BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000176
(1924 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
Length = 1871
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/1965 (29%), Positives = 949/1965 (48%), Gaps = 205/1965 (10%)
Query: 54 FPRGGGHSLTQRERD-EIHAEVDAEFE-AVERGLHKKNKKKK--KKTERKANETVDDLGS 109
FPRGG + + E+ + E D F+ + E G K+ K +K KT++ E +
Sbjct: 8 FPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRE---- 63
Query: 110 LFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168
S K R +I +++++ GM++ G V EVNE +LVI LP GL+G + + D
Sbjct: 64 ------SSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICD 117
Query: 169 PILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLL 221
NE E L LP +F G LV C+V L + GK+ + LSL +
Sbjct: 118 AYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDR--GKKSVKLSLNPKNV 175
Query: 222 YKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKP 276
+ LS E ++ GM+LT V S+EDHGY++ G+ FLP E N G +K
Sbjct: 176 NRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKV 235
Query: 277 GLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENG 336
G L +V + VV LS VS + + + +++ L+PG++V +VQ + G
Sbjct: 236 GQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTPFG 295
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396
+ L+FLT+FTG VD HL T + N + V A IL V P +R V L+L P L
Sbjct: 296 LTLNFLTFFTGVVDFMHLDPKKAGTYFSN-----QAVRACILCVHPRTRVVHLSLRPIFL 350
Query: 397 HNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKL 453
P + + +G + D V + G + + AY +S +++ +
Sbjct: 351 QPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVL---AYARLSHLSDSKNVFN 407
Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
+ +K G+ + RI+ + ++ LA L+ S E + D++PG VVKG V+ + S+G
Sbjct: 408 PEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYG 467
Query: 514 AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTLVK 571
+V+ ++ L P H+++ + P KK+ +G E+ RVL ++K++ +T KKTL++
Sbjct: 468 MLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIE 527
Query: 572 SKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYH 631
SKL +++ YA+A L THG+I +++ +GC V+FYN VQG P+ EL + +P +++
Sbjct: 528 SKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFY 587
Query: 632 VGQVVKCRIMSSIPASRRINLSFMM--------KPTRVSED--DLVKLGSLVSGVVDVVT 681
GQVVK +++ P+ R+ LSF + +P S+ + +G LV V T
Sbjct: 588 TGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKT 647
Query: 682 PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741
+ + V V+ + +PT HL+DH+ + ++ ++ G ++L L +LL
Sbjct: 648 KDGLEVAVLPHNI-RAFLPTSHLSDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCR 706
Query: 742 KYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799
K +L+++ + Q P + S IHP ++ G+V +I + G F++F L+G AP++ D
Sbjct: 707 KPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFV 766
Query: 800 ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQS- 858
S + GQ+V + + +V+ E R+ LSL+ S C D + + LL + + LQ
Sbjct: 767 TSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEELQGV 825
Query: 859 ----SKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGAT 913
S + ++ + G ++ V E D VV S D+ + + AG
Sbjct: 826 RSLMSNRDSVLIQTLAEMTPGMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQE 885
Query: 914 VESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQT 973
VESG + IL+V + V +SL + NR+A+K ++ E HQ
Sbjct: 886 VESGQKKKVVILNVDLLKLEVHVSLHQDLV--------NRKARKLRKGSE-------HQ- 929
Query: 974 VNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSS 1032
AIV+ +++++ + SL E H ++ S N T +F ++ GQ V T+
Sbjct: 930 --AIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLKTTEPGV 987
Query: 1033 TAGRLLLLLKAISETETSSSKRAK-----------------KKSSYDVGSLVQAEITEIK 1075
T L + A T + K ++ KK + +G +V + IK
Sbjct: 988 TGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIK 1047
Query: 1076 PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFL 1135
P + + G G IH + + DD + K+G+TVTAR+I DM K+F
Sbjct: 1048 PTHVVVTLEDGIIGCIHASHILDDVPEGTSPT-TKLKVGKTVTARVIGGR---DM-KTFK 1102
Query: 1136 W-------------ELSIKPSML----TVSEIGSKLLFEEC-DVSIGQRVTGYV--YKVD 1175
+ ELS++PS L T S E+ GQ VT ++ Y V
Sbjct: 1103 YLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVV 1162
Query: 1176 NEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLR 1235
+W + I+ ++ ++ +L ++ L+ ++F +G+A+ V+ + K LL L L
Sbjct: 1163 KKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLT 1222
Query: 1236 -PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL 1294
P + + EG++ GR+ K+ GL V G V +
Sbjct: 1223 GPHK------------------LEEGEVAMGRVVKVTPN-EGLTVSFPFGKIGTVSIFHM 1263
Query: 1295 KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354
+ PL + + V+C +L + V + LSLR SS + + + V+
Sbjct: 1264 SDSYSETPLEDFVPQKVVRCYILSTADNV-----LTLSLR------SSRTNPETKSKVED 1312
Query: 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE--- 1411
P + I+D+ +++GYV ++ G F L + V L+ S SP K+
Sbjct: 1313 P--EINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSV---VGLARYSHVSQHSPSKKALY 1367
Query: 1412 ---FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1468
P GKL+ RVL + VE++ D+ + + LS G + + ++
Sbjct: 1368 NKHLPEGKLLTARVLRLNHQKNLVELSFLPGDT-----GKPDVLSASLEGQLTKQEERKT 1422
Query: 1469 ESYGLFITIENTNLVGLCHVSELSEDHVD----------NIETIYRAGEKVKVKILKVDK 1518
E+ E N ++ ++ V+ + R G + + +
Sbjct: 1423 EAEERDQKGEKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECR----ESGS 1478
Query: 1519 EKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESE 1578
E+ R+S K + + D+L E E EE + E + + ++
Sbjct: 1479 EQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPK----EKQTKPAEAPRLQLS 1534
Query: 1579 DGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEK 1638
G + + ++PPL + D E+ + + +A K R +K
Sbjct: 1535 SGFAWNVGLDSLTPALPPLAESSDSEEDEKPH----------QATIKKSKKERELEK--- 1581
Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
++ E+E+ EE L++ P + D+F+RLV SSPNSS +W++YMAF L ++EKAR++
Sbjct: 1582 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1641
Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
AERAL+TI+ REE EKLN+WVA NLEN YG+ +E++ KVF+RA+QY +P KV L L
Sbjct: 1642 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1699
Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1816
+Y ++E+ + A EL +M+K+F+ VW++ LL++ Q V+QRAL LP +
Sbjct: 1700 IYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKE 1759
Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
H+ I++ A LEF+ G A+R +++FE LS YPKRTD+WS+Y+D I+ G +R +FE
Sbjct: 1760 HVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFE 1819
Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
R I LSL PK+MKF FK+YL+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1820 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1864
>sp|O74835|RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rrp5 PE=1 SV=1
Length = 1690
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 389/1382 (28%), Positives = 653/1382 (47%), Gaps = 187/1382 (13%)
Query: 609 VQGFAPRSEL------GLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM-----K 657
+ GFA S L G+ P P Y V + RI++ LSF +
Sbjct: 424 ISGFAHISRLSDKKVAGISPNSGP---YKVDSTHEARIINYSYVDNLYILSFQQSVLNQQ 480
Query: 658 PTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATV 713
R+ + +++G V G + + P +VV I++G + G +P+ H+AD E
Sbjct: 481 FLRIED---IEVGQFVDGTIAKLIPQGIVV-TISEGIN-GLVPSTHMADIALQFPERRFK 535
Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773
+ S +K ++L + +LL+ K SL+N+ L D P + G + I
Sbjct: 536 VGSSVKC-----RVLSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIF 590
Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
E G V F + F P S+ + D + + VGQ++ I+ + E ++ + ++
Sbjct: 591 EDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQ 650
Query: 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
S DA L+ E GSV+ G V + + V+V
Sbjct: 651 ---SWDAK-----------------------RLERFENIKAGSVLSGIVLQKTEDSVIVD 684
Query: 894 FEEHSDVYGFITHHQLAGATVESGSVI-----------QAAILDVAKAERLVDLSLKTVF 942
+ V G IT QL + S + + +L +++L+ LSLK
Sbjct: 685 LGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSL 742
Query: 943 IDRFREANSNRQAQKKKRKREASKDLGV---HQTVNAIVEIVKENYLVLSLPEYNHSIGY 999
++ +E NR +E K G T VE + LV +P+ S Y
Sbjct: 743 VEAAKE---NRMPINITDLKEGIKYFGFVRNATTFGVFVEFC--DGLVALVPKAYISEEY 797
Query: 1000 ASVSDYNTQKFPQKQFLNGQSVIATVMAL------------PSSSTAGRLLLLLKAISET 1047
V P + QSV +++ P + + + +++ +
Sbjct: 798 VPV--------PSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDI 849
Query: 1048 ETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVE-- 1105
+ + KK Y G + A +T K +L + HGR+ ++EV D+ +V+
Sbjct: 850 DNPVDETIKKTYDYVAGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPN 909
Query: 1106 NLFSNFKIGQTVTARIIAKSNKPDMK----------KSFLWELSIKPSMLTVSEIGSKLL 1155
F G + R++ + + K K FL ELS++PS+L + K
Sbjct: 910 KPLKRFHKGDKIRVRVLGIHDSRNHKFLPISHRVSPKQFL-ELSVRPSILNMEPFSMK-- 966
Query: 1156 FEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKA 1215
E G VTG+V V E ++++ + ++ ILD + EL Q+ F +GKA
Sbjct: 967 --EPQFKKGDEVTGFVNNVSKECVWVSLTPSVNGRIPILDLTTDVKELNSLQKHFFLGKA 1024
Query: 1216 VTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG 1275
+ +V +N E + + P Q G + T G + G+++ +
Sbjct: 1025 IKCYV--VNAEDSITLSAIGPLQ-GFENLT-------------PGSRLVGKVTNV--NEA 1066
Query: 1276 GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
G ++Q+ H+ GRV ++ + P + + V VL + R
Sbjct: 1067 GAILQLPGHMSGRVSRIDMFDDYDILPETKFTRNNLVGVCVLSVDVPNRKV--------- 1117
Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
+S+ NS S V+ K + ++DL I +G+V NV ++G F+ + L A+V
Sbjct: 1118 ---ALSARNSRTQSQPVEIKDKEINSVDDLKIGDICRGFVCNVANQGLFVTIGHNLIARV 1174
Query: 1396 LLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEIN-NLSN 1454
+ L D +++ + F + +LV G ++ ++ SKR+E++LK S + SEI ++
Sbjct: 1175 KIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQS--KIKDSSEITKTFAD 1232
Query: 1455 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
+ VG + G + +V YG+ I I+ T N+VGLCH SE+++ V NI +Y +G+KV+ +
Sbjct: 1233 IAVGSNLDGTVVKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHV 1292
Query: 1514 LKVDKEKRRISLGMKSSYFKN--------DADNLQMSSEEESDEAIEEVGSYNRSSLLEN 1565
L VD EKRRI+LG+KSSYF + + ++++M SE++SD + EVGS +
Sbjct: 1293 LDVDSEKRRIALGLKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEVGSKD------- 1345
Query: 1566 SSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD--MDNGISQNQGHT--DE 1621
D++SE+ +L A E ++E+P NG G T D+
Sbjct: 1346 --------DVQSEEVENLESAGDED-----------EEEEPSALQANGFDWTDGSTVFDK 1386
Query: 1622 AKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKY 1681
E + ++ K ++ + R +E + P T +FER + SSPNSS +WI Y
Sbjct: 1387 LADDTEDSEDEEDEEPKRKKSKSDRFDDEEKDLDEIPSTAADFERQLLSSPNSSLLWISY 1446
Query: 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741
MA+ L++ ++++AR + +RAL TIN REE+EKLN+W+A NLE YG E+++ +VF+
Sbjct: 1447 MAYHLNLNELQEAREVGKRALSTINYREEDEKLNVWMALLNLEVAYGT--EDSLKEVFKE 1504
Query: 1742 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQ-EG 1800
A YCD V+ L G+ + + LADE + M+K FK VW++ LL + E
Sbjct: 1505 ACAYCDALIVYEKLCGILIKGGKVDLADEYMQLMLKNFKQVPSVWIQYATFLLNNDKAEK 1564
Query: 1801 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860
+++R+L SLP+ +H+ I + AILEFKNG +RGR++FEG+LS YPKR DLW++ +D
Sbjct: 1565 AHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPERGRTIFEGLLSSYPKRLDLWNVLID 1624
Query: 1861 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920
E++ D ++R LF+R ++L+L KK KF FKK+L YEK++G++E E VK++A+EYV
Sbjct: 1625 MEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKWLAYEKNIGDDEGAEQVKRRAIEYVS 1684
Query: 1921 ST 1922
+
Sbjct: 1685 ES 1686
Score = 228 bits (581), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 227/818 (27%), Positives = 373/818 (45%), Gaps = 62/818 (7%)
Query: 54 FPRGGGHSLTQRERDEIHAEVDAEFEAVERGLHKKNKKKKKKTERKANETVDDLGSLFGD 113
FPRGG SLT E E E +F G + +KK + K + + +L +
Sbjct: 35 FPRGGASSLTPLEYKEAVLEAKKDFMESASGTAELSKKTRPKKKGSKKSSKSELDN---- 90
Query: 114 GISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLA-------RAADA 166
L + + KNI+ G + G +A++N DL + LP L G + +D
Sbjct: 91 --EENLKVHIQSLRYKNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDR 148
Query: 167 LDPILDNEIEAN-----EDNL-----LPTIFHVGQLVSCIVLQL-DDDKKEIGKRKIWLS 215
LD I DN E N ED L L ++ VGQ V V L ++ + GKR I LS
Sbjct: 149 LDSI-DNHAEDNAATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELS 207
Query: 216 LRLSLLYKGLSLETVQ--EGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGID 273
L+ G + E G ++ A V SIEDHG + G+ ++TGFL + ++ N
Sbjct: 208 LKPQDA-NGSAPEAADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKKHI--NDFPF 264
Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGI-SIDLLVPGMMVSTRVQSI 332
V+ LL V+ DR + +LS ++ TK L+ + S+ ++PG ++ V I
Sbjct: 265 VEGQSLLCSVISKEDR---IFHLS-----LTATSTKALEVMPSVQAILPGDYINVLVTDI 316
Query: 333 LENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFV---DPTSRAVG- 388
E+GV+ ++ T DI+H + + ++ + K V AR+LFV DP AV
Sbjct: 317 KESGVIAKYMGVVDVTSDIYH-SSPVKGEDLEDKFQLAKSVPARVLFVIPGDPPKIAVSF 375
Query: 389 ----LTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVT-IS 443
LT N + N P + +G I + +KV V LG+ D+ +S A+++ +S
Sbjct: 376 LPHVLTFN-FATPNTPHPDQLDIGFIVNAAKVTYVSSSLGVFCDVGVPEISGFAHISRLS 434
Query: 444 DVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVK 503
D + YK S RI+ + +++ L + S D++ G V
Sbjct: 435 DKKVAGISPNSGPYKVDSTHEARIINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFVD 494
Query: 504 GKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRI 561
G + + G +V G+ L P HM++ + P ++FKVG+ + RVL V KR+
Sbjct: 495 GTIAKLIPQGIVVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRV 554
Query: 562 TVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD 621
+T KK+L+ + L ++ Y +AT T G + +I + G V FYN V+ F P SE+
Sbjct: 555 LLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEA 614
Query: 622 PGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK---PTRVSEDDLVKLGSLVSGVVD 678
+ + VGQ + I+S P +R++ + + R+ + +K GS++SG+V
Sbjct: 615 YIRDAREHFKVGQTLSVTIVSCDPENRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVL 674
Query: 679 VVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
T ++V+V + K G I L D L + + + ++ + ++LVL ++S
Sbjct: 675 QKTEDSVIVDLGDK--VTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKK 732
Query: 738 L--LSAKYSLINSAQQ--LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793
L LS K SL+ +A++ +P + + + G+V N G FV F L P++
Sbjct: 733 LISLSLKKSLVEAAKENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKAY 792
Query: 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+ S Y QSV L V + +S K
Sbjct: 793 ISEEYVPVPSAVYKPQQSVTCVCLSVELSQEKAFMSFK 830
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 194/911 (21%), Positives = 349/911 (38%), Gaps = 174/911 (19%)
Query: 126 ITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPT 185
+ +++I G + G +A++ + +V+ + G+ GL + D L
Sbjct: 482 LRIEDIEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTHMADIAL---------QFPER 532
Query: 186 IFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSL----ETVQEGMVLTAYVK 241
F VG V C VL + + ++++ L+L+ SLL L L E G +
Sbjct: 533 RFKVGSSVKCRVLSTN-----VLRKRVLLTLKKSLLNTDLPLIYDYEQATPGTQTVGTLA 587
Query: 242 SIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301
I + G I+ F S FLP + ++E D + + +T V +S DP+
Sbjct: 588 RIFEDGAIVEF-YNSVRAFLPVSEMSEAYIRDAREHF-------KVGQTLSVTIVSCDPE 639
Query: 302 TVSKCV-----TKDLKGIS-IDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355
V + D K + + + G ++S V E+ V++ TG + + L
Sbjct: 640 NRKMRVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDKVTGVITLGQLC 699
Query: 356 NTFPTTNWKNDYNQHKKVNAR-----------ILFVDPTSRAVGLTLNPYLLH----NRA 400
+ D N+ KV + +L D + + + L+L L+ NR
Sbjct: 700 D--------GDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRM 751
Query: 401 PPSHVKVGDIYDQSK---VVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKY 457
P + + D+ + K VR G+ ++ V A V + ++EE V Y
Sbjct: 752 P---INITDLKEGIKYFGFVRNATTFGVFVEFCDGLV---ALVPKAYISEEYVPVPSAVY 805
Query: 458 KEGSCVRVRIL--------GFRHLEGLATGILKASAF------------EGLVFTHSDVK 497
K V L F + LA KA F E + T+ D
Sbjct: 806 KPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDIDNPVDETIKKTY-DYV 864
Query: 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF--EIV---KPGKKFKVGAELVFR 552
G + V + + V V + + + EIV KP K+F G ++ R
Sbjct: 865 AGKITWAVVTSAKASQLNVDLAANVHGRVDVSEVFDNFGEIVDPNKPLKRFHKGDKIRVR 924
Query: 553 VLGVKSKR----ITVTHK-------KTLVKSKLAILSSYAEATDRLI----THGWITKIE 597
VLG+ R + ++H+ + V+ + + ++ + G++ +
Sbjct: 925 VLGIHDSRNHKFLPISHRVSPKQFLELSVRPSILNMEPFSMKEPQFKKGDEVTGFVNNVS 984
Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM---YHVGQVVKCRIMSSIPASRRINLSF 654
K +V V G P +L D E +S+ + +G+ +KC +++ A I LS
Sbjct: 985 KECVWVSLTPSVNGRIPILDLTTDVK-ELNSLQKHFFLGKAIKCYVVN---AEDSITLS- 1039
Query: 655 MMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714
+ P + E +L LV V +V A++ G+ G + + D +
Sbjct: 1040 AIGPLQGFE-NLTPGSRLVGKVTNVNEAGAILQL---PGHMSGRVSRIDMFDDYD----- 1090
Query: 715 KSVIKPGYEFDQ-------LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSV--- 764
I P +F + +L +D + + LSA+ S Q P + NSV
Sbjct: 1091 ---ILPETKFTRNNLVGVCVLSVDVPNRKVALSARNS---RTQSQPVEIKDKEINSVDDL 1144
Query: 765 -----VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819
G+VCN+ G FV L + D D ++V Q V+ +I+ +
Sbjct: 1145 KIGDICRGFVCNVANQGLFVTIGHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGI 1204
Query: 820 NSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIE 879
++++ RI +SLKQS D+S + + F +GS ++
Sbjct: 1205 DNDSKRIEMSLKQS--KIKDSSEITKTF----------------------ADIAVGSNLD 1240
Query: 880 GKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAER 932
G V + D+GV++ + ++ G ++A A V SG ++A +LDV +R
Sbjct: 1241 GTVVKVGDYGVLIRIDGTDNIVGLCHKSEIADAVVLNISKLYSSGDKVRAHVLDVDSEKR 1300
Query: 933 LVDLSLKTVFI 943
+ L LK+ +
Sbjct: 1301 RIALGLKSSYF 1311
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 184/846 (21%), Positives = 321/846 (37%), Gaps = 145/846 (17%)
Query: 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAP----------RSKAVDG---------- 797
+I P S++ G + I V LTG+ P R ++D
Sbjct: 105 NITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNAATEE 164
Query: 798 -----QRADLSKTYYVGQSVRSNILDVNSE----TGR--ITLSLKQSCCSSTDASFMQEH 846
Q DL Y VGQ VR ++ + SE TG+ I LSLK DA
Sbjct: 165 EDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQ-----DA------ 213
Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVY-GFIT 905
NGS + + F+ GS+I+ V D G+V F+ + Y GF++
Sbjct: 214 ---------------NGSAPEAAD-FVAGSMIQAVVSSIEDHGIV--FDIGINNYTGFLS 255
Query: 906 HHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 965
+ G + ++ ++K +R+ LSL ++
Sbjct: 256 KKHINDFPFVEGQSLLCSV--ISKEDRIFHLSLTAT----------------------ST 291
Query: 966 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKF---PQK------QFL 1016
K L V +V AI+ N LV + E Y V D + + P K +F
Sbjct: 292 KALEVMPSVQAILPGDYINVLVTDIKESGVIAKYMGVVDVTSDIYHSSPVKGEDLEDKFQ 351
Query: 1017 NGQSVIATVM-ALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIK 1075
+SV A V+ +P + L + T ++ D+G +V A
Sbjct: 352 LAKSVPARVLFVIPGDPPKIAVSFLPHVL--TFNFATPNTPHPDQLDIGFIVNAAKVTYV 409
Query: 1076 PLELRLKFGIG---FHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKK 1132
L + +G G HI+ ++D K + +K+ T ARII S +
Sbjct: 410 SSSLGVFCDVGVPEISGFAHISRLSDKKVAGISPNSGPYKVDSTHEARIINYSYVDN--- 466
Query: 1133 SFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
L+ LS + S+L + L E D+ +GQ V G + K+ + ++TIS +
Sbjct: 467 --LYILSFQQSVLN-----QQFLRIE-DIEVGQFVDGTIAKLIPQGIVVTISEGING--L 516
Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDN 1252
+ + LQ +RRF +G +V VLS N +K + L L+ + + + + D
Sbjct: 517 VPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLK---KSLLNTDLPLIYDY 573
Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
Q G G +++I G +V+ + + +E+ + D + GQ +
Sbjct: 574 EQA--TPGTQTVGTLARIFE--DGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTL 629
Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
++ R + + R S D K LE+ E++ ++
Sbjct: 630 SVTIVSCDPENR---KMRVGCREQ------------SWD----AKRLERFENIKAGSVLS 670
Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEF----PIGKLVAGRVLSVEPL 1428
G V T + L K+ + L L DG + K KL VL +
Sbjct: 671 GIVLQKTEDSVIVDLGDKVTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTS 730
Query: 1429 SKRVEVTLKTSDSRTASQSEIN-NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
K + ++LK S A ++ + N+++L G G ++ ++G+F+ + LV L
Sbjct: 731 KKLISLSLKKSLVEAAKENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCD-GLVALVP 789
Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1547
+ +SE++V +Y+ + V L V+ + + + K K + M S+ +
Sbjct: 790 KAYISEEYVPVPSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKAVEFMESKYDI 849
Query: 1548 DEAIEE 1553
D ++E
Sbjct: 850 DNPVDE 855
>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2
Length = 1862
Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust.
Identities = 406/1482 (27%), Positives = 685/1482 (46%), Gaps = 172/1482 (11%)
Query: 54 FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
FPRGG L + E+ +V E ++R +K K KK + + +++
Sbjct: 8 FPRGGTRKLHKSEKSSQQVVEQDNLFDVSTEEGPIKRKKSQKGPAKTKKLKIEKRKSIKS 67
Query: 107 LGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADA 166
+ F ++L+++ GM++ G V EV+E +LV+ LP GL+G + +
Sbjct: 68 IKEKF------------EILSLESLCEGMRILGCVKEVSELELVVSLPNGLQGFVQVTEV 115
Query: 167 LDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLS 219
D NE A E+ L LP +F G LV C+V LD E GK+ + LS+
Sbjct: 116 CDAYTQKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLD--VTESGKKSVKLSVNPK 173
Query: 220 LLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDV 274
+ K LS + ++ GM+LT V S+EDHGY++ G+ FL E N G
Sbjct: 174 RVNKVLSADALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLKKAQEYIRQKNKGAKF 233
Query: 275 KPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILE 334
K G L VV + VV LS + VS + + +++ L+PG++V +VQ + +
Sbjct: 234 KVGQYLTCVVEEVKSNGGVVSLSVEHSEVSSAFATEEQSWNLNNLLPGLLVKAQVQKVTQ 293
Query: 335 NGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPY 394
G+ L+FLT+F G VD HL+ Y+ ++ V A IL V P +R V L+L P
Sbjct: 294 FGLQLNFLTFFKGLVDFMHLE-----PKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPI 348
Query: 395 LLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVR 451
LH P + + ++G + D V + G + + + AY +S +++ +
Sbjct: 349 FLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIFRLKDGVL---AYARVSHLSDSKKA 405
Query: 452 KLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDS 511
+ +K GS + RI+ + ++ LA L+ S + D+K G VVKG V+A+
Sbjct: 406 FNAEAFKPGSTHKCRIIDYSQMDELALLSLRKSIIAAPFLRYHDIKIGTVVKGTVLAIKP 465
Query: 512 FGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKTL 569
FG +V+ +K L P H+++ + P KK+ G E+ RVL ++K++ +T KKTL
Sbjct: 466 FGILVKVGEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTL 525
Query: 570 VKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSM 629
V SKL++++ Y A L THG I +++ +GC V+FYN VQG P+ EL +P ++
Sbjct: 526 VTSKLSLITCYEGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETV 585
Query: 630 YHVGQVVKCRIMSSIPASRRINLSF-MMKPTRVSEDDL---------VKLGSLVSGVVDV 679
++ GQVVK ++S P+ R+ LSF ++ +R + + V++G LV V
Sbjct: 586 FYTGQVVKVAVLSCEPSKERMLLSFRLLSDSRPKDPGVESSQKKTGAVRIGQLVDVKVLE 645
Query: 680 VTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLL 739
T + V ++ + +PT HL+DH + ++ ++ G ++L L ++LL
Sbjct: 646 KTKTGLEVAILPHN-TPAFLPTPHLSDHAANGPLLHHWLQTGDTLHRVLCLSQSERHILL 704
Query: 740 SAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
K +L+++ + Q P S I P ++ G+V I E G FV+F L+G +P++ D
Sbjct: 705 CRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK 764
Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS---STDASFMQEHFLLEEKIA 854
S+ + GQ+V + + +V+ R+ LSL+ S CS S SF+ LEE
Sbjct: 765 FVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQG 824
Query: 855 MLQ-SSKHNGSELKWVEGFIIGSVIEGKVHES-NDFGVVVSFEEHSDVYGFITHHQLAGA 912
+ S + ++ + G V++ VHE D VV S + D+ + + AG
Sbjct: 825 IRSLMSNQDSVLIQTLADMTPGMVLDAVVHEVLEDGSVVFSSDPVPDLVLRASRYHRAGQ 884
Query: 913 TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQ 972
VE G + +L V + V +SL ++R K ++ R++S+ HQ
Sbjct: 885 EVEPGQKKKVVVLHVDMLKLEVHVSLHQDLVNR-----------KTRKLRKSSR----HQ 929
Query: 973 TVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS 1031
IV+ ++E++ V SL E H + ++ +S N T F ++ GQ V T+
Sbjct: 930 ---GIVQHLEESFAVASLVETGHLVAFSLISHLNDTFHFDSEKLRVGQGVCLTLKTTEPG 986
Query: 1032 STAGRLLLLLKAIS----------ETETSSSK--------------------RAKKKSSY 1061
T L+L ++ + ++ET K ++KK+ S
Sbjct: 987 VTG--LILAVEGPASKRTRMPVQRDSETVDDKGEEKEEEEEEEEKEEENLTVKSKKRHSL 1044
Query: 1062 DVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121
+G V I +K + + GF G IH + + DD V + + K G+ VTAR+
Sbjct: 1045 AIGDKVTGTIKAVKATHVVVTLADGFVGCIHASRILDD-VPVGTSPTTTLKAGKKVTARV 1103
Query: 1122 IA----KSNK--PDMKKSF---LWELSIKPSMLTVSEIGSKLLFEECDVSI-----GQRV 1167
I K++K P F + ELS++PS L S E I GQ V
Sbjct: 1104 IGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHSESPVEKIRQYQAGQTV 1163
Query: 1168 TGYV--YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINK 1225
T + Y V +W + I ++ ++ +L ++ L+ ++F +G+A+ V+ +
Sbjct: 1164 TCFFKKYNVMKKWLEVDIGPDIRGRIPLLLTSLSFKVLKHPDKKFQVGQAIEATVVDPDV 1223
Query: 1226 EKKLLRL-VLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPH 1284
+ L L ++ P++ + EG++ GR+ K++ GL V
Sbjct: 1224 PRAFLCLSLIGPYR------------------LEEGEVAMGRVMKVVPN-RGLTVSFPFG 1264
Query: 1285 LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTN 1344
G+V L + PL + + V+C +L + V + LSLRSS + N
Sbjct: 1265 KIGKVSMFHLSDSYSEAPLEDFCPQKIVRCYILSTAHRV-----LALSLRSSRTNRETKN 1319
Query: 1345 SSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1404
++ P + IED+ +++GYVK V I L + S++S+
Sbjct: 1320 R------IEDP--EINSIEDVKEGQLLRGYVKCVLPSSVIIGLGPSVLGLAKYSHVSECV 1371
Query: 1405 VESPEKE-----FPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441
PEKE P GKLV +VL V P+ +E++L SD+
Sbjct: 1372 --PPEKELYNGCLPEGKLVTAKVLRVNPMKNLIELSLLPSDT 1411
Score = 280 bits (716), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 199/285 (69%), Gaps = 4/285 (1%)
Query: 1639 EEREQEIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSI 1697
++ E+E+ EE L++ P + D+F+RLV SSPNSS +W++YMAF L ++EKAR++
Sbjct: 1573 QKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAV 1632
Query: 1698 AERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1757
AERAL+TI+ REE EKLN+WVA NLEN YG+ +E++ KVF+RA+QY +P KV L L
Sbjct: 1633 AERALKTISFREEQEKLNVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLAD 1690
Query: 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGV-QAVVQRALLSLPRHK 1816
+Y ++E+ K A EL +M+K+F+ VW++ +L + Q G V+QRAL LP +
Sbjct: 1691 IYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKE 1750
Query: 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876
H+ I + A LEF+ G +R +++FE LS YPKRTD+WS+Y+D I+ G +R +FE
Sbjct: 1751 HVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFE 1810
Query: 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
R I LSL PK+MKF FK+YL+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1811 RVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEA 1855
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 138/321 (42%), Gaps = 40/321 (12%)
Query: 1214 KAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVG-----GRIS 1268
+ V +L ++ +++RL LRP IS + + + + G G I
Sbjct: 325 QTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGAVLDDVPVQGFFKNAGAIF 384
Query: 1269 KILSGVGGLVVQIGPHLYGRV-HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTF 1327
++ GV Y RV H ++ K ++ + G KC++++ S+
Sbjct: 385 RLKDGVLA---------YARVSHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDELAL 432
Query: 1328 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1387
LSLR S+ + P + D+ +V+G V + G + +
Sbjct: 433 ---LSLRKSI--------------IAAP---FLRYHDIKIGTVVKGTVLAIKPFGILVKV 472
Query: 1388 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
++ V +L+D +++PEK++ G V RVL +P +K++ +TLK + T+ S
Sbjct: 473 GEQIKGLVPSMHLADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLV-TSKLS 531
Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
I G G I RV+ YG + N ++ GL ELS H+ + ET++ G+
Sbjct: 532 LITCYEGAKPGLQTHGVIIRVKDYGCIVKFYN-DVQGLVPKHELSTQHIPDPETVFYTGQ 590
Query: 1508 KVKVKILKVDKEKRRISLGMK 1528
VKV +L + K R+ L +
Sbjct: 591 VVKVAVLSCEPSKERMLLSFR 611
Score = 41.6 bits (96), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 102/458 (22%), Positives = 180/458 (39%), Gaps = 47/458 (10%)
Query: 1079 LRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138
RLK G+ + R+ + ++D K FK G T RII S + L L
Sbjct: 384 FRLKDGVLAYARV--SHLSDSKKAFNAE---AFKPGSTHKCRIIDYSQMDE-----LALL 433
Query: 1139 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198
S++ S++ D+ IG V G V + L+ + +K +
Sbjct: 434 SLRKSIIAAP------FLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKG--LVPSMHL 485
Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
++ ++++ G V VL + E K L + L+ KT+ S ++ T +
Sbjct: 486 ADIMMKNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLK--------KTLVTSKLSLIT-CY 536
Query: 1259 EGDIVGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
EG G + ++ V G +V+ + G V EL + DP + + GQ VK V
Sbjct: 537 EGAKPGLQTHGVIIRVKDYGCIVKFYNDVQGLVPKHELSTQHIPDPETVFYTGQVVKVAV 596
Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
L + LS R +S + D + +K + +V V
Sbjct: 597 LSCEPSKERML---LSFRL----LSDSRPKDPGVESSQ-----KKTGAVRIGQLVDVKVL 644
Query: 1377 NVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESP--EKEFPIGKLVAGRVLSVEPLSKRVE 1433
T G + +L A + +LSD P G + RVL + + +
Sbjct: 645 EKTKTGLEVAILPHNTPAFLPTPHLSDHAANGPLLHHWLQTGDTLH-RVLCLSQSERHIL 703
Query: 1434 VTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
+ K + T + +LS + G ++IG +K ++ YG+F+ + L GL + +S
Sbjct: 704 LCRKPALVSTVEGGQDPKSLSEIQPGMLLIGFVKCIKEYGVFVQFP-SGLSGLSPKTIMS 762
Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
+ V + G+ V K+ VD+ K+R+ L ++ S
Sbjct: 763 DKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLS 800
>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1
Length = 1874
Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust.
Identities = 409/1470 (27%), Positives = 678/1470 (46%), Gaps = 169/1470 (11%)
Query: 54 FPRGGGHSLTQRERDEIHA-------EVDAEFEAVERGLHKKNKKKKKKTERKANETVDD 106
FPRGG + E+ + ++ E E+ +R KK +K KT++ ET
Sbjct: 8 FPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKR---KKIQKGPAKTKKLKVETRQ- 63
Query: 107 LGSLFGDGISGKLPRYANKI-TLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAAD 165
S K R +I ++++ GM++ G V EVNE +L I LP GL+G + +
Sbjct: 64 ---------SSKFVREKFEILNVESLCEGMRILGCVKEVNELELAISLPNGLQGYVQVTE 114
Query: 166 ALDPILD--NEIEANEDNL-----LPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRL 218
D + NE A E+ L LP +F G LV C+V LD K K+ + LSL
Sbjct: 115 ICDAYTEKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTKG--SKKNVMLSLNP 172
Query: 219 SLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGID 273
+ + LS ET++ GM+LT V S+EDHGY++ G+ FLP E N G
Sbjct: 173 KNVNRVLSAETLKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAK 232
Query: 274 VKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSIL 333
+K G L ++ + +R VV LS VS + + + +++ L+PG++V +VQ +
Sbjct: 233 LKVGQYLNCLIEEVKGSRGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQKVT 292
Query: 334 ENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393
G+ L FL++F+G VD HL T + N ++V A +L V P +RAV L+L P
Sbjct: 293 PLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSN-----QQVRACVLCVHPRTRAVRLSLRP 347
Query: 394 YLLHNRAPPSHV---KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEV 450
L P + + ++G + D V G + T AY + ++ +
Sbjct: 348 VFLQPGRPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKD---GTLAYARRNHLSNSKK 404
Query: 451 RKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVD 510
+ +K G+ + RI+ + ++ LA L+ S E + D+KPG +VKGKV+ +
Sbjct: 405 TFKPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIK 464
Query: 511 SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL--GVKSKRITVTHKKT 568
G +V+ ++ L P H+++ I P KK+ VG E+ RVL K+K++ +T KKT
Sbjct: 465 PHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKT 524
Query: 569 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSS 628
LV+SKL ++ Y +A L THG+I +++ +GC V+FYN VQG PR EL + +P S
Sbjct: 525 LVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPES 584
Query: 629 MYHVGQVVKCRIMSSIPASRRINLSFMM--KPTRVSEDD------LVKLGSLVSGVVDVV 680
+++ GQVVK +++ P+ R+ LSF + P + E V G L V
Sbjct: 585 VFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEK 644
Query: 681 TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740
T + + V V+ G +PT HL+DH+ + ++ ++ G ++L L +LL
Sbjct: 645 TKDGLKVAVLPHNIP-GFLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERVLLC 703
Query: 741 AKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798
K +L+++ + Q P S IHP ++ G+V NI + G FV+F L+G AP++ D
Sbjct: 704 RKPALVSAVEGGQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKF 763
Query: 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHF---LLEEKIAM 855
S + GQ+V + + +V+ E R+ LSL+ S C+ D + LEE+ +
Sbjct: 764 VTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGV 823
Query: 856 LQSSKHNGSEL-KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFI---THHQLAG 911
+ S L + + G ++ +V E + G V+ F E V G + + + AG
Sbjct: 824 RSLMSNRDSVLIQTLAEMTPGMALDLEVQEVLEDGSVL-FSE-GPVPGLVLRASKYHRAG 881
Query: 912 ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
+E G +A IL+V + V +SL + NR+A+K K+ +
Sbjct: 882 QELEPGQKKKAVILNVDMLKLEVHVSLCHDLV--------NRKAKKLKKGSD-------- 925
Query: 972 QTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPS 1030
+ AIV+ ++E++ V SL E H ++ S N T +F ++ GQ V T+
Sbjct: 926 --LQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLTLQTTEP 983
Query: 1031 SSTAGRLLLLLKAISETETSSSKRAK-------------------KKSSYDVGSLVQAEI 1071
T LLL ++ + T R KK + +G +V +
Sbjct: 984 GVTG--LLLAIEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSIGDVVTGTV 1041
Query: 1072 TEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMK 1131
IKP + + G G IH + + DD V + + K+G+ VTAR+I DMK
Sbjct: 1042 KSIKPTHVVVTLEDGIIGCIHASHILDD-VPVGTSPTAKLKVGKKVTARVIGGR---DMK 1097
Query: 1132 K-SFL-----------WELSIKPSML------TVSEIGSKLLFEECDVSIGQRVTGYV-- 1171
FL ELS++PS L T++ L + GQ VT ++
Sbjct: 1098 TFKFLPISHPRFIRTIPELSVRPSELKEDGHTTLNTHSVSPLEKIKQYQPGQTVTCFLKK 1157
Query: 1172 YKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK--L 1229
Y + +W + I+ ++ ++ +L ++ L+ ++F IG+A+ V+ + K L
Sbjct: 1158 YNMVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQALKATVVGPAESSKAFL 1217
Query: 1230 LRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRV 1289
++ P + + +G++ GR+ K+ + GL V GRV
Sbjct: 1218 CLSLIGPHK------------------LKKGEVAMGRVVKV-TPKEGLTVSFPFGRVGRV 1258
Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
+ + L + Q V+C VL + V + LSLRS S TN S
Sbjct: 1259 SMFHVSDSYSETHLEDFVPQQVVRCYVLSAATPV-----LTLSLRS-----SRTNPETKS 1308
Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS--DGYVES 1407
D + IEDL +++G+VK+V G + L + ++S + +
Sbjct: 1309 KITDP---EINSIEDLEEGQLLRGFVKSVQPSGVLVGLGPSVTGLARHPHVSQHNQSKNA 1365
Query: 1408 P-EKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436
P ++ P GKL+ +VL + VE++L
Sbjct: 1366 PYDRHLPEGKLLTAKVLRLNHQESLVELSL 1395
Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/328 (44%), Positives = 220/328 (67%), Gaps = 6/328 (1%)
Query: 1598 EVNLDDEQPDMDNGISQNQGHTDEA--KTIDEKNNRHAKKKEKEEREQEIRAAEERLLEK 1655
+V LD P + + DE + +K ++ ++ EK++ E+E+ EE L++
Sbjct: 1542 DVGLDTLTPALPPHGDSSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRIEEALMDP 1601
Query: 1656 D-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL 1714
P + ++F+RLV SSP+SS +W++YMAF L ++EKAR++AERAL+TI+ REE EKL
Sbjct: 1602 GRQPESAEDFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL 1661
Query: 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYK 1774
N+WVA NLEN YG+ +E++ KVF+RA+QY +P KV L L +Y ++E+ + A EL +
Sbjct: 1662 NVWVALLNLENMYGS--QESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNR 1719
Query: 1775 MIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833
M+K+F+ VW++ LL++ + E V+QRAL LP+ +H+ I++ A LEF+ G
Sbjct: 1720 MLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGD 1779
Query: 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1893
A+R R++FE LS YPKRTD+WS+Y+D I+ G R +FER I LSL PK+MKF FK
Sbjct: 1780 AERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFFK 1839
Query: 1894 KYLEYEKSVGEEERIEYVKQKAMEYVES 1921
+YL+YEK G E+ ++ VK KA+EYVE+
Sbjct: 1840 RYLDYEKQHGSEKDVQAVKAKALEYVEA 1867
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 91/168 (54%), Gaps = 8/168 (4%)
Query: 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423
D+ P +V+G V + G + + +++ V +L+D +++PEK++ +G V RVL
Sbjct: 449 DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508
Query: 1424 SVEPLSKRVEVTLKTSDSRTASQSEINNLS---NLHVGDIVIGQIKRVESYGLFITIENT 1480
+P +K++ +TLK +T +S++ ++ + G G I RV+ YG + N
Sbjct: 509 LCDPKAKKLMMTLK----KTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYN- 563
Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
++ GL ELS ++V + E+++ G+ VKV +L + K R+ L +
Sbjct: 564 DVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFR 611
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 131/604 (21%), Positives = 234/604 (38%), Gaps = 113/604 (18%)
Query: 909 LAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDL 968
L+ T++ G ++ + + LVD+ + R ++AQ+ R++ L
Sbjct: 179 LSAETLKPGMLLTGTVSSLEDHGYLVDIG-----VSGARAFLPLQKAQEYIRQKNKGAKL 233
Query: 969 GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMAL 1028
V Q +N ++E VK + V++L SIG++ VS A +
Sbjct: 234 KVGQYLNCLIEEVKGSRGVVTL-----SIGHSEVS-------------------AAIATE 269
Query: 1029 PSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFH 1088
S T LL G +V+A++ ++ PL L LKF F
Sbjct: 270 EQSWTLNSLL------------------------PGLVVKAQVQKVTPLGLTLKFLSFFS 305
Query: 1089 GRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVS 1148
G + ++ K+ FSN Q V A ++ ++ LS++P L
Sbjct: 306 GLVDFMHLDPKKAG---TYFSN----QQVRACVLCVH-----PRTRAVRLSLRPVFLQPG 353
Query: 1149 EIGSKLLFEECDVSIGQ-RVTGYVYKVDNEWALL--TISRHLKAQLFILDSAYEPSELQE 1205
++LL ++ + V G+ + L T++ + L ++P
Sbjct: 354 RPLTRLLCQQLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEA--- 410
Query: 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGG 1265
F G ++ ++ +L L LR I + +D I G +V G
Sbjct: 411 ----FKPGNTHKCRIIDYSQMDELALLSLR---TSIIEAQFLWYHD-----IKPGALVKG 458
Query: 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRG 1325
++ I G+VV++G + G V L +I + +P Y G VKC+VL +
Sbjct: 459 KVLTIKPH--GMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKK 516
Query: 1326 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI 1385
++L+ +L V++ + +D P + G++ V GC +
Sbjct: 517 LM---MTLKKTL--------------VESKLPAITCYDDAKPGLQTHGFILRVKDYGCIV 559
Query: 1386 MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK-TSDSRT- 1443
+ V LS YV PE F G++V VL+ EP +R+ ++ + SD +
Sbjct: 560 KFYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQE 619
Query: 1444 ---ASQSEINNLSNLHVGDI-VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
SQ + +S + D+ V+ + K GL + + N+ G + LS DHV N
Sbjct: 620 GEGQSQKKKKAVSAGQLADVKVLEKTKD----GLKVAVLPHNIPGFLPTAHLS-DHVTNG 674
Query: 1500 ETIY 1503
+Y
Sbjct: 675 PLLY 678
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 88/391 (22%), Positives = 164/391 (41%), Gaps = 58/391 (14%)
Query: 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIA 1123
G+LV+ ++ IKP + +K G G + + D +++N + +G V R++
Sbjct: 453 GALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLAD---ILIKNPEKKYHVGDEVKCRVL- 508
Query: 1124 KSNKPDMKKSFLWELSIKPSMLTVSE--IGSKLLFEEC--DVSIGQRVTGYVYKVDNEWA 1179
L + K M+T+ + + SKL C D G + G++ +V +
Sbjct: 509 -----------LCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFILRVKDYGC 557
Query: 1180 LLTISRHLKAQL--FILDSAYEPSELQEFQRRFHIGKAVTGHVLSI--NKEKKLL--RLV 1233
++ ++ + L + Y P + F+ G+ V VL+ +KE+ LL RL+
Sbjct: 558 IVKFYNDVQGLVPRHELSAEYVPDP----ESVFYTGQVVKVVVLNCEPSKERMLLSFRLL 613
Query: 1234 LRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRIS--KILSGV-GGLVVQIGPH-LYGRV 1289
P Q+G Q+ + + G+++ K+L GL V + PH + G +
Sbjct: 614 SDPKQEG-----------EGQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFL 662
Query: 1290 HFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1349
L + + PL L T H L L S + + L
Sbjct: 663 PTAHLSDHVTNGPL-------------LYHWLQTGDTLHRVLCLSVSEERVLLCRKPALV 709
Query: 1350 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE 1409
+ V+ G++ + ++ P M++ G+VKN+ G F+ L + LSD +V S
Sbjct: 710 SAVEG-GQNPKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTS 768
Query: 1410 KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
F G+ V +V +V+ +R+ ++L+ SD
Sbjct: 769 DHFVEGQTVVAKVTNVDEEKQRMLLSLRLSD 799
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 100/436 (22%), Positives = 166/436 (38%), Gaps = 64/436 (14%)
Query: 1111 FKIGQTVTARIIAKSNKPDM----------KKSFLWELSIKPSMLTVSEIGSKLLFEECD 1160
FK G T RII S ++ + FLW IKP L ++
Sbjct: 411 FKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKV---------- 460
Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHV 1220
+ + G V K+ + L + HL A + I + ++++H+G V V
Sbjct: 461 --LTIKPHGMVVKMGKQIRGLVPTMHL-ADILIKNP----------EKKYHVGDEVKCRV 507
Query: 1221 LSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQ 1280
L + + K L + L+ + +D G I+ R+ G +V+
Sbjct: 508 LLCDPKAKKLMMTLKKTLVESKLPAITCYDDAKPGLQTHGFIL--RVKDY-----GCIVK 560
Query: 1281 IGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGM 1340
+ G V EL V DP S + GQ VK VL + LS R D
Sbjct: 561 FYNDVQGLVPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERML---LSFRLLSDPK 617
Query: 1341 SSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFI-MLSRKLDAKVLLSN 1399
G+ +K + +S + V T G + +L + + ++
Sbjct: 618 QEGE-----------GQSQKKKKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFLPTAH 666
Query: 1400 LSDGYVESPEKEFPIGKLVAG----RVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSN 1454
LSD P L G RVL + +RV + K + S + S
Sbjct: 667 LSDHVTNGP---LLYHWLQTGDTLHRVLCLSVSEERVLLCRKPALVSAVEGGQNPKSFSE 723
Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
+H G ++IG +K ++ YG+F+ + L GL + LS+ V + + G+ V K+
Sbjct: 724 IHPGMLLIGFVKNIKDYGVFVQFP-SGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAKVT 782
Query: 1515 KVDKEKRRISLGMKSS 1530
VD+EK+R+ L ++ S
Sbjct: 783 NVDEEKQRMLLSLRLS 798
>sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RRP5 PE=1 SV=1
Length = 1729
Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust.
Identities = 377/1301 (28%), Positives = 624/1301 (47%), Gaps = 178/1301 (13%)
Query: 690 IAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLIN-S 748
I G K ++P H++D + K G + ++ N N+ ++ K SL+N
Sbjct: 530 IFNGQFKASVPPLHISD--TRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIE 587
Query: 749 AQQLP-----SDASHI-HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802
+LP +A +I N + GC + F G L+GF P S+ +
Sbjct: 588 DNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRP 647
Query: 803 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHN 862
+ +GQ+V +LDV+++ RI + C K++ Q+++
Sbjct: 648 EEHLRLGQTVIVKLLDVDADRRRII-----ATC----------------KVSNEQAAQQK 686
Query: 863 GSELKWVEGFIIG-SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVES----- 916
+ +E + G ++I V E V+V + + G I L+ + +E
Sbjct: 687 DT----IENIVPGRTIITVHVIEKTKDSVIVEIPDVG-LRGVIYVGHLSDSRIEQNRAQL 741
Query: 917 -----GSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVH 971
G+ + ++D R+ ++SLK+ I ++A ++ +KD+ +H
Sbjct: 742 KKLRIGTELTGLVIDKDTRTRVFNMSLKSSLI---KDAKKETLPLTYDDVKDLNKDVPMH 798
Query: 972 QTVNAIVE---IVKEN--YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVM 1026
+ +I + V N ++ L LP Y +S K F QSV TV
Sbjct: 799 AYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDIS---------KAFYINQSV--TVY 847
Query: 1027 ALPSSSTAGRLLLLLKA----------ISETETSSSKRAKKKSSYDVGSLVQAEITEIKP 1076
L + + LL LKA S E K +GS+V+A+I +K
Sbjct: 848 LLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKAKIKSVKK 907
Query: 1077 LELRLKFGIGFHGRIHITEVNDDKSNVVE--NLFSNFKIGQTVTARIIA----KSNK--- 1127
+L + HGR+ I EV D + + SN+K + +II KS+K
Sbjct: 908 NQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967
Query: 1128 --PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISR 1185
+ K+ + ELS+KPS L E+ +K L E ++IGQ +TG+V LTIS
Sbjct: 968 ITHKISKASVLELSMKPSELKSKEVHTKSLEE---INIGQELTGFVNNSSGNHLWLTISP 1024
Query: 1186 HLKAQLFILDSAYEPSELQE-FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
LKA++ +LD A S E + F +G A+ V SI++E F + I
Sbjct: 1025 VLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE--------HGFVNAIGKS 1076
Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
VDI NM T I GD + GR+ KI +++ +G + G T+ N
Sbjct: 1077 HVDI---NMST-IKVGDELPGRVLKIAEKY--VLLDLGNKVTGISFITDALNDFSLTLKE 1130
Query: 1305 GYDE--GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1362
+++ + VL + + +ELSLR + S S
Sbjct: 1131 AFEDKINNVIPTTVLSVDEQNK---KIELSLRPATAKTRSIKSH---------------- 1171
Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
EDL IV G VKNV KG F+ LSRK++A V +S LSD Y++ +K + + V G+V
Sbjct: 1172 EDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEWKKFYKPMQYVLGKV 1231
Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEIN-------NLSNLHVGDIVIGQIKRVESYGLFI 1475
++ + S R+ +TL+ +SEIN S++ GD+ G IK V +G+F+
Sbjct: 1232 VTCDEDS-RISLTLR--------ESEINGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFV 1282
Query: 1476 TIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1534
++NT N+ GL H++E+++ +++ ++ G++VK +LK + EK++ISL +K+S+F
Sbjct: 1283 KLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLKASHFSK 1342
Query: 1535 DADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASV 1594
+A +++S + ++++ + ++ ++ D D ES+ G
Sbjct: 1343 EA---ELASTTTTTTTVDQLEKEDEDEVMADA--GFNDSDSESDIGDQ------------ 1385
Query: 1595 PPLEVNLDDEQPDMD-NGISQNQGHTDEAKTIDEKNNRHAKKKEK----EEREQEIRAAE 1649
+ D +P+ +G+S + G A +D+ +++ E ++ + + +
Sbjct: 1386 ---NTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQEDFTENKKHKHKRRK 1442
Query: 1650 ERLLEKD-------APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL 1702
E +++ AP + +FERL+ +PNSS VW+ YMAF L ++++EKAR +AERAL
Sbjct: 1443 ENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAERAL 1502
Query: 1703 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1762
+TIN REE EKLNIW+A NLEN +G EE + +VF RA QY D +H LLG+YE +
Sbjct: 1503 KTINFREEAEKLNIWIAMLNLENTFGT--EETLEEVFSRACQYMDSYTIHTKLLGIYEIS 1560
Query: 1763 EQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQQQEG-VQAVVQRALLSLPRHKHIKF 1820
E+ A EL KKF +W+ L+ +E + ++ AL +LP+ HI+
Sbjct: 1561 EKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEV 1620
Query: 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880
+ + A LEF G +RGRS+FEG++++ PKR DLW++Y+DQE++ D + LFER I+
Sbjct: 1621 VRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIIT 1680
Query: 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921
+ K+ KF F K+L++E+S G+E+ IEYVK KA EYV S
Sbjct: 1681 KKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVAS 1721
Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 322/1386 (23%), Positives = 596/1386 (43%), Gaps = 188/1386 (13%)
Query: 54 FPRGGGHSLTQRERDEIHAEVDAEF----EAVERGLHKKNKKKKKKTERKANETVDDLGS 109
FPRGG +LT E ++ E ++ E+V+ KKKKT +K+ + S
Sbjct: 38 FPRGGASALTPLELKQVANEAASDVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASS 97
Query: 110 LFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRG---------- 159
D L + N TLKN G L G ++ + ++DL I G+ G
Sbjct: 98 ANSDEARAGLIEHVNFKTLKN---GSSLLGQISAITKQDLCITFTDGISGYVNLTHISEE 154
Query: 160 -----------LARAADALD----PILDNEIEANED--------NLLPTI---FHVGQLV 193
+ DA D + D E E+++D N LP + FH+GQ +
Sbjct: 155 FTSILEDLDEDMDSDTDAADEKKSKVEDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWL 214
Query: 194 SCIVLQ---LDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYIL 250
C V++ L+ K+ K++I L++ S + + V+ + A VKSIEDHG L
Sbjct: 215 RCSVIKNTSLEPSTKKSKKKRIELTIEPSSVNIYADEDLVKSTSIQCA-VKSIEDHGATL 273
Query: 251 HFGLPSFTGFLPRNNLAENSGIDVKPGLLLQG-VVRSIDRTRKVVYLSSDPDTVSKCVTK 309
GLP FTGF+ + + + PG + G + + DR+ + +++D S K
Sbjct: 274 DVGLPGFTGFIAKKDFGNFEKL--LPGAVFLGNITKKSDRS---IVVNTD---FSDKKNK 325
Query: 310 DLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQ 369
+ SID ++PG +V +SI +NG+ +G V++ HL+ TF + K+ +
Sbjct: 326 ITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGLVSGVVNVSHLR-TFSEEDLKHKFVI 384
Query: 370 HKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDI 429
+ RI+ L N+ S KV + + +++++ L +
Sbjct: 385 GSSIRCRII---------------ACLENK---SGDKVLILSNLPHILKLEDALRSTEGL 426
Query: 430 PSTPV-------------STPAYVTISD-----VAEEEVRKLEKKYKEGSCVRVRILGFR 471
+ P+ S Y+ + D V V ++E S R+LG+
Sbjct: 427 DAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSS----RVLGYS 482
Query: 472 HLEGLATGILKASAFEGLVFTHSDVKPG-MVVKGKVIAVDSFGAIVQ-FPGGVKALCPLP 529
++ + + +D+ G ++ ++ +V S G ++ F G KA P
Sbjct: 483 PVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVPPL 542
Query: 530 HMSEFEIVKPGKKFKVGAELVFRVLGVKSK-RITVTHKKTLVK---SKLAILSSYAEATD 585
H+S+ +V P +KFK+G+++ RV+ V S+ + VT KK+LV ++L ++S+Y A +
Sbjct: 543 HISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENAKN 602
Query: 586 ----RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641
T I + +GC + F+ G+ GF P SE+ P +GQ V +++
Sbjct: 603 IKEKNEKTLATIQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVKLL 662
Query: 642 SSIPASRRINLSFMMKPTRVSE-----DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSK 696
RRI + + + ++ +++V ++++ V T ++V+V + G +
Sbjct: 663 DVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVHVIEKTKDSVIVEIPDVGL-R 721
Query: 697 GTIPTEHLAD-HLEHATVMKSVIKPGYEFDQLLV-LDNESSNLLLSAKYSLINSAQQ--L 752
G I HL+D +E ++ G E L++ D + +S K SLI A++ L
Sbjct: 722 GVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKETL 781
Query: 753 P---SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVG 809
P D ++ + +H Y+ +I + G FV F G+ G S AVD + D+SK +Y+
Sbjct: 782 PLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYIN 841
Query: 810 QSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWV 869
QSV +L + + + LSLK +E+ + S +K
Sbjct: 842 QSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESN---IEDPV---------DSSIKSW 889
Query: 870 EGFIIGSVIEGKVH--ESNDFGVVVSFEEHS--------DVYGFITHHQLAGATVESGSV 919
+ IGS+++ K+ + N V+++ H D Y IT + + + V
Sbjct: 890 DDLSIGSIVKAKIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDV 949
Query: 920 IQAAIL---DVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNA 976
I+ I+ DV K+ + + ++ K + + + K+ ++ +++ + Q +
Sbjct: 950 IKVKIIGNHDV-KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTG 1008
Query: 977 IVEIVKENYLVLSL-PEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP-SSSTA 1034
V N+L L++ P I ++D N F + N +SV AL ++
Sbjct: 1009 FVNNSSGNHLWLTISPVLKARISLLDLAD-NDSNFSE----NIESVFPLGSALQVKVASI 1063
Query: 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHIT 1094
R + AI ++ + S+ VG + + +I + L G G IT
Sbjct: 1064 DREHGFVNAIGKSHVDIN-----MSTIKVGDELPGRVLKIAEKYVLLDLGNKVTGISFIT 1118
Query: 1095 EVNDDKSNVVENLFSNFKIGQTVTARIIA--KSNKPDMKKSFLWELSIKPSMLTVSEIGS 1152
+ +D S ++ F + KI + +++ + NK ELS++P+ I S
Sbjct: 1119 DALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKK-------IELSLRPATAKTRSIKS 1170
Query: 1153 KLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHI 1212
D+ G+ V G V V+++ + +SR ++A F+ S S L+E+++ +
Sbjct: 1171 -----HEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEA--FVPVSKLSDSYLKEWKKFYKP 1223
Query: 1213 GKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILS 1272
+ V G V++ +++ + + L LR + K + +D I GD+ G I +
Sbjct: 1224 MQYVLGKVVTCDEDSR-ISLTLRESEINGDLKVLKTYSD-----IKAGDVFEGTIKSVTD 1277
Query: 1273 GVGGLVVQIGP--HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVE 1330
G+ V++ ++ G H TE+ + D + + G VK VL+ + + +
Sbjct: 1278 --FGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAIVLKTNPEKK---QIS 1332
Query: 1331 LSLRSS 1336
LSL++S
Sbjct: 1333 LSLKAS 1338
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 9/156 (5%)
Query: 1375 VKNVTSKGCFI-MLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
+ +V+S G + + + + A V ++SD + PE++F IG V GRV+SV V
Sbjct: 518 ITSVSSSGIELKIFNGQFKASVPPLHISDTRLVYPERKFKIGSKVKGRVISVNSRG-NVH 576
Query: 1434 VTLKTS-----DSRTASQSEINNLSNL-HVGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
VTLK S D+ S N N+ + + I+ + G I+ L G
Sbjct: 577 VTLKKSLVNIEDNELPLVSTYENAKNIKEKNEKTLATIQVFKPNGCIISFFG-GLSGFLP 635
Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
SE+SE V E R G+ V VK+L VD ++RRI
Sbjct: 636 NSEISEVFVKRPEEHLRLGQTVIVKLLDVDADRRRI 671
>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3
SV=1
Length = 481
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/403 (24%), Positives = 186/403 (46%), Gaps = 53/403 (13%)
Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
++ + V++IGS F D +I G V G + KVD + LL I +
Sbjct: 5 TVTSPQVAVNDIGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64
Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
A+ + +P+E+ +G V VL+ KE K RL+L + +
Sbjct: 65 ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111
Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
+ ++ + + V G + +++ G GL++ IG + E++ + P G +
Sbjct: 112 AWGTIEALKEKDEAVKGTVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
++ K++E+ + +V LS R+ L+ S S+ + +L
Sbjct: 169 ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNNLQKG 209
Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
I +G V ++ + G F+ L +D V +S LS +++ P + +G V VL V+
Sbjct: 210 TIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268
Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
+RV ++LK + + + + H +G IV G++ ++ +G F+ +E + GL H
Sbjct: 269 RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322
Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
+SEL+E HV+ + + G+ VK++ +D E+RRISL +K +
Sbjct: 323 ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 85/397 (21%), Positives = 164/397 (41%), Gaps = 48/397 (12%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G +V+G ++ VD ++ + + P +S V P + VG E+ VL +
Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95
Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
K R+ ++ K+ + + + E + + G + ++ K G + G++GF P S
Sbjct: 96 KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGTVIEVVKGGLILDI--GLRGFLPAS 151
Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
E+ +P ++G+ ++ +I+ +++ SRR L R + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQ 207
Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
G++ GVV + V + G G + L+ H++H + V++ G E +
Sbjct: 208 KGTIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGDEVTVE 261
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
+L +D + + LS K + + + + H +V G V ++ G FVR +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317
Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
G S+ + + VG ++D++ E RI+LSLKQ+ T E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYT------E 371
Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
F K M S G+ + +W+EGF
Sbjct: 372 EF-DPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGF 407
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 50/364 (13%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS 647
I G I K+++ + +G P EL + +P+ + VG V+ +++
Sbjct: 38 IVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKEDKE 97
Query: 648 RRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704
R+ LS + + + L + V G V V +++ + +G+ ++
Sbjct: 98 GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDIGLRGFLPASL----- 152
Query: 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASHIHPN 762
+E V G E + +++ LD +N++LS + L + ++ S+ +++
Sbjct: 153 ---VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKG 209
Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
++ G V +I+ G FV LG + G S+ S+ VG V +LDV+ +
Sbjct: 210 TIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMD 268
Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
R++LSLK + F + H IG ++ GKV
Sbjct: 269 RERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIVPGKV 301
Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVD 935
+ FG V EE + G + +LA VE G ++D+ R +
Sbjct: 302 TKLVPFGAFVRVEEG--IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRIS 359
Query: 936 LSLK 939
LSLK
Sbjct: 360 LSLK 363
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 34/256 (13%)
Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
ILD + P+ L E +R + +IGK + ++ ++K + + L R + + +
Sbjct: 138 LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSE 197
Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
+N+Q +G I G +S I++ G V +G + G VH +EL + P
Sbjct: 198 VRSEFLNNLQ----KGTIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250
Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
G V +VL++ V LSL+++ + P +H +
Sbjct: 251 VVQVGDEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292
Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
+ IV G V + G F+ + ++ V +S L++ +VE P++ +G +V+
Sbjct: 293 I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350
Query: 1425 VEPLSKRVEVTLKTSD 1440
++ +R+ ++LK ++
Sbjct: 351 IDLERRRISLSLKQAN 366
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-- 556
G +V GKV + FGA V+ G++ L + ++E + P + VG + + +V+ +
Sbjct: 294 GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDL 353
Query: 557 KSKRITVTHKKT-------LVKSKLAILSSYAEATDRLITHG-------WITKIEKH 599
+ +RI+++ K+ +K + SY E + + G W+ EK
Sbjct: 354 ERRRISLSLKQANEDYTEEFDPAKYGMADSYDEQGNYIFPEGFDAETNEWLEGFEKQ 410
>sp|O84100|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=rpsA PE=3 SV=1
Length = 569
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 184/401 (45%), Gaps = 63/401 (15%)
Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
++IG+R G V + + L + + L I D ++ PSE+ E + +
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271
Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
+LS++KEK + L L+ P++D ++ G V G+I K+L
Sbjct: 272 --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316
Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
G ++I + G +H +E+ KNI DP ++G V+ VL I +
Sbjct: 317 PY--GAFIEIEEGIEGLIHVSEMSWVKNIV--DPNEVVNKGDEVEVVVLSIQKD-----E 367
Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
++SL G+ T + P ++E E + V +KN+T+ G F+ L
Sbjct: 368 GKISL-----GLKQTKHN--------PWDNIE--EKYPIGLRVTAEIKNLTNYGAFVELE 412
Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
++ + +S++S V P + F G V +LSV+ SK++ + +K +
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472
Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
E+ VG + G + ++ ++G F+ ++N + GL HVSELSE IE + G+
Sbjct: 473 EVM----FPVGSDISGVVTKITAFGAFVELQN-GIEGLIHVSELSEKPFAKIEDVLSIGD 527
Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESD 1548
KV K++K+D + +++SL +K + + D + EE SD
Sbjct: 528 KVSAKVIKLDPDHKKVSLSIK-EFLVHGGDAGHDAEEESSD 567
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 142/287 (49%), Gaps = 38/287 (13%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
EG IV G+I++ + G GL+V IG + ++ ++KN L Y G+ + K
Sbjct: 133 EGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183
Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
+L+I+ R +V +S R L+ + ++L IE ++ +G V
Sbjct: 184 ILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227
Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
KN+T G F+ L +D + +++++ + P + + + + +LSV+ RV +
Sbjct: 228 KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALG 286
Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
LK + E G V G+I ++ YG FI IE + GL HVSE+S +
Sbjct: 287 LKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341
Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
+ VD E + + G++V+V +L + K++ +ISLG+K + N DN++
Sbjct: 342 NIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTKH-NPWDNIE 386
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)
Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
G V V +L + EG + LK + G+ V ++ + ++GA V+
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412
Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
G++ L + MS + V P + FK G + +L V +SK+IT+ K+ I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472
Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
+ +D G +TKI G FV NG++G SEL P + + +G V
Sbjct: 473 EVMFPVGSD---ISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKV 529
Query: 637 KCRIMSSIPASRRINLSF 654
+++ P ++++LS
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 100/463 (21%), Positives = 194/463 (41%), Gaps = 64/463 (13%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL---V 550
S+V PG ++KG V+ + +V G+K+ +P MSEF + + VGAE+ +
Sbjct: 47 SEVHPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLTVGAEVEVYL 101
Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
+ + K + K T + IL+ E + I G IT+ K G V G++
Sbjct: 102 DQTEDDEGKVVLSREKATRQRQWEYILAHCEEGS---IVKGQITRKVKGGLIVDI--GME 156
Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED--- 664
F P S++ D + +VG+V + +I+ I RR ++ +++ R+S+
Sbjct: 157 AFLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAEL 213
Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
+ + +G G+V +T V ++ G T+ + H + M E
Sbjct: 214 IEQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264
Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
+Q +L +D E + L K N + + P V G + ++ G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAF 321
Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
+ + G S+ + D ++ G V +L + + G+I+L LKQ+ +
Sbjct: 322 IEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNP 381
Query: 838 TDASFMQEHFLLEEKI-AMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
D ++E + + ++ A +++ + G+ ++ G IEG +H S D +
Sbjct: 382 WDN--IEEKYPIGLRVTAEIKNLTNYGAFVELEPG------IEGLIHIS-DMSWIKKVSH 432
Query: 897 HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
S+++ + G+ ++A IL V K + + L +K
Sbjct: 433 PSELF-------------KKGNTVEAVILSVDKESKKITLGVK 462
Score = 35.8 bits (81), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 81/378 (21%), Positives = 136/378 (35%), Gaps = 66/378 (17%)
Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
G V NI + G F+ G + G + + S+ + Q + IL V+ E GR+
Sbjct: 225 GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRV 283
Query: 827 TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
L LKQ +EH E+ E K + G + GK+ +
Sbjct: 284 ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRVRGKIVKLL 316
Query: 887 DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
+G + EE H ++ + V G ++ +L + K E + L LK
Sbjct: 317 PYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLK- 375
Query: 941 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
+ E +G+ T I + V P I +
Sbjct: 376 ------------QTKHNPWDNIEEKYPIGLRVTAE-IKNLTNYGAFVELEPGIEGLIHIS 422
Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSS---TAGRLLLLLKAISETETSSSKRAKK 1057
+S P + F G +V A ++++ S T G L E E
Sbjct: 423 DMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEVM------- 475
Query: 1058 KSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTV 1117
+ VGS + +T+I ++ G G IH++E+++ +E++ S IG V
Sbjct: 476 ---FPVGSDISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLS---IGDKV 529
Query: 1118 TARIIAKSNKPDMKKSFL 1135
+A++I PD KK L
Sbjct: 530 SAKVIKLD--PDHKKVSL 545
>sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN) GN=rpsA
PE=3 SV=2
Length = 481
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 97/403 (24%), Positives = 185/403 (45%), Gaps = 53/403 (13%)
Query: 1139 SIKPSMLTVSEIGSKLLF-EECDVSI-----GQRVTGYVYKVDNEWALLTISRH----LK 1188
++ + V+++GS F D +I G V G + KVD + LL I +
Sbjct: 5 AVPSPQIAVNDVGSSEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIP 64
Query: 1189 AQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDI 1248
A+ + +P+E+ +G V VL+ KE K RL+L + +
Sbjct: 65 ARELSIKHDVDPNEV------VSVGDEVEALVLT--KEDKEGRLILSKKR-----AQYER 111
Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
+ ++ + + V G + +++ G GL++ IG + E++ + P G +
Sbjct: 112 AWGTIEALKEKDEAVKGIVIEVVKG--GLILDIGLRGFLPASLVEMRRVRDLQPYIGKE- 168
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
++ K++E+ + +V LS R+ L+ S S+ + L
Sbjct: 169 ---IEAKIIELDKNRN---NVVLSRRAWLEQTQSEVRSEF-------------LNQLQKG 209
Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPL 1428
I +G V ++ + G F+ L +D V +S LS +++ P + +G V VL V+
Sbjct: 210 AIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMD 268
Query: 1429 SKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCH 1487
+RV ++LK + + + + H +G IV G++ ++ +G F+ +E + GL H
Sbjct: 269 RERVSLSLKAT-----QEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEE-GIEGLVH 322
Query: 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
+SEL+E HV+ + + G+ VK++ +D E+RRISL +K +
Sbjct: 323 ISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA 365
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/379 (21%), Positives = 149/379 (39%), Gaps = 49/379 (12%)
Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
D I G I K+++ + +G P EL + +P+ + VG V+ +++
Sbjct: 34 NDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTK 93
Query: 644 IPASRRINLS---FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIP 700
R+ LS + + + L + V G+V V +++ + +G+ ++
Sbjct: 94 EDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGLILDIGLRGFLPASL- 152
Query: 701 TEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-ASH 758
+E V G E + +++ LD +N++LS + L + ++ S+ +
Sbjct: 153 -------VEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205
Query: 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818
+ ++ G V +I+ G FV LG + G S+ S+ VG V +LD
Sbjct: 206 LQKGAIRKGVVSSIVNFGAFVD-LGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLD 264
Query: 819 VNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI 878
V+ + R++LSLK + F + H IG ++
Sbjct: 265 VDMDRERVSLSLK-ATQEDPWRHFARTH--------------------------AIGQIV 297
Query: 879 EGKVHESNDFGVVVSFEEHSDVYGFIT-----HHQLAGATVESGSVIQAAILDVAKAERL 933
GKV + FG V EE + I+ H ++ V G ++D+ R
Sbjct: 298 PGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRR 357
Query: 934 VDLSLKTV---FIDRFREA 949
+ LSLK +I+ F A
Sbjct: 358 ISLSLKQANEDYIEEFDPA 376
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 83/397 (20%), Positives = 166/397 (41%), Gaps = 48/397 (12%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G +V+G ++ VD ++ + + P +S V P + VG E+ VL +
Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95
Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
K R+ ++ K+ + + + E + + G + ++ K G + G++GF P S
Sbjct: 96 KEGRLILSKKRAQYERAWGTIEALKEKDEAV--KGIVIEVVKGGLILDI--GLRGFLPAS 151
Query: 617 --ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
E+ +P ++G+ ++ +I+ +++ SRR L R + ++
Sbjct: 152 LVEMRRVRDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQ 207
Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
G++ GVV + V + G G + L+ H++H + V++ G E +
Sbjct: 208 KGAIRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDHPS---EVVQVGNEVTVE 261
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNIIETGCFVRFLGRL 785
+L +D + + LS K + + + + H +V G V ++ G FVR +
Sbjct: 262 VLDVDMDRERVSLSLKATQEDPWRHF----ARTHAIGQIVPGKVTKLVPFGAFVRVEEGI 317
Query: 786 TGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQE 845
G S+ + + VG ++D++ E RI+LSLKQ+ + +++E
Sbjct: 318 EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQA-----NEDYIEE 372
Query: 846 HFLLEEKIAMLQSSKHNGSEL----------KWVEGF 872
K M S G+ + +W+EGF
Sbjct: 373 --FDPAKYGMADSYDEQGNYIFPEGFDPDSNEWLEGF 407
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 111/256 (43%), Gaps = 34/256 (13%)
Query: 1192 FILD---SAYEPSELQEFQR----RFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDK 1244
ILD + P+ L E +R + +IGK + ++ ++K + + L R + + +
Sbjct: 138 LILDIGLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLE----Q 193
Query: 1245 TVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLS 1304
T + +G I G +S I++ G V +G + G VH +EL + P
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNF--GAFVDLG-GVDGLVHVSELSWKHIDHPSE 250
Query: 1305 GYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364
G V +VL++ V LSL+++ + P +H +
Sbjct: 251 VVQVGNEVTVEVLDVDMDRE---RVSLSLKATQE---------------DPWRHFARTHA 292
Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
+ IV G V + G F+ + ++ V +S L++ +VE P++ +G +V+
Sbjct: 293 I--GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350
Query: 1425 VEPLSKRVEVTLKTSD 1440
++ +R+ ++LK ++
Sbjct: 351 IDLERRRISLSLKQAN 366
>sp|Q9Z8M3|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1
Length = 580
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 178/390 (45%), Gaps = 62/390 (15%)
Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
+SIG+ G V + + L + + L I D ++ PSE+ E + +
Sbjct: 217 ISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271
Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
+LS++KEK + L L+ P++D ++ G V G+I K+L
Sbjct: 272 --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVLGKIVKLL 316
Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
G ++I + G +H +E+ KNI DP ++G V+ VL I +
Sbjct: 317 PY--GAFIEIEEGIEGLIHISEMSWVKNIV--DPSEVVNKGDEVEAIVLSIQKD-----E 367
Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
++SL G+ T + P ++E E + V +KN+T+ G F+ L
Sbjct: 368 GKISL-----GLKQTERN--------PWDNIE--EKYPIGLHVNAEIKNLTNYGAFVELE 412
Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
++ + +S++S V P + F G V +LSV+ SK++ + +K S ++
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNEI 472
Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
E + G ++ G + ++ ++G F+ ++N + GL HVSELS+ IE I GE
Sbjct: 473 E----AMFPAGTVISGVVTKITAFGAFVELQN-GIEGLIHVSELSDKPFAKIEDIISIGE 527
Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDAD 1537
V K++K+D + +++SL +K N D
Sbjct: 528 NVSAKVIKLDPDHKKVSLSVKEYLADNAYD 557
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 143/288 (49%), Gaps = 38/288 (13%)
Query: 1258 HEGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKC 1314
EG IV G+I++ + G GL+V IG + ++ ++KN L Y G+ +
Sbjct: 132 EEGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEF 182
Query: 1315 KVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGY 1374
K+L+I+ R ++ +S R L+ + ++L IE +S +G
Sbjct: 183 KILKINVERR---NIVVSRRELLEAERISKKAEL-------------IEQISIGEYRKGV 226
Query: 1375 VKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
VKN+T G F+ L +D + +++++ + P + + + + +LSV+ RV +
Sbjct: 227 VKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVAL 285
Query: 1435 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-- 1492
LK + E G V+G+I ++ YG FI IE + GL H+SE+S
Sbjct: 286 GLKQKEHNPWEDIE----KKYPPGKRVLGKIVKLLPYGAFIEIEE-GIEGLIHISEMSWV 340
Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
++ VD E + + G++V+ +L + K++ +ISLG+K + +N DN++
Sbjct: 341 KNIVDPSEVVNK-GDEVEAIVLSIQKDEGKISLGLKQTE-RNPWDNIE 386
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV- 556
G+ V ++ + ++GA V+ G++ L + MS + V P + FK G + +L V
Sbjct: 392 GLHVNAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVD 451
Query: 557 -KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
+SK+IT+ K+ I + + T + G +TKI G FV NG++G
Sbjct: 452 KESKKITLGVKQLSSNPWNEIEAMFPAGT---VISGVVTKITAFGAFVELQNGIEGLIHV 508
Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS 653
SEL P + + +G+ V +++ P ++++LS
Sbjct: 509 SELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLS 546
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 72/350 (20%), Positives = 140/350 (40%), Gaps = 32/350 (9%)
Query: 503 KGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--R 560
KG V + FG + G + L + M+ I P + ++ EL +L V + R
Sbjct: 224 KGVVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGR 282
Query: 561 ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGL 620
+ + K+ I Y L G I K+ +G F+ G++G SE+
Sbjct: 283 VALGLKQKEHNPWEDIEKKYPPGKRVL---GKIVKLLPYGAFIEIEEGIEGLIHISEMSW 339
Query: 621 DPG-CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK----LGSLVSG 675
+PS + + G V+ ++S +I+L +K T + D ++ +G V+
Sbjct: 340 VKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLG--LKQTERNPWDNIEEKYPIGLHVNA 397
Query: 676 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ-------LL 728
+ +T +V + +G I H+ + +K V P F + +L
Sbjct: 398 EIKNLTNYGA--FVELEPGIEGLI-------HISDMSWIKKVSHPSELFKKGNSVEAVIL 448
Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGF 788
+D ES + L K N ++ + +V+ G V I G FV + G
Sbjct: 449 SVDKESKKITLGVKQLSSNPWNEI---EAMFPAGTVISGVVTKITAFGAFVELQNGIEGL 505
Query: 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
S+ D A + +G++V + ++ ++ + +++LS+K+ +
Sbjct: 506 IHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYLADNA 555
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 95/477 (19%), Positives = 192/477 (40%), Gaps = 70/477 (14%)
Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
+ ++++PG ++KG V+ ++ +V G+K+ +P MSEF + + +GAE+
Sbjct: 45 SDNEIQPGAILKGTVVDINKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLVLGAEVEV 99
Query: 552 RVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
+ + + ++ ++ +K + + + ++ E I G IT+ K G V G+
Sbjct: 100 YLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GM 155
Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED--- 664
+ F P S++ D + +VG+V + +I+ R I +S +++ R+S+
Sbjct: 156 EAFLPGSQI--DNKKIKNLDDYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAEL 213
Query: 665 -DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
+ + +G GVV +T V ++ G T+ + H + M E
Sbjct: 214 IEQISIGEYRKGVVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VE 264
Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
+Q +L +D E + L K N + + P V G + ++ G F
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVLGKIVKLLPYGAF 321
Query: 779 VRFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
+ + G S+ + D S+ G V + +L + + G+I+L LKQ+ +
Sbjct: 322 IEIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNP 381
Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE- 896
D +EEK + IG + ++ ++G V E
Sbjct: 382 WDN--------IEEK-------------------YPIGLHVNAEIKNLTNYGAFVELEPG 414
Query: 897 -----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
H +I + G+ ++A IL V K + + L +K + + + E
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNE 471
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 127/585 (21%), Positives = 232/585 (39%), Gaps = 91/585 (15%)
Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723
D+ ++ G+++ G V + + VVV V K S+G IP D E + V
Sbjct: 46 DNEIQPGAILKGTVVDINKDFVVVDVGLK--SEGVIPMSEFIDSSEGLVLGAEV---EVY 100
Query: 724 FDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
DQ ++E ++LS + + +Q +H S+V G + ++ G V
Sbjct: 101 LDQA---EDEEGKVVLSREKA--TRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI-- 153
Query: 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFM 843
+ F P S+ + + +L YVG+ IL +N E I +S ++
Sbjct: 154 GMEAFLPGSQIDNKKIKNLDD--YVGKVCEFKILKINVERRNIVVSRRE----------- 200
Query: 844 QEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------EH 897
L E+I+ +EL +E IG +G V DFGV + +
Sbjct: 201 ---LLEAERIS-------KKAEL--IEQISIGEYRKGVVKNITDFGVFLDLDGIDGLLHI 248
Query: 898 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQK 957
+D+ H VE ++ IL V K + V L LK +E N +K
Sbjct: 249 TDMTWKRIRH--PSEMVELNQELEVIILSVDKEKGRVALGLKQ------KEHNPWEDIEK 300
Query: 958 KKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSI-GYASVSDYNTQKF---PQK 1013
K + + + IV+++ + E I G +S+ + K P +
Sbjct: 301 KYPPGK--------RVLGKIVKLLPYGAFI----EIEEGIEGLIHISEMSWVKNIVDPSE 348
Query: 1014 QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITE 1073
G V A V+++ G++ L LK +TE + ++K Y +G V AEI
Sbjct: 349 VVNKGDEVEAIVLSIQKDE--GKISLGLK---QTERNPWDNIEEK--YPIGLHVNAEIKN 401
Query: 1074 IKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKS 1133
+ ++ G G IHI++++ K V + FK G +V A I++ +
Sbjct: 402 LTNYGAFVELEPGIEGLIHISDMSWIKK--VSHPSELFKKGNSVEAVILSVDKES----- 454
Query: 1134 FLWELSIKPSMLTVSEIGSKLLFE-ECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLF 1192
K L V ++ S E E G ++G V K+ A + + ++ +
Sbjct: 455 -------KKITLGVKQLSSNPWNEIEAMFPAGTVISGVVTKITAFGAFVELQNGIEGLIH 507
Query: 1193 ILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPF 1237
+ + + +P + + IG+ V+ V+ ++ + K + L ++ +
Sbjct: 508 VSELSDKP--FAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEY 550
>sp|O06000|RS1H_BACC1 30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC
10987) GN=BCE_1625 PE=3 SV=1
Length = 382
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 181/398 (45%), Gaps = 53/398 (13%)
Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
++ +G VTG V KV+ + L+ + + D SEL HI KA
Sbjct: 14 ELQVGDVVTGSVTKVEEKQVLVNVG-------YKTDGVIPISELA----NVHIEKA--SD 60
Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISND--NMQTFIHEGDIVGGRISKILSGVGGL 1277
V+ +++ +L + L +S + VD +Q G + + I++G GL
Sbjct: 61 VVELDQILELKIIKLEENDLVLSKRAVDAEKAWIELQEKFTSGHVFDVTVKDIVNG--GL 118
Query: 1278 VVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELS 1332
VV +G P VH+ E + Y +G+ + K++E+ R V LS
Sbjct: 119 VVDLGVRGFIPASLVEVHYVE--------DFTDY-KGKTLAVKIVELDRE---KNRVILS 166
Query: 1333 LRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLD 1392
++ ++ ++ K E I L +V+G V+ +T G F+ + +D
Sbjct: 167 HKAVVE-------------LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG-GVD 212
Query: 1393 AKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNL 1452
V +S +S VE P + G+ V +VLSV+ ++R+ +++K + N
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWE----NIA 268
Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
+ GDI G +KR+ ++G F+ I + GL HVS+++ HV N + G++VKVK
Sbjct: 269 GEVKAGDIREGIVKRLVTFGAFVEI-LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327
Query: 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
+L+V ++RISL +K ++ +N+ E +D A
Sbjct: 328 VLEVHVAEKRISLSIKEAFEENNVTEDYSQYEPNADSA 365
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +K G VV+G V + FGA V GGV L + +S + +P + + G ++ +V
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242
Query: 554 LGVK--SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
L V ++RI+++ K ++ +A D I G + ++ G FV GV+G
Sbjct: 243 LSVDADTQRISLSIKAAQ-PGPWENIAGEVKAGD--IREGIVKRLVTFGAFVEILPGVEG 299
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF--MMKPTRVSED 664
S++ P+ + +GQ VK +++ A +RI+LS + V+ED
Sbjct: 300 LVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEAFEENNVTED 354
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 142/367 (38%), Gaps = 52/367 (14%)
Query: 588 ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SS 643
+ G +TK+E+ V G P SEL + S + + Q+++ +I+ +
Sbjct: 20 VVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQILELKIIKLEEND 79
Query: 644 IPASRRINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703
+ S+R + + + + G + V + +VV + +G+ ++ H
Sbjct: 80 LVLSKR---AVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVVDLGVRGFIPASLVEVH 136
Query: 704 LADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPN 762
+ +K ++ LD E + ++LS K + +A S +
Sbjct: 137 YVEDFTDYKGKTLAVK-------IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEG 189
Query: 763 SVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSE 822
VV G V + + G FV +G + G S+ + S+ GQ V+ +L V+++
Sbjct: 190 DVVEGTVQRLTDFGAFVN-VGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDAD 248
Query: 823 TGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKV 882
T RI+LS+K + E IA E+K G + EG V
Sbjct: 249 TQRISLSIKAAQPGPW------------ENIA---------GEVKA------GDIREGIV 281
Query: 883 HESNDFGVVVSFEEHSDVYGFITHHQLAGATV-------ESGSVIQAAILDVAKAERLVD 935
FG V V G + Q+A V E G ++ +L+V AE+ +
Sbjct: 282 KRLVTFGAFVEI--LPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRIS 339
Query: 936 LSLKTVF 942
LS+K F
Sbjct: 340 LSIKEAF 346
Score = 38.5 bits (88), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 148/355 (41%), Gaps = 29/355 (8%)
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAEL 549
V +++ G VV G V V+ +V + P+ ++ I K ++ L
Sbjct: 9 VMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQIL 68
Query: 550 VFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGV 609
+++ ++ + ++ K V ++ A + + T + + I G V GV
Sbjct: 69 ELKIIKLEENDLVLS--KRAVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVVDL--GV 124
Query: 610 QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVSE 663
+GF P S + + E + Y G+ + +I+ R+ LS + +
Sbjct: 125 RGFIPASLVEVHY-VEDFTDYK-GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182
Query: 664 DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPG 721
+K G +V G V +T V V G G + H++ + H V + V++ G
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNV---GGVDGLV---HIS-QISHERVEQPSEVLEQG 235
Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCF 778
+ ++L +D ++ + LS I +AQ P + A + + G V ++ G F
Sbjct: 236 QKVKVKVLSVDADTQRISLS-----IKAAQPGPWENIAGEVKAGDIREGIVKRLVTFGAF 290
Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
V L + G S+ + + ++ +GQ V+ +L+V+ RI+LS+K++
Sbjct: 291 VEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEA 345
>sp|P38016|RS1_CHLMU 30S ribosomal protein S1 OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=rpsA PE=3 SV=2
Length = 570
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 183/400 (45%), Gaps = 64/400 (16%)
Query: 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAV 1216
++IG+R G V + + L + + L I D ++ PSE+ E + +
Sbjct: 217 ITIGERRKGIVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV---- 271
Query: 1217 TGHVLSINKEKKLLRLVLR-----PFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKIL 1271
+LS++KEK + L L+ P++D ++ G V G+I K+L
Sbjct: 272 --IILSVDKEKGRVALGLKQKEHNPWED-------------IEKKYPPGKRVRGKIVKLL 316
Query: 1272 SGVGGLVVQIGPHLYGRVHFTEL---KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328
G ++I + G +H +E+ KNI DP ++G V+ VL I +
Sbjct: 317 PY--GAFIEIEEGIEGLIHVSEMSWVKNIV--DPNEVVNKGDEVEVVVLSIQKD-----E 367
Query: 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1388
++SL G+ T + P ++E E + V +KN+T+ G F+ L
Sbjct: 368 GKISL-----GLKQTEHN--------PWDNIE--EKYPIGLRVTAEIKNLTNYGAFVELE 412
Query: 1389 RKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQS 1447
++ + +S++S V P + F G V +LSV+ SK++ + +K +
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472
Query: 1448 EINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGE 1507
E + VG + G + ++ ++G F+ ++N + GL HVS+LS+ IE I G+
Sbjct: 473 E----AMFPVGSDISGIVTKITAFGAFVELQN-GIEGLIHVSKLSDKPFAKIEDILSIGD 527
Query: 1508 KVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEES 1547
KV K++K+D + +++SL +K F + +EEE+
Sbjct: 528 KVSAKVIKLDPDHKKVSLSIKE--FLAHGGHAGQDAEEET 565
Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 142/287 (49%), Gaps = 38/287 (13%)
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLY---GRVHFTELKNICVSDPLSGYDEGQFVKCK 1315
EG IV G+I++ + G GL+V IG + ++ ++KN L Y G+ + K
Sbjct: 133 EGSIVKGQITRKVKG--GLIVDIGMEAFLPGSQIDNKKIKN------LDDY-VGKVCEFK 183
Query: 1316 VLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYV 1375
+L+I+ R +V +S R L+ + ++L IE ++ +G V
Sbjct: 184 ILKINVDRR---NVVVSRRELLEAERISKKAEL-------------IEQITIGERRKGIV 227
Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435
KN+T G F+ L +D + +++++ + P + + + + +LSV+ RV +
Sbjct: 228 KNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALG 286
Query: 1436 LKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--E 1493
LK + E G V G+I ++ YG FI IE + GL HVSE+S +
Sbjct: 287 LKQKEHNPWEDIE----KKYPPGKRVRGKIVKLLPYGAFIEIEE-GIEGLIHVSEMSWVK 341
Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQ 1540
+ VD E + + G++V+V +L + K++ +ISLG+K + N DN++
Sbjct: 342 NIVDPNEVVNK-GDEVEVVVLSIQKDEGKISLGLKQTEH-NPWDNIE 386
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 6/198 (3%)
Query: 460 GSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFP 519
G V V +L + EG + LK + G+ V ++ + ++GA V+
Sbjct: 353 GDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELE 412
Query: 520 GGVKALCPLPHMSEFEIVK-PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAI 576
G++ L + MS + V P + FK G + +L V +SK+IT+ K+ I
Sbjct: 413 PGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472
Query: 577 LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVV 636
+ + +D G +TKI G FV NG++G S+L P + + +G V
Sbjct: 473 EAMFPVGSD---ISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILSIGDKV 529
Query: 637 KCRIMSSIPASRRINLSF 654
+++ P ++++LS
Sbjct: 530 SAKVIKLDPDHKKVSLSI 547
Score = 42.7 bits (99), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 96/476 (20%), Positives = 190/476 (39%), Gaps = 72/476 (15%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S+V+PG ++KG V+ + +V G+K+ +P MSEF + + VGAE+ +
Sbjct: 47 SEVQPGAILKGTVVDISKDFVVVDV--GLKSEGVIP-MSEF--IDSSEGLSVGAEVEVYL 101
Query: 554 LGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
+ + ++ ++ +K + + + ++ E I G IT+ K G V G++
Sbjct: 102 DQTEDEEGKVVLSREKATRQRQWEYILAHCEEGS--IVKGQITRKVKGGLIVDI--GMEA 157
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR---INLSFMMKPTRVSED---- 664
F P S++ D + +VG+V + +I+ I RR ++ +++ R+S+
Sbjct: 158 FLPGSQI--DNKKIKNLDDYVGKVCEFKILK-INVDRRNVVVSRRELLEAERISKKAELI 214
Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEF 724
+ + +G G+V +T V ++ G T+ + H + M E
Sbjct: 215 EQITIGERRKGIVKNITDFGV--FLDLDGIDGLLHITDMTWKRIRHPSEM-------VEL 265
Query: 725 DQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
+Q +L +D E + L K N + + P V G + ++ G F+
Sbjct: 266 NQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYP---PGKRVRGKIVKLLPYGAFI 322
Query: 780 RFLGRLTGFAPRSKAVDGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
+ G S+ + D ++ G V +L + + G+I+L LKQ+ +
Sbjct: 323 EIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPW 382
Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE-- 896
D +EEK + IG + ++ ++G V E
Sbjct: 383 DN--------IEEK-------------------YPIGLRVTAEIKNLTNYGAFVELEPGI 415
Query: 897 ----HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
H +I + G+ ++A IL V K + + L +K + + + E
Sbjct: 416 EGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDE 471
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 145/375 (38%), Gaps = 60/375 (16%)
Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRI 826
G V NI + G F+ G + G + + S+ + Q + IL V+ E GR+
Sbjct: 225 GIVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRV 283
Query: 827 TLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886
L LKQ +EH E+ E K + G + GK+ +
Sbjct: 284 ALGLKQ-----------KEHNPWED------------IEKK----YPPGKRVRGKIVKLL 316
Query: 887 DFGVVVSFEE------HSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT 940
+G + EE H ++ + V G ++ +L + K E + L LK
Sbjct: 317 PYGAFIEIEEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQ 376
Query: 941 VFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYA 1000
E N ++K +G+ T I + V P I +
Sbjct: 377 T------EHNPWDNIEEKY-------PIGLRVTAE-IKNLTNYGAFVELEPGIEGLIHIS 422
Query: 1001 SVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSS 1060
+S P + F G +V A ++++ S ++ L +K ++ + + ++
Sbjct: 423 DMSWIKKVSHPSELFKKGNTVEAVILSVDKESK--KITLGVKQLT-----PNPWDEIEAM 475
Query: 1061 YDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120
+ VGS + +T+I ++ G G IH+++++D +E++ S IG V+A+
Sbjct: 476 FPVGSDISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILS---IGDKVSAK 532
Query: 1121 IIAKSNKPDMKKSFL 1135
+I PD KK L
Sbjct: 533 VIKLD--PDHKKVSL 545
>sp|Q49XT0|RS1_STAS1 30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA
PE=3 SV=1
Length = 393
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 131/256 (51%), Gaps = 26/256 (10%)
Query: 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334
GGLVV +G G V + + + D S + EGQ +K KV E+ V LS R
Sbjct: 121 GGLVVDVGQR--GFVPASLISTDFIED-FSDF-EGQVLKLKVEELDPA---NNRVILS-R 172
Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
+++ + + D E +E L+ +++G V +T+ G F+ + +D
Sbjct: 173 KAVEALENAEKKD------------ELLESLNEGDVIEGKVARLTNFGAFVDIG-GVDGL 219
Query: 1395 VLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
V +S LS +V+SPE IG+ V ++ SV+ S+R+ +++K D+ + I
Sbjct: 220 VHVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIK--DTLPSPFESIK--GE 275
Query: 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514
+ GD++ G + R+ ++G F+ I+ + GL H+SE+S H+ + G+ V VK+L
Sbjct: 276 FNEGDVIEGTVVRLANFGAFVEIK-PGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVL 334
Query: 1515 KVDKEKRRISLGMKSS 1530
VD E RISL +K++
Sbjct: 335 GVDVENERISLSIKAT 350
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1422
E L N ++ V V G + + ++ V S +S ++E +F G+++ +V
Sbjct: 103 EQLDNNQTIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIEDF-SDFE-GQVLKLKV 158
Query: 1423 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNL 1482
++P + RV ++ K ++ ++ + L +L+ GD++ G++ R+ ++G F+ I +
Sbjct: 159 EELDPANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGVD- 217
Query: 1483 VGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
GL HVSELS +HV + E + GE V VKI VDK+ RISL +K +
Sbjct: 218 -GLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDT 264
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 22/250 (8%)
Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVR 466
++KV V +G GL++D+ P++ +ST SD E +V KL+ + + + RV
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSDF-EGQVLKLKVEELDPANNRV- 168
Query: 467 ILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALC 526
IL + +E L K E L G V++GKV + +FGA V GGV L
Sbjct: 169 ILSRKAVEALENAEKKDELLESL-------NEGDVIEGKVARLTNFGAFVDI-GGVDGLV 220
Query: 527 PLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEAT 584
+ +S + P +G + ++ V S+RI+++ K TL +I + E
Sbjct: 221 HVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGEFNEGD 280
Query: 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644
+ G + ++ G FV GVQG SE+ PS GQVV +++
Sbjct: 281 ---VIEGTVVRLANFGAFVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVD 337
Query: 645 PASRRINLSF 654
+ RI+LS
Sbjct: 338 VENERISLSI 347
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 156/386 (40%), Gaps = 37/386 (9%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V ++ IV G + P+ +S I P KVG E+
Sbjct: 11 NDIKEGDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L K +L SY ++L +T++ K G V G
Sbjct: 71 VTKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE----- 663
+GF P S + D E S + GQV+K ++ PA+ R+ LS K E
Sbjct: 129 QRGFVPASLISTD-FIEDFSDFE-GQVLKLKVEELDPANNRVILS--RKAVEALENAEKK 184
Query: 664 DDLVKL---GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
D+L++ G ++ G V +T V + G G + L+ EH + V+
Sbjct: 185 DELLESLNEGDVIEGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVKSPEDVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D +S + LS K +L + + + + + V+ G V + G FV
Sbjct: 240 GETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGE---FNEGDVIEGTVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
+ G S+ S+ GQ V +L V+ E RI+LS+K + +
Sbjct: 297 EIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNEN- 355
Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSE 865
++E QS NGS+
Sbjct: 356 --------VIESDSETTQSYLDNGSD 373
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 16/189 (8%)
Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
GD+ + KV R+ G +DI V +S+++ E V+ E G V V+I
Sbjct: 194 GDVI-EGKVARL-TNFGAFVDIGGVD----GLVHVSELSHEHVKSPEDVVSIGETVNVKI 247
Query: 468 LGF-RHLEGLATGILKA--SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKA 524
+ E ++ I S FE + + G V++G V+ + +FGA V+ GV+
Sbjct: 248 KSVDKDSERISLSIKDTLPSPFESI---KGEFNEGDVIEGTVVRLANFGAFVEIKPGVQG 304
Query: 525 LCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSKRITVTHKKTLVKSKLAILSSYAE 582
L + +S I P + + G + +VLG V+++RI+++ K TL ++ S +E
Sbjct: 305 LVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNEN--VIESDSE 362
Query: 583 ATDRLITHG 591
T + +G
Sbjct: 363 TTQSYLDNG 371
>sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rpsA PE=3 SV=1
Length = 392
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 142/283 (50%), Gaps = 28/283 (9%)
Query: 1253 MQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
+Q + +I+ ++++++ G GLVV +G G V + + + D S +D GQ +
Sbjct: 101 LQEKLDNDEIIEAKVTEVVKG--GLVVDVGQR--GFVPASLISTDFIED-FSVFD-GQTI 154
Query: 1313 KCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
+ KV E+ V LS ++ + + L +E L+ +++
Sbjct: 155 RIKVEELDPE---NNRVILSRKAVEQAENDVKKASL-------------LESLNAGDVIK 198
Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432
G V +T+ G F+ + +D V +S LS +V+SPE +G+ V +V SVE ++R+
Sbjct: 199 GKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERI 257
Query: 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1492
+++K D+ I H D++ G++ R+ ++G F+ I + GL H+SE++
Sbjct: 258 SLSIK--DTLPTPFESIK--GQFHEDDVIEGKVVRLANFGAFVEIA-PGVQGLVHISEIA 312
Query: 1493 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1535
+H+ G++V VKIL +D+E RISL +K++ K D
Sbjct: 313 HEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKED 355
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 136/284 (47%), Gaps = 28/284 (9%)
Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDE 1308
N++M I EGD V G + ++ +VV I G G + ++L + +P +
Sbjct: 6 NESMINDIKEGDKVTGEVQQVEDK--QVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQ 63
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
G ++ V +I V + + L+ S ++L+ E L +
Sbjct: 64 GDEIEAYVTKIEVDEENDSGVYILSKRQLETEKSY-------------EYLQ--EKLDND 108
Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAGRVLSVE 1426
I++ V V G + + ++ V S +S ++E +F + G+ + +V ++
Sbjct: 109 EIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRIKVEELD 162
Query: 1427 PLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLC 1486
P + RV ++ K + + + L +L+ GD++ G++ R+ ++G F+ I + GL
Sbjct: 163 PENNRVILSRKAVEQAENDVKKASLLESLNAGDVIKGKVARLTNFGAFVDIGGVD--GLV 220
Query: 1487 HVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
HVSELS +HVD+ E + G++V VK+ V+K+ RISL +K +
Sbjct: 221 HVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDT 264
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 119/261 (45%), Gaps = 26/261 (9%)
Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
++KV V +G GL++D+ P++ +ST S + +R K+E+ E + V
Sbjct: 112 EAKVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168
Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
IL + +E + KAS E L G V+KGKV + +FGA V GGV L
Sbjct: 169 -ILSRKAVEQAENDVKKASLLESL-------NAGDVIKGKVARLTNFGAFVDI-GGVDGL 219
Query: 526 CPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK--SKRITVTHKKTLVKSKLAILSSYAEA 583
+ +S + P VG E+ +V V+ ++RI+++ K TL +I + E
Sbjct: 220 VHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHED 279
Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
+ G + ++ G FV GVQG SE+ + P GQ V +I+
Sbjct: 280 D---VIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGI 336
Query: 644 IPASRRINLSFMMKPTRVSED 664
+ RI+LS +K T ED
Sbjct: 337 DEENERISLS--IKATLPKED 355
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 150/367 (40%), Gaps = 33/367 (8%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V ++ + L K +L SY ++L I +T++ K G V G
Sbjct: 71 VTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K +E+D+ K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQAENDVKK 184
Query: 669 L--------GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T V + G G + L+ EH + V+
Sbjct: 185 ASLLESLNAGDVIKGKVARLTNFGAFVDI---GGVDGLVHVSELSH--EHVDSPEDVVSV 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G E D ++ ++ ++ + LS K +L + + H + V+ G V + G FV
Sbjct: 240 GQEVDVKVKSVEKDAERISLSIKDTLPTPFESI---KGQFHEDDVIEGKVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL-----KQSC 834
+ G S+ + GQ V IL ++ E RI+LS+ K+
Sbjct: 297 EIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIKATLPKEDV 356
Query: 835 CSSTDAS 841
S DA+
Sbjct: 357 VESDDAT 363
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 88/396 (22%), Positives = 162/396 (40%), Gaps = 80/396 (20%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
+ ++EG +T V+ +ED ++H F G +P + L+ EN VK G ++
Sbjct: 10 INDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEA 69
Query: 283 VV------------------RSIDRTRKVVYLSSDPDT---VSKCVTKDLKG-ISIDL-- 318
V R ++ + YL D + VT+ +KG + +D+
Sbjct: 70 YVTKIEVDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDVGQ 129
Query: 319 --LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
VP ++ST + + F G ++ P N R
Sbjct: 130 RGFVPASLISTD---------FIEDFSVFDGQTIRIKVEELDPENN-------------R 167
Query: 377 ILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVST 436
++ + +AV N + + + GD+ + KV R+ G +DI
Sbjct: 168 VIL---SRKAVEQAEND--VKKASLLESLNAGDVI-KGKVARL-TNFGAFVDIGGVD--- 217
Query: 437 PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGF-RHLEGLATGILKA--SAFEGL--VF 491
V +S+++ E V E G V V++ + E ++ I + FE + F
Sbjct: 218 -GLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQF 276
Query: 492 THSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVF 551
DV ++GKV+ + +FGA V+ GV+ L + ++ I PG+K + G ++
Sbjct: 277 HEDDV-----IEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNV 331
Query: 552 RVLGV--KSKRITVTHKKTL-----VKSKLAILSSY 580
++LG+ +++RI+++ K TL V+S A SY
Sbjct: 332 KILGIDEENERISLSIKATLPKEDVVESDDATTQSY 367
Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 117/290 (40%), Gaps = 55/290 (18%)
Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
+K G V+G V V VVV+ I G G IP L+ H H V+K G E +
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKQGDEIEA 69
Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
+ +D E+ S Y L S +QL ++ S+ + + ++ V +++ G
Sbjct: 70 YVTKIEVDEEND----SGVYIL--SKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGL 123
Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
V R GF P S D S + GQ++R + +++ E R+ LS K +
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQAE 179
Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEH 897
D +K ++L+S G VI+GKV +FG V
Sbjct: 180 NDV----------KKASLLES-------------LNAGDVIKGKVARLTNFGAFVDI--- 213
Query: 898 SDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947
V G + +L+ V+S DV + VD+ +K+V D R
Sbjct: 214 GGVDGLVHVSELSHEHVDSPE-------DVVSVGQEVDVKVKSVEKDAER 256
>sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=rpsA PE=3 SV=1
Length = 559
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 183/397 (46%), Gaps = 56/397 (14%)
Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
GQ+V G V + + A + + + L I D A++ PSE+ ++G +
Sbjct: 192 GQQVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRIKHPSEI------VNVGDEIDVK 244
Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
VL ++E+ + L L+ + D V I + EG V R++ + G
Sbjct: 245 VLKFDRERNRVSLGLKQLGE---DPWVAI-----KARYPEGTRVMARVTNLTDY--GCFA 294
Query: 1280 QIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
++ + G VH +E+ KNI S + DE V+ +VL+I R + L ++
Sbjct: 295 ELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDE---VEVQVLDIDEERR---RISLGIKQ 348
Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
S D S+ + + + G +K++T G FI L +D V
Sbjct: 349 C----KSNPWEDFSSQFNKGDR-------------ISGTIKSITDFGIFIGLDGGIDGLV 391
Query: 1396 LLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
LS++S V E + F G + +LSV+P +R+ + +K + S N ++
Sbjct: 392 HLSDISWNEVGEEAVRRFKKGDELETVILSVDPERERISLGIKQLEDDPFS-----NYAS 446
Query: 1455 LH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
LH G IV G +K V++ G I++ ++ G+ SE+S D V++ + + GE+V+ KI
Sbjct: 447 LHEKGSIVRGTVKEVDAKGAVISL-GDDIEGILKASEISRDRVEDARNVLKEGEEVEAKI 505
Query: 1514 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEA 1550
+ +D++ R ISL +KS ++ D ++ ++E + A
Sbjct: 506 ISIDRKSRVISLSVKSKDVDDEKDAMKELRKQEVESA 542
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 89/171 (52%), Gaps = 13/171 (7%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
+E L V+G VKN+T G F+ L +D + +++++ ++ P + +G + +
Sbjct: 186 LESLQEGQQVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRIKHPSEIVNVGDEIDVK 244
Query: 1422 VLSVEPLSKRVEVTLKT--SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
VL + RV + LK D A ++ G V+ ++ + YG F +E
Sbjct: 245 VLKFDRERNRVSLGLKQLGEDPWVAIKARYPE------GTRVMARVTNLTDYGCFAELEE 298
Query: 1480 TNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL HVSE+ + NI + + G++V+V++L +D+E+RRISLG+K
Sbjct: 299 -GVEGLVHVSEMDWTN-KNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIK 347
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 157/364 (43%), Gaps = 39/364 (10%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
D++PG ++ G V+ +D G V G+K+ +P + +F + KVG E+ +
Sbjct: 17 DMQPGAIITGIVVDID--GDWVTVHAGLKSEGVIP-VEQFYNEQGELTIKVGDEVHVALD 73
Query: 555 GVKSK-RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
V+ T ++ +++ I+ A A D ++ K++ G F NG++ F
Sbjct: 74 AVEDGFGETKLSREKAKRAESWIVLEAAFAADEVVKGVINGKVK--GGFTVDVNGIRAFL 131
Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLV 667
P S + + P + + + G+ ++ +++ +++ SRR L R + + +
Sbjct: 132 PGSLVDVRPVRDTTHLE--GKELEFKVIKLDQKRNNVVVSRRSVLEAENSAEREALLESL 189
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD- 725
+ G V G+V +T V + G G + +A ++H + ++ G E D
Sbjct: 190 QEGQQVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRIKHPS---EIVNVGDEIDV 243
Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVR 780
++L D E + + L K QL D + + V V N+ + GCF
Sbjct: 244 KVLKFDRERNRVSLGLK--------QLGEDPWVAIKARYPEGTRVMARVTNLTDYGCFAE 295
Query: 781 FLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
+ G S+ +D ++ SK VG V +LD++ E RI+L +KQ C S+
Sbjct: 296 LEEGVEGLVHVSE-MDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQ-CKSNP 353
Query: 839 DASF 842
F
Sbjct: 354 WEDF 357
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 4/178 (2%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG-KKFKVGAELVFR 552
S G + G + ++ FG + GG+ L L +S E+ + ++FK G EL
Sbjct: 359 SQFNKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETV 418
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDR-LITHGWITKIEKHGCFVRFYNGVQG 611
+L V +R ++ ++ S+YA ++ I G + +++ G + + ++G
Sbjct: 419 ILSVDPERERISLGIKQLEDDP--FSNYASLHEKGSIVRGTVKEVDAKGAVISLGDDIEG 476
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKL 669
SE+ D + ++ G+ V+ +I+S SR I+LS K +D + +L
Sbjct: 477 ILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKEL 534
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 142/368 (38%), Gaps = 61/368 (16%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSG--IDV 274
LE++QEG + VK++ D+G + G G L ++A N G IDV
Sbjct: 186 LESLQEGQQVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 243
Query: 275 KPGLLLQGVVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTR 328
K V DR R V L DP ++I P G V R
Sbjct: 244 K--------VLKFDRERNRVSLGLKQLGEDP------------WVAIKARYPEGTRVMAR 283
Query: 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVG 388
V ++ + G G V + + T + +V ++L +D R +
Sbjct: 284 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRIS 343
Query: 389 LTL-----NPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTIS 443
L + NP+ S GD + D G+ + LD + + ++ +
Sbjct: 344 LGIKQCKSNPW----EDFSSQFNKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWN 399
Query: 444 DVAEEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGLVFTHSDVKPGM 500
+V EE VR ++K+G + IL E ++ GI L+ F H + G
Sbjct: 400 EVGEEAVR----RFKKGDELETVILSVDPERERISLGIKQLEDDPFSNYASLH---EKGS 452
Query: 501 VVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 558
+V+G V VD+ GA++ ++ + +S + K G E+ +++ + KS
Sbjct: 453 IVRGTVKEVDAKGAVISLGDDIEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKS 512
Query: 559 KRITVTHK 566
+ I+++ K
Sbjct: 513 RVISLSVK 520
>sp|Q9ZKF6|RS1_HELPJ 30S ribosomal protein S1 OS=Helicobacter pylori (strain J99) GN=rpsA
PE=3 SV=1
Length = 552
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 149/328 (45%), Gaps = 52/328 (15%)
Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
HIGK + ++ ++KE + + + F + + ++IS + ++
Sbjct: 155 HIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISKELLEA--------------- 199
Query: 1271 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRT 1322
V G+V QI P + G VH++E+ + +P Y EG V K +
Sbjct: 200 TEPVLGVVRQITPFGIFVKFKGIDGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEE 259
Query: 1323 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMIVQGYVKNVTSK 1381
R + LS++++ ++ P E+I+D L P ++ V N+
Sbjct: 260 KR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYAIKVVVSNIEHY 298
Query: 1382 GCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
G F+ + ++ + +S +S D V P +G+ + +++ ++P ++R+ V+LK
Sbjct: 299 GVFVDIGNDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLT 358
Query: 1441 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
+R E S VGDIV G++ + +G F+ + + GL H + D +
Sbjct: 359 NRPFDVFE----SKHQVGDIVEGKVATLTDFGAFLNLGGVD--GLLHNHDAFWDKDKKCK 412
Query: 1501 TIYRAGEKVKVKILKVDKEKRRISLGMK 1528
Y+ G+ +KVKILK++K+ ++ISL K
Sbjct: 413 DHYKIGDVIKVKILKINKKDKKISLSAK 440
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 159/400 (39%), Gaps = 62/400 (15%)
Query: 557 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
K + +V++KK + + K+ A + E + I G I K G V GV+ F R
Sbjct: 86 KGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 144
Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 669
S L + H+G+ +K I+ + IN+S F + R E +L++
Sbjct: 145 SHSSL-----KNDANHIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISKELLEA 199
Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 727
V GVV +TP + V KG H ++ V + K G E + +
Sbjct: 200 TEPVLGVVRQITPFGIFVKF------KGIDGLVHYSEISHKGPVNPEKYYKEGDEVYVKA 253
Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
+ D E L LS K ++ + +++ + P + V NI G FV + G
Sbjct: 254 IAYDEEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEG 310
Query: 788 FAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
F S+ + D + S VGQ + I+D++ + R+ +SLKQ D
Sbjct: 311 FLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFD------- 363
Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
+ SKH +G ++EGKV DFG ++ V G + +
Sbjct: 364 ---------VFESKHQ-----------VGDIVEGKVATLTDFGAFLNL---GGVDGLLHN 400
Query: 907 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLK 939
H + + G VI+ IL + K ++ + LS K
Sbjct: 401 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAK 440
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 91/212 (42%), Gaps = 10/212 (4%)
Query: 454 EKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFG 513
EK YKEG V V+ + + + + +KA+ + +KPG +K V ++ +G
Sbjct: 240 EKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEIQDKLKPGYAIKVVVSNIEHYG 299
Query: 514 AIVQFPGGVKALCPLPHMS-EFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 570
V ++ + +S + + P VG E+ +++ + K++R+ V+ K+ L
Sbjct: 300 VFVDIGNDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQ-LT 358
Query: 571 KSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630
+ S + D I G + + G F+ GV G + D + Y
Sbjct: 359 NRPFDVFESKHQVGD--IVEGKVATLTDFGAFLNL-GGVDGLLHNHDAFWDKDKKCKDHY 415
Query: 631 HVGQVVKCRIMSSIPASRRINLS---FMMKPT 659
+G V+K +I+ ++I+LS + PT
Sbjct: 416 KIGDVIKVKILKINKKDKKISLSAKHLVTSPT 447
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 19/177 (10%)
Query: 1361 KIEDLSPNM---IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1417
KIE+L N I++G + +KG +I+ S+ ++ LS + IGK
Sbjct: 106 KIEELGENYENAIIEGKIVG-KNKGGYIVESQGVEY-----FLSRSHSSLKNDANHIGKR 159
Query: 1418 VAGRVLSVEPLSKRVEVTLK----TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
+ ++ V+ + + ++ K +D R Q EI+ L + V+G ++++ +G+
Sbjct: 160 IKACIIRVDKENHSINISRKRFFEVNDKR---QLEISK-ELLEATEPVLGVVRQITPFGI 215
Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
F+ + + GL H SE+S N E Y+ G++V VK + D+EKRR+SL +K++
Sbjct: 216 FVKFKGID--GLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIKAT 270
>sp|P56008|RS1_HELPY 30S ribosomal protein S1 OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=rpsA PE=3 SV=1
Length = 556
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 149/328 (45%), Gaps = 52/328 (15%)
Query: 1211 HIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKI 1270
HIGK V ++ ++KE + + + F + + +++S + ++
Sbjct: 159 HIGKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA--------------- 203
Query: 1271 LSGVGGLVVQIGPH--------LYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRT 1322
V G+V QI P + G VH++E+ + +P Y EG V K +
Sbjct: 204 TEPVLGVVRQITPFGIFVEAKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAE 263
Query: 1323 VRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED-LSPNMIVQGYVKNVTSK 1381
R + LS++++ ++ P E+I+D L P ++ V N+
Sbjct: 264 KR---RLSLSIKAT---------------IEDP---WEEIQDKLKPGYAIKVVVSNIEHY 302
Query: 1382 GCFIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440
G F+ + ++ + +S +S D V P +G+ + +++ ++P ++R+ V+LK
Sbjct: 303 GVFVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLT 362
Query: 1441 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
+R E S VGD++ G++ + +G F+ + + GL H + D +
Sbjct: 363 NRPFDVFE----SKHQVGDVLEGKVATLTDFGAFLNLGGVD--GLLHNHDAFWDKDKKCK 416
Query: 1501 TIYRAGEKVKVKILKVDKEKRRISLGMK 1528
Y+ G+ +KVKILK++K+ ++ISL K
Sbjct: 417 DHYKIGDVIKVKILKINKKDKKISLSAK 444
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 108/444 (24%), Positives = 179/444 (40%), Gaps = 63/444 (14%)
Query: 557 KSKRITVTHKKTLVKSKL-AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615
K + +V++KK + + K+ A + E + I G I K G V GV+ F R
Sbjct: 90 KGEHPSVSYKKAISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIVE-SQGVEYFLSR 148
Query: 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS----FMMKPTRVSE--DDLVKL 669
S L + H+G+ VK I+ + IN+S F + R E +L++
Sbjct: 149 SHSSL-----KNDANHIGKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSKELLEA 203
Query: 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-KSVIKPGYE-FDQL 727
V GVV +TP + +V AKG +G + H ++ V + K G E + +
Sbjct: 204 TEPVLGVVRQITPFGI--FVEAKGI-EGLV---HYSEISHKGPVNPEKYYKEGDEVYVKA 257
Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
+ D E L LS K ++ + +++ + P + V NI G FV + G
Sbjct: 258 IAYDAEKRRLSLSIKATIEDPWEEI---QDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEG 314
Query: 788 FAPRSKAVDGQRADLSKTYY-VGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
F S+ + Y VGQ + I+D++ + R+ +SLKQ D
Sbjct: 315 FLHVSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFD------- 367
Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
+ SKH +G V+EGKV DFG ++ V G + +
Sbjct: 368 ---------VFESKHQ-----------VGDVLEGKVATLTDFGAFLNL---GGVDGLLHN 404
Query: 907 H-------QLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE-ANSNRQAQKK 958
H + + G VI+ IL + K ++ + LS K + E A ++
Sbjct: 405 HDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSPTEEFAQKHKTDSVI 464
Query: 959 KRKREASKDLGVHQTVNAIVEIVK 982
+ K + KD GV + I ++K
Sbjct: 465 QGKVVSIKDFGVFINADGIDVLIK 488
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 129/298 (43%), Gaps = 38/298 (12%)
Query: 502 VKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG--VKSK 559
V G V + FG V+ G++ L +S V P K +K G E+ + + + +
Sbjct: 207 VLGVVRQITPFGIFVE-AKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKR 265
Query: 560 RITVTHKKTLVKSKLAILSSYAEATDRLITHGW-----ITKIEKHGCFVRFYNGVQGFAP 614
R++++ K T I + E D+L G+ ++ IE +G FV N ++GF
Sbjct: 266 RLSLSIKAT-------IEDPWEEIQDKL-KPGYAIKVVVSNIEHYGVFVDIGNDIEGFLH 317
Query: 615 RSELGLDPGC-EPSSMYHVGQVVKCRIMSSIPASRRINLSFMM---KPTRVSEDDLVKLG 670
SE+ D P++ VGQ + +I+ P +RR+ +S +P V E ++G
Sbjct: 318 VSEISWDKNVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKH-QVG 376
Query: 671 SLVSGVVDVVTP-----NAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD 725
++ G V +T N V + + + DH + V+K
Sbjct: 377 DVLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKV--------- 427
Query: 726 QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783
++L ++ + + LSAK+ + + ++ A +SV+ G V +I + G F+ G
Sbjct: 428 KILKINKKDKKISLSAKHLVTSPTEEF---AQKHKTDSVIQGKVVSIKDFGVFINADG 482
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 19/177 (10%)
Query: 1361 KIEDLSPNM---IVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKL 1417
KIE+L N I++G + +KG +I+ S+ ++ LS + IGK
Sbjct: 110 KIEELGENYENAIIEGKIVG-KNKGGYIVESQGVEY-----FLSRSHSSLKNDANHIGKR 163
Query: 1418 VAGRVLSVEPLSKRVEVTLK----TSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGL 1473
V ++ V+ + + ++ K +D R S+ L + V+G ++++ +G+
Sbjct: 164 VKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK----ELLEATEPVLGVVRQITPFGI 219
Query: 1474 FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
F+ E + GL H SE+S N E Y+ G++V VK + D EKRR+SL +K++
Sbjct: 220 FV--EAKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIKAT 274
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 26/249 (10%)
Query: 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNAR 376
D L PG + V +I GV + G + + + ++ N + ++++ +
Sbjct: 284 DKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVK 343
Query: 377 ILFVDPTSRAVGLTLNPYLLHNR---APPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTP 433
I+ +DP +R + ++L L NR S +VGD+ + D G L L
Sbjct: 344 IIDIDPKNRRLRVSLKQ--LTNRPFDVFESKHQVGDVLEGKVATLTDFGAFLNLG----- 396
Query: 434 VSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE---GLATGILKASAFEGLV 490
+ D ++ +K + YK G ++V+IL + L+ L S E
Sbjct: 397 -GVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSPTEEFA 455
Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKK--FKVGAE 548
H K V++GKV+++ FG + G + + + E + P KK K+G E
Sbjct: 456 QKH---KTDSVIQGKVVSIKDFGVFINADG-------IDVLIKNEDLNPLKKDEIKIGQE 505
Query: 549 LVFRVLGVK 557
+ V+ ++
Sbjct: 506 ITCVVVAIE 514
>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus subtilis (strain 168)
GN=ypfD PE=1 SV=1
Length = 382
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 36/259 (13%)
Query: 1275 GGLVVQIG-----PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHV 1329
GGLVV IG P HF E + Y +G+ + V+E+ R V
Sbjct: 115 GGLVVDIGVRGFIPASLVEAHFVE--------DFTDY-KGKTLSLLVVELDRD---KNRV 162
Query: 1330 ELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1389
LS R+ ++ + +L ++ L ++ G V+ +T G F+ +
Sbjct: 163 ILSHRAVVESEQANKKQEL-------------LQSLEVGSVLDGKVQRLTDFGAFVDIG- 208
Query: 1390 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEI 1449
+D V +S LS +VE P G+ V +VLSV+ ++R+ +++K D+ ++I
Sbjct: 209 GIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIK--DTLPGPWNQI 266
Query: 1450 NNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKV 1509
+ GD++ G ++R+ S+G F+ I + GL H+S++S H+ + G+ V
Sbjct: 267 GE--KVKPGDVLEGTVQRLVSFGAFVEI-LPGVEGLVHISQISNKHIGTPHEVLEEGQTV 323
Query: 1510 KVKILKVDKEKRRISLGMK 1528
KVK+L V++ + RISL M+
Sbjct: 324 KVKVLDVNENEERISLSMR 342
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 1442 RTASQSEINN-----LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496
R +SE N L +L VG ++ G+++R+ +G F+ I + GL H+S+LS HV
Sbjct: 167 RAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGID--GLVHISQLSHSHV 224
Query: 1497 DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
+ + G++VKVK+L VD++ RISL +K +
Sbjct: 225 EKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDT 258
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 6/158 (3%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVK- 557
G V+ GKV + FGA V GG+ L + +S + KP + G E+ +VL V
Sbjct: 188 GSVLDGKVQRLTDFGAFVDI-GGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDR 246
Query: 558 -SKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
++RI+++ K TL + + D L G + ++ G FV GV+G S
Sbjct: 247 DNERISLSIKDTL-PGPWNQIGEKVKPGDVL--EGTVQRLVSFGAFVEILPGVEGLVHIS 303
Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
++ P + GQ VK +++ RI+LS
Sbjct: 304 QISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSM 341
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 144/345 (41%), Gaps = 28/345 (8%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVK--ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
G VVKG V V+ V+ VK + P+ +S + K KV EL +V V
Sbjct: 16 GDVVKGIVTKVEDKHVDVEIIN-VKQSGIIPISELSSLHVEKASDVVKVDDELDLKVTKV 74
Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
+ + ++ + L E + + + + K G V GV+GF P S
Sbjct: 75 EDDALILSKRAVDADRAWEDLEKKFETKE--VFEAEVKDVVKGGLVVDI--GVRGFIPAS 130
Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS---FMMKPTRVSEDDLVK---LG 670
L E + Y G+ + ++ R+ LS + + +L++ +G
Sbjct: 131 -LVEAHFVEDFTDYK-GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVG 188
Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK--SVIKPGYEFD-QL 727
S++ G V +T V + G G + H++ L H+ V K V++ G E ++
Sbjct: 189 SVLDGKVQRLTDFGAFVDI---GGIDGLV---HIS-QLSHSHVEKPSDVVEEGQEVKVKV 241
Query: 728 LVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTG 787
L +D ++ + LS K +L Q+ + P V+ G V ++ G FV L + G
Sbjct: 242 LSVDRDNERISLSIKDTLPGPWNQI---GEKVKPGDVLEGTVQRLVSFGAFVEILPGVEG 298
Query: 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
S+ + + GQ+V+ +LDVN RI+LS+++
Sbjct: 299 LVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRE 343
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 119/280 (42%), Gaps = 45/280 (16%)
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKPGYEFDQ 726
++G +V G+V V V V +I S G IP L+ H+E A+ V+K E D
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQS-GIIPISELSSLHVEKAS---DVVKVDDELD- 68
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786
L V E L+LS + +++ + V V ++++ G V R
Sbjct: 69 LKVTKVEDDALILSKRA--VDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDIGVR-- 124
Query: 787 GFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEH 846
GF P S D T Y G+++ +++++ + R+ LS ++ S A+ QE
Sbjct: 125 GFIPASLVEAHFVEDF--TDYKGKTLSLLVVELDRDKNRVILS-HRAVVESEQANKKQE- 180
Query: 847 FLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITH 906
+LQS + +GSV++GKV DFG +F + + G +
Sbjct: 181 --------LLQSLE-------------VGSVLDGKVQRLTDFG---AFVDIGGIDGLVHI 216
Query: 907 HQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLK 939
QL+ + VE G ++ +L V + + LS+K
Sbjct: 217 SQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIK 256
Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 405 VKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVR 464
++VG + D KV R+ G +DI V IS ++ V K +EG V+
Sbjct: 185 LEVGSVLD-GKVQRL-TDFGAFVDIGGID----GLVHISQLSHSHVEKPSDVVEEGQEVK 238
Query: 465 VRILGF-RHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
V++L R E ++ I K + VKPG V++G V + SFGA V+ GV+
Sbjct: 239 VKVLSVDRDNERISLSI-KDTLPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVE 297
Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567
L + +S I P + + G + +VL V +RI+++ ++
Sbjct: 298 GLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRE 343
>sp|Q7A5J0|RS1_STAAN 30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315)
GN=rpsA PE=1 SV=1
Length = 391
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 94/175 (53%), Gaps = 6/175 (3%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIHGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1482 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDV 356
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 131/285 (45%), Gaps = 30/285 (10%)
Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDE 1308
N++M I EGD V G + ++ +VV I G G + ++L + P E
Sbjct: 6 NESMINDIKEGDKVTGEVQQVEDK--QVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST-DVDTPGKHLEKIEDLSP 1367
G V+ V ++ D + T + LS ++T + E L
Sbjct: 64 GDEVEAYVTKVE----------------FDEENETGAYILSRRQLETEKSYSYLQEKLDN 107
Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAGRVLSV 1425
N I++ V V G + + ++ V S +S ++E +F + G+ + +V +
Sbjct: 108 NEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRIKVEEL 161
Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
+P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I + GL
Sbjct: 162 DPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVD--GL 219
Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 220 VHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIHGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 93/193 (48%), Gaps = 23/193 (11%)
Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
D D + ++EGD++ G+++++ G + IG + G VH +EL + V P
Sbjct: 181 DAKKDQLLQSLNEGDVIHGKVARLTQ--FGAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237
Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
GQ VK K+ I R T + LS++ +L TP ++++
Sbjct: 238 SIGQDVKVKIKSIDRD---TERISLSIKDTL---------------PTPFENIKG--QFH 277
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
N +++G V + + G F+ ++ + V +S ++ ++ +P + G+ V ++L ++
Sbjct: 278 ENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGID 337
Query: 1427 PLSKRVEVTLKTS 1439
++RV +++K +
Sbjct: 338 EENERVSLSIKAT 350
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 23/187 (12%)
Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
GD+ KV R+ + G +DI V +S+++ E V+ E+ G V+V+I
Sbjct: 194 GDVI-HGKVARLTQ-FGAFIDIGGVD----GLVHVSELSHEHVQTPEEVVSIGQDVKVKI 247
Query: 468 LGF-RHLEGLATGILKA--SAFEGL--VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
R E ++ I + FE + F +DV G+VV+ + +FGA V+ GV
Sbjct: 248 KSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVR-----LANFGAFVEIAPGV 302
Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL-----VKSKLA 575
+ L + ++ I PG+ + G ++ ++LG+ +++R++++ K TL V+S +
Sbjct: 303 QGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDVVESDPS 362
Query: 576 ILSSYAE 582
+Y E
Sbjct: 363 TTKAYLE 369
>sp|Q99U14|RS1_STAAM 30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=rpsA PE=1 SV=1
Length = 391
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 94/175 (53%), Gaps = 6/175 (3%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIHGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1482 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDV 356
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 131/285 (45%), Gaps = 30/285 (10%)
Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDE 1308
N++M I EGD V G + ++ +VV I G G + ++L + P E
Sbjct: 6 NESMINDIKEGDKVTGEVQQVEDK--QVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST-DVDTPGKHLEKIEDLSP 1367
G V+ V ++ D + T + LS ++T + E L
Sbjct: 64 GDEVEAYVTKVE----------------FDEENETGAYILSRRQLETEKSYSYLQEKLDN 107
Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAGRVLSV 1425
N I++ V V G + + ++ V S +S ++E +F + G+ + +V +
Sbjct: 108 NEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRIKVEEL 161
Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
+P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I + GL
Sbjct: 162 DPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVD--GL 219
Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 220 VHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIHGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 93/193 (48%), Gaps = 23/193 (11%)
Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
D D + ++EGD++ G+++++ G + IG + G VH +EL + V P
Sbjct: 181 DAKKDQLLQSLNEGDVIHGKVARLTQ--FGAFIDIGG-VDGLVHVSELSHEHVQTPEEVV 237
Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
GQ VK K+ I R T + LS++ +L TP ++++
Sbjct: 238 SIGQDVKVKIKSIDRD---TERISLSIKDTL---------------PTPFENIKG--QFH 277
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
N +++G V + + G F+ ++ + V +S ++ ++ +P + G+ V ++L ++
Sbjct: 278 ENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGID 337
Query: 1427 PLSKRVEVTLKTS 1439
++RV +++K +
Sbjct: 338 EENERVSLSIKAT 350
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 23/187 (12%)
Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
GD+ KV R+ + G +DI V +S+++ E V+ E+ G V+V+I
Sbjct: 194 GDVI-HGKVARLTQ-FGAFIDIGGVD----GLVHVSELSHEHVQTPEEVVSIGQDVKVKI 247
Query: 468 LGF-RHLEGLATGILKA--SAFEGL--VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
R E ++ I + FE + F +DV G+VV+ + +FGA V+ GV
Sbjct: 248 KSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVR-----LANFGAFVEIAPGV 302
Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL-----VKSKLA 575
+ L + ++ I PG+ + G ++ ++LG+ +++R++++ K TL V+S +
Sbjct: 303 QGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDVVESDPS 362
Query: 576 ILSSYAE 582
+Y E
Sbjct: 363 TTKAYLE 369
>sp|Q8NWM8|RS1_STAAW 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2)
GN=rpsA PE=3 SV=1
Length = 391
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 94/175 (53%), Gaps = 6/175 (3%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1482 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDV 356
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 131/285 (45%), Gaps = 30/285 (10%)
Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDE 1308
N++M I EGD V G + ++ +VV I G G + ++L + P E
Sbjct: 6 NESMINDIKEGDKVTGEVQQVEDK--QVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST-DVDTPGKHLEKIEDLSP 1367
G V+ V ++ D + T + LS ++T + E L
Sbjct: 64 GDEVEAYVTKVE----------------FDEENETGAYILSRRQLETEKSYSYLQEKLDN 107
Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAGRVLSV 1425
N I++ V V G + + ++ V S +S ++E +F + G+ + +V +
Sbjct: 108 NEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRIKVEEL 161
Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
+P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I + GL
Sbjct: 162 DPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVD--GL 219
Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 220 VHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 93/193 (48%), Gaps = 23/193 (11%)
Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
D D + ++EGD++ G+++++ G + IG + G VH +EL + V P
Sbjct: 181 DAKKDQLLQSLNEGDVIDGKVARLTQ--FGAFIDIG-GVDGLVHVSELSHEHVQTPEEVV 237
Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
GQ VK K+ I R T + LS++ +L TP ++++
Sbjct: 238 SIGQDVKVKIKSIDRD---TERISLSIKDTL---------------PTPFENIKG--QFH 277
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
N +++G V + + G F+ ++ + V +S ++ ++ +P + G+ V ++L ++
Sbjct: 278 ENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGID 337
Query: 1427 PLSKRVEVTLKTS 1439
++RV +++K +
Sbjct: 338 EENERVSLSIKAT 350
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 23/187 (12%)
Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
GD+ D KV R+ + G +DI V +S+++ E V+ E+ G V+V+I
Sbjct: 194 GDVID-GKVARLTQ-FGAFIDIGGVD----GLVHVSELSHEHVQTPEEVVSIGQDVKVKI 247
Query: 468 LGF-RHLEGLATGILKA--SAFEGL--VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
R E ++ I + FE + F +DV G+VV+ + +FGA V+ GV
Sbjct: 248 KSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVR-----LANFGAFVEIAPGV 302
Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL-----VKSKLA 575
+ L + ++ I PG+ + G ++ ++LG+ +++R++++ K TL V+S +
Sbjct: 303 QGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDVVESDPS 362
Query: 576 ILSSYAE 582
+Y E
Sbjct: 363 TTKAYLE 369
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 114/303 (37%), Gaps = 67/303 (22%)
Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
DA +K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDA----------KKDQLLQSLNE-------------GDVIDGKVARLTQFG-- 208
Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
+F + V G + H Q V G ++ I + + + LS+K
Sbjct: 209 -AFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267
Query: 945 RFR 947
F
Sbjct: 268 PFE 270
>sp|Q6G987|RS1_STAAS 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476)
GN=rpsA PE=3 SV=1
Length = 391
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 94/175 (53%), Gaps = 6/175 (3%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1482 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDV 356
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 131/285 (45%), Gaps = 30/285 (10%)
Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDE 1308
N++M I EGD V G + ++ +VV I G G + ++L + P E
Sbjct: 6 NESMINDIKEGDKVTGEVQQVEDK--QVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST-DVDTPGKHLEKIEDLSP 1367
G V+ V ++ D + T + LS ++T + E L
Sbjct: 64 GDEVEAYVTKVE----------------FDEENETGAYILSRRQLETEKSYSYLQEKLDN 107
Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAGRVLSV 1425
N I++ V V G + + ++ V S +S ++E +F + G+ + +V +
Sbjct: 108 NEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRIKVEEL 161
Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
+P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I + GL
Sbjct: 162 DPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVD--GL 219
Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 220 VHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 93/193 (48%), Gaps = 23/193 (11%)
Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
D D + ++EGD++ G+++++ G + IG + G VH +EL + V P
Sbjct: 181 DAKKDQLLQSLNEGDVIDGKVARLTQ--FGAFIDIG-GVDGLVHVSELSHEHVQTPEEVV 237
Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
GQ VK K+ I R T + LS++ +L TP ++++
Sbjct: 238 SIGQDVKVKIKSIDRD---TERISLSIKDTL---------------PTPFENIKG--QFH 277
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
N +++G V + + G F+ ++ + V +S ++ ++ +P + G+ V ++L ++
Sbjct: 278 ENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGID 337
Query: 1427 PLSKRVEVTLKTS 1439
++RV +++K +
Sbjct: 338 EENERVSLSIKAT 350
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 23/187 (12%)
Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
GD+ D KV R+ + G +DI V +S+++ E V+ E+ G V+V+I
Sbjct: 194 GDVID-GKVARLTQ-FGAFIDIGGVD----GLVHVSELSHEHVQTPEEVVSIGQDVKVKI 247
Query: 468 LGF-RHLEGLATGILKA--SAFEGL--VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
R E ++ I + FE + F +DV G+VV+ + +FGA V+ GV
Sbjct: 248 KSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVR-----LANFGAFVEIAPGV 302
Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL-----VKSKLA 575
+ L + ++ I PG+ + G ++ ++LG+ +++R++++ K TL V+S +
Sbjct: 303 QGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDVVESDPS 362
Query: 576 ILSSYAE 582
+Y E
Sbjct: 363 TTKAYLE 369
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 114/303 (37%), Gaps = 67/303 (22%)
Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
DA +K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDA----------KKDQLLQSLNE-------------GDVIDGKVARLTQFG-- 208
Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
+F + V G + H Q V G ++ I + + + LS+K
Sbjct: 209 -AFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267
Query: 945 RFR 947
F
Sbjct: 268 PFE 270
>sp|Q5HFU7|RS1_STAAC 30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL)
GN=rpsA PE=3 SV=1
Length = 391
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 94/175 (53%), Gaps = 6/175 (3%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
+ S++ ++R+ +++K T N H D++ G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIA-PG 301
Query: 1482 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDV 356
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 131/285 (45%), Gaps = 30/285 (10%)
Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDE 1308
N++M I EGD V G + ++ +VV I G G + ++L + P E
Sbjct: 6 NESMINDIKEGDKVTGEVQQVEDK--QVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST-DVDTPGKHLEKIEDLSP 1367
G V+ V ++ D + T + LS ++T + E L
Sbjct: 64 GDEVEAYVTKVE----------------FDEENETGAYILSRRQLETEKSYSYLQEKLDN 107
Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAGRVLSV 1425
N I++ V V G + + ++ V S +S ++E +F + G+ + +V +
Sbjct: 108 NEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRIKVEEL 161
Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
+P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I + GL
Sbjct: 162 DPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVD--GL 219
Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 220 VHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 28/355 (7%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D ++ + LS K +L + + H N V+ G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDVIEGVVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 93/193 (48%), Gaps = 23/193 (11%)
Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
D D + ++EGD++ G+++++ G + IG + G VH +EL + V P
Sbjct: 181 DAKKDQLLQSLNEGDVIDGKVARLTQ--FGAFIDIG-GVDGLVHVSELSHEHVQTPEEVV 237
Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
GQ VK K+ I R T + LS++ +L TP ++++
Sbjct: 238 SIGQDVKVKIKSIDRD---TERISLSIKDTL---------------PTPFENIKG--QFH 277
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
N +++G V + + G F+ ++ + V +S ++ ++ +P + G+ V ++L ++
Sbjct: 278 ENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGID 337
Query: 1427 PLSKRVEVTLKTS 1439
++RV +++K +
Sbjct: 338 EENERVSLSIKAT 350
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 23/187 (12%)
Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
GD+ D KV R+ + G +DI V +S+++ E V+ E+ G V+V+I
Sbjct: 194 GDVID-GKVARLTQ-FGAFIDIGGVD----GLVHVSELSHEHVQTPEEVVSIGQDVKVKI 247
Query: 468 LGF-RHLEGLATGILKA--SAFEGL--VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
R E ++ I + FE + F +DV G+VV+ + +FGA V+ GV
Sbjct: 248 KSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVR-----LANFGAFVEIAPGV 302
Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL-----VKSKLA 575
+ L + ++ I PG+ + G ++ ++LG+ +++R++++ K TL V+S +
Sbjct: 303 QGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDVVESDPS 362
Query: 576 ILSSYAE 582
+Y E
Sbjct: 363 TTKAYLE 369
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 114/303 (37%), Gaps = 67/303 (22%)
Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
DA +K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDA----------KKDQLLQSLNE-------------GDVIDGKVARLTQFG-- 208
Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
+F + V G + H Q V G ++ I + + + LS+K
Sbjct: 209 -AFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267
Query: 945 RFR 947
F
Sbjct: 268 PFE 270
>sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ispH PE=3 SV=1
Length = 642
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/358 (22%), Positives = 167/358 (46%), Gaps = 50/358 (13%)
Query: 1203 LQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKT-VDISNDNMQTFIHEGD 1261
+ E + + ++G +VTG ++ +++++ L + + +DG+ K+ +D +++ GD
Sbjct: 299 IAENEGKIYVGASVTGEIIQVSEKEVFLNINYK--RDGVIPKSEIDDDGKDLKELFTVGD 356
Query: 1262 IVGGRISKILSGVGGLVVQIGPHLYGRVHFTELK---------NICVSDPLSGYDEGQFV 1312
+ +I K+ +V+ + L + E+K N+ V + + G +
Sbjct: 357 KIVAKIIKLKDADNYVVLSV-KELQREQGYKEIKEAFENKTTLNVVVKEDVKGGIIASYK 415
Query: 1313 KCKVLEISRTVRGTFHV----------------ELSLRSSLDGMSSTNSSDLSTDVDTPG 1356
++ + V FHV E S + + ++ + LS
Sbjct: 416 GIRIFIPASHVE-LFHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLS------- 467
Query: 1357 KHLEKIED-----LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKE 1411
K EK+E+ L +V+G VK +T G F+ + +D + +S +S G VE P
Sbjct: 468 KEKEKVEETVWNKLEEGQVVEGEVKRLTDFGAFVEI-EGVDGLLHVSEISWGRVEKPADV 526
Query: 1412 FPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVES 1470
IG + VLSV+ +K++ +++K +++ NN+ + VG +V+G++ R
Sbjct: 527 LKIGDKIKVYVLSVDKENKKLSLSVKK-----LTENPWNNVEEKYPVGSVVLGKVIRFAD 581
Query: 1471 YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+G F+ +E + GL H+SE+S + GE++K KIL+V E+++I L ++
Sbjct: 582 FGAFVKLE-PGVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSIR 638
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 6/161 (3%)
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
++ G VV+G+V + FGA V+ GV L + +S + KP K+G ++ VL
Sbjct: 481 LEEGQVVEGEVKRLTDFGAFVEIE-GVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLS 539
Query: 556 V--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
V ++K+++++ KK + Y + + G + + G FV+ GV G
Sbjct: 540 VDKENKKLSLSVKKLTENPWNNVEEKYPVGS---VVLGKVIRFADFGAFVKLEPGVDGLV 596
Query: 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
SE+ +PS +VG+ +K +I+ ++I LS
Sbjct: 597 HISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSI 637
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 150/363 (41%), Gaps = 48/363 (13%)
Query: 591 GWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRI 650
G I ++ + F+ G P+SE+ D G + ++ VG + +I+ A +
Sbjct: 314 GEIIQVSEKEVFLNINYKRDGVIPKSEID-DDGKDLKELFTVGDKIVAKIIKLKDADNYV 372
Query: 651 NLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGT---IPTEHLADH 707
LS + + R +K ++VV V +IA KG IP H+
Sbjct: 373 VLS-VKELQREQGYKEIKEAFENKTTLNVVVKEDVKGGIIAS--YKGIRIFIPASHV--E 427
Query: 708 LEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVV 765
L H +K I ++ + + +++++ +L++ ++ + + + VV
Sbjct: 428 LFHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLSKEKEKVEETVWNKLEEGQVV 487
Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
G V + + G FV G + G S+ G+ + +G ++ +L V+ E +
Sbjct: 488 EGEVKRLTDFGAFVEIEG-VDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKK 546
Query: 826 ITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885
++LS+K+ L + N E E + +GSV+ GKV
Sbjct: 547 LSLSVKK-----------------------LTENPWNNVE----EKYPVGSVVLGKVIRF 579
Query: 886 NDFGVVVSFEEHSDVYGF-----ITHHQLAGAT--VESGSVIQAAILDVAKAERLVDLSL 938
DFG V E D G I+H ++A + + G I+A IL+V+ E+ + LS+
Sbjct: 580 ADFGAFVKLEPGVD--GLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSI 637
Query: 939 KTV 941
+ V
Sbjct: 638 REV 640
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 77/376 (20%), Positives = 159/376 (42%), Gaps = 46/376 (12%)
Query: 1063 VGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARII 1122
VG+ V EI ++ E+ L G I +E++DD ++ E LF+ +G + A+II
Sbjct: 308 VGASVTGEIIQVSEKEVFLNINYKRDGVIPKSEIDDDGKDLKE-LFT---VGDKIVAKII 363
Query: 1123 AKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVT-GYVYKVDNEWALL 1181
+ + +L+V E+ + ++E + + T V K D + +
Sbjct: 364 KLKDADNY------------VVLSVKELQREQGYKEIKEAFENKTTLNVVVKEDVKGGI- 410
Query: 1182 TISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241
I+ + ++FI S E + + +IGK+ ++ + +K+ ++V + +
Sbjct: 411 -IASYKGIRIFIPASHVELFHVDNLKE--YIGKSFDVAIIEYSTKKRQTKIVAS--RRAL 465
Query: 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSD 1301
K + + + + EG +V G + + L+ G V G + G +H +E+ V
Sbjct: 466 LSKEKEKVEETVWNKLEEGQVVEGEVKR-LTDFGAFVEIEG--VDGLLHVSEISWGRVEK 522
Query: 1302 PLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEK 1361
P G +K VL + + + +LSL S+ ++ + P ++E
Sbjct: 523 PADVLKIGDKIKVYVLSVDKENK-----KLSL--SVKKLT-----------ENPWNNVE- 563
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
E +V G V G F+ L +D V +S +S + P +G+ + +
Sbjct: 564 -EKYPVGSVVLGKVIRFADFGAFVKLEPGVDGLVHISEISHKRIAKPSDALNVGEEIKAK 622
Query: 1422 VLSVEPLSKRVEVTLK 1437
+L V K++ ++++
Sbjct: 623 ILEVSSEEKKIGLSIR 638
>sp|Q6GGT5|RS1_STAAR 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252)
GN=rpsA PE=3 SV=1
Length = 391
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 93/175 (53%), Gaps = 6/175 (3%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
++ L+ ++ G V +T G FI + +D V +S LS +V++PE+ IG+ V +
Sbjct: 188 LQSLNEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
+ S++ ++R+ +++K T N H D + G + R+ ++G F+ I
Sbjct: 247 IKSIDRDTERISLSIKD----TLPTPFENIKGQFHENDDIEGVVVRLANFGAFVEIA-PG 301
Query: 1482 LVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDA 1536
+ GL H+SE++ H+ + G++V VKIL +D+E R+SL +K++ D
Sbjct: 302 VQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDV 356
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 131/285 (45%), Gaps = 30/285 (10%)
Query: 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQI-GPHLYGRVHFTELKNICVSDPLSGYDE 1308
N++M I EGD V G + ++ +VV I G G + ++L + P E
Sbjct: 6 NESMINDIKEGDKVTGEVQQVEDK--QVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKE 63
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLST-DVDTPGKHLEKIEDLSP 1367
G V+ V ++ D + T + LS ++T + E L
Sbjct: 64 GDEVEAYVTKVE----------------FDEENETGAYILSRRQLETEKSYSYLQEKLDN 107
Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI--GKLVAGRVLSV 1425
N I++ V V G + + ++ V S +S ++E +F + G+ + +V +
Sbjct: 108 NEIIEAKVTEVVKGGLVVDVGQR--GFVPASLISTDFIE----DFSVFDGQTIRIKVEEL 161
Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
+P + RV ++ K + + L +L+ GD++ G++ R+ +G FI I + GL
Sbjct: 162 DPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVD--GL 219
Query: 1486 CHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
HVSELS +HV E + G+ VKVKI +D++ RISL +K +
Sbjct: 220 VHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDT 264
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 28/355 (7%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + K G E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V V+ T L + +L SY+ ++L I +T++ K G V G
Sbjct: 71 VTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVK 668
+GF P S + D E S++ GQ ++ ++ P + R+ LS K E+D K
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILS--RKAVEQEENDAKK 184
Query: 669 --------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKP 720
G ++ G V +T + + G G + L+ EH + V+
Sbjct: 185 DQLLQSLNEGDVIDGKVARLTQFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSI 239
Query: 721 GYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV 779
G + ++ +D ++ + LS K +L + + H N + G V + G FV
Sbjct: 240 GQDVKVKIKSIDRDTERISLSIKDTLPTPFENI---KGQFHENDDIEGVVVRLANFGAFV 296
Query: 780 RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
+ G S+ + GQ V IL ++ E R++LS+K +
Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATL 351
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 92/193 (47%), Gaps = 23/193 (11%)
Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGY 1306
D D + ++EGD++ G+++++ G + IG + G VH +EL + V P
Sbjct: 181 DAKKDQLLQSLNEGDVIDGKVARLTQ--FGAFIDIG-GVDGLVHVSELSHEHVQTPEEVV 237
Query: 1307 DEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1366
GQ VK K+ I R T + LS++ +L TP ++++
Sbjct: 238 SIGQDVKVKIKSIDRD---TERISLSIKDTL---------------PTPFENIKG--QFH 277
Query: 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVE 1426
N ++G V + + G F+ ++ + V +S ++ ++ +P + G+ V ++L ++
Sbjct: 278 ENDDIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGID 337
Query: 1427 PLSKRVEVTLKTS 1439
++RV +++K +
Sbjct: 338 EENERVSLSIKAT 350
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 112/303 (36%), Gaps = 67/303 (22%)
Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG----- 721
+K G V+G V V VVV+ I G G IP L+ H H V+K G
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIDSPSEVVKEGDEVEA 69
Query: 722 ----YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCN 771
EFD+ +NE+ +LS + QL ++ S+ + N ++ V
Sbjct: 70 YVTKVEFDE----ENETGAYILSRR--------QLETEKSYSYLQEKLDNNEIIEAKVTE 117
Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+++ G V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 118 VVKGGLVVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRK 173
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
DA +K +LQS G VI+GKV FG
Sbjct: 174 AVEQEENDA----------KKDQLLQSLNE-------------GDVIDGKVARLTQFGAF 210
Query: 892 VSFEEHSDVYGFI-------THHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFID 944
+ V G + H Q V G ++ I + + + LS+K
Sbjct: 211 IDI---GGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPT 267
Query: 945 RFR 947
F
Sbjct: 268 PFE 270
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 93/188 (49%), Gaps = 23/188 (12%)
Query: 408 GDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRI 467
GD+ D KV R+ + G +DI V +S+++ E V+ E+ G V+V+I
Sbjct: 194 GDVID-GKVARLTQ-FGAFIDIGGVD----GLVHVSELSHEHVQTPEEVVSIGQDVKVKI 247
Query: 468 LGF-RHLEGLATGILKA--SAFEGL--VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGV 522
R E ++ I + FE + F +D G+VV+ + +FGA V+ GV
Sbjct: 248 KSIDRDTERISLSIKDTLPTPFENIKGQFHENDDIEGVVVR-----LANFGAFVEIAPGV 302
Query: 523 KALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTL-----VKSKLA 575
+ L + ++ I PG+ + G ++ ++LG+ +++R++++ K TL V+S +
Sbjct: 303 QGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDVVESDPS 362
Query: 576 ILSSYAEA 583
+Y E+
Sbjct: 363 TTKAYLES 370
>sp|Q83E09|RS1_COXBU 30S ribosomal protein S1 OS=Coxiella burnetii (strain RSA 493 / Nine
Mile phase I) GN=rpsA PE=1 SV=1
Length = 551
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 96/180 (53%), Gaps = 9/180 (5%)
Query: 1351 DVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEK 1410
+ +T + ++E+L ++G +KN+T G F+ L +D + +++++ G V+ P
Sbjct: 171 EAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLG-GVDGLLHITDMAWGRVKHPSD 229
Query: 1411 EFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVES 1470
+G V +VL + KRV + +K ++ E V V G++ +
Sbjct: 230 LLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIE----RRYPVNSRVFGKVTNITD 285
Query: 1471 YGLFITIENTNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1528
YG F+ +E + GL H SEL + NI + ++GE+V+V +L++D+E+RRISLG+K
Sbjct: 286 YGCFVKLEE-GVEGLVHTSELDWTN-KNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIK 343
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1462
GY+E E +F I K+ R V +S+R + +TS R A L L G +
Sbjct: 141 GYLEDKEIDFKIIKMDQRRNNVV--VSRRAVMEAETSAERQA------RLEELQEGQEIK 192
Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
G IK + YG F+ + + GL H+++++ V + + G++V VK+LK D++K+R
Sbjct: 193 GVIKNITDYGAFVDLGGVD--GLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKR 250
Query: 1523 ISLGMK 1528
+SLGMK
Sbjct: 251 VSLGMK 256
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 114/485 (23%), Positives = 194/485 (40%), Gaps = 85/485 (17%)
Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
T +D++PG +VK V+ V IV G+K+ +P SEF +P VG E
Sbjct: 13 LTETDLRPGALVKATVVEVRPDRVIVN--AGLKSEGIIP-ASEFRNEEP----HVGDEF- 64
Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK---IEK-HGCFVRFY 606
F V+ T L + K +++E ++ G + K IE+ G F
Sbjct: 65 FVVIEASDNGFGETR---LSREKARRAKAWSE-LEKAYKAGEMVKGVIIERVKGGFTVDL 120
Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTR 660
N V+ F P S + + P +P Y + + +I+ +++ SRR + R
Sbjct: 121 NSVRAFLPGSLVDVKPVRDPG--YLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAER 178
Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIK 719
+ + ++ G + GV+ +T V + G G + +A ++H + + +V
Sbjct: 179 QARLEELQEGQEIKGVIKNITDYGAFVDL---GGVDGLLHITDMAWGRVKHPSDLLNV-- 233
Query: 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHP-NSVVHGYVCNII 773
G E ++L D + + L K QL D +P NS V G V NI
Sbjct: 234 -GDEVHVKVLKFDRDKKRVSLGMK--------QLADDPWAKIERRYPVNSRVFGKVTNIT 284
Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLK 831
+ GCFV+ + G S+ +D ++ SK G+ V +L+++ E RI+L +K
Sbjct: 285 DYGCFVKLEEGVEGLVHTSE-LDWTNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIK 343
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
Q C + F ++H E+ I GKV DFG+
Sbjct: 344 Q-CKRNPWQEFAEKHEKDEK--------------------------ITGKVRSITDFGMF 376
Query: 892 VSFEEHSDVYGFITHHQLAGA--------TVESGSVIQAAILDVAKAERLVDLSLKTVFI 943
+ E D+ G + ++ + G +QA IL + + L +K +
Sbjct: 377 IGLE--GDIDGLVHLSDISWTESGEEAIRNYKKGDEVQAVILGIDPERERISLGIKQLEG 434
Query: 944 DRFRE 948
D F E
Sbjct: 435 DPFME 439
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 161/378 (42%), Gaps = 60/378 (15%)
Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAY----EPSELQEFQRRFHIGKAVTGH 1219
GQ + G + + + A + + + L I D A+ PS+L ++G V
Sbjct: 188 GQEIKGVIKNITDYGAFVDLG-GVDGLLHITDMAWGRVKHPSDL------LNVGDEVHVK 240
Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
VL +++KK + L ++ D K N + F G+++ I G V
Sbjct: 241 VLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVF--------GKVTNITDY--GCFV 290
Query: 1280 QIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFVKCKVLEISRTVRG-TFHVELSLR 1334
++ + G VH +EL KNI P G+ V+ VLEI R + ++ R
Sbjct: 291 KLEEGVEGLVHTSELDWTNKNIH---PSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKR 347
Query: 1335 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAK 1394
+ + + D EKI G V+++T G FI L +D
Sbjct: 348 NPWQEFAEKHEKD------------EKI---------TGKVRSITDFGMFIGLEGDIDGL 386
Query: 1395 VLLSNLSDGYVESPE---KEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINN 1451
V LS++S + ES E + + G V +L ++P +R+ + +K + +
Sbjct: 387 VHLSDIS--WTESGEEAIRNYKKGDEVQAVILGIDPERERISLGIK----QLEGDPFMEF 440
Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
+ + ++ ++K VES + + + ++G +++ + D V ++ G++V V
Sbjct: 441 VESYDKDAVIQAKVKEVESKQAVLELAD-QVLGQMRLADYTYDRVKDLTQELNVGDEVAV 499
Query: 1512 KILKVDKEKRRISLGMKS 1529
KI+ VD++ R I++ K+
Sbjct: 500 KIVNVDRKNRLINVSHKA 517
>sp|Q5HP69|RS1_STAEQ 30S ribosomal protein S1 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=rpsA PE=3 SV=1
Length = 392
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 183/397 (46%), Gaps = 41/397 (10%)
Query: 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219
D+ G +VTG V +V+++ ++ I+ K I S ++ +G V +
Sbjct: 12 DIKEGDKVTGEVQQVEDKQVVVHINGG-KFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70
Query: 1220 VLSI--NKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGL 1277
V I ++E +L Q + S + +Q + +++ +++++ G GL
Sbjct: 71 VTKIEFDEENDTGAYILSKRQ-----LETEKSYEYLQEKLDNDEVIEAEVTEVVKG--GL 123
Query: 1278 VVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1337
VV +G G V + + + D S +D GQ ++ KV E+
Sbjct: 124 VVDVGQR--GFVPASLISTDFIED-FSVFD-GQTIRIKVEELDPENNRVI---------- 169
Query: 1338 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLL 1397
+S L D K ++ L+ ++ G V +T+ G FI + +D V +
Sbjct: 170 --LSRKAVEQLEND----AKKASILDSLNEGDVIDGKVARLTNFGAFIDIG-GVDGLVHV 222
Query: 1398 SNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHV 1457
S LS +V++PE+ +G+ V +V SVE S+R+ +++K T N H
Sbjct: 223 SELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKD----TLPTPFENIKGKFHE 278
Query: 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVD 1517
D++ G + R+ ++G F+ I ++ GL H+SE+ H+ + + G++V VKIL +D
Sbjct: 279 DDVIEGTVVRLANFGAFVEIA-PSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGID 337
Query: 1518 KEKRRISLGMKSSYFK-----NDADNLQMSSEEESDE 1549
++ RISL +K++ K +DA Q E+++DE
Sbjct: 338 EDNERISLSIKATLPKENVIESDASTTQSYLEDDNDE 374
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 149/370 (40%), Gaps = 28/370 (7%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFR 552
+D+K G V G+V V+ +V GG + P+ +S I P + KVG E+
Sbjct: 11 NDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAY 70
Query: 553 VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRL----ITHGWITKIEKHGCFVRFYNG 608
V ++ T L K +L SY ++L + +T++ K G V G
Sbjct: 71 VTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGLVVDV--G 128
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLS------FMMKPTRVS 662
+GF P S + D E S++ GQ ++ ++ P + R+ LS + S
Sbjct: 129 QRGFVPASLISTD-FIEDFSVFD-GQTIRIKVEELDPENNRVILSRKAVEQLENDAKKAS 186
Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPG- 721
D + G ++ G V +T + + G G + L+ EH + V+ G
Sbjct: 187 ILDSLNEGDVIDGKVARLTNFGAFIDI---GGVDGLVHVSELSH--EHVQTPEEVVSVGE 241
Query: 722 YEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781
++ ++ +S + LS K +L + + H + V+ G V + G FV
Sbjct: 242 AVKVKVKSVEKDSERISLSIKDTLPTPFENI---KGKFHEDDVIEGTVVRLANFGAFVEI 298
Query: 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC----CSS 837
+ G S+ ++ GQ V IL ++ + RI+LS+K +
Sbjct: 299 APSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENVIE 358
Query: 838 TDASFMQEHF 847
+DAS Q +
Sbjct: 359 SDASTTQSYL 368
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 24/251 (9%)
Query: 413 QSKVVRVDRGLGLLLDI------PSTPVSTPAYVTISDVAEEEVR-KLEKKYKEGSCVRV 465
+++V V +G GL++D+ P++ +ST S + +R K+E+ E + V
Sbjct: 112 EAEVTEVVKG-GLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRV-- 168
Query: 466 RILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKAL 525
IL + +E L KAS + L G V+ GKV + +FGA + GGV L
Sbjct: 169 -ILSRKAVEQLENDAKKASILDSL-------NEGDVIDGKVARLTNFGAFIDI-GGVDGL 219
Query: 526 CPLPHMSEFEIVKPGKKFKVG--AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEA 583
+ +S + P + VG ++ + + S+RI+++ K TL I + E
Sbjct: 220 VHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHED 279
Query: 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643
+ G + ++ G FV VQG SE+ P+ + GQ V +I+
Sbjct: 280 D---VIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGI 336
Query: 644 IPASRRINLSF 654
+ RI+LS
Sbjct: 337 DEDNERISLSI 347
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 94/237 (39%), Gaps = 45/237 (18%)
Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQ 726
+K G V+G V V VVV+ I G G IP L+ H H V+K G E +
Sbjct: 13 IKEGDKVTGEVQQVEDKQVVVH-INGGKFNGIIPISQLSTH--HIENPSEVVKVGDEVEA 69
Query: 727 LLV---LDNESSNLLLSAKYSLINSAQQLPSDASH------IHPNSVVHGYVCNIIETGC 777
+ D E+ + Y L S +QL ++ S+ + + V+ V +++ G
Sbjct: 70 YVTKIEFDEEND----TGAYIL--SKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGL 123
Query: 778 FVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837
V R GF P S D S + GQ++R + +++ E R+ LS K
Sbjct: 124 VVDVGQR--GFVPASLISTDFIEDFS--VFDGQTIRIKVEELDPENNRVILSRKAVEQLE 179
Query: 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
DA +K ++L S G VI+GKV +FG +
Sbjct: 180 NDA----------KKASILDSLNE-------------GDVIDGKVARLTNFGAFIDI 213
>sp|P50889|RS1_LEULA 30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2
Length = 429
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 6/165 (3%)
Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
LS +V+G V +T G F+ L +D V +S +S V++P G V ++L+
Sbjct: 228 LSVGEVVEGTVARLTDFGAFVDLG-GVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILA 286
Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1484
++ R+ +++K + ++ + G ++ G +KRV+ +G F+ I + G
Sbjct: 287 LDTEKGRISLSIKATQRGPWDEAA----DQIAAGSVLEGTVKRVKDFGAFVEIL-PGIEG 341
Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
L HVS++S ++N + ++G+KV+VK+L + + RISL MK+
Sbjct: 342 LVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKA 386
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1475
K + +V+ ++P + R+ ++ K ++ + S L VG++V G + R+ +G F+
Sbjct: 189 KDIKAQVIEIDPANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFV 248
Query: 1476 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
+ + GL HVSE+S D V N + G+KV VKIL +D EK RISL +K++
Sbjct: 249 DLGGVD--GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKAT 301
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 118/266 (44%), Gaps = 29/266 (10%)
Query: 408 GDIYDQSKVVRVDRGLGLLLDIPST----PVSTPAYVTISDVAEEEVRKLEKKYKEGSCV 463
GD D +KV+ RG GL++D+ P S A +SD+ + + + ++ + E
Sbjct: 144 GDTVD-AKVINAVRG-GLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPA 201
Query: 464 RVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVK 523
R++ R A + +A VF+ V G VV+G V + FGA V GGV
Sbjct: 202 NARLILSRK----AVAAQELAAQLAEVFSKLSV--GEVVEGTVARLTDFGAFVDL-GGVD 254
Query: 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSK--RITVTHKKTLVKSKLAILSSYA 581
L + +S + P G ++ ++L + ++ RI+++ K T +
Sbjct: 255 GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQ-------RGPWD 307
Query: 582 EATDRL----ITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637
EA D++ + G + +++ G FV G++G S++ PS + G V+
Sbjct: 308 EAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQ 367
Query: 638 CRIMSSIPASRRINLSFMM---KPTR 660
+++ PA RI+LS KP R
Sbjct: 368 VKVLDIKPAEERISLSMKALEEKPER 393
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 135/355 (38%), Gaps = 52/355 (14%)
Query: 601 CFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTR 660
V G +G P E D + +G ++ ++S++ + + +++++ R
Sbjct: 71 AVVGLSTGEEGVVPAREYSDDRNINLADELKIGDTIEAVVISNVTSDKE-GVAYLLSKKR 129
Query: 661 VSEDDLVKLGSLVSG-VVDVVTPNAVVVYVIA-----KGYSKGTIPTEHLADHLEHATVM 714
+ + S G VD NAV +I +G+ ++ E L
Sbjct: 130 LDARKAWENLSFAEGDTVDAKVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQ--FK 187
Query: 715 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNII 773
IK Q++ +D ++ L+LS K ++ S + VV G V +
Sbjct: 188 NKDIKA-----QVIEIDPANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLT 242
Query: 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
+ G FV LG + G S+ + + + G V IL +++E GRI+LS+K +
Sbjct: 243 DFGAFVD-LGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKAT 301
Query: 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVS 893
D + Q GSV+EG V DFG V
Sbjct: 302 QRGPWDEAADQ---------------------------IAAGSVLEGTVKRVKDFGAFV- 333
Query: 894 FEEHSDVYGFITHHQLAGATVE-------SGSVIQAAILDVAKAERLVDLSLKTV 941
E + G + Q++ +E SG +Q +LD+ AE + LS+K +
Sbjct: 334 -EILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKAL 387
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 149/351 (42%), Gaps = 32/351 (9%)
Query: 496 VKPGMVVKGKVIAVDSFG-AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVG----AELV 550
+K G VV G+++A+D+ A+V G + + P S+ + + K+G A ++
Sbjct: 52 IKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDRNINLADELKIGDTIEAVVI 111
Query: 551 FRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQ 610
V K + KK L K S+AE + I + G + NGV+
Sbjct: 112 SNVTSDKEGVAYLLSKKRLDARKAWENLSFAEGD--TVDAKVINAV--RGGLIVDVNGVR 167
Query: 611 GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL---- 666
GF P S + + + + + +K +++ PA+ R+ LS + L
Sbjct: 168 GFVPASMVAERFVSDLNQFKN--KDIKAQVIEIDPANARLILSRKAVAAQELAAQLAEVF 225
Query: 667 --VKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
+ +G +V G V +T V + G G + ++ D +++ V+ G +
Sbjct: 226 SKLSVGEVVEGTVARLTDFGAFVDL---GGVDGLVHVSEISHDRVKNPA---DVLTKGDK 279
Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD--ASHIHPNSVVHGYVCNIIETGCFVR 780
D ++L LD E + LS I + Q+ P D A I SV+ G V + + G FV
Sbjct: 280 VDVKILALDTEKGRISLS-----IKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVE 334
Query: 781 FLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
L + G S+ + + + S+ G V+ +LD+ RI+LS+K
Sbjct: 335 ILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMK 385
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 92/422 (21%), Positives = 182/422 (43%), Gaps = 56/422 (13%)
Query: 1047 TETSSSKRAKKKSSYD---VGSLVQAEITEI-KPLELRLKFGIGFHGRIHITEVNDDKSN 1102
+ET++ A +S+ D VG +V E+ I + + G G + E +DD+ N
Sbjct: 35 SETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDR-N 93
Query: 1103 VVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVS 1162
+ NL KIG T+ A +I SN K+ + LS K L + L F E D
Sbjct: 94 I--NLADELKIGDTIEAVVI--SNVTSDKEGVAYLLSKK--RLDARKAWENLSFAEGDTV 147
Query: 1163 IGQRVT----GYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218
+ + G + V+ + S + A+ F+ S+L +F+ K +
Sbjct: 148 DAKVINAVRGGLIVDVNGVRGFVPAS--MVAERFV-------SDLNQFKN-----KDIKA 193
Query: 1219 HVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLV 1278
V+ I+ RL+L + ++ + + + + + G++V G ++++ G
Sbjct: 194 QVIEIDPANA--RLILS--RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDF--GAF 247
Query: 1279 VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338
V +G + G VH +E+ + V +P +G V K+L + T +G + LS++++
Sbjct: 248 VDLG-GVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALD-TEKG--RISLSIKAT-- 301
Query: 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398
G E + ++ +++G VK V G F+ + ++ V +S
Sbjct: 302 ---------------QRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVS 346
Query: 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVG 1458
+S+ +E+P + G V +VL ++P +R+ +++K + + + N +
Sbjct: 347 QISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPEREDRRGNDGSASRA 406
Query: 1459 DI 1460
DI
Sbjct: 407 DI 408
>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsA PE=1 SV=1
Length = 561
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
+E+L +++G VKN+T G F+ L +D + +++L+ V+ P + +G+ V +
Sbjct: 187 LENLQEGSVIKGIVKNITDYGAFVDLG-GIDGLLHITDLAWRRVKHPSEVLEVGQEVEAK 245
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1480
VL + +RV + +K + + L+ + G + G++ + YG F+ IE
Sbjct: 246 VLKFDQEKQRVSLGMKQ-----LGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQ- 299
Query: 1481 NLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL HVSE+ + + + + + G++V+V IL++D+ +RRISLGMK
Sbjct: 300 GIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMK 348
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
+ E E EF + KL R V +S+R + + R A L NL G ++ G
Sbjct: 147 HFEGKEIEFKVIKLDKKRNNVV--VSRRAVLEATLGEERKAL------LENLQEGSVIKG 198
Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
+K + YG F+ + + GL H+++L+ V + + G++V+ K+LK D+EK+R+
Sbjct: 199 IVKNITDYGAFVDLGGID--GLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRV 256
Query: 1524 SLGMK 1528
SLGMK
Sbjct: 257 SLGMK 261
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 32/275 (11%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
+ EG ++ G + I G V +G + G +H T+L V P + GQ V+ KV
Sbjct: 190 LQEGSVIKGIVKNITDY--GAFVDLGG-IDGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376
L+ + + R SL GM + P L + + G V
Sbjct: 247 LKFDQEKQ---------RVSL-GMKQLG--------EDPWSGLTRRYPQGTRLF--GKVS 286
Query: 1377 NVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
N+T G F+ + + ++ V +S + ++ V P K +G V +L ++ +R+ +
Sbjct: 287 NLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVH-PSKVVQLGDEVEVMILEIDEGRRRISL 345
Query: 1435 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-E 1493
+K + + N+ + GD + G +K + +G+F+ + + GL H+S+LS
Sbjct: 346 GMKQCQANPWEEFAANH----NKGDKISGAVKSITDFGVFVGLPG-GIDGLVHLSDLSWT 400
Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ + Y+ GE+V+ +L +D EK RISLG+K
Sbjct: 401 ESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIK 435
Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 160/373 (42%), Gaps = 41/373 (10%)
Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
FT ++ PG V+ +V+A+D V G+K+ L ++EF+ + + KVG +
Sbjct: 14 FTLQEMNPGEVITAEVVAIDQ--NFVTVNAGLKSES-LIDVAEFKNAQGEIEVKVGDFVT 70
Query: 551 FRVLGVKS--KRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
+ V++ ++ +K + L E D I G I K G V +
Sbjct: 71 VTIESVENGFGETKLSREKAKRAADWIALEEAMENGD--ILSGIINGKVKGGLTV-MISS 127
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVS 662
++ F P S + + P + S + G+ ++ +++ +++ SRR L + R +
Sbjct: 128 IRAFLPGSLVDVRPVKDTS--HFEGKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKA 185
Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPG 721
+ ++ GS++ G+V +T V + G G + LA ++H + V++ G
Sbjct: 186 LLENLQEGSVIKGIVKNITDYGAFVDL---GGIDGLLHITDLAWRRVKHPS---EVLEVG 239
Query: 722 YEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCNIIET 775
E + ++L D E + L K QL D + +P + G V N+ +
Sbjct: 240 QEVEAKVLKFDQEKQRVSLGMK--------QLGEDPWSGLTRRYPQGTRLFGKVSNLTDY 291
Query: 776 GCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQS 833
G FV + G S+ +D ++ SK +G V IL+++ RI+L +KQ
Sbjct: 292 GAFVEIEQGIEGLVHVSE-MDWTNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQ- 349
Query: 834 CCSSTDASFMQEH 846
C ++ F H
Sbjct: 350 CQANPWEEFAANH 362
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 159/408 (38%), Gaps = 54/408 (13%)
Query: 190 GQLVSCIVLQLDDDKKEIG-KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 248
G+ + V++LD + + R+ L L K L LE +QEG V+ VK+I D+G
Sbjct: 150 GKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKAL-LENLQEGSVIKGIVKNITDYGA 208
Query: 249 ILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVS 304
+ G G L +LA ++ ++ G ++ V D+ ++ V L
Sbjct: 209 FVDLG--GIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGM------ 260
Query: 305 KCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWK 364
K + +D G + +V ++ + G + G V + + T +
Sbjct: 261 KQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPS 320
Query: 365 NDYNQHKKVNARILFVDPTSRAVGLTL-----NPY----LLHNRAPPSHVKVGDIYDQSK 415
+V IL +D R + L + NP+ HN+ V I D
Sbjct: 321 KVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITD--- 377
Query: 416 VVRVDRGLGLLLDIPSTPVSTPAYVTISDVA-----EEEVRKLEKKYKEGSCVRVRILGF 470
G+ + +P V +SD++ EE VRK YK+G V +L
Sbjct: 378 -------FGVFVGLPG---GIDGLVHLSDLSWTESGEEAVRK----YKKGEEVEAVVLAI 423
Query: 471 R-HLEGLATGI--LKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCP 527
E ++ GI L+ F + + G +VKG V +VD+ GA++ V+ P
Sbjct: 424 DVEKERISLGIKQLEGDPFGNFISVND---KGSLVKGSVKSVDAKGAVIALSDEVEGYLP 480
Query: 528 LPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA 575
+ + K K G E+ ++ V K ++ K VK+K A
Sbjct: 481 ASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKNRSI---KLSVKAKDA 525
>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsA PE=1 SV=1
Length = 400
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 6/165 (3%)
Query: 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424
L+ +V G V +TS G FI L +D V L+ LS SP+ +G+ + ++L
Sbjct: 191 LAVGDVVTGKVARITSFGAFIDLG-GVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILD 249
Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1484
+ RV ++LK + E L GD+V G +KR+ +G F+ + + G
Sbjct: 250 LNEEEGRVSLSLKATVPGPWDGVE----QKLAKGDVVEGTVKRLTDFGAFVEV-LPGIDG 304
Query: 1485 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529
L HVS++S ++N + + G++V+VK+L+V+ + R+SL +K+
Sbjct: 305 LVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKA 349
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 95/187 (50%), Gaps = 23/187 (12%)
Query: 1260 GDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319
GD+V G++++I S G + +G + G VH TEL + P S G+ ++ K+L++
Sbjct: 194 GDVVTGKVARITSF--GAFIDLG-GVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDL 250
Query: 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT 1379
+ V LSL++++ G P +E + L+ +V+G VK +T
Sbjct: 251 NEE---EGRVSLSLKATVPG---------------PWDGVE--QKLAKGDVVEGTVKRLT 290
Query: 1380 SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439
G F+ + +D V +S +S +E+P++ +G+ V +VL V ++RV +++K
Sbjct: 291 DFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKAL 350
Query: 1440 DSRTASQ 1446
+ R A +
Sbjct: 351 EERPAQE 357
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 153/366 (41%), Gaps = 41/366 (11%)
Query: 486 FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPG-GVKALCPLPHMSE------FEIVK 538
FE L+ + S V+ G VV +V+ VD+ A V G GV+ + L ++ + VK
Sbjct: 4 FEDLLNSVSQVETGDVVSAEVLTVDATQANVAISGTGVEGVLTLRELTNDRDADINDFVK 63
Query: 539 PGKKFKVGAELVFR-VLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
G+ V LV R V+G + +T K ++++ A + + G T+
Sbjct: 64 VGEVLDV---LVLRQVVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAV 118
Query: 598 KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF-MM 656
K G V F GV+GF P S L D ++ VGQ +I R LS +
Sbjct: 119 KGGLSVEF-EGVRGFIPASML--DTRFVRNAERFVGQEFDTKIKEVNAKENRFILSRREV 175
Query: 657 KPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM-- 714
+ G L G DVVT +A+ S G D L H T +
Sbjct: 176 VEAATAAARAEVFGKLAVG--DVVTGK------VARITSFGAFIDLGGVDGLVHLTELSH 227
Query: 715 ------KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVV 765
KSV+ G E + ++L L+ E + LS K ++ P D + VV
Sbjct: 228 ERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATVPG-----PWDGVEQKLAKGDVV 282
Query: 766 HGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR 825
G V + + G FV L + G S+ + + + VGQ V+ +L+VN++ R
Sbjct: 283 EGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAER 342
Query: 826 ITLSLK 831
++LS+K
Sbjct: 343 VSLSIK 348
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 6/169 (3%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G VV GKV + SFGA + GGV L L +S V P VG E+ ++L +
Sbjct: 194 GDVVTGKVARITSFGAFIDL-GGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNE 252
Query: 559 K--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
+ R++++ K T+ + A+ + G + ++ G FV G+ G S
Sbjct: 253 EEGRVSLSLKATVPGPWDGVEQKLAKGD---VVEGTVKRLTDFGAFVEVLPGIDGLVHVS 309
Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDD 665
++ P VGQ V+ +++ + R++LS R ++++
Sbjct: 310 QISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERPAQEE 358
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 144/373 (38%), Gaps = 64/373 (17%)
Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDL 666
GV+G EL D + + VG+V+ ++ + +++++ R+
Sbjct: 39 TGVEGVLTLRELTNDRDADINDFVKVGEVLDVLVLRQVVGKDTDTVTYLVSKKRLEARK- 97
Query: 667 VKLGSLVSGVVDVVTPNAVVVYVIAKGYS------KGTIPTEHLADHLEHATVMKSVIKP 720
LV +VVT + G S +G IP A L+ V +
Sbjct: 98 -AWDKLVGREEEVVTVKGT--RAVKGGLSVEFEGVRGFIP----ASMLDTRFVRNAERFV 150
Query: 721 GYEFDQLLVLDNESSN-LLLSAKYSLINSAQQLPSDA-SHIHPNSVVHGYVCNIIETGCF 778
G EFD + N N +LS + + + ++ + VV G V I G F
Sbjct: 151 GQEFDTKIKEVNAKENRFILSRREVVEAATAAARAEVFGKLAVGDVVTGKVARITSFGAF 210
Query: 779 VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838
+ LG + G ++ + VG+ + ILD+N E GR++LSLK +
Sbjct: 211 ID-LGGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEGRVSLSLKATVPGPW 269
Query: 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHS 898
D +E+K+A G V+EG V DFG V E
Sbjct: 270 DG--------VEQKLAK-------------------GDVVEGTVKRLTDFGAFV--EVLP 300
Query: 899 DVYGFITHHQLAGATVES-------GSVIQAAILDV-AKAERLVDLSLKTVFIDRFREAN 950
+ G + Q++ +E+ G +Q +L+V A AER V LS+K A
Sbjct: 301 GIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAER-VSLSIK---------AL 350
Query: 951 SNRQAQKKKRKRE 963
R AQ++ +K E
Sbjct: 351 EERPAQEEGQKEE 363
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
L VGD+V G++ R+ S+G FI + + GL H++ELS + + +++ GE+++V
Sbjct: 188 FGKLAVGDVVTGKVARITSFGAFIDLGGVD--GLVHLTELSHERNVSPKSVVTVGEEIEV 245
Query: 1512 KILKVDKEKRRISLGMKSSY-FKNDADNLQMSSEEESDEAIEEVGSYNR--------SSL 1562
KIL +++E+ R+SL +K++ D +++ + + ++ + + L
Sbjct: 246 KILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGL 305
Query: 1563 LENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQ 1605
+ S ++ + ++ E +L + Q V LEVN D E+
Sbjct: 306 VHVSQISHKRIENPKE---ALKVGQ---EVQVKVLEVNADAER 342
>sp|Q895G2|ISPH_CLOTE 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
tetani (strain Massachusetts / E88) GN=ispH PE=3 SV=1
Length = 635
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 142/306 (46%), Gaps = 36/306 (11%)
Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
+++++ F+ +GDI+ G+I K+ S V+ + L + ELK +
Sbjct: 335 NDEDINNFVKKGDIIKGKIIKLGSENKPPVISV-IELNRENAYVELKEAFENKEKVVVKV 393
Query: 1309 GQFVKCKVLEISRTVRGTF----HVELSLRSSLDGMSSTNSSDLSTDV------------ 1352
+ V ++ I + + F HVEL +D +S +L+ ++
Sbjct: 394 KEDVNGGLISIYKNIVRVFIPASHVELR---HVDDLSIYKGCELTVNIIEFEEGRNNTRI 450
Query: 1353 -----DTPGKHLEKIED-----LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD 1402
D + K+E+ L + I +G V+ +T G F+ ++ +D + +S +S
Sbjct: 451 VASRRDLLKEEQSKVEEETWSSLEKDTIKEGEVRRLTDFGAFVNIN-GVDGLLHVSEISW 509
Query: 1403 GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVI 1462
G VE P +G + + ++ K++ +++K E+ VG+IV+
Sbjct: 510 GRVEKPSDMLKVGDKIKVYIKDIDKDKKKLALSIKDLTKDPWKDVEVK----YPVGNIVL 565
Query: 1463 GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522
G + R S+G F+ +E + GL H+S++S VD +E GE+VK KI++VD EKR+
Sbjct: 566 GTVVRFASFGAFVELE-PGVDGLIHISQISHKRVDRVEDELSIGEQVKAKIVEVDGEKRK 624
Query: 1523 ISLGMK 1528
I L +K
Sbjct: 625 IGLSIK 630
>sp|Q9ZD28|RS1_RICPR 30S ribosomal protein S1 OS=Rickettsia prowazekii (strain Madrid E)
GN=rpsA PE=3 SV=1
Length = 568
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 156/362 (43%), Gaps = 24/362 (6%)
Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
IL+ S E S +K G+V++G V + +GA + G V L L +S + P
Sbjct: 186 ILEESRSEARDEMLSKIKEGIVLEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHP 244
Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
+ + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKK---MTGKVTNFA 301
Query: 598 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
+G F+ +G++G SE+ L P M +GQ V+ ++ R++LS
Sbjct: 302 DYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSI-- 359
Query: 657 KPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
+ E+ L+K +G+++ + +T + +V+ G I ++
Sbjct: 360 --KQCQENPLIKFAENNPIGTIIKAPIRNITDFGI--FVVLGNNMDGMIHEGDISWEDNG 415
Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
++KS K G E + ++L ++ E + L K L N Q++ + +++V V
Sbjct: 416 TDLLKSY-KKGDEIECKVLAINFEKEQVSLGIKQLLPNPYQKI---SDEYKKSTIVKAVV 471
Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
I + G V ++TGF R + D + + + V + + + ++ + TGR+ LS
Sbjct: 472 TEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFKVHEEIDAKVVSIEKSTGRVLLS 531
Query: 830 LK 831
+K
Sbjct: 532 IK 533
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 131/284 (46%), Gaps = 34/284 (11%)
Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
+ D M + I EG ++ G + I G + +G + G +H T++ V+ P +
Sbjct: 194 ARDEMLSKIKEGIVLEGVVKNITDY--GAFIDLG-SVDGLLHLTDISWGRVNHPSEVLEF 250
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
Q VK V++ + + L ++ LD +N D + GK +
Sbjct: 251 NQKVKVMVIKFDEKTK---RISLGIKQ-LD----SNPWDAIKEEFPVGKKM--------- 293
Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSV 1425
G V N G F+ L L+ V S +S +++S P K IG+ V VL V
Sbjct: 294 ---TGKVTNFADYGVFLELKDGLEGLVHSSEIS--WLKSNQNPRKMLTIGQEVEFIVLEV 348
Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
+ RV +++K + NN +G I+ I+ + +G+F+ + N N+ G+
Sbjct: 349 DTEKHRVSLSIKQCQENPLIKFAENN----PIGTIIKAPIRNITDFGIFVVLGN-NMDGM 403
Query: 1486 CHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
H ++S ED+ ++ Y+ G++++ K+L ++ EK ++SLG+K
Sbjct: 404 IHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIK 447
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 136/613 (22%), Positives = 250/613 (40%), Gaps = 109/613 (17%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +K VVKG+VI + + IV G+K +P + + G +V E ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLSLPEVGDVVEVFIE---KI 88
Query: 554 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
F P S++ + P +P+S+ ++ Q K + + +I SRR+ L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKI 202
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
K G ++ GVV +T + + G G + HL D + H + + E
Sbjct: 203 KEGIVLEGVVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249
Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 776
F+Q ++ D ++ + L K N P DA + G V N + G
Sbjct: 250 FNQKVKVMVIKFDEKTKRISLGIKQLDSN-----PWDAIKEEFPVGKKMTGKVTNFADYG 304
Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
F+ L G S + +++ + K +GQ V +L+V++E R++LS+KQ C
Sbjct: 305 VFLELKDGLEGLV-HSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQ-C 362
Query: 835 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
QE+ L +K+ E IG++I+ + DFG+ V
Sbjct: 363 ---------QENPL-----------------IKFAENNPIGTIIKAPIRNITDFGIFVVL 396
Query: 895 EEHSDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
+ D G I ++ + + G I+ +L + + V L +K + + +
Sbjct: 397 GNNMD--GMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLLPNPY 454
Query: 947 REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 1006
++ + + V A+V +K++ LV+ L N G+ + +
Sbjct: 455 QKISDEYKKS---------------TIVKAVVTEIKDDGLVVLL--NNKVTGFIKRVELS 497
Query: 1007 TQKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYD 1062
+K QK F + + A V+++ S+ GR+LL +KA I+E + + + ++ +
Sbjct: 498 DEKDEQKPEMFKVHEEIDAKVVSIEKST--GRVLLSIKAHKIAERQKTLKEYGSSDNTTN 555
Query: 1063 VGSLVQAEITEIK 1075
+G ++ + E K
Sbjct: 556 MGDILANVLEEKK 568
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
+SR+ ++ E+ LS + G ++ G +K + YG FI + + + GL H++++S V++
Sbjct: 189 ESRSEARDEM--LSKIKEGIVLEGVVKNITDYGAFIDLGSVD--GLLHLTDISWGRVNHP 244
Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ +KVKV ++K D++ +RISLG+K
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIK 273
Score = 39.3 bits (90), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 119/277 (42%), Gaps = 32/277 (11%)
Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
+G+++TG V + L + L+ + + ++ S Q ++ IG+ V VL
Sbjct: 289 VGKKMTGKVTNFADYGVFLELKDGLEGLVHSSEISWLKSN-QNPRKMLTIGQEVEFIVLE 347
Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
++ EK + L ++ Q+ + + + +N G I+ I I G+ V +G
Sbjct: 348 VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PIGTIIKAPIRNITDF--GIFVVLG 397
Query: 1283 PHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1341
++ G +H ++ +D L Y +G ++CKVL I+ V L ++ L
Sbjct: 398 NNMDGMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKE---QVSLGIKQLL---- 450
Query: 1342 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1401
P + + ++ + IV+ V + G ++L+ K+ + LS
Sbjct: 451 -------------PNPYQKISDEYKKSTIVKAVVTEIKDDGLVVLLNNKVTGFIKRVELS 497
Query: 1402 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
D E + F + + + +V+S+E + RV +++K
Sbjct: 498 DEKDEQKPEMFKVHEEIDAKVVSIEKSTGRVLLSIKA 534
>sp|Q89AJ3|RS1_BUCBP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rpsA PE=3 SV=2
Length = 566
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 131/277 (47%), Gaps = 36/277 (12%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
+ EG IV G I K L+ G V G + G +H T++ V P + G VK K+
Sbjct: 189 LQEGLIVSG-IVKNLTDYGAFVDLGG--VDGLLHITDMAWKRVKHPSEIVNIGDEVKIKI 245
Query: 1317 LEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI-VQGYV 1375
L+ R V L L+ LS D T KI + P + G V
Sbjct: 246 LKFDRE---KIRVSLGLKQ------------LSDDPWT------KISERYPEKTKITGRV 284
Query: 1376 KNVTSKGCFIMLSRKLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433
N+T GCF+ + ++ V +S + ++ + P K + +V +L ++ +R+
Sbjct: 285 TNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKMVQVNSVVKVMILDIDEERRRIS 343
Query: 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE 1493
+ LK + + + G V+G+IK + +G+FI +E + + GL H+S++S
Sbjct: 344 LGLKQCKNNPWMEFS----KKYNKGSHVVGKIKSITDFGIFIGLEGS-IDGLVHLSDISW 398
Query: 1494 DHVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMK 1528
+ + E++ Y+ GE+V +L+VD ++ RISLG+K
Sbjct: 399 N-ISGEESVKKYKKGEEVLAVVLQVDPDRERISLGIK 434
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 11/170 (6%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
+E L +IV G VKN+T G F+ L +D + +++++ V+ P + IG V +
Sbjct: 186 LETLQEGLIVSGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNIGDEVKIK 244
Query: 1422 VLSVEPLSKRVEVTLKT-SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
+L + RV + LK SD SE + G++ + YG F+ IE
Sbjct: 245 ILKFDREKIRVSLGLKQLSDDPWTKISE-----RYPEKTKITGRVTNLTDYGCFVEIEE- 298
Query: 1481 NLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL HVSE+ + NI + + VKV IL +D+E+RRISLG+K
Sbjct: 299 GVEGLVHVSEMDWTN-KNIHPSKMVQVNSVVKVMILDIDEERRRISLGLK 347
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLG 555
++ G++V G V + +GA V GGV L + M+ + P + +G E+ ++L
Sbjct: 189 LQEGLIVSGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILK 247
Query: 556 VKSKRITVTHK-KTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFA 613
++I V+ K L +S Y E T IT G +T + +GCFV GV+G
Sbjct: 248 FDREKIRVSLGLKQLSDDPWTKISERYPEKTK--IT-GRVTNLTDYGCFVEIEEGVEGLV 304
Query: 614 PRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
SE+ + PS M V VVK I+ RRI+L
Sbjct: 305 HVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGL 346
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 1442 RTASQSEINN-----LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496
R +SE N L L G IV G +K + YG F+ + + GL H+++++ V
Sbjct: 171 RAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRV 228
Query: 1497 DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ I G++VK+KILK D+EK R+SLG+K
Sbjct: 229 KHPSEIVNIGDEVKIKILKFDREKIRVSLGLK 260
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 148/349 (42%), Gaps = 55/349 (15%)
Query: 1191 LFILDSAYE----PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTV 1246
L I D A++ PSE+ +IG V +L ++EK + L L+ D D
Sbjct: 218 LHITDMAWKRVKHPSEI------VNIGDEVKIKILKFDREKIRVSLGLKQLSD---DPWT 268
Query: 1247 DISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTEL----KNICVSDP 1302
IS E + GR++ + G V+I + G VH +E+ KNI P
Sbjct: 269 KISER-----YPEKTKITGRVTNLTDY--GCFVEIEEGVEGLVHVSEMDWTNKNIH---P 318
Query: 1303 LSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKI 1362
VK +L+I R + L L+ + S + G H
Sbjct: 319 SKMVQVNSVVKVMILDIDEERR---RISLGLKQCKNNPWMEFSKKYN-----KGSH---- 366
Query: 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGR 1421
V G +K++T G FI L +D V LS++S E K++ G+ V
Sbjct: 367 --------VVGKIKSITDFGIFIGLEGSIDGLVHLSDISWNISGEESVKKYKKGEEVLAV 418
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN-- 1479
VL V+P +R+ + +K ++ +S+ G +V G IK++++ + +++
Sbjct: 419 VLQVDPDRERISLGIKQLQEDPFAKY----VSSHKKGSLVSGTIKKIDNNVIVVSLSEHI 474
Query: 1480 TNLVGLCHVS-ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527
L+ ++S E+ H + + GE V+VK+ +DK++R I L +
Sbjct: 475 DGLIKFLNISDEIMNVHDNKPWNKAKIGEIVEVKLNSIDKKERIIYLSI 523
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 113/531 (21%), Positives = 213/531 (40%), Gaps = 87/531 (16%)
Query: 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556
+PG +++G V+A+ +V +K+ +P + +F+ + + KVG ++ + +
Sbjct: 19 RPGSIIQGTVVAITKDTILVD--AKLKSESKIP-IDQFKNSQGELEVKVGDQIDVALDAI 75
Query: 557 KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616
+ + K A L+ D G I K G V + ++ F P S
Sbjct: 76 EDGFGETLLSREKAKRHEAWLTLEQAYKDSKTVVGLINGKVKGGFTVELED-IRAFLPGS 134
Query: 617 ELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVKLG 670
+ + P E +M+ G+ ++ +++ +++ SRR + R + ++ G
Sbjct: 135 LVDIRPVRE--TMHLEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEG 192
Query: 671 SLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-QLL 728
+VSG+V +T V + G G + +A ++H + ++ G E ++L
Sbjct: 193 LIVSGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNIGDEVKIKIL 246
Query: 729 VLDNESSNLLLSAKYSLINSAQQLPSDA----SHIHPNSV-VHGYVCNIIETGCFVRFLG 783
D E + L K QL D S +P + G V N+ + GCFV
Sbjct: 247 KFDREKIRVSLGLK--------QLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIEE 298
Query: 784 RLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDAS 841
+ G S+ +D ++ SK V V+ ILD++ E RI+L LKQ C ++
Sbjct: 299 GVEGLVHVSE-MDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQ-CKNNPWME 356
Query: 842 FMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE------ 895
F S K+N GS + GK+ DFG+ + E
Sbjct: 357 F---------------SKKYNK-----------GSHVVGKIKSITDFGIFIGLEGSIDGL 390
Query: 896 -EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQ 954
SD+ I+ + + + G + A +L V + L +K + D F + S+ +
Sbjct: 391 VHLSDISWNISGEE-SVKKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPFAKYVSSHK 449
Query: 955 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEY-NHSIGYASVSD 1004
V+ ++ + N +V+SL E+ + I + ++SD
Sbjct: 450 K---------------GSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLNISD 485
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 159/392 (40%), Gaps = 80/392 (20%)
Query: 223 KGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE----------NSGI 272
+ L LET+QEG++++ VK++ D+G + G G L ++A N G
Sbjct: 182 RNLLLETLQEGLIVSGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNIGD 239
Query: 273 DVKPGLLLQGVVRSIDRTRKVV-----YLSSDPDT-VSKCVTKDLKGISIDLLVPGMMVS 326
+VK +L DR + V LS DP T +S+ + K ++
Sbjct: 240 EVKIKIL------KFDREKIRVSLGLKQLSDDPWTKISERYPEKTK------------IT 281
Query: 327 TRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRA 386
RV ++ + G + G V + + T + + V IL +D R
Sbjct: 282 GRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRR 341
Query: 387 VGLTL-----NPYLLHNRA--PPSHV--KVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTP 437
+ L L NP++ ++ SHV K+ I D G+ + + S
Sbjct: 342 ISLGLKQCKNNPWMEFSKKYNKGSHVVGKIKSITD----------FGIFIGLEG---SID 388
Query: 438 AYVTISDVA-----EEEVRKLEKKYKEGSCVRVRILGFR-HLEGLATGI--LKASAFEGL 489
V +SD++ EE V KKYK+G V +L E ++ GI L+ F
Sbjct: 389 GLVHLSDISWNISGEESV----KKYKKGEEVLAVVLQVDPDRERISLGIKQLQEDPFAKY 444
Query: 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIV-----KPGKKFK 544
V +H K G +V G + +D+ +V + L ++S+ EI+ KP K K
Sbjct: 445 VSSH---KKGSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLNISD-EIMNVHDNKPWNKAK 500
Query: 545 VGAELVFRVLGVKSKRITVTHKKTLVKSKLAI 576
+G E+V L K+ + + L K +L I
Sbjct: 501 IG-EIVEVKLNSIDKKERIIYLSILEKQELKI 531
>sp|Q68WL4|RS1_RICTY 30S ribosomal protein S1 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpsA PE=3 SV=1
Length = 568
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 154/362 (42%), Gaps = 24/362 (6%)
Query: 480 ILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539
IL+ S E S +K GM+++G V + +GA + G V L L +S + P
Sbjct: 186 ILEESRSEARDEMLSKIKEGMILEGVVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNHP 244
Query: 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIE 597
+ + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKK---MTGKVTNFA 301
Query: 598 KHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656
+G F+ +G++G SE+ L P M +GQ V+ ++ R++LS
Sbjct: 302 DYGVFLELKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSI-- 359
Query: 657 KPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEH 710
+ E+ L+K +G+++ + +T + +V+ G I ++
Sbjct: 360 --KQCQENPLIKFAENNPIGTIIKAPIRNITDFGI--FVVLGNNMDGMIHEGDISWEDNG 415
Query: 711 ATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYV 769
++KS K G E + ++L ++ E + L K N Q++ + ++V V
Sbjct: 416 TDLLKSY-KKGDEIECKVLAINFEKEQVSLGIKQLSPNPYQKI---SDEYKKGTIVKAVV 471
Query: 770 CNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829
I + G V ++TGF R + D + + + V + + + ++ + TGR+ LS
Sbjct: 472 TEIKDDGLVVLLNNKVTGFIKRVELSDEKDEQKPEMFQVDEEIDAKVVSIEKSTGRVLLS 531
Query: 830 LK 831
+K
Sbjct: 532 VK 533
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 131/284 (46%), Gaps = 34/284 (11%)
Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
+ D M + I EG I+ G + I G + +G + G +H T++ V+ P +
Sbjct: 194 ARDEMLSKIKEGMILEGVVKNITDY--GAFIDLG-SVDGLLHLTDISWGRVNHPSEVLEF 250
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
Q VK V++ + + L ++ LD +N D + GK +
Sbjct: 251 NQKVKVMVIKFDEKTK---RISLGIKQ-LD----SNPWDAIKEEFPVGKKM--------- 293
Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSV 1425
G V N G F+ L L+ V S +S +++S P K IG+ V VL V
Sbjct: 294 ---TGKVTNFADYGVFLELKDGLEGLVHSSEIS--WLKSNQNPRKMLTIGQEVEFIVLEV 348
Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
+ RV +++K + NN +G I+ I+ + +G+F+ + N N+ G+
Sbjct: 349 DTEKHRVSLSIKQCQENPLIKFAENN----PIGTIIKAPIRNITDFGIFVVLGN-NMDGM 403
Query: 1486 CHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
H ++S ED+ ++ Y+ G++++ K+L ++ EK ++SLG+K
Sbjct: 404 IHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIK 447
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 136/613 (22%), Positives = 250/613 (40%), Gaps = 109/613 (17%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +K VVKG+VI + + IV G+K +P + + G +V E ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDMIIVDV--GLKNEGRIPKSEFLSLPEVGDVVEVFIE---KI 88
Query: 554 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
F P S++ + P +P+S+ ++ Q K + + +I SRR+ L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKI 202
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
K G ++ GVV +T + + G G + HL D + H + + E
Sbjct: 203 KEGMILEGVVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249
Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETG 776
F+Q ++ D ++ + L K N P DA + G V N + G
Sbjct: 250 FNQKVKVMVIKFDEKTKRISLGIKQLDSN-----PWDAIKEEFPVGKKMTGKVTNFADYG 304
Query: 777 CFVRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETGRITLSLKQSC 834
F+ L G S + +++ + K +GQ V +L+V++E R++LS+KQ C
Sbjct: 305 VFLELKDGLEGLV-HSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQ-C 362
Query: 835 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894
QE+ L +K+ E IG++I+ + DFG+ V
Sbjct: 363 ---------QENPL-----------------IKFAENNPIGTIIKAPIRNITDFGIFVVL 396
Query: 895 EEHSDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
+ D G I ++ + + G I+ +L + + V L +K + + +
Sbjct: 397 GNNMD--GMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVSLGIKQLSPNPY 454
Query: 947 REANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN 1006
++ + + V A+V +K++ LV+ L N G+ + +
Sbjct: 455 QKISDEYKK---------------GTIVKAVVTEIKDDGLVVLL--NNKVTGFIKRVELS 497
Query: 1007 TQKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYD 1062
+K QK F + + A V+++ S+ GR+LL +KA I+E + + + ++ +
Sbjct: 498 DEKDEQKPEMFQVDEEIDAKVVSIEKST--GRVLLSVKAHKIAERQKTLKEYGSSDNTTN 555
Query: 1063 VGSLVQAEITEIK 1075
+G ++ + E K
Sbjct: 556 MGDILANVLEEKK 568
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
+SR+ ++ E+ LS + G I+ G +K + YG FI + + + GL H++++S V++
Sbjct: 189 ESRSEARDEM--LSKIKEGMILEGVVKNITDYGAFIDLGSVD--GLLHLTDISWGRVNHP 244
Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ +KVKV ++K D++ +RISLG+K
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIK 273
Score = 38.1 bits (87), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 118/277 (42%), Gaps = 32/277 (11%)
Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
+G+++TG V + L + L+ + + ++ S Q ++ IG+ V VL
Sbjct: 289 VGKKMTGKVTNFADYGVFLELKDGLEGLVHSSEISWLKSN-QNPRKMLTIGQEVEFIVLE 347
Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
++ EK + L ++ Q+ + + + +N G I+ I I G+ V +G
Sbjct: 348 VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PIGTIIKAPIRNITDF--GIFVVLG 397
Query: 1283 PHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1341
++ G +H ++ +D L Y +G ++CKVL I+ V L ++
Sbjct: 398 NNMDGMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKE---QVSLGIKQL----- 449
Query: 1342 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1401
+P + + ++ IV+ V + G ++L+ K+ + LS
Sbjct: 450 ------------SPNPYQKISDEYKKGTIVKAVVTEIKDDGLVVLLNNKVTGFIKRVELS 497
Query: 1402 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
D E + F + + + +V+S+E + RV +++K
Sbjct: 498 DEKDEQKPEMFQVDEEIDAKVVSIEKSTGRVLLSVKA 534
>sp|Q92HM4|RS1_RICCN 30S ribosomal protein S1 OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=rpsA PE=3 SV=1
Length = 568
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 134/284 (47%), Gaps = 34/284 (11%)
Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
+ D M + I EG ++ G + I G + +G + G +H T++ V+ P D
Sbjct: 194 ARDEMLSKIKEGMVLEGTVKNITDY--GAFIDLG-SVDGLLHLTDISWGRVNHPSEVLDF 250
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
Q VK V++ E + R SL G+ +S+ P + ++ E+
Sbjct: 251 NQKVKVMVIKFD---------EKNKRISL-GIKQLDSN--------PWEAIK--EEFPVG 290
Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSV 1425
+ G V N G FI L L+ V S +S +++S P K IG+ V VL V
Sbjct: 291 KQMTGKVTNFADYGVFIELKDGLEGLVHSSEIS--WLKSNQNPRKTLTIGQEVEFVVLEV 348
Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
+ RV +++K ++ NN VG I+ I+ + +G+F+ + N N+ G+
Sbjct: 349 DTEKHRVSLSIKQCQENPLTKFAENN----PVGTIIKAPIRNITDFGIFVALGN-NMDGM 403
Query: 1486 CHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
H ++S ED ++ Y+ G++++ K+L ++ EK ++SLG+K
Sbjct: 404 IHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIK 447
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 153/361 (42%), Gaps = 20/361 (5%)
Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
IL+ S E S +K GMV++G V + +GA + G V L L +S +
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243
Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
P + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 244 PSEVLDFNQKVKVMVIKFDEKNKRISLGIKQLDSNPWEAIKEEFPVGKQ---MTGKVTNF 300
Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
+G F+ +G++G SE+ L P +GQ V+ ++ R++LS
Sbjct: 301 ADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIK 360
Query: 656 M---KP-TRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHA 711
P T+ +E++ V G+++ + +T + +V G I ++ +
Sbjct: 361 QCQENPLTKFAENNPV--GTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDKGT 416
Query: 712 TVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVC 770
++KS K G E + ++L ++ E + L K N Q++ + ++V +
Sbjct: 417 DLLKSY-KKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQEI---SDEYKKGTIVKALIT 472
Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830
+ + G V ++ GF R++ D + + + + + + + ++ + TGRI LS+
Sbjct: 473 EVKDEGLEVLLNDKVAGFIKRTELSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSV 532
Query: 831 K 831
K
Sbjct: 533 K 533
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 132/601 (21%), Positives = 246/601 (40%), Gaps = 101/601 (16%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +K VVKG+VI + + IV G+K +P + + G +V E ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDIIIVDV--GLKNEGRIPKSEFLALPEVGDVVEVFIE---KI 88
Query: 554 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
F P S++ + P +P+S+ ++ Q K + + +I SRR L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKI 202
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
K G ++ G V +T + + G G + HL D + H + + +
Sbjct: 203 KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LD 249
Query: 724 FDQ---LLVLDNESSNLLLSAKYSLINSAQQLPSDA--SHIHPNSVVHGYVCNIIETGCF 778
F+Q ++V+ + N +S ++S P +A + G V N + G F
Sbjct: 250 FNQKVKVMVIKFDEKNKRISLGIKQLDSN---PWEAIKEEFPVGKQMTGKVTNFADYGVF 306
Query: 779 VRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
+ L G S + +++ + KT +GQ V +L+V++E R++LS+KQ C
Sbjct: 307 IELKDGLEGLV-HSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C-- 362
Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
QE+ L K+ E +G++I+ + DFG+ V+
Sbjct: 363 -------QENPL-----------------TKFAENNPVGTIIKAPIRNITDFGIFVALGN 398
Query: 897 HSDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
+ D G I ++ + + G I+ +L + + V L +K + + ++E
Sbjct: 399 NMD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGIKQLSPNPYQE 456
Query: 949 ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
+ + +K K L I E+ E VL + I +SD +
Sbjct: 457 ISD------EYKKGTIVKAL--------ITEVKDEGLEVLLNDKVAGFIKRTELSDEKDE 502
Query: 1009 KFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVGSL 1066
+ P+ F + + A V+++ S+ GR+LL +KA I+E + + + ++ ++G +
Sbjct: 503 QKPE-MFQIDKEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMGDI 559
Query: 1067 V 1067
+
Sbjct: 560 L 560
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
+SR+ ++ E+ LS + G ++ G +K + YG FI + + + GL H++++S V++
Sbjct: 189 ESRSEARDEM--LSKIKEGMVLEGTVKNITDYGAFIDLGSVD--GLLHLTDISWGRVNHP 244
Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ +KVKV ++K D++ +RISLG+K
Sbjct: 245 SEVLDFNQKVKVMVIKFDEKNKRISLGIK 273
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 119/279 (42%), Gaps = 36/279 (12%)
Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
+G+++TG V + + + L+ + + ++ S Q ++ IG+ V VL
Sbjct: 289 VGKQMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347
Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVG--GLVVQ 1280
++ EK + L ++ Q+ N T E + VG I + + G+ V
Sbjct: 348 VDTEKHRVSLSIKQCQE------------NPLTKFAENNPVGTIIKAPIRNITDFGIFVA 395
Query: 1281 IGPHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDG 1339
+G ++ G +H ++ +D L Y +G ++CKVL I+ V L ++
Sbjct: 396 LGNNMDGMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKE---QVSLGIKQL--- 449
Query: 1340 MSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399
+P + E ++ IV+ + V +G ++L+ K+ + +
Sbjct: 450 --------------SPNPYQEISDEYKKGTIVKALITEVKDEGLEVLLNDKVAGFIKRTE 495
Query: 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
LSD E + F I K + +V+S+E + R+ +++K
Sbjct: 496 LSDEKDEQKPEMFQIDKEIEAKVVSIEKSTGRILLSVKA 534
>sp|Q1RJH1|RS1_RICBR 30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C)
GN=rpsA PE=3 SV=1
Length = 572
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 154/335 (45%), Gaps = 48/335 (14%)
Query: 1199 EPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIH 1258
+PS + ++ F I ++ +KKL +V+ + I +++ + D M + I
Sbjct: 159 DPSSIMNIRQPFKI----------LSMDKKLGNIVVS--RRAILEESRSEARDEMLSKIK 206
Query: 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318
EG I+ G + I G + +G + G +H T++ V+ P + Q VK V++
Sbjct: 207 EGMILEGTVKNITDY--GAFIDLG-SVDGLLHLTDISWARVNHPSEVLEFNQKVKVMVIK 263
Query: 1319 ISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSP-NMIVQGYVKN 1377
+ + R SL GM + + EKI++ P + G V N
Sbjct: 264 FNEETK---------RISL-GMKQLDYN-----------PWEKIKEEFPVGKKMTGKVTN 302
Query: 1378 VTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLSKRVEV 1434
G FI L L+ V S +S +++S P K IG+ V VL V+ RV +
Sbjct: 303 FADYGVFIELKDGLEGLVHSSEIS--WLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSL 360
Query: 1435 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-E 1493
++K + N VG ++ I+ + +G+F+ + + NL G+ H +++ E
Sbjct: 361 SIKQCQQNPLIKFAETN----PVGTVIKAPIRNITDFGIFVALSD-NLDGMIHEGDITWE 415
Query: 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
D+ + + Y+ G++V+ K+L ++ EK +ISLG+K
Sbjct: 416 DNGNELLKTYKKGDEVECKVLTINIEKEQISLGIK 450
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 135/609 (22%), Positives = 249/609 (40%), Gaps = 114/609 (18%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +KPG VVKG+V+ ++ + G+K +P SEF ++ P K +LV
Sbjct: 34 SHIKPGTVVKGQVVDINEVVVVDV---GLKNEGRIPK-SEF-LLSPAHKLPEIGDLV--- 85
Query: 554 LGVKSKRITVTHKKTLVKSK---------LAILSSYAEATDRLITHGWITKIEKHGCFVR 604
V ++ KTL + K L ++ S E D I G + G F
Sbjct: 86 -DVYIEKTEGHSGKTLSREKAIKEELWGQLELICSKGEFVDGTI-FGRV-----KGGFTV 138
Query: 605 FYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTR 660
+GV F P S++ + P +PSS+ ++ Q K + + +I SRR L R
Sbjct: 139 DLSGVVAFLPGSQVDVRPIKDPSSIMNIRQPFKILSMDKKLGNIVVSRRAILEESRSEAR 198
Query: 661 VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKS 716
+K G ++ G V +T + + G G + HL D + H + +
Sbjct: 199 DEMLSKIKEGMILEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWARVNHPSEV-- 250
Query: 717 VIKPGYEFDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCN 771
EF+Q ++ + E+ + L K N +++ + + G V N
Sbjct: 251 -----LEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKIKEE---FPVGKKMTGKVTN 302
Query: 772 IIETGCFVRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETGRITLS 829
+ G F+ L G S + +++ + KT +GQ V +L+V++E R++LS
Sbjct: 303 FADYGVFIELKDGLEGLV-HSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLS 361
Query: 830 LKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFG 889
+KQ C Q++ L+ K+ E +G+VI+ + DFG
Sbjct: 362 IKQ--C--------QQNPLI-----------------KFAETNPVGTVIKAPIRNITDFG 394
Query: 890 VVVSFEEHSDVY---GFITHHQLAG---ATVESGSVIQAAILDVAKAERLVDLSLKTVFI 943
+ V+ ++ D G IT T + G ++ +L + + + L +K +
Sbjct: 395 IFVALSDNLDGMIHEGDITWEDNGNELLKTYKKGDEVECKVLTINIEKEQISLGIKQLTP 454
Query: 944 DRFRE-ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASV 1002
+ ++ A+ ++ K A KD G+ VN + + G+
Sbjct: 455 NPYQGIADEYKKGTVVKAVVTAIKDDGLEVLVN------------------DKAAGFIKK 496
Query: 1003 SDYNTQKFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKK 1058
SD + +K QK F Q + A V ++ S+ ++LL +KA I+E + + +
Sbjct: 497 SDLSDEKEEQKPEMFAVDQEIEAKVASIEKSTN--KILLSIKAYKIAERQKALKEYGSSD 554
Query: 1059 SSYDVGSLV 1067
++ ++G ++
Sbjct: 555 NTTNMGDIL 563
>sp|Q4ULF1|RS1_RICFE 30S ribosomal protein S1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rpsA PE=3 SV=1
Length = 568
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/363 (20%), Positives = 153/363 (42%), Gaps = 24/363 (6%)
Query: 479 GILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK 538
IL+ S E S +K GMV++G V + +GA + G V L L +S +
Sbjct: 185 AILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDL-GSVDGLLHLTDISWGRVNH 243
Query: 539 PGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKI 596
P + + ++ V+ K+KRI++ K+ AI + G +T
Sbjct: 244 PSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKK---MTGKVTNF 300
Query: 597 EKHGCFVRFYNGVQGFAPRSELG-LDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655
+G F+ +G++G SE+ L P +GQ V+ ++ R++LS
Sbjct: 301 ADYGVFIELRDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSI- 359
Query: 656 MKPTRVSEDDLVK------LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLE 709
+ E+ L+K +G+++ + +T + +V G I ++ +
Sbjct: 360 ---KQCQENPLIKFAENNPVGTIIKAPIRNITDFGI--FVALGNNMDGMIHEGDISWEDK 414
Query: 710 HATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGY 768
++KS K G E + ++L ++ E + L K N Q++ + ++V
Sbjct: 415 GTDLLKSY-KKGDEIECKVLAINIEKEQVSLGVKQLSPNPYQEI---SDEYKKGTIVKAL 470
Query: 769 VCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828
+ + + G V ++ GF R++ D + + + + + + + ++ + TGRI L
Sbjct: 471 ITEVKDDGLEVLLNNKVAGFIKRTELSDEKDEQKPEMFKIDEEIEAKVVSIEKSTGRILL 530
Query: 829 SLK 831
S+K
Sbjct: 531 SVK 533
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 132/284 (46%), Gaps = 34/284 (11%)
Query: 1249 SNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDE 1308
+ D M + I EG ++ G + I G + +G + G +H T++ V+ P +
Sbjct: 194 ARDEMLSKIKEGMVLEGTVKNITDY--GAFIDLG-SVDGLLHLTDISWGRVNHPSEVLEF 250
Query: 1309 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPN 1368
Q VK V++ + R SL G+ +S+ P + ++ E+
Sbjct: 251 NQKVKVMVIKFDEKTK---------RISL-GIKQLDSN--------PWEAIK--EEFPVG 290
Query: 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSV 1425
+ G V N G FI L L+ V S +S +++S P K IG+ V VL V
Sbjct: 291 KKMTGKVTNFADYGVFIELRDGLEGLVHSSEIS--WLKSNQNPRKTLTIGQEVEFVVLEV 348
Query: 1426 EPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGL 1485
+ RV +++K + NN VG I+ I+ + +G+F+ + N N+ G+
Sbjct: 349 DTEKHRVSLSIKQCQENPLIKFAENN----PVGTIIKAPIRNITDFGIFVALGN-NMDGM 403
Query: 1486 CHVSELS-EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
H ++S ED ++ Y+ G++++ K+L ++ EK ++SLG+K
Sbjct: 404 IHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGVK 447
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 130/603 (21%), Positives = 247/603 (40%), Gaps = 105/603 (17%)
Query: 494 SDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRV 553
S +K VVKG+VI + + IV G+K +P + + G +V E ++
Sbjct: 34 SHIKEKTVVKGQVIEIKNDMVIVDV--GLKNEGRIPKSEFLALPEVGDVVEVFIE---KI 88
Query: 554 LGVKSKRITVTHK--KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
G + I K K + +L I+ S E D I G + G F +GV
Sbjct: 89 EGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTI-FGRV-----KGGFTVDLSGVVA 142
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVSEDDLV 667
F P S++ + P +P+S+ ++ Q K + + +I SRR L R +
Sbjct: 143 FLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLDNIVVSRRAILEESRSEARDEMLSKI 202
Query: 668 KLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLAD----HLEHATVMKSVIKPGYE 723
K G ++ G V +T + + G G + HL D + H + + E
Sbjct: 203 KEGMVLEGTVKNITDYGAFIDL---GSVDGLL---HLTDISWGRVNHPSEV-------LE 249
Query: 724 FDQ-----LLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCF 778
F+Q ++ D ++ + L K N + + + + G V N + G F
Sbjct: 250 FNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEE---FPVGKKMTGKVTNFADYGVF 306
Query: 779 VRFLGRLTGFAPRSKAVDGQRADLS--KTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
+ L G S + +++ + KT +GQ V +L+V++E R++LS+KQ C
Sbjct: 307 IELRDGLEGLV-HSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQ-C-- 362
Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
QE+ L +K+ E +G++I+ + DFG+ V+
Sbjct: 363 -------QENPL-----------------IKFAENNPVGTIIKAPIRNITDFGIFVALGN 398
Query: 897 HSDVYGFITHHQLAG--------ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
+ D G I ++ + + G I+ +L + + V L +K + + ++E
Sbjct: 399 NMD--GMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVSLGVKQLSPNPYQE 456
Query: 949 ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
+ + V A++ VK++ L + L N G+ ++ + +
Sbjct: 457 ISDEYKK---------------GTIVKALITEVKDDGLEVLL--NNKVAGFIKRTELSDE 499
Query: 1009 KFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKA--ISETETSSSKRAKKKSSYDVG 1064
K QK F + + A V+++ S+ GR+LL +KA I+E + + + ++ ++G
Sbjct: 500 KDEQKPEMFKIDEEIEAKVVSIEKST--GRILLSVKAHKIAERQKALKEYGSSDNTTNMG 557
Query: 1065 SLV 1067
++
Sbjct: 558 DIL 560
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
+SR+ ++ E+ LS + G ++ G +K + YG FI + + + GL H++++S V++
Sbjct: 189 ESRSEARDEM--LSKIKEGMVLEGTVKNITDYGAFIDLGSVD--GLLHLTDISWGRVNHP 244
Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ +KVKV ++K D++ +RISLG+K
Sbjct: 245 SEVLEFNQKVKVMVIKFDEKTKRISLGIK 273
Score = 40.0 bits (92), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 119/277 (42%), Gaps = 32/277 (11%)
Query: 1163 IGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLS 1222
+G+++TG V + + + L+ + + ++ S Q ++ IG+ V VL
Sbjct: 289 VGKKMTGKVTNFADYGVFIELRDGLEGLVHSSEISWLKSN-QNPRKTLTIGQEVEFVVLE 347
Query: 1223 INKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIG 1282
++ EK + L ++ Q+ + + + +N G I+ I I G+ V +G
Sbjct: 348 VDTEKHRVSLSIKQCQE---NPLIKFAENN-----PVGTIIKAPIRNITDF--GIFVALG 397
Query: 1283 PHLYGRVHFTELK-NICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMS 1341
++ G +H ++ +D L Y +G ++CKVL I+ V L ++
Sbjct: 398 NNMDGMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKE---QVSLGVKQL----- 449
Query: 1342 STNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLS 1401
+P + E ++ IV+ + V G ++L+ K+ + + LS
Sbjct: 450 ------------SPNPYQEISDEYKKGTIVKALITEVKDDGLEVLLNNKVAGFIKRTELS 497
Query: 1402 DGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
D E + F I + + +V+S+E + R+ +++K
Sbjct: 498 DEKDEQKPEMFKIDEEIEAKVVSIEKSTGRILLSVKA 534
>sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1A PE=3 SV=1
Length = 328
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKV 1511
++ L V +V+G ++ ++ YG FI I + GL H+SE+S DH+D +++ +++KV
Sbjct: 190 MNGLEVAQVVVGSVRGIKPYGAFIDIGGVS--GLLHISEISHDHIDTPHSVFNVNDEIKV 247
Query: 1512 KILKVDKEKRRISLGMK 1528
I+ +D E+ RISL K
Sbjct: 248 MIIDLDAERGRISLSTK 264
>sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1
PE=1 SV=1
Length = 411
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
+ L +G +V G ++ ++ YG FI I N GL HVS++S D V +I T+ + G+ +KV
Sbjct: 256 AQLGIGSVVTGTVQSLKPYGAFIDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVM 313
Query: 1513 ILKVDKEKRRISLGMK 1528
IL D+E+ R+SL K
Sbjct: 314 ILSHDRERGRVSLSTK 329
>sp|Q48082|RS1_HAEIN 30S ribosomal protein S1 OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=rpsA PE=3 SV=1
Length = 549
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 15/167 (8%)
Query: 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLS 1424
N + G V N+T GCF+ + ++ V +S + + P K +G V VL
Sbjct: 277 NSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMD--WTNKNIHPSKVVSLGDTVEVMVLE 334
Query: 1425 VEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLV 1483
++ +R+ + LK + +Q ++ H GD V G+IK + +G+FI +E +
Sbjct: 335 IDEERRRISLGLKQCKANPWTQ-----FADTHNKGDKVTGKIKSITDFGIFIGLEG-GID 388
Query: 1484 GLCHVSELSEDHVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMK 1528
GL H+S++S + E + Y+ G++V +L VD K RISLG+K
Sbjct: 389 GLVHLSDISW-SISGEEAVRQYKKGDEVSAVVLAVDAVKERISLGIK 434
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 11/170 (6%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
+E+L V+G VKN+T G F+ L +D + +++++ V+ P + +G V +
Sbjct: 186 LENLVEGSEVKGVVKNLTEYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEVTVK 244
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENT 1480
VL + RV + LK Q ++ H V + G++ + YG F+ I +
Sbjct: 245 VLKFDKDRTRVSLGLKQ-----LGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFVEILD- 298
Query: 1481 NLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL HVSE+ + NI + G+ V+V +L++D+E+RRISLG+K
Sbjct: 299 GVEGLVHVSEMDWTN-KNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLK 347
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 499 GMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558
G VKG V + +GA V GGV L + M+ + P + VG E+ +VL
Sbjct: 192 GSEVKGVVKNLTEYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDK 250
Query: 559 KRITVTHK-KTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617
R V+ K L + A ++ +L G +T + +GCFV +GV+G SE
Sbjct: 251 DRTRVSLGLKQLGQDPWAAIAENHPVNSKLT--GKVTNLTDYGCFVEILDGVEGLVHVSE 308
Query: 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
+ + PS + +G V+ ++ RRI+L
Sbjct: 309 MDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGL 346
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 1409 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1468
E + +GK + +V+ ++ V V+ + SQ L NL G V G +K +
Sbjct: 143 EADHLLGKELEFKVIKLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNL 202
Query: 1469 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
YG F+ + + GL H+++++ V + I G++V VK+LK DK++ R+SLG+K
Sbjct: 203 TEYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLK 260
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 148/365 (40%), Gaps = 59/365 (16%)
Query: 600 GCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLS 653
G F NGV+ F P S + P E + +G+ ++ +++ +++ SRR +
Sbjct: 118 GGFTVELNGVRAFLPGSLVDTRPAREADHL--LGKELEFKVIKLDQKRNNVVVSRRAVIE 175
Query: 654 FMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHAT 712
R + + GS V GVV +T V + G G + +A ++H +
Sbjct: 176 SENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDL---GGVDGLLHITDMAWKRVKHPS 232
Query: 713 VMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVC 770
++ G E ++L D + + + L K Q + + HP NS + G V
Sbjct: 233 ---EIVNVGDEVTVKVLKFDKDRTRVSLGLK----QLGQDPWAAIAENHPVNSKLTGKVT 285
Query: 771 NIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITL 828
N+ + GCFV L + G S+ +D ++ SK +G +V +L+++ E RI+L
Sbjct: 286 NLTDYGCFVEILDGVEGLVHVSE-MDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISL 344
Query: 829 SLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 888
LKQ C ++ F + HN G + GK+ DF
Sbjct: 345 GLKQ-CKANPWTQF---------------ADTHNK-----------GDKVTGKIKSITDF 377
Query: 889 GVVVSFE-------EHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTV 941
G+ + E SD+ I+ + A + G + A +L V + + L +K +
Sbjct: 378 GIFIGLEGGIDGLVHLSDISWSISGEE-AVRQYKKGDEVSAVVLAVDAVKERISLGIKQL 436
Query: 942 FIDRF 946
D F
Sbjct: 437 EEDPF 441
>sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1
PE=3 SV=2
Length = 263
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 68/113 (60%), Gaps = 9/113 (7%)
Query: 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI 1475
K + ++L+VE S + ++ + + AS SNL VG+I+ G I ++ YGLFI
Sbjct: 157 KFIKLKLLNVEEKSNNLILSHRRALISQAS-------SNLIVGNIIEGIINQITPYGLFI 209
Query: 1476 TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ NL GL H+SE++ +++ I + ++ G+ +K I+ VDK++ R+SL MK
Sbjct: 210 KV--GNLKGLVHISEINIKNLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMK 260
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 23/155 (14%)
Query: 689 VIAKGYSKGT-----------IPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNL 737
V+ KG++KG +P HL + + IK +LL ++ +S+NL
Sbjct: 119 VMIKGFNKGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKL-----KLLNVEEKSNNL 173
Query: 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG 797
+LS + +LI+ A +S++ +++ G + I G F++ +G L G S+
Sbjct: 174 ILSHRRALISQA------SSNLIVGNIIEGIINQITPYGLFIK-VGNLKGLVHISEINIK 226
Query: 798 QRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832
+S + +G ++++ I+ V+ + GR++LS+K
Sbjct: 227 NLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMKH 261
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 1051 SSKRA---KKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENL 1107
S +RA + S+ VG++++ I +I P L +K G G +HI+E+N +E +
Sbjct: 176 SHRRALISQASSNLIVGNIIEGIINQITPYGLFIKVG-NLKGLVHISEINIKN---LEQI 231
Query: 1108 FSNFKIGQTVTARII 1122
S FKIG T+ A II
Sbjct: 232 SSQFKIGDTIKAVII 246
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/198 (18%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
D+ G +V G + + + G +V + A P+ +S + + + F +L
Sbjct: 23 DLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNNFTSLNINDTREFFLL 82
Query: 555 --GVKSKRITVTHKKT-LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQG 611
++SK++ ++ ++ +++ I AE + + + I K G + G+ G
Sbjct: 83 DYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDS---LLNVMIKGFNKGGMIINL-EGISG 138
Query: 612 FAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGS 671
F P S LG + S ++ + +K ++++ S + LS + +L+ +G+
Sbjct: 139 FVPNSHLG---NFQKSEQFN-NKFIKLKLLNVEEKSNNLILSHRRALISQASSNLI-VGN 193
Query: 672 LVSGVVDVVTPNAVVVYV 689
++ G+++ +TP + + V
Sbjct: 194 IIEGIINQITPYGLFIKV 211
>sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1
Length = 557
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 173/393 (44%), Gaps = 56/393 (14%)
Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
G V G V + + A + + + L I D A++ PSE+ ++G +T
Sbjct: 192 GMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEITVK 244
Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
VL ++E+ + L L+ + D V I+ EG + GR++ + G V
Sbjct: 245 VLKFDRERTRVSLGLKQLGE---DPWVAIAK-----RYPEGTKLTGRVTNLTDY--GCFV 294
Query: 1280 QIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
+I + G VH +E+ KNI P + G V+ VL+I R R
Sbjct: 295 EIEEGVEGLVHVSEMDWTNKNIH---PSKVVNVGDVVEVMVLDIDEERR---------RI 342
Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
SL G+ ++ +T K V+G +K++T G FI L +D V
Sbjct: 343 SL-GLKQCKANPWQQFAETHNKGDR----------VEGKIKSITDFGIFIGLDGGIDGLV 391
Query: 1396 LLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
LS++S E +E+ G +A VL V+ +R+ + +K ++ NN
Sbjct: 392 HLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQ-----LAEDPFNNWVA 446
Query: 1455 LHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
L+ G IV G++ V++ G + + + + G SE S D V++ + G++V+ K
Sbjct: 447 LNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 505
Query: 1514 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
VD++ R ISL +++ ++ D + +++E
Sbjct: 506 TGVDRKNRAISLSVRAKDEADEKDAIATVNKQE 538
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 245 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 299
Query: 1482 LVGLCHVSELSEDHVDNI--ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
++E E EF + KL R V +S+R + + S R L NL G V G
Sbjct: 146 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESENSAERDQL------LENLQEGMEVKG 197
Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255
Query: 1524 SLGMK 1528
SLG+K
Sbjct: 256 SLGLK 260
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 594
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 655 MMK 657
K
Sbjct: 520 RAK 522
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 186/473 (39%), Gaps = 69/473 (14%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
S + + P +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRP--VRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 900 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA
PE=1 SV=1
Length = 557
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 173/393 (44%), Gaps = 56/393 (14%)
Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
G V G V + + A + + + L I D A++ PSE+ ++G +T
Sbjct: 192 GMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEITVK 244
Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
VL ++E+ + L L+ + D V I+ EG + GR++ + G V
Sbjct: 245 VLKFDRERTRVSLGLKQLGE---DPWVAIAK-----RYPEGTKLTGRVTNLTDY--GCFV 294
Query: 1280 QIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
+I + G VH +E+ KNI P + G V+ VL+I R R
Sbjct: 295 EIEEGVEGLVHVSEMDWTNKNIH---PSKVVNVGDVVEVMVLDIDEERR---------RI 342
Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
SL G+ ++ +T K V+G +K++T G FI L +D V
Sbjct: 343 SL-GLKQCKANPWQQFAETHNKGDR----------VEGKIKSITDFGIFIGLDGGIDGLV 391
Query: 1396 LLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
LS++S E +E+ G +A VL V+ +R+ + +K ++ NN
Sbjct: 392 HLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQ-----LAEDPFNNWVA 446
Query: 1455 LHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
L+ G IV G++ V++ G + + + + G SE S D V++ + G++V+ K
Sbjct: 447 LNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 505
Query: 1514 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
VD++ R ISL +++ ++ D + +++E
Sbjct: 506 TGVDRKNRAISLSVRAKDEADEKDAIATVNKQE 538
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 245 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 299
Query: 1482 LVGLCHVSELSEDHVDNI--ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
++E E EF + KL R V +S+R + + S R L NL G V G
Sbjct: 146 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESENSAERDQL------LENLQEGMEVKG 197
Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255
Query: 1524 SLGMK 1528
SLG+K
Sbjct: 256 SLGLK 260
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 594
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 655 MMK 657
K
Sbjct: 520 RAK 522
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 186/473 (39%), Gaps = 69/473 (14%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
S + + P +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRP--VRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 900 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=rpsA PE=3 SV=1
Length = 557
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 173/393 (44%), Gaps = 56/393 (14%)
Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
G V G V + + A + + + L I D A++ PSE+ ++G +T
Sbjct: 192 GMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEITVK 244
Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
VL ++E+ + L L+ + D V I+ EG + GR++ + G V
Sbjct: 245 VLKFDRERTRVSLGLKQLGE---DPWVAIAK-----RYPEGTKLTGRVTNLTDY--GCFV 294
Query: 1280 QIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
+I + G VH +E+ KNI P + G V+ VL+I R R
Sbjct: 295 EIEEGVEGLVHVSEMDWTNKNIH---PSKVVNVGDVVEVMVLDIDEERR---------RI 342
Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
SL G+ ++ +T K V+G +K++T G FI L +D V
Sbjct: 343 SL-GLKQCKANPWQQFAETHNKGDR----------VEGKIKSITDFGIFIGLDGGIDGLV 391
Query: 1396 LLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
LS++S E +E+ G +A VL V+ +R+ + +K ++ NN
Sbjct: 392 HLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQ-----LAEDPFNNWVA 446
Query: 1455 LHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
L+ G IV G++ V++ G + + + + G SE S D V++ + G++V+ K
Sbjct: 447 LNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 505
Query: 1514 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
VD++ R ISL +++ ++ D + +++E
Sbjct: 506 TGVDRKNRAISLSVRAKDEADEKDAIATVNKQE 538
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 245 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 299
Query: 1482 LVGLCHVSELSEDHVDNI--ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
++E E EF + KL R V +S+R + + S R L NL G V G
Sbjct: 146 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESENSAERDQL------LENLQEGMEVKG 197
Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255
Query: 1524 SLGMK 1528
SLG+K
Sbjct: 256 SLGLK 260
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 594
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 655 MMK 657
K
Sbjct: 520 RAK 522
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 186/473 (39%), Gaps = 69/473 (14%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
S + + P +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRP--VRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 900 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3
SV=1
Length = 557
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 173/393 (44%), Gaps = 56/393 (14%)
Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
G V G V + + A + + + L I D A++ PSE+ ++G +T
Sbjct: 192 GMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEITVK 244
Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
VL ++E+ + L L+ + D V I+ EG + GR++ + G V
Sbjct: 245 VLKFDRERTRVSLGLKQLGE---DPWVAIAK-----RYPEGTKLTGRVTNLTDY--GCFV 294
Query: 1280 QIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
+I + G VH +E+ KNI P + G V+ VL+I R R
Sbjct: 295 EIEEGVEGLVHVSEMDWTNKNIH---PSKVVNVGDVVEVMVLDIDEERR---------RI 342
Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
SL G+ ++ +T K V+G +K++T G FI L +D V
Sbjct: 343 SL-GLKQCKANPWQQFAETHNKGDR----------VEGKIKSITDFGIFIGLDGGIDGLV 391
Query: 1396 LLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
LS++S E +E+ G +A VL V+ +R+ + +K ++ NN
Sbjct: 392 HLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQ-----LAEDPFNNWVA 446
Query: 1455 LHV-GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1513
L+ G IV G++ V++ G + + + + G SE S D V++ + G++V+ K
Sbjct: 447 LNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 505
Query: 1514 LKVDKEKRRISLGMKSSYFKNDADNLQMSSEEE 1546
VD++ R ISL +++ ++ D + +++E
Sbjct: 506 TGVDRKNRAISLSVRAKDEADEKDAIATVNKQE 538
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 244
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 245 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 299
Query: 1482 LVGLCHVSELSEDHVDNI--ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 300 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
++E E EF + KL R V +S+R + + S R L NL G V G
Sbjct: 146 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESENSAERDQL------LENLQEGMEVKG 197
Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255
Query: 1524 SLGMK 1528
SLG+K
Sbjct: 256 SLGLK 260
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 133/357 (37%), Gaps = 45/357 (12%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 186 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 291
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
+ G V + + T + N V +L +D R + L L
Sbjct: 292 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
NP+ HN+ K+ I D + +D G+ L+ + +VA
Sbjct: 352 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS---------WNVAG 402
Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
EE + KK E + V +++ R L L F V + K G +V GKV
Sbjct: 403 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALN---KKGAIVTGKVT 459
Query: 508 AVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVT 564
AVD+ GA V+ GV+ S + VG E+ + GV K ++
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAIS 516
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
KA+ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 350 KANPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLDGGIDGLV---HLSDISWNVAGE 403
Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 594
+++K G E+ VL V ++R + +L +LA +++ + I G +T
Sbjct: 404 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNWVALNKKGAIVTGKVT 459
Query: 595 KIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
++ G V +GV+G+ SE D + + + VG V+ + +R I+LS
Sbjct: 460 AVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 655 MMK 657
K
Sbjct: 520 RAK 522
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 103/473 (21%), Positives = 186/473 (39%), Gaps = 69/473 (14%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+ +PG +V+G V+A+D +V G+K+ +P +F+ + + +VG E+ +
Sbjct: 17 ETRPGSIVRGVVVAIDK--DVVLVDAGLKSESAIP-AEQFKNAQGELEIQVGDEVDVALD 73
Query: 555 GVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAP 614
V+ + K A ++ D G I K G V NG++ F P
Sbjct: 74 AVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLP 132
Query: 615 RSELGLDPGCEPSSMYHVGQVVKCRIM------SSIPASRRINLSFMMKPTRVSEDDLVK 668
S + + P +++ G+ ++ +++ +++ SRR + R + ++
Sbjct: 133 GSLVDVRP--VRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQ 190
Query: 669 LGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYEFD-Q 726
G V G+V +T V + G G + +A ++H + ++ G E +
Sbjct: 191 EGMEVKGIVKNLTDYGAFVDL---GGVDGLLHITDMAWKRVKHPS---EIVNVGDEITVK 244
Query: 727 LLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGCFVRF 781
+L D E + + L K QL D A + + G V N+ + GCFV
Sbjct: 245 VLKFDRERTRVSLGLK--------QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEI 296
Query: 782 LGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTD 839
+ G S+ +D ++ SK VG V +LD++ E RI+L LKQ C ++
Sbjct: 297 EEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ-CKANPW 354
Query: 840 ASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSD 899
F + H G +EGK+ DFG+ + + D
Sbjct: 355 QQFAETHNK--------------------------GDRVEGKIKSITDFGIFIGLDGGID 388
Query: 900 --VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRF 946
V+ +AG + G I A +L V + L +K + D F
Sbjct: 389 GLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPF 441
>sp|Q6NDP1|RS1_RHOPA 30S ribosomal protein S1 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rpsA PE=1 SV=1
Length = 565
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 7/172 (4%)
Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
E +++L ++ G VKN+T G F+ L +D + +++++ V P + IG+ V
Sbjct: 193 ELVQNLEEGQVIDGVVKNITDYGAFVDLG-GIDGLLHVTDIAWRRVNHPTEVLTIGQTVK 251
Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
+++ + + R+ + +K E N G++ + YG F+ +E
Sbjct: 252 VKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNAR----FTGRVTNITDYGAFVELE- 306
Query: 1480 TNLVGLCHVSELSEDHVD-NIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
+ GL HVSE+S + + I ++V+V++L+VD KRRISLG+K +
Sbjct: 307 PGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQT 358
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 1421 RVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480
++L ++ + V+ +T T ++ + NL G ++ G +K + YG F+ +
Sbjct: 164 QILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDLGGI 223
Query: 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL HV++++ V++ + G+ VKVKI+K++ E RISLGMK
Sbjct: 224 D--GLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMK 269
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 134/305 (43%), Gaps = 49/305 (16%)
Query: 1265 GRISKILSGVGGLVVQIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFVKCKVLEIS 1320
GR++ I G V++ P + G +H +E+ KN+ +S E V+ +VLE+
Sbjct: 291 GRVTNITDY--GAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQE---VEVQVLEVD 345
Query: 1321 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS 1380
R + L L+ ++ P + +E V+G VKN T
Sbjct: 346 SVKR---RISLGLKQTMR---------------NPWEVF--VEKHPVGSTVEGEVKNKTE 385
Query: 1381 KGCFIMLSRKLDAKVLLSNLSDGYVESPE--KEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438
G F+ L +D V LS+L D + + F G +V VL V+ +R+ + +K
Sbjct: 386 FGLFLGLDGDVDGMVHLSDL-DWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERISLGVKQ 444
Query: 1439 SDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN 1498
+ ++ ++ G +V ++ V+ G+ + I T+ SEL+ D D
Sbjct: 445 LEGDPFAEP-----GDVKKGAVVTCEVLDVKESGIDVQIVGTDFNTFIKRSELARDRNDQ 499
Query: 1499 IETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYN 1558
+ GEKV ++++ DK+ R++ + +K+ L+++ E+ EAI + GS +
Sbjct: 500 RSDRFAVGEKVDARVIQFDKKARKVQVSIKA---------LEVAEEK---EAIAQYGSSD 547
Query: 1559 RSSLL 1563
+ L
Sbjct: 548 SGATL 552
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/356 (21%), Positives = 147/356 (41%), Gaps = 42/356 (11%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+++ G V+ G V + +GA V GG+ L + ++ + P + +G + +++
Sbjct: 197 NLEEGQVIDGVVKNITDYGAFVDL-GGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKII 255
Query: 555 GV--KSKRITVTHKKTLVKSKLAILSSY---AEATDRLITHGWITKIEKHGCFVRFYNGV 609
+ ++ RI++ K+ L I + Y A T R +T I +G FV G+
Sbjct: 256 KINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGR------VTNITDYGAFVELEPGI 309
Query: 610 QGFAPRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF---MMKPTRVSEDD 665
+G SE+ P + Q V+ +++ RRI+L M P V +
Sbjct: 310 EGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEK 369
Query: 666 LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTI---------PTEHLADHLEHATVMKS 716
+GS V G +V +++ G G + P E + D+ + ++K+
Sbjct: 370 H-PVGSTVEG--EVKNKTEFGLFLGLDGDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKA 426
Query: 717 VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETG 776
V+ L +D E + L K L P D + +VV V ++ E+G
Sbjct: 427 VV---------LDVDVEKERISLGVK-QLEGDPFAEPGD---VKKGAVVTCEVLDVKESG 473
Query: 777 CFVRFLGR-LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
V+ +G F RS+ + S + VG+ V + ++ + + ++ +S+K
Sbjct: 474 IDVQIVGTDFNTFIKRSELARDRNDQRSDRFAVGEKVDARVIQFDKKARKVQVSIK 529
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 103/485 (21%), Positives = 188/485 (38%), Gaps = 81/485 (16%)
Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGK--KFKVG-- 546
F +++ V+KGKV+A++ A++ + PL E PG+ + KVG
Sbjct: 22 FAGGNLQESSVIKGKVVAIEKDMAVIDVGLKTEGRVPLR-----EFAGPGRDNEIKVGDT 76
Query: 547 AELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFY 606
E+ + ++ K + L + +++ + + G F
Sbjct: 77 VEVFLDRIENALGEAVLSRDKARREESWGKLEKAFQNNEKVFG---VIFNQVKGGFTVDL 133
Query: 607 NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC----RIMSSIPASRRINLSFMMKPTRVS 662
+G F PRS++ + P + + + + Q + R +I SRR L R
Sbjct: 134 DGAVAFLPRSQVDIRPIRDVAPLMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQE 193
Query: 663 EDDLVKLGSLVSGVVDVVTPNAVVV---------YVIAKGYSKGTIPTEHLADHLEHATV 713
++ G ++ GVV +T V +V + + PTE L TV
Sbjct: 194 LVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLT---IGQTV 250
Query: 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHP-NSVVHGYVCNI 772
+IK +++E+ + L K L + Q + + +P N+ G V NI
Sbjct: 251 KVKIIK----------INHETHRISLGMKQLLDDPWQGIEAK----YPLNARFTGRVTNI 296
Query: 773 IETGCFVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831
+ G FV + G S+ + + K Q V +L+V+S RI+L LK
Sbjct: 297 TDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLK 356
Query: 832 QSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV 891
Q+ + + F+++H +GS +EG+V +FG+
Sbjct: 357 QTMRNPWEV-FVEKH--------------------------PVGSTVEGEVKNKTEFGLF 389
Query: 892 VSFEEHSDVYGFI----THHQLAGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFI 943
+ + DV G + +L G V + G +++A +LDV + + L +K +
Sbjct: 390 LGLD--GDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERISLGVKQLEG 447
Query: 944 DRFRE 948
D F E
Sbjct: 448 DPFAE 452
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 95/446 (21%), Positives = 171/446 (38%), Gaps = 83/446 (18%)
Query: 726 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
Q+L +D N+++S + L + A+Q ++ V+ G V NI + G FV LG
Sbjct: 164 QILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVD-LGG 222
Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
+ G + + ++ +GQ+V+ I+ +N ET RI+L +KQ
Sbjct: 223 IDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQ------------ 270
Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE------HS 898
L G E K + + + G+V D+G V E H
Sbjct: 271 -----------LLDDPWQGIEAK----YPLNARFTGRVTNITDYGAFVELEPGIEGLIHV 315
Query: 899 DVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKT-------VFIDRFREANS 951
+ + G V + ++ +L+V +R + L LK VF+++
Sbjct: 316 SEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKHP---- 371
Query: 952 NRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFP 1011
V TV V+ E L L L G +SD + K P
Sbjct: 372 ------------------VGSTVEGEVKNKTEFGLFLGLD--GDVDGMVHLSDLD-WKLP 410
Query: 1012 QKQ----FLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSLV 1067
+Q F G V A V+ + R+ L +K + + KK G++V
Sbjct: 411 GEQVIDNFKKGDMVKAVVLDVDVEKE--RISLGVKQLEGDPFAEPGDVKK------GAVV 462
Query: 1068 QAEITEIKPLELRLKF-GIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 1126
E+ ++K + ++ G F+ I +E+ D+++ + F+ +G+ V AR+I
Sbjct: 463 TCEVLDVKESGIDVQIVGTDFNTFIKRSELARDRNDQRSDRFA---VGEKVDARVIQFDK 519
Query: 1127 KPDMKKSFLWELSIKPSMLTVSEIGS 1152
K + + L + +++ GS
Sbjct: 520 KARKVQVSIKALEVAEEKEAIAQYGS 545
>sp|P51345|RR1_PORPU 30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1
PE=3 SV=1
Length = 263
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512
SNL VG+I+ G I ++ YGLFI + NL GL H+SE++ V+ I + ++ G+ +K
Sbjct: 187 SNLIVGNIIEGVINQITPYGLFI--KAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAV 244
Query: 1513 ILKVDKEKRRISLGMK 1528
I+ VDK++ R+SL MK
Sbjct: 245 IIHVDKKQGRLSLSMK 260
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 697 GTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSDA 756
G +P HL + ++ + IK +LL ++ +S+NL+LS + +LI A +
Sbjct: 138 GFVPNSHLNNFSKNTSSTNKFIKL-----KLLNVEEKSNNLILSHRRALIAQA------S 186
Query: 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816
S++ +++ G + I G F++ G L G S+ Q + + +G ++++ I
Sbjct: 187 SNLIVGNIIEGVINQITPYGLFIK-AGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVI 245
Query: 817 LDVNSETGRITLSLKQ 832
+ V+ + GR++LS+K
Sbjct: 246 IHVDKKQGRLSLSMKH 261
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 1055 AKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 1114
A+ S+ VG++++ I +I P L +K G G +HI+E+N + VE + S FKIG
Sbjct: 183 AQASSNLIVGNIIEGVINQITPYGLFIKAG-NLKGLVHISEINVKQ---VERIPSQFKIG 238
Query: 1115 QTVTARII 1122
T+ A II
Sbjct: 239 DTIKAVII 246
>sp|P14128|RS1_PROSP 30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3
SV=1
Length = 378
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 15/162 (9%)
Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1429
G V N+T GCF+ + ++ V +S + + P K +G +V VL ++
Sbjct: 177 GRVTNLTDYGCFVEIEEGVEGLVHVSEMD--WTNKNIHPSKVVNVGDVVEVMVLDIDEER 234
Query: 1430 KRVEVTLKTSDSRTASQ-SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
+R+ + LK S Q +E +N GD V G+IK + +G+FI +E + GL H+
Sbjct: 235 RRISLGLKQCKSNPWQQFAETHNK-----GDRVEGKIKSITDFGIFIGLEG-GIDGLVHL 288
Query: 1489 SELSEDHVDNIETI--YRAGEKVKVKILKVDKEKRRISLGMK 1528
S++S + V E + Y+ G+++ +L+VD E+ RISLG+K
Sbjct: 289 SDISWN-VAGEEAVREYKKGDEIAAVVLQVDAERERISLGVK 329
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGR 1421
+E+L M V+G VKN+T G F+ L +D + +++++ V+ P + +G + +
Sbjct: 81 LENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEITVK 139
Query: 1422 VLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTN 1481
VL + RV + LK + + G + G++ + YG F+ IE
Sbjct: 140 VLKFDRERTRVSLGLK----QLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-G 194
Query: 1482 LVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMK 1528
+ GL HVSE+ + NI + G+ V+V +L +D+E+RRISLG+K
Sbjct: 195 VEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 242
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 1404 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIG 1463
++E E EF + KL R V +S+R + ++S R L NL G V G
Sbjct: 41 HLEGKELEFKVIKLDQKRNNVV--VSRRAVIESESSAERDQL------LENLQEGMEVKG 92
Query: 1464 QIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523
+K + YG F+ + + GL H+++++ V + I G+++ VK+LK D+E+ R+
Sbjct: 93 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 150
Query: 1524 SLGMK 1528
SLG+K
Sbjct: 151 SLGLK 155
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 7/163 (4%)
Query: 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVL 554
+++ GM VKG V + +GA V GGV L + M+ + P + VG E+ +VL
Sbjct: 83 NLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVL 141
Query: 555 GVKSKR--ITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGF 612
+R +++ K+ +AI Y E T G +T + +GCFV GV+G
Sbjct: 142 KFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTK---LTGRVTNLTDYGCFVEIEEGVEGL 198
Query: 613 APRSELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654
SE+ + PS + +VG VV+ ++ RRI+L
Sbjct: 199 VHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGL 241
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 121/317 (38%), Gaps = 45/317 (14%)
Query: 227 LETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLA----ENSGIDVKPGLLLQG 282
LE +QEGM + VK++ D+G + G G L ++A ++ V G +
Sbjct: 81 LENLQEGMEVKGIVKNLTDYGAFVDLG--GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 138
Query: 283 VVRSIDRTRKVV-----YLSSDPDTVSKCVTKDLKGISIDLLVP-GMMVSTRVQSILENG 336
V DR R V L DP ++I P G ++ RV ++ + G
Sbjct: 139 KVLKFDRERTRVSLGLKQLGEDP------------WVAIAKRYPEGTKLTGRVTNLTDYG 186
Query: 337 VMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL----- 391
+ G V + + T + N V +L +D R + L L
Sbjct: 187 CFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 246
Query: 392 NPYL----LHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAE 447
NP+ HN+ K+ I D + ++ G+ L+ + +VA
Sbjct: 247 NPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGGIDGLVHLSDIS---------WNVAG 297
Query: 448 EEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVI 507
EE + KK E + V +++ R L L F + + K G +V GKV
Sbjct: 298 EEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL---AATKKGAIVTGKVT 354
Query: 508 AVDSFGAIVQFPGGVKA 524
AVD+ GA V+ GV+
Sbjct: 355 AVDAKGATVELTLGVEG 371
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 136/323 (42%), Gaps = 53/323 (16%)
Query: 1164 GQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYE----PSELQEFQRRFHIGKAVTGH 1219
G V G V + + A + + + L I D A++ PSE+ ++G +T
Sbjct: 87 GMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEI------VNVGDEITVK 139
Query: 1220 VLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVV 1279
VL ++E+ + L L+ + D V I+ EG + GR++ + G V
Sbjct: 140 VLKFDRERTRVSLGLKQLGE---DPWVAIAKR-----YPEGTKLTGRVTNLTDY--GCFV 189
Query: 1280 QIGPHLYGRVHFTEL----KNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335
+I + G VH +E+ KNI P + G V+ VL+I R R
Sbjct: 190 EIEEGVEGLVHVSEMDWTNKNI---HPSKVVNVGDVVEVMVLDIDEERR---------RI 237
Query: 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKV 1395
SL G+ S+ +T K V+G +K++T G FI L +D V
Sbjct: 238 SL-GLKQCKSNPWQQFAETHNKGDR----------VEGKIKSITDFGIFIGLEGGIDGLV 286
Query: 1396 LLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSN 1454
LS++S E +E+ G +A VL V+ +R+ + +K + A N L+
Sbjct: 287 HLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVK----QLAEDPFNNYLAA 342
Query: 1455 LHVGDIVIGQIKRVESYGLFITI 1477
G IV G++ V++ G + +
Sbjct: 343 TKKGAIVTGKVTAVDAKGATVEL 365
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 17/143 (11%)
Query: 482 KASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPG- 540
K++ ++ TH+ G V+GK+ ++ FG + GG+ L H+S+ G
Sbjct: 245 KSNPWQQFAETHN---KGDRVEGKIKSITDFGIFIGLEGGIDGLV---HLSDISWNVAGE 298
Query: 541 ---KKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLA--ILSSYAEATDR-LITHGWIT 594
+++K G E+ VL V ++R + +L +LA ++Y AT + I G +T
Sbjct: 299 EAVREYKKGDEIAAVVLQVDAER----ERISLGVKQLAEDPFNNYLAATKKGAIVTGKVT 354
Query: 595 KIEKHGCFVRFYNGVQGFAPRSE 617
++ G V GV+G+ SE
Sbjct: 355 AVDAKGATVELTLGVEGYLRASE 377
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 36/188 (19%)
Query: 767 GYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL--SKTYYVGQSVRSNILDVNSETG 824
G V N+ + GCFV + G S+ +D ++ SK VG V +LD++ E
Sbjct: 177 GRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR 235
Query: 825 RITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHE 884
RI+L LKQ C S+ F + H G +EGK+
Sbjct: 236 RISLGLKQ-CKSNPWQQFAETHNK--------------------------GDRVEGKIKS 268
Query: 885 SNDFGVVVSFEEHSD--VYGFITHHQLAGATV----ESGSVIQAAILDVAKAERLVDLSL 938
DFG+ + E D V+ +AG + G I A +L V + L +
Sbjct: 269 ITDFGIFIGLEGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGV 328
Query: 939 KTVFIDRF 946
K + D F
Sbjct: 329 KQLAEDPF 336
>sp|Q527H0|CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1
Length = 691
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 129/300 (43%), Gaps = 56/300 (18%)
Query: 1645 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1704
++ A+ L +K+ R+ FER + N +WI+Y+ L ++ AR++ +RA+
Sbjct: 76 LQYAQWELEQKEYARSRSVFERALNLHANKVTLWIRYVEAELKSRNINFARNLLDRAVTH 135
Query: 1705 INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQ 1764
+ + +W Y +E GN P V +VF+R +++ + A + L +R +
Sbjct: 136 LPRVD-----KLWYKYVWVEEMLGNIP--GVRQVFERWMEWQPDEAAWSAFIKLEQRYGE 188
Query: 1765 NKLADELL--YKMI----------KKFKHSC-------KVWLRRVQRLLKQQQEGVQ--- 1802
A E+ + M+ KF+ +V+ R ++ L K E V+
Sbjct: 189 YDRAREIFTRFTMVHPEPRNWIKWSKFEEEYGTSDRVREVFERAIEELSKYGDEFVEERL 248
Query: 1803 ------------------AVVQRALLSLPRHKHIKFISQTAILEFKNG--------VADR 1836
A+ + L +LPR K + + E + G V +
Sbjct: 249 FIAYARYEAKLHDLDRARAIYKFGLENLPRSKAMLLHKEYTTFEKQYGDREGVEDVVLSK 308
Query: 1837 GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896
R +E ++ E PK D+W Y E GD+D R ++E+AI+ +PP + K +++Y+
Sbjct: 309 RRRHYEDLVRENPKNYDVWFDYARLEEASGDIDRTREVYEKAIA-QVPPTQAKRHWRRYI 367
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 1823 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882
Q A E + R RS+FE L+ + + LW Y++ E++ +++ R L +RA++
Sbjct: 77 QYAQWELEQKEYARSRSVFERALNLHANKVTLWIRYVEAELKSRNINFARNLLDRAVT-H 135
Query: 1883 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918
LP ++ L+ KY+ E+ +G + V ++ ME+
Sbjct: 136 LP--RVDKLWYKYVWVEEMLGNIPGVRQVFERWMEW 169
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 98/241 (40%), Gaps = 28/241 (11%)
Query: 1664 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ----TINIREENEKLNIWVA 1719
+E LVR +P + VW Y + D+++ R + E+A+ T R + +W+
Sbjct: 313 YEDLVRENPKNYDVWFDYARLEEASGDIDRTREVYEKAIAQVPPTQAKRHWRRYIYLWI- 371
Query: 1720 YFNL--ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYE---RTEQNKLADELLYK 1774
+F L E E NP E +V+ L+ + A + +++ Q LA K
Sbjct: 372 FFALWEETEAKNP--ERARQVYDTCLKLIPHRTFTFAKVWMHKAHFEIRQGDLA--AARK 427
Query: 1775 MIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKF-----ISQTAILEF 1829
+ + C RL K E Q + + + KHI + + E
Sbjct: 428 TLGRAIGMCPK-----DRLFKGYIEMEQKLYEFGRCRILYEKHIAYNPANCSTWVKWAEL 482
Query: 1830 KNGV--ADRGRSMFE-GILSEYPKRTDL-WSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1885
+ G+ DR R++ + GI ++ W Y+D E G+ D R L+ER + + P
Sbjct: 483 ERGLDDLDRARAILDMGIAQPVLDMPEVVWKSYIDFEEEEGEYDKTRSLYERLLDKADHP 542
Query: 1886 K 1886
K
Sbjct: 543 K 543
>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti (strain 1021) GN=rpsA
PE=3 SV=2
Length = 568
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI 1499
+SR +SEI + NL G +V G +K + YG F+ + + GL HV++++ V++
Sbjct: 182 ESRAEQRSEI--VQNLEEGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHP 237
Query: 1500 ETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
I G++VKV+I+++++E RISLGMK
Sbjct: 238 SEILNIGQQVKVQIIRINQETHRISLGMK 266
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 9/173 (5%)
Query: 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVA 1419
E +++L +V+G VKN+T G F+ L +D + +++++ V P + IG+ V
Sbjct: 190 EIVQNLEEGQVVEGVVKNITDYGAFVDLG-GIDGLLHVTDMAWRRVNHPSEILNIGQQVK 248
Query: 1420 GRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479
+++ + + R+ + +K +S + VG + G + + YG F+ +E
Sbjct: 249 VQIIRINQETHRISLGMKQLESDPWDGIG----AKYPVGKKISGTVTNITDYGAFVELE- 303
Query: 1480 TNLVGLCHVSELSEDHVDNIE--TIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530
+ GL H+SE+S N+ I ++V V +L+VD KRRISLG+K +
Sbjct: 304 PGIEGLIHISEMSWTK-KNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQT 355
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 127/281 (45%), Gaps = 44/281 (15%)
Query: 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKV 1316
+ EG +V G + I G V +G + G +H T++ V+ P + GQ VK ++
Sbjct: 195 LEEGQVVEGVVKNITDY--GAFVDLG-GIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQI 251
Query: 1317 LEISRTVRGTFHVELSLRS----SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQ 1372
+ I++ T + L ++ DG+ + GK +
Sbjct: 252 IRINQE---THRISLGMKQLESDPWDGIGAKYPV---------GKK------------IS 287
Query: 1373 GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES---PEKEFPIGKLVAGRVLSVEPLS 1429
G V N+T G F+ L ++ + +S +S + + P K + V VL V+P
Sbjct: 288 GTVTNITDYGAFVELEPGIEGLIHISEMS--WTKKNVHPGKILSTSQEVDVVVLEVDPTK 345
Query: 1430 KRVEVTLKTSDSRTASQSEINNLSNLH-VGDIVIGQIKRVESYGLFITIENTNLVGLCHV 1488
+R+ + LK + ++ ++ H G V G++K +GLFI ++ ++ G+ H+
Sbjct: 346 RRISLGLKQT-----LENPWQAFAHSHPAGTEVEGEVKNKTEFGLFIGLDG-DVDGMVHL 399
Query: 1489 SELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528
S+L + + + + G+ V+ +L VD +K RISLG+K
Sbjct: 400 SDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDKERISLGIK 440
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 29/171 (16%)
Query: 726 QLLVLDNESSNLLLSAKYSLINS-AQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784
++L +D N+++S + L S A+Q ++ VV G V NI + G FV LG
Sbjct: 161 EILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVD-LGG 219
Query: 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQ 844
+ G + + S+ +GQ V+ I+ +N ET RI+L +KQ
Sbjct: 220 IDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQ------------ 267
Query: 845 EHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFE 895
L+S +G K + +G I G V D+G V E
Sbjct: 268 -----------LESDPWDGIGAK----YPVGKKISGTVTNITDYGAFVELE 303
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 134/605 (22%), Positives = 229/605 (37%), Gaps = 86/605 (14%)
Query: 491 FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550
F +D+ G V KG V A++ AIV V+ PL EF KVG E+
Sbjct: 19 FAKTDLAEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPL---KEFGAKAKDGTLKVGDEVE 75
Query: 551 FRVLGVKSK--RITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNG 608
V +++ ++ +K + L EA +R+ G I K G F +G
Sbjct: 76 VYVERIENALGEAVLSREKARREESWQRLEVKFEAGERV--EGIIFNQVK-GGFTVDLDG 132
Query: 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM----SSIPASRRINLSFMMKPTRVSED 664
F PRS++ + P + + + H Q + M +I SRR L R
Sbjct: 133 AVAFLPRSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIV 192
Query: 665 DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA-DHLEHATVMKSVIKPGYE 723
++ G +V GVV +T V + G G + +A + H + ++ G +
Sbjct: 193 QNLEEGQVVEGVVKNITDYGAFVDL---GGIDGLLHVTDMAWRRVNHPS---EILNIGQQ 246
Query: 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSD-----ASHIHPNSVVHGYVCNIIETGC 777
Q++ ++ E+ + L K QL SD + + G V NI + G
Sbjct: 247 VKVQIIRINQETHRISLGMK--------QLESDPWDGIGAKYPVGKKISGTVTNITDYGA 298
Query: 778 FVRFLGRLTGFAPRSK-AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836
FV + G S+ + + K Q V +L+V+ RI+L LKQ+ +
Sbjct: 299 FVELEPGIEGLIHISEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLEN 358
Query: 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEE 896
A F H G+ +EG+V +FG+ + +
Sbjct: 359 PWQA-FAHSH--------------------------PAGTEVEGEVKNKTEFGLFIGLD- 390
Query: 897 HSDVYGFITHHQL----AGATV----ESGSVIQAAILDVAKAERLVDLSLKTVFIDRFRE 948
DV G + L G V G V++A +LDV + + L +K + D E
Sbjct: 391 -GDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDKERISLGIKQLGRDAVGE 449
Query: 949 ANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQ 1008
A AS +L + V+A V V + + + L + + +D +
Sbjct: 450 A-------------AASGELRKNAVVSAEVIGVNDGGIEVRLVNHEDVTAFIRRADLSRD 496
Query: 1009 KFPQK--QFLNGQSVIATVMALPSSSTAGRLLLLLKAISETETSSSKRAKKKSSYDVGSL 1066
+ Q+ +F GQ+V A V +L + I+E + + ++ S +G +
Sbjct: 497 RDEQRPERFSVGQTVDARVTNFSKKDRKIQLSIKALEIAEEKEAVAQFGSSDSGASLGDI 556
Query: 1067 VQAEI 1071
+ A +
Sbjct: 557 LGAAL 561
>sp|Q51152|YHGF_NEIMB Uncharacterized protein NMB0075 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=NMB0075 PE=4 SV=2
Length = 757
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 1442 RTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIE 1500
+TAS +E I+ +S+L VG I+ G + V ++G F+ I + GL H+S LS V +
Sbjct: 623 QTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDI-GVHQDGLVHISALSNKFVQDPR 681
Query: 1501 TIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDE 1549
+ +AG+ VKVK+L+VD ++RI+L M+ A + +M SE S E
Sbjct: 682 EVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGGAKH-KMPSENRSRE 729
Score = 38.5 bits (88), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 1257 IHE-GDI-VGGRISKILSGVG--GLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFV 1312
IHE D+ VG + ++S V G V IG H G VH + L N V DP G V
Sbjct: 631 IHEISDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVV 690
Query: 1313 KCKVLEI 1319
K KVLE+
Sbjct: 691 KVKVLEV 697
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 686,942,644
Number of Sequences: 539616
Number of extensions: 29386124
Number of successful extensions: 115553
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 609
Number of HSP's that attempted gapping in prelim test: 108654
Number of HSP's gapped (non-prelim): 5940
length of query: 1924
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1792
effective length of database: 120,340,147
effective search space: 215649543424
effective search space used: 215649543424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)