGPWETAGEQFNTGDIVTGVVK 292

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             + + G F+ L+  ++  V +S +S  ++ +P++    G+ V  +VL +    +R+ +++
Sbjct: 293  RLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRISLSI 352

Query: 1437 KTSDSRTA 1444
            K ++   A
Sbjct: 353  KETEEAPA 360


>gi|423610022|ref|ZP_17585883.1| ribosomal protein S1 [Bacillus cereus VD107]
 gi|401249339|gb|EJR55645.1| ribosomal protein S1 [Bacillus cereus VD107]
          Length = 382

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 182/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ I        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNIG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEDDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTEY-KGKALAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++            ++D+  K  E I  L    IV+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-----------QELDSKKK--EAISSLKEGDIVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
            S +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++V VK
Sbjct: 269  SEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPSEVLEMGQEVTVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  SD A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVIEDYSQYEPNSDSA 365



 Score = 43.1 bits (100), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 150/360 (41%), Gaps = 37/360 (10%)

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMNSKELQVGDVVTGSVTKVEEKQVLVNIGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEDDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--- 666
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS       V E +L   
Sbjct: 125 RGFIPASLVEVHY-VEDFTEYK-GKALAVKIVELDREKNRVILSH----KAVVEQELDSK 178

Query: 667 -------VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SV 717
                  +K G +V G V  +T     V V   G   G +   H++  + H  V +   V
Sbjct: 179 KKEAISSLKEGDIVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEV 231

Query: 718 IKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIE 774
           ++ G +   ++L +D ++  + LS     I +AQ  P +  AS I    +  G V  ++ 
Sbjct: 232 LEQGQKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVASEIKAGDIREGVVKRLVT 286

Query: 775 TGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            G FV  L  + G    S+  +    + S+   +GQ V   +L+V+    RI+LS+K++ 
Sbjct: 287 FGAFVEILPGVEGLVHVSQIANRHVKNPSEVLEMGQEVTVKVLEVHVAEKRISLSIKEAL 346


>gi|300787975|ref|YP_003768266.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei U32]
 gi|384151397|ref|YP_005534213.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
 gi|399539858|ref|YP_006552520.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
 gi|299797489|gb|ADJ47864.1| small subunit ribosomal protein S1 [Amycolatopsis mediterranei U32]
 gi|340529551|gb|AEK44756.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
 gi|398320628|gb|AFO79575.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
          Length = 499

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 127/257 (49%), Gaps = 28/257 (10%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL++ IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R
Sbjct: 143  GGLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRR 195

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + L+   S   S+              +  L+   + +G V ++ + G F+ L   +D  
Sbjct: 196  AYLEQTQSEVRSEF-------------LNALAKGQVRKGVVSSIVNFGAFVDLG-GVDGL 241

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      + 
Sbjct: 242  VHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQ-----FAR 296

Query: 1455 LH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  E + +    V VK+
Sbjct: 297  THAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEIPEQVVQVNGDVMVKV 355

Query: 1514 LKVDKEKRRISLGMKSS 1530
            + +D E+RRISL +K +
Sbjct: 356  IDIDLERRRISLSLKQA 372



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 148/368 (40%), Gaps = 52/368 (14%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
           D  I  G I K+++    +      +G  P  EL +    +P+ +  VG  V+  ++   
Sbjct: 42  DGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKE 101

Query: 645 PASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPT 701
               R+ LS      +    + ++L +    V G V  V    +++ +  +G+    +P 
Sbjct: 102 DKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEVVKGGLILDIGLRGF----LP- 156

Query: 702 EHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHI 759
              A  +E   V       G E + +++ LD   +N++LS +  L  +  ++ S+  + +
Sbjct: 157 ---ASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNAL 213

Query: 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
               V  G V +I+  G FV  LG + G    S+         S+   VGQ V   +LDV
Sbjct: 214 AKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDV 272

Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
           + +  R++LSLK +        F + H                           IG ++ 
Sbjct: 273 DMDRERVSLSLK-ATQEDPWRQFARTH--------------------------AIGQIVP 305

Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE--------SGSVIQAAILDVAKAE 931
           GKV +   FG  V  EE   + G +   +LA   VE        +G V+   ++D+    
Sbjct: 306 GKVTKLVPFGAFVRVEEG--IEGLVHISELAERHVEIPEQVVQVNGDVM-VKVIDIDLER 362

Query: 932 RLVDLSLK 939
           R + LSLK
Sbjct: 363 RRISLSLK 370



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 150/358 (41%), Gaps = 32/358 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 43  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPAEVVTVGDEVEALVLQKED 102

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 103 KEGRLILSKKRAQYERAWGTIEELKEKDEPV--KGTVIEVVKGGLILDI--GLRGFLPAS 158

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 159 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRSEFLNALA 214

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 215 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 268

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 269 VLDVDMDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 324

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST-DASF 842
            G    S+  +       +   V   V   ++D++ E  RI+LSLKQ+    T D  F
Sbjct: 325 EGLVHISELAERHVEIPEQVVQVNGDVMVKVIDIDLERRRISLSLKQANEGVTPDTEF 382



 Score = 41.6 bits (96), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 115/266 (43%), Gaps = 34/266 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +     ++
Sbjct: 145  LILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY----LEQ 200

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 201  TQSEVRSEFLNALAKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 257

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++ +                P +   +   
Sbjct: 258  VVEVGQEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRQFARTHA 299

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    IV G V  +   G F+ +   ++  V +S L++ +VE PE+   +   V  +V+ 
Sbjct: 300  I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVMVKVID 357

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEIN 1450
            ++   +R+ ++LK ++      +E +
Sbjct: 358  IDLERRRISLSLKQANEGVTPDTEFD 383


>gi|256371862|ref|YP_003109686.1| RNA binding S1 domain-containing protein [Acidimicrobium ferrooxidans
            DSM 10331]
 gi|256008446|gb|ACU54013.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 427

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 170/382 (44%), Gaps = 56/382 (14%)

Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
            F+E D+     V+G V KVD +  LL I    K++  I         L+E   R  +  A
Sbjct: 49   FDEGDI-----VSGLVVKVDKDEVLLDIG--YKSEGVI--------PLRELSIRKDVSPA 93

Query: 1216 VTGHV------LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
                V      L + KE +  RLVL   +        +I     +  +  G+++   + K
Sbjct: 94   DVVSVGDRIDALVLQKEDREGRLVLSKKRAQFEKAWKEIEAIKARDGVVRGEVI--EVVK 151

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
                 GGL+V IG   +      +L+ +    P  G D    ++ K++E+ R   G  +V
Sbjct: 152  -----GGLIVDIGLRGFLPASHVDLRRVRDLAPFVGQD----IEAKIIELDR---GRNNV 199

Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
             LS R+ L+           T +              P  + +G V ++   G F+ L  
Sbjct: 200  VLSRRAYLEENQRDQRERFLTSI-------------RPGEVRKGVVSSIVHFGVFVDLG- 245

Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
             +D  V +S LS  +V+ P     +G  V   VL V+   +R+ ++LK +      +   
Sbjct: 246  GMDGLVHVSELSWNHVDHPSSVVSVGDEVQVLVLEVDQEHERISLSLKAT-----QRDPW 300

Query: 1450 NNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEK 1508
               ++ H +G++V G++ ++  +G F+ +    + GL H+SE++  HVD  E +   GE+
Sbjct: 301  QEFASAHKIGELVYGRVTKIVPFGCFVQV-APGIEGLVHISEMALHHVDLPEQVVSVGEE 359

Query: 1509 VKVKILKVDKEKRRISLGMKSS 1530
            + VKI+ +D  +RRISL ++ +
Sbjct: 360  LWVKIIDLDPGRRRISLSIRQA 381



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + ++PG V KG V ++  FG  V   GG+  L  +  +S   +  P     VG E+   V
Sbjct: 220 TSIRPGEVRKGVVSSIVHFGVFVDL-GGMDGLVHVSELSWNHVDHPSSVVSVGDEVQVLV 278

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V  + +RI+++ K T         S++       + +G +TKI   GCFV+   G++G
Sbjct: 279 LEVDQEHERISLSLKATQRDPWQEFASAHKIGE---LVYGRVTKIVPFGCFVQVAPGIEG 335

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+ L     P  +  VG+ +  +I+   P  RRI+LS 
Sbjct: 336 LVHISEMALHHVDLPEQVVSVGEELWVKIIDLDPGRRRISLSI 378



 Score = 57.4 bits (137), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 160/361 (44%), Gaps = 29/361 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + PL  +S  + V P     VG  +   VL  + 
Sbjct: 52  GDIVSGLVVKVDKDEVLLDIGYKSEGVIPLRELSIRKDVSPADVVSVGDRIDALVLQKED 111

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +  R+ ++ K+   +     + +  +A D ++  G + ++ K G  V    G++GF P S
Sbjct: 112 REGRLVLSKKRAQFEKAWKEIEAI-KARDGVV-RGEVIEVVKGGLIVDI--GLRGFLPAS 167

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
            + L    + +    VGQ ++ +I+      +++  SRR  L    +  R      ++ G
Sbjct: 168 HVDLRRVRDLAPF--VGQDIEAKIIELDRGRNNVVLSRRAYLEENQRDQRERFLTSIRPG 225

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQLLV 729
            +  GVV  +    V V +   G   G +    L+ +H++H +   SV+  G E  Q+LV
Sbjct: 226 EVRKGVVSSIVHFGVFVDL---GGMDGLVHVSELSWNHVDHPS---SVVSVGDEV-QVLV 278

Query: 730 L--DNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           L  D E   + LS K +  +  Q+    AS      +V+G V  I+  GCFV+    + G
Sbjct: 279 LEVDQEHERISLSLKATQRDPWQEF---ASAHKIGELVYGRVTKIVPFGCFVQVAPGIEG 335

Query: 788 FAPRSKAVDGQRADL-SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
               S+       DL  +   VG+ +   I+D++    RI+LS++Q+      A   +E 
Sbjct: 336 LVHISEMA-LHHVDLPEQVVSVGEELWVKIIDLDPGRRRISLSIRQALEGGELAPEYREA 394

Query: 847 F 847
           F
Sbjct: 395 F 395


>gi|453378894|dbj|GAC86206.1| 30S ribosomal protein S1 [Gordonia paraffinivorans NBRC 108238]
          Length = 483

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 183/403 (45%), Gaps = 53/403 (13%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            +I    + V++IG+   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TISSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +P E+        +G  V   VL+  KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPHEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    + + V G + +++ G  GL++ IG   +      E++ +    P  G + 
Sbjct: 112  AWGTIEELKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
               ++ K++E+ +      +V LS R+ L+   S   S+              +  L   
Sbjct: 169  ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LHQLQKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDLD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      Q      +  H +G IV G++ ++  +G F+ + +  + GL H
Sbjct: 269  RERVSLSLKATQEDPWRQ-----FARTHAIGQIVPGKVTKLVPFGAFVRV-DEGIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +SEL+E HV+  + +   G+   VK++ +D E+RRISL +K +
Sbjct: 323  ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 158/410 (38%), Gaps = 50/410 (12%)

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           + S ++ V    T      AI S+     D  I  G I K+++    +      +G  P 
Sbjct: 6   ISSPQVAVNDIGTAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPS 65

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSL 672
            EL +    +P  +  VG  V+  +++      R+ LS      +    + ++L +    
Sbjct: 66  RELSIKHDVDPHEVVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEA 125

Query: 673 VSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731
           V G V  V    +++ +  +G+   ++        +E   V       G E + +++ LD
Sbjct: 126 VKGTVIEVVKGGLILDIGLRGFLPASL--------VEMRRVRDLQPYIGKEIEAKIIELD 177

Query: 732 NESSNLLLSAKYSLINSAQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790
              +N++LS +  L  +  ++ S+  H +    V  G V +I+  G FV  LG + G   
Sbjct: 178 KNRNNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVH 236

Query: 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLE 850
            S+         S+   VG  V   +LDV+ +  R++LSLK +        F + H    
Sbjct: 237 VSELSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLK-ATQEDPWRQFARTH---- 291

Query: 851 EKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA 910
                                  IG ++ GKV +   FG  V  +E   + G +   +LA
Sbjct: 292 ----------------------AIGQIVPGKVTKLVPFGAFVRVDE--GIEGLVHISELA 327

Query: 911 GATVE-------SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNR 953
              VE        G      ++D+    R + LSLK    D   E + ++
Sbjct: 328 ERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEFDPSK 377



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 148/354 (41%), Gaps = 31/354 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 36  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVSVGDEVEALVLTKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  + +   G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLILSKKRAQYERAWGTIEELKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++G+ ++ +I+      +++  SRR  L       R      ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 208 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVAVGDEVTVE 261

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  +Q     +  H    +V G V  ++  G FVR    +
Sbjct: 262 VLDVDLDRERVSLSLKATQEDPWRQF----ARTHAIGQIVPGKVTKLVPFGAFVRVDEGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
            G    S+  +       +   VG      ++D++ E  RI+LSLKQ+    T+
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTE 371



 Score = 40.8 bits (94), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 112/259 (43%), Gaps = 40/259 (15%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R + +     
Sbjct: 138  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----- 192

Query: 1245 TVDISNDNMQTFIHE---GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
                 ++    F+H+   G +  G +S I++   G  V +G  + G VH +EL    +  
Sbjct: 193  --QTQSEVRSEFLHQLQKGQVRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDH 247

Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
            P      G  V  +VL++         V LSL+++ +                P +   +
Sbjct: 248  PSEVVAVGDEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRQFAR 289

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
               +    IV G V  +   G F+ +   ++  V +S L++ +VE P++   +G     +
Sbjct: 290  THAI--GQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMVK 347

Query: 1422 VLSVEPLSKRVEVTLKTSD 1440
            V+ ++   +R+ ++LK ++
Sbjct: 348  VIDIDLERRRISLSLKQAN 366


>gi|383643400|ref|ZP_09955806.1| 30S ribosomal protein S1 [Streptomyces chartreusis NRRL 12338]
          Length = 498

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VAVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|297571464|ref|YP_003697238.1| RNA binding S1 domain-containing protein [Arcanobacterium
            haemolyticum DSM 20595]
 gi|296931811|gb|ADH92619.1| RNA binding S1 domain protein [Arcanobacterium haemolyticum DSM
            20595]
          Length = 489

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 139/276 (50%), Gaps = 31/276 (11%)

Query: 1257 IHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            I E D +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ K
Sbjct: 118  IKEADGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE----IEAK 171

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            ++E+ +      +V LS RS L+    T S   ST ++T          L    +  G +
Sbjct: 172  IIELDKNRN---NVVLSRRSWLE---QTQSEVRSTFLNT----------LQKGQVRDGVI 215

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
             ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV ++
Sbjct: 216  SSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGTPVTVEVLEVDMDRERVSLS 274

Query: 1436 LKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494
            LK +      +      +  H +  +V G++ ++  +G F+ +E+  + GL H+SEL++ 
Sbjct: 275  LKAT-----QEDPWQTFARTHAISQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELAQR 328

Query: 1495 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            HVD  E + + G+ V VK++ +D ++RRISL +K +
Sbjct: 329  HVDLPEQVVKVGDDVFVKVIDIDLDRRRISLSLKQA 364



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G + ++ +FGA V   GGV  L  +  +S   I  P +  +VG  +   VL 
Sbjct: 205 LQKGQVRDGVISSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGTPVTVEVLE 263

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T          ++A +    +  G +TK+   G FVR  +G++G  
Sbjct: 264 VDMDRERVSLSLKATQEDPWQTFARTHAISQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 320

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 321 HISELAQRHVDLPEQVVKVGDDVFVKVIDIDLDRRRISLSL 361



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 117/264 (44%), Gaps = 34/264 (12%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + +IGK +   ++ ++K +  + L  R +   +   
Sbjct: 137  LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRSW---LEQT 193

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
              ++ +  + T + +G +  G IS I++   G  V +G  + G VH +EL    +  P  
Sbjct: 194  QSEVRSTFLNT-LQKGQVRDGVISSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 249

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + G  V  +VLE+         V LSL+++ +                P +   +   
Sbjct: 250  VVEVGTPVTVEVLEVDMDRE---RVSLSLKATQE---------------DPWQTFARTHA 291

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +S   +V G V  +   G F+ +   ++  V +S L+  +V+ PE+   +G  V  +V+ 
Sbjct: 292  IS--QVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDLPEQVVKVGDDVFVKVID 349

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSE 1448
            ++   +R+ ++LK ++      SE
Sbjct: 350  IDLDRRRISLSLKQANEGVDPTSE 373


>gi|228907229|ref|ZP_04071090.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
 gi|228852450|gb|EEM97243.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
          Length = 382

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 178/383 (46%), Gaps = 53/383 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIIELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++            ++D+  K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-----------LELDSQKK--EAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKND 1535
            +L+V   ++RISL +K +  +N+
Sbjct: 328  VLEVHAAEKRISLSIKEALEENN 350



 Score = 40.8 bits (94), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 149/356 (41%), Gaps = 29/356 (8%)

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
             +++ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKIIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 663
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIIELDREKNRVILSHKAVVELELDSQKKEA 182

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 721
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 778
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           V  L  + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAL 346


>gi|341821259|emb|CCC57612.1| ribosomal protein S1 [Weissella thailandensis fsh4-2]
          Length = 405

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 140/272 (51%), Gaps = 33/272 (12%)

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
            DIV   +++ + G  GLVV +   + G V  + ++N  V D L+ Y +GQ ++ K++EI+
Sbjct: 114  DIVEAPVTQAVKG--GLVVDV-EGVRGFVPASMIENRFVQD-LNQY-KGQTIRAKIIEIN 168

Query: 1321 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1380
                    + LS R  L+   S   + +              ++LS   +++G V  +T+
Sbjct: 169  AA---DSRLILSRREVLNEERSAALARI-------------FDELSVGDVIEGKVARMTN 212

Query: 1381 KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             G FI L   +D  V +S +S   V  P     +G+ V  +VL ++P  +R+ +++K + 
Sbjct: 213  FGAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPERERISLSIKATQ 271

Query: 1441 S---RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1497
                 TA++           G ++ G +KRV  +G F+ +    + GL HVS++S  H+ 
Sbjct: 272  PGPWDTAAE-------KAPAGTVLEGTVKRVVDFGAFVEV-FPGVEGLVHVSQISHKHIA 323

Query: 1498 NIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            N   +  AG+KV+VK+L V+ E++R+SL +K+
Sbjct: 324  NPSDVLTAGDKVQVKVLDVNPERQRLSLSIKA 355



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1472
            G+ +  +++ +     R+ ++ +   ++ R+A+ + I     L VGD++ G++ R+ ++G
Sbjct: 157  GQTIRAKIIEINAADSRLILSRREVLNEERSAALARI--FDELSVGDVIEGKVARMTNFG 214

Query: 1473 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             FI +   +  GL HVSE+S + V     +   GE+VKVK+L +D E+ RISL +K++
Sbjct: 215  AFIDLGGVD--GLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPERERISLSIKAT 270



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G V++GKV  + +FGA +   GGV  L  +  +S   + +P     VG E+  +VLG+  
Sbjct: 200 GDVIEGKVARMTNFGAFIDL-GGVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDP 258

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
           + +RI+++ K T    +     + AE A    +  G + ++   G FV  + GV+G    
Sbjct: 259 ERERISLSIKAT----QPGPWDTAAEKAPAGTVLEGTVKRVVDFGAFVEVFPGVEGLVHV 314

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           S++       PS +   G  V+ +++   P  +R++LS 
Sbjct: 315 SQISHKHIANPSDVLTAGDKVQVKVLDVNPERQRLSLSI 353



 Score = 46.2 bits (108), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 27/352 (7%)

Query: 494 SDVKPGMVVKGKVIAVD-SFGAIVQFPG-GVKALCPLPHMS---EFEIVKPGKKFKVGAE 548
           ++VK G VVKG+V+A+D +   IV   G GV+ + PL  ++   + ++    K   V   
Sbjct: 16  AEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDADVNDLVKVGDVLDL 75

Query: 549 LVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
           +V   +G   +  +    K  ++++ A     ++ +   I    +T+  K G  V    G
Sbjct: 76  VVVSTIGSDKEGGSYLLSKRRLEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDV-EG 134

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSE--- 663
           V+GF P S +  +   +  + Y  GQ ++ +I+    A  R+ LS   ++   R +    
Sbjct: 135 VRGFVPASMIE-NRFVQDLNQYK-GQTIRAKIIEINAADSRLILSRREVLNEERSAALAR 192

Query: 664 -DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGY 722
             D + +G ++ G V  +T     + +   G   G +    ++   E  +    V+  G 
Sbjct: 193 IFDELSVGDVIEGKVARMTNFGAFIDL---GGVDGLVHVSEISH--ERVSQPSDVLSVGE 247

Query: 723 EFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFV 779
           E   ++L LD E   + LS     I + Q  P D  A      +V+ G V  +++ G FV
Sbjct: 248 EVKVKVLGLDPERERISLS-----IKATQPGPWDTAAEKAPAGTVLEGTVKRVVDFGAFV 302

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
                + G    S+      A+ S     G  V+  +LDVN E  R++LS+K
Sbjct: 303 EVFPGVEGLVHVSQISHKHIANPSDVLTAGDKVQVKVLDVNPERQRLSLSIK 354



 Score = 45.4 bits (106), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 30/230 (13%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHAT--VMKSVIKPGYEF 724
           VK+G +V G V  +  N  V+  I     +G IP   L    +     ++K         
Sbjct: 18  VKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDADVNDLVKVGDVLDLVV 77

Query: 725 DQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
              +  D E  + LLS +   + + +     AS    + +V   V   ++ G  V   G 
Sbjct: 78  VSTIGSDKEGGSYLLSKRR--LEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDVEG- 134

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + GF P S   +    DL++  Y GQ++R+ I+++N+   R+ LS ++            
Sbjct: 135 VRGFVPASMIENRFVQDLNQ--YKGQTIRAKIIEINAADSRLILSRRE------------ 180

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
              L EE+ A L          +  +   +G VIEGKV    +FG  +  
Sbjct: 181 --VLNEERSAALA---------RIFDELSVGDVIEGKVARMTNFGAFIDL 219



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 80/179 (44%), Gaps = 23/179 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD++ G+++++ +   G  + +G  + G VH +E+ +  VS P      G+ VK KVL +
Sbjct: 200  GDVIEGKVARMTNF--GAFIDLG-GVDGLVHVSEISHERVSQPSDVLSVGEEVKVKVLGL 256

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                     + LS++++                  PG      E      +++G VK V 
Sbjct: 257  DPERE---RISLSIKAT-----------------QPGPWDTAAEKAPAGTVLEGTVKRVV 296

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
              G F+ +   ++  V +S +S  ++ +P      G  V  +VL V P  +R+ +++K 
Sbjct: 297  DFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLTAGDKVQVKVLDVNPERQRLSLSIKA 355


>gi|453051391|gb|EME98899.1| 30S ribosomal protein S1 [Streptomyces mobaraensis NBRC 13819 = DSM
            40847]
          Length = 501

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 187/405 (46%), Gaps = 55/405 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VSVGDQVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDAD 1537
            E HV+  E + +  +++ VK++ +D E+RRISL +K +     AD
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGAD 375



 Score = 49.7 bits (117), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG ++   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDQVEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|302518440|ref|ZP_07270782.1| ribosomal protein S1 [Streptomyces sp. SPB78]
 gi|318056317|ref|ZP_07975040.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actG]
 gi|318076495|ref|ZP_07983827.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actF]
 gi|302427335|gb|EFK99150.1| ribosomal protein S1 [Streptomyces sp. SPB78]
          Length = 504

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|281413894|ref|ZP_06245636.1| 30S ribosomal protein S1 [Micrococcus luteus NCTC 2665]
          Length = 413

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 151/316 (47%), Gaps = 37/316 (11%)

Query: 1217 TGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGG 1276
            T   L + KE K  RL+L   +        DI     +    E  +V G + +++ G  G
Sbjct: 12   TVEALVLTKEDKEGRLILSKKRAQYERAWGDI-----EKIKEEDGVVEGTVIEVVKG--G 64

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            L++ IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R+ 
Sbjct: 65   LILDIGLRGFLPASLVEMRRVRDLAPYIG----QKLEAKIIELDKNRN---NVVLSRRAW 117

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
            L+   S   S+              +  L    +  G V ++ + G F+ L   +D  V 
Sbjct: 118  LEQTQSEVRSNF-------------LHKLEKGQVRNGTVSSIVNFGAFVDLG-GVDGLVH 163

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL-SNL 1455
            +S LS  +++ P +   +G+ V   VL V+   +RV ++LK      A+Q +   L +  
Sbjct: 164  VSELSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLK------ATQEDPWQLFART 217

Query: 1456 H-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
            H +G +V G++ ++  +G F+ +E+  + GL H+SEL+  H+D  E +    +++ VK++
Sbjct: 218  HALGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISELASRHIDTAEQVVSVNDELFVKVI 276

Query: 1515 KVDKEKRRISLGMKSS 1530
             +D E+RRISL +K +
Sbjct: 277  DIDLERRRISLSLKQA 292



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 3/164 (1%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+ 
Sbjct: 129 FLHK-LEKGQVRNGTVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 186

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
             VL V   R  V+      +     L +   A  +++  G +TK+   G FVR  +G++
Sbjct: 187 VEVLEVDMDRERVSLSLKATQEDPWQLFARTHALGQVVP-GKVTKLVPFGAFVRVEDGIE 245

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           G    SEL          +  V   +  +++      RRI+LS 
Sbjct: 246 GLVHISELASRHIDTAEQVVSVNDELFVKVIDIDLERRRISLSL 289



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 135/328 (41%), Gaps = 50/328 (15%)

Query: 624 CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVV 680
            +P  +  VG  V+  +++      R+ LS        +  D+ K+     +V G V  V
Sbjct: 1   MDPDEVVAVGDTVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKEEDGVVEGTVIEV 60

Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLL 739
               +++ +  +G+    +P    A  +E   V       G + + +++ LD   +N++L
Sbjct: 61  VKGGLILDIGLRGF----LP----ASLVEMRRVRDLAPYIGQKLEAKIIELDKNRNNVVL 112

Query: 740 SAKYSLINSAQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
           S +  L  +  ++ S+  H +    V +G V +I+  G FV  LG + G    S+     
Sbjct: 113 SRRAWLEQTQSEVRSNFLHKLEKGQVRNGTVSSIVNFGAFVD-LGGVDGLVHVSELSWKH 171

Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS 858
               S+   VGQ V   +L+V+ +  R++LSLK +                +E    L +
Sbjct: 172 IDHPSEVVEVGQEVTVEVLEVDMDRERVSLSLKAT----------------QEDPWQLFA 215

Query: 859 SKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGS 918
             H            +G V+ GKV +   FG  V  E+   + G +   +LA   +++  
Sbjct: 216 RTH-----------ALGQVVPGKVTKLVPFGAFVRVED--GIEGLVHISELASRHIDTAE 262

Query: 919 VIQAA-------ILDVAKAERLVDLSLK 939
            + +        ++D+    R + LSLK
Sbjct: 263 QVVSVNDELFVKVIDIDLERRRISLSLK 290


>gi|229029277|ref|ZP_04185367.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
 gi|228732025|gb|EEL82917.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
          Length = 382

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 172/383 (44%), Gaps = 53/383 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R           
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDREKNRVI----- 164

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
                   +S     +L  D     K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 165  -------LSHKAVVELELD----SKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              L  GDI  G +KR+ ++G F+ +    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GELKAGDIREGVVKRLVTFGAFVEV-LPGVEGLVHVSQIANRHVKNPSEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKND 1535
            +L+V   ++RISL +K +  +N+
Sbjct: 328  VLEVHVAEKRISLSIKEALEENN 350



 Score = 55.8 bits (133), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          ++   +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVAGELKAGD--IREGVVKRLVTFGAFVEVLPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++       PS +  +GQ VK +++    A +RI+LS 
Sbjct: 300 LVHVSQIANRHVKNPSEVLEMGQEVKVKVLEVHVAEKRISLSI 342


>gi|227548120|ref|ZP_03978169.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079782|gb|EEI17745.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM 44291]
          Length = 489

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 188/399 (47%), Gaps = 57/399 (14%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL----FIL 1194
            + +++IGS   F    D +I     G  VTG V KVD++  LL I    +  +      +
Sbjct: 9    VAINDIGSAEDFLAAVDATIKYFNDGDIVTGTVVKVDHDEVLLDIGYKTEGVIPTRELSI 68

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVL--RPFQDGISDKTVDISNDN 1252
                +P E+ E      +G  V   VL+  KE K  RL+L  +  Q   +  T++   +N
Sbjct: 69   KHDIDPDEVVE------VGDEVDALVLT--KEDKEGRLILSKKRAQYERAWGTIEELQNN 120

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
             Q        V G + +++ G  GL++ IG   +      E++ +   DP  G    Q +
Sbjct: 121  DQP-------VTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLDPYIG----QEL 167

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            + K++E+ +      +V LS R+ L+   S   SD              +  L    + +
Sbjct: 168  EAKIIELDKHRN---NVVLSRRAYLEETQSAVRSDF-------------LHQLQKGQVRK 211

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +RV
Sbjct: 212  GVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERV 270

Query: 1433 EVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
             ++LK +      +      +  H VG IV G++ ++  +G F+ ++   + GL H+SEL
Sbjct: 271  SLSLKAT-----QEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVQE-GIEGLVHISEL 324

Query: 1492 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            ++ HV+  + +   GE+V VK++ +D E+RRISL +K +
Sbjct: 325  AQRHVEVPDQVVGVGEEVMVKVIDIDLERRRISLSLKQA 363



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H  ++ G V KG V ++ +FGA V   GGV  L  +  +S   I  P +   VG E+ 
Sbjct: 200 FLHQ-LQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVTVGDEVT 257

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T          ++A      I  G +TK+   G FVR   G
Sbjct: 258 VEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQ---IVPGKVTKLVPFGAFVRVQEG 314

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  +  VG+ V  +++      RRI+LS 
Sbjct: 315 IEGLVHISELAQRHVEVPDQVVGVGEEVMVKVIDIDLERRRISLSL 360



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 165/402 (41%), Gaps = 58/402 (14%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G V+ VD    ++      + + P   +S    + P +  +VG E+   VL  + 
Sbjct: 34  GDIVTGTVVKVDHDEVLLDIGYKTEGVIPTRELSIKHDIDPDEVVEVGDEVDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +  D+ +T G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEEL-QNNDQPVT-GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 EL------GLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSED 664
            +       LDP        ++GQ ++ +I+      +++  SRR  L       R    
Sbjct: 150 LVEMRRVRDLDP--------YIGQELEAKIIELDKHRNNVVLSRRAYLEETQSAVRSDFL 201

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
             ++ G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E
Sbjct: 202 HQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVTVGDE 255

Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVR 780
              ++L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR
Sbjct: 256 VTVEVLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVR 310

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
               + G    S+          +   VG+ V   ++D++ E  RI+LSLKQ+     D 
Sbjct: 311 VQEGIEGLVHISELAQRHVEVPDQVVGVGEEVMVKVIDIDLERRRISLSLKQA-----DE 365

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
            + +E      +  M  S    G+ +          +W+EGF
Sbjct: 366 DYAEE--FDPSRYGMADSYDEQGNYIFPEGFDPETNEWMEGF 405


>gi|297195006|ref|ZP_06912404.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721927|gb|EDY65835.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 500

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|42780699|ref|NP_977946.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
 gi|3122814|sp|O06000.1|RS1H_BACC1 RecName: Full=30S ribosomal protein S1 homolog
 gi|2094771|emb|CAA70584.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
 gi|42736619|gb|AAS40554.1| ribosomal protein S1 [Bacillus cereus ATCC 10987]
          Length = 382

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQILELKIIKLEENDLVLSKRAVDAEKAWIELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NIA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEVKAGDIREGIVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K ++ +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEAFEENNVTEDYSQYEPNADSA 365



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          ++   +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENIAGEVKAGD--IREGIVKRLVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS     +   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAFEENNVTED 354


>gi|294628772|ref|ZP_06707332.1| ribosomal protein S1 [Streptomyces sp. e14]
 gi|292832105|gb|EFF90454.1| ribosomal protein S1 [Streptomyces sp. e14]
          Length = 496

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VAVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|260578011|ref|ZP_05845934.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
 gi|258603838|gb|EEW17092.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
          Length = 488

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 171/372 (45%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVE------VGDEIDAL 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++      + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEELKKNEEPVTGTVIEVVKG--GLIL 138

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG----QEIEAKIIELDKHRN---NVVLSRRAWLEQ 191

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 192  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSQ 237

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H +G
Sbjct: 238  LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAIG 292

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+   VK++ +D 
Sbjct: 293  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDIDL 351

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 352  ERRRISLSLKQA 363



 Score = 50.4 bits (119), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +  + +   G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEELKKNEEPVT--GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSQLSWKHIDHPS---EVVAVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+  +       +   VGQ     ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W+EG+
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGY 405


>gi|52143850|ref|YP_082978.1| 30S ribosomal protein S1 [Bacillus cereus E33L]
 gi|51977319|gb|AAU18869.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus cereus
            E33L]
          Length = 382

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NIG 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENIGGEIKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354


>gi|408829074|ref|ZP_11213964.1| 30S ribosomal protein S1 [Streptomyces somaliensis DSM 40738]
          Length = 499

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|423392104|ref|ZP_17369330.1| ribosomal protein S1 [Bacillus cereus BAG1X1-3]
 gi|401637937|gb|EJS55690.1| ribosomal protein S1 [Bacillus cereus BAG1X1-3]
          Length = 382

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEENDLVLSKRAVDAEKAWVELQEKFNSGYVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFADY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365


>gi|117928296|ref|YP_872847.1| 30S ribosomal protein S1 [Acidothermus cellulolyticus 11B]
 gi|117648759|gb|ABK52861.1| SSU ribosomal protein S1P [Acidothermus cellulolyticus 11B]
          Length = 515

 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 184/401 (45%), Gaps = 57/401 (14%)

Query: 1143 SMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLF 1192
            S + V+++GS   F    D +I     G  V G V KVD +  LL I       + ++  
Sbjct: 18   SRIAVNDVGSTDDFIAAIDKTIKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSREL 77

Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
             +    +P E+ +   R           L + KE K  RL+L   +         I    
Sbjct: 78   SIKHDVDPHEVVKVGDRIE--------ALVLQKEDKDGRLILSKKRAQYERAWGTIEQ-- 127

Query: 1253 MQTFIHEGD-IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
                I E D +V G + +++ G  GL++ IG   +      E++ +    P  G    + 
Sbjct: 128  ----IKEADGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYVG----RK 177

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI 1370
            ++ K++E+ +      +V LS R+ L+   S    + L+T              L    I
Sbjct: 178  LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRQTFLTT--------------LKKGQI 220

Query: 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSK 1430
              G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +
Sbjct: 221  RNGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGMPVTVEVLDVDLDRE 279

Query: 1431 RVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
            RV ++LK++      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+S
Sbjct: 280  RVSLSLKST-----QEDPWQLFARTHSLGQVVPGKVTKLVPFGAFVRVED-GIEGLVHIS 333

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            ELS+ HV+  E + + G+++ VKI+ +D E+RRISL +K +
Sbjct: 334  ELSDRHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQA 374



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 148/347 (42%), Gaps = 27/347 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V P +  KVG  +   VL  + 
Sbjct: 45  GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDRIEALVLQKED 104

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    EA D ++T G + ++ K G  +    G++GF P S
Sbjct: 105 KDGRLILSKKRAQYERAWGTIEQIKEA-DGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 160

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+       P    +VG+ ++ +I+      +++  SRR  L       R +    +K
Sbjct: 161 LVEMRRVRDLAP----YVGRKLEAKIIELDKNRNNVVLSRRAYLEQTQSEVRQTFLTTLK 216

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G + +GVV  +      V +   G   G +    L+  H++H + +  V  P     ++
Sbjct: 217 KGQIRNGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGMPVTV--EV 271

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
           L +D +   + LS K +  +  Q      S      VV G V  ++  G FVR    + G
Sbjct: 272 LDVDLDRERVSLSLKSTQEDPWQLFARTHSL---GQVVPGKVTKLVPFGAFVRVEDGIEG 328

Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
               S+  D       +   VG  +   I+D++ E  RI+LSLKQ+ 
Sbjct: 329 LVHISELSDRHVEIPEQVVQVGDEIFVKIIDIDLERRRISLSLKQAL 375



 Score = 44.3 bits (103), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 12/143 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G VV GKV  +  FGA V+   G++ L  +  +S+  +  P +  +VG E+  +++ +  
Sbjct: 303 GQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELSDRHVEIPEQVVQVGDEIFVKIIDIDL 362

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           + +RI+++ K+ L      + S+  E  D  + +G     ++HG ++      +GF P +
Sbjct: 363 ERRRISLSLKQAL----EGVESTSPEQFDPTV-YGMPASYDEHGNYIY----PEGFDPET 413

Query: 617 ELGLDPGCEPSSMYHVGQVVKCR 639
              L PG E        Q  + R
Sbjct: 414 NQWL-PGHEAQQAEWERQYAEAR 435


>gi|408677342|ref|YP_006877169.1| SSU ribosomal protein S1p [Streptomyces venezuelae ATCC 10712]
 gi|328881671|emb|CCA54910.1| SSU ribosomal protein S1p [Streptomyces venezuelae ATCC 10712]
          Length = 503

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 41   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 94

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 95   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 145

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 146  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 198

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 199  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 243

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 244  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 298

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 299  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 357

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 358  LERRRISLSLKQA 370



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 41  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 100

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 101 KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 156

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 157 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 212

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 213 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 266

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 267 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 323

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 324 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 373


>gi|344999023|ref|YP_004801877.1| RNA binding S1 domain-containing protein [Streptomyces sp. SirexAA-E]
 gi|344314649|gb|AEN09337.1| RNA binding S1 domain protein [Streptomyces sp. SirexAA-E]
          Length = 504

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 45.1 bits (105), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 127/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQI--GQVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQAN 369


>gi|148272934|ref|YP_001222495.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
 gi|170782356|ref|YP_001710689.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
            sepedonicus]
 gi|147830864|emb|CAN01808.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
 gi|169156925|emb|CAQ02093.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
            sepedonicus]
          Length = 484

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 170/373 (45%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  + G V K+D +  L+ +       + ++   +    +P+E+        +G  V   
Sbjct: 38   GDLIEGTVVKIDRDEVLIDVGYKTEGVIPSRELSIKHDVDPTEV------VKVGDTVEAL 91

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGD-IVGGRISKILSGVGGLV 1278
            VL   KE K  RL+L   +        D+        I E D +V G + +++ G  GL+
Sbjct: 92   VL--QKEDKEGRLILSKKRAQYERAWGDVEK------IKESDGVVTGTVIEVVKG--GLI 141

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V IG   +      EL+ +    P  G    Q ++ K+LE+ +      +V LS R+ L+
Sbjct: 142  VDIGLRGFLPASLIELRRVRDLTPYLG----QEIEAKILELDKNRN---NVVLSRRALLE 194

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
               S + S               + +L    + +G V ++ + G F+ L   +D  V +S
Sbjct: 195  QTQSESRSTF-------------LNNLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVS 240

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  ++E   +   +G+ V   +L V+   +RV ++LK +      +      +  H +
Sbjct: 241  ELSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKAT-----QEDPWQVFARTHAI 295

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +  G++ ++  +G F+ +    + GL H+SELS  HV+  E +   G++V VK++ +D
Sbjct: 296  GQVAPGKVTKLVPFGAFVRVAE-GIEGLVHISELSGKHVELAEQVVSVGDEVFVKVIDID 354

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 355  LERRRISLSLKQA 367



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 157/349 (44%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +++G V+ +D    ++      + + P   +S    V P +  KVG  +   VL  + 
Sbjct: 38  GDLIEGTVVKIDRDEVLIDVGYKTEGVIPSRELSIKHDVDPTEVVKVGDTVEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E +D ++T G + ++ K G  V    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGDVEKIKE-SDGVVT-GTVIEVVKGGLIVDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             EL       P    ++GQ ++ +I+      +++  SRR  L      +R +  + ++
Sbjct: 154 LIELRRVRDLTP----YLGQEIEAKILELDKNRNNVVLSRRALLEQTQSESRSTFLNNLQ 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H+EHA+    V++ G E   +
Sbjct: 210 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIEHAS---EVVEVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K +  +  Q      +  H    V  G V  ++  G FVR    +
Sbjct: 264 ILEVDLDRERVSLSLKATQEDPWQVF----ARTHAIGQVAPGKVTKLVPFGAFVRVAEGI 319

Query: 786 TGFAPRSKAVDGQRADLS-KTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+ + G+  +L+ +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 320 EGLVHISE-LSGKHVELAEQVVSVGDEVFVKVIDIDLERRRISLSLKQA 367



 Score = 48.1 bits (113), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           ++++ G V KG V ++ +FGA V   GGV  L  +  +S   I    +  +VG E+   +
Sbjct: 206 NNLQKGQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEI 264

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +R++++ K T          ++A      +  G +TK+   G FVR   G++G
Sbjct: 265 LEVDLDRERVSLSLKATQEDPWQVFARTHAIGQ---VAPGKVTKLVPFGAFVRVAEGIEG 321

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SEL          +  VG  V  +++      RRI+LS 
Sbjct: 322 LVHISELSGKHVELAEQVVSVGDEVFVKVIDIDLERRRISLSL 364


>gi|29832775|ref|NP_827409.1| 30S ribosomal protein S1 [Streptomyces avermitilis MA-4680]
 gi|29609895|dbj|BAC73944.1| putative ribosomal protein S1 [Streptomyces avermitilis MA-4680]
          Length = 501

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 45.1 bits (105), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 127/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQIG--QVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQAN 369


>gi|441159123|ref|ZP_20967490.1| 30S ribosomal protein S1 [Streptomyces rimosus subsp. rimosus ATCC
            10970]
 gi|440617222|gb|ELQ80332.1| 30S ribosomal protein S1 [Streptomyces rimosus subsp. rimosus ATCC
            10970]
          Length = 503

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-GIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|218133764|ref|ZP_03462568.1| hypothetical protein BACPEC_01633 [[Bacteroides] pectinophilus ATCC
            43243]
 gi|217991139|gb|EEC57145.1| putative ribosomal protein S1 [[Bacteroides] pectinophilus ATCC
            43243]
          Length = 365

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 186/391 (47%), Gaps = 70/391 (17%)

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT--VDISNDNMQTFIHEG 1260
            L+E  +  H G+ V G V+S+ +++ +L +  +   DGI  ++   +  N +++T + EG
Sbjct: 10   LEESFKTIHTGEVVDGTVISVKEDEIVLNIGYKA--DGIITRSEYTNKPNVDLRTVVSEG 67

Query: 1261 DIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320
            D +  ++ K+  G G +++      Y R+   E  N  + +    Y+  + +  KV    
Sbjct: 68   DTMKAKVLKVNDGDGQVLLT-----YRRL-VAEEGNKKLEE---AYNNKEVITAKV---D 115

Query: 1321 RTVRGTFHVELS-----LRSSLDGMSSTNSSDLS-----------TDVDTP--------- 1355
            + + G   V +      + +SL  +S T   DL+           T+ +           
Sbjct: 116  KAIPGGLSVVIDEARVFIPASL--ISDTYEKDLTKFEGQEVSFVITEYNPKKRRIIGDCK 173

Query: 1356 ----GKHLEKIEDLSPNM----IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1407
                 K  E+ E L  ++     ++G VKNVT  G FI L   +D  + +S +S G  E+
Sbjct: 174  QLILAKKAEQAEKLLASIKEGDTIEGTVKNVTDFGAFIDLG-GVDGLLHISEMSWGRTEN 232

Query: 1408 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1467
            P+K F +G  V   V  +     ++ ++LK  D    + +         VG++V G++ R
Sbjct: 233  PKKVFKVGDSVKAFVKEIN--GSKIALSLKYPDQNPWTDAP----EKYAVGNVVKGKVAR 286

Query: 1468 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
            +  +G F+ +E T +  L HVS+++ +HVD    + + G++++ K++ ++ E+++ISL +
Sbjct: 287  MTDFGAFVELE-TGVDALLHVSQIALEHVDKPSDVLKIGQEIEAKVVDLNVEEKKISLSI 345

Query: 1528 KSSYFKNDADNLQMSSEEESDEAIEEVGSYN 1558
            K +  K++A          SDEA EEV   N
Sbjct: 346  K-ALLKDNA----------SDEAAEEVSEEN 365



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 143/341 (41%), Gaps = 23/341 (6%)

Query: 322 GMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381
           G +V   V S+ E+ ++L+      G +      N  P  + +   ++   + A++L V+
Sbjct: 20  GEVVDGTVISVKEDEIVLNIGYKADGIITRSEYTNK-PNVDLRTVVSEGDTMKAKVLKVN 78

Query: 382 PTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVV--RVDRGL--GLLLDIPSTPVSTP 437
                V LT    +    A   + K+ + Y+  +V+  +VD+ +  GL + I    V  P
Sbjct: 79  DGDGQVLLTYRRLV----AEEGNKKLEEAYNNKEVITAKVDKAIPGGLSVVIDEARVFIP 134

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF----RHLEGLATGILKASAFEGLVFTH 493
           A + ISD  E+++ K E     G  V   I  +    R + G    ++ A   E      
Sbjct: 135 ASL-ISDTYEKDLTKFE-----GQEVSFVITEYNPKKRRIIGDCKQLILAKKAEQAEKLL 188

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           + +K G  ++G V  V  FGA +   GGV  L  +  MS      P K FKVG  +   V
Sbjct: 189 ASIKEGDTIEGTVKNVTDFGAFIDL-GGVDGLLHISEMSWGRTENPKKVFKVGDSVKAFV 247

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
             +   +I ++ K             YA      +  G + ++   G FV    GV    
Sbjct: 248 KEINGSKIALSLKYPDQNPWTDAPEKYAVGN---VVKGKVARMTDFGAFVELETGVDALL 304

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S++ L+   +PS +  +GQ ++ +++      ++I+LS 
Sbjct: 305 HVSQIALEHVDKPSDVLKIGQEIEAKVVDLNVEEKKISLSI 345



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGV 556
           G VVKGKV  +  FGA V+   GV AL  +  ++   + KP    K+G E+  +V  L V
Sbjct: 277 GNVVKGKVARMTDFGAFVELETGVDALLHVSQIALEHVDKPSDVLKIGQEIEAKVVDLNV 336

Query: 557 KSKRITVTHKKTL 569
           + K+I+++ K  L
Sbjct: 337 EEKKISLSIKALL 349


>gi|300117474|ref|ZP_07055264.1| 30S ribosomal protein S1 [Bacillus cereus SJ1]
 gi|298725309|gb|EFI65961.1| 30S ribosomal protein S1 [Bacillus cereus SJ1]
          Length = 382

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NIG 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEVKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENIGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354


>gi|72161595|ref|YP_289252.1| 30S ribosomal protein S1 [Thermobifida fusca YX]
 gi|71915327|gb|AAZ55229.1| SSU ribosomal protein S1P [Thermobifida fusca YX]
          Length = 485

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 187/399 (46%), Gaps = 57/399 (14%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 13   VAVNDIGSEEAFLAAIDETIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 72

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHV--LSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
                +P E+           AV  HV  L + KE K  RL+L   +        + +   
Sbjct: 73   KHDVDPHEV----------VAVGDHVEALVLQKEDKEGRLILSKKR-----AQYERAWGT 117

Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
            ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    +
Sbjct: 118  IEKIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----L 171

Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
            + K++E+ +      +V LS R+ L+    T S    T ++T          L    I +
Sbjct: 172  EAKIIELDKNRN---NVVLSRRAWLE---QTQSEVRQTFLNT----------LQKGQIRK 215

Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
            G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV
Sbjct: 216  GVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERV 274

Query: 1433 EVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL 1491
             ++LK +      Q      +  H +G IV G++ ++  +G F+ +E   + GL H+SEL
Sbjct: 275  SLSLKATQEDPWQQ-----FARTHQIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISEL 328

Query: 1492 SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +E HV+  E + + G ++ VKI+ +D ++RRISL +K +
Sbjct: 329  AERHVEVPEQVVQVGTEIFVKIIDIDLDRRRISLSLKQA 367



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 38  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVAVGDHVEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 154 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQ 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + LS K +  +  QQ    A       +V G V  ++  G FVR    + 
Sbjct: 264 VLDVDMERERVSLSLKATQEDPWQQF---ARTHQIGQIVPGKVTKLVPFGAFVRVEEGIE 320

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   VG  +   I+D++ +  RI+LSLKQ+  S
Sbjct: 321 GLVHISELAERHVEVPEQVVQVGTEIFVKIIDIDLDRRRISLSLKQANES 370


>gi|365860826|ref|ZP_09400618.1| 30S ribosomal protein S1 [Streptomyces sp. W007]
 gi|364009736|gb|EHM30684.1| 30S ribosomal protein S1 [Streptomyces sp. W007]
          Length = 506

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371



 Score = 45.1 bits (105), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 127/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQI--GQVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQAN 369


>gi|357414015|ref|YP_004925751.1| RNA binding S1 domain-containing protein [Streptomyces flavogriseus
            ATCC 33331]
 gi|320011384|gb|ADW06234.1| RNA binding S1 domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 503

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 45.1 bits (105), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 127/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQI--GQVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQAN 369


>gi|408532678|emb|CCK30852.1| 30S ribosomal protein S1 [Streptomyces davawensis JCM 4913]
          Length = 498

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VAVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|161986623|ref|YP_250600.2| 30S ribosomal protein S1 [Corynebacterium jeikeium K411]
          Length = 488

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 171/372 (45%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 34   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVE------VGDEIDAL 87

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++      + V G + +++ G  GL++
Sbjct: 88   VLT--KEDKEGRLILSKKR-----AQYERAWGTIEELKKNEEPVTGTVIEVVKG--GLIL 138

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 139  DIGLRGFLPASLVEMRRVRDLQPYIG----QEIEAKIIELDKHRN---NVVLSRRAWLEQ 191

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 192  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSQ 237

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H +G
Sbjct: 238  LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAIG 292

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+   VK++ +D 
Sbjct: 293  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDIDL 351

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 352  ERRRISLSLKQA 363



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 34  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVLTKED 93

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +  + +   G + ++ K G  +    G++GF P S
Sbjct: 94  KEGRLILSKKRAQYERAWGTIEELKKNEEPVT--GTVIEVVKGGLILDI--GLRGFLPAS 149

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 150 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 205

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 206 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSQLSWKHIDHPS---EVVAVGDEVTVE 259

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 260 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 314

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+  +       +   VGQ     ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 315 IEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDIDLERRRISLSLKQA-----DEDYTE 369

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W+EG+
Sbjct: 370 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGY 405


>gi|254384227|ref|ZP_04999571.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1]
 gi|194343116|gb|EDX24082.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1]
          Length = 503

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|291450767|ref|ZP_06590157.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
 gi|359144624|ref|ZP_09178558.1| 30S ribosomal protein S1 [Streptomyces sp. S4]
 gi|421738888|ref|ZP_16177225.1| ribosomal protein S1 [Streptomyces sp. SM8]
 gi|291353716|gb|EFE80618.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
 gi|406692679|gb|EKC96363.1| ribosomal protein S1 [Streptomyces sp. SM8]
          Length = 504

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 45.1 bits (105), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 127/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQIG--QVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQAN 369


>gi|456389923|gb|EMF55318.1| rpsA protein [Streptomyces bottropensis ATCC 25435]
          Length = 498

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371



 Score = 45.8 bits (107), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 128/290 (44%), Gaps = 37/290 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQI--GQVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++    S
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGS 374


>gi|443628333|ref|ZP_21112687.1| putative 30S ribosomal protein S1 [Streptomyces viridochromogenes
            Tue57]
 gi|443338157|gb|ELS52445.1| putative 30S ribosomal protein S1 [Streptomyces viridochromogenes
            Tue57]
          Length = 498

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VAVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|290961257|ref|YP_003492439.1| 30S ribosomal protein S1 [Streptomyces scabiei 87.22]
 gi|260650783|emb|CBG73900.1| 30S ribosomal protein S1 [Streptomyces scabiei 87.22]
          Length = 498

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371



 Score = 45.8 bits (107), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 128/290 (44%), Gaps = 37/290 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQI--GQVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++    S
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGS 374


>gi|206970547|ref|ZP_03231499.1| ribosomal protein S1 [Bacillus cereus AH1134]
 gi|206734183|gb|EDZ51353.1| ribosomal protein S1 [Bacillus cereus AH1134]
          Length = 382

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 176/398 (44%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGCVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R           
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDREKNRVI----- 164

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
                   +S     +L  D     K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 165  -------LSHKAVVELELD----SKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365


>gi|386839556|ref|YP_006244614.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus subsp.
            jinggangensis 5008]
 gi|374099857|gb|AEY88741.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus subsp.
            jinggangensis 5008]
 gi|451792849|gb|AGF62898.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus subsp.
            jinggangensis TL01]
          Length = 496

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VAVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|68263494|emb|CAI36982.1| 30S ribosomal protein S1 [Corynebacterium jeikeium K411]
          Length = 516

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 171/372 (45%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G V KVD++  LL I       + ++   +    +P E+ E      +G  +   
Sbjct: 62   GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVE------VGDEIDAL 115

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL+  KE K  RL+L   +        + +   ++      + V G + +++ G  GL++
Sbjct: 116  VLT--KEDKEGRLILSKKR-----AQYERAWGTIEELKKNEEPVTGTVIEVVKG--GLIL 166

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R+ L+ 
Sbjct: 167  DIGLRGFLPASLVEMRRVRDLQPYIG----QEIEAKIIELDKHRN---NVVLSRRAWLEQ 219

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L    + +G V ++ + G F+ L   +D  V +S 
Sbjct: 220  TQSEVRSEF-------------LHQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSQ 265

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G  V   VL V+   +RV ++LK +      +      +  H +G
Sbjct: 266  LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRVFARTHAIG 320

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+   VK++ +D 
Sbjct: 321  QIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDIDL 379

Query: 1519 EKRRISLGMKSS 1530
            E+RRISL +K +
Sbjct: 380  ERRRISLSLKQA 391



 Score = 50.1 bits (118), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 165/398 (41%), Gaps = 50/398 (12%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + + P   +S    V PG+  +VG E+   VL  + 
Sbjct: 62  GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGDEIDALVLTKED 121

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    +  + +   G + ++ K G  +    G++GF P S
Sbjct: 122 KEGRLILSKKRAQYERAWGTIEELKKNEEPVT--GTVIEVVKGGLILDI--GLRGFLPAS 177

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    ++GQ ++ +I+      +++  SRR  L       R      ++
Sbjct: 178 LVEMRRVRDLQP----YIGQEIEAKIIELDKHRNNVVLSRRAWLEQTQSEVRSEFLHQLQ 233

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V+  G E   +
Sbjct: 234 KGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSQLSWKHIDHPS---EVVAVGDEVTVE 287

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGR 784
           +L +D +   + LS K     + Q+ P    +  H    +V G V  ++  G FVR    
Sbjct: 288 VLDVDLDRERVSLSLK-----ATQEDPWRVFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 342

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    S+  +       +   VGQ     ++D++ E  RI+LSLKQ+     D  + +
Sbjct: 343 IEGLVHISELAERHVEVPDQVVGVGQDAMVKVIDIDLERRRISLSLKQA-----DEDYTE 397

Query: 845 EHFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
           E      K  M  S    G+ +          +W+EG+
Sbjct: 398 E--FDPSKYGMADSYDEQGNYIFPEGFDPETNEWLEGY 433


>gi|418474377|ref|ZP_13043878.1| 30S ribosomal protein S1 [Streptomyces coelicoflavus ZG0656]
 gi|371545016|gb|EHN73675.1| 30S ribosomal protein S1 [Streptomyces coelicoflavus ZG0656]
          Length = 504

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ + +  + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|229016854|ref|ZP_04173782.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
 gi|229023060|ref|ZP_04179574.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
 gi|423420453|ref|ZP_17397542.1| ribosomal protein S1 [Bacillus cereus BAG3X2-1]
 gi|228738206|gb|EEL88688.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
 gi|228744415|gb|EEL94489.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
 gi|401102362|gb|EJQ10349.1| ribosomal protein S1 [Bacillus cereus BAG3X2-1]
          Length = 382

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFNSGYVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFADY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKETLEENNVTEDYSQYEPNADSA 365


>gi|196039027|ref|ZP_03106334.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
 gi|196030172|gb|EDX68772.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
          Length = 382

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGETLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVG 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEVKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 56.6 bits (135), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354


>gi|345849206|ref|ZP_08802220.1| 30S ribosomal protein S1 [Streptomyces zinciresistens K42]
 gi|345639266|gb|EGX60759.1| 30S ribosomal protein S1 [Streptomyces zinciresistens K42]
          Length = 498

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VAVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 45.4 bits (106), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 127/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQIG--QVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQAN 369


>gi|417643269|ref|ZP_12293329.1| 30S ribosomal protein S1 [Staphylococcus warneri VCU121]
 gi|445059617|ref|YP_007385021.1| 30S ribosomal protein S1 [Staphylococcus warneri SG1]
 gi|330686048|gb|EGG97671.1| 30S ribosomal protein S1 [Staphylococcus epidermidis VCU121]
 gi|443425674|gb|AGC90577.1| 30S ribosomal protein S1 [Staphylococcus warneri SG1]
          Length = 392

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 146/305 (47%), Gaps = 44/305 (14%)

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            S D +Q  +   +++  ++++++ G  GLVV +G    G V  + +    + D  S + E
Sbjct: 97   SYDYLQEKLDNNEVIEAKVTEVVKG--GLVVDVGQR--GFVPASLISTDFIED-FSDF-E 150

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
            GQ +K KV E+         V LS ++     +    + L             ++ L+  
Sbjct: 151  GQTIKIKVEELDPE---NNRVILSRKAVEQAENEVKKASL-------------LDSLNAG 194

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             +++G V  +T+ G F+ +   +D  V +S LS  +V+SPE+   +G  V  +V SVE  
Sbjct: 195  DVIEGTVARLTNFGAFVDIG-GVDGLVHVSELSHQHVQSPEEVVSVGDKVNVKVKSVEKD 253

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
            ++R+ +++K  D+     ++I      H  D++ G + R+ ++G F+ I    + GL H+
Sbjct: 254  TERISLSIK--DTLPTPFAQIK--GQFHENDVIEGTVVRLANFGAFVEIA-PGVQGLVHI 308

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS----------------SYF 1532
            SE+   H+     +   G++V VKIL +D+E  R+SL +K+                SY 
Sbjct: 309  SEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDVVESDASTTQSYL 368

Query: 1533 KNDAD 1537
             ND D
Sbjct: 369  NNDTD 373



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 26/261 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           ++KV  V +G GL++D+      P++ +ST      SD   + ++ K+E+   E + V  
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDFEGQTIKIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E     + KAS  + L         G V++G V  + +FGA V   GGV  L
Sbjct: 169 -ILSRKAVEQAENEVKKASLLDSL-------NAGDVIEGTVARLTNFGAFVDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   VG ++  +V  V+  ++RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHQHVQSPEEVVSVGDKVNVKVKSVEKDTERISLSIKDTLPTPFAQIKGQFHEN 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV    GVQG    SE+       P  +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGI 336

Query: 644 IPASRRINLSFMMKPTRVSED 664
              + R++LS  +K T  +ED
Sbjct: 337 DEENERVSLS--IKATLPNED 355



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 152/372 (40%), Gaps = 32/372 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I KP +  K G E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKYNGIIPISQLSTHHIEKPNEVVKEGDEIEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      +    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDSGAYILSKRQLETEQSYDYLQEKLDNNEVIEAKVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED---- 664
            +GF P S +  D   E  S +  GQ +K ++    P + R+ LS   K    +E+    
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQTIKIKVEELDPENNRVILS--RKAVEQAENEVKK 184

Query: 665 ----DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
               D +  G ++ G V  +T     V +   G   G +    L+   +H    + V+  
Sbjct: 185 ASLLDSLNAGDVIEGTVARLTNFGAFVDI---GGVDGLVHVSELSH--QHVQSPEEVVSV 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G + + ++  ++ ++  + LS K +L     Q+       H N V+ G V  +   G FV
Sbjct: 240 GDKVNVKVKSVEKDTERISLSIKDTLPTPFAQI---KGQFHENDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS--- 836
                + G    S+          +    GQ V   IL ++ E  R++LS+K +  +   
Sbjct: 297 EIAPGVQGLVHISEIDHKHIGTPGEVLEPGQQVSVKILGIDEENERVSLSIKATLPNEDV 356

Query: 837 -STDASFMQEHF 847
             +DAS  Q + 
Sbjct: 357 VESDASTTQSYL 368


>gi|160892582|ref|ZP_02073372.1| hypothetical protein CLOL250_00111 [Clostridium sp. L2-50]
 gi|156865623|gb|EDO59054.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
            L2-50]
          Length = 650

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 8/170 (4%)

Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
            E  E +   M V+G VKNVT  G FI L    D  + +S +S G VESP+K F +G  V 
Sbjct: 471  ELFEKIEVGMTVEGTVKNVTDFGAFIDLG-GADGLLHISEMSWGRVESPKKMFKVGDTVK 529

Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
              +  +     ++ ++LK  ++     +E        VG +V G+I R+  +G F+ +E 
Sbjct: 530  AFIKDIN--GDKIALSLKFDETNPWLNAE----EKYAVGTVVTGKIARMTDFGAFVELE- 582

Query: 1480 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
              +  L HVS++S DHV   E +Y+ G++++ K++    E+++ISL +K+
Sbjct: 583  PGVDALLHVSQISYDHVAKPEDVYKIGDEIEAKVVDFKPEEKKISLSVKA 632



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 18/251 (7%)

Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSC 462
           GDI     V  V+ GL +L +   T +  PA + +SD+ E+ + K     +E +  E + 
Sbjct: 392 GDILTGKVVQVVNGGLNVLYE--ETRIFIPASL-VSDLYEKNLDKYLDQDIEFQLTEFNP 448

Query: 463 VRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
            + RI+G R    +     KA+A + L      ++ GM V+G V  V  FGA +   GG 
Sbjct: 449 KKRRIIGNRKKLIVER---KAAAAKEL---FEKIEVGMTVEGTVKNVTDFGAFIDL-GGA 501

Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAE 582
             L  +  MS   +  P K FKVG  +   +  +   +I ++ K       L     YA 
Sbjct: 502 DGLLHISEMSWGRVESPKKMFKVGDTVKAFIKDINGDKIALSLKFDETNPWLNAEEKYAV 561

Query: 583 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642
            T   +  G I ++   G FV    GV      S++  D   +P  +Y +G  ++ +++ 
Sbjct: 562 GT---VVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAKPEDVYKIGDEIEAKVVD 618

Query: 643 SIPASRRINLS 653
             P  ++I+LS
Sbjct: 619 FKPEEKKISLS 629



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G VV GK+  +  FGA V+   GV AL  +  +S   + KP   +K+G E+  +V+  K 
Sbjct: 562 GTVVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAKPEDVYKIGDEIEAKVVDFKP 621

Query: 558 -SKRITVTHKKTL 569
             K+I+++ K  L
Sbjct: 622 EEKKISLSVKALL 634



 Score = 41.2 bits (95), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%)

Query: 1348 LSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES 1407
            LS   D     L   E  +   +V G +  +T  G F+ L   +DA + +S +S  +V  
Sbjct: 542  LSLKFDETNPWLNAEEKYAVGTVVTGKIARMTDFGAFVELEPGVDALLHVSQISYDHVAK 601

Query: 1408 PEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437
            PE  + IG  +  +V+  +P  K++ +++K
Sbjct: 602  PEDVYKIGDEIEAKVVDFKPEEKKISLSVK 631


>gi|429199551|ref|ZP_19191302.1| 30S ribosomal protein S1 [Streptomyces ipomoeae 91-03]
 gi|428664752|gb|EKX64024.1| 30S ribosomal protein S1 [Streptomyces ipomoeae 91-03]
          Length = 497

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VAVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|402313821|ref|ZP_10832731.1| S1 RNA binding domain protein [Lachnospiraceae bacterium ICM7]
 gi|400365603|gb|EJP18654.1| S1 RNA binding domain protein [Lachnospiraceae bacterium ICM7]
          Length = 368

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 180/383 (46%), Gaps = 61/383 (15%)

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1259
            L E  +  H G+ V G V+ + +++ +L +  +   DGI  ++ + SNDN   ++T ++ 
Sbjct: 10   LDESFKTLHTGEVVNGKVIDVKEDQIILNVGFKS--DGIITRS-EYSNDNGLDLRTVVNV 66

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD +  ++ KI  G G +++      Y R+   +  N  + D  + +   + +  KV+++
Sbjct: 67   GDDMEAKVLKINDGEGQVLLS-----YKRLA-QDRGNKKLEDAFNNH---EVLTGKVVQV 117

Query: 1320 SRTVRGTFHV-----ELSLRSSLDGMSSTNSSDLSTDVDTP------------------- 1355
               V G   V      + + +SL  +S T   DLS   DT                    
Sbjct: 118  ---VEGGLSVVVEDARVFIPASL--VSDTFERDLSKYKDTEIEFVITEFNPKRRRIIGDR 172

Query: 1356 -----GKHLEK----IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
                  K  E+     E ++P  +++G VKNVT  G F+ L    D  + +S +S G VE
Sbjct: 173  KQLLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVDLG-GADGLLHISEMSWGRVE 231

Query: 1407 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
            +P+K F  G  V   +  +    +++ +++K  D      +E         G++V G++ 
Sbjct: 232  NPKKVFKSGDTVTAFIKDIS--GEKIALSMKFPDQNPWLDAE----EKFARGNVVKGKVA 285

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
            R+  +G F+ I N  +  L HVS++S DHV+    + + G++V+  I++ ++  ++ISL 
Sbjct: 286  RMTDFGAFVEISN-GVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKKISLS 344

Query: 1527 MKSSYFKNDADNLQMSSEEESDE 1549
            +K+    N+    + +   ESDE
Sbjct: 345  IKALTQANEELEKENARNSESDE 367



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 17/244 (6%)

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSCVRVRILG 469
           KVV+V  G GL + +    V  PA + +SD  E ++ K     +E    E +  R RI+G
Sbjct: 113 KVVQVVEG-GLSVVVEDARVFIPASL-VSDTFERDLSKYKDTEIEFVITEFNPKRRRIIG 170

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
            R        +L A   E        + PG V++G V  V  FGA V   GG   L  + 
Sbjct: 171 DRKQ------LLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVDL-GGADGLLHIS 223

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
            MS   +  P K FK G  +   +  +  ++I ++ K       L     +A      + 
Sbjct: 224 EMSWGRVENPKKVFKSGDTVTAFIKDISGEKIALSMKFPDQNPWLDAEEKFARGN---VV 280

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G + ++   G FV   NGV      S++  D   +PS +  VG  V+  I+    A ++
Sbjct: 281 KGKVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKK 340

Query: 650 INLS 653
           I+LS
Sbjct: 341 ISLS 344



 Score = 47.8 bits (112), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 138/342 (40%), Gaps = 49/342 (14%)

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDDL 666
           G   RSE   D G +  ++ +VG  ++ +++       ++ LS+      +  +  ED  
Sbjct: 45  GIITRSEYSNDNGLDLRTVVNVGDDMEAKVLKINDGEGQVLLSYKRLAQDRGNKKLEDAF 104

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
                L   VV VV     VV   A+ +    IP   ++D  E    +        EF  
Sbjct: 105 NNHEVLTGKVVQVVEGGLSVVVEDARVF----IPASLVSDTFERD--LSKYKDTEIEF-- 156

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           ++   N     ++  +  L+ + ++    A    I P  V+ G V N+ + G FV  LG 
Sbjct: 157 VITEFNPKRRRIIGDRKQLLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVD-LGG 215

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
             G    S+   G+  +  K +  G +V + I D++ E  +I LS+K          F  
Sbjct: 216 ADGLLHISEMSWGRVENPKKVFKSGDTVTAFIKDISGE--KIALSMK----------FPD 263

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
           ++  L+ +                 E F  G+V++GKV    DFG  V      D    +
Sbjct: 264 QNPWLDAE-----------------EKFARGNVVKGKVARMTDFGAFVEISNGVDALLHV 306

Query: 905 T-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
           +     H +     ++ G  ++A I++  +A++ + LS+K +
Sbjct: 307 SQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKKISLSIKAL 348


>gi|295696379|ref|YP_003589617.1| RNA binding S1 domain-containing protein [Kyrpidia tusciae DSM 2912]
 gi|295411981|gb|ADG06473.1| RNA binding S1 domain protein [Kyrpidia tusciae DSM 2912]
          Length = 383

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 94/166 (56%), Gaps = 6/166 (3%)

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            L P  I+ G V+ +T+ G F+ +   +D  V +S L+   VE P +    G  V  +VL 
Sbjct: 186  LQPGDIITGKVQRLTNFGAFVDVG-GVDGLVHISELAWHRVEHPSEVVKEGDEVTVKVLK 244

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1484
            V+P  +RV +++K ++    S          HVGD+V G ++R+ S+G F+ +E   + G
Sbjct: 245  VDPERERVSLSIKEANPGPWSGVS----ERYHVGDVVTGTVRRLVSFGAFVELE-PGVEG 299

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L H+S+++   +   + +   G++V+VKIL V++E +RISL ++ +
Sbjct: 300  LVHISQIANRRIGTPQEVLEPGQEVRVKILDVNEEDQRISLSIREA 345



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 126/274 (45%), Gaps = 27/274 (9%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            +H+GD+V GRI+KI  G   + V +G    G +   EL  + V  P              
Sbjct: 13   LHKGDVVKGRITKIEDG--QVFVDVGYKFDGVIPIGELSALRVESP-------------- 56

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
               S  V+    VE+ ++   D       S  + D +   + L++  +      VQ  V 
Sbjct: 57   ---SDVVQVGDEVEVRVQRINDEEGKLVLSKKAVDAEKAWERLQQRFESQETFEVQ--VA 111

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
            +V   G    +   + A +  S +   +VE    E+  G+ +  +V  ++    +V ++ 
Sbjct: 112  DVVKGGLVADVG--VRAFIPASLVERHFVEDF-SEYK-GRTLRVKVAELDRSDNKVILSQ 167

Query: 1437 KTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496
            K        Q +   L  L  GDI+ G+++R+ ++G F+ +   +  GL H+SEL+   V
Sbjct: 168  KAVLEEEYQQKKEEVLHRLQPGDIITGKVQRLTNFGAFVDVGGVD--GLVHISELAWHRV 225

Query: 1497 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            ++   + + G++V VK+LKVD E+ R+SL +K +
Sbjct: 226  EHPSEVVKEGDEVTVKVLKVDPERERVSLSIKEA 259



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++PG ++ GKV  + +FGA V   GGV  L  +  ++   +  P +  K G E+  +VL 
Sbjct: 186 LQPGDIITGKVQRLTNFGAFVDV-GGVDGLVHISELAWHRVEHPSEVVKEGDEVTVKVLK 244

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGVQG 611
           V  +R  V+     +  K A    ++  ++R     +  G + ++   G FV    GV+G
Sbjct: 245 VDPERERVS-----LSIKEANPGPWSGVSERYHVGDVVTGTVRRLVSFGAFVELEPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               S++       P  +   GQ V+ +I+      +RI+LS 
Sbjct: 300 LVHISQIANRRIGTPQEVLEPGQEVRVKILDVNEEDQRISLSI 342



 Score = 48.1 bits (113), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 142/345 (41%), Gaps = 25/345 (7%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VVKG++  ++     V        + P+  +S   +  P    +VG E+  RV  +  
Sbjct: 16  GDVVKGRITKIEDGQVFVDVGYKFDGVIPIGELSALRVESPSDVVQVGDEVEVRVQRIND 75

Query: 559 KRITVTHKKTLVKSKLAI--LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +   +   K  V ++ A   L    E+ +       +  + K G       GV+ F P S
Sbjct: 76  EEGKLVLSKKAVDAEKAWERLQQRFESQETFEVQ--VADVVKGGLVADV--GVRAFIPAS 131

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSEDDLVKL--G 670
            L      E  S Y  G+ ++ ++     +  ++ LS       +  +  E+ L +L  G
Sbjct: 132 -LVERHFVEDFSEYK-GRTLRVKVAELDRSDNKVILSQKAVLEEEYQQKKEEVLHRLQPG 189

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFD-QLL 728
            +++G V  +T     V V   G   G +    LA H +EH +    V+K G E   ++L
Sbjct: 190 DIITGKVQRLTNFGAFVDV---GGVDGLVHISELAWHRVEHPS---EVVKEGDEVTVKVL 243

Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
            +D E   + LS K +   +       +   H   VV G V  ++  G FV     + G 
Sbjct: 244 KVDPERERVSLSIKEA---NPGPWSGVSERYHVGDVVTGTVRRLVSFGAFVELEPGVEGL 300

Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
              S+  + +     +    GQ VR  ILDVN E  RI+LS++++
Sbjct: 301 VHISQIANRRIGTPQEVLEPGQEVRVKILDVNEEDQRISLSIREA 345



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
            ++ +L  LH GD+V G+I ++E   +F+ +      G+  + ELS   V++   + + G+
Sbjct: 6    DMTDLVALHKGDVVKGRITKIEDGQVFVDV-GYKFDGVIPIGELSALRVESPSDVVQVGD 64

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
            +V+V++ +++ E+ ++ L  K+   +   + LQ   E +
Sbjct: 65   EVEVRVQRINDEEGKLVLSKKAVDAEKAWERLQQRFESQ 103


>gi|84515230|ref|ZP_01002592.1| 30S ribosomal protein S1 [Loktanella vestfoldensis SKA53]
 gi|84510513|gb|EAQ06968.1| 30S ribosomal protein S1 [Loktanella vestfoldensis SKA53]
          Length = 552

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 175/409 (42%), Gaps = 67/409 (16%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ V G V  +    A + +   +   L + D A+     PSE+        IG+ +   
Sbjct: 191  GQEVDGVVKNITEYGAFVDLG-GVDGLLHVTDMAWRRVNHPSEI------LAIGETIKVQ 243

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            V+ INKE   + L ++  Q+           D ++     G +  GR++ I     G  V
Sbjct: 244  VIKINKETHRISLGMKQLQED--------PWDAVEAKFSLGSVHQGRVTNITD--YGAFV 293

Query: 1280 QIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            ++   + G VH +E+    KN+     +S   E   V+  VLEI    R         R 
Sbjct: 294  ELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQE---VEVMVLEIDSAKR---------RV 341

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            SL G+  T  +      +T   H E  E       V+G VKN+T  G FI L   +D  V
Sbjct: 342  SL-GLKQTQRNPWEVFAET---HPEGTE-------VEGEVKNITEFGLFIGLEGDIDGMV 390

Query: 1396 LLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
             LS+L+ DG  E    +F  G +V  +V  V+   +R+ +++K  DS   + +    +  
Sbjct: 391  HLSDLTWDGRGEDVIGDFRKGDMVKAKVAEVDVEKERISLSIKALDSDPFADA----IGG 446

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
            +  G I+  ++ ++E  G  I +E   +      S+LS D  +     + AG+KV V++ 
Sbjct: 447  VKRGSIITVEVTKIEDGG--IEVEYEGMKSFIRRSDLSRDRAEQRPERFGAGDKVDVRVT 504

Query: 1515 KVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLL 1563
             +D + R++ L +K+                E  EA+E+ GS +  + L
Sbjct: 505  NIDSKTRKLGLSIKAREIA------------EEKEAVEQFGSSDSGASL 541



 Score = 64.7 bits (156), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 140/311 (45%), Gaps = 55/311 (17%)

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G +H T++    V+ P      G+ +K +V++I++    T  + L ++ 
Sbjct: 205  GAFVDLG-GVDGLLHVTDMAWRRVNHPSEILAIGETIKVQVIKINKE---THRISLGMKQ 260

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
                        L  D   P   +E     S   + QG V N+T  G F+ L   ++  V
Sbjct: 261  ------------LQED---PWDAVEA--KFSLGSVHQGRVTNITDYGAFVELEAGVEGLV 303

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGR------VLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
             +S +S       +K    GK+V+        VL ++   +RV + LK +      ++  
Sbjct: 304  HVSEMS-----WTKKNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLGLKQT-----QRNPW 353

Query: 1450 NNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGE 1507
               +  H  G  V G++K +  +GLFI +E  ++ G+ H+S+L+ D   +++   +R G+
Sbjct: 354  EVFAETHPEGTEVEGEVKNITEFGLFIGLEG-DIDGMVHLSDLTWDGRGEDVIGDFRKGD 412

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSS 1567
             VK K+ +VD EK RISL +K+                +SD   + +G   R S++    
Sbjct: 413  MVKAKVAEVDVEKERISLSIKAL---------------DSDPFADAIGGVKRGSIITVEV 457

Query: 1568 VAVQDMDMESE 1578
              ++D  +E E
Sbjct: 458  TKIEDGGIEVE 468



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 9/176 (5%)

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGK 1416
            +  E I +L+    V G VKN+T  G F+ L   +D  + +++++   V  P +   IG+
Sbjct: 180  QRAEVIGNLTEGQEVDGVVKNITEYGAFVDLG-GVDGLLHVTDMAWRRVNHPSEILAIGE 238

Query: 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFIT 1476
             +  +V+ +   + R+ + +K          E    +   +G +  G++  +  YG F+ 
Sbjct: 239  TIKVQVIKINKETHRISLGMKQLQEDPWDAVE----AKFSLGSVHQGRVTNITDYGAFVE 294

Query: 1477 IENTNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +E   + GL HVSE+S     N+    I    ++V+V +L++D  KRR+SLG+K +
Sbjct: 295  LE-AGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLGLKQT 348



 Score = 58.2 bits (139), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%)

Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
            +SR   ++E+  + NL  G  V G +K +  YG F+ +   +  GL HV++++   V++ 
Sbjct: 175  ESRAEQRAEV--IGNLTEGQEVDGVVKNITEYGAFVDLGGVD--GLLHVTDMAWRRVNHP 230

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
              I   GE +KV+++K++KE  RISLGMK
Sbjct: 231  SEILAIGETIKVQVIKINKETHRISLGMK 259



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 149/349 (42%), Gaps = 49/349 (14%)

Query: 502 VKGKVIAVDSFGAIVQFPGG------VKALCPLPHMSE-FEIVKPGKKFKVGAELVFRVL 554
           VKG    VD  GA+   PG       V+   PL +M + F+I+K  ++         R  
Sbjct: 115 VKGG-FTVDLGGAVAFLPGSQVDVRPVRDAGPLMNMKQPFQILKMDRR---------RGN 164

Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            V S+R  +   +   + +  ++ +  E  +     G +  I ++G FV    GV G   
Sbjct: 165 IVVSRRAILEESRA--EQRAEVIGNLTEGQE---VDGVVKNITEYGAFVDL-GGVDGLLH 218

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LG 670
            +++       PS +  +G+ +K +++     + RI+L   MK  +    D V+    LG
Sbjct: 219 VTDMAWRRVNHPSEILAIGETIKVQVIKINKETHRISLG--MKQLQEDPWDAVEAKFSLG 276

Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG-----YEFD 725
           S+  G V  +T     V + A          E L  H+   +  K  + PG      +  
Sbjct: 277 SVHQGRVTNITDYGAFVELEAG--------VEGLV-HVSEMSWTKKNVHPGKIVSTSQEV 327

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSV-VHGYVCNIIETGCFVRFLG 783
           +++VL+ +S+   +S     +   Q+ P +  +  HP    V G V NI E G F+   G
Sbjct: 328 EVMVLEIDSAKRRVSLG---LKQTQRNPWEVFAETHPEGTEVEGEVKNITEFGLFIGLEG 384

Query: 784 RLTGFAPRSKAV-DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + G    S    DG+  D+   +  G  V++ + +V+ E  RI+LS+K
Sbjct: 385 DIDGMVHLSDLTWDGRGEDVIGDFRKGDMVKAKVAEVDVEKERISLSIK 433



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 39/223 (17%)

Query: 726 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           Q+L +D    N+++S +  L  S A+Q      ++     V G V NI E G FV  LG 
Sbjct: 154 QILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLTEGQEVDGVVKNITEYGAFVD-LGG 212

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
           + G    +     +    S+   +G++++  ++ +N ET RI+L +KQ            
Sbjct: 213 VDGLLHVTDMAWRRVNHPSEILAIGETIKVQVIKINKETHRISLGMKQ------------ 260

Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
                      LQ    +  E K    F +GSV +G+V    D+G  V  E  + V G +
Sbjct: 261 -----------LQEDPWDAVEAK----FSLGSVHQGRVTNITDYGAFVELE--AGVEGLV 303

Query: 905 THHQLA--------GATVESGSVIQAAILDVAKAERLVDLSLK 939
              +++        G  V +   ++  +L++  A+R V L LK
Sbjct: 304 HVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLGLK 346



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 97/471 (20%), Positives = 192/471 (40%), Gaps = 37/471 (7%)

Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-NSGIDVKPG 277
           +LL +   ++T  EG V+   V +IE    I+  G     G +     A      D+K G
Sbjct: 6   ALLNESFEMDTPAEGSVVKGKVIAIEAGQAIIDVGY-KMEGRIDLKEFANPGEAPDIKVG 64

Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQS--ILEN 335
             ++  +R ++  R    +S +     +   +  K  + +  V G +   RV+    ++ 
Sbjct: 65  DTVEVFLRQVENARGEAVISREMARREEAWDRLEKAYADEERVDGAIFG-RVKGGFTVDL 123

Query: 336 GVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
           G  ++FL      VD+  +++  P  N K  +        +IL +D     + ++    L
Sbjct: 124 GGAVAFLP--GSQVDVRPVRDAGPLMNMKQPF--------QILKMDRRRGNIVVSRRAIL 173

Query: 396 LHNRAPPSHVKVGDIYDQSKVVRVDRGL---GLLLDIPSTPVSTPAYVTISDVAEEEVRK 452
             +RA      +G++ +  +V  V + +   G  +D+          + ++D+A   V  
Sbjct: 174 EESRAEQRAEVIGNLTEGQEVDGVVKNITEYGAFVDLGGVD----GLLHVTDMAWRRVNH 229

Query: 453 LEKKYKEGSCVRVRILGFR---HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAV 509
             +    G  ++V+++      H   L    L+   ++ +    +    G V +G+V  +
Sbjct: 230 PSEILAIGETIKVQVIKINKETHRISLGMKQLQEDPWDAV---EAKFSLGSVHQGRVTNI 286

Query: 510 DSFGAIVQFPGGVKALCPLPHMSEFEI-VKPGKKFKVGAELVFRVLGVKS--KRITVTHK 566
             +GA V+   GV+ L  +  MS  +  V PGK      E+   VL + S  +R+++  K
Sbjct: 287 TDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLGLK 346

Query: 567 KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDP-GCE 625
           +T          ++ E T+     G +  I + G F+     + G    S+L  D  G +
Sbjct: 347 QTQRNPWEVFAETHPEGTE---VEGEVKNITEFGLFIGLEGDIDGMVHLSDLTWDGRGED 403

Query: 626 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL--VKLGSLVS 674
               +  G +VK ++        RI+LS     +    D +  VK GS+++
Sbjct: 404 VIGDFRKGDMVKAKVAEVDVEKERISLSIKALDSDPFADAIGGVKRGSIIT 454



 Score = 47.0 bits (110), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 110/488 (22%), Positives = 183/488 (37%), Gaps = 72/488 (14%)

Query: 486 FEGLV---FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK 542
           FE L+   F       G VVKGKVIA+++  AI+     ++    L      E   PG+ 
Sbjct: 4   FEALLNESFEMDTPAEGSVVKGKVIAIEAGQAIIDVGYKMEGRIDLK-----EFANPGEA 58

Query: 543 --FKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHG 600
              KVG  +   +  V++ R      + + + + A         D     G I    K G
Sbjct: 59  PDIKVGDTVEVFLRQVENARGEAVISREMARREEAWDRLEKAYADEERVDGAIFGRVK-G 117

Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMM 656
            F     G   F P S++ + P  +   + ++ Q  +     R   +I  SRR  L    
Sbjct: 118 GFTVDLGGAVAFLPGSQVDVRPVRDAGPLMNMKQPFQILKMDRRRGNIVVSRRAILEESR 177

Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA----DHLEHAT 712
              R      +  G  V GVV  +T     V +   G   G +    +A    +H     
Sbjct: 178 AEQRAEVIGNLTEGQEVDGVVKNITEYGAFVDL---GGVDGLLHVTDMAWRRVNHPSEIL 234

Query: 713 VMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVC 770
            +   IK      Q++ ++ E+  + L  K       Q+ P DA  +     SV  G V 
Sbjct: 235 AIGETIKV-----QVIKINKETHRISLGMK-----QLQEDPWDAVEAKFSLGSVHQGRVT 284

Query: 771 NIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
           NI + G FV     + G    S+ +   +     K     Q V   +L+++S   R++L 
Sbjct: 285 NITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDSAKRRVSLG 344

Query: 830 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
           LKQ+  +  +  F + H                G+E            +EG+V    +FG
Sbjct: 345 LKQTQRNPWEV-FAETH--------------PEGTE------------VEGEVKNITEFG 377

Query: 890 VVVSFEEHSDVYGFITHHQLA----GATV----ESGSVIQAAILDVAKAERLVDLSLKTV 941
           + +  E   D+ G +    L     G  V      G +++A + +V   +  + LS+K +
Sbjct: 378 LFIGLE--GDIDGMVHLSDLTWDGRGEDVIGDFRKGDMVKAKVAEVDVEKERISLSIKAL 435

Query: 942 FIDRFREA 949
             D F +A
Sbjct: 436 DSDPFADA 443


>gi|330444481|ref|YP_004377467.1| 30S ribosomal protein S1 [Chlamydophila pecorum E58]
 gi|328807591|gb|AEB41764.1| ribosomal protein S1 [Chlamydophila pecorum E58]
          Length = 580

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 183/399 (45%), Gaps = 58/399 (14%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+   G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGELRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --VILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVSGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNI-CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                G  ++I   + G +H +E+  +  V DP    ++G  V+  VL I +        +
Sbjct: 317  PY--GAFIEIEEGIEGLIHISEMSWVKNVVDPSEIVNKGDEVEAIVLSIQKD-----EGK 369

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            +SL     G+  T  +        P  ++E  E     + V+  ++N+T+ G F+ L   
Sbjct: 370  ISL-----GLKQTEHN--------PWDNIE--EKYPIGLHVKAEIRNLTNYGAFVELEPG 414

Query: 1391 LDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
            ++  + +S++S    V  P + F  G +V   +LSV+  SK++ + +K   +    + E 
Sbjct: 415  IEGLIHISDMSWIKKVSHPSELFKKGDVVEAVILSVDKESKKITLGVKQLSANPWDEIE- 473

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
               +    G  + G + ++ ++G F+ ++N  + GL HVSELSE     +E I   G+ V
Sbjct: 474  ---AMFPAGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFAKVEDIISIGDTV 529

Query: 1510 KVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1548
              K++K+D + +++SL +K         + + SSE +SD
Sbjct: 530  HAKVIKLDPDHKKVSLSVKEYLVNQSLKDEENSSELDSD 568



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 142/287 (49%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I++ + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++   + +G V
Sbjct: 184  ILKINVERR---NVVVSRRELLEAERISKKAEL-------------IEQITIGELRKGIV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVVILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  V G+I ++  YG FI IE   + GL H+SE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRVSGKIVKLLPYGAFIEIEE-GIEGLIHISEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+  +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NVVDPSEIVNK-GDEVEAIVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVG--AELVFRVLG 555
           G+ VK ++  + ++GA V+   G++ L  +  MS  + V  P + FK G   E V   + 
Sbjct: 392 GLHVKAEIRNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGDVVEAVILSVD 451

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
            +SK+IT+  K+        I + +   +D     G +TKI   G FV   NG++G    
Sbjct: 452 KESKKITLGVKQLSANPWDEIEAMFPAGSD---ISGVVTKITAFGAFVELQNGIEGLIHV 508

Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
           SEL   P  +   +  +G  V  +++   P  ++++LS
Sbjct: 509 SELSEKPFAKVEDIISIGDTVHAKVIKLDPDHKKVSLS 546



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 104/508 (20%), Positives = 205/508 (40%), Gaps = 77/508 (15%)

Query: 462 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 521
           C+   +  F+ L   A GI  +        +++DV+PG ++KG V+ ++    +V    G
Sbjct: 20  CLAEDVAEFKDLLYTAHGITSSEDE-----SNNDVQPGAILKGTVVDINKDFVVVDV--G 72

Query: 522 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSS 579
           +K+   +P M+EF  +   +   +GAE+   +   +    +I ++ +K   + +   + +
Sbjct: 73  LKSEGVIP-MAEF--INSSEGLALGAEVEVYLDQAEDDEGKIVLSREKATRQRQWEYILA 129

Query: 580 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCR 639
           + E     I  G IT+  K G  V    G++ F P S++  D     +   +VG+V + +
Sbjct: 130 HCEEGS--IVKGQITRKVKGGLIVDI--GMEAFLPGSQI--DNKKIKNLDDYVGKVCEFK 183

Query: 640 IMSSIPASRR---INLSFMMKPTRVSED----DLVKLGSLVSGVVDVVTPNAVVVYVIAK 692
           I+  I   RR   ++   +++  R+S+     + + +G L  G+V  +T   V  ++   
Sbjct: 184 ILK-INVERRNVVVSRRELLEAERISKKAELIEQITIGELRKGIVKNITDFGV--FLDLD 240

Query: 693 GYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-----LLVLDNESSNLLLSAKYSLIN 747
           G       T+     + H + M        E +Q     +L +D E   + L  K    N
Sbjct: 241 GIDGLLHITDMTWKRIRHPSEM-------VELNQELEVVILSVDKEKGRVALGLKQKEHN 293

Query: 748 SAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTY 806
             + +        P   V G +  ++  G F+     + G    S+ +      D S+  
Sbjct: 294 PWEDIEKKYP---PGKRVSGKIVKLLPYGAFIEIEEGIEGLIHISEMSWVKNVVDPSEIV 350

Query: 807 YVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSEL 866
             G  V + +L +  + G+I+L LKQ+  +  D         +EEK              
Sbjct: 351 NKGDEVEAIVLSIQKDEGKISLGLKQTEHNPWDN--------IEEK-------------- 388

Query: 867 KWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVI 920
                + IG  ++ ++    ++G  V  E       H     +I          + G V+
Sbjct: 389 -----YPIGLHVKAEIRNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGDVV 443

Query: 921 QAAILDVAKAERLVDLSLKTVFIDRFRE 948
           +A IL V K  + + L +K +  + + E
Sbjct: 444 EAVILSVDKESKKITLGVKQLSANPWDE 471


>gi|21220480|ref|NP_626259.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)]
 gi|289772280|ref|ZP_06531658.1| 30S ribosomal protein S1 [Streptomyces lividans TK24]
 gi|5689891|emb|CAB52054.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)]
 gi|289702479|gb|EFD69908.1| 30S ribosomal protein S1 [Streptomyces lividans TK24]
          Length = 502

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-GIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368


>gi|303245616|ref|ZP_07331899.1| ribosomal protein S1 [Desulfovibrio fructosovorans JJ]
 gi|302492879|gb|EFL52744.1| ribosomal protein S1 [Desulfovibrio fructosovorans JJ]
          Length = 576

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 152/348 (43%), Gaps = 34/348 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G VV G+V  +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQVVTGRVKNITEYGVFVDL-GGLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQ 266

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           + +++++  K+ +      I   Y E T RL   G +T +  +G FV    GV+G    S
Sbjct: 267 EKQKVSLGMKQLVSDPWENIAGKYPEGT-RLA--GKVTNLVDYGAFVELEAGVEGLVHIS 323

Query: 617 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGS 671
           E+        PS M HVG  V+  ++S  P  +RI+L   MK  R +  D+V      G+
Sbjct: 324 EMSWTRKLRHPSQMVHVGDEVEVVVLSVDPEKKRISLG--MKQVRPNPWDIVAEKYPEGT 381

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 725
           ++ G V  +T   + +     G   G     H++D     +  K V  PG  F       
Sbjct: 382 ILEGSVKNITEFGIFI-----GIEDGIDGLIHVSD----ISWTKKVRHPGEMFKTGDIVM 432

Query: 726 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 783
            ++L +D E+    L  K    +   ++P      +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDKENEKFTLGIKQLSEDPWTRVPD----TYPVGTMVKGTVTNITDFGLFVEVEE 488

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + G    S+    +    ++ Y  G  + + ++ V+++  R+ LS+K
Sbjct: 489 GIEGLVHVSEISRKKVKTPAELYKEGDEIEAKVIHVSADERRLGLSIK 536



 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 170/375 (45%), Gaps = 54/375 (14%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
            GQ VTG V  +  E+ +      L   + I D +++    P EL       H+G  +   
Sbjct: 208  GQVVTGRVKNI-TEYGVFVDLGGLDGLMHITDMSWKRIKHPKEL------VHLGDELELK 260

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VLS ++EK+ + L ++     +SD       +N+     EG  + G+++ ++    G  V
Sbjct: 261  VLSFDQEKQKVSLGMKQL---VSDPW-----ENIAGKYPEGTRLAGKVTNLVDY--GAFV 310

Query: 1280 QIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            ++   + G VH +E+     +  P      G  V+  VL +    +         R SL 
Sbjct: 311  ELEAGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPEKK---------RISL- 360

Query: 1339 GMSST--NSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
            GM     N  D+              E      I++G VKN+T  G FI +   +D  + 
Sbjct: 361  GMKQVRPNPWDIVA------------EKYPEGTILEGSVKNITEFGIFIGIEDGIDGLIH 408

Query: 1397 LSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1455
            +S++S    V  P + F  G +V  +VL+V+  +++  + +K       S+     + + 
Sbjct: 409  VSDISWTKKVRHPGEMFKTGDIVMAKVLTVDKENEKFTLGIKQ-----LSEDPWTRVPDT 463

Query: 1456 H-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
            + VG +V G +  +  +GLF+ +E   + GL HVSE+S   V     +Y+ G++++ K++
Sbjct: 464  YPVGTMVKGTVTNITDFGLFVEVEE-GIEGLVHVSEISRKKVKTPAELYKEGDEIEAKVI 522

Query: 1515 KVDKEKRRISLGMKS 1529
             V  ++RR+ L +KS
Sbjct: 523  HVSADERRLGLSIKS 537



 Score = 67.8 bits (164), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 134/282 (47%), Gaps = 34/282 (12%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIG---PHLYGRVHFTELKNICVSDPLSGYD 1307
            D ++    + D++ GRI + + G  G  V +G     L G     +L+ +   D L G  
Sbjct: 112  DKLEEIQEKDDVITGRIVRRIKG--GYTVDLGGVEAFLPG--SHVDLRPVPDMDALVG-- 165

Query: 1308 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1367
              Q  + +VL+I+R      +V +S R  L+    +   DL             ++ L  
Sbjct: 166  --QEFEFRVLKINRR---RSNVIVSRRVLLEERRDSMRKDL-------------LKTLEE 207

Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEP 1427
              +V G VKN+T  G F+ L   LD  + ++++S   ++ P++   +G  +  +VLS + 
Sbjct: 208  GQVVTGRVKNITEYGVFVDLG-GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQ 266

Query: 1428 LSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
              ++V + +K    +  S    N       G  + G++  +  YG F+ +E   + GL H
Sbjct: 267  EKQKVSLGMK----QLVSDPWENIAGKYPEGTRLAGKVTNLVDYGAFVELE-AGVEGLVH 321

Query: 1488 VSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            +SE+S    + +   +   G++V+V +L VD EK+RISLGMK
Sbjct: 322  ISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPEKKRISLGMK 363



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 151/391 (38%), Gaps = 83/391 (21%)

Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM--- 641
           D +IT   + +I+  G +     GV+ F P S + L P  +  ++  VGQ  + R++   
Sbjct: 121 DDVITGRIVRRIK--GGYTVDLGGVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKIN 176

Query: 642 ---SSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVV-------- 687
              S++  SRR+ L       R    DL+K    G +V+G V  +T   V V        
Sbjct: 177 RRRSNVIVSRRVLLEERRDSMR---KDLLKTLEEGQVVTGRVKNITEYGVFVDLGGLDGL 233

Query: 688 -YVIAKGYSKGTIPTE--HLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 744
            ++    + +   P E  HL D LE                ++L  D E   + L  K  
Sbjct: 234 MHITDMSWKRIKHPKELVHLGDELEL---------------KVLSFDQEKQKVSLGMKQL 278

Query: 745 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-ADLS 803
           + +  + +   A      + + G V N+++ G FV     + G    S+    ++    S
Sbjct: 279 VSDPWENI---AGKYPEGTRLAGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHPS 335

Query: 804 KTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNG 863
           +  +VG  V   +L V+ E  RI+L +KQ   +  D                        
Sbjct: 336 QMVHVGDEVEVVVLSVDPEKKRISLGMKQVRPNPWDIV---------------------- 373

Query: 864 SELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLA--------GATVE 915
                 E +  G+++EG V    +FG+ +  E+  D  G I    ++        G   +
Sbjct: 374 -----AEKYPEGTILEGSVKNITEFGIFIGIEDGID--GLIHVSDISWTKKVRHPGEMFK 426

Query: 916 SGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
           +G ++ A +L V K      L +K +  D +
Sbjct: 427 TGDIVMAKVLTVDKENEKFTLGIKQLSEDPW 457



 Score = 50.8 bits (120), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 168/384 (43%), Gaps = 35/384 (9%)

Query: 189 VGQLVSCIVLQLDDDKKE-IGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG 247
           VGQ     VL+++  +   I  R++ L  R   + K L L+T++EG V+T  VK+I ++G
Sbjct: 164 VGQEFEFRVLKINRRRSNVIVSRRVLLEERRDSMRKDL-LKTLEEGQVVTGRVKNITEYG 222

Query: 248 YILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTV 303
             +  G     G +   +++    ++    V  G  L+  V S D+ ++ V L      +
Sbjct: 223 VFVDLG--GLDGLMHITDMSWKRIKHPKELVHLGDELELKVLSFDQEKQKVSLG-----M 275

Query: 304 SKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNW 363
            + V+   + I+      G  ++ +V ++++ G  +       G V I  +  T    + 
Sbjct: 276 KQLVSDPWENIA-GKYPEGTRLAGKVTNLVDYGAFVELEAGVEGLVHISEMSWTRKLRHP 334

Query: 364 KNDYNQHKKVNARILFVDPTSRAVGLTL-----NPY-LLHNRAPPSHVKVGDIYDQSKVV 417
               +   +V   +L VDP  + + L +     NP+ ++  + P   +  G + + ++  
Sbjct: 335 SQMVHVGDEVEVVVLSVDPEKKRISLGMKQVRPNPWDIVAEKYPEGTILEGSVKNITE-- 392

Query: 418 RVDRGLGLLLDIPSTPVSTPAYVTISDVA-EEEVRKLEKKYKEGSCVRVRILGF-RHLEG 475
                 G+ + I          + +SD++  ++VR   + +K G  V  ++L   +  E 
Sbjct: 393 -----FGIFIGIED---GIDGLIHVSDISWTKKVRHPGEMFKTGDIVMAKVLTVDKENEK 444

Query: 476 LATGILKASAFEGLVFTHSDVKP-GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF 534
              GI + S  E       D  P G +VKG V  +  FG  V+   G++ L  +  +S  
Sbjct: 445 FTLGIKQLS--EDPWTRVPDTYPVGTMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRK 502

Query: 535 EIVKPGKKFKVGAELVFRVLGVKS 558
           ++  P + +K G E+  +V+ V +
Sbjct: 503 KVKTPAELYKEGDEIEAKVIHVSA 526


>gi|239986932|ref|ZP_04707596.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 11379]
 gi|291443880|ref|ZP_06583270.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998]
 gi|291346827|gb|EFE73731.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998]
          Length = 504

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371



 Score = 45.1 bits (105), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 127/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQIG--QVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQAN 369


>gi|182439327|ref|YP_001827046.1| 30S ribosomal protein S1 [Streptomyces griseus subsp. griseus NBRC
            13350]
 gi|326779979|ref|ZP_08239244.1| RNA binding S1 domain protein [Streptomyces griseus XylebKG-1]
 gi|411004248|ref|ZP_11380577.1| 30S ribosomal protein S1 [Streptomyces globisporus C-1027]
 gi|178467843|dbj|BAG22363.1| putative 30S ribosomal protein S1 [Streptomyces griseus subsp.
            griseus NBRC 13350]
 gi|326660312|gb|EGE45158.1| RNA binding S1 domain protein [Streptomyces griseus XylebKG-1]
          Length = 505

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371



 Score = 45.1 bits (105), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 127/285 (44%), Gaps = 37/285 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQIG--QVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQAN 369


>gi|30261593|ref|NP_843970.1| 30S ribosomal protein S1 [Bacillus anthracis str. Ames]
 gi|47526793|ref|YP_018142.1| 30S ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184425|ref|YP_027677.1| 30S ribosomal protein S1 [Bacillus anthracis str. Sterne]
 gi|49477253|ref|YP_035714.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar konkukian
            str. 97-27]
 gi|65318864|ref|ZP_00391823.1| COG0539: Ribosomal protein S1 [Bacillus anthracis str. A2012]
 gi|118477052|ref|YP_894203.1| 30S ribosomal protein S1 [Bacillus thuringiensis str. Al Hakam]
 gi|165869571|ref|ZP_02214230.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
 gi|167633256|ref|ZP_02391581.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
 gi|167639190|ref|ZP_02397463.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
 gi|170686252|ref|ZP_02877474.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
 gi|170706479|ref|ZP_02896939.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
 gi|177650520|ref|ZP_02933487.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
 gi|190568598|ref|ZP_03021503.1| ribosomal protein S1 [Bacillus anthracis str. Tsiankovskii-I]
 gi|196033526|ref|ZP_03100938.1| ribosomal protein S1 [Bacillus cereus W]
 gi|196046631|ref|ZP_03113855.1| ribosomal protein S1 [Bacillus cereus 03BB108]
 gi|218902709|ref|YP_002450543.1| 30S ribosomal protein S1 [Bacillus cereus AH820]
 gi|225863461|ref|YP_002748839.1| ribosomal protein S1 [Bacillus cereus 03BB102]
 gi|227815655|ref|YP_002815664.1| 30S ribosomal protein S1 [Bacillus anthracis str. CDC 684]
 gi|228914171|ref|ZP_04077789.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
            BGSC 4CC1]
 gi|228926628|ref|ZP_04089697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|228932883|ref|ZP_04095750.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228945197|ref|ZP_04107553.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
            BGSC 4AJ1]
 gi|229090559|ref|ZP_04221794.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
 gi|229121140|ref|ZP_04250377.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
 gi|229183792|ref|ZP_04311009.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
 gi|229604611|ref|YP_002866001.1| 30S ribosomal protein S1 [Bacillus anthracis str. A0248]
 gi|254683085|ref|ZP_05146946.1| 30S ribosomal protein S1 [Bacillus anthracis str. CNEVA-9066]
 gi|254733536|ref|ZP_05191257.1| 30S ribosomal protein S1 [Bacillus anthracis str. Western North
            America USA6153]
 gi|254740845|ref|ZP_05198533.1| 30S ribosomal protein S1 [Bacillus anthracis str. Kruger B]
 gi|254755083|ref|ZP_05207117.1| 30S ribosomal protein S1 [Bacillus anthracis str. Vollum]
 gi|254759620|ref|ZP_05211644.1| 30S ribosomal protein S1 [Bacillus anthracis str. Australia 94]
 gi|301053136|ref|YP_003791347.1| 30S ribosomal protein S1 [Bacillus cereus biovar anthracis str. CI]
 gi|376265440|ref|YP_005118152.1| 30S ribosomal protein S1 [Bacillus cereus F837/76]
 gi|386735301|ref|YP_006208482.1| 30S ribosomal protein S1 [Bacillus anthracis str. H9401]
 gi|421638607|ref|ZP_16079202.1| 30S ribosomal protein S1 [Bacillus anthracis str. BF1]
 gi|423552668|ref|ZP_17528995.1| ribosomal protein S1 [Bacillus cereus ISP3191]
 gi|30255447|gb|AAP25456.1| ribosomal protein S1 [Bacillus anthracis str. Ames]
 gi|47501941|gb|AAT30617.1| ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178352|gb|AAT53728.1| ribosomal protein S1 [Bacillus anthracis str. Sterne]
 gi|49328809|gb|AAT59455.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus
            thuringiensis serovar konkukian str. 97-27]
 gi|118416277|gb|ABK84696.1| SSU ribosomal protein S1P [Bacillus thuringiensis str. Al Hakam]
 gi|164715011|gb|EDR20529.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
 gi|167512980|gb|EDR88353.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
 gi|167531294|gb|EDR93972.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
 gi|170128577|gb|EDS97444.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
 gi|170669949|gb|EDT20690.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
 gi|172083664|gb|EDT68724.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
 gi|190560198|gb|EDV14178.1| ribosomal protein S1 [Bacillus anthracis str. Tsiankovskii-I]
 gi|195993960|gb|EDX57916.1| ribosomal protein S1 [Bacillus cereus W]
 gi|196022564|gb|EDX61247.1| ribosomal protein S1 [Bacillus cereus 03BB108]
 gi|218535461|gb|ACK87859.1| ribosomal protein S1 [Bacillus cereus AH820]
 gi|225787178|gb|ACO27395.1| ribosomal protein S1 [Bacillus cereus 03BB102]
 gi|227004701|gb|ACP14444.1| ribosomal protein S1 [Bacillus anthracis str. CDC 684]
 gi|228599641|gb|EEK57244.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
 gi|228662259|gb|EEL17862.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
 gi|228692762|gb|EEL46486.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
 gi|228814432|gb|EEM60697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
            BGSC 4AJ1]
 gi|228826804|gb|EEM72571.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228833004|gb|EEM78572.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|228845504|gb|EEM90537.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
            BGSC 4CC1]
 gi|229269019|gb|ACQ50656.1| ribosomal protein S1 [Bacillus anthracis str. A0248]
 gi|300375305|gb|ADK04209.1| 30S ribosomal protein S1 [Bacillus cereus biovar anthracis str. CI]
 gi|364511240|gb|AEW54639.1| SSU ribosomal protein S1p [Bacillus cereus F837/76]
 gi|384385153|gb|AFH82814.1| 30S ribosomal protein S1 [Bacillus anthracis str. H9401]
 gi|401186610|gb|EJQ93698.1| ribosomal protein S1 [Bacillus cereus ISP3191]
 gi|403394134|gb|EJY91375.1| 30S ribosomal protein S1 [Bacillus anthracis str. BF1]
          Length = 382

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVG 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEVKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 56.6 bits (135), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354


>gi|423647524|ref|ZP_17623094.1| ribosomal protein S1 [Bacillus cereus VD169]
 gi|401285478|gb|EJR91317.1| ribosomal protein S1 [Bacillus cereus VD169]
          Length = 382

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 176/398 (44%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R           
Sbjct: 119  VVDLGVRGFVPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDREKNRVI----- 164

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
                   +S     +L  D     K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 165  -------LSHKAVVELELD----SKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365


>gi|228938709|ref|ZP_04101313.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
            ATCC 10792]
 gi|228971591|ref|ZP_04132214.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228978201|ref|ZP_04138578.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|384185506|ref|YP_005571402.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar chinensis
            CT-43]
 gi|410673799|ref|YP_006926170.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|423382992|ref|ZP_17360248.1| ribosomal protein S1 [Bacillus cereus BAG1X1-2]
 gi|423530548|ref|ZP_17506993.1| ribosomal protein S1 [Bacillus cereus HuB1-1]
 gi|452197822|ref|YP_007477903.1| SSU ribosomal protein S1p [Bacillus thuringiensis serovar
            thuringiensis str. IS5056]
 gi|228781218|gb|EEM29419.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|228788114|gb|EEM36070.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228820950|gb|EEM66971.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
            ATCC 10792]
 gi|326939215|gb|AEA15111.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar chinensis
            CT-43]
 gi|401643852|gb|EJS61546.1| ribosomal protein S1 [Bacillus cereus BAG1X1-2]
 gi|402447063|gb|EJV78921.1| ribosomal protein S1 [Bacillus cereus HuB1-1]
 gi|409172928|gb|AFV17233.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
 gi|452103215|gb|AGG00155.1| SSU ribosomal protein S1p [Bacillus thuringiensis serovar
            thuringiensis str. IS5056]
          Length = 382

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 172/383 (44%), Gaps = 53/383 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R           
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDREKNRVI----- 164

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
                   +S     +L  D     K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 165  -------LSHKAVVELELD----SKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKND 1535
            +L+V   ++RISL +K +  +N+
Sbjct: 328  VLEVHVAEKRISLSIKEALEENN 350


>gi|374339665|ref|YP_005096401.1| 30S ribosomal protein S1 [Marinitoga piezophila KA3]
 gi|372101199|gb|AEX85103.1| ribosomal protein S1 [Marinitoga piezophila KA3]
          Length = 519

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 170/387 (43%), Gaps = 31/387 (8%)

Query: 457 YKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIV 516
           YK+G  ++V++L     EG A G  KA+  + ++    ++  G VVKGK+      G IV
Sbjct: 63  YKKGEKIKVKLLKINDAEGQAFGSEKAAKKDEII---DEIVEGKVVKGKIKERVEKGYIV 119

Query: 517 QFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 576
           +    V+A  P        ++ P + F    E+ F V+  + +R     +  +V S+  +
Sbjct: 120 ELENVVRAFLP----GSLAMLNPNEPFP-REEMDFLVIKREERR----RRLNIVVSRKGL 170

Query: 577 LSSYAEA---TDRL--ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
           +  Y E    T  L  +  G +T I++ G F+     +    P+SE+  D   + + MY 
Sbjct: 171 VDKYIEEFFNTHNLNTLVEGVVTGIKEFGLFISLNPYITALVPKSEISWDKKVDINEMYK 230

Query: 632 VGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVY 688
           +G  VK  I+     +R+I++S       P    E D   + S+V G V  + P     +
Sbjct: 231 IGDKVKGIIIKLDKENRKISVSVKRLKDDPWETVEKDY-PVDSIVEGEVIEIFP-----F 284

Query: 689 VIAKGYSKGTIPTEHLADHLEHAT-VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLI 746
             A    +G     H ++        ++ V+  G +   ++L +D +   + LS K  L 
Sbjct: 285 GFAVKLGEGIEGLVHESEIFWSGKRKIEDVVSVGDKVKVKVLSIDKDKKKITLSYKQVLG 344

Query: 747 NSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTY 806
           +  + +      +H   +V G V  I+  G  ++    LTGF+  S+       ++   +
Sbjct: 345 DPWKDID---EKLHEGDIVDGVVEKILPNGLIIKLDNELTGFSHVSELSWNFVDNVEDLF 401

Query: 807 YVGQSVRSNILDVNSETGRITLSLKQS 833
             G  V+  +L V+ E  +I LS+KQ+
Sbjct: 402 KEGDKVKVKVLHVDKENRKIKLSVKQA 428



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 180/392 (45%), Gaps = 66/392 (16%)

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVD--ISNDNMQTFIHEGDIVGGRISKILSGVG--G 1276
            L I +E++  RL +   + G+ DK ++   +  N+ T + EG         +++G+   G
Sbjct: 150  LVIKREERRRRLNIVVSRKGLVDKYIEEFFNTHNLNTLV-EG---------VVTGIKEFG 199

Query: 1277 LVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            L + + P++   V  +E+      D    Y  G  VK  ++++ +  R    + +S++  
Sbjct: 200  LFISLNPYITALVPKSEISWDKKVDINEMYKIGDKVKGIIIKLDKENR---KISVSVKRL 256

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
             D                P + +EK  D   + IV+G V  +   G  + L   ++  V 
Sbjct: 257  KD---------------DPWETVEK--DYPVDSIVEGEVIEIFPFGFAVKLGEGIEGLVH 299

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH 1456
             S +        E    +G  V  +VLS++   K++  TL           +I+    LH
Sbjct: 300  ESEIFWSGKRKIEDVVSVGDKVKVKVLSIDKDKKKI--TLSYKQVLGDPWKDID--EKLH 355

Query: 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516
             GDIV G ++++   GL I ++N  L G  HVSELS + VDN+E +++ G+KVKVK+L V
Sbjct: 356  EGDIVDGVVEKILPNGLIIKLDN-ELTGFSHVSELSWNFVDNVEDLFKEGDKVKVKVLHV 414

Query: 1517 DKEKRRISLGMKSSY---FKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDM 1573
            DKE R+I L +K +    +K  ++ L+ + +E S + ++ VG                  
Sbjct: 415  DKENRKIKLSVKQAKENPWKKVSNELK-NGDEISGKVVKYVGK----------------- 456

Query: 1574 DMESEDGGSLVLAQIESRASVPPLEVNLDDEQ 1605
                  G  +++ + E  A +P  ++NL++ Q
Sbjct: 457  ------GAVIIVDEYEVEAFIPKSKINLEENQ 482



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
            +G  V   VLSI+K+KK + L    ++  + D   DI        +HEGDIV G + KIL
Sbjct: 317  VGDKVKVKVLSIDKDKKKITL---SYKQVLGDPWKDIDEK-----LHEGDIVDGVVEKIL 368

Query: 1272 SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
                GL++++   L G  H +EL    V +    + EG  VK KVL + +  R    ++L
Sbjct: 369  P--NGLIIKLDNELTGFSHVSELSWNFVDNVEDLFKEGDKVKVKVLHVDKENR---KIKL 423

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGK 1357
            S++ + +      S++L    +  GK
Sbjct: 424  SVKQAKENPWKKVSNELKNGDEISGK 449



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 113/283 (39%), Gaps = 51/283 (18%)

Query: 762  NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
            N++V G V  I E G F+     +T   P+S+    ++ D+++ Y +G  V+  I+ ++ 
Sbjct: 185  NTLVEGVVTGIKEFGLFISLNPYITALVPKSEISWDKKVDINEMYKIGDKVKGIIIKLDK 244

Query: 822  ETGRITLS---LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII--GS 876
            E  +I++S   LK     + +  +  +  +  E I +               GF +  G 
Sbjct: 245  ENRKISVSVKRLKDDPWETVEKDYPVDSIVEGEVIEIFPF------------GFAVKLGE 292

Query: 877  VIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDL 936
             IEG VHES  F                +  +     V  G  ++  +L + K ++ + L
Sbjct: 293  GIEGLVHESEIFW---------------SGKRKIEDVVSVGDKVKVKVLSIDKDKKKITL 337

Query: 937  SLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHS 996
            S K V  D +++ +                 L     V+ +VE +  N L++ L   N  
Sbjct: 338  SYKQVLGDPWKDIDEK---------------LHEGDIVDGVVEKILPNGLIIKLD--NEL 380

Query: 997  IGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRL 1037
             G++ VS+  +N     +  F  G  V   V+ +   +   +L
Sbjct: 381  TGFSHVSELSWNFVDNVEDLFKEGDKVKVKVLHVDKENRKIKL 423


>gi|229084599|ref|ZP_04216869.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44]
 gi|228698749|gb|EEL51464.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44]
          Length = 382

 Score = 84.3 bits (207), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 174/377 (46%), Gaps = 43/377 (11%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
            + +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    V
Sbjct: 15   LQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SDV 61

Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGLV 1278
            + +++  +L  + L      +S + VD       +Q     G++    +  I++G  GLV
Sbjct: 62   VGLDQTLELKVIKLEDDDLVLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNG--GLV 119

Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
            V +G   +      EL  +   +  + Y +G+ +  K++E+ R       V LS ++ ++
Sbjct: 120  VDLGVRGFIPASLVELHYV---EDFTDY-KGKTLAVKIVELDRE---KNRVILSHKAVVE 172

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
                +   D              I  L    +V+G V+ +T  G F+ +   +D  V +S
Sbjct: 173  QELESKKKD-------------AISSLKEGDVVEGTVQRLTDFGAFVNVG-GVDGLVHIS 218

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1458
             +S   VE P      G+ V  +VLSV+  ++R+ +++K +          N  + +  G
Sbjct: 219  QISHDRVEQPADVLTQGQSVKVKVLSVDADTQRISLSIKAAQPGPWE----NVAAEVKPG 274

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
            DI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK+L+V  
Sbjct: 275  DIREGLVKRIVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHA 333

Query: 1519 EKRRISLGMKSSYFKND 1535
             ++RISL +K +  +N+
Sbjct: 334  AEKRISLSIKEAIEENN 350



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 144/350 (41%), Gaps = 35/350 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G VV G V  V+    +V        + P+  ++   I K      +   L  +V+ ++ 
Sbjct: 18  GDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVGLDQTLELKVIKLED 77

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
             + ++  K  V ++ A +    + T   +    +  I   G  V    GV+GF P S +
Sbjct: 78  DDLVLS--KRAVDAEKAWVELQEKFTSGEVFDVTVKDIVNGGLVVDL--GVRGFIPASLV 133

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----------VK 668
            L    E  + Y  G+ +  +I+       R+ LS       V E +L          +K
Sbjct: 134 ELHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSH----KAVVEQELESKKKDAISSLK 187

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +V G V  +T     V V   G   G +    ++ D +E       V+  G     +
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNV---GGVDGLVHISQISHDRVEQPA---DVLTQGQSVKVK 241

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
           +L +D ++  + LS     I +AQ  P +  A+ + P  +  G V  I+  G FV  L  
Sbjct: 242 VLSVDADTQRISLS-----IKAAQPGPWENVAAEVKPGDIREGLVKRIVTFGAFVEILPG 296

Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           + G    S+  +    + ++   +GQ V+  +L+V++   RI+LS+K++ 
Sbjct: 297 VEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAI 346



 Score = 41.2 bits (95), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           V IS ++ + V +      +G  V+V++L         +  +KA+         ++VKPG
Sbjct: 215 VHISQISHDRVEQPADVLTQGQSVKVKVLSVDADTQRISLSIKAAQPGPWENVAAEVKPG 274

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS- 558
            + +G V  + +FGA V+   GV+ L  +  ++   +  P +  ++G E+  +VL V + 
Sbjct: 275 DIREGLVKRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHAA 334

Query: 559 -KRITVTHKKTL 569
            KRI+++ K+ +
Sbjct: 335 EKRISLSIKEAI 346


>gi|46581552|ref|YP_012360.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601286|ref|YP_965686.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris DP4]
 gi|387154752|ref|YP_005703688.1| 30S ribosomal protein S1 [Desulfovibrio vulgaris RCH1]
 gi|46450974|gb|AAS97620.1| ribosomal protein S1 [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561515|gb|ABM27259.1| SSU ribosomal protein S1P [Desulfovibrio vulgaris DP4]
 gi|311235196|gb|ADP88050.1| ribosomal protein S1 [Desulfovibrio vulgaris RCH1]
          Length = 577

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 153/349 (43%), Gaps = 34/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G VVKGK   +  +G  V   GG+  L  +  MS   I  P +   +G EL  +VL    
Sbjct: 208 GQVVKGKAKNITEYGVFVDL-GGLDGLLHITDMSWKRIRHPKELVSLGQELELKVLSFDR 266

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
            S+++++  K+ +      I + + E    L   G +T +  +G FV    GV+G    S
Sbjct: 267 DSQKVSLGMKQLVADPWQDITAKFPEG---LRGQGKVTNLVDYGAFVELEPGVEGLVHIS 323

Query: 617 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL----GS 671
           E+        PS M  VG  V+  I+   P  +RI+L   MK  + +  ++V      G+
Sbjct: 324 EMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLG--MKQVKPNPWEVVAEKYPEGT 381

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD------ 725
           ++ GV+  +T   + +     G   G     H++D     +  K +  P   +       
Sbjct: 382 ILEGVIKNITEFGMFI-----GIEDGIDGLIHVSD----ISWTKKIRHPNEMYKVGDVVQ 432

Query: 726 -QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLG 783
            ++L +D E+    L  K    +   ++P+     +P  ++V G V NI + G FV    
Sbjct: 433 AKVLTVDQENEKFTLGVKQLAEDPWSRVPA----TYPVGTLVTGSVTNITDFGLFVEVEE 488

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            + G    S+    +    S+ Y  GQ +++ ++ V++E  R+ LS+KQ
Sbjct: 489 GIEGLVHVSEISQKKIKSPSEIYKEGQEIQAKVIHVSAEERRLGLSIKQ 537



 Score = 77.4 bits (189), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 90/160 (56%), Gaps = 6/160 (3%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPL 1428
            I++G +KN+T  G FI +   +D  + +S++S    +  P + + +G +V  +VL+V+  
Sbjct: 382  ILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNEMYKVGDVVQAKVLTVDQE 441

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
            +++  + +K       S+      +   VG +V G +  +  +GLF+ +E   + GL HV
Sbjct: 442  NEKFTLGVKQLAEDPWSRVP----ATYPVGTLVTGSVTNITDFGLFVEVEE-GIEGLVHV 496

Query: 1489 SELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            SE+S+  + +   IY+ G++++ K++ V  E+RR+ L +K
Sbjct: 497  SEISQKKIKSPSEIYKEGQEIQAKVIHVSAEERRLGLSIK 536



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 7/165 (4%)

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            L    +V+G  KN+T  G F+ L   LD  + ++++S   +  P++   +G+ +  +VLS
Sbjct: 205  LEEGQVVKGKAKNITEYGVFVDLG-GLDGLLHITDMSWKRIRHPKELVSLGQELELKVLS 263

Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1484
             +  S++V + +K    +  +    +  +    G    G++  +  YG F+ +E   + G
Sbjct: 264  FDRDSQKVSLGMK----QLVADPWQDITAKFPEGLRGQGKVTNLVDYGAFVELE-PGVEG 318

Query: 1485 LCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            L H+SE+S    + +   + R G++V+V IL VD +K+RISLGMK
Sbjct: 319  LVHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLGMK 363



 Score = 49.3 bits (116), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
            L  L  G +V G+ K +  YG+F+ +    L GL H++++S   + + + +   G+++++
Sbjct: 202  LRTLEEGQVVKGKAKNITEYGVFVDL--GGLDGLLHITDMSWKRIRHPKELVSLGQELEL 259

Query: 1512 KILKVDKEKRRISLGMK 1528
            K+L  D++ +++SLGMK
Sbjct: 260  KVLSFDRDSQKVSLGMK 276


>gi|218234210|ref|YP_002366278.1| 30S ribosomal protein S1 [Bacillus cereus B4264]
 gi|228920308|ref|ZP_04083655.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|228957873|ref|ZP_04119613.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
            str. T13001]
 gi|229043342|ref|ZP_04191060.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
 gi|229069150|ref|ZP_04202441.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
 gi|229078780|ref|ZP_04211333.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
 gi|229109053|ref|ZP_04238653.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
 gi|229144196|ref|ZP_04272610.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
 gi|229149795|ref|ZP_04278024.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
 gi|229178005|ref|ZP_04305377.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
 gi|365162295|ref|ZP_09358425.1| ribosomal protein S1 [Bacillus sp. 7_6_55CFAA_CT2]
 gi|423414716|ref|ZP_17391836.1| ribosomal protein S1 [Bacillus cereus BAG3O-2]
 gi|423423673|ref|ZP_17400704.1| ribosomal protein S1 [Bacillus cereus BAG3X2-2]
 gi|423429502|ref|ZP_17406506.1| ribosomal protein S1 [Bacillus cereus BAG4O-1]
 gi|423435084|ref|ZP_17412065.1| ribosomal protein S1 [Bacillus cereus BAG4X12-1]
 gi|423579790|ref|ZP_17555901.1| ribosomal protein S1 [Bacillus cereus VD014]
 gi|423588020|ref|ZP_17564107.1| ribosomal protein S1 [Bacillus cereus VD045]
 gi|423629542|ref|ZP_17605290.1| ribosomal protein S1 [Bacillus cereus VD154]
 gi|423643358|ref|ZP_17618976.1| ribosomal protein S1 [Bacillus cereus VD166]
 gi|423654378|ref|ZP_17629677.1| ribosomal protein S1 [Bacillus cereus VD200]
 gi|218162167|gb|ACK62159.1| ribosomal protein S1 [Bacillus cereus B4264]
 gi|228605493|gb|EEK62942.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
 gi|228633659|gb|EEK90259.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
 gi|228639204|gb|EEK95620.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
 gi|228674331|gb|EEL29575.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
 gi|228704462|gb|EEL56895.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
 gi|228713902|gb|EEL65786.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
 gi|228725990|gb|EEL77229.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
 gi|228801789|gb|EEM48666.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
            str. T13001]
 gi|228839331|gb|EEM84625.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|363618608|gb|EHL69952.1| ribosomal protein S1 [Bacillus sp. 7_6_55CFAA_CT2]
 gi|401097636|gb|EJQ05658.1| ribosomal protein S1 [Bacillus cereus BAG3O-2]
 gi|401115363|gb|EJQ23216.1| ribosomal protein S1 [Bacillus cereus BAG3X2-2]
 gi|401121808|gb|EJQ29597.1| ribosomal protein S1 [Bacillus cereus BAG4O-1]
 gi|401125322|gb|EJQ33082.1| ribosomal protein S1 [Bacillus cereus BAG4X12-1]
 gi|401217245|gb|EJR23939.1| ribosomal protein S1 [Bacillus cereus VD014]
 gi|401227757|gb|EJR34286.1| ribosomal protein S1 [Bacillus cereus VD045]
 gi|401267409|gb|EJR73469.1| ribosomal protein S1 [Bacillus cereus VD154]
 gi|401275362|gb|EJR81329.1| ribosomal protein S1 [Bacillus cereus VD166]
 gi|401295889|gb|EJS01512.1| ribosomal protein S1 [Bacillus cereus VD200]
          Length = 382

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 180/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365


>gi|217959075|ref|YP_002337623.1| 30S ribosomal protein S1 [Bacillus cereus AH187]
 gi|229138291|ref|ZP_04266886.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26]
 gi|375283572|ref|YP_005104010.1| 30S ribosomal protein S1 [Bacillus cereus NC7401]
 gi|423353921|ref|ZP_17331547.1| ribosomal protein S1 [Bacillus cereus IS075]
 gi|423569488|ref|ZP_17545734.1| ribosomal protein S1 [Bacillus cereus MSX-A12]
 gi|217064831|gb|ACJ79081.1| ribosomal protein S1 [Bacillus cereus AH187]
 gi|228645183|gb|EEL01420.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26]
 gi|358352098|dbj|BAL17270.1| ribosomal protein S1 [Bacillus cereus NC7401]
 gi|401088267|gb|EJP96458.1| ribosomal protein S1 [Bacillus cereus IS075]
 gi|401206476|gb|EJR13267.1| ribosomal protein S1 [Bacillus cereus MSX-A12]
          Length = 382

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVG 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEVKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 56.6 bits (135), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354


>gi|254391555|ref|ZP_05006755.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
 gi|294812024|ref|ZP_06770667.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
 gi|326440254|ref|ZP_08214988.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
 gi|197705242|gb|EDY51054.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
 gi|294324623|gb|EFG06266.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
          Length = 496

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 38   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VKVGDEIEAL 91

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 92   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 142

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 143  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 195

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 196  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 240

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 241  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 295

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ ++   + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 296  GQVVPGKVTKLVPFGAFVRVDE-GIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 354

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 355  LERRRISLSLKQA 367



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 38  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 264 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 320

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 321 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 370


>gi|398786835|ref|ZP_10549439.1| 30S ribosomal protein S1 [Streptomyces auratus AGR0001]
 gi|396993390|gb|EJJ04461.1| 30S ribosomal protein S1 [Streptomyces auratus AGR0001]
          Length = 506

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 185/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 14   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 73

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 74   KHDVDPNEV------VAVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 120

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 121  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LEA 174

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 175  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 217

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 218  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 276

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   + GL H+SEL+
Sbjct: 277  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-GIEGLVHISELA 330

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 331  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371


>gi|228984676|ref|ZP_04144849.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar tochigiensis
            BGSC 4Y1]
 gi|228775070|gb|EEM23463.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar tochigiensis
            BGSC 4Y1]
          Length = 382

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 172/383 (44%), Gaps = 53/383 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R           
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDREKNRVI----- 164

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
                   +S     +L  D     K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 165  -------LSHKAVVELELD----SKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKND 1535
            +L+V   ++RISL +K +  +N+
Sbjct: 328  VLEVHVAEKRISLSIKEALEENN 350


>gi|229155163|ref|ZP_04283275.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
 gi|228628290|gb|EEK85005.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
          Length = 382

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 176/398 (44%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R           
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDREKNRVI----- 164

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
                   +S     +L  D     K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 165  -------LSHKAVVELELD----SKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 40.4 bits (93), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 29/356 (8%)

Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
           V    +++ G VV G V  V+    +V        + P+  ++   I K     ++   L
Sbjct: 9   VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTL 68

Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
             +V+ ++   + ++  K  V ++ A +    + T   +    +  I   G  V    GV
Sbjct: 69  ELKVIKLEEDDLVLS--KRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 663
           +GF P S + +    E  + Y  G+ +  +I+       R+ LS        +   +   
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 721
              +K G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 778
            +   ++L +D ++  + LS     I +AQ  P +  A  I    +  G V  ++  G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGAF 290

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
           V  L  + G    S+  +    + ++   +GQ V+  +L+V+    RI+LS+K++ 
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKVKVLEVHVAEKRISLSIKEAL 346


>gi|297198957|ref|ZP_06916354.1| ribosomal protein S1 [Streptomyces sviceus ATCC 29083]
 gi|197711117|gb|EDY55151.1| ribosomal protein S1 [Streptomyces sviceus ATCC 29083]
          Length = 503

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VAVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ ++   + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRVDE-GIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 368



 Score = 45.4 bits (106), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 128/290 (44%), Gaps = 37/290 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQI--GQVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++    S
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANEAFGS 374


>gi|402815226|ref|ZP_10864819.1| putative 30S ribosomal protein S1 [Paenibacillus alvei DSM 29]
 gi|402507597|gb|EJW18119.1| putative 30S ribosomal protein S1 [Paenibacillus alvei DSM 29]
          Length = 404

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 174/383 (45%), Gaps = 69/383 (18%)

Query: 1164 GQRVTGYVYKVDNEWALLTIS---------RHLKAQLFILDSAYEPSELQEFQRRFHIGK 1214
            G  V G + K+D+  A+++I          R L A    +D+A +  E         +G+
Sbjct: 28   GDTVKGTIVKIDDNQAVVSIGYKYDGIIPVRELTA--VSVDNAADVVE---------VGQ 76

Query: 1215 AVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILS 1272
             V   V+SI+ EK+  RLVL       S + VD     D+MQ      D+    ++ ++ 
Sbjct: 77   EVECKVVSIDDEKE--RLVL-------SKRQVDSEQAWDDMQKHFEAQDVFEVTVADVVK 127

Query: 1273 GVGGLVVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
            G  G+V  +G     P      HF E          S Y +G+ ++ KV EI R      
Sbjct: 128  G--GVVADVGVRAFIPASMVERHFVE--------DFSDY-KGRTLRVKVKEIDRENNKLI 176

Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
               LS +  L+     N              +  +E L+    ++G V+ +T  G F+ +
Sbjct: 177  ---LSQKDVLEAEFEANK-------------IRVMEGLTEGQELEGTVQRLTQFGAFVDV 220

Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
               +D  V +S L+  +VE P      G+ V  +VL V+P + ++ +++K +      Q+
Sbjct: 221  G-GVDGLVHVSELAWNHVEKPSDVVSEGQKVKVKVLKVDPANGKISLSIKATQPGPWEQA 279

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
                 SN+  GDI+ G++KR+  +G F+ +    + GL H+S+++  HV     + + G+
Sbjct: 280  S----SNIKTGDILTGEVKRLVDFGAFVEVA-PGVEGLVHISQIAHRHVATPYEVLKQGQ 334

Query: 1508 KVKVKILKVDKEKRRISLGMKSS 1530
             V+VK+L     ++R+SL +K +
Sbjct: 335  TVQVKVLDFSPAEKRVSLSIKET 357



 Score = 48.5 bits (114), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 1441 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
            + TASQ  + N+ +L  GD V G I +++     ++I      G+  V EL+   VDN  
Sbjct: 11   AETASQEALENIVSLKKGDTVKGTIVKIDDNQAVVSI-GYKYDGIIPVRELTAVSVDNAA 69

Query: 1501 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
             +   G++V+ K++ +D EK R+ L  +    +   D++Q
Sbjct: 70   DVVEVGQEVECKVVSIDDEKERLVLSKRQVDSEQAWDDMQ 109


>gi|254723673|ref|ZP_05185459.1| 30S ribosomal protein S1 [Bacillus anthracis str. A1055]
          Length = 382

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q   + G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVG 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEVKAGDIREGVVKRLVTFGAFVEI-LLGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILLGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354


>gi|357388961|ref|YP_004903800.1| 30S ribosomal protein S1 [Kitasatospora setae KM-6054]
 gi|311895436|dbj|BAJ27844.1| putative ribosomal protein S1 [Kitasatospora setae KM-6054]
          Length = 496

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 172/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P E+        +G  +   
Sbjct: 40   GDIVEGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEV------VKVGDEIEAL 93

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 94   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 144

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 145  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 197

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 198  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 242

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 243  ELSWKHIDHPNEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 297

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
              +V G++ ++  +G F+ ++   + GL H+SEL+E HV+  E + + G+++ VK++ +D
Sbjct: 298  SQVVPGKVTKLVPFGAFVRVDE-GIEGLVHISELAERHVEIPEQVVQVGDEIFVKVIDID 356

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 357  LERRRISLSLKQA 369



 Score = 55.5 bits (132), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 153/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 40  GDIVEGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPHEVVKVGDEIEALVLQKED 99

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 100 KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 155

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 156 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 211

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H      V++ G E   +
Sbjct: 212 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPN---EVVEVGQEVTVE 265

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A     + VV G V  ++  G FVR    + 
Sbjct: 266 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQISQVVPGKVTKLVPFGAFVRVDEGIE 322

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   VG  +   ++D++ E  RI+LSLKQ+  S
Sbjct: 323 GLVHISELAERHVEIPEQVVQVGDEIFVKVIDIDLERRRISLSLKQANES 372


>gi|405979804|ref|ZP_11038145.1| 30S ribosomal protein S1 [Actinomyces turicensis ACS-279-V-Col4]
 gi|404391179|gb|EJZ86243.1| 30S ribosomal protein S1 [Actinomyces turicensis ACS-279-V-Col4]
          Length = 481

 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 182/400 (45%), Gaps = 45/400 (11%)

Query: 1138 LSIKPSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLKAQL 1191
            ++     + V++IGS + L    D +I     G  V G V KVD++  LL I    K + 
Sbjct: 1    MTTNTPQVAVNDIGSTEDLLAAIDATIKYFNDGDIVEGTVVKVDHDEVLLDIG--YKTEG 58

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
             IL                 +G  +   VL   KE K  RL+L   +        + +  
Sbjct: 59   VILSRELSIKHDVNPDDVVAVGDKIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 111

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 112  QIEKVKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLAPYIGRE---- 165

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   ++              +  L    + 
Sbjct: 166  IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRTNF-------------LHTLGKGQVR 209

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +R
Sbjct: 210  TGNVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRER 268

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SE
Sbjct: 269  VSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISE 322

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L++ HV+  + + + G+   VK++ +D E+RRISL +K +
Sbjct: 323  LAQRHVELPDQVVKVGDDAFVKVIDIDLERRRISLSLKQA 362



 Score = 56.6 bits (135), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
           F H+ +  G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+ 
Sbjct: 199 FLHT-LGKGQVRTGNVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVT 256

Query: 551 FRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
             VL V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G
Sbjct: 257 VEVLDVDMDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDG 313

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           ++G    SEL       P  +  VG     +++      RRI+LS 
Sbjct: 314 IEGLVHISELAQRHVELPDQVVKVGDDAFVKVIDIDLERRRISLSL 359



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 148/380 (38%), Gaps = 56/380 (14%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI ++     D  I  G + K++     +      +G     EL +     P  +  VG 
Sbjct: 22  AIDATIKYFNDGDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDVVAVGD 81

Query: 635 VVKCRIMSSIPASRRINLS--------FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 686
            ++  ++       R+ LS           +  +V E+D      +V+G V  V    ++
Sbjct: 82  KIEALVLQKEDKEGRLLLSKKRAQYERAWGQIEKVKEED-----GVVTGTVIEVVKGGLI 136

Query: 687 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSL 745
           + +  +G+    +P    A  +E   V       G E + +++ LD   +N++LS +  L
Sbjct: 137 LDIGLRGF----LP----ASLVEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWL 188

Query: 746 INSAQQLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804
             +  ++ ++  H +    V  G V +I+  G FV  LG + G    S+         S+
Sbjct: 189 EQTQSEVRTNFLHTLGKGQVRTGNVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSE 247

Query: 805 TYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGS 864
              VGQ V   +LDV+ +  R++LSLK +      A F + H                  
Sbjct: 248 VVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQA-FARTH------------------ 288

Query: 865 ELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSV 919
                    IG V+ GKV +   FG  V  E+  +    I+     H +L    V+ G  
Sbjct: 289 --------AIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGDD 340

Query: 920 IQAAILDVAKAERLVDLSLK 939
               ++D+    R + LSLK
Sbjct: 341 AFVKVIDIDLERRRISLSLK 360



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 129/293 (44%), Gaps = 37/293 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + KV  E  ++T  +   +K  L ILD     + P+ L E +R      +IG+ 
Sbjct: 107  ERAWGQIEKVKEEDGVVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLAPYIGRE 165

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +   +     ++  + + T + +G +  G +S I++   
Sbjct: 166  IEAKIIELDKNRNNVVLSRRAW---LEQTQSEVRTNFLHT-LGKGQVRTGNVSSIVNF-- 219

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 220  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 275

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 276  TQE---------------DPWQAFARTHAIG--QVVPGKVTKLVPFGAFVRVEDGIEGLV 318

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSE 1448
             +S L+  +VE P++   +G     +V+ ++   +R+ ++LK ++      SE
Sbjct: 319  HISELAQRHVELPDQVVKVGDDAFVKVIDIDLERRRISLSLKQANEGIDPTSE 371


>gi|229160548|ref|ZP_04288543.1| 30S ribosomal protein S1 [Bacillus cereus R309803]
 gi|228622958|gb|EEK79789.1| 30S ribosomal protein S1 [Bacillus cereus R309803]
          Length = 382

 Score = 84.0 bits (206), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 179/398 (44%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +N+  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELNQTLELKIIKLEEDDLVLSKRAVDAEKAWIELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++V VK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVTVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALDENNVTEDYSQYEPNADSA 365


>gi|403511314|ref|YP_006642952.1| S1 RNA binding domain protein [Nocardiopsis alba ATCC BAA-2165]
 gi|402802540|gb|AFR09950.1| S1 RNA binding domain protein [Nocardiopsis alba ATCC BAA-2165]
          Length = 497

 Score = 84.0 bits (206), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 186/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 13   VAVNDIGSEEAFLAAIDETIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 72

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 73   KHDVDPGEV------VAVGDQVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 119

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 120  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEA 173

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+    T S    T ++T          L    I +G 
Sbjct: 174  KIIELDKNRN---NVVLSRRAWLE---QTQSEVRQTFLNT----------LQKGQIRKGV 217

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 218  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSL 276

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      Q      +  H +G +V G++ ++  +G F+ +E   + GL H+SEL+E
Sbjct: 277  SLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAE 330

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E + + G ++ VKI+ +D ++RRISL +K +
Sbjct: 331  RHVEVPEQVVQVGTEIFVKIIDIDLDRRRISLSLKQA 367



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 152/347 (43%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG ++   VL  + 
Sbjct: 38  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDQVEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 154 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQ 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 264 VLDVDMERERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVEEGIE 320

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   VG  +   I+D++ +  RI+LSLKQ+
Sbjct: 321 GLVHISELAERHVEVPEQVVQVGTEIFVKIIDIDLDRRRISLSLKQA 367


>gi|389865030|ref|YP_006367271.1| 30S ribosomal protein S1 [Modestobacter marinus]
 gi|388487234|emb|CCH88792.1| 30S ribosomal protein S1 [Modestobacter marinus]
          Length = 489

 Score = 84.0 bits (206), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 128/257 (49%), Gaps = 28/257 (10%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL++ IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R
Sbjct: 139  GGLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRR 191

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
              L+   S   S+              +  L+   +  G V ++ + G F+ L   +D  
Sbjct: 192  QWLEQTQSEVRSEF-------------LNKLAKGQVRTGVVSSIVNFGAFVDLG-GVDGL 237

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      + 
Sbjct: 238  VHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FAR 292

Query: 1455 LH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             H +G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + + G+++ VK+
Sbjct: 293  THQIGQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVGDEILVKV 351

Query: 1514 LKVDKEKRRISLGMKSS 1530
            + +D ++RRISL +K +
Sbjct: 352  IDIDLDRRRISLSLKQA 368



 Score = 44.7 bits (104), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 151/347 (43%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 39  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPTEVVKVGDEVEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  EA + ++    + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEAKKEADEVVVGT--VIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRQWLEQTQSEVRSEFLNKLA 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  +Q    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDLDRERVSLSLKATQEDPWRQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEILVKVIDIDLDRRRISLSLKQA 368


>gi|430743122|ref|YP_007202251.1| 30S ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
 gi|430014842|gb|AGA26556.1| ribosomal protein S1 [Singulisphaera acidiphila DSM 18658]
          Length = 632

 Score = 84.0 bits (206), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 100/167 (59%), Gaps = 5/167 (2%)

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSV 1425
            P  +++G V+N+T+ G FI +   +D  + +S++S    +  P +    G+ ++ +VL+V
Sbjct: 381  PGTMIEGTVRNLTNYGAFIEIEEGIDGLLHISDMSWTRKIGHPNELLEKGQRLSCQVLNV 440

Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
            +   KR+ + LK        +++I N       D+V G++ ++ ++G+F+ +E   L GL
Sbjct: 441  DQERKRIALGLKQL-REDPWETDIPN--RYEPNDVVKGKVTKLTNFGVFVELE-PGLEGL 496

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532
             H+SEL++  VD+ E + + G+ ++VKIL+VD+ +R+I L  K +++
Sbjct: 497  LHISELADHKVDSPEEVVKVGDDIEVKILRVDRGERKIGLSRKKAHW 543



 Score = 81.6 bits (200), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 138/276 (50%), Gaps = 33/276 (11%)

Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP--LSGYDEGQFVKCK 1315
            HEGD+V G++++ +   GGL+V IG ++     F     + +  P  ++ Y + + ++C 
Sbjct: 122  HEGDVVKGKVTRKIK--GGLLVDIGVNV-----FLPASQVDIRRPSDIADYIDSE-IECM 173

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I     G  ++ +S R  ++         L             + ++ P  +  G V
Sbjct: 174  ILKID---EGRRNIVVSRRKLIEITREQQKKQL-------------LAEIEPGQVRMGTV 217

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+   G F+ L   +D  + ++++S G +  P     I   +   VL V+   +++ + 
Sbjct: 218  KNIADFGAFVDLG-GIDGLLHITDMSWGRINHPSDMVKIDDQIEVMVLHVDKDREKIALG 276

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-ED 1494
            LK    ++AS  E N      VG  V+G++  V SYG F+ +E   + GL H+SE+S   
Sbjct: 277  LK---QKSASPWE-NVADKYPVGTRVMGEVVNVMSYGAFVKLEE-GIEGLVHISEMSWTK 331

Query: 1495 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             +++   + +  +K++V +L ++KEK+ ISLGMK +
Sbjct: 332  RINHPSELVQISDKIEVVVLGINKEKQEISLGMKQT 367



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 175/461 (37%), Gaps = 66/461 (14%)

Query: 408 GDIYDQSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGS 461
           GD+  + KV R  +G GLL+DI      P++ V       I+D  + E+  +  K  EG 
Sbjct: 124 GDVV-KGKVTRKIKG-GLLVDIGVNVFLPASQVDIRRPSDIADYIDSEIECMILKIDEGR 181

Query: 462 CVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGG 521
             R  ++  R L  +     K           ++++PG V  G V  +  FGA V   GG
Sbjct: 182 --RNIVVSRRKLIEITREQQKKQLL-------AEIEPGQVRMGTVKNIADFGAFVDL-GG 231

Query: 522 VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLVKSKLAILSS 579
           +  L  +  MS   I  P    K+  ++   VL V   R  I +  K+        +   
Sbjct: 232 IDGLLHITDMSWGRINHPSDMVKIDDQIEVMVLHVDKDREKIALGLKQKSASPWENVADK 291

Query: 580 YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC-EPSSMYHVGQVVKC 638
           Y   T  +   G +  +  +G FV+   G++G    SE+        PS +  +   ++ 
Sbjct: 292 YPVGTRVM---GEVVNVMSYGAFVKLEEGIEGLVHISEMSWTKRINHPSELVQISDKIEV 348

Query: 639 RIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSGVVDVVTPNAVVVYVIAKGY 694
            ++      + I+L   MK T+ +  D V      G+++ G V  +T     + +     
Sbjct: 349 VVLGINKEKQEISLG--MKQTQTNPWDQVAGKYPPGTMIEGTVRNLTNYGAFIEI----- 401

Query: 695 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD----------QLLVLDNESSNLLLSAKYS 744
                  E   D L H + M    K G+  +          Q+L +D E   + L  K  
Sbjct: 402 -------EEGIDGLLHISDMSWTRKIGHPNELLEKGQRLSCQVLNVDQERKRIALGLK-- 452

Query: 745 LINSAQQLPSDA------SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
                 QL  D       +   PN VV G V  +   G FV     L G    S+  D +
Sbjct: 453 ------QLREDPWETDIPNRYEPNDVVKGKVTKLTNFGVFVELEPGLEGLLHISELADHK 506

Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
                +   VG  +   IL V+    +I LS K++  +  D
Sbjct: 507 VDSPEEVVKVGDDIEVKILRVDRGERKIGLSRKKAHWTKGD 547



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 107/478 (22%), Positives = 187/478 (39%), Gaps = 99/478 (20%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFK-VGAELVFRVLGVK 557
           G VVKGKV      G +V    GV    P    S+ +I +P      + +E+   +L + 
Sbjct: 124 GDVVKGKVTRKIKGGLLVDI--GVNVFLP---ASQVDIRRPSDIADYIDSEIECMILKID 178

Query: 558 SKR--ITVTHKK----TLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
             R  I V+ +K    T  + K  +L+       R+   G +  I   G FV    G+ G
Sbjct: 179 EGRRNIVVSRRKLIEITREQQKKQLLAEIEPGQVRM---GTVKNIADFGAFVDL-GGIDG 234

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED--DLVKL 669
               +++       PS M  +   ++  ++       +I L    K     E+  D   +
Sbjct: 235 LLHITDMSWGRINHPSDMVKIDDQIEVMVLHVDKDREKIALGLKQKSASPWENVADKYPV 294

Query: 670 GSLVSG-VVDVVTPNAVV---------VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
           G+ V G VV+V++  A V         V++    ++K      H ++ ++ +  ++ V+ 
Sbjct: 295 GTRVMGEVVNVMSYGAFVKLEEGIEGLVHISEMSWTK---RINHPSELVQISDKIEVVV- 350

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
                   L ++ E   + L  K +  N   Q+   A    P +++ G V N+   G F+
Sbjct: 351 --------LGINKEKQEISLGMKQTQTNPWDQV---AGKYPPGTMIEGTVRNLTNYGAFI 399

Query: 780 RFLGRLTGFAPRSKAVDG--QRADLSKTYYVG---------QSVRSNILDVNSETGRITL 828
                        + +DG    +D+S T  +G         Q +   +L+V+ E  RI L
Sbjct: 400 EI----------EEGIDGLLHISDMSWTRKIGHPNELLEKGQRLSCQVLNVDQERKRIAL 449

Query: 829 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 888
            LKQ               L E+       +++  ++           V++GKV +  +F
Sbjct: 450 GLKQ---------------LREDPWETDIPNRYEPND-----------VVKGKVTKLTNF 483

Query: 889 GVVVSFEEHSDVYGFITHHQLAGATVES-------GSVIQAAILDVAKAERLVDLSLK 939
           GV V  E    + G +   +LA   V+S       G  I+  IL V + ER + LS K
Sbjct: 484 GVFVELE--PGLEGLLHISELADHKVDSPEEVVKVGDDIEVKILRVDRGERKIGLSRK 539



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 79/143 (55%), Gaps = 15/143 (10%)

Query: 1398 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1457
            S+++D Y++S E E  I K+  GR   V    K +E+T          Q +   L+ +  
Sbjct: 160  SDIAD-YIDS-EIECMILKIDEGRRNIVVSRRKLIEIT--------REQQKKQLLAEIEP 209

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G + +G +K +  +G F+ +   +  GL H++++S   +++   + +  ++++V +L VD
Sbjct: 210  GQVRMGTVKNIADFGAFVDLGGID--GLLHITDMSWGRINHPSDMVKIDDQIEVMVLHVD 267

Query: 1518 KEKRRISLGMK---SSYFKNDAD 1537
            K++ +I+LG+K   +S ++N AD
Sbjct: 268  KDREKIALGLKQKSASPWENVAD 290


>gi|312869066|ref|ZP_07729240.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
 gi|417885402|ref|ZP_12529556.1| 30S ribosomal protein S1 [Lactobacillus oris F0423]
 gi|311095312|gb|EFQ53582.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
 gi|341595324|gb|EGS37973.1| 30S ribosomal protein S1 [Lactobacillus oris F0423]
          Length = 413

 Score = 84.0 bits (206), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 139/283 (49%), Gaps = 36/283 (12%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
            D++Q    +G+ +  ++++ + G  GLVV  G  + G V  + + +  V D L+ + +GQ
Sbjct: 107  DDIQKKFDDGETITAKVTQAVKG--GLVVDAG--VRGFVPASMITDHYVED-LNQF-KGQ 160

Query: 1311 FVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE----DLS 1366
             ++ K++EI                      S N   LS       +H +  E    +L 
Sbjct: 161  ELEFKIIEIE--------------------PSENRLILSHKEIVKAEHEQAAEKIFAELQ 200

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
            P  +V+G V  +T+ G F+ L   +D  V +S +S  +V+ P      G+ V  +VLSV+
Sbjct: 201  PGDVVEGKVARMTNFGAFVDLG-GVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSVD 259

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1486
            P  +R+ +++K +        E         G  + G +KR+ S+G F+ +    + GL 
Sbjct: 260  PDRERISLSIKQTLPGPWDDIE----EKAPAGSTLTGTVKRLTSFGAFVEV-FPGVEGLV 314

Query: 1487 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            H+S++S  H+     + + G++V+VK+L VD E++R+ L MK+
Sbjct: 315  HISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSMKA 357



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V  S ++D YVE    +F  G+ +  +++ +EP   R+ ++ K        Q+     + 
Sbjct: 141  VPASMITDHYVEDL-NQFK-GQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEKIFAE 198

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
            L  GD+V G++ R+ ++G F+ +   +  GL HVSE+S DHVD    +  AG+ VKVK+L
Sbjct: 199  LQPGDVVEGKVARMTNFGAFVDLGGVD--GLVHVSEISYDHVDKPSDVLSAGQDVKVKVL 256

Query: 1515 KVDKEKRRISLGMKSS 1530
             VD ++ RISL +K +
Sbjct: 257  SVDPDRERISLSIKQT 272



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 6/177 (3%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           I+KA   +      ++++PG VV+GKV  + +FGA V   GGV  L  +  +S   + KP
Sbjct: 183 IVKAEHEQAAEKIFAELQPGDVVEGKVARMTNFGAFVDL-GGVDGLVHVSEISYDHVDKP 241

Query: 540 GKKFKVGAELVFRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
                 G ++  +VL V    +RI+++ K+TL       +   A A   L   G + ++ 
Sbjct: 242 SDVLSAGQDVKVKVLSVDPDRERISLSIKQTL-PGPWDDIEEKAPAGSTLT--GTVKRLT 298

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             G FV  + GV+G    S++       P+ +   GQ V+ ++++  P  +R+ LS 
Sbjct: 299 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSM 355



 Score = 55.5 bits (132), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 136/350 (38%), Gaps = 55/350 (15%)

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE---- 663
           GV+G  P  EL   P  + +    VG  +   ++S I  + + N S+++   R+      
Sbjct: 48  GVEGVVPAKELSTKPVEDINDAVKVGDELDLVVISKI-GNDKENGSYLLSHRRLEARKVW 106

Query: 664 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
           DD+ K    G  ++  V       +VV    +G+   ++ T+H  + L            
Sbjct: 107 DDIQKKFDDGETITAKVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK-------- 158

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 778
           G E +  ++    S N L+ +   ++ +  +  ++   + + P  VV G V  +   G F
Sbjct: 159 GQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEKIFAELQPGDVVEGKVARMTNFGAF 218

Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
           V  LG + G    S+         S     GQ V+  +L V+ +  RI+LS+KQ+     
Sbjct: 219 VD-LGGVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSVDPDRERISLSIKQTLPGPW 277

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
           D         +EEK                      GS + G V     FG  V  E   
Sbjct: 278 DD--------IEEKAPA-------------------GSTLTGTVKRLTSFGAFV--EVFP 308

Query: 899 DVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            V G      I+H  +A     ++ G  +Q  +L+V    + + LS+K +
Sbjct: 309 GVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSMKAL 358



 Score = 51.6 bits (122), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 25/195 (12%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            +  GD+V G+++++ +   G  V +G  + G VH +E+    V  P      GQ VK KV
Sbjct: 199  LQPGDVVEGKVARMTNF--GAFVDLG-GVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKV 255

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYV 1375
            L +         + LS++ +L                 PG   + IE+ +P    + G V
Sbjct: 256  LSVDPDRE---RISLSIKQTL-----------------PGP-WDDIEEKAPAGSTLTGTV 294

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            K +TS G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+V+P  +R+ ++
Sbjct: 295  KRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLS 354

Query: 1436 LKTSDSRTASQSEIN 1450
            +K  + R   +   N
Sbjct: 355  MKALEERPKGEDSDN 369



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 147/351 (41%), Gaps = 30/351 (8%)

Query: 496 VKPGMVVKGKVIAVDS-FGAIVQF-PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           VK G VVKG+V+A+D    AIV     GV+ + P   +S   +       KVG EL   V
Sbjct: 21  VKVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKVGDELDLVV 80

Query: 554 LGV-----KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
           +       ++    ++H++   +     +    +  + +     +T+  K G  V    G
Sbjct: 81  ISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDDGETITAK--VTQAVKGGLVVDA--G 136

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSED 664
           V+GF P S +  D   E  + +  GQ ++ +I+   P+  R+ LS       +  + +E 
Sbjct: 137 VRGFVPASMI-TDHYVEDLNQFK-GQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEK 194

Query: 665 DLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 721
              +L  G +V G V  +T     V +   G   G +    ++ DH++  +    V+  G
Sbjct: 195 IFAELQPGDVVEGKVARMTNFGAFVDL---GGVDGLVHVSEISYDHVDKPS---DVLSAG 248

Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
            +   ++L +D +   + LS K +L      +   A      S + G V  +   G FV 
Sbjct: 249 QDVKVKVLSVDPDRERISLSIKQTLPGPWDDIEEKAP---AGSTLTGTVKRLTSFGAFVE 305

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G    S+      A  +     GQ V+  +L+V+ E  R+ LS+K
Sbjct: 306 VFPGVEGLVHISQISHKHIATPADVLKPGQEVQVKVLNVDPERQRLGLSMK 356


>gi|315646408|ref|ZP_07899526.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
 gi|315278051|gb|EFU41371.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
          Length = 405

 Score = 84.0 bits (206), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 171/377 (45%), Gaps = 57/377 (15%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSI 1223
            G  V G + K+++  A ++I       + + +      +L        +G+ V   V+SI
Sbjct: 26   GDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRE--LSSVQLDNASDAVQVGQEVECKVVSI 83

Query: 1224 NKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281
            N +K+ L L         S + +D  N  + ++    + D+    ++ ++ G  GLV  +
Sbjct: 84   NDDKESLVL---------SKRAIDTENSWEELEKHFADQDVFEVTVADVVKG--GLVADV 132

Query: 1282 G-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336
            G     P      HF E          S Y +G+ ++ KV E+ R       V LS +  
Sbjct: 133  GARGFIPASMVERHFVE--------DFSDY-KGRTLRVKVKELDRE---NNKVILSQKDV 180

Query: 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVL 1396
            L+    +N   +             + +L    +++G V+ +T  G F+ +   +D  V 
Sbjct: 181  LEEEFESNKQKV-------------MSELQDGQVLEGTVQRLTQFGAFVDVG-GVDGLVH 226

Query: 1397 LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS---RTASQSEINNLS 1453
            +S ++  +VE P      G  V  +VL V+P   ++ +++K +      TA +       
Sbjct: 227  VSEIAWSHVEKPADVLSEGDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGE------- 279

Query: 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
              + GDIV G +KR+ ++G F+ +    + GL H+S++S  H+   + + + G++V+VK+
Sbjct: 280  QFNTGDIVTGVVKRLVTFGAFVEL-APGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKV 338

Query: 1514 LKVDKEKRRISLGMKSS 1530
            L ++  ++R+SL +K +
Sbjct: 339  LDINTSEQRVSLSIKET 355



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 41/281 (14%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            + +GD V G I K+        V IG    G +   EL ++ + +       GQ V+CKV
Sbjct: 23   LKKGDTVKGTIVKLEDNQA--YVSIGYKYDGVIPVRELSSVQLDNASDAVQVGQEVECKV 80

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK-------IEDLSPNM 1369
            + I+                 D   S   S  + D +   + LEK        E    ++
Sbjct: 81   VSIN-----------------DDKESLVLSKRAIDTENSWEELEKHFADQDVFEVTVADV 123

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +  G V +V ++G FI  S  +  +  + + SD            G+ +  +V  ++  +
Sbjct: 124  VKGGLVADVGARG-FIPAS--MVERHFVEDFSDYK----------GRTLRVKVKELDREN 170

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
             +V ++ K         ++   +S L  G ++ G ++R+  +G F+ +   +  GL HVS
Sbjct: 171  NKVILSQKDVLEEEFESNKQKVMSELQDGQVLEGTVQRLTQFGAFVDVGGVD--GLVHVS 228

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E++  HV+    +   G++V+VK+LKVD EK +ISL +K++
Sbjct: 229  EIAWSHVEKPADVLSEGDQVRVKVLKVDPEKGKISLSIKAA 269



 Score = 45.8 bits (107), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S+++ G V++G V  +  FGA V   GGV  L  +  ++   + KP      G ++  +V
Sbjct: 194 SELQDGQVLEGTVQRLTQFGAFVDV-GGVDGLVHVSEIAWSHVEKPADVLSEGDQVRVKV 252

Query: 554 LGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNGV 609
           L V  ++  ++     +  K A    +  A ++     I  G + ++   G FV    GV
Sbjct: 253 LKVDPEKGKIS-----LSIKAAAPGPWETAGEQFNTGDIVTGVVKRLVTFGAFVELAPGV 307

Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           +G    S++       P  +   GQ V+ +++    + +R++LS 
Sbjct: 308 EGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRVSLSI 352



 Score = 45.4 bits (106), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 23/188 (12%)

Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
            + +G ++ G + ++     G  V +G  + G VH +E+    V  P     EG  V+ KV
Sbjct: 196  LQDGQVLEGTVQRLTQF--GAFVDVG-GVDGLVHVSEIAWSHVEKPADVLSEGDQVRVKV 252

Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
            L++    +G   + LS++++  G   T     +T                   IV G VK
Sbjct: 253  LKVDPE-KG--KISLSIKAAAPGPWETAGEQFNT-----------------GDIVTGVVK 292

Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
             + + G F+ L+  ++  V +S +S  ++ +P++    G+ V  +VL +    +RV +++
Sbjct: 293  RLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDINTSEQRVSLSI 352

Query: 1437 KTSDSRTA 1444
            K ++   A
Sbjct: 353  KETEEAPA 360



 Score = 45.4 bits (106), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVK 497
             V +S++A   V K      EG  VRV++L     +G  +  +KA+A            
Sbjct: 223 GLVHVSEIAWSHVEKPADVLSEGDQVRVKVLKVDPEKGKISLSIKAAAPGPWETAGEQFN 282

Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK 557
            G +V G V  + +FGA V+   GV+ L  +  +S   I  P +  K G E+  +VL + 
Sbjct: 283 TGDIVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKHIGTPQEVLKEGQEVQVKVLDIN 342

Query: 558 S--KRITVTHKKT 568
           +  +R++++ K+T
Sbjct: 343 TSEQRVSLSIKET 355


>gi|384173360|ref|YP_005554737.1| 30S ribosomal protein S1 [Arcobacter sp. L]
 gi|345472970|dbj|BAK74420.1| 30S ribosomal protein S1 [Arcobacter sp. L]
          Length = 550

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 168/344 (48%), Gaps = 41/344 (11%)

Query: 1192 FILDSA-----YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
            FI++ A     + P      + +  IGK V   V+ +NK +  + +V R     + +++ 
Sbjct: 128  FIIEDADGCEYFMPMAQSYLKAQGAIGKTVKAKVIKVNKAQNSI-IVSRK---KLIEESK 183

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
             + ++ +   +   + V G I KI S   G+ V +G  + G V++ E+      +P + Y
Sbjct: 184  AVKDNKVSEILENKEPVNGIIKKITSY--GMFVDLG-GIDGLVNYNEISYKGPVNPANYY 240

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
            +EG  V   VL   +  +   H+ LS++++L                 P + ++  ++L 
Sbjct: 241  NEGDEVSVVVLSYDKAKQ---HLSLSIKAALS---------------NPWEEIK--DELE 280

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSV 1425
                +   V N  S G F+ L   ++  + +S +S +  +++P++   IG+ +   V+ +
Sbjct: 281  VGDTITVTVSNFESYGAFVDLGNDIEGLLHISEISWNKNLKNPKELLTIGEEINVEVIEL 340

Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVG 1484
                KR+ V+LK    +  ++      +N H VGD++ G+I  +  +G F++I   +  G
Sbjct: 341  NVEQKRLRVSLKNLQEKPFTK-----FTNEHKVGDVIKGKIATLTDFGAFVSIGEVD--G 393

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            L H  E S +     +TI++ G++V+VKI+K+DKEK  ISL +K
Sbjct: 394  LLHNEEASWEPNAKCKTIFKKGDEVEVKIIKIDKEKENISLSVK 437



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 90/426 (21%), Positives = 181/426 (42%), Gaps = 79/426 (18%)

Query: 542 KFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHG 600
           K+KVG  +   ++G + +R +++HKK L K K  A + ++ E  + +   G I  +++ G
Sbjct: 67  KYKVGDTIPVMLMGNRGERPSISHKKVLQKEKFDAFVKAHGEDFEDVTIEGKIISVKQRG 126

Query: 601 CF-VRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRR--IN 651
            F +   +G + F P ++  L       +   +G+ VK +++      +SI  SR+  I 
Sbjct: 127 GFIIEDADGCEYFMPMAQSYL------KAQGAIGKTVKAKVIKVNKAQNSIIVSRKKLIE 180

Query: 652 LSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
            S  +K  +VSE  +++    V+G++  +T   + V +   G   G +    ++      
Sbjct: 181 ESKAVKDNKVSE--ILENKEPVNGIIKKITSYGMFVDL---GGIDGLVNYNEIS------ 229

Query: 712 TVMKSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV 764
              K  + P   +++       +L  D    +L LS K +L N  +++  +   +     
Sbjct: 230 --YKGPVNPANYYNEGDEVSVVVLSYDKAKQHLSLSIKAALSNPWEEIKDE---LEVGDT 284

Query: 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSET 823
           +   V N    G FV     + G    S+ + +    +  +   +G+ +   ++++N E 
Sbjct: 285 ITVTVSNFESYGAFVDLGNDIEGLLHISEISWNKNLKNPKELLTIGEEINVEVIELNVEQ 344

Query: 824 GRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVH 883
            R+ +SLK                 L+EK     +++H            +G VI+GK+ 
Sbjct: 345 KRLRVSLKN----------------LQEKPFTKFTNEHK-----------VGDVIKGKIA 377

Query: 884 ESNDFGVVVSFEEHSDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVD 935
              DFG  VS  E   V G + H++ A            + G  ++  I+ + K +  + 
Sbjct: 378 TLTDFGAFVSIGE---VDGLL-HNEEASWEPNAKCKTIFKKGDEVEVKIIKIDKEKENIS 433

Query: 936 LSLKTV 941
           LS+K +
Sbjct: 434 LSVKEI 439


>gi|294501088|ref|YP_003564788.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
 gi|295706435|ref|YP_003599510.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
 gi|294351025|gb|ADE71354.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
 gi|294804094|gb|ADF41160.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
          Length = 378

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 147/314 (46%), Gaps = 40/314 (12%)

Query: 1241 ISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGLVVQIG-----PHLYGRVHFTE 1293
            +S + VD     D ++  +  G++    + +I+ G  GLVV IG     P      HF  
Sbjct: 81   LSKRAVDAEKAWDGLEAKLSSGEVFEAVVKEIVKG--GLVVDIGVRGFIPASLVETHFV- 137

Query: 1294 LKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1353
                   D  + Y + Q +  KV+E+ +       V LS R+ ++        ++     
Sbjct: 138  -------DDFAEYQD-QTLTVKVVELDKE---KNRVILSHRAVVEEELVQQKENV----- 181

Query: 1354 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFP 1413
                    +E L    +++G V+ +T  G F+ +   +D  V +S LS   VE P     
Sbjct: 182  --------LESLKEGQVLEGTVQRLTDFGAFVDVG-GVDGLVHISQLSHTRVEKPSDVVA 232

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
             G  V  +VLSV+  + RV +++K  D+     S I+  + L  GD+V G +KR+ S+G 
Sbjct: 233  EGDAVKVKVLSVDKSTGRVSLSIK--DTLEGPWSNIS--TKLRQGDVVDGTVKRLVSFGA 288

Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFK 1533
            F+ +    + GL H+S++S  H+     +   GEKV VK+L V++++RR+SL ++    +
Sbjct: 289  FVEV-LPGVEGLVHISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSIRDLEEE 347

Query: 1534 NDADNLQMSSEEES 1547
               D      +EES
Sbjct: 348  EQEDYGDYELQEES 361



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G V++G V  +  FGA V   GGV  L  +  +S   + KP      G  +  +VL 
Sbjct: 185 LKEGQVLEGTVQRLTDFGAFVDV-GGVDGLVHISQLSHTRVEKPSDVVAEGDAVKVKVLS 243

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V   + R++++ K TL +   + +S+     D  +  G + ++   G FV    GV+G  
Sbjct: 244 VDKSTGRVSLSIKDTL-EGPWSNISTKLRQGD--VVDGTVKRLVSFGAFVEVLPGVEGLV 300

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             S++       P  +   G+ V  +++      RR++LS 
Sbjct: 301 HISQISHKHIGTPHEVLSEGEKVTVKVLDVNEQERRVSLSI 341



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 42/67 (62%)

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
             +++L VG+ V G I +VE   +++ + N+ L G+  +SEL+  H++    + + G +V+
Sbjct: 9    EVTSLEVGETVKGTITKVEEKQVYVDVPNSKLDGIIPISELASLHIEKAGDVIQEGAEVE 68

Query: 1511 VKILKVD 1517
             K++KV+
Sbjct: 69   AKVIKVE 75


>gi|395775872|ref|ZP_10456387.1| 30S ribosomal protein S1 [Streptomyces acidiscabies 84-104]
          Length = 501

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 49/373 (13%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  +   
Sbjct: 39   GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VAVGDEIEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++    E  IV G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEKIKEEDGIVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD- 1338
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R+ L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGKE----LEAKIIELDKNRN---NVVLSRRAWLEQ 196

Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
              S    + L+T              L    +  G V ++ + G F+ L   +D  V +S
Sbjct: 197  TQSEVRQTFLTT--------------LQKGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVS 241

Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-V 1457
             LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +
Sbjct: 242  ELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ-----FARTHQI 296

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            G +V G++ ++  +G F+ + +  + GL H+SEL+E HV+  E + +  +++ VK++ +D
Sbjct: 297  GQVVPGKVTKLVPFGAFVRV-DEGIEGLVHISELAERHVEIPEQVVQVNDEIFVKVIDID 355

Query: 1518 KEKRRISLGMKSS 1530
             E+RRISL +K +
Sbjct: 356  LERRRISLSLKQA 368



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDEIEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEKIKE-EDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 155 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 322 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 371



 Score = 45.1 bits (105), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 128/290 (44%), Gaps = 37/290 (12%)

Query: 1165 QRVTGYVYKVDNEWALLT--ISRHLKAQLFILD---SAYEPSELQEFQR----RFHIGKA 1215
            +R  G + K+  E  ++T  +   +K  L ILD     + P+ L E +R    + ++GK 
Sbjct: 113  ERAWGTIEKIKEEDGIVTGTVIEVVKGGL-ILDIGLRGFLPASLVEMRRVRDLQPYVGKE 171

Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
            +   ++ ++K +  + L  R +     ++T         T + +G +  G +S I++   
Sbjct: 172  LEAKIIELDKNRNNVVLSRRAW----LEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNF-- 225

Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            G  V +G  + G VH +EL    +  P    + GQ V  +VL++         V LSL++
Sbjct: 226  GAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRE---RVSLSLKA 281

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
            + +                P +   +   +    +V G V  +   G F+ +   ++  V
Sbjct: 282  TQE---------------DPWQQFARTHQIG--QVVPGKVTKLVPFGAFVRVDEGIEGLV 324

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
             +S L++ +VE PE+   +   +  +V+ ++   +R+ ++LK ++    S
Sbjct: 325  HISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANESFGS 374


>gi|157738252|ref|YP_001490936.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
 gi|157700106|gb|ABV68266.1| 30S ribosomal protein S1 [Arcobacter butzleri RM4018]
          Length = 550

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 170/352 (48%), Gaps = 40/352 (11%)

Query: 1183 ISRHLKAQLFILDSA----YEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQ 1238
            +S   K    I D+A    + P      + +  IGK V   V+ +NK +  + +V R   
Sbjct: 120  VSVKQKGGFVIEDAAGCEYFMPMAQSYLKTQGAIGKTVKAKVIKVNKAQNSI-IVSRK-- 176

Query: 1239 DGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298
              + +++ +I ++ +   + + + + G I KI S   G+ V +G  + G V++ E+    
Sbjct: 177  -KLIEESKNIKDNKVAEILEKKEAINGTIKKITSY--GMFVDLGG-IDGLVNYNEISYKG 232

Query: 1299 VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKH 1358
              +P + Y+EG  V   VL   +  +   H+ LS++++L                 P K 
Sbjct: 233  PVNPANYYNEGDEVSVVVLAYDKAKQ---HLSLSIKAALS---------------NPWKE 274

Query: 1359 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKL 1417
            ++   ++   + V   V N  S G F+ L   ++  + +S +S +  +++P++   IG  
Sbjct: 275  IKDQLEVGDTITVT--VSNFESYGAFVDLGNDIEGLLHISEISWNKNLKNPKELLTIGDE 332

Query: 1418 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFIT 1476
            +   V+ +    KR+ V+LK    +  ++       N H VGD++ G+I  +  +G F+ 
Sbjct: 333  INVEVIELNVEQKRLRVSLKNLQEKPFTK-----FVNEHKVGDVIKGKIATLTDFGAFVN 387

Query: 1477 IENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            I + +  GL H  E S +     +++++ G++V+V+I+K+DKEK  ISL +K
Sbjct: 388  IGDVD--GLLHNEEASWESNAKCKSLFKKGDEVEVRIIKIDKEKENISLSIK 437



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 109/515 (21%), Positives = 216/515 (41%), Gaps = 73/515 (14%)

Query: 456 KYKEGSCVRVRILGFRHLEGLAT--GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
           KY  G  + V ++G +      +   +L+   F+  V TH +    + ++GK+++V   G
Sbjct: 67  KYNVGDVIPVMLMGNKGERPNISHKKVLQKEKFDNFVKTHGEDFEDVTIEGKIVSVKQKG 126

Query: 514 A-IVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR--ITVTHKKTLV 570
             +++   G +   P   M++  +   G    +G  +  +V+ V   +  I V+ KK + 
Sbjct: 127 GFVIEDAAGCEYFMP---MAQSYLKTQG---AIGKTVKAKVIKVNKAQNSIIVSRKKLIE 180

Query: 571 KSKLAILSSYAEATDRL-ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
           +SK    +  AE  ++    +G I KI  +G FV    G+ G    +E+       P++ 
Sbjct: 181 ESKNIKDNKVAEILEKKEAINGTIKKITSYGMFVDL-GGIDGLVNYNEISYKGPVNPANY 239

Query: 630 YHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVV 686
           Y+ G  V   +++   A + ++LS    +  P +  +D L ++G  ++  V V    +  
Sbjct: 240 YNEGDEVSVVVLAYDKAKQHLSLSIKAALSNPWKEIKDQL-EVGDTIT--VTVSNFESYG 296

Query: 687 VYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP------GYEFD-QLLVLDNESSNLLL 739
            +V      +G +       H+   +  K++  P      G E + +++ L+ E   L +
Sbjct: 297 AFVDLGNDIEGLL-------HISEISWNKNLKNPKELLTIGDEINVEVIELNVEQKRLRV 349

Query: 740 SAKYSLINSAQQLP-SDASHIHP-NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
           S K     + Q+ P +   + H    V+ G +  + + G FV  +G + G     +A   
Sbjct: 350 SLK-----NLQEKPFTKFVNEHKVGDVIKGKIATLTDFGAFVN-IGDVDGLLHNEEASWE 403

Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQ 857
             A     +  G  V   I+ ++ E   I+LS+K    S + A   Q+ + L        
Sbjct: 404 SNAKCKSLFKKGDEVEVRIIKIDKEKENISLSIKD--ISDSPAKRFQDAYKL-------- 453

Query: 858 SSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQ---LAGATV 914
                            G +++G V +  DFG+ +  E + D  G I +     L    V
Sbjct: 454 -----------------GDIVKGPVKDIKDFGIFIKLENNLD--GLIRNEDFGPLKADEV 494

Query: 915 ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
           ++G  I+A I+++   +  V LS++ +   + RE 
Sbjct: 495 KNGDEIEAVIINIDTKKNRVRLSVRRLEQQQEREV 529


>gi|386387073|ref|ZP_10072140.1| 30S ribosomal protein S1 [Streptomyces tsukubaensis NRRL18488]
 gi|385665461|gb|EIF89137.1| 30S ribosomal protein S1 [Streptomyces tsukubaensis NRRL18488]
          Length = 496

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 184/398 (46%), Gaps = 55/398 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IG++  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 13   VAVNDIGNEEAFLAAIDETIKYFNDGDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI 72

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P+E+        +G  +   VL   KE K  RL+L   +        + +   ++
Sbjct: 73   KHDVDPNEV------VKVGDEIEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 119

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  IV G + +++ G  GL++ IG   +      E++ +    P  G +    +  
Sbjct: 120  KIKEEDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGKE----LDA 173

Query: 1315 KVLEISRTVRGTFHVELSLRSSLD-GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQG 1373
            K++E+ +      +V LS R+ L+   S    + L+T              L    +  G
Sbjct: 174  KIIELDKNRN---NVVLSRRAWLEQTQSEVRQTFLTT--------------LQKGQVRSG 216

Query: 1374 YVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
             V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV 
Sbjct: 217  VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVS 275

Query: 1434 VTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
            ++LK +      Q      +  H +G +V G++ ++  +G F+ ++   + GL H+SEL+
Sbjct: 276  LSLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVDE-GIEGLVHISELA 329

Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            E HV+  E + +  +++ VK++ +D E+RRISL +K +
Sbjct: 330  ERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQA 367



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 150/350 (42%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G ++ VD    ++      + + P   +S    V P +  KVG E+   VL  + 
Sbjct: 38  GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEIEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGTIEKIKEE-DGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ +  +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YVGKELDAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQ 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 264 VLDVDMDRERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 320

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   V   +   ++D++ E  RI+LSLKQ+  S
Sbjct: 321 GLVHISELAERHVEIPEQVVQVNDEIFVKVIDIDLERRRISLSLKQANES 370


>gi|419720264|ref|ZP_14247507.1| S1 RNA binding domain protein [Lachnoanaerobaculum saburreum F0468]
 gi|383303632|gb|EIC95074.1| S1 RNA binding domain protein [Lachnoanaerobaculum saburreum F0468]
          Length = 374

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 164/350 (46%), Gaps = 35/350 (10%)

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1259
            L E  +  H G+ V G V+ + +++ +L +  +   DGI  ++ + SNDN   ++T +H 
Sbjct: 16   LDESFKTLHTGEVVNGKVIDVKEDQIILNVGFK--SDGIITRS-EYSNDNNLDLRTVVHV 72

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVH------FTELKNICVSDPLSGYDEGQFV- 1312
            GD +  ++ KI  G G +++        R +      F   K +     +   D G  V 
Sbjct: 73   GDEMEAKVLKINDGEGQVLLSYKKLAQDRGNKKLEDAFNN-KEVLTGKVVQVVDGGLSVV 131

Query: 1313 --KCKVLEISRTVRGTFHVELSLRSSLD---GMSSTNSSDLSTDVDTPGKHLEK------ 1361
                +V   +  V  TF  +LS     D    ++  N        D     L K      
Sbjct: 132  VDDARVFIPASLVSDTFERDLSKYKDTDIEFVITEFNPRRRRIIGDRKQLLLAKKEEQKK 191

Query: 1362 --IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
               E ++P  +++G VKNVT  G F+ L    D  + +S +S G VE+P+K F  G+ V 
Sbjct: 192  ALFEKITPGDVIEGTVKNVTDFGAFVDLG-GADGLLHISEMSWGRVENPKKVFKSGEKVT 250

Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
              +  +    +++ +++K  D      +E         G++V G++ R+  +G F+ I N
Sbjct: 251  AFIKDIS--GEKIALSMKFPDQNPWLDAE----EKFARGNVVKGRVARMTDFGAFVEISN 304

Query: 1480 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
              +  L HVS++S DHV+    + + G++V+  I++ ++ +++ISL +K+
Sbjct: 305  -GVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPEKKISLSIKA 353



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 106/245 (43%), Gaps = 19/245 (7%)

Query: 415 KVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSCVRVRIL 468
           KVV+V D GL +++D     V  PA + +SD  E ++ K     +E    E +  R RI+
Sbjct: 119 KVVQVVDGGLSVVVD--DARVFIPASL-VSDTFERDLSKYKDTDIEFVITEFNPRRRRII 175

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
           G R    LA    +  A          + PG V++G V  V  FGA V   GG   L  +
Sbjct: 176 GDRKQLLLAKKEEQKKAL------FEKITPGDVIEGTVKNVTDFGAFVDL-GGADGLLHI 228

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
             MS   +  P K FK G ++   +  +  ++I ++ K       L     +A      +
Sbjct: 229 SEMSWGRVENPKKVFKSGEKVTAFIKDISGEKIALSMKFPDQNPWLDAEEKFARGN---V 285

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G + ++   G FV   NGV      S++  D   +PS +  VG  V+  I+      +
Sbjct: 286 VKGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPEK 345

Query: 649 RINLS 653
           +I+LS
Sbjct: 346 KISLS 350



 Score = 48.1 bits (113), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 139/346 (40%), Gaps = 57/346 (16%)

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDDL 666
           G   RSE   D   +  ++ HVG  ++ +++       ++ LS+      +  +  ED  
Sbjct: 51  GIITRSEYSNDNNLDLRTVVHVGDEMEAKVLKINDGEGQVLLSYKKLAQDRGNKKLEDAF 110

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH------ATVMKSVIKP 720
                L   VV VV     VV   A+ +    IP   ++D  E        T ++ VI  
Sbjct: 111 NNKEVLTGKVVQVVDGGLSVVVDDARVF----IPASLVSDTFERDLSKYKDTDIEFVITE 166

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
                + ++ D +   LLL+ K       +Q  +    I P  V+ G V N+ + G FV 
Sbjct: 167 FNPRRRRIIGDRKQ--LLLAKK------EEQKKALFEKITPGDVIEGTVKNVTDFGAFVD 218

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            LG   G    S+   G+  +  K +  G+ V + I D++ E  +I LS+K         
Sbjct: 219 -LGGADGLLHISEMSWGRVENPKKVFKSGEKVTAFIKDISGE--KIALSMK--------- 266

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            F  ++  L+ +                 E F  G+V++G+V    DFG  V      D 
Sbjct: 267 -FPDQNPWLDAE-----------------EKFARGNVVKGRVARMTDFGAFVEISNGVDA 308

Query: 901 YGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
              ++     H +     ++ G  ++A I++  + E+ + LS+K +
Sbjct: 309 LLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPEKKISLSIKAL 354


>gi|384179530|ref|YP_005565292.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar finitimus
            YBT-020]
 gi|324325614|gb|ADY20874.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar finitimus
            YBT-020]
          Length = 382

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 180/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NIA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEVKAGDIREGIVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          ++   +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENIAGEVKAGD--IREGIVKRLVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354


>gi|319950983|ref|ZP_08024854.1| 30S ribosomal protein S1 [Dietzia cinnamea P4]
 gi|319435365|gb|EFV90614.1| 30S ribosomal protein S1 [Dietzia cinnamea P4]
          Length = 490

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 127/257 (49%), Gaps = 28/257 (10%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGL++ IG   +      E++ +    P  G    Q ++ K++E+ +      +V LS R
Sbjct: 135  GGLILDIGLRGFLPASLVEMRRVRDLLPYVG----QELEAKIIELDKNRN---NVVLSRR 187

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + L+   S   S+              +  L    + +G V ++ + G F+ L   +D  
Sbjct: 188  AWLEQTQSAVRSEF-------------LHRLQKGQVRKGVVSSIVNFGAFVDLG-GVDGL 233

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S LS  +++ P +   +G+ V   VL V+   +RV ++LK +      +    + + 
Sbjct: 234  VHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKAT-----QEDPWRHFAR 288

Query: 1455 LH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
             H +G IV G++ ++  +G F+ +E   + GL H+SEL+E HV+  + +   G+   VK+
Sbjct: 289  THAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAERHVEVPDQVVSVGDDAMVKV 347

Query: 1514 LKVDKEKRRISLGMKSS 1530
            + +D ++RRISL +K +
Sbjct: 348  IDIDLDRRRISLSLKQA 364



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 147/375 (39%), Gaps = 46/375 (12%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI ++     D  I  G I K+++    +      +G  P  EL +    +P  +  VG 
Sbjct: 24  AIDATIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVEVGD 83

Query: 635 VVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIA 691
            V+  +++      R+ LS      +    + ++L +    V G V  V    +++ +  
Sbjct: 84  EVEALVLTKEDKDGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVKGGLILDIGL 143

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V   +   G E + +++ LD   +N++LS +  L  +  
Sbjct: 144 RGFLPASL--------VEMRRVRDLLPYVGQELEAKIIELDKNRNNVVLSRRAWLEQTQS 195

Query: 751 QLPSDASH-IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
            + S+  H +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 196 AVRSEFLHRLQKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 254

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
           Q V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 255 QEVTVEVLDVDLDRERVSLSLK-ATQEDPWRHFARTH----------------------- 290

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAI 924
               IG ++ GKV +   FG  V  EE  +    I+     H ++    V  G      +
Sbjct: 291 ---AIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMVKV 347

Query: 925 LDVAKAERLVDLSLK 939
           +D+    R + LSLK
Sbjct: 348 IDIDLDRRRISLSLK 362


>gi|302787034|ref|XP_002975287.1| hypothetical protein SELMODRAFT_415455 [Selaginella moellendorffii]
 gi|300156861|gb|EFJ23488.1| hypothetical protein SELMODRAFT_415455 [Selaginella moellendorffii]
          Length = 312

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 19/216 (8%)

Query: 1106 NLFSNFKIGQTVTARIIAKSNKP-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIG 1164
            N    + +GQTV A+I++K       + +   +LS++PS L  ++    ++  E  V+I 
Sbjct: 51   NPLRKYSVGQTVRAKILSKRKTSRKHRNAATLDLSLRPSELAGNDAACSVITFE-TVTIE 109

Query: 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT---GHVL 1221
            Q V  YV +V + WA L +S HLK  LFILD++ +PSEL+ F +     K+VT    H+ 
Sbjct: 110  QSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFLK--STSKSVTCSSCHIR 167

Query: 1222 SINKEKKLLRLVLRP-----FQDG--ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274
            S+N E+K + L L P     F +G  +  + +D+           G  + G +  ++   
Sbjct: 168  SVNHERKQVDLSLHPKATSLFTEGQFVRCRVLDLKRPGRGEM---GLELSGFVKNVME-- 222

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQ 1310
             G  V + P L  R+    L N  V +P   +  G+
Sbjct: 223  KGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGK 258



 Score = 69.7 bits (169), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 48/136 (35%)

Query: 1304 SGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIE 1363
            S + EGQFV+C+VL++ R  RG   +ELS                               
Sbjct: 186  SLFTEGQFVRCRVLDLKRPGRGEMGLELS------------------------------- 214

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
                     G+VKNV  KGCF++LS  L+A++ L NLS+ +V++P + FP GK       
Sbjct: 215  ---------GFVKNVMEKGCFVVLSPSLEARIQLKNLSNSFVQNPAEMFPPGK------- 258

Query: 1424 SVEPLSKRVEVTLKTS 1439
             V+  +KR+ + +K S
Sbjct: 259  -VDAETKRISLGMKAS 273



 Score = 47.8 bits (112), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 118/280 (42%), Gaps = 46/280 (16%)

Query: 1301 DPLSGYDEGQFVKCKVL---EISRTVRGTFHVELSLR-SSLDGMSSTNSSDLSTDVDTPG 1356
            +PL  Y  GQ V+ K+L   + SR  R    ++LSLR S L G      +D +  V T  
Sbjct: 51   NPLRKYSVGQTVRAKILSKRKTSRKHRNAATLDLSLRPSELAG------NDAACSVIT-- 102

Query: 1357 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG------YVESPEK 1410
                  E ++    V  YV+ V     +++LS  L   + + + SD       +++S  K
Sbjct: 103  -----FETVTIEQSVIRYVQEVKDNWAWLVLSPHLKGCLFILDTSDDPSELERFLKSTSK 157

Query: 1411 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL--------HVGDIVI 1462
                    +  + SV    K+V+++L    +   ++ +      L         +G  + 
Sbjct: 158  SVTCS---SCHIRSVNHERKQVDLSLHPKATSLFTEGQFVRCRVLDLKRPGRGEMGLELS 214

Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            G +K V   G F+ + + +L     +  LS   V N   ++  G        KVD E +R
Sbjct: 215  GFVKNVMEKGCFVVL-SPSLEARIQLKNLSNSFVQNPAEMFPPG--------KVDAETKR 265

Query: 1523 ISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSL 1562
            ISLGMK+SY   +     + + EE     ++   Y R+SL
Sbjct: 266  ISLGMKASYLTPEDG---IDTMEEEGRLQQKRSYYRRTSL 302


>gi|337285521|ref|YP_004624994.1| 30S ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
 gi|335358349|gb|AEH44030.1| ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
          Length = 567

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 148/321 (46%), Gaps = 40/321 (12%)

Query: 1210 FHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISK 1269
            F +G  +   V+  ++EK+ + L       GI   T D      + +  EG  + G++  
Sbjct: 244  FKVGDKIKVKVIKYDREKEKIAL-------GIKQLTPDPWETVAEKY-PEGKRIEGKVVS 295

Query: 1270 ILSGVGGLVVQIGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
            + +   G  V++ P + G +H +EL     +  P    + G  V+  VL +    R    
Sbjct: 296  LTNF--GAFVELEPGVEGLIHISELSWTKRIKHPRDILEVGDKVEVVVLGVDSENR---R 350

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
            V LSL+         N  D+             +E  S  M+++  VK VT  G F+ + 
Sbjct: 351  VSLSLKQV-----EPNPWDVL------------VEQFSEGMVIEAPVKTVTDFGVFVEVM 393

Query: 1389 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK--TSDSRTASQ 1446
              +D  + +S+LS G ++ P + +  G ++   +L ++   +++ + +K  T D   +  
Sbjct: 394  EGIDGFIHVSDLSWGRIKHPSEAYKPGDMIQAVILKIDREKEKLALGVKQLTPDPWESVP 453

Query: 1447 SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAG 1506
             +        VG +V G++  V  +G+F+ +E   + GL HVSE+S+  V     ++  G
Sbjct: 454  EK------YPVGSVVTGKVSNVTDFGVFVELEE-GVEGLVHVSEISDKKVKTPVGMFEPG 506

Query: 1507 EKVKVKILKVDKEKRRISLGM 1527
            ++VK K++K++ E RRI L +
Sbjct: 507  QEVKAKVVKIEPESRRIGLSI 527



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 146/345 (42%), Gaps = 31/345 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
           G V++G V ++  +G  V   GGV  L  +  +S   +  P   FKVG ++  +V+    
Sbjct: 201 GQVLEGTVKSITDYGVFVDL-GGVDGLLHVSDISWGRVKHPSNYFKVGDKIKVKVIKYDR 259

Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           + ++I +  K+        +   Y E        G +  +   G FV    GV+G    S
Sbjct: 260 EKEKIALGIKQLTPDPWETVAEKYPEGKR---IEGKVVSLTNFGAFVELEPGVEGLIHIS 316

Query: 617 ELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDLVKL---GS 671
           EL      + P  +  VG  V+  ++     +RR++LS   ++P     D LV+    G 
Sbjct: 317 ELSWTKRIKHPRDILEVGDKVEVVVLGVDSENRRVSLSLKQVEPN--PWDVLVEQFSEGM 374

Query: 672 LVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEFDQL 727
           ++   V  VT   V V V+     +G     H++D     ++H +      KPG     +
Sbjct: 375 VIEAPVKTVTDFGVFVEVM-----EGIDGFIHVSDLSWGRIKHPS---EAYKPGDMIQAV 426

Query: 728 LV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           ++ +D E   L L  K    +  + +P      +P  SVV G V N+ + G FV     +
Sbjct: 427 ILKIDREKEKLALGVKQLTPDPWESVPEK----YPVGSVVTGKVSNVTDFGVFVELEEGV 482

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
            G    S+  D +       +  GQ V++ ++ +  E+ RI LS+
Sbjct: 483 EGLVHVSEISDKKVKTPVGMFEPGQEVKAKVVKIEPESRRIGLSI 527



 Score = 63.9 bits (154), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 3/130 (2%)

Query: 1400 LSDGYVESPEK-EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1458
             S  +++ P+  E  IG  +   V+SV+     V V+ +    + + + +   L NL  G
Sbjct: 142  FSQAFLKPPKNPEEIIGTTLKVEVVSVDRKKNNVVVSHRNYLEKESERRKKELLENLEEG 201

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             ++ G +K +  YG+F+ +   +  GL HVS++S   V +    ++ G+K+KVK++K D+
Sbjct: 202  QVLEGTVKSITDYGVFVDLGGVD--GLLHVSDISWGRVKHPSNYFKVGDKIKVKVIKYDR 259

Query: 1519 EKRRISLGMK 1528
            EK +I+LG+K
Sbjct: 260  EKEKIALGIK 269



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/415 (21%), Positives = 161/415 (38%), Gaps = 82/415 (19%)

Query: 726  QLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCFVRFLGR 784
            +++ +D + +N+++S +  L   +++   +   ++    V+ G V +I + G FV  LG 
Sbjct: 164  EVVSVDRKKNNVVVSHRNYLEKESERRKKELLENLEEGQVLEGTVKSITDYGVFVD-LGG 222

Query: 785  LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
            + G    S    G+    S  + VG  ++  ++  + E  +I L +KQ            
Sbjct: 223  VDGLLHVSDISWGRVKHPSNYFKVGDKIKVKVIKYDREKEKIALGIKQLTPDPW------ 276

Query: 845  EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI 904
                  E +A               E +  G  IEGKV    +FG  V  E    V G I
Sbjct: 277  ------ETVA---------------EKYPEGKRIEGKVVSLTNFGAFVELE--PGVEGLI 313

Query: 905  THHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKT-------VFIDRFREA 949
               +L+           +E G  ++  +L V    R V LSLK        V +++F E 
Sbjct: 314  HISELSWTKRIKHPRDILEVGDKVEVVVLGVDSENRRVSLSLKQVEPNPWDVLVEQFSEG 373

Query: 950  NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSD--YNT 1007
                   K         D GV   V   ++                  G+  VSD  +  
Sbjct: 374  MVIEAPVK------TVTDFGVFVEVMEGID------------------GFIHVSDLSWGR 409

Query: 1008 QKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLV 1067
             K P + +  G  + A ++ +       +L L +K ++     S         Y VGS+V
Sbjct: 410  IKHPSEAYKPGDMIQAVILKIDREKE--KLALGVKQLTPDPWESV-----PEKYPVGSVV 462

Query: 1068 QAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
              +++ +    + ++   G  G +H++E++D K   V+     F+ GQ V A+++
Sbjct: 463  TGKVSNVTDFGVFVELEEGVEGLVHVSEISDKK---VKTPVGMFEPGQEVKAKVV 514



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/387 (19%), Positives = 161/387 (41%), Gaps = 48/387 (12%)

Query: 1052 SKRAKKK--SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFS 1109
            S+R KK+   + + G +++  +  I    + +  G G  G +H+++++  +   V++  +
Sbjct: 187  SERRKKELLENLEEGQVLEGTVKSITDYGVFVDLG-GVDGLLHVSDISWGR---VKHPSN 242

Query: 1110 NFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1169
             FK+G  +  ++I    + +     + +L+  P   TV+E              G+R+ G
Sbjct: 243  YFKVGDKIKVKVIKYDREKEKIALGIKQLTPDP-WETVAE----------KYPEGKRIEG 291

Query: 1170 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKL 1229
             V  + N  A + +   ++  + I + ++    ++  +    +G  V   VL ++ E + 
Sbjct: 292  KVVSLTNFGAFVELEPGVEGLIHISELSWT-KRIKHPRDILEVGDKVEVVVLGVDSENRR 350

Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
            + L L+  +    D  V+           EG ++   +  +     G+ V++   + G +
Sbjct: 351  VSLSLKQVEPNPWDVLVE--------QFSEGMVIEAPVKTVTDF--GVFVEVMEGIDGFI 400

Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
            H ++L    +  P   Y  G  ++  +L+I R                          L 
Sbjct: 401  HVSDLSWGRIKHPSEAYKPGDMIQAVILKIDR--------------------EKEKLALG 440

Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
                TP       E      +V G V NVT  G F+ L   ++  V +S +SD  V++P 
Sbjct: 441  VKQLTPDPWESVPEKYPVGSVVTGKVSNVTDFGVFVELEEGVEGLVHVSEISDKKVKTPV 500

Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
              F  G+ V  +V+ +EP S+R+ +++
Sbjct: 501  GMFEPGQEVKAKVVKIEPESRRIGLSI 527



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 144/364 (39%), Gaps = 58/364 (15%)

Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFL------------PRNNLAENSGIDV 274
           LE ++EG VL   VKSI D+G  +  G     G L            P N       I V
Sbjct: 195 LENLEEGQVLEGTVKSITDYGVFVDLG--GVDGLLHVSDISWGRVKHPSNYFKVGDKIKV 252

Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
           K        V   DR ++ + L        K +T D      +    G  +  +V S+  
Sbjct: 253 K--------VIKYDREKEKIALG------IKQLTPDPWETVAEKYPEGKRIEGKVVSLTN 298

Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL--- 391
            G  +       G + I  L  T    + ++      KV   +L VD  +R V L+L   
Sbjct: 299 FGAFVELEPGVEGLIHISELSWTKRIKHPRDILEVGDKVEVVVLGVDSENRRVSLSLKQV 358

Query: 392 --NPY-LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDV 445
             NP+ +L  +     V    V  + D    V V  G+               ++ +SD+
Sbjct: 359 EPNPWDVLVEQFSEGMVIEAPVKTVTDFGVFVEVMEGID-------------GFIHVSDL 405

Query: 446 AEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGI--LKASAFEGLVFTHSDVKPGMVV 502
           +   ++   + YK G  ++  IL   R  E LA G+  L    +E +   +     G VV
Sbjct: 406 SWGRIKHPSEAYKPGDMIQAVILKIDREKEKLALGVKQLTPDPWESVPEKYP---VGSVV 462

Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKR 560
            GKV  V  FG  V+   GV+ L  +  +S+ ++  P   F+ G E+  +V+ +  +S+R
Sbjct: 463 TGKVSNVTDFGVFVELEEGVEGLVHVSEISDKKVKTPVGMFEPGQEVKAKVVKIEPESRR 522

Query: 561 ITVT 564
           I ++
Sbjct: 523 IGLS 526


>gi|229189679|ref|ZP_04316693.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10876]
 gi|228593728|gb|EEK51533.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10876]
          Length = 382

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 176/398 (44%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R           
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDREKNRVI----- 164

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
                   +S     +L  D     K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 165  -------LSHKAVVELELD----SKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ +    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEV-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365


>gi|30019646|ref|NP_831277.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 14579]
 gi|229126911|ref|ZP_04255922.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-Cer4]
 gi|296502167|ref|YP_003663867.1| 30S ribosomal protein S1 [Bacillus thuringiensis BMB171]
 gi|29895190|gb|AAP08478.1| SSU ribosomal protein S1P [Bacillus cereus ATCC 14579]
 gi|228656511|gb|EEL12338.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-Cer4]
 gi|296323219|gb|ADH06147.1| 30S ribosomal protein S1 [Bacillus thuringiensis BMB171]
          Length = 382

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 176/398 (44%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVIVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R           
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDREKNRVI----- 164

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
                   +S     +L  D     K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 165  -------LSHKAVVELELD----SKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365


>gi|377556031|ref|ZP_09785754.1| 30S ribosomal protein S1 [Lactobacillus gastricus PS3]
 gi|376168769|gb|EHS87497.1| 30S ribosomal protein S1 [Lactobacillus gastricus PS3]
          Length = 409

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 95/166 (57%), Gaps = 6/166 (3%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            +L+P  +V+G V  +T+ G FI L   +D  V +S +S  +V+ P     +G+ V  +VL
Sbjct: 197  ELAPGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPADVLEVGEDVKVKVL 255

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1483
            SV+P  +R+ +++K +        E    S    G ++ G +KR+ S+G F+ +    + 
Sbjct: 256  SVDPERERISLSIKQTLPGPWDDIE----SKAPQGTVLTGTVKRLTSFGAFVEV-FPGVE 310

Query: 1484 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            GL H+S++S  H+     + + GE+V+VK+L V+ +K+R+ L +K+
Sbjct: 311  GLVHISQISHKHIATPADVLKVGEEVQVKVLNVEADKQRLGLSIKA 356



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 2/110 (1%)

Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
            +++ +EP   R+ ++ K       +++       L  GD+V G++ R+ ++G FI +   
Sbjct: 164  KIVEIEPSENRLILSHKEIVQEQHAEAAAKIFGELAPGDVVEGKVARMTNFGAFIDLGGV 223

Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            +  GL HVSE+S DHVD    +   GE VKVK+L VD E+ RISL +K +
Sbjct: 224  D--GLVHVSEISYDHVDKPADVLEVGEDVKVKVLSVDPERERISLSIKQT 271



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 19/242 (7%)

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 663
           +GV+G  P ++L   P  + + +  VG V+   ++S I  S + N S+++   R+     
Sbjct: 46  SGVEGIVPANQLSTKPVNDINEVVKVGDVLDLVVISKI-GSDKENGSYLLSHRRLEAMKV 104

Query: 664 -DDL---VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719
            D++      G  ++  V       +VV    +G+   ++ T+H  D L           
Sbjct: 105 WDEIQAKFDNGETLTATVTQAVRGGLVVDAGVRGFVPASMITDHYVDDLNQFK------- 157

Query: 720 PGYEFDQLLVLDNESSNLLLSAKYSLINS--AQQLPSDASHIHPNSVVHGYVCNIIETGC 777
            G E +  +V    S N L+ +   ++    A+        + P  VV G V  +   G 
Sbjct: 158 -GQELEFKIVEIEPSENRLILSHKEIVQEQHAEAAAKIFGELAPGDVVEGKVARMTNFGA 216

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
           F+  LG + G    S+         +    VG+ V+  +L V+ E  RI+LS+KQ+    
Sbjct: 217 FID-LGGVDGLVHVSEISYDHVDKPADVLEVGEDVKVKVLSVDPERERISLSIKQTLPGP 275

Query: 838 TD 839
            D
Sbjct: 276 WD 277



 Score = 48.5 bits (114), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 16/241 (6%)

Query: 521 GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKL-AIL 577
           GV+   P   +++   V    +FK G EL F+++ ++    R+ ++HK+ + +    A  
Sbjct: 135 GVRGFVPASMITDH-YVDDLNQFK-GQELEFKIVEIEPSENRLILSHKEIVQEQHAEAAA 192

Query: 578 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
             + E     +  G + ++   G F+    GV G    SE+  D   +P+ +  VG+ VK
Sbjct: 193 KIFGELAPGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKPADVLEVGEDVK 251

Query: 638 CRIMSSIPASRRINLSFMMKPTRVSEDDLVKL--GSLVSGVVDVVTPNAVVVYVIAKGYS 695
            +++S  P   RI+LS         +D   K   G++++G V  +T     V V      
Sbjct: 252 VKVLSVDPERERISLSIKQTLPGPWDDIESKAPQGTVLTGTVKRLTSFGAFVEVFPG--V 309

Query: 696 KGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD 755
           +G +    ++   +H      V+K G E  Q+ VL+ E+    L      I + Q+ P D
Sbjct: 310 EGLVHISQISH--KHIATPADVLKVGEEV-QVKVLNVEADKQRLGLS---IKALQEAPKD 363

Query: 756 A 756
           A
Sbjct: 364 A 364



 Score = 48.1 bits (113), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 25/180 (13%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD+V G+++++ +   G  + +G  + G VH +E+    V  P    + G+ VK KVL +
Sbjct: 201  GDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEISYDHVDKPADVLEVGEDVKVKVLSV 257

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKNV 1378
                     + LS++ +L                 PG   + IE  +P   ++ G VK +
Sbjct: 258  DPERE---RISLSIKQTL-----------------PGP-WDDIESKAPQGTVLTGTVKRL 296

Query: 1379 TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
            TS G F+ +   ++  V +S +S  ++ +P     +G+ V  +VL+VE   +R+ +++K 
Sbjct: 297  TSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKVGEEVQVKVLNVEADKQRLGLSIKA 356


>gi|284991621|ref|YP_003410175.1| RNA binding S1 domain-containing protein [Geodermatophilus obscurus
            DSM 43160]
 gi|284064866|gb|ADB75804.1| RNA binding S1 domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 488

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 173/372 (46%), Gaps = 47/372 (12%)

Query: 1164 GQRVTGYVYKVDNEWALLTISRH----LKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            G  V G + KVD +  LL I       + ++   +    +P+E+        +G  V   
Sbjct: 39   GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEV------VSVGDEVEAL 92

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
            VL   KE K  RL+L   +        + +   ++      ++V G + +++ G  GL++
Sbjct: 93   VL--QKEDKEGRLILSKKR-----AQYERAWGTIEAKKEADEVVTGTVIEVVKG--GLIL 143

Query: 1280 QIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
             IG   +      E++ +    P  G +    ++ K++E+ +      +V LS R  L+ 
Sbjct: 144  DIGLRGFLPASLVEMRRVRDLQPYVGRE----LEAKIIELDKNRN---NVVLSRRQWLEQ 196

Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
              S   S+              +  L+   +  G V ++ + G F+ L   +D  V +S 
Sbjct: 197  TQSEVRSEF-------------LNKLAKGQVRTGVVSSIVNFGAFVDLG-GVDGLVHVSE 242

Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VG 1458
            LS  +++ P +   +G+ V   VL V+   +RV ++LK +      Q      +  H +G
Sbjct: 243  LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQ-----FARTHQIG 297

Query: 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDK 1518
             +V G++ ++  +G F+ ++   + GL H+SEL+E HV+  E + + G+++ VK++ +D 
Sbjct: 298  QVVPGKVTKLVPFGAFVRVDE-GIEGLVHISELAERHVEIPEQVVQVGDEILVKVIDIDL 356

Query: 1519 EKRRISLGMKSS 1530
            ++RRISL +K +
Sbjct: 357  DRRRISLSLKQA 368



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 152/347 (43%), Gaps = 29/347 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG E+   VL  + 
Sbjct: 39  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVSVGDEVEALVLQKED 98

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     + +  EA D ++T G + ++ K G  +    G++GF P S
Sbjct: 99  KEGRLILSKKRAQYERAWGTIEAKKEA-DEVVT-GTVIEVVKGGLILDI--GLRGFLPAS 154

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R    + + 
Sbjct: 155 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRQWLEQTQSEVRSEFLNKLA 210

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + +GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 211 KGQVRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 264

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D +   + LS K +  +  +Q    A       VV G V  ++  G FVR    + 
Sbjct: 265 VLDVDLDRERVSLSLKATQEDPWRQF---ARTHQIGQVVPGKVTKLVPFGAFVRVDEGIE 321

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
           G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+
Sbjct: 322 GLVHISELAERHVEIPEQVVQVGDEILVKVIDIDLDRRRISLSLKQA 368



 Score = 40.8 bits (94), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 113/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++G+ +   ++ ++K +  + L  R +     ++
Sbjct: 141  LILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRQW----LEQ 196

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T           + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 197  TQSEVRSEFLNKLAKGQVRTGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 253

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++ +                P +   +   
Sbjct: 254  VVEVGQEVTVEVLDVDLDRE---RVSLSLKATQE---------------DPWRQFARTHQ 295

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
            +    +V G V  +   G F+ +   ++  V +S L++ +VE PE+   +G  +  +V+ 
Sbjct: 296  I--GQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEILVKVID 353

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 354  IDLDRRRISLSLKQAN 369


>gi|420190098|ref|ZP_14696042.1| putative ribosomal protein S1 [Staphylococcus epidermidis NIHLM037]
 gi|394258989|gb|EJE03859.1| putative ribosomal protein S1 [Staphylococcus epidermidis NIHLM037]
          Length = 392

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 186/397 (46%), Gaps = 41/397 (10%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            D+  G +VTG V +V+++  ++ I+   K    I  S      ++       +G  V  +
Sbjct: 12   DIKEGDKVTGEVQQVEDKQVVVHINGG-KFNGIIPISQLSTHHIENPNEVVKVGDEVEAY 70

Query: 1220 VLSI--NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
            V  I  ++E      +L   Q        + S + +Q  ++  +++   +++++ G  GL
Sbjct: 71   VTKIEFDEENDTGAYILSKRQ-----LETEKSYEYLQEKLNNDEVIEAEVTEVVKG--GL 123

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1337
            VV +G    G V  + +    + D  S +D GQ ++ KV E            L   ++ 
Sbjct: 124  VVDVGQR--GFVPASLISTDFIED-FSVFD-GQTIRIKVEE------------LDPENNR 167

Query: 1338 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1397
              +S      L  D     K    ++ L+   ++ G V  +T+ G FI +   +D  V +
Sbjct: 168  VILSRKAVEQLEND----AKKASILDSLNEGDVIDGKVARLTNFGAFIDIG-GVDGLVHV 222

Query: 1398 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1457
            S LS  +V++PE+   +G+ V  +V SVE  S+R+ +++K     T      N     H 
Sbjct: 223  SELSHEHVQTPEEVVSVGEAVKIKVKSVEKDSERISLSIKD----TLPTPFENIKGKFHE 278

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
             D++ G + R+ ++G F+ I   ++ GL H+SE+   H+ +   +   G++V VKIL +D
Sbjct: 279  DDVIEGTVVRLANFGAFVEIA-PSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGID 337

Query: 1518 KEKRRISLGMKSSYFK-----NDADNLQMSSEEESDE 1549
            ++  RISL +K++  K     +DA   Q   E+++DE
Sbjct: 338  EDNERISLSIKATLPKENVIESDASTTQSYLEDDNDE 374



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 150/372 (40%), Gaps = 32/372 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           +D+K G  V G+V  V+    +V   GG    + P+  +S   I  P +  KVG E+   
Sbjct: 11  NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPNEVVKVGDEVEAY 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
           V  ++      T    L K +L    SY    ++L    +    +T++ K G  V    G
Sbjct: 71  VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGLVVDV--G 128

Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
            +GF P S +  D   E  S++  GQ ++ ++    P + R+ LS   K     E+D  K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQLENDAKK 184

Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
                    G ++ G V  +T     + +   G   G +    L+   EH    + V+  
Sbjct: 185 ASILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSV 239

Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           G     ++  ++ +S  + LS K +L    + +       H + V+ G V  +   G FV
Sbjct: 240 GEAVKIKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFV 296

Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC----C 835
                + G    S+         ++    GQ V   IL ++ +  RI+LS+K +      
Sbjct: 297 EIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENV 356

Query: 836 SSTDASFMQEHF 847
             +DAS  Q + 
Sbjct: 357 IESDASTTQSYL 368



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 24/251 (9%)

Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
           +++V  V +G GL++D+      P++ +ST      S    + +R K+E+   E + V  
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168

Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
            IL  + +E L     KAS  + L         G V+ GKV  + +FGA +   GGV  L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219

Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
             +  +S   +  P +   VG  +  +V  V+  S+RI+++ K TL      I   + E 
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVKIKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279

Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
               +  G + ++   G FV     VQG    SE+       P+ +   GQ V  +I+  
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336

Query: 644 IPASRRINLSF 654
              + RI+LS 
Sbjct: 337 DEDNERISLSI 347



 Score = 45.1 bits (105), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 114/289 (39%), Gaps = 55/289 (19%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
           +K G  V+G V  V    VVV+ I  G   G IP   L+ H  H      V+K G E + 
Sbjct: 13  IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPNEVVKVGDEVEA 69

Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
            +     D E+     +  Y L  S +QL ++ S+      ++ + V+   V  +++ G 
Sbjct: 70  YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVKGGL 123

Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
            V    R  GF P S        D S   + GQ++R  + +++ E  R+ LS K      
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179

Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
            DA          +K ++L S                G VI+GKV    +FG   +F + 
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFG---AFIDI 213

Query: 898 SDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
             V G +        H Q     V  G  ++  +  V K    + LS+K
Sbjct: 214 GGVDGLVHVSELSHEHVQTPEEVVSVGEAVKIKVKSVEKDSERISLSIK 262


>gi|330836582|ref|YP_004411223.1| RNA binding S1 domain-containing protein [Sphaerochaeta coccoides DSM
            17374]
 gi|329748485|gb|AEC01841.1| RNA binding S1 domain protein [Sphaerochaeta coccoides DSM 17374]
          Length = 571

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 93/160 (58%), Gaps = 7/160 (4%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +VQG VK+ TS G FI L    D  + ++++S G+V  P+     G+ +  R+++++P +
Sbjct: 204  VVQGVVKSFTSFGAFIDLG-GFDGLLHINDMSWGHVTRPKDFVKKGQTIELRLINIDPET 262

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
            ++V ++LK       S  E     N +VGD+V   + ++ ++G FI I    + GL H+S
Sbjct: 263  QKVNLSLKHMHEDPWSSFE----KNFNVGDVVKAPVTKLTTFGAFIEIA-PGIEGLAHIS 317

Query: 1490 ELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            ELS    V+N + +   G+ V+ KIL  D +K+R+SLG+K
Sbjct: 318  ELSWTKRVNNPKDVLDVGDVVEAKILGYDLDKKRVSLGLK 357



 Score = 76.3 bits (186), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 154/352 (43%), Gaps = 27/352 (7%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S V  G VV+G V +  SFGA +   GG   L  +  MS   + +P    K G  +  R+
Sbjct: 197 SSVHIGDVVQGVVKSFTSFGAFIDL-GGFDGLLHINDMSWGHVTRPKDFVKKGQTIELRL 255

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           + +  +++++ ++ K  + +   +         D  +    +TK+   G F+    G++G
Sbjct: 256 INIDPETQKVNLSLKH-MHEDPWSSFEKNFNVGD--VVKAPVTKLTTFGAFIEIAPGIEG 312

Query: 612 FAPRSELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSEDDLVK 668
            A  SEL        P  +  VG VV+ +I+      +R++L    + +    S DD   
Sbjct: 313 LAHISELSWTKRVNNPKDVLDVGDVVEAKILGYDLDKKRVSLGLKQLEENPWDSIDDRYP 372

Query: 669 LG-SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD--HLEHATVMKSVIKPGYEFD 725
           +G +L   VV +    A +      G   G     H+ D    E    M S  K G   D
Sbjct: 373 VGKTLTRPVVKITNSGAFI------GLEDGIDGFLHIDDISWTEKVRNMSSFAKEGDMVD 426

Query: 726 QLLV-LDNESSNLLLSAKYSLINSAQQLPSDASHIHPN-SVVHGYVCNIIETGCFVRFLG 783
            ++  ++ E+  + LS K    N    L  D    +P  S + G V N+ + G FV+ LG
Sbjct: 427 VVVTRVEPENRRIRLSVKQLEDNPWNTLKKD----YPKYSSISGEVTNVTDFGVFVKVLG 482

Query: 784 RLTGFAPRSKAV--DGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
            + G   +   V  D +  D + K + VG  V + ++DVN  T +++LS+K+
Sbjct: 483 GIEGLISKFHLVGPDEEYNDSVLKNFKVGDVVTAAVMDVNPSTQKLSLSIKE 534



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 42/201 (20%)

Query: 1359 LEKIEDL-------SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK- 1410
            LEK EDL       SP   V G    V   G  I L  +      +S      VE PE  
Sbjct: 100  LEKTEDLRKAAEDRSP---VLGKFVKVIKGGYEIDLGGEYRGFCPMSKADVSRVEDPESL 156

Query: 1411 -----EFPIGKLVAGRVLSV-----EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDI 1460
                  F I K  AG  L       E L KR++   +T              S++H+GD+
Sbjct: 157  IGLSDYFIIDKFHAGTKLKSVVSRREYLEKRIKENKETF------------FSSVHIGDV 204

Query: 1461 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK 1520
            V G +K   S+G FI +   +  GL H++++S  HV   +   + G+ ++++++ +D E 
Sbjct: 205  VQGVVKSFTSFGAFIDLGGFD--GLLHINDMSWGHVTRPKDFVKKGQTIELRLINIDPET 262

Query: 1521 RRISLGMK-------SSYFKN 1534
            ++++L +K       SS+ KN
Sbjct: 263  QKVNLSLKHMHEDPWSSFEKN 283



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 152/368 (41%), Gaps = 40/368 (10%)

Query: 481 LKASAFEGLVFTHSD-VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV-K 538
           L  S  E  VF   D ++ G +V G VI V++    V    G K+   +P + EF+++ +
Sbjct: 15  LMESLLEHDVFKSLDEIEDGTLVTGTVIQVNNEYVFVDV--GYKSEGRIP-LDEFDVIPE 71

Query: 539 PGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK 598
            G+K KV    +    G K  +I ++ ++ +   K   L   AE  DR    G   K+ K
Sbjct: 72  DGEKVKV---FIITKDG-KGGQIQISKRRAVTLEKTEDLRKAAE--DRSPVLGKFVKVIK 125

Query: 599 HGCFVRFYNGVQGFAPRSELGLDPGCEPSSM-----------YHVGQVVKCRIMSSIPAS 647
            G  +      +GF P S+  +    +P S+           +H G  +K  +      S
Sbjct: 126 GGYEIDLGGEYRGFCPMSKADVSRVEDPESLIGLSDYFIIDKFHAGTKLKSVV------S 179

Query: 648 RRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD- 706
           RR  L   +K  + +    V +G +V GVV   T     + +   G   G +   H+ D 
Sbjct: 180 RREYLEKRIKENKETFFSSVHIGDVVQGVVKSFTSFGAFIDL---GGFDGLL---HINDM 233

Query: 707 HLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVV 765
              H T  K  +K G   + +L+ +D E+  + LS K+          S   + +   VV
Sbjct: 234 SWGHVTRPKDFVKKGQTIELRLINIDPETQKVNLSLKHM---HEDPWSSFEKNFNVGDVV 290

Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETG 824
              V  +   G F+     + G A  S+    +R +  K    VG  V + IL  + +  
Sbjct: 291 KAPVTKLTTFGAFIEIAPGIEGLAHISELSWTKRVNNPKDVLDVGDVVEAKILGYDLDKK 350

Query: 825 RITLSLKQ 832
           R++L LKQ
Sbjct: 351 RVSLGLKQ 358


>gi|297559937|ref|YP_003678911.1| RNA binding S1 domain-containing protein [Nocardiopsis dassonvillei
            subsp. dassonvillei DSM 43111]
 gi|296844385|gb|ADH66405.1| RNA binding S1 domain protein [Nocardiopsis dassonvillei subsp.
            dassonvillei DSM 43111]
          Length = 496

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 186/397 (46%), Gaps = 53/397 (13%)

Query: 1145 LTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LKAQLFIL 1194
            + V++IGS+  F    D +I     G  V G + KVD +  LL I       + ++   +
Sbjct: 13   VAVNDIGSEEAFLAAIDETIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI 72

Query: 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQ 1254
                +P E+        +G  V   VL   KE K  RL+L   +        + +   ++
Sbjct: 73   KHDVDPGEV------VAVGDQVEALVL--QKEDKEGRLILSKKR-----AQYERAWGTIE 119

Query: 1255 TFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKC 1314
                E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    ++ 
Sbjct: 120  KIKEEDGVVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE----LEA 173

Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
            K++E+ +      +V LS R+ L+    T S    T ++T          L    I +G 
Sbjct: 174  KIIELDKNRN---NVVLSRRAWLE---QTQSEVRQTFLNT----------LQKGQIRKGV 217

Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
            V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+   +RV +
Sbjct: 218  VSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSL 276

Query: 1435 TLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
            +LK +      Q      +  H +G +V G++ ++  +G F+ +E   + GL H+SEL+E
Sbjct: 277  SLKATQEDPWQQ-----FARTHQIGQVVPGKVTKLVPFGAFVRVEE-GIEGLVHISELAE 330

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             HV+  E + + G ++ VKI+ +D ++RRISL +K +
Sbjct: 331  RHVEVPEQVVQVGTEIFVKIIDIDLDRRRISLSLKQA 367



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 153/350 (43%), Gaps = 29/350 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V PG+   VG ++   VL  + 
Sbjct: 38  GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPGEVVAVGDQVEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGTIEKIKE-EDGVVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +  + ++
Sbjct: 154 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLNTLQ 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G +  GVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
           +L +D E   + LS K +  +  QQ    A       VV G V  ++  G FVR    + 
Sbjct: 264 VLDVDMERERVSLSLKATQEDPWQQF---ARTHQIGQVVPGKVTKLVPFGAFVRVEEGIE 320

Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
           G    S+  +       +   VG  +   I+D++ +  RI+LSLKQ+  S
Sbjct: 321 GLVHISELAERHVEVPEQVVQVGTEIFVKIIDIDLDRRRISLSLKQANES 370


>gi|403238099|ref|ZP_10916685.1| 30S ribosomal protein S1 [Bacillus sp. 10403023]
          Length = 378

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 188/390 (48%), Gaps = 42/390 (10%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  +TG V KV+ +   +++          LD     SEL       H+ KA    
Sbjct: 12   ELQVGDVITGKVTKVEEKQVFVSVENSK------LDGIIPISEL----SSLHVEKA--SD 59

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+S  +E +L    +      +S K V  S   D+++   + G++    +  ++ G  GL
Sbjct: 60   VVSEGEELELSVTKVEEEALILSKKAVLASKAWDDLEQKFNTGEVFEAVVKDVVKG--GL 117

Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1337
            VV +G  + G +  + ++N  V D  S Y + + +  KV+E+ R       V LS R+ +
Sbjct: 118  VVDLG--VRGFIPASLVENYYVED-FSDYKD-KALTVKVVELDRE---KNRVILSHRAVV 170

Query: 1338 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1397
            +              +   K    ++ L    +++G V+ +T  G F+ +   +D  V +
Sbjct: 171  EE-------------EQKNKKQHVLDSLQVGAVLEGTVQRLTDFGAFVDIG-GIDGLVHI 216

Query: 1398 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1457
            S LS  +V  P      G+++  +VLSV+  ++R+ +++K     T      N    + V
Sbjct: 217  SQLSHEHVSKPSDVVEEGQVIKVKVLSVDRDNERISLSVK----ETLPGPWENIAEKISV 272

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            GD+V G++KR+ S+G F+ +    + GL H+S++S  H+     + + G++V+VK+L+++
Sbjct: 273  GDVVDGKVKRLVSFGAFVEV-LPGVEGLVHISQISSKHIGTPHEVLKEGQEVQVKVLELN 331

Query: 1518 KEKRRISLGMKSSYFKNDADNLQMSSEEES 1547
            + ++RISL MK      + D  Q   ++E+
Sbjct: 332  ESEKRISLSMKELEVNVEEDYSQYQQQDET 361



 Score = 52.4 bits (124), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 10/170 (5%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V++G V  +  FGA V   GG+  L  +  +S   + KP    + G  +  +VL V  
Sbjct: 188 GAVLEGTVQRLTDFGAFVDI-GGIDGLVHISQLSHEHVSKPSDVVEEGQVIKVKVLSVDR 246

Query: 558 -SKRITVTHKKTLVK--SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
            ++RI+++ K+TL      +A   S  +  D     G + ++   G FV    GV+G   
Sbjct: 247 DNERISLSVKETLPGPWENIAEKISVGDVVD-----GKVKRLVSFGAFVEVLPGVEGLVH 301

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED 664
            S++       P  +   GQ V+ +++    + +RI+LS       V ED
Sbjct: 302 ISQISSKHIGTPHEVLKEGQEVQVKVLELNESEKRISLSMKELEVNVEED 351



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 143/359 (39%), Gaps = 44/359 (12%)

Query: 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           + +++ G V+ GKV  V+     V      +  + P+  +S   + K       G EL  
Sbjct: 10  YKELQVGDVITGKVTKVEEKQVFVSVENSKLDGIIPISELSSLHVEKASDVVSEGEELEL 69

Query: 552 RVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGCFV 603
            V        T   ++ L+ SK A+L+S  +A D L        +    +  + K G  V
Sbjct: 70  SV--------TKVEEEALILSKKAVLAS--KAWDDLEQKFNTGEVFEAVVKDVVKGGLVV 119

Query: 604 RFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663
               GV+GF P S L  +   E  S Y      K   +  +   R  N   +     V E
Sbjct: 120 DL--GVRGFIPAS-LVENYYVEDFSDYKD----KALTVKVVELDREKNRVILSHRAVVEE 172

Query: 664 D---------DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
           +         D +++G+++ G V  +T     V +   G   G +    L+   EH +  
Sbjct: 173 EQKNKKQHVLDSLQVGAVLEGTVQRLTDFGAFVDI---GGIDGLVHISQLSH--EHVSKP 227

Query: 715 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
             V++ G     ++L +D ++  + LS K +L    + +   A  I    VV G V  ++
Sbjct: 228 SDVVEEGQVIKVKVLSVDRDNERISLSVKETLPGPWENI---AEKISVGDVVDGKVKRLV 284

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
             G FV  L  + G    S+          +    GQ V+  +L++N    RI+LS+K+
Sbjct: 285 SFGAFVEVLPGVEGLVHISQISSKHIGTPHEVLKEGQEVQVKVLELNESEKRISLSMKE 343



 Score = 41.2 bits (95), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 111/281 (39%), Gaps = 45/281 (16%)

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFD 725
           +++G +++G V  V    V V V       G IP   L+  H+E A+    V+  G E  
Sbjct: 13  LQVGDVITGKVTKVEEKQVFVSV-ENSKLDGIIPISELSSLHVEKAS---DVVSEGEEL- 67

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           +L V   E   L+LS K  L + A          +   V    V ++++ G  V    R 
Sbjct: 68  ELSVTKVEEEALILSKKAVLASKA--WDDLEQKFNTGEVFEAVVKDVVKGGLVVDLGVR- 124

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
            GF P S   +    D S   Y  +++   +++++ E  R+ LS         +    ++
Sbjct: 125 -GFIPASLVENYYVEDFSD--YKDKALTVKVVELDREKNRVILS--HRAVVEEEQKNKKQ 179

Query: 846 HFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFIT 905
           H L                     +   +G+V+EG V    DFG   +F +   + G + 
Sbjct: 180 HVL---------------------DSLQVGAVLEGTVQRLTDFG---AFVDIGGIDGLVH 215

Query: 906 HHQLA-------GATVESGSVIQAAILDVAKAERLVDLSLK 939
             QL+          VE G VI+  +L V +    + LS+K
Sbjct: 216 ISQLSHEHVSKPSDVVEEGQVIKVKVLSVDRDNERISLSVK 256



 Score = 40.8 bits (94), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 8/135 (5%)

Query: 438 AYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGLVFTHS 494
             V IS ++ E V K     +EG  ++V++L   R  E ++  + +     +E +     
Sbjct: 212 GLVHISQLSHEHVSKPSDVVEEGQVIKVKVLSVDRDNERISLSVKETLPGPWENIA---E 268

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
            +  G VV GKV  + SFGA V+   GV+ L  +  +S   I  P +  K G E+  +VL
Sbjct: 269 KISVGDVVDGKVKRLVSFGAFVEVLPGVEGLVHISQISSKHIGTPHEVLKEGQEVQVKVL 328

Query: 555 GVK--SKRITVTHKK 567
            +    KRI+++ K+
Sbjct: 329 ELNESEKRISLSMKE 343


>gi|332686551|ref|YP_004456325.1| 30S ribosomal protein S1 [Melissococcus plutonius ATCC 35311]
 gi|332370560|dbj|BAK21516.1| SSU ribosomal protein S1p [Melissococcus plutonius ATCC 35311]
          Length = 408

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 143/292 (48%), Gaps = 28/292 (9%)

Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
            GGLVV +G  + G V  + +++  VSD  S Y +G+ +  K++EI  +        LS +
Sbjct: 133  GGLVVDVG--VRGFVPASMVEDHFVSD-FSEY-KGKTLAVKIIEIEPSENRLI---LSHK 185

Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
            + ++              D   K +E ++ L    IV+G +  +T  G FI L   +D  
Sbjct: 186  AVVEN-------------DKAAKKVEIMDHLHAGDIVEGKIARLTDFGAFIDLG-GIDGL 231

Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
            V +S ++  +V+ P     IG+ V  ++LS+ P   R+ +++K     T   +  N    
Sbjct: 232  VHVSEIAHNHVDKPSDTLTIGEDVNVKILSINPDEGRISLSIK----ETLPGAWTNIEEK 287

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
              VG I+ G +KR+ S+G F+ +    + GL H+S++S  H+     +   G+ ++VK+L
Sbjct: 288  APVGSILEGTVKRLTSFGAFVEV-FPGVEGLVHISQISHKHIATPHEVLHEGDDIQVKVL 346

Query: 1515 KVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENS 1566
            +V  E  R++L +K+   +   D+ + S   ES E  EE   +    ++ +S
Sbjct: 347  EVHPEDHRLALSIKA--LETKPDSQRESKNVESYELPEENTGFTMGDIIGDS 396



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 7/172 (4%)

Query: 1360 EKIE-DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLV 1418
            E+IE D     I++  V ++   G  + +  +    V  S + D +V S   E+  GK +
Sbjct: 111  EEIEADFKEERIIEAPVTDIVKGGLVVDVGVR--GFVPASMVEDHFV-SDFSEYK-GKTL 166

Query: 1419 AGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1478
            A +++ +EP   R+ ++ K       +  ++  + +LH GDIV G+I R+  +G FI + 
Sbjct: 167  AVKIIEIEPSENRLILSHKAVVENDKAAKKVEIMDHLHAGDIVEGKIARLTDFGAFIDLG 226

Query: 1479 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
              +  GL HVSE++ +HVD        GE V VKIL ++ ++ RISL +K +
Sbjct: 227  GID--GLVHVSEIAHNHVDKPSDTLTIGEDVNVKILSINPDEGRISLSIKET 276



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 184/426 (43%), Gaps = 67/426 (15%)

Query: 1063 VGSLVQAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
            +G +V+ E+  I+  ++ +   G G  G +   E++   ++ VEN+    KIG  +   +
Sbjct: 28   IGDIVKGEVLAIEDKQIIVGIEGTGIEGIVPAKELS---TSYVENINDFVKIGDKLDLVV 84

Query: 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALL 1181
            I+   K     ++L         L+   + +K ++EE +    +         D     L
Sbjct: 85   ISSIGKDKENGNYL---------LSKRRLDAKKVWEEIEADFKEERIIEAPVTDIVKGGL 135

Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
             +   ++   F+  S  E   + +F    + GK +   ++ I   +   RL+L       
Sbjct: 136  VVDVGVRG--FVPASMVEDHFVSDFSE--YKGKTLAVKIIEIEPSEN--RLIL------- 182

Query: 1242 SDKTVDISND------NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK 1295
            S K V + ND       +   +H GDIV G+I++ L+  G  +   G  + G VH +E+ 
Sbjct: 183  SHKAV-VENDKAAKKVEIMDHLHAGDIVEGKIAR-LTDFGAFIDLGG--IDGLVHVSEIA 238

Query: 1296 NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1355
            +  V  P      G+ V  K+L I+        + LS++ +L G + TN           
Sbjct: 239  HNHVDKPSDTLTIGEDVNVKILSINPD---EGRISLSIKETLPG-AWTN----------- 283

Query: 1356 GKHLEKIEDLSP-NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1414
                  IE+ +P   I++G VK +TS G F+ +   ++  V +S +S  ++ +P +    
Sbjct: 284  ------IEEKAPVGSILEGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLHE 337

Query: 1415 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL---------SNLHVGDIVIGQI 1465
            G  +  +VL V P   R+ +++K  +++  SQ E  N+         +   +GDI+   +
Sbjct: 338  GDDIQVKVLEVHPEDHRLALSIKALETKPDSQRESKNVESYELPEENTGFTMGDIIGDSL 397

Query: 1466 KRVESY 1471
            K  E +
Sbjct: 398  KEQEDH 403



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 155/383 (40%), Gaps = 58/383 (15%)

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFY-NGVQGFAPRSELGLDPGCEPSSMYHVGQV 635
           ++S  E T   I  G +  IE     V     G++G  P  EL        +    +G  
Sbjct: 20  INSVQEVTIGDIVKGEVLAIEDKQIIVGIEGTGIEGIVPAKELSTSYVENINDFVKIGDK 79

Query: 636 VKCRIMSSIPASRRINLSFMMKPTRVS--------EDDLVKLGSLVSGVVDVVTPNAVVV 687
           +   ++SSI   +  N ++++   R+         E D  +   + + V D+V    +VV
Sbjct: 80  LDLVVISSIGKDKE-NGNYLLSKRRLDAKKVWEEIEADFKEERIIEAPVTDIVK-GGLVV 137

Query: 688 YVIAKGYSKGTIPTEH-LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLI 746
            V  +G+   ++  +H ++D  E+     +V        +++ ++   + L+LS K  + 
Sbjct: 138 DVGVRGFVPASMVEDHFVSDFSEYKGKTLAV--------KIIEIEPSENRLILSHKAVVE 189

Query: 747 NS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805
           N  A +      H+H   +V G +  + + G F+  LG + G    S+         S T
Sbjct: 190 NDKAAKKVEIMDHLHAGDIVEGKIARLTDFGAFID-LGGIDGLVHVSEIAHNHVDKPSDT 248

Query: 806 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865
             +G+ V   IL +N + GRI+LS+K++   +           +EEK             
Sbjct: 249 LTIGEDVNVKILSINPDEGRISLSIKETLPGAWTN--------IEEKAP----------- 289

Query: 866 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGF-----ITHHQLAGA--TVESGS 918
                   +GS++EG V     FG  V  E    V G      I+H  +A     +  G 
Sbjct: 290 --------VGSILEGTVKRLTSFGAFV--EVFPGVEGLVHISQISHKHIATPHEVLHEGD 339

Query: 919 VIQAAILDVAKAERLVDLSLKTV 941
            IQ  +L+V   +  + LS+K +
Sbjct: 340 DIQVKVLEVHPEDHRLALSIKAL 362



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+GK+  +  FGA +   GG+  L  +  ++   + KP     +G ++  ++L +  
Sbjct: 206 GDIVEGKIARLTDFGAFIDL-GGIDGLVHVSEIAHNHVDKPSDTLTIGEDVNVKILSINP 264

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
              RI+++ K+TL  +   I       +   I  G + ++   G FV  + GV+G    S
Sbjct: 265 DEGRISLSIKETLPGAWTNIEEKAPVGS---ILEGTVKRLTSFGAFVEVFPGVEGLVHIS 321

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
           ++       P  + H G  ++ +++   P   R+ LS     T+
Sbjct: 322 QISHKHIATPHEVLHEGDDIQVKVLEVHPEDHRLALSIKALETK 365



 Score = 45.1 bits (105), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 140/348 (40%), Gaps = 23/348 (6%)

Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
           +V  G +VKG+V+A++    IV   G G++ + P   +S   +       K+G +L   V
Sbjct: 25  EVTIGDIVKGEVLAIEDKQIIVGIEGTGIEGIVPAKELSTSYVENINDFVKIGDKLDLVV 84

Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
              +G   +       K  + +K       A+  +  I    +T I K G  V    GV+
Sbjct: 85  ISSIGKDKENGNYLLSKRRLDAKKVWEEIEADFKEERIIEAPVTDIVKGGLVVDV--GVR 142

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM------KPTRVSED 664
           GF P S +  D      S Y  G+ +  +I+   P+  R+ LS            +V   
Sbjct: 143 GFVPAS-MVEDHFVSDFSEYK-GKTLAVKIIEIEPSENRLILSHKAVVENDKAAKKVEIM 200

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
           D +  G +V G +  +T     + +   G   G +    +A +  H       +  G + 
Sbjct: 201 DHLHAGDIVEGKIARLTDFGAFIDL---GGIDGLVHVSEIAHN--HVDKPSDTLTIGEDV 255

Query: 725 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
           + ++L ++ +   + LS K +L  +   +   A      S++ G V  +   G FV    
Sbjct: 256 NVKILSINPDEGRISLSIKETLPGAWTNIEEKAP---VGSILEGTVKRLTSFGAFVEVFP 312

Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            + G    S+      A   +  + G  ++  +L+V+ E  R+ LS+K
Sbjct: 313 GVEGLVHISQISHKHIATPHEVLHEGDDIQVKVLEVHPEDHRLALSIK 360



 Score = 43.9 bits (102), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 1437 KTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1495
            K   S  A+  E IN++  + +GDIV G++  +E   + + IE T + G+    ELS  +
Sbjct: 7    KQEKSENATMEEAINSVQEVTIGDIVKGEVLAIEDKQIIVGIEGTGIEGIVPAKELSTSY 66

Query: 1496 VDNIETIYRAGEKVKVKIL 1514
            V+NI    + G+K+ + ++
Sbjct: 67   VENINDFVKIGDKLDLVVI 85


>gi|139437094|ref|ZP_01771254.1| Hypothetical protein COLAER_00232 [Collinsella aerofaciens ATCC
            25986]
 gi|133776741|gb|EBA40561.1| 30S ribosomal protein S1 [Collinsella aerofaciens ATCC 25986]
          Length = 369

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 133/273 (48%), Gaps = 32/273 (11%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            G+ V G + +++ G  GL++ IG   +      +L+ +     L+ Y  G  ++ +V+E+
Sbjct: 102  GENVEGEVIEVVKG--GLILDIGLRGFLPASLVDLRRV---KDLTSY-MGTRIEARVIEM 155

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
             R      +V LS R  L+       S++             +  L   M +QG V ++ 
Sbjct: 156  DRN---RNNVVLSRRVVLEESRKAERSEI-------------LSKLKSGMRLQGTVSSIV 199

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-- 1437
              G F+ L   +D  + +S LS  +V  P +   +G+ V   VL V+   +R+ + LK  
Sbjct: 200  DFGAFVDLG-GIDGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRERISLGLKQT 258

Query: 1438 TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD 1497
            T D   A       +    VG IV G + ++  +G F+ +    + GL H+SE++  HVD
Sbjct: 259  TEDPWRAL------VKKYPVGAIVEGTVTKLVPFGAFVDL-GEGIEGLVHISEMANKHVD 311

Query: 1498 NIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
                +   G+KV+VK++++D ++RRISL MKS+
Sbjct: 312  QPSQVTHVGDKVQVKVMEIDLDRRRISLSMKSA 344



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K GM ++G V ++  FGA V   GG+  L  +  +S   +  P +  KVG E+   V
Sbjct: 183 SKLKSGMRLQGTVSSIVDFGAFVDL-GGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEV 241

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V    +RI++  K+T      A++  Y       I  G +TK+   G FV    G++G
Sbjct: 242 LDVDLNRERISLGLKQTTEDPWRALVKKYPVGA---IVEGTVTKLVPFGAFVDLGEGIEG 298

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
               SE+      +PS + HVG  V+ ++M      RRI+LS 
Sbjct: 299 LVHISEMANKHVDQPSQVTHVGDKVQVKVMEIDLDRRRISLSM 341



 Score = 43.5 bits (101), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 75/362 (20%), Positives = 152/362 (41%), Gaps = 43/362 (11%)

Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
           T +D   G +V G V+ ++    +V      + + P+  +S  +   P     +G  +  
Sbjct: 8   TITDFDEGDLVNGTVVKIEHDEVLVDIGFKSEGVIPVRELSIRKDANPADIVALGDPIEA 67

Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRL--------ITHGWITKIEKHGC 601
            VL  + K  R+ ++ K+          + Y  A +R+           G + ++ K G 
Sbjct: 68  LVLQKEDKDGRLVLSKKR----------AEYERAWNRIEEKFNSGENVEGEVIEVVKGGL 117

Query: 602 FVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFM 655
            +    G++GF P S + L    + +S  ++G  ++ R++      +++  SRR+ L   
Sbjct: 118 ILDI--GLRGFLPASLVDLRRVKDLTS--YMGTRIEARVIEMDRNRNNVVLSRRVVLEES 173

Query: 656 MKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVM 714
            K  R      +K G  + G V  +      V +   G   G I    L+ +H+ H +  
Sbjct: 174 RKAERSEILSKLKSGMRLQGTVSSIVDFGAFVDL---GGIDGLIHISELSWNHVNHPS-- 228

Query: 715 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNI 772
             V+K G E + ++L +D     + L  K +  +  + L       +P  ++V G V  +
Sbjct: 229 -EVVKVGQEVEVEVLDVDLNRERISLGLKQTTEDPWRALVKK----YPVGAIVEGTVTKL 283

Query: 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
           +  G FV     + G    S+  +      S+  +VG  V+  +++++ +  RI+LS+K 
Sbjct: 284 VPFGAFVDLGEGIEGLVHISEMANKHVDQPSQVTHVGDKVQVKVMEIDLDRRRISLSMKS 343

Query: 833 SC 834
           + 
Sbjct: 344 AA 345


>gi|256394808|ref|YP_003116372.1| 30S ribosomal protein S1 [Catenulispora acidiphila DSM 44928]
 gi|256361034|gb|ACU74531.1| RNA binding S1 domain protein [Catenulispora acidiphila DSM 44928]
          Length = 493

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 186/405 (45%), Gaps = 57/405 (14%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            + +   + +++IGS   F    D++I     G  V G + KVD +  LL I       + 
Sbjct: 7    TARTPQVAINDIGSAEEFLAAIDLTIKYFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVIP 66

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHV--LSINKEKKLLRLVLRPFQDGISDKTV 1246
            ++   +    +P+E+           AV  H+  L + KE K  RL+L   +        
Sbjct: 67   SRELSIKHDVDPNEV----------VAVGDHIEALVLQKEDKEGRLILSKKR-----AQY 111

Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
            + +   ++    +  IV G + +++ G  GL++ IG   +      E++ +    P  G 
Sbjct: 112  ERAWGTIEEIKEKDGIVTGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGK 169

Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
            +    ++ K++E+ +      +V LS R+ L+   S    +  T              L 
Sbjct: 170  E----LEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRQNFLTT-------------LQ 209

Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
               +  G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+
Sbjct: 210  KGQVRSGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVD 268

Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGL 1485
               +RV ++LK +      +      +  H +G +V G++ ++  +G F+ ++   + GL
Sbjct: 269  MDRERVSLSLKAT-----MEDPWQTFARTHAIGQVVPGKVTKLVPFGAFVRVDE-GIEGL 322

Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
             H+SEL+E HV+  E +   G+++ VK++ +D ++RRISL +K +
Sbjct: 323  VHISELAERHVEVPEQVVNVGDEIFVKVIDIDLDRRRISLSLKQA 367



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 115/256 (44%), Gaps = 34/256 (13%)

Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
             ILD     + P+ L E +R    + ++GK +   ++ ++K +  + L  R + +    +
Sbjct: 140  LILDIGLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLE----Q 195

Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
            T      N  T + +G +  G +S I++   G  V +G  + G VH +EL    +  P  
Sbjct: 196  TQSEVRQNFLTTLQKGQVRSGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 252

Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
              + GQ V  +VL++         V LSL+++++    T +   +     PGK       
Sbjct: 253  VVEVGQEVTVEVLDVDMDRE---RVSLSLKATMEDPWQTFARTHAIGQVVPGK------- 302

Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
                      V  +   G F+ +   ++  V +S L++ +VE PE+   +G  +  +V+ 
Sbjct: 303  ----------VTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPEQVVNVGDEIFVKVID 352

Query: 1425 VEPLSKRVEVTLKTSD 1440
            ++   +R+ ++LK ++
Sbjct: 353  IDLDRRRISLSLKQAN 368



 Score = 47.4 bits (111), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 151/348 (43%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G ++ VD    ++      + + P   +S    V P +   VG  +   VL  + 
Sbjct: 38  GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVAVGDHIEALVLQKED 97

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 98  KEGRLILSKKRAQYERAWGTIEEIKE-KDGIVT-GTVIEVVKGGLILDI--GLRGFLPAS 153

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 154 LVEMRRVRDLQP----YVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQNFLTTLQ 209

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
            G + SGVV  +      V +   G   G +    L+  H++H +    V++ G E   +
Sbjct: 210 KGQVRSGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVEVGQEVTVE 263

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +L +D +   + LS K ++ +  Q      +  H    VV G V  ++  G FVR    +
Sbjct: 264 VLDVDMDRERVSLSLKATMEDPWQTF----ARTHAIGQVVPGKVTKLVPFGAFVRVDEGI 319

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+  +       +   VG  +   ++D++ +  RI+LSLKQ+
Sbjct: 320 EGLVHISELAERHVEVPEQVVNVGDEIFVKVIDIDLDRRRISLSLKQA 367


>gi|313143833|ref|ZP_07806026.1| 30S ribosomal protein S1 [Helicobacter cinaedi CCUG 18818]
 gi|313128864|gb|EFR46481.1| 30S ribosomal protein S1 [Helicobacter cinaedi CCUG 18818]
 gi|396078550|dbj|BAM31926.1| 30S ribosomal protein S1 [Helicobacter cinaedi ATCC BAA-847]
          Length = 550

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 148/319 (46%), Gaps = 36/319 (11%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT-FIHEGDIVGGRISKI 1270
            IGK     +++++KE   + +  + F +       D++  NM + F+    +  G ++KI
Sbjct: 155  IGKTYKVAIVNLDKENNSIVVSRKRFFE-----LDDVNRQNMSSKFLENDGVQNGVVAKI 209

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                 G+ V IG  + G VH+TEL +    +P   + EG  V  KVL      R      
Sbjct: 210  APF--GIFVDIGG-IEGLVHYTELSHKGPVNPAKNFKEGDAVVVKVLGYDEKKR-----R 261

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            LSL     G             D P K +EK  +L     ++  V N+ + G F+ L   
Sbjct: 262  LSLSMKALG-------------DDPWKEIEK--ELEVGYAIKVSVSNIEAYGAFVDLGND 306

Query: 1391 LDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
            ++  + +S +S D  ++ P +   +G+ +   ++ ++  SKR+ V+LK    R   +   
Sbjct: 307  IEGFLHISEISWDKNIKHPSQYLSVGQEIDVEIIEIDTESKRLRVSLK----RLLDKPFA 362

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
                   VG+++ G+I  +  +G F+ ++  +  GL H  +   D     +  ++ G+++
Sbjct: 363  KFAKTHQVGEVIKGKIATLTDFGAFVKLDGVD--GLLHNEDAFWDKELKCKNEFKVGDEI 420

Query: 1510 KVKILKVDKEKRRISLGMK 1528
            +VKI+K+DKE  RISL  K
Sbjct: 421  EVKIIKIDKENERISLSKK 439



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 142/352 (40%), Gaps = 51/352 (14%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
           V  G V  +  FG  V   GG++ L     +S    V P K FK G  +V +VLG   K 
Sbjct: 201 VQNGVVAKIAPFGIFVDI-GGIEGLVHYTELSHKGPVNPAKNFKEGDAVVVKVLGYDEK- 258

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGW-----ITKIEKHGCFVRFYNGVQGFAPR 615
                K+ L  S  A+     +  ++ +  G+     ++ IE +G FV   N ++GF   
Sbjct: 259 -----KRRLSLSMKALGDDPWKEIEKELEVGYAIKVSVSNIEAYGAFVDLGNDIEGFLHI 313

Query: 616 SELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK------ 668
           SE+  D   + PS    VGQ +   I+     S+R+ +S      R+ +    K      
Sbjct: 314 SEISWDKNIKHPSQYLSVGQEIDVEIIEIDTESKRLRVSL----KRLLDKPFAKFAKTHQ 369

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL-EHATVMKSVIKPGYEFD-Q 726
           +G ++ G +  +T     V +       G     H  D   +     K+  K G E + +
Sbjct: 370 VGEVIKGKIATLTDFGAFVKL------DGVDGLLHNEDAFWDKELKCKNEFKVGDEIEVK 423

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF----- 781
           ++ +D E+  + LS K    + A++    A     + VV+  V ++ + G FV+      
Sbjct: 424 IIKIDKENERISLSKKLLDHSPAKEF---AKTHKVDDVVNAKVIDVKDFGVFVKIDEMEA 480

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYV-GQSVRSNILDVNSETGRITLSLKQ 832
           L R     P           L K   V GQ +   I  ++ E  ++  S+K+
Sbjct: 481 LIRNDDIYP-----------LKKDEIVSGQEIECVITHIDEENNKVRASIKR 521



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 11/204 (5%)

Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
           K +KEG  V V++LG+   +   +  +KA   +       +++ G  +K  V  ++++GA
Sbjct: 240 KNFKEGDAVVVKVLGYDEKKRRLSLSMKALGDDPWKEIEKELEVGYAIKVSVSNIEAYGA 299

Query: 515 IVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
            V     ++    +  +S +  I  P +   VG E+   ++ +  +SKR+ V+ K+ L K
Sbjct: 300 FVDLGNDIEGFLHISEISWDKNIKHPSQYLSVGQEIDVEIIEIDTESKRLRVSLKRLLDK 359

Query: 572 --SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
             +K A      E     +  G I  +   G FV+  +GV G     +   D   +  + 
Sbjct: 360 PFAKFAKTHQVGE-----VIKGKIATLTDFGAFVKL-DGVDGLLHNEDAFWDKELKCKNE 413

Query: 630 YHVGQVVKCRIMSSIPASRRINLS 653
           + VG  ++ +I+     + RI+LS
Sbjct: 414 FKVGDEIEVKIIKIDKENERISLS 437



 Score = 43.9 bits (102), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            G + ++  +G+F+ I    + GL H +ELS     N    ++ G+ V VK+L  D++KRR
Sbjct: 204  GVVAKIAPFGIFVDI--GGIEGLVHYTELSHKGPVNPAKNFKEGDAVVVKVLGYDEKKRR 261

Query: 1523 ISLGMKS 1529
            +SL MK+
Sbjct: 262  LSLSMKA 268



 Score = 40.8 bits (94), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 148/347 (42%), Gaps = 56/347 (16%)

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            + F  G AV   VL  +++K+ L L ++   D   D   +I  +     +  G  +   +
Sbjct: 240  KNFKEGDAVVVKVLGYDEKKRRLSLSMKALGD---DPWKEIEKE-----LEVGYAIKVSV 291

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
            S I +   G  V +G  + G +H +E+   KNI    P      GQ +  +++EI    +
Sbjct: 292  SNIEAY--GAFVDLGNDIEGFLHISEISWDKNI--KHPSQYLSVGQEIDVEIIEIDTESK 347

Query: 1325 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1384
                    LR SL  +           +D P     K   +    +++G +  +T  G F
Sbjct: 348  -------RLRVSLKRL-----------LDKPFAKFAKTHQVGE--VIKGKIATLTDFGAF 387

Query: 1385 IMLSRKLDAKVLLSNLSDGYVESPEK---EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            +    KLD    L +  D + +   K   EF +G  +  +++ ++  ++R+ ++ K  D 
Sbjct: 388  V----KLDGVDGLLHNEDAFWDKELKCKNEFKVGDEIEVKIIKIDKENERISLSKKLLDH 443

Query: 1442 RTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN-LVGLCHVSELSEDHVDNI 1499
              A +      +  H V D+V  ++  V+ +G+F+ I+    L+    +  L +D +   
Sbjct: 444  SPAKE-----FAKTHKVDDVVNAKVIDVKDFGVFVKIDEMEALIRNDDIYPLKKDEI--- 495

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
                 +G++++  I  +D+E  ++   +K    + + + L+  + EE
Sbjct: 496  ----VSGQEIECVITHIDEENNKVRASIKRLERQKEKETLKAFNAEE 538


>gi|373856650|ref|ZP_09599394.1| RNA binding S1 domain protein [Bacillus sp. 1NLA3E]
 gi|372453629|gb|EHP27096.1| RNA binding S1 domain protein [Bacillus sp. 1NLA3E]
          Length = 379

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 176/402 (43%), Gaps = 60/402 (14%)

Query: 1157 EECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAV 1216
            E  +  +G +V G V KV+ +  L+ I          LD     SEL       H+ KA 
Sbjct: 9    EVSNFEVGDKVKGQVTKVEEKQVLVNIENSK------LDGIIPISEL----SSLHVEKAS 58

Query: 1217 TG---------HVLSINKEKKLLRLVLRPFQDGISDKTVDISN--DNMQTFIHEGDIVGG 1265
                        V+ + +E  +L           S + VD     D+++   + G++   
Sbjct: 59   DAVAEGDDLDLEVIKVEEEALIL-----------SKRKVDAEKAWDDLEAKFNSGEVFEA 107

Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRG 1325
             I  ++ G  GLVV +G  + G V  + ++   V D  S Y +GQ +  K++E+ +    
Sbjct: 108  EIKDVVKG--GLVVDLG--VRGFVPASLVEAFFVED-FSDY-KGQSLAFKIVELDKEKNR 161

Query: 1326 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1385
                 LS R  ++        +L             I+ L    +++G V+ +T  G F+
Sbjct: 162  LI---LSHRIVVEEQKGKQKQNL-------------IDSLEAGQVIEGTVQRITDFGAFV 205

Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1445
             +   +D  V +S LS  +V+ P      G+ V  +VLSV+  + R+ +++K     T  
Sbjct: 206  DIG-GVDGLVHISQLSHQHVDKPSDVVQEGQSVQVKVLSVDRDNDRISLSIKD----TLP 260

Query: 1446 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRA 1505
                N       G  + G +KR+ SYG F+ +    + GL H+S++S  H+     + + 
Sbjct: 261  GPWTNIAEKAPKGSTLTGVVKRIVSYGAFVEV-FPGVEGLVHISQISHKHIATPHEVLKE 319

Query: 1506 GEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1547
            G++V+VK+L+V ++ +R+S+ +K    K D  N      EES
Sbjct: 320  GQEVQVKVLEVSEQDQRLSISIKELLEKEDDQNFDYELPEES 361



 Score = 48.9 bits (115), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 148/361 (40%), Gaps = 30/361 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
           S+ + G  VKG+V  V+    +V      +  + P+  +S   + K       G +L   
Sbjct: 11  SNFEVGDKVKGQVTKVEEKQVLVNIENSKLDGIIPISELSSLHVEKASDAVAEGDDLDLE 70

Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
           V+ V+ + + ++ +K  V ++ A     A+     +    I  + K G  V    GV+GF
Sbjct: 71  VIKVEEEALILSKRK--VDAEKAWDDLEAKFNSGEVFEAEIKDVVKGGLVVDL--GVRGF 126

Query: 613 APRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDL 666
            P S L      E  S Y  GQ +  +I+      + +  S RI +       + +  D 
Sbjct: 127 VPAS-LVEAFFVEDFSDYK-GQSLAFKIVELDKEKNRLILSHRIVVEEQKGKQKQNLIDS 184

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD- 725
           ++ G ++ G V  +T     V +   G   G +    L+   +H      V++ G     
Sbjct: 185 LEAGQVIEGTVQRITDFGAFVDI---GGVDGLVHISQLSH--QHVDKPSDVVQEGQSVQV 239

Query: 726 QLLVLDNESSNLLLSAKYSL----INSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
           ++L +D ++  + LS K +L     N A++ P         S + G V  I+  G FV  
Sbjct: 240 KVLSVDRDNDRISLSIKDTLPGPWTNIAEKAPK-------GSTLTGVVKRIVSYGAFVEV 292

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
              + G    S+      A   +    GQ V+  +L+V+ +  R+++S+K+      D +
Sbjct: 293 FPGVEGLVHISQISHKHIATPHEVLKEGQEVQVKVLEVSEQDQRLSISIKELLEKEDDQN 352

Query: 842 F 842
           F
Sbjct: 353 F 353


>gi|386761960|ref|YP_006235595.1| 30S ribosomal protein S1 [Helicobacter cinaedi PAGU611]
 gi|385146976|dbj|BAM12484.1| 30S ribosomal protein S1 [Helicobacter cinaedi PAGU611]
          Length = 550

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 148/319 (46%), Gaps = 36/319 (11%)

Query: 1212 IGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQT-FIHEGDIVGGRISKI 1270
            IGK     +++++KE   + +  + F +       D++  NM + F+    +  G ++KI
Sbjct: 155  IGKTYKVAIVNLDKENNSIVVSRKRFFE-----LDDVNRQNMSSKFLENDGVQNGVVAKI 209

Query: 1271 LSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
                 G+ V IG  + G VH+TEL +    +P   + EG  V  KVL      R      
Sbjct: 210  APF--GIFVDIGG-IEGLVHYTELSHKGPVNPAKNFKEGDAVVVKVLGYDEKKR-----R 261

Query: 1331 LSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRK 1390
            LSL     G             D P K +EK  +L     ++  V N+ + G F+ L   
Sbjct: 262  LSLSMKALG-------------DDPWKEIEK--ELEVGYAIKVSVSNIEAYGAFVDLGND 306

Query: 1391 LDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
            ++  + +S +S D  ++ P +   +G+ +   ++ ++  SKR+ V+LK    R   +   
Sbjct: 307  IEGFLHISEISWDKNIKHPSQYLSVGQEIDVEIIEIDTESKRLRVSLK----RLLDKPFA 362

Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
                   VG+++ G+I  +  +G F+ ++  +  GL H  +   D     +  ++ G+++
Sbjct: 363  KFAKTHQVGEVIKGKIATLTDFGAFVKLDGVD--GLLHNEDAFWDKELKCKNEFKVGDEI 420

Query: 1510 KVKILKVDKEKRRISLGMK 1528
            +VKI+K+DKE  RISL  K
Sbjct: 421  EVKIIKIDKENERISLSKK 439



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 142/352 (40%), Gaps = 51/352 (14%)

Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKR 560
           V  G V  +  FG  V   GG++ L     +S    V P K FK G  +V +VLG   K 
Sbjct: 201 VQNGVVAKIAPFGIFVDI-GGIEGLVHYTELSHKGPVNPAKNFKEGDAVVVKVLGYDEK- 258

Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGW-----ITKIEKHGCFVRFYNGVQGFAPR 615
                K+ L  S  A+     +  ++ +  G+     ++ IE +G FV   N ++GF   
Sbjct: 259 -----KRRLSLSMKALGDDPWKEIEKELEVGYAIKVSVSNIEAYGAFVDLGNDIEGFLHI 313

Query: 616 SELGLDPGCE-PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK------ 668
           SE+  D   + PS    VGQ +   I+     S+R+ +S      R+ +    K      
Sbjct: 314 SEISWDKNIKHPSQYLSVGQEIDVEIIEIDTESKRLRVSL----KRLLDKPFAKFAKTHQ 369

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL-EHATVMKSVIKPGYEFD-Q 726
           +G ++ G +  +T     V +       G     H  D   +     K+  K G E + +
Sbjct: 370 VGEVIKGKIATLTDFGAFVKL------DGVDGLLHNEDAFWDKELKCKNEFKVGDEIEVK 423

Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF----- 781
           ++ +D E+  + LS K    + A++    A     + VV+  V ++ + G FV+      
Sbjct: 424 IIKIDKENERISLSKKLLDHSPAKEF---AKTHKVDDVVNAKVIDVKDFGVFVKIDEMEA 480

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYV-GQSVRSNILDVNSETGRITLSLKQ 832
           L R     P           L K   V GQ +   I  ++ E  ++  S+K+
Sbjct: 481 LIRNDDIYP-----------LKKDEIVSGQEIECVITHIDEENNKVRASIKR 521



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 11/204 (5%)

Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
           K +KEG  V V++LG+   +   +  +KA   +       +++ G  +K  V  ++++GA
Sbjct: 240 KNFKEGDAVVVKVLGYDEKKRRLSLSMKALGDDPWKEIEKELEVGYAIKVSVSNIEAYGA 299

Query: 515 IVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVK 571
            V     ++    +  +S +  I  P +   VG E+   ++ +  +SKR+ V+ K+ L K
Sbjct: 300 FVDLGNDIEGFLHISEISWDKNIKHPSQYLSVGQEIDVEIIEIDTESKRLRVSLKRLLDK 359

Query: 572 --SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
             +K A      E     +  G I  +   G FV+  +GV G     +   D   +  + 
Sbjct: 360 PFAKFAKTHQVGE-----VIKGKIATLTDFGAFVKL-DGVDGLLHNEDAFWDKELKCKNE 413

Query: 630 YHVGQVVKCRIMSSIPASRRINLS 653
           + VG  ++ +I+     + RI+LS
Sbjct: 414 FKVGDEIEVKIIKIDKENERISLS 437



 Score = 43.9 bits (102), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
            G + ++  +G+F+ I    + GL H +ELS     N    ++ G+ V VK+L  D++KRR
Sbjct: 204  GVVAKIAPFGIFVDI--GGIEGLVHYTELSHKGPVNPAKNFKEGDAVVVKVLGYDEKKRR 261

Query: 1523 ISLGMKS 1529
            +SL MK+
Sbjct: 262  LSLSMKA 268



 Score = 40.8 bits (94), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 148/347 (42%), Gaps = 56/347 (16%)

Query: 1208 RRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRI 1267
            + F  G AV   VL  +++K+ L L ++   D   D   +I  +     +  G  +   +
Sbjct: 240  KNFKEGDAVVVKVLGYDEKKRRLSLSMKALGD---DPWKEIEKE-----LEVGYAIKVSV 291

Query: 1268 SKILSGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVR 1324
            S I +   G  V +G  + G +H +E+   KNI    P      GQ +  +++EI    +
Sbjct: 292  SNIEAY--GAFVDLGNDIEGFLHISEISWDKNI--KHPSQYLSVGQEIDVEIIEIDTESK 347

Query: 1325 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCF 1384
                    LR SL  +           +D P     K   +    +++G +  +T  G F
Sbjct: 348  -------RLRVSLKRL-----------LDKPFAKFAKTHQVGE--VIKGKIATLTDFGAF 387

Query: 1385 IMLSRKLDAKVLLSNLSDGYVESPEK---EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
            +    KLD    L +  D + +   K   EF +G  +  +++ ++  ++R+ ++ K  D 
Sbjct: 388  V----KLDGVDGLLHNEDAFWDKELKCKNEFKVGDEIEVKIIKIDKENERISLSKKLLDH 443

Query: 1442 RTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTN-LVGLCHVSELSEDHVDNI 1499
              A +      +  H V D+V  ++  V+ +G+F+ I+    L+    +  L +D +   
Sbjct: 444  SPAKE-----FAKTHKVDDVVNAKVIDVKDFGVFVKIDEMEALIRNDDIYPLKKDEI--- 495

Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
                 +G++++  I  +D+E  ++   +K    + + + L+  + EE
Sbjct: 496  ----VSGQEIECVITHIDEENNKVRASIKRLERQKEKETLKAFNAEE 538


>gi|331002422|ref|ZP_08325940.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330410238|gb|EGG89672.1| hypothetical protein HMPREF0491_00802 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 368

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 181/383 (47%), Gaps = 61/383 (15%)

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1259
            L E  +  H G+ V G V+ + +++ +L +  +   DGI  ++ + SNDN   ++T ++ 
Sbjct: 10   LDESFKTLHTGEVVNGKVIDVKEDQIILNVGFKS--DGIITRS-EYSNDNSLDLRTVVNV 66

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD +  ++ KI  G G +++      Y R+   +  N  + D  + +   + +  KV+++
Sbjct: 67   GDDMEAKVLKINDGEGQVLLS-----YKRLA-QDRGNKKLEDAFNNH---EVLTGKVIQV 117

Query: 1320 SRTVRGTFHV-----ELSLRSSLDGMSSTNSSDLSTDVDTP------------------- 1355
               V G   V      + + +SL  +S T   DLS   DT                    
Sbjct: 118  ---VEGGLSVVVEDARVFIPASL--VSDTFERDLSKYKDTEIEFVITEFNPKRRRIIGDR 172

Query: 1356 -----GKHLEK----IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
                  K  E+     E ++P  +++G VKNVT  G F+ L    D  + +S +S G VE
Sbjct: 173  KQLLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVDLG-GADGLLHISEMSWGRVE 231

Query: 1407 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
            +P+K F  G+ V   +  +    +++ +++K  D      +E         G++V G++ 
Sbjct: 232  NPKKVFKSGETVTAFIKDIS--GEKIALSMKFPDQNPWLDAE----EKFARGNVVKGRVA 285

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
            R+  +G F+ I N  +  L HVS++S DHV+    + + G++V+  I++ ++  ++ISL 
Sbjct: 286  RMTDFGAFVEISN-GVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKKISLS 344

Query: 1527 MKSSYFKNDADNLQMSSEEESDE 1549
            +K+    N+    + +   ES+E
Sbjct: 345  IKALTQANEELEKENARNSESEE 367



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 17/244 (6%)

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSCVRVRILG 469
           KV++V  G GL + +    V  PA + +SD  E ++ K     +E    E +  R RI+G
Sbjct: 113 KVIQVVEG-GLSVVVEDARVFIPASL-VSDTFERDLSKYKDTEIEFVITEFNPKRRRIIG 170

Query: 470 FRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLP 529
            R        +L A   E        + PG V++G V  V  FGA V   GG   L  + 
Sbjct: 171 DRK------QLLVAKKEEQKKALFEKITPGDVIEGTVKNVTDFGAFVDL-GGADGLLHIS 223

Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLIT 589
            MS   +  P K FK G  +   +  +  ++I ++ K       L     +A      + 
Sbjct: 224 EMSWGRVENPKKVFKSGETVTAFIKDISGEKIALSMKFPDQNPWLDAEEKFARGN---VV 280

Query: 590 HGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649
            G + ++   G FV   NGV      S++  D   +PS +  VG  V+  I+    A ++
Sbjct: 281 KGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKK 340

Query: 650 INLS 653
           I+LS
Sbjct: 341 ISLS 344



 Score = 44.7 bits (104), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 35/188 (18%)

Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
           I P  V+ G V N+ + G FV  LG   G    S+   G+  +  K +  G++V + I D
Sbjct: 191 ITPGDVIEGTVKNVTDFGAFVD-LGGADGLLHISEMSWGRVENPKKVFKSGETVTAFIKD 249

Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
           ++ E  +I LS+K          F  ++  L+ +                 E F  G+V+
Sbjct: 250 ISGE--KIALSMK----------FPDQNPWLDAE-----------------EKFARGNVV 280

Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 933
           +G+V    DFG  V      D    ++     H +     ++ G  ++A I++  +A++ 
Sbjct: 281 KGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEADKK 340

Query: 934 VDLSLKTV 941
           + LS+K +
Sbjct: 341 ISLSIKAL 348


>gi|47565960|ref|ZP_00236998.1| ribosomal protein S1 [Bacillus cereus G9241]
 gi|47556877|gb|EAL15207.1| ribosomal protein S1 [Bacillus cereus G9241]
          Length = 382

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 172/383 (44%), Gaps = 53/383 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQILELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R           
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDREKNRVI----- 164

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
                   +S     +L  D     K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 165  -------LSHKAVVELELD----SKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKND 1535
            +L+V   ++RISL +K +  +N+
Sbjct: 328  VLEVHVAEKRISLSIKEALEENN 350


>gi|258653204|ref|YP_003202360.1| 30S ribosomal protein S1 [Nakamurella multipartita DSM 44233]
 gi|258556429|gb|ACV79371.1| RNA binding S1 domain protein [Nakamurella multipartita DSM 44233]
          Length = 485

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 195/428 (45%), Gaps = 60/428 (14%)

Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
            ++    + +++IGS   F    D +I     G  V G + KVD +  LL I       + 
Sbjct: 5    TVAAPQVAINDIGSAEDFLAAIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64

Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
            ++   +    +PSE+ E      IG+ V   VL   KE K  RL+L   +        + 
Sbjct: 65   SRELSIKHDVDPSEVVE------IGEHVEALVL--QKEDKEGRLILSKKR-----AQYER 111

Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
            +   ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G   
Sbjct: 112  AWGTIEKIKEEDGVVSGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVG--- 166

Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
             + +  K++E+ +      +V LS R  L+   S   S+              +  L   
Sbjct: 167  -RQLDAKIIELDKNRN---NVVLSRRQWLEQTQSEVRSEF-------------LNQLGKG 209

Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
             + +G V ++ + G F+ L   +D  V +S LS  +++ P +   +G+ V   VL V+  
Sbjct: 210  QVRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMD 268

Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
             +RV ++LK +      +    + +  H +G +V G++ ++  +G F+ + +  + GL H
Sbjct: 269  RERVSLSLKAT-----QEDPWRHFARTHAIGQVVPGKVTKLVPFGAFVRVYD-GIEGLVH 322

Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1547
            +SEL+  HV+  E +    +++ V+++ +D E+RRISL +K +       N  +++E E 
Sbjct: 323  ISELAGRHVEVPEQVVTVDDEIFVRVIDIDLERRRISLSLKQA-------NEGITAETEF 375

Query: 1548 DEAIEEVG 1555
            D+   + G
Sbjct: 376  DDVRAQYG 383



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 6/158 (3%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
           G V KG V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL V  
Sbjct: 209 GQVRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDM 267

Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
             +R++++ K T          ++A      +  G +TK+   G FVR Y+G++G    S
Sbjct: 268 DRERVSLSLKATQEDPWRHFARTHAIGQ---VVPGKVTKLVPFGAFVRVYDGIEGLVHIS 324

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
           EL       P  +  V   +  R++      RRI+LS 
Sbjct: 325 ELAGRHVEVPEQVVTVDDEIFVRVIDIDLERRRISLSL 362



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 149/377 (39%), Gaps = 50/377 (13%)

Query: 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQ 634
           AI S+     D  I  G I K+++    +      +G  P  EL +    +PS +  +G+
Sbjct: 25  AIDSTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVEIGE 84

Query: 635 VVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL---GSLVSGVVDVVTPNAVVVYVIA 691
            V+  ++       R+ LS        +   + K+     +VSG V  V    +++ +  
Sbjct: 85  HVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVSGTVIEVVKGGLILDIGL 144

Query: 692 KGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQ 750
           +G+   ++        +E   V       G + D +++ LD   +N++LS +  L  +  
Sbjct: 145 RGFLPASL--------VEMRRVRDLQPYVGRQLDAKIIELDKNRNNVVLSRRQWLEQTQS 196

Query: 751 QLPSD-ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
           ++ S+  + +    V  G V +I+  G FV  LG + G    S+         S+   VG
Sbjct: 197 EVRSEFLNQLGKGQVRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVEVG 255

Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
           Q V   +LDV+ +  R++LSLK +        F + H                       
Sbjct: 256 QEVTVEVLDVDMDRERVSLSLK-ATQEDPWRHFARTH----------------------- 291

Query: 870 EGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAA------ 923
               IG V+ GKV +   FG  V    +  + G +   +LAG  VE    +         
Sbjct: 292 ---AIGQVVPGKVTKLVPFGAFVRV--YDGIEGLVHISELAGRHVEVPEQVVTVDDEIFV 346

Query: 924 -ILDVAKAERLVDLSLK 939
            ++D+    R + LSLK
Sbjct: 347 RVIDIDLERRRISLSLK 363


>gi|291545113|emb|CBL18222.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
            DMAPP forming) [Ruminococcus champanellensis 18P13]
          Length = 661

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 91/160 (56%), Gaps = 6/160 (3%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            +  G VK++TS G F+ L   +D  V +S LS   ++ P +   +G ++   + +++P +
Sbjct: 484  VFTGEVKSLTSYGAFVDLG-GIDGMVHISELSWKRIKHPSEVVKVGDMLEVYIKALDPEA 542

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
             R+ +  K  +     Q     L+  HVGD+V   +  +  +G F  I +  + GL H+S
Sbjct: 543  NRISLGYKKKEDNPWEQF----LAKYHVGDVVDATVVSITQFGAFAQIMD-GVDGLIHIS 597

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            +++   VDN++ I   G++V+VKI+++D EK+RIS+ M++
Sbjct: 598  QIANQRVDNVKDILSVGQQVQVKIVEIDPEKKRISISMRA 637



 Score = 48.9 bits (115), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 5/159 (3%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            I++G V+N    G  +        +V +     G     +      K V  +++ V    
Sbjct: 397  ILKGIVQNAVKGGLIVSCD---GVRVFVPASQSGLGRDADLSVLKNKPVELKIIEVNEQR 453

Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVS 1489
            +R   ++K         +         VG +  G++K + SYG F+ +   +  G+ H+S
Sbjct: 454  RRAVGSIKAVAKAQKDAARAKFWETAEVGQVFTGEVKSLTSYGAFVDLGGID--GMVHIS 511

Query: 1490 ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            ELS   + +   + + G+ ++V I  +D E  RISLG K
Sbjct: 512  ELSWKRIKHPSEVVKVGDMLEVYIKALDPEANRISLGYK 550



 Score = 45.8 bits (107), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 147/346 (42%), Gaps = 24/346 (6%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +  G  VKG V++V++  AIV          PL  +++    KP    + G EL   V  
Sbjct: 305 IHTGERVKGYVVSVNNNEAIVDVGTKHTGYVPLDELTDDPSKKPADLVQPGDELDLIVTK 364

Query: 556 VKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAP 614
           +      V   K  V  +L    + A+A +   I  G +    K G  V   +GV+ F P
Sbjct: 365 INDPEGYVLLSKRRV-DELVGFENIAKAKEEGTILKGIVQNAVKGGLIVSC-DGVRVFVP 422

Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-------DLV 667
            S+ GL    + S + +  + V+ +I+  +   RR  +  +    +  +D       +  
Sbjct: 423 ASQSGLGRDADLSVLKN--KPVELKIIE-VNEQRRRAVGSIKAVAKAQKDAARAKFWETA 479

Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQ 726
           ++G + +G V  +T     V +   G   G +    L+   ++H +    V+K G   + 
Sbjct: 480 EVGQVFTGEVKSLTSYGAFVDL---GGIDGMVHISELSWKRIKHPS---EVVKVGDMLEV 533

Query: 727 LL-VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
            +  LD E++ + L  K    N  +Q     +  H   VV   V +I + G F + +  +
Sbjct: 534 YIKALDPEANRISLGYKKKEDNPWEQF---LAKYHVGDVVDATVVSITQFGAFAQIMDGV 590

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
            G    S+  + +  ++     VGQ V+  I++++ E  RI++S++
Sbjct: 591 DGLIHISQIANQRVDNVKDILSVGQQVQVKIVEIDPEKKRISISMR 636


>gi|206974887|ref|ZP_03235802.1| ribosomal protein S1 [Bacillus cereus H3081.97]
 gi|229195798|ref|ZP_04322558.1| 30S ribosomal protein S1 [Bacillus cereus m1293]
 gi|423371578|ref|ZP_17348918.1| ribosomal protein S1 [Bacillus cereus AND1407]
 gi|423606699|ref|ZP_17582592.1| ribosomal protein S1 [Bacillus cereus VD102]
 gi|206746906|gb|EDZ58298.1| ribosomal protein S1 [Bacillus cereus H3081.97]
 gi|228587695|gb|EEK45753.1| 30S ribosomal protein S1 [Bacillus cereus m1293]
 gi|401101289|gb|EJQ09279.1| ribosomal protein S1 [Bacillus cereus AND1407]
 gi|401241524|gb|EJR47912.1| ribosomal protein S1 [Bacillus cereus VD102]
          Length = 382

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 180/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGTVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVG 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEVKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354


>gi|268679253|ref|YP_003303684.1| RNA binding S1 domain-containing protein [Sulfurospirillum deleyianum
            DSM 6946]
 gi|268617284|gb|ACZ11649.1| RNA binding S1 domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 558

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/476 (21%), Positives = 206/476 (43%), Gaps = 79/476 (16%)

Query: 1065 SLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA- 1123
            +L+   +  IK   + +  G    GR++ +EV D+  N+        K+G  +   I   
Sbjct: 37   ALINGVVVAIKEDVILVDVGKKSEGRLNASEVTDENGNI------TCKVGDVIPVVITGF 90

Query: 1124 ----------KSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYK 1173
                      K+ + D  K+F+ E                   EE D  +  ++TG    
Sbjct: 91   RNERPAVSHKKALRKDRIKAFIAEFK-----------------EEDDAVLDVKITGK--- 130

Query: 1174 VDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLV 1233
              N+   +  ++    + F+  S     ++        +GK +   V+ I+ + + + + 
Sbjct: 131  --NKGGFIAENKE-GIEFFLPRSQAAVKDMNSL-----MGKTLKVKVIKIDGDTESIIVS 182

Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTE 1293
             + + D    K  +I    +Q  I   ++V G I KI +   G+ V +G  + G VH++E
Sbjct: 183  RKKYLDDDRKKRKEI----VQELIDRDEVVEGTIKKITTY--GMFVDVGG-IDGLVHYSE 235

Query: 1294 LKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVD 1353
            +      +P + Y EG+ +  K ++  +  R   H+ LS+++++                
Sbjct: 236  ISYKGPVNPGTLYKEGEVIPVKAIKYDKDKR---HLSLSVKAAM---------------- 276

Query: 1354 TPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS-DGYVESPEKEF 1412
             P    E  ++L     +Q  + N+   G F+ L   ++  + +S +S D  ++ P    
Sbjct: 277  -PDPWDEIKDELETGDSIQVTISNIEPYGAFVDLGNDIEGFLHISEISWDKNIKHPRDYI 335

Query: 1413 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYG 1472
              G++V   V+ ++   +R+ V+LK   ++   +          VGD+V G+I  + ++G
Sbjct: 336  EEGQVVDVEVIEIDAKERRLRVSLKNVLAKPFDEF----TKKYKVGDVVKGEITTITAFG 391

Query: 1473 LFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
             F+ I    + GL H  + S D  +  + +++ G++V+VKI+K+D+E  ++SL  K
Sbjct: 392  AFVRI--GGIEGLLHNEDASWDRNNKCKELFKVGDEVEVKIVKIDEEAEKVSLSKK 445



 Score = 63.2 bits (152), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 115/517 (22%), Positives = 197/517 (38%), Gaps = 82/517 (15%)

Query: 458 KEGSCVRVRILGFR-------HLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
           K G  + V I GFR       H + L    +KA   E   F   D     V+  K+   +
Sbjct: 78  KVGDVIPVVITGFRNERPAVSHKKALRKDRIKAFIAE---FKEED---DAVLDVKITGKN 131

Query: 511 SFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGVKSKRITVTHKKTL 569
             G I +   G++   P    +  ++    GK  KV    V ++ G  ++ I V+ KK L
Sbjct: 132 KGGFIAENKEGIEFFLPRSQAAVKDMNSLMGKTLKVK---VIKIDG-DTESIIVSRKKYL 187

Query: 570 VKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
              +        E  DR  +  G I KI  +G FV    G+ G    SE+       P +
Sbjct: 188 DDDRKKRKEIVQELIDRDEVVEGTIKKITTYGMFVDV-GGIDGLVHYSEISYKGPVNPGT 246

Query: 629 MYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAV 685
           +Y  G+V+  + +      R ++LS    M  P    +D+L + G  +   +  + P   
Sbjct: 247 LYKEGEVIPVKAIKYDKDKRHLSLSVKAAMPDPWDEIKDEL-ETGDSIQVTISNIEPYGA 305

Query: 686 VV----------YVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESS 735
            V          ++    + K     +H  D++E   V+           +++ +D +  
Sbjct: 306 FVDLGNDIEGFLHISEISWDKNI---KHPRDYIEEGQVVDV---------EVIEIDAKER 353

Query: 736 NLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795
            L +S K  L   A+             VV G +  I   G FVR +G + G      A 
Sbjct: 354 RLRVSLKNVL---AKPFDEFTKKYKVGDVVKGEITTITAFGAFVR-IGGIEGLLHNEDAS 409

Query: 796 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAM 855
             +     + + VG  V   I+ ++ E  +++LS K+               L +  I  
Sbjct: 410 WDRNNKCKELFKVGDEVEVKIVKIDEEAEKVSLSKKE---------------LEDSPIQK 454

Query: 856 LQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHH---QLAGA 912
              S  NG             ++ GK+ +  +FG+ V  EE+ D    I      Q+  A
Sbjct: 455 YAKSHENGD------------IVHGKIRDIKEFGIFVELEENVD--ALIRKEDLGQVNEA 500

Query: 913 TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949
            ++ G  I+AAI  +   +  + LS++ +   + REA
Sbjct: 501 DLKVGDEIEAAITFIDDKKNRIRLSVRRLSKMKEREA 537



 Score = 54.7 bits (130), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 6/119 (5%)

Query: 1414 IGKLVAGRVLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESY 1471
            +GK +  +V+ ++  ++ + V+ K    D R   +  +  L  +   ++V G IK++ +Y
Sbjct: 161  MGKTLKVKVIKIDGDTESIIVSRKKYLDDDRKKRKEIVQEL--IDRDEVVEGTIKKITTY 218

Query: 1472 GLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            G+F+ +   +  GL H SE+S     N  T+Y+ GE + VK +K DK+KR +SL +K++
Sbjct: 219  GMFVDVGGID--GLVHYSEISYKGPVNPGTLYKEGEVIPVKAIKYDKDKRHLSLSVKAA 275



 Score = 47.8 bits (112), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 130/284 (45%), Gaps = 43/284 (15%)

Query: 1251 DNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYD 1307
            D ++  +  GD +   IS I     G  V +G  + G +H +E+   KNI    P    +
Sbjct: 281  DEIKDELETGDSIQVTISNIEPY--GAFVDLGNDIEGFLHISEISWDKNI--KHPRDYIE 336

Query: 1308 EGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP 1367
            EGQ V  +V+EI    R        LR SL  +       L+   D   K   K+ D   
Sbjct: 337  EGQVVDVEVIEIDAKER-------RLRVSLKNV-------LAKPFDEFTKKY-KVGD--- 378

Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE-KE-FPIGKLVAGRVLSV 1425
              +V+G +  +T+ G F+ +      + LL N    +  + + KE F +G  V  +++ +
Sbjct: 379  --VVKGEITTITAFGAFVRIG---GIEGLLHNEDASWDRNNKCKELFKVGDEVEVKIVKI 433

Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHV-GDIVIGQIKRVESYGLFITIENTNLVG 1484
            +  +++V ++      +    S I   +  H  GDIV G+I+ ++ +G+F+ +E  N+  
Sbjct: 434  DEEAEKVSLS-----KKELEDSPIQKYAKSHENGDIVHGKIRDIKEFGIFVELEE-NVDA 487

Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            L    +L + +    E   + G++++  I  +D +K RI L ++
Sbjct: 488  LIRKEDLGQVN----EADLKVGDEIEAAITFIDDKKNRIRLSVR 527


>gi|335046374|ref|ZP_08539397.1| putative ribosomal protein S1 [Oribacterium sp. oral taxon 108 str.
            F0425]
 gi|363897070|ref|ZP_09323613.1| hypothetical protein HMPREF9624_00175 [Oribacterium sp. ACB7]
 gi|333760160|gb|EGL37717.1| putative ribosomal protein S1 [Oribacterium sp. oral taxon 108 str.
            F0425]
 gi|361959697|gb|EHL12973.1| hypothetical protein HMPREF9624_00175 [Oribacterium sp. ACB7]
          Length = 368

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 179/384 (46%), Gaps = 65/384 (16%)

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1259
            L+E  +  H G+ VTG V+S+  ++  L +  +   DGI  ++ D S DN   + T +  
Sbjct: 10   LEESLKSVHAGEIVTGTVISVKPDEIALNIGYK--SDGIMTRS-DYSADNQLDLTTVVKV 66

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD +  ++ K+  G G +++          H   L++    +    ++E   +  KV+++
Sbjct: 67   GDEIECKVKKVNDGEGQVILS---------HRDALQSKASEELRKAFEENAILTGKVVQV 117

Query: 1320 SRTVRGTFHVELS-----LRSSLDGMSSTNSSDLS----TDVD------TPGK------- 1357
               V+G  +VE+      + +SL  +S +   DL+     D+        P K       
Sbjct: 118  ---VKGGLNVEVDGARIFVPASL--VSDSFERDLNKYQGQDIQFVITEFNPAKRRIIGDR 172

Query: 1358 -----------HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE 1406
                       H +   +L       G VKN+T  G FI L    D  + +S +S G +E
Sbjct: 173  KQIMSAQKKEQHDKLFSELKEGDTRTGVVKNLTDFGAFIDLG-GADGLLHISEMSWGRIE 231

Query: 1407 SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIK 1466
            +P+K F  G+ V   VL  E   +R+ +T K  +      +E    S   VG+IV G++ 
Sbjct: 232  NPKKLFKPGQEV--EVLVKEISGERIALTRKFPNENPWKDAE----SKYAVGEIVKGKVA 285

Query: 1467 RVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526
            R+  +G FI + +  +  L HVS++S+DHV+    +   G++++ +++ +D +  +ISL 
Sbjct: 286  RMTDFGAFIEL-DKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHKISLS 344

Query: 1527 MKSSYFKNDAD----NLQMSSEEE 1546
            +K+   + + D    ++   SEEE
Sbjct: 345  IKALLPEEEEDTADVDVSAVSEEE 368



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 104/244 (42%), Gaps = 15/244 (6%)

Query: 415 KVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF---- 470
           KVV+V +G GL +++    +  PA + +SD  E ++ K +     G  ++  I  F    
Sbjct: 113 KVVQVVKG-GLNVEVDGARIFVPASL-VSDSFERDLNKYQ-----GQDIQFVITEFNPAK 165

Query: 471 RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPH 530
           R + G    I+ A   E      S++K G    G V  +  FGA +   GG   L  +  
Sbjct: 166 RRIIGDRKQIMSAQKKEQHDKLFSELKEGDTRTGVVKNLTDFGAFIDL-GGADGLLHISE 224

Query: 531 MSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITH 590
           MS   I  P K FK G E+   V  +  +RI +T K           S YA      I  
Sbjct: 225 MSWGRIENPKKLFKPGQEVEVLVKEISGERIALTRKFPNENPWKDAESKYAVGE---IVK 281

Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
           G + ++   G F+    G+      S++  D   +PS +   GQ ++ R++     + +I
Sbjct: 282 GKVARMTDFGAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHKI 341

Query: 651 NLSF 654
           +LS 
Sbjct: 342 SLSI 345



 Score = 40.8 bits (94), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 152/359 (42%), Gaps = 37/359 (10%)

Query: 226 SLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID----VKPGLLLQ 281
           SL++V  G ++T  V S++     L+ G  S  G + R++ + ++ +D    VK G  ++
Sbjct: 13  SLKSVHAGEIVTGTVISVKPDEIALNIGYKS-DGIMTRSDYSADNQLDLTTVVKVGDEIE 71

Query: 282 GVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSF 341
             V+ ++     V LS      SK   +  K    + ++ G +V           V+   
Sbjct: 72  CKVKKVNDGEGQVILSHRDALQSKASEELRKAFEENAILTGKVVQ----------VVKGG 121

Query: 342 LTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD--PTSRAVGLTLNPYLLHNR 399
           L        IF +  +  + +++ D N+++  + + +  +  P  R + +     ++  +
Sbjct: 122 LNVEVDGARIF-VPASLVSDSFERDLNKYQGQDIQFVITEFNPAKRRI-IGDRKQIMSAQ 179

Query: 400 APPSH------VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
               H      +K GD   ++ VV+     G  +D+          + IS+++   +   
Sbjct: 180 KKEQHDKLFSELKEGDT--RTGVVKNLTDFGAFIDLGGAD----GLLHISEMSWGRIENP 233

Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG-LVFTHSDVKPGMVVKGKVIAVDSF 512
           +K +K G  V V +   + + G    + +    E       S    G +VKGKV  +  F
Sbjct: 234 KKLFKPGQEVEVLV---KEISGERIALTRKFPNENPWKDAESKYAVGEIVKGKVARMTDF 290

Query: 513 GAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV--LGVKSKRITVTHKKTL 569
           GA ++   G+ AL  +  +S+  + KP    + G E+  RV  L V + +I+++ K  L
Sbjct: 291 GAFIELDKGIDALLHVSQISKDHVNKPSDVLEPGQEIEARVVDLDVDNHKISLSIKALL 349


>gi|315652055|ref|ZP_07905056.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
            [Lachnoanaerobaculum saburreum DSM 3986]
 gi|315485702|gb|EFU76083.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
            [Lachnoanaerobaculum saburreum DSM 3986]
          Length = 368

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 165/350 (47%), Gaps = 35/350 (10%)

Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN---MQTFIHE 1259
            L E  +  H G+ V G V+ + +++ +L +  +   DGI  ++ + SNDN   ++T +H 
Sbjct: 10   LDESFKTLHTGEVVNGKVIDVKEDQIILNVGFK--SDGIITRS-EYSNDNNLDLRTVVHV 66

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVH------FTELKNICVSDPLSGYDEGQFV- 1312
            GD +  ++ KI  G G +++        R +      F   K +     +   D G  V 
Sbjct: 67   GDEMEAKVLKINDGEGQVLLSYKKLAQDRGNKKLEDAFNN-KEVLTGKVVQVVDGGLSVV 125

Query: 1313 --KCKVLEISRTVRGTFHVELSLRSSLD---GMSSTNSSDLSTDVDTPGKHLEKIED--- 1364
                +V   +  V  TF  +LS     D    ++  N        D     L K E+   
Sbjct: 126  VDDARVFIPASLVSDTFERDLSKYKDTDIEFVITEFNPRRRRIIGDRKQLLLAKKEEQKK 185

Query: 1365 -----LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
                 ++P  +++G VKNVT  G F+ L    D  + +S +S G VE+P+K F  G+ V 
Sbjct: 186  ALFDKITPGDVIEGTVKNVTDFGAFVDLG-GADGLLHISEMSWGRVENPKKVFKSGEKVT 244

Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
              +  +    +++ +++K  D      +E         G++V G++ R+  +G F+ I N
Sbjct: 245  AFIKDIS--GEKIALSMKFPDQNPWLDAE----EKFARGNVVKGRVARMTDFGAFVEISN 298

Query: 1480 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
              +  L HVS++S DHV+    + + G++V+  I++ ++ +++ISL +K+
Sbjct: 299  -GVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPEKKISLSIKA 347



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 106/245 (43%), Gaps = 19/245 (7%)

Query: 415 KVVRV-DRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRK-----LEKKYKEGSCVRVRIL 468
           KVV+V D GL +++D     V  PA + +SD  E ++ K     +E    E +  R RI+
Sbjct: 113 KVVQVVDGGLSVVVD--DARVFIPASL-VSDTFERDLSKYKDTDIEFVITEFNPRRRRII 169

Query: 469 GFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPL 528
           G R        +L A   E        + PG V++G V  V  FGA V   GG   L  +
Sbjct: 170 GDRK------QLLLAKKEEQKKALFDKITPGDVIEGTVKNVTDFGAFVDL-GGADGLLHI 222

Query: 529 PHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588
             MS   +  P K FK G ++   +  +  ++I ++ K       L     +A      +
Sbjct: 223 SEMSWGRVENPKKVFKSGEKVTAFIKDISGEKIALSMKFPDQNPWLDAEEKFARGN---V 279

Query: 589 THGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648
             G + ++   G FV   NGV      S++  D   +PS +  VG  V+  I+      +
Sbjct: 280 VKGRVARMTDFGAFVEISNGVDALLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPEK 339

Query: 649 RINLS 653
           +I+LS
Sbjct: 340 KISLS 344



 Score = 48.1 bits (113), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 139/346 (40%), Gaps = 57/346 (16%)

Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM----KPTRVSEDDL 666
           G   RSE   D   +  ++ HVG  ++ +++       ++ LS+      +  +  ED  
Sbjct: 45  GIITRSEYSNDNNLDLRTVVHVGDEMEAKVLKINDGEGQVLLSYKKLAQDRGNKKLEDAF 104

Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH------ATVMKSVIKP 720
                L   VV VV     VV   A+ +    IP   ++D  E        T ++ VI  
Sbjct: 105 NNKEVLTGKVVQVVDGGLSVVVDDARVF----IPASLVSDTFERDLSKYKDTDIEFVITE 160

Query: 721 GYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVR 780
                + ++ D +   LLL+ K       +Q  +    I P  V+ G V N+ + G FV 
Sbjct: 161 FNPRRRRIIGDRKQ--LLLAKK------EEQKKALFDKITPGDVIEGTVKNVTDFGAFVD 212

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDA 840
            LG   G    S+   G+  +  K +  G+ V + I D++ E  +I LS+K         
Sbjct: 213 -LGGADGLLHISEMSWGRVENPKKVFKSGEKVTAFIKDISGE--KIALSMK--------- 260

Query: 841 SFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDV 900
            F  ++  L+ +                 E F  G+V++G+V    DFG  V      D 
Sbjct: 261 -FPDQNPWLDAE-----------------EKFARGNVVKGRVARMTDFGAFVEISNGVDA 302

Query: 901 YGFIT-----HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
              ++     H +     ++ G  ++A I++  + E+ + LS+K +
Sbjct: 303 LLHVSQISHDHVEKPSDVLKVGDEVEAVIVEFNEPEKKISLSIKAL 348


>gi|184155356|ref|YP_001843696.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
 gi|227515174|ref|ZP_03945223.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
 gi|260662131|ref|ZP_05863027.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
 gi|183226700|dbj|BAG27216.1| 30S ribosomal protein S1 [Lactobacillus fermentum IFO 3956]
 gi|227086506|gb|EEI21818.1| ribosomal protein S1 [Lactobacillus fermentum ATCC 14931]
 gi|260553514|gb|EEX26406.1| 30S ribosomal protein S1 [Lactobacillus fermentum 28-3-CHN]
          Length = 410

 Score = 83.2 bits (204), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 94/166 (56%), Gaps = 6/166 (3%)

Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
            +L+   +V+G V  +T+ G FI L   +D  V +S +S  +V+ P     +G+ V  +VL
Sbjct: 197  ELAAGDVVEGKVARMTNFGAFIDLG-GVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVL 255

Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1483
            +V+P  +R+ +++K +        E        VG ++ G +KR+ S+G F+ +    + 
Sbjct: 256  NVDPERERISLSIKQTLPGPWDDIE----EKAAVGTVLTGTVKRLTSFGAFVEV-FPGVE 310

Query: 1484 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
            GL H+S++S  H+     +  AG++VKVK+L VD E++R+ L +K+
Sbjct: 311  GLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKA 356



 Score = 73.9 bits (180), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 1398 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1457
            S ++D YVE    +F  G+ +  +++ +EP   R+ ++ K        ++     S L  
Sbjct: 143  SMITDHYVEDL-NQFK-GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELAA 200

Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
            GD+V G++ R+ ++G FI +   +  GL HVSE+S DHVD    +   G++VKVK+L VD
Sbjct: 201  GDVVEGKVARMTNFGAFIDLGGVD--GLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVD 258

Query: 1518 KEKRRISLGMKSS 1530
             E+ RISL +K +
Sbjct: 259  PERERISLSIKQT 271



 Score = 68.9 bits (167), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
           I++A   E      S++  G VV+GKV  + +FGA +   GGV  L  +  +S   + KP
Sbjct: 182 IVQAQHEEAAKKIFSELAAGDVVEGKVARMTNFGAFIDL-GGVDGLVHVSEISYDHVDKP 240

Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
               +VG E+  +VL V  + +RI+++ K+TL      I    A  T   +  G + ++ 
Sbjct: 241 ADVLEVGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIEEKAAVGT---VLTGTVKRLT 297

Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             G FV  + GV+G    S++       P+ +   GQ VK ++++  P  +R+ LS 
Sbjct: 298 SFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSI 354



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 140/355 (39%), Gaps = 63/355 (17%)

Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE--- 663
           +GV+G  P ++L   P    + +  VG  +   ++S I  S + N S+++   R+     
Sbjct: 46  SGVEGVVPANQLSTKPVDNINDVVKVGDELDLVVISKI-GSDKENGSYLLSHRRLEAMKV 104

Query: 664 --------DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715
                   DD    G  ++  V       +VV    +G+   ++ T+H  + L       
Sbjct: 105 WNEIQKKFDD----GETITATVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFK--- 157

Query: 716 SVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNII 773
                G E +  ++    S N L+ +   ++ +  +  +    S +    VV G V  + 
Sbjct: 158 -----GEELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKKIFSELAAGDVVEGKVARMT 212

Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
             G F+  LG + G    S+         +    VGQ V+  +L+V+ E  RI+LS+KQ+
Sbjct: 213 NFGAFID-LGGVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNVDPERERISLSIKQT 271

Query: 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
                D         +EEK A                   +G+V+ G V     FG  V 
Sbjct: 272 LPGPWDD--------IEEKAA-------------------VGTVLTGTVKRLTSFGAFV- 303

Query: 894 FEEHSDVYGF-----ITHHQLA--GATVESGSVIQAAILDVAKAERLVDLSLKTV 941
            E    V G      I+H  +A     +E+G  ++  +L+V    + + LS+K +
Sbjct: 304 -EVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKAL 357



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 23/186 (12%)

Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
            GD+V G+++++ +   G  + +G  + G VH +E+    V  P    + GQ VK KVL +
Sbjct: 201  GDVVEGKVARMTNF--GAFIDLG-GVDGLVHVSEISYDHVDKPADVLEVGQEVKVKVLNV 257

Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
                     + LS++ +L G               P   +E  E  +   ++ G VK +T
Sbjct: 258  DPERE---RISLSIKQTLPG---------------PWDDIE--EKAAVGTVLTGTVKRLT 297

Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
            S G F+ +   ++  V +S +S  ++ +P      G+ V  +VL+V+P  +R+ +++K  
Sbjct: 298  SFGAFVEVFPGVEGLVHISQISHKHIATPADVLEAGQEVKVKVLNVDPERQRLGLSIKAL 357

Query: 1440 DSRTAS 1445
            +   A 
Sbjct: 358  EEAPAG 363


>gi|420153154|ref|ZP_14660147.1| 30S ribosomal protein S1 [Actinomyces massiliensis F0489]
 gi|394761582|gb|EJF43930.1| 30S ribosomal protein S1 [Actinomyces massiliensis F0489]
          Length = 484

 Score = 83.2 bits (204), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 187/400 (46%), Gaps = 53/400 (13%)

Query: 1142 PSMLTVSEIGS-KLLFEECDVSI-----GQRVTGYVYKVDNEWALLTISRHLK----AQL 1191
            P+ + V++IGS + +    D +I     G  V G V KVD +  LL I    +    A+ 
Sbjct: 8    PAPVAVNDIGSTEEILAAVDETIKYFDDGDIVEGTVVKVDRDEVLLDIGYKTEGVILARE 67

Query: 1192 FILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISND 1251
              +    +P E+        IG  +   VL   KE K  RL+L   +        + +  
Sbjct: 68   LSIKHDVDPDEI------VSIGDEIEALVL--QKEDKEGRLLLSKKR-----AQYERAWG 114

Query: 1252 NMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF 1311
             ++    E  +V G + +++ G  GL++ IG   +      E++ +    P  G +    
Sbjct: 115  TIERVKEEDGVVTGSVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYVGRE---- 168

Query: 1312 VKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIV 1371
            ++ K++E+ +      +V LS R+ L+   S   ++              ++ L    + 
Sbjct: 169  LEAKIIELDKNRN---NVVLSRRAYLEQTQSEVRTNF-------------LQTLQKGQVR 212

Query: 1372 QGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKR 1431
             G V ++ + G F+ L   +D  V +S LS  +++ P +   +G  V   VL V+   +R
Sbjct: 213  TGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVEVGTEVTVEVLDVDFDRER 271

Query: 1432 VEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSE 1490
            V ++LK +      +      +  H +G +V G++ ++  +G F+ +E+  + GL H+SE
Sbjct: 272  VSLSLKAT-----QEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVED-GIEGLVHISE 325

Query: 1491 LSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
            L++ HV+  E + + G++V VK++ +D E+RRISL +K +
Sbjct: 326  LAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365



 Score = 44.7 bits (104), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           ++ G V  G V ++ +FGA V   GGV  L  +  +S   I  P +  +VG E+   VL 
Sbjct: 206 LQKGQVRTGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVEVGTEVTVEVLD 264

Query: 556 VK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
           V    +R++++ K T      A   ++A      +  G +TK+   G FVR  +G++G  
Sbjct: 265 VDFDRERVSLSLKATQEDPWQAFARTHAIGQ---VVPGKVTKLVPFGAFVRVEDGIEGLV 321

Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
             SEL       P  +  VG  V  +++      RRI+LS 
Sbjct: 322 HISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSL 362



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 144/348 (41%), Gaps = 31/348 (8%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V+G V+ VD    ++      + +     +S    V P +   +G E+   VL  + 
Sbjct: 36  GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSIGDEIEALVLQKED 95

Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           K  R+ ++ K+   +     +    E  D ++T G + ++ K G  +    G++GF P S
Sbjct: 96  KEGRLLLSKKRAQYERAWGTIERVKE-EDGVVT-GSVIEVVKGGLILDI--GLRGFLPAS 151

Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
             E+      +P    +VG+ ++ +I+      +++  SRR  L       R +    ++
Sbjct: 152 LVEMRRVRDLQP----YVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRTNFLQTLQ 207

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFDQL 727
            G + +GVV  +      V +   G   G +    L+  H++H + +  V          
Sbjct: 208 KGQVRTGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPSEVVEVGTEVTVEVLD 264

Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
           +  D E  +L L A        Q+ P  A +  H    VV G V  ++  G FVR    +
Sbjct: 265 VDFDRERVSLSLKA-------TQEDPWQAFARTHAIGQVVPGKVTKLVPFGAFVRVEDGI 317

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
            G    S+          +   VG  V   ++D++ E  RI+LSLKQ+
Sbjct: 318 EGLVHISELAQRHVEVPEQVAKVGDEVFVKVIDIDLERRRISLSLKQA 365


>gi|161579046|ref|NP_296751.2| 30S ribosomal protein S1 [Chlamydia muridarum Nigg]
 gi|270285161|ref|ZP_06194555.1| 30S ribosomal protein S1 [Chlamydia muridarum Nigg]
 gi|270289180|ref|ZP_06195482.1| 30S ribosomal protein S1 [Chlamydia muridarum Weiss]
 gi|301336556|ref|ZP_07224758.1| 30S ribosomal protein S1 [Chlamydia muridarum MopnTet14]
 gi|7404452|sp|P38016.2|RS1_CHLMU RecName: Full=30S ribosomal protein S1; AltName: Full=70 kDa antigen
          Length = 570

 Score = 83.2 bits (204), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 183/400 (45%), Gaps = 64/400 (16%)

Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
            ++IG+R  G V  + +    L +   +   L I D  ++    PSE+ E  +   +    
Sbjct: 217  ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271

Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
               +LS++KEK  + L L+     P++D             ++     G  V G+I K+L
Sbjct: 272  --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316

Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
                G  ++I   + G +H +E+   KNI   DP    ++G  V+  VL I +       
Sbjct: 317  PY--GAFIEIEEGIEGLIHVSEMSWVKNIV--DPNEVVNKGDEVEVVVLSIQKD-----E 367

Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
             ++SL     G+  T  +        P  ++E  E     + V   +KN+T+ G F+ L 
Sbjct: 368  GKISL-----GLKQTEHN--------PWDNIE--EKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
              ++  + +S++S    V  P + F  G  V   +LSV+  SK++ + +K        + 
Sbjct: 413  PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
            E    +   VG  + G + ++ ++G F+ ++N  + GL HVS+LS+     IE I   G+
Sbjct: 473  E----AMFPVGSDISGIVTKITAFGAFVELQN-GIEGLIHVSKLSDKPFAKIEDILSIGD 527

Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1547
            KV  K++K+D + +++SL +K   F     +    +EEE+
Sbjct: 528  KVSAKVIKLDPDHKKVSLSIKE--FLAHGGHAGQDAEEET 565



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 142/287 (49%), Gaps = 38/287 (13%)

Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
            EG IV G+I++ + G  GL+V IG   +    ++   ++KN      L  Y  G+  + K
Sbjct: 133  EGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183

Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
            +L+I+   R   +V +S R  L+    +  ++L             IE ++     +G V
Sbjct: 184  ILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227

Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
            KN+T  G F+ L   +D  + +++++   +  P +   + + +   +LSV+    RV + 
Sbjct: 228  KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALG 286

Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
            LK  +       E         G  V G+I ++  YG FI IE   + GL HVSE+S  +
Sbjct: 287  LKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341

Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
            + VD  E + + G++V+V +L + K++ +ISLG+K +   N  DN++
Sbjct: 342  NIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTEH-NPWDNIE 386



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
           G  V V +L  +  EG  +  LK +              G+ V  ++  + ++GA V+  
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412

Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
            G++ L  +  MS  + V  P + FK G  +   +L V  +SK+IT+  K+        I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472

Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
            + +   +D     G +TKI   G FV   NG++G    S+L   P  +   +  +G  V
Sbjct: 473 EAMFPVGSD---ISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILSIGDKV 529

Query: 637 KCRIMSSIPASRRINLSF 654
             +++   P  ++++LS 
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547



 Score = 42.7 bits (99), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 96/476 (20%), Positives = 190/476 (39%), Gaps = 72/476 (15%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S+V+PG ++KG V+ +     +V    G+K+   +P MSEF  +   +   VGAE+   +
Sbjct: 47  SEVQPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLSVGAEVEVYL 101

Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
              + +  ++ ++ +K   + +   + ++ E     I  G IT+  K G  V    G++ 
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GMEA 157

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED---- 664
           F P S+  +D     +   +VG+V + +I+  I   RR   ++   +++  R+S+     
Sbjct: 158 FLPGSQ--IDNKKIKNLDDYVGKVCEFKIL-KINVDRRNVVVSRRELLEAERISKKAELI 214

Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
           + + +G    G+V  +T     V++   G       T+     + H + M        E 
Sbjct: 215 EQITIGERRKGIVKNITDFG--VFLDLDGIDGLLHITDMTWKRIRHPSEM-------VEL 265

Query: 725 DQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
           +Q     +L +D E   + L  K    N  + +        P   V G +  ++  G F+
Sbjct: 266 NQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAFI 322

Query: 780 RFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
                + G    S+    +   D ++    G  V   +L +  + G+I+L LKQ+  +  
Sbjct: 323 EIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPW 382

Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE-- 896
           D         +EEK                   + IG  +  ++    ++G  V  E   
Sbjct: 383 DN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPGI 415

Query: 897 ----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
               H     +I          + G+ ++A IL V K  + + L +K +  + + E
Sbjct: 416 EGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471


>gi|423576686|ref|ZP_17552805.1| ribosomal protein S1 [Bacillus cereus MSX-D12]
 gi|401207682|gb|EJR14461.1| ribosomal protein S1 [Bacillus cereus MSX-D12]
          Length = 382

 Score = 83.2 bits (204), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 180/398 (45%), Gaps = 53/398 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
             ++ ++             ++   K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 167  HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVG 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEVKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
            +L+V   ++RISL +K +  +N+        E  +D A
Sbjct: 328  VLEVHVAEKRISLSIKEALEENNVTEDYSQYEPNADSA 365



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G VV+G V  +  FGA V   GGV  L  +  +S   + +P +  + G ++  +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
           L V   ++RI+++ K          +    +A D  I  G + ++   G FV    GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENVGGEVKAGD--IREGVVKRLVTFGAFVEILPGVEG 299

Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
               S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTED 354


>gi|229172235|ref|ZP_04299799.1| 30S ribosomal protein S1 [Bacillus cereus MM3]
 gi|423403890|ref|ZP_17381063.1| ribosomal protein S1 [Bacillus cereus BAG2X1-2]
 gi|423460523|ref|ZP_17437320.1| ribosomal protein S1 [Bacillus cereus BAG5X2-1]
 gi|423475480|ref|ZP_17452195.1| ribosomal protein S1 [Bacillus cereus BAG6X1-1]
 gi|228611223|gb|EEK68481.1| 30S ribosomal protein S1 [Bacillus cereus MM3]
 gi|401140576|gb|EJQ48132.1| ribosomal protein S1 [Bacillus cereus BAG5X2-1]
 gi|401648034|gb|EJS65637.1| ribosomal protein S1 [Bacillus cereus BAG2X1-2]
 gi|402435350|gb|EJV67384.1| ribosomal protein S1 [Bacillus cereus BAG6X1-1]
          Length = 382

 Score = 83.2 bits (204), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 172/384 (44%), Gaps = 53/384 (13%)

Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
            ++ +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    
Sbjct: 14   ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60

Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
            V+ +++  +L  + L      +S + VD       +Q     G +    +  I++G  GL
Sbjct: 61   VVELDQILELKIIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIVNG--GL 118

Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
            VV +G     P     VH+ E          + Y +G+ +  K++E+ R           
Sbjct: 119  VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDREKNRVI----- 164

Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
                   +S     +L  D     K  E I  L    +V+G V+ +T  G F+ +   +D
Sbjct: 165  -------LSHKAVVELELD----SKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212

Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
              V +S +S   VE P +    G+ V  +VLSV+  ++R+ +++K +          N  
Sbjct: 213  GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NVA 268

Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
              +  GDI  G +KR+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK
Sbjct: 269  GEIKAGDIREGVVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 1513 ILKVDKEKRRISLGMKSSYFKNDA 1536
            +L+V   ++RISL +K +  +N+ 
Sbjct: 328  VLEVHVAEKRISLSIKETLEENNV 351


>gi|152975021|ref|YP_001374538.1| 30S ribosomal protein S1 [Bacillus cytotoxicus NVH 391-98]
 gi|152023773|gb|ABS21543.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 382

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 181/381 (47%), Gaps = 55/381 (14%)

Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
            +G  VTG V KV+ +  L+ +        +  D     SEL       HI KA    V+ 
Sbjct: 17   VGDIVTGSVIKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SDVVE 63

Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
            +++  +L  + L      +S + VD       +Q     G++    ++ I++G  GLVV 
Sbjct: 64   VDQTLELKVIKLEEDDLVLSKRAVDAEKAWVELQEKFTSGEVFDVTVNDIVNG--GLVVD 121

Query: 1281 IG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
            +G     P     VH+ E          + Y +G+ +  K++E+ R       V LS ++
Sbjct: 122  LGVRGFIPASLVEVHYVE--------DFTEY-KGKTLAVKIVELDRE---KNRVILSHKA 169

Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
             ++            ++D+  K  E I  L    IV+G V+ +T  G F+ +   +D  V
Sbjct: 170  VVE-----------QELDSKKK--EAISSLKEGEIVEGTVQRLTDFGAFVNVG-GVDGLV 215

Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN- 1454
             +S +S   V  P      G+ V  +VLSV+  ++R+ +++K      A+     ++++ 
Sbjct: 216  HISQISHERVGQPSDVLEQGQKVKVKVLSVDADTQRISLSIKA-----AAPGPWEHVADE 270

Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
            + VGD+  G + R+ ++G F+ I    + GL HVS+++  HV N   +   G++VKVK+L
Sbjct: 271  IKVGDVREGTVNRIVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKVKVL 329

Query: 1515 KVDKEKRRISLGMKSSYFKND 1535
            +V+  ++RISL +K +  +N+
Sbjct: 330  EVNAAEKRISLSIKEALEENN 350



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 16/179 (8%)

Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
           S +K G +V+G V  +  FGA V   GGV  L  +  +S   + +P    + G ++  +V
Sbjct: 184 SSLKEGEIVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVGQPSDVLEQGQKVKVKV 242

Query: 554 LGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYN 607
           L V   ++RI+++        K A    +    D +    +  G + +I   G FV    
Sbjct: 243 LSVDADTQRISLS-------IKAAAPGPWEHVADEIKVGDVREGTVNRIVTFGAFVEILP 295

Query: 608 GVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
           GV+G    S++       P+ +  +GQ VK +++    A +RI+LS    ++   V+ED
Sbjct: 296 GVEGLVHVSQIANRHVKNPNEVLEIGQEVKVKVLEVNAAEKRISLSIKEALEENNVTED 354



 Score = 46.2 bits (108), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 146/349 (41%), Gaps = 33/349 (9%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G +V G VI V+    +V        + P+  ++   I K     +V   L  +V+ ++ 
Sbjct: 18  GDIVTGSVIKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVEVDQTLELKVIKLEE 77

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618
             + ++  K  V ++ A +    + T   +    +  I   G  V    GV+GF P S +
Sbjct: 78  DDLVLS--KRAVDAEKAWVELQEKFTSGEVFDVTVNDIVNGGLVVDL--GVRGFIPASLV 133

Query: 619 GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL----------VK 668
            +    E  + Y  G+ +  +I+       R+ LS       V E +L          +K
Sbjct: 134 EVHY-VEDFTEYK-GKTLAVKIVELDREKNRVILSHKA----VVEQELDSKKKEAISSLK 187

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPGYEFD- 725
            G +V G V  +T     V V   G   G +   H++  + H  V +   V++ G +   
Sbjct: 188 EGEIVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVGQPSDVLEQGQKVKV 240

Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRL 785
           ++L +D ++  + LS K +     + +   A  I    V  G V  I+  G FV  L  +
Sbjct: 241 KVLSVDADTQRISLSIKAAAPGPWEHV---ADEIKVGDVREGTVNRIVTFGAFVEILPGV 297

Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
            G    S+  +    + ++   +GQ V+  +L+VN+   RI+LS+K++ 
Sbjct: 298 EGLVHVSQIANRHVKNPNEVLEIGQEVKVKVLEVNAAEKRISLSIKEAL 346



 Score = 45.1 bits (105), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 143/365 (39%), Gaps = 54/365 (14%)

Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 643
           I  G + K+E+    V       G  P SEL      + S +  V Q ++ +++      
Sbjct: 20  IVTGSVIKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVEVDQTLELKVIKLEEDD 79

Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
           +  S+R   +   +   V   +    G +    V+ +    +VV +  +G+   ++   H
Sbjct: 80  LVLSKR---AVDAEKAWVELQEKFTSGEVFDVTVNDIVNGGLVVDLGVRGFIPASLVEVH 136

Query: 704 -LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHP 761
            + D  E+     +V        +++ LD E + ++LS K  +         +A S +  
Sbjct: 137 YVEDFTEYKGKTLAV--------KIVELDREKNRVILSHKAVVEQELDSKKKEAISSLKE 188

Query: 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNS 821
             +V G V  + + G FV  +G + G    S+    +    S     GQ V+  +L V++
Sbjct: 189 GEIVEGTVQRLTDFGAFVN-VGGVDGLVHISQISHERVGQPSDVLEQGQKVKVKVLSVDA 247

Query: 822 ETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGK 881
           +T RI+LS+K +     +                     H   E+K      +G V EG 
Sbjct: 248 DTQRISLSIKAAAPGPWE---------------------HVADEIK------VGDVREGT 280

Query: 882 VHESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLV 934
           V+    FG  V       V G +   Q+A   V       E G  ++  +L+V  AE+ +
Sbjct: 281 VNRIVTFGAFVEI--LPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKVKVLEVNAAEKRI 338

Query: 935 DLSLK 939
            LS+K
Sbjct: 339 SLSIK 343



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 440 VTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPG 499
           V IS ++ E V +     ++G  V+V++L         +  +KA+A         ++K G
Sbjct: 215 VHISQISHERVGQPSDVLEQGQKVKVKVLSVDADTQRISLSIKAAAPGPWEHVADEIKVG 274

Query: 500 MVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS- 558
            V +G V  + +FGA V+   GV+ L  +  ++   +  P +  ++G E+  +VL V + 
Sbjct: 275 DVREGTVNRIVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKVKVLEVNAA 334

Query: 559 -KRITVTHKKTL 569
            KRI+++ K+ L
Sbjct: 335 EKRISLSIKEAL 346


>gi|91775280|ref|YP_545036.1| 30S ribosomal protein S1 [Methylobacillus flagellatus KT]
 gi|91775424|ref|YP_545180.1| 30S ribosomal protein S1 [Methylobacillus flagellatus KT]
 gi|91709267|gb|ABE49195.1| SSU ribosomal protein S1P [Methylobacillus flagellatus KT]
 gi|91709411|gb|ABE49339.1| SSU ribosomal protein S1P [Methylobacillus flagellatus KT]
          Length = 569

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 135/292 (46%), Gaps = 33/292 (11%)

Query: 1276 GLVVQIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331
            G  V+I P + G VH +E+    KN+    P      G  V+  +LEI    R      L
Sbjct: 300  GAFVEIEPGIEGLVHVSEMDWTNKNVH---PAKIAQLGDEVEVMILEIDEDRR-----RL 351

Query: 1332 SLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL 1391
            SL     GM    ++    D     K  +K         V G +K++T  G FI L   +
Sbjct: 352  SL-----GMKQCQANPWD-DFAATHKKGDK---------VSGQIKSITDFGVFIGLPGGI 396

Query: 1392 DAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN 1450
            D  V LS+LS +   E   + F  G  +   VLS++   +R+ + +K  DS   S     
Sbjct: 397  DGLVHLSDLSWNQPGEEAIRNFKKGDELEAVVLSIDVEKERISLGVKQLDSDPFSAYTAL 456

Query: 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVK 1510
            N      G IV G +K +E+ G  I ++N  + G    SE+S D VD+I T+ + G++++
Sbjct: 457  N----DKGAIVKGTVKSIEAKGAVIALDN-EVEGYLRASEVSRDKVDDISTVLKEGDEIE 511

Query: 1511 VKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSL 1562
             +I  +D++ R I+L +K+    ++AD LQ  S +        +G+  ++ L
Sbjct: 512  ARITNIDRKNRSIALSIKAKDIADEADALQKFSNDAGSAGTTNLGALLKAKL 563



 Score = 71.2 bits (173), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 7/168 (4%)

Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
            +E L    +V+G VKN+T  G F+ L   +D  + +++L+   V+ P +   +G+ V  +
Sbjct: 195  LESLKEGAVVKGIVKNITDYGAFVDLG-GIDGLLHITDLAWRRVKHPSEVLTVGEEVEAK 253

Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
            +L  +    RV + +K    +      +       VG  + G++  +  YG F+ IE   
Sbjct: 254  ILKFDQEKNRVSLGIK----QLGDDPWVALGRRYPVGTRLFGKVTNLTDYGAFVEIE-PG 308

Query: 1482 LVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
            + GL HVSE+   + + +   I + G++V+V IL++D+++RR+SLGMK
Sbjct: 309  IEGLVHVSEMDWTNKNVHPAKIAQLGDEVEVMILEIDEDRRRLSLGMK 356



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 148/351 (42%), Gaps = 34/351 (9%)

Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
           +K G VVKG V  +  +GA V   GG+  L  +  ++   +  P +   VG E+  ++L 
Sbjct: 198 LKEGAVVKGIVKNITDYGAFVDL-GGIDGLLHITDLAWRRVKHPSEVLTVGEEVEAKILK 256

Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
              +  R+++  K+      +A+   Y   T RL   G +T +  +G FV    G++G  
Sbjct: 257 FDQEKNRVSLGIKQLGDDPWVALGRRYPVGT-RLF--GKVTNLTDYGAFVEIEPGIEGLV 313

Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-DDLV---K 668
             SE+   +    P+ +  +G  V+  I+  I   RR  LS  MK  + +  DD     K
Sbjct: 314 HVSEMDWTNKNVHPAKIAQLGDEVEVMILE-IDEDRR-RLSLGMKQCQANPWDDFAATHK 371

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSV--IKPGYEFDQ 726
            G  VSG +  +T   V +     G   G     HL+D   +    +++   K G E + 
Sbjct: 372 KGDKVSGQIKSITDFGVFI-----GLPGGIDGLVHLSDLSWNQPGEEAIRNFKKGDELEA 426

Query: 727 L-LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-----NSVVHGYVCNIIETGCFVR 780
           + L +D E   + L  K        QL SD    +       ++V G V +I   G  + 
Sbjct: 427 VVLSIDVEKERISLGVK--------QLDSDPFSAYTALNDKGAIVKGTVKSIEAKGAVIA 478

Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
               + G+   S+    +  D+S     G  + + I +++ +   I LS+K
Sbjct: 479 LDNEVEGYLRASEVSRDKVDDISTVLKEGDEIEARITNIDRKNRSIALSIK 529



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 167/412 (40%), Gaps = 65/412 (15%)

Query: 287 IDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFT 346
           +DR R  V +S       + V ++  G   + L+  +     V+ I++N      +T + 
Sbjct: 168 LDRKRNNVVVSR------RAVLEETMGADREALLESLKEGAVVKGIVKN------ITDYG 215

Query: 347 GTVDIFHLQNTFPTTNWKNDYNQH--------KKVNARILFVDPTSRAVGLTL-----NP 393
             VD+  +      T+      +H        ++V A+IL  D     V L +     +P
Sbjct: 216 AFVDLGGIDGLLHITDLAWRRVKHPSEVLTVGEEVEAKILKFDQEKNRVSLGIKQLGDDP 275

Query: 394 YLLHNRAPPSHV----KVGDIYDQSKVVRVDRGL-GLL----LDIPSTPVSTPAYVTISD 444
           ++   R  P       KV ++ D    V ++ G+ GL+    +D  +  V       + D
Sbjct: 276 WVALGRRYPVGTRLFGKVTNLTDYGAFVEIEPGIEGLVHVSEMDWTNKNVHPAKIAQLGD 335

Query: 445 VAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKG 504
             E  + ++++  +  S      LG +  +        A+ ++    TH   K G  V G
Sbjct: 336 EVEVMILEIDEDRRRLS------LGMKQCQ--------ANPWDDFAATH---KKGDKVSG 378

Query: 505 KVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG----KKFKVGAELVFRVLG--VKS 558
           ++ ++  FG  +  PGG+  L    H+S+    +PG    + FK G EL   VL   V+ 
Sbjct: 379 QIKSITDFGVFIGLPGGIDGLV---HLSDLSWNQPGEEAIRNFKKGDELEAVVLSIDVEK 435

Query: 559 KRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
           +RI++  K+          S+Y    D+  I  G +  IE  G  +   N V+G+   SE
Sbjct: 436 ERISLGVKQLDSDP----FSAYTALNDKGAIVKGTVKSIEAKGAVIALDNEVEGYLRASE 491

Query: 618 LGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL 669
           +  D   + S++   G  ++ RI +    +R I LS   K      D L K 
Sbjct: 492 VSRDKVDDISTVLKEGDEIEARITNIDRKNRSIALSIKAKDIADEADALQKF 543



 Score = 48.1 bits (113), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 121/558 (21%), Positives = 238/558 (42%), Gaps = 46/558 (8%)

Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSG-IDVKPG 277
           +L  + L+ + ++ G V+TA V SI+D   I++ GL S +  +P +    + G ++V  G
Sbjct: 16  ALFEESLARQEMRSGEVITAEVVSIDDDFVIVNAGLKSES-VIPASEFRNDRGELEVNVG 74

Query: 278 LLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGV 337
             ++  + S++       LS +         +  + ++   ++ G MV+ RV+  L   V
Sbjct: 75  DFVKVCIESLEDGYGSTKLSREKAKRLAAWQELEEAMNESRIIKG-MVNGRVKGGLT--V 131

Query: 338 ML-SFLTYFTGT-VDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYL 395
           M+ S   +  G+ VD+  +++T P  N + D+   K    R   V  + RAV   L   +
Sbjct: 132 MVNSIRAFLPGSLVDLRPVKDTTPFENKEWDFKVIKLDRKRNNVV-VSRRAV---LEETM 187

Query: 396 LHNR-APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLE 454
             +R A    +K G +     +V+     G  +D+          + I+D+A   V+   
Sbjct: 188 GADREALLESLKEGAVV--KGIVKNITDYGAFVDLG----GIDGLLHITDLAWRRVKHPS 241

Query: 455 KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGA 514
           +    G  V  +IL F   +   +  +K    +  V        G  + GKV  +  +GA
Sbjct: 242 EVLTVGEEVEAKILKFDQEKNRVSLGIKQLGDDPWVALGRRYPVGTRLFGKVTNLTDYGA 301

Query: 515 IVQFPGGVKALCPLPHMSEFEI----VKPGKKFKVGAELVFRVLGVKS--KRITVTHKKT 568
            V+   G++ L    H+SE +     V P K  ++G E+   +L +    +R+++  K+ 
Sbjct: 302 FVEIEPGIEGLV---HVSEMDWTNKNVHPAKIAQLGDEVEVMILEIDEDRRRLSLGMKQC 358

Query: 569 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEPS 627
                    +++ +  D++   G I  I   G F+    G+ G    S+L  + PG E  
Sbjct: 359 QANPWDDFAATHKKG-DKV--SGQIKSITDFGVFIGLPGGIDGLVHLSDLSWNQPGEEAI 415

Query: 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR--VSEDDLVKLGSLVSGVVDVVTPNAV 685
             +  G  ++  ++S      RI+L      +    +   L   G++V G V  +     
Sbjct: 416 RNFKKGDELEAVVLSIDVEKERISLGVKQLDSDPFSAYTALNDKGAIVKGTVKSIEAKGA 475

Query: 686 VVYVI--AKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAK 742
           V+ +    +GY + +  +    D +       +V+K G E +  +  +D ++ ++ LS K
Sbjct: 476 VIALDNEVEGYLRASEVSRDKVDDI------STVLKEGDEIEARITNIDRKNRSIALSIK 529

Query: 743 YSLI----NSAQQLPSDA 756
              I    ++ Q+  +DA
Sbjct: 530 AKDIADEADALQKFSNDA 547


>gi|374579676|ref|ZP_09652770.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
            [Desulfosporosinus youngiae DSM 17734]
 gi|374415758|gb|EHQ88193.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
            [Desulfosporosinus youngiae DSM 17734]
          Length = 659

 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 198/431 (45%), Gaps = 43/431 (9%)

Query: 1119 ARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEEC-DVSIGQRVTGYVYKVDNE 1177
            A + A ++ PD     + E+  K + +   E+      + C ++  G RVTG V K+  E
Sbjct: 252  AGLTAGASTPDW---IIEEVYKKMTEMNEQEMDMSAWVDSCPELHQGTRVTGTVVKITRE 308

Query: 1178 WALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
               + I    K +  I  +    ++    +    IG  +T  VL +  E+    L  R  
Sbjct: 309  EIFVDIG--WKCEGVIPINELSATKKTSPEDTVAIGDQITAVVLRVENEEGHTVLSKRKA 366

Query: 1238 QDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297
             +       + + + ++      + +   + +++ G  GLVV +G  L G V  ++++  
Sbjct: 367  DE-------EGAKERLEKIAESKEEIQAEVVEVVKG--GLVVDVG--LRGFVPASQIQPG 415

Query: 1298 CVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGK 1357
             V D L+ +  GQ ++ ++++     R    V LS +  L+   +   + L         
Sbjct: 416  YVED-LNQF-LGQTLRLRMIDYDPAKR---KVVLSQKVILEEERAIKRTQL--------- 461

Query: 1358 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1417
                +E L    +V G V+ +   G FI +   +D  + +S+++   ++ P +   IG  
Sbjct: 462  ----LETLKEGDVVSGTVRRMADFGAFIDIG-GIDGLLHISDMAYTRIKHPSEILTIGDE 516

Query: 1418 VAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITI 1477
            V  +VL +EP S +V + LK        Q+ +N      VG IV G++ R+ S+G F+ +
Sbjct: 517  VEVQVLKLEPQSGKVSLGLKQLKESPWEQASVN----FPVGSIVNGKVVRITSFGAFVGL 572

Query: 1478 ENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA- 1536
                + GL H+S+L++  V+ +E + + G+ V VK++    E++R+SL ++ +   ++  
Sbjct: 573  -GEGVDGLVHISQLADHRVNKVEDVVKVGDMVSVKVMDCKPEEKRMSLSIREAIADSNKE 631

Query: 1537 -DNLQMSSEEE 1546
             DN  ++S+ E
Sbjct: 632  IDNQALASQSE 642



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 152/356 (42%), Gaps = 39/356 (10%)

Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
           G  V G V+ +      V      + + P+  +S  +   P     +G ++   VL V++
Sbjct: 295 GTRVTGTVVKITREEIFVDIGWKCEGVIPINELSATKKTSPEDTVAIGDQITAVVLRVEN 354

Query: 559 KR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
           +     ++ +K   +     L   AE+ + +     + ++ K G  V    G++GF P S
Sbjct: 355 EEGHTVLSKRKADEEGAKERLEKIAESKEEI--QAEVVEVVKGGLVVDV--GLRGFVPAS 410

Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS--------FMMKPTRVSEDDLVK 668
           ++   PG        +GQ ++ R++   PA R++ LS          +K T++ E   +K
Sbjct: 411 QI--QPGYVEDLNQFLGQTLRLRMIDYDPAKRKVVLSQKVILEEERAIKRTQLLE--TLK 466

Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYEF 724
            G +VSG V  +      + +   G   G +   H++D     ++H +    ++  G E 
Sbjct: 467 EGDVVSGTVRRMADFGAFIDI---GGIDGLL---HISDMAYTRIKHPS---EILTIGDEV 517

Query: 725 D-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIH--PNSVVHGYVCNIIETGCFVRF 781
           + Q+L L+ +S  + L  K       ++ P + + ++    S+V+G V  I   G FV  
Sbjct: 518 EVQVLKLEPQSGKVSLGLK-----QLKESPWEQASVNFPVGSIVNGKVVRITSFGAFVGL 572

Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
              + G    S+  D +   +     VG  V   ++D   E  R++LS++++   S
Sbjct: 573 GEGVDGLVHISQLADHRVNKVEDVVKVGDMVSVKVMDCKPEEKRMSLSIREAIADS 628



 Score = 49.7 bits (117), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 154/385 (40%), Gaps = 63/385 (16%)

Query: 758  HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817
             +H  + V G V  I     FV    +  G  P ++    ++     T  +G  + + +L
Sbjct: 291  ELHQGTRVTGTVVKITREEIFVDIGWKCEGVIPINELSATKKTSPEDTVAIGDQITAVVL 350

Query: 818  DVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSV 877
             V +E G   LS +++     D    +E     EKIA    SK                 
Sbjct: 351  RVENEEGHTVLSKRKA-----DEEGAKERL---EKIA---ESKEE--------------- 384

Query: 878  IEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES-----GSVIQAAILDVAKAER 932
            I+ +V E    G+VV       + GF+   Q+    VE      G  ++  ++D   A+R
Sbjct: 385  IQAEVVEVVKGGLVVDV----GLRGFVPASQIQPGYVEDLNQFLGQTLRLRMIDYDPAKR 440

Query: 933  LVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPE 992
             V LS K +            +A K+ +  E  K+  V   V+  V  + +    + +  
Sbjct: 441  KVVLSQKVIL--------EEERAIKRTQLLETLKEGDV---VSGTVRRMADFGAFIDIGG 489

Query: 993  YNHSIGYASVSD--YNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETS 1050
             +   G   +SD  Y   K P +    G  V   V+ L   S  G++ L LK + E    
Sbjct: 490  ID---GLLHISDMAYTRIKHPSEILTIGDEVEVQVLKLEPQS--GKVSLGLKQLKE---- 540

Query: 1051 SSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSN 1110
             S   +   ++ VGS+V  ++  I      +  G G  G +HI+++ D + N VE++   
Sbjct: 541  -SPWEQASVNFPVGSIVNGKVVRITSFGAFVGLGEGVDGLVHISQLADHRVNKVEDV--- 596

Query: 1111 FKIGQTVTARIIAKSNKPDMKKSFL 1135
             K+G  V+ +++    KP+ K+  L
Sbjct: 597  VKVGDMVSVKVM--DCKPEEKRMSL 619



 Score = 44.3 bits (103), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 12/99 (12%)

Query: 1370 IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS 1429
            IV G V  +TS G F+ L   +D  V +S L+D  V   E    +G +V+ +V+  +P  
Sbjct: 555  IVNGKVVRITSFGAFVGLGEGVDGLVHISQLADHRVNKVEDVVKVGDMVSVKVMDCKPEE 614

Query: 1430 KRVEVTLKTS---------DSRTASQSEINNLSNLHVGD 1459
            KR+ ++++ +         +   ASQSEI  ++   +GD
Sbjct: 615  KRMSLSIREAIADSNKEIDNQALASQSEIKPVT---IGD 650



 Score = 43.9 bits (102), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 21/219 (9%)

Query: 366 DYNQH--KKVNARILFVDPTSRAVGLTLNPYLLHNRAPP-----SHVKVGDIYDQSKVVR 418
           D NQ   + +  R++  DP  R V L+    L   RA         +K GD+   S  VR
Sbjct: 419 DLNQFLGQTLRLRMIDYDPAKRKVVLSQKVILEEERAIKRTQLLETLKEGDVV--SGTVR 476

Query: 419 VDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEG--- 475
                G  +DI          + ISD+A   ++   +    G  V V++L      G   
Sbjct: 477 RMADFGAFIDIGGID----GLLHISDMAYTRIKHPSEILTIGDEVEVQVLKLEPQSGKVS 532

Query: 476 LATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFE 535
           L    LK S +E       +   G +V GKV+ + SFGA V    GV  L  +  +++  
Sbjct: 533 LGLKQLKESPWEQ---ASVNFPVGSIVNGKVVRITSFGAFVGLGEGVDGLVHISQLADHR 589

Query: 536 IVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKS 572
           + K     KVG  +  +V+  K   KR++++ ++ +  S
Sbjct: 590 VNKVEDVVKVGDMVSVKVMDCKPEEKRMSLSIREAIADS 628


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.316    0.134    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,556,527,214
Number of Sequences: 23463169
Number of extensions: 1197798797
Number of successful extensions: 4418614
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6948
Number of HSP's successfully gapped in prelim test: 9055
Number of HSP's that attempted gapping in prelim test: 4279986
Number of HSP's gapped (non-prelim): 96005
length of query: 1924
length of database: 8,064,228,071
effective HSP length: 158
effective length of query: 1766
effective length of database: 8,652,014,665
effective search space: 15279457898390
effective search space used: 15279457898390
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 85 (37.4 bits)