Query 000176
Match_columns 1924
No_of_seqs 684 out of 4550
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 22:02:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1070 rRNA processing protei 100.0 2E-200 3E-205 1857.8 102.4 1649 16-1923 4-1705(1710)
2 KOG1070 rRNA processing protei 100.0 3E-108 6E-113 1028.7 78.6 1478 122-1880 145-1699(1710)
3 COG0539 RpsA Ribosomal protein 100.0 9.9E-60 2.1E-64 573.2 42.1 492 314-835 14-516 (541)
4 COG0539 RpsA Ribosomal protein 100.0 5.4E-58 1.2E-62 558.0 44.8 496 402-945 16-518 (541)
5 PRK12269 bifunctional cytidyla 100.0 4E-56 8.8E-61 581.1 49.2 506 964-1530 315-827 (863)
6 PRK06299 rpsA 30S ribosomal pr 100.0 4E-55 8.8E-60 571.2 49.2 507 966-1532 26-534 (565)
7 TIGR00717 rpsA ribosomal prote 100.0 3.1E-54 6.7E-59 558.8 48.6 501 966-1528 14-516 (516)
8 PRK12269 bifunctional cytidyla 100.0 9.8E-54 2.1E-58 558.7 48.3 489 402-944 316-830 (863)
9 PRK06299 rpsA 30S ribosomal pr 100.0 9.7E-53 2.1E-57 548.8 49.0 496 403-945 26-536 (565)
10 TIGR00717 rpsA ribosomal prote 100.0 4.7E-52 1E-56 538.5 45.8 490 317-831 14-516 (516)
11 PRK13806 rpsA 30S ribosomal pr 100.0 2.8E-51 6E-56 519.0 44.7 419 1059-1530 30-451 (491)
12 PRK13806 rpsA 30S ribosomal pr 100.0 2.8E-46 6E-51 473.5 41.1 411 404-833 31-451 (491)
13 PRK07899 rpsA 30S ribosomal pr 100.0 1.6E-43 3.5E-48 438.7 36.2 333 1161-1530 33-365 (486)
14 PRK07899 rpsA 30S ribosomal pr 100.0 1E-40 2.2E-45 413.8 34.4 328 493-835 30-367 (486)
15 PRK06676 rpsA 30S ribosomal pr 100.0 5.2E-40 1.1E-44 410.3 36.7 336 1161-1532 15-351 (390)
16 PRK06676 rpsA 30S ribosomal pr 100.0 4.9E-39 1.1E-43 401.6 35.0 335 487-835 6-351 (390)
17 PRK00087 4-hydroxy-3-methylbut 100.0 6.5E-38 1.4E-42 410.5 36.0 335 1160-1530 299-634 (647)
18 PRK00087 4-hydroxy-3-methylbut 100.0 1.4E-35 3E-40 388.6 34.3 332 490-835 294-636 (647)
19 PRK07400 30S ribosomal protein 100.0 1.1E-32 2.3E-37 328.8 27.6 240 1257-1532 29-269 (318)
20 PRK07400 30S ribosomal protein 100.0 1.5E-30 3.3E-35 310.3 26.4 243 577-835 22-269 (318)
21 KOG1915 Cell cycle control pro 99.9 7.8E-23 1.7E-27 236.2 28.8 257 1656-1919 189-537 (677)
22 KOG1915 Cell cycle control pro 99.9 1.4E-22 3E-27 234.2 28.6 256 1656-1920 88-397 (677)
23 KOG0495 HAT repeat protein [RN 99.9 1.6E-19 3.5E-24 215.8 28.8 262 1644-1918 518-782 (913)
24 KOG0495 HAT repeat protein [RN 99.8 2E-18 4.3E-23 206.7 29.0 251 1653-1916 596-878 (913)
25 KOG2047 mRNA splicing factor [ 99.7 1.6E-16 3.6E-21 190.6 23.2 255 1654-1912 400-717 (835)
26 KOG2047 mRNA splicing factor [ 99.7 4.3E-15 9.3E-20 178.7 27.9 261 1654-1918 360-687 (835)
27 TIGR00990 3a0801s09 mitochondr 99.6 7.4E-14 1.6E-18 186.5 33.1 252 1657-1920 310-573 (615)
28 TIGR00990 3a0801s09 mitochondr 99.6 1.3E-13 2.9E-18 184.1 34.4 146 1733-1880 348-495 (615)
29 KOG4626 O-linked N-acetylgluco 99.6 1.6E-14 3.5E-19 172.3 21.8 246 1657-1917 234-484 (966)
30 PRK15174 Vi polysaccharide exp 99.6 1.5E-13 3.3E-18 183.2 33.8 251 1655-1918 124-381 (656)
31 KOG4626 O-linked N-acetylgluco 99.6 1.8E-14 3.9E-19 171.9 21.2 252 1655-1918 198-451 (966)
32 PRK11788 tetratricopeptide rep 99.6 3.3E-13 7.2E-18 170.6 33.8 257 1653-1918 47-311 (389)
33 PRK15174 Vi polysaccharide exp 99.6 3.3E-13 7.1E-18 179.9 35.1 251 1654-1917 89-346 (656)
34 PF05843 Suf: Suppressor of fo 99.6 7.2E-15 1.6E-19 175.3 15.1 135 1784-1921 2-139 (280)
35 PF13429 TPR_15: Tetratricopep 99.6 9E-15 2E-19 176.0 13.4 255 1653-1920 20-279 (280)
36 PTZ00248 eukaryotic translatio 99.6 5.9E-16 1.3E-20 180.3 2.8 148 1363-1515 12-172 (319)
37 COG2996 Predicted RNA-bindinin 99.6 5.9E-13 1.3E-17 147.1 23.8 231 583-850 3-237 (287)
38 TIGR02917 PEP_TPR_lipo putativ 99.5 1.1E-12 2.4E-17 183.6 32.9 248 1656-1916 650-898 (899)
39 COG1098 VacB Predicted RNA bin 99.5 4.5E-15 9.7E-20 144.1 6.0 75 1454-1530 2-76 (129)
40 TIGR02917 PEP_TPR_lipo putativ 99.5 1.7E-12 3.7E-17 181.7 33.6 251 1655-1917 479-731 (899)
41 PRK11447 cellulose synthase su 99.5 2.7E-12 5.9E-17 182.5 34.7 258 1654-1918 364-700 (1157)
42 PRK11447 cellulose synthase su 99.5 3.1E-12 6.7E-17 182.0 34.6 203 1654-1860 282-537 (1157)
43 PRK09782 bacteriophage N4 rece 99.5 4E-12 8.8E-17 172.9 32.0 248 1655-1917 490-739 (987)
44 KOG1914 mRNA cleavage and poly 99.5 4.3E-12 9.4E-17 151.2 26.1 237 1674-1917 236-500 (656)
45 COG2996 Predicted RNA-bindinin 99.5 3.3E-12 7.2E-17 141.3 22.9 216 1257-1532 3-220 (287)
46 PRK09782 bacteriophage N4 rece 99.5 1.7E-11 3.7E-16 166.8 33.1 245 1660-1919 460-707 (987)
47 KOG1126 DNA-binding cell divis 99.5 2.3E-12 4.9E-17 158.5 21.2 254 1657-1917 335-619 (638)
48 PRK11788 tetratricopeptide rep 99.5 2.4E-11 5.2E-16 153.7 30.8 252 1654-1918 82-347 (389)
49 KOG0547 Translocase of outer m 99.4 1.2E-11 2.6E-16 145.8 24.9 240 1652-1901 337-583 (606)
50 COG3063 PilF Tfp pilus assembl 99.4 2.4E-11 5.2E-16 132.4 23.5 193 1715-1912 36-230 (250)
51 PF13429 TPR_15: Tetratricopep 99.4 1.1E-12 2.3E-17 158.0 14.6 215 1655-1880 58-276 (280)
52 KOG1258 mRNA processing protei 99.4 5.2E-11 1.1E-15 146.1 27.9 250 1660-1917 64-394 (577)
53 cd05693 S1_Rrp5_repeat_hs1_sc1 99.4 4.6E-13 1E-17 132.6 8.4 90 131-222 1-100 (100)
54 cd05705 S1_Rrp5_repeat_hs14 S1 99.4 6.5E-13 1.4E-17 124.2 8.7 71 1455-1526 1-74 (74)
55 PRK12370 invasion protein regu 99.4 3.9E-11 8.6E-16 157.7 28.4 244 1657-1915 277-532 (553)
56 COG1098 VacB Predicted RNA bin 99.4 2.4E-13 5.2E-18 132.3 5.1 77 758-835 2-78 (129)
57 KOG1155 Anaphase-promoting com 99.4 6.8E-11 1.5E-15 139.0 25.5 248 1658-1917 244-494 (559)
58 TIGR00540 hemY_coli hemY prote 99.4 4.9E-10 1.1E-14 142.2 35.7 267 1645-1921 88-402 (409)
59 cd05705 S1_Rrp5_repeat_hs14 S1 99.4 1.2E-12 2.6E-17 122.5 8.8 71 1365-1435 1-74 (74)
60 TIGR02521 type_IV_pilW type IV 99.4 1.2E-10 2.6E-15 134.8 27.1 199 1714-1917 31-231 (234)
61 cd05694 S1_Rrp5_repeat_hs2_sc2 99.4 1.4E-12 2.9E-17 121.9 8.2 71 229-301 1-71 (74)
62 TIGR02521 type_IV_pilW type IV 99.4 1.8E-10 3.9E-15 133.3 27.2 199 1673-1880 29-231 (234)
63 cd05703 S1_Rrp5_repeat_hs12_sc 99.3 2.9E-12 6.4E-17 119.7 8.8 70 1458-1528 1-72 (73)
64 cd05694 S1_Rrp5_repeat_hs2_sc2 99.3 4.3E-12 9.4E-17 118.5 9.8 71 758-834 1-72 (74)
65 KOG1155 Anaphase-promoting com 99.3 2.1E-10 4.6E-15 135.0 25.8 252 1656-1918 277-536 (559)
66 PRK10049 pgaA outer membrane p 99.3 4.2E-10 9.1E-15 153.5 33.2 260 1654-1918 129-456 (765)
67 PF05843 Suf: Suppressor of fo 99.3 1.3E-11 2.7E-16 147.5 15.8 139 1716-1856 3-145 (280)
68 PRK12370 invasion protein regu 99.3 3.5E-10 7.5E-15 148.8 30.7 238 1670-1917 251-501 (553)
69 PTZ00248 eukaryotic translatio 99.3 1.1E-12 2.4E-17 153.3 6.1 133 1259-1413 17-158 (319)
70 PLN03218 maturation of RBCL 1; 99.3 8.5E-10 1.8E-14 151.5 34.2 250 1657-1915 488-745 (1060)
71 PRK10049 pgaA outer membrane p 99.3 3.8E-10 8.3E-15 153.9 30.6 253 1655-1918 97-422 (765)
72 PRK10747 putative protoheme IX 99.3 1.7E-09 3.7E-14 136.6 34.0 224 1682-1920 125-392 (398)
73 cd05703 S1_Rrp5_repeat_hs12_sc 99.3 8.1E-12 1.8E-16 116.8 9.0 70 1368-1437 1-72 (73)
74 KOG2076 RNA polymerase III tra 99.3 1.4E-09 3E-14 137.8 30.6 258 1652-1918 150-478 (895)
75 KOG0547 Translocase of outer m 99.3 3.8E-10 8.3E-15 133.4 23.7 232 1678-1921 329-569 (606)
76 KOG2396 HAT (Half-A-TPR) repea 99.3 6.4E-10 1.4E-14 132.5 25.7 257 1658-1922 122-563 (568)
77 KOG1914 mRNA cleavage and poly 99.3 1.2E-09 2.6E-14 130.8 26.9 265 1645-1917 23-359 (656)
78 COG3063 PilF Tfp pilus assembl 99.3 1.1E-09 2.3E-14 119.8 24.0 196 1675-1880 35-235 (250)
79 cd04461 S1_Rrp5_repeat_hs8_sc7 99.3 1.3E-11 2.8E-16 119.1 8.2 79 752-830 5-83 (83)
80 cd05704 S1_Rrp5_repeat_hs13 S1 99.3 1.4E-11 2.9E-16 115.1 8.1 71 1455-1528 1-72 (72)
81 cd05686 S1_pNO40 S1_pNO40: pNO 99.3 2E-11 4.3E-16 114.5 9.2 71 1456-1527 2-72 (73)
82 PLN03218 maturation of RBCL 1; 99.3 3.3E-09 7.2E-14 145.8 34.6 253 1655-1917 451-712 (1060)
83 PF00575 S1: S1 RNA binding do 99.2 4.1E-11 8.9E-16 113.1 10.2 74 1454-1528 1-74 (74)
84 PRK11189 lipoprotein NlpI; Pro 99.2 2.2E-09 4.7E-14 129.9 27.7 207 1660-1880 45-264 (296)
85 cd05696 S1_Rrp5_repeat_hs4 S1_ 99.2 3E-11 6.6E-16 112.4 8.7 69 1458-1527 1-71 (71)
86 cd05708 S1_Rrp5_repeat_sc12 S1 99.2 3.8E-11 8.1E-16 114.3 9.5 77 1456-1532 1-77 (77)
87 cd05706 S1_Rrp5_repeat_sc10 S1 99.2 4.7E-11 1E-15 112.3 9.7 73 1455-1528 1-73 (73)
88 cd05698 S1_Rrp5_repeat_hs6_sc5 99.2 3.7E-11 7.9E-16 112.0 8.4 70 762-831 1-70 (70)
89 cd05698 S1_Rrp5_repeat_hs6_sc5 99.2 3.9E-11 8.5E-16 111.8 8.5 70 1458-1528 1-70 (70)
90 PF00575 S1: S1 RNA binding do 99.2 7.8E-11 1.7E-15 111.1 10.5 73 759-831 2-74 (74)
91 cd05697 S1_Rrp5_repeat_hs5 S1_ 99.2 6E-11 1.3E-15 110.2 8.8 69 1458-1527 1-69 (69)
92 TIGR00540 hemY_coli hemY prote 99.2 3.6E-09 7.9E-14 134.2 27.5 226 1648-1880 160-398 (409)
93 KOG1258 mRNA processing protei 99.2 5.3E-09 1.1E-13 128.8 27.3 86 1656-1745 94-180 (577)
94 cd04461 S1_Rrp5_repeat_hs8_sc7 99.2 7.8E-11 1.7E-15 113.7 9.2 79 1358-1436 5-83 (83)
95 KOG1126 DNA-binding cell divis 99.2 4.6E-10 9.9E-15 138.6 18.1 210 1665-1888 411-625 (638)
96 PRK08582 hypothetical protein; 99.2 7.5E-11 1.6E-15 123.9 9.5 75 1454-1530 2-76 (139)
97 cd05706 S1_Rrp5_repeat_sc10 S1 99.2 1.7E-10 3.6E-15 108.6 10.7 73 1365-1437 1-73 (73)
98 COG2956 Predicted N-acetylgluc 99.2 2.3E-08 5E-13 113.6 28.8 225 1652-1881 46-278 (389)
99 cd05704 S1_Rrp5_repeat_hs13 S1 99.1 1.1E-10 2.4E-15 108.9 8.6 71 1365-1437 1-72 (72)
100 COG5107 RNA14 Pre-mRNA 3'-end 99.1 2.2E-09 4.9E-14 125.2 20.9 233 1675-1919 261-532 (660)
101 cd05707 S1_Rrp5_repeat_sc11 S1 99.1 1.1E-10 2.4E-15 108.0 8.1 68 1458-1526 1-68 (68)
102 cd04452 S1_IF2_alpha S1_IF2_al 99.1 2.1E-10 4.6E-15 108.8 9.7 74 1456-1529 2-76 (76)
103 cd05693 S1_Rrp5_repeat_hs1_sc1 99.1 9E-11 2E-15 116.4 7.0 77 1455-1532 1-99 (100)
104 cd05707 S1_Rrp5_repeat_sc11 S1 99.1 1.4E-10 3.1E-15 107.3 7.9 68 762-829 1-68 (68)
105 cd05697 S1_Rrp5_repeat_hs5 S1_ 99.1 2E-10 4.3E-15 106.7 8.6 69 762-830 1-69 (69)
106 PRK07252 hypothetical protein; 99.1 2.6E-10 5.6E-15 116.6 9.8 75 1456-1531 2-76 (120)
107 cd05690 S1_RPS1_repeat_ec5 S1_ 99.1 1.9E-10 4E-15 107.0 8.1 68 1458-1526 1-69 (69)
108 cd05696 S1_Rrp5_repeat_hs4 S1_ 99.1 2.5E-10 5.4E-15 106.3 8.7 69 762-830 1-71 (71)
109 PRK08582 hypothetical protein; 99.1 3.6E-10 7.8E-15 118.8 10.9 79 1365-1444 3-81 (139)
110 PLN03081 pentatricopeptide (PP 99.1 8.2E-09 1.8E-13 140.4 26.8 248 1656-1916 305-555 (697)
111 cd05699 S1_Rrp5_repeat_hs7 S1_ 99.1 3.1E-10 6.7E-15 102.2 7.8 71 670-742 1-72 (72)
112 PRK05807 hypothetical protein; 99.1 4.1E-10 8.9E-15 118.0 9.8 74 1454-1530 2-75 (136)
113 PRK11189 lipoprotein NlpI; Pro 99.1 1.7E-08 3.8E-13 122.1 25.2 219 1689-1918 40-265 (296)
114 KOG1173 Anaphase-promoting com 99.1 1.4E-08 2.9E-13 123.1 23.1 230 1666-1904 303-542 (611)
115 cd05691 S1_RPS1_repeat_ec6 S1_ 99.1 5E-10 1.1E-14 105.4 8.8 71 1458-1529 1-71 (73)
116 KOG2002 TPR-containing nuclear 99.1 2.7E-08 5.9E-13 127.0 26.5 256 1657-1922 180-446 (1018)
117 cd05689 S1_RPS1_repeat_ec4 S1_ 99.0 5.8E-10 1.3E-14 104.6 8.8 71 1455-1526 1-72 (72)
118 PRK07252 hypothetical protein; 99.0 7.5E-10 1.6E-14 113.2 10.1 76 760-835 2-77 (120)
119 cd05695 S1_Rrp5_repeat_hs3 S1_ 99.0 6.3E-10 1.4E-14 101.9 8.4 66 1458-1526 1-66 (66)
120 PLN03081 pentatricopeptide (PP 99.0 2.6E-08 5.6E-13 135.6 27.3 223 1675-1914 259-487 (697)
121 KOG1173 Anaphase-promoting com 99.0 4.2E-08 9E-13 119.0 25.3 252 1654-1917 257-517 (611)
122 cd05708 S1_Rrp5_repeat_sc12 S1 99.0 1.1E-09 2.3E-14 104.3 9.0 74 760-833 1-75 (77)
123 PRK10747 putative protoheme IX 99.0 4.9E-08 1.1E-12 123.4 26.6 227 1646-1880 158-389 (398)
124 cd05687 S1_RPS1_repeat_ec1_hs1 99.0 1.2E-09 2.7E-14 101.7 8.9 70 1458-1528 1-70 (70)
125 cd04452 S1_IF2_alpha S1_IF2_al 99.0 1.5E-09 3.3E-14 103.0 9.5 73 760-832 2-76 (76)
126 KOG1125 TPR repeat-containing 99.0 9.7E-09 2.1E-13 125.2 18.4 214 1654-1869 298-559 (579)
127 cd05684 S1_DHX8_helicase S1_DH 99.0 1.5E-09 3.2E-14 103.7 9.2 71 1458-1530 1-74 (79)
128 KOG2002 TPR-containing nuclear 99.0 6.9E-08 1.5E-12 123.4 26.6 224 1657-1889 146-377 (1018)
129 cd05690 S1_RPS1_repeat_ec5 S1_ 99.0 9.6E-10 2.1E-14 102.2 7.6 68 762-829 1-69 (69)
130 COG5107 RNA14 Pre-mRNA 3'-end 99.0 7.6E-08 1.6E-12 112.8 24.6 241 1667-1918 34-331 (660)
131 cd05695 S1_Rrp5_repeat_hs3 S1_ 99.0 1.4E-09 3.1E-14 99.6 8.3 66 762-829 1-66 (66)
132 PRK08059 general stress protei 99.0 1.5E-09 3.3E-14 112.4 9.5 78 1452-1530 2-79 (123)
133 cd05691 S1_RPS1_repeat_ec6 S1_ 99.0 2.2E-09 4.7E-14 101.0 9.6 72 1368-1439 1-72 (73)
134 cd05692 S1_RPS1_repeat_hs4 S1_ 99.0 2E-09 4.4E-14 99.9 8.6 69 1458-1528 1-69 (69)
135 cd05686 S1_pNO40 S1_pNO40: pNO 98.9 3.2E-09 6.9E-14 99.6 9.5 70 1366-1436 2-72 (73)
136 PHA02945 interferon resistance 98.9 2.5E-09 5.3E-14 98.9 8.4 73 1455-1530 9-84 (88)
137 cd05689 S1_RPS1_repeat_ec4 S1_ 98.9 2.7E-09 5.8E-14 100.1 8.6 71 759-829 1-72 (72)
138 KOG0128 RNA-binding protein SA 98.9 5.4E-08 1.2E-12 122.5 22.5 268 1644-1913 152-558 (881)
139 KOG1129 TPR repeat-containing 98.9 4.1E-08 8.9E-13 111.0 19.2 227 1679-1918 227-458 (478)
140 PLN03077 Protein ECB2; Provisi 98.9 9.7E-08 2.1E-12 133.1 27.9 190 1716-1916 426-616 (857)
141 PLN03077 Protein ECB2; Provisi 98.9 1.6E-07 3.5E-12 130.9 30.0 246 1657-1916 471-718 (857)
142 cd05687 S1_RPS1_repeat_ec1_hs1 98.9 3.8E-09 8.2E-14 98.5 9.2 70 1368-1437 1-70 (70)
143 cd05685 S1_Tex S1_Tex: The C-t 98.9 2.6E-09 5.7E-14 98.9 8.0 68 1458-1526 1-68 (68)
144 KOG1129 TPR repeat-containing 98.9 3.3E-08 7.1E-13 111.7 17.1 215 1658-1880 240-457 (478)
145 PRK08059 general stress protei 98.9 6.4E-09 1.4E-13 107.8 10.8 81 1363-1443 3-83 (123)
146 PRK05807 hypothetical protein; 98.9 6.3E-09 1.4E-13 109.2 10.5 74 1365-1440 3-76 (136)
147 PLN02789 farnesyltranstransfer 98.9 5.2E-07 1.1E-11 109.3 26.9 229 1655-1893 51-311 (320)
148 KOG1125 TPR repeat-containing 98.9 1.4E-07 2.9E-12 115.4 21.2 230 1680-1921 290-530 (579)
149 cd04465 S1_RPS1_repeat_ec2_hs2 98.8 9.4E-09 2E-13 94.8 8.7 67 762-831 1-67 (67)
150 TIGR02696 pppGpp_PNP guanosine 98.8 5.7E-09 1.2E-13 134.0 9.8 101 1423-1526 611-718 (719)
151 PRK14574 hmsH outer membrane p 98.8 1.1E-06 2.4E-11 118.2 31.4 252 1654-1916 115-511 (822)
152 cd04465 S1_RPS1_repeat_ec2_hs2 98.8 1.2E-08 2.6E-13 94.1 9.0 67 1458-1528 1-67 (67)
153 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 98.8 8.2E-09 1.8E-13 100.4 8.3 76 1455-1532 4-83 (86)
154 COG2956 Predicted N-acetylgluc 98.8 9E-07 2E-11 101.0 25.5 222 1687-1917 47-277 (389)
155 cd05692 S1_RPS1_repeat_hs4 S1_ 98.8 1.1E-08 2.3E-13 95.0 8.5 69 762-831 1-69 (69)
156 cd05688 S1_RPS1_repeat_ec3 S1_ 98.8 1.2E-08 2.5E-13 94.6 8.5 68 1457-1526 1-68 (68)
157 COG1093 SUI2 Translation initi 98.8 4E-09 8.7E-14 116.9 6.2 74 1456-1529 10-84 (269)
158 cd05685 S1_Tex S1_Tex: The C-t 98.8 9.8E-09 2.1E-13 95.0 7.6 68 762-829 1-68 (68)
159 KOG1840 Kinesin light chain [C 98.8 7.8E-07 1.7E-11 112.2 26.8 247 1672-1922 196-483 (508)
160 cd04472 S1_PNPase S1_PNPase: P 98.8 1.3E-08 2.9E-13 94.2 8.4 68 1458-1527 1-68 (68)
161 KOG2076 RNA polymerase III tra 98.8 1.6E-06 3.5E-11 110.8 29.4 230 1669-1907 201-544 (895)
162 cd04471 S1_RNase_R S1_RNase_R: 98.8 1.8E-08 3.8E-13 97.4 9.3 71 1457-1527 1-82 (83)
163 PLN00207 polyribonucleotide nu 98.8 7.8E-09 1.7E-13 135.5 8.7 79 1452-1532 748-827 (891)
164 TIGR03302 OM_YfiO outer membra 98.8 4.9E-07 1.1E-11 106.0 23.2 188 1671-1880 29-231 (235)
165 PRK15359 type III secretion sy 98.8 1.3E-07 2.9E-12 101.5 16.8 124 1736-1863 13-137 (144)
166 PRK15179 Vi polysaccharide bio 98.8 3.3E-07 7.1E-12 121.1 23.6 135 1745-1881 82-217 (694)
167 cd05684 S1_DHX8_helicase S1_DH 98.8 3.3E-08 7.2E-13 94.4 10.1 72 1368-1441 1-76 (79)
168 PRK03987 translation initiatio 98.8 1.6E-08 3.5E-13 117.5 9.2 75 1455-1529 6-81 (262)
169 smart00316 S1 Ribosomal protei 98.8 2.8E-08 6.1E-13 92.8 9.0 72 1456-1528 1-72 (72)
170 cd04453 S1_RNase_E S1_RNase_E: 98.7 2.6E-08 5.6E-13 96.5 8.5 74 1454-1528 4-82 (88)
171 KOG2003 TPR repeat-containing 98.7 1.3E-06 2.8E-11 102.1 23.2 259 1643-1914 421-685 (840)
172 TIGR03302 OM_YfiO outer membra 98.7 9E-07 2E-11 103.7 22.4 164 1750-1916 34-230 (235)
173 cd04472 S1_PNPase S1_PNPase: P 98.7 3.6E-08 7.9E-13 91.3 8.3 68 762-830 1-68 (68)
174 KOG1128 Uncharacterized conser 98.7 3.1E-07 6.8E-12 114.5 18.8 214 1679-1918 402-616 (777)
175 cd05804 StaR_like StaR_like; a 98.7 9.2E-07 2E-11 110.5 23.7 186 1657-1849 22-217 (355)
176 PLN02789 farnesyltranstransfer 98.7 2.2E-06 4.8E-11 103.9 25.8 200 1673-1880 35-249 (320)
177 cd04473 S1_RecJ_like S1_RecJ_l 98.7 5.1E-08 1.1E-12 92.5 9.3 67 1451-1527 10-76 (77)
178 KOG0624 dsRNA-activated protei 98.7 6.2E-06 1.3E-10 94.3 27.2 195 1654-1857 51-262 (504)
179 smart00316 S1 Ribosomal protei 98.7 5.1E-08 1.1E-12 91.0 9.1 72 1366-1437 1-72 (72)
180 COG2183 Tex Transcriptional ac 98.7 1.8E-08 3.8E-13 128.0 7.1 79 1451-1530 652-730 (780)
181 PHA02945 interferon resistance 98.7 6.2E-08 1.3E-12 89.8 8.7 72 1366-1440 10-85 (88)
182 PRK15179 Vi polysaccharide bio 98.7 6.3E-07 1.4E-11 118.5 21.8 164 1751-1919 51-218 (694)
183 cd05688 S1_RPS1_repeat_ec3 S1_ 98.7 6.4E-08 1.4E-12 89.6 8.4 68 1367-1435 1-68 (68)
184 KOG1128 Uncharacterized conser 98.7 1.9E-07 4.1E-12 116.5 14.7 199 1657-1880 414-615 (777)
185 COG2183 Tex Transcriptional ac 98.7 3.1E-08 6.7E-13 125.8 7.9 86 1356-1441 647-732 (780)
186 PRK10370 formate-dependent nit 98.7 3.5E-07 7.7E-12 103.6 15.8 117 1762-1880 52-172 (198)
187 PRK10370 formate-dependent nit 98.7 3.6E-07 7.7E-12 103.6 15.5 121 1731-1853 54-179 (198)
188 PRK09521 exosome complex RNA-b 98.7 1.1E-07 2.3E-12 106.6 11.1 96 1423-1532 41-145 (189)
189 cd05702 S1_Rrp5_repeat_hs11_sc 98.7 6.7E-08 1.5E-12 90.0 7.8 63 1458-1521 1-65 (70)
190 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 98.6 6.8E-08 1.5E-12 94.0 8.2 75 1365-1440 4-82 (86)
191 PRK14574 hmsH outer membrane p 98.6 2.3E-06 4.9E-11 115.3 25.0 198 1670-1877 29-228 (822)
192 PLN00207 polyribonucleotide nu 98.6 5.2E-08 1.1E-12 127.9 9.2 82 1364-1446 750-832 (891)
193 cd04454 S1_Rrp4_like S1_Rrp4_l 98.6 9.4E-08 2E-12 92.0 8.6 75 1456-1532 5-79 (82)
194 KOG1174 Anaphase-promoting com 98.6 5.1E-06 1.1E-10 97.2 24.1 229 1653-1888 244-505 (564)
195 cd05804 StaR_like StaR_like; a 98.6 1.1E-05 2.5E-10 100.7 29.6 203 1671-1879 2-213 (355)
196 KOG1840 Kinesin light chain [C 98.6 1.7E-06 3.7E-11 109.1 21.5 225 1654-1880 212-478 (508)
197 TIGR02552 LcrH_SycD type III s 98.6 1E-06 2.2E-11 93.6 16.2 117 1737-1855 4-122 (135)
198 KOG3060 Uncharacterized conser 98.6 7E-06 1.5E-10 91.3 22.6 159 1756-1919 59-221 (289)
199 PRK15359 type III secretion sy 98.6 1E-06 2.2E-11 94.8 15.8 117 1768-1892 12-129 (144)
200 PRK11824 polynucleotide phosph 98.6 9.3E-08 2E-12 126.8 9.4 76 1452-1529 616-691 (693)
201 COG1185 Pnp Polyribonucleotide 98.6 7.2E-08 1.6E-12 120.5 7.6 104 1423-1529 585-689 (692)
202 cd04453 S1_RNase_E S1_RNase_E: 98.6 2.1E-07 4.7E-12 90.2 8.8 75 1364-1438 4-83 (88)
203 cd04471 S1_RNase_R S1_RNase_R: 98.6 2.7E-07 5.8E-12 89.2 9.5 70 1367-1436 1-82 (83)
204 KOG3060 Uncharacterized conser 98.6 1.2E-05 2.6E-10 89.5 23.2 192 1657-1857 28-230 (289)
205 COG1093 SUI2 Translation initi 98.5 6.4E-08 1.4E-12 107.5 5.3 75 761-835 11-87 (269)
206 KOG0128 RNA-binding protein SA 98.5 9.3E-06 2E-10 102.9 24.6 75 1819-1896 313-388 (881)
207 cd05702 S1_Rrp5_repeat_hs11_sc 98.5 2.3E-07 5E-12 86.3 8.0 63 1368-1430 1-65 (70)
208 KOG4162 Predicted calmodulin-b 98.5 1.6E-05 3.4E-10 100.4 26.2 250 1660-1920 463-785 (799)
209 KOG2003 TPR repeat-containing 98.5 6.4E-06 1.4E-10 96.4 21.0 211 1657-1880 472-688 (840)
210 PRK03987 translation initiatio 98.5 2.6E-07 5.6E-12 107.6 9.8 77 1365-1441 6-84 (262)
211 cd04454 S1_Rrp4_like S1_Rrp4_l 98.5 3.3E-07 7.1E-12 88.3 8.9 74 1366-1440 5-78 (82)
212 cd04473 S1_RecJ_like S1_RecJ_l 98.5 4.7E-07 1E-11 85.9 9.7 71 575-654 6-76 (77)
213 cd00164 S1_like S1_like: Ribos 98.5 2.4E-07 5.3E-12 84.5 7.1 65 1461-1526 1-65 (65)
214 KOG1174 Anaphase-promoting com 98.5 1.5E-05 3.3E-10 93.4 22.9 196 1657-1862 316-515 (564)
215 TIGR02552 LcrH_SycD type III s 98.5 2.7E-06 5.9E-11 90.3 15.4 115 1770-1888 4-119 (135)
216 COG3071 HemY Uncharacterized e 98.5 0.00024 5.2E-09 84.4 32.3 253 1652-1919 95-391 (400)
217 TIGR02696 pppGpp_PNP guanosine 98.5 2.5E-07 5.5E-12 119.2 8.5 71 758-829 644-718 (719)
218 cd04460 S1_RpoE S1_RpoE: RpoE, 98.5 4.8E-07 1E-11 90.4 8.4 72 1459-1532 1-88 (99)
219 cd00164 S1_like S1_like: Ribos 98.4 4.1E-07 8.9E-12 83.0 7.2 65 1371-1435 1-65 (65)
220 PRK14720 transcript cleavage f 98.4 3.2E-05 6.9E-10 103.0 25.5 210 1669-1889 25-258 (906)
221 KOG0624 dsRNA-activated protei 98.4 2.7E-05 5.9E-10 89.2 21.1 260 1655-1919 86-371 (504)
222 PF08424 NRDE-2: NRDE-2, neces 98.4 9.1E-06 2E-10 99.3 18.8 159 1661-1848 5-184 (321)
223 TIGR03591 polynuc_phos polyrib 98.4 5.2E-07 1.1E-11 119.5 7.8 72 1452-1525 613-684 (684)
224 KOG1156 N-terminal acetyltrans 98.4 0.00014 3E-09 90.5 27.8 131 1657-1794 91-264 (700)
225 KOG4162 Predicted calmodulin-b 98.3 4.3E-05 9.2E-10 96.6 23.5 222 1658-1881 495-783 (799)
226 COG4783 Putative Zn-dependent 98.3 2.4E-05 5.2E-10 94.9 19.9 130 1749-1880 306-436 (484)
227 PRK11824 polynucleotide phosph 98.3 1.4E-06 3.1E-11 115.7 10.5 76 1363-1439 617-692 (693)
228 PF12569 NARP1: NMDA receptor- 98.3 0.00029 6.3E-09 90.4 30.4 89 1790-1880 201-290 (517)
229 PRK14720 transcript cleavage f 98.3 2.5E-05 5.5E-10 103.9 21.3 197 1712-1918 29-252 (906)
230 KOG2396 HAT (Half-A-TPR) repea 98.3 1.1E-05 2.3E-10 97.4 16.0 98 1766-1865 88-187 (568)
231 PRK09521 exosome complex RNA-b 98.3 3.8E-06 8.3E-11 94.2 11.8 75 1363-1440 60-144 (189)
232 COG5010 TadD Flp pilus assembl 98.3 7.4E-05 1.6E-09 84.5 20.6 158 1718-1879 70-229 (257)
233 PF12569 NARP1: NMDA receptor- 98.2 0.00021 4.5E-09 91.8 27.1 224 1655-1880 52-333 (517)
234 COG5010 TadD Flp pilus assembl 98.2 8.4E-05 1.8E-09 84.1 20.3 171 1735-1911 52-224 (257)
235 cd05699 S1_Rrp5_repeat_hs7 S1_ 98.2 4E-06 8.6E-11 76.1 7.5 62 875-939 1-72 (72)
236 COG4235 Cytochrome c biogenesi 98.2 3.3E-05 7.2E-10 89.5 16.7 118 1732-1851 138-260 (287)
237 PRK04163 exosome complex RNA-b 98.2 4.2E-06 9.1E-11 96.8 8.8 77 1455-1533 61-141 (235)
238 COG4783 Putative Zn-dependent 98.2 0.00014 3.1E-09 88.4 21.8 131 1780-1915 303-434 (484)
239 COG3071 HemY Uncharacterized e 98.2 0.00074 1.6E-08 80.4 27.0 225 1644-1880 156-389 (400)
240 KOG0550 Molecular chaperone (D 98.2 7.8E-05 1.7E-09 88.1 18.5 260 1656-1918 64-350 (486)
241 cd04460 S1_RpoE S1_RpoE: RpoE, 98.2 6.4E-06 1.4E-10 82.4 8.5 76 1369-1445 1-92 (99)
242 COG4700 Uncharacterized protei 98.1 0.00019 4.1E-09 76.3 18.9 141 1739-1880 79-225 (251)
243 PLN03088 SGT1, suppressor of 98.1 4E-05 8.6E-10 95.2 16.4 107 1753-1861 6-113 (356)
244 cd00189 TPR Tetratricopeptide 98.1 2.7E-05 5.8E-10 75.2 12.0 96 1752-1849 3-99 (100)
245 PRK10866 outer membrane biogen 98.1 0.00036 7.9E-09 81.7 23.2 184 1674-1879 31-239 (243)
246 TIGR02795 tol_pal_ybgF tol-pal 98.1 6.1E-05 1.3E-09 77.6 14.6 103 1751-1853 4-111 (119)
247 PF09976 TPR_21: Tetratricopep 98.1 8.5E-05 1.9E-09 80.1 16.0 118 1761-1879 23-145 (145)
248 TIGR00448 rpoE DNA-directed RN 98.1 1.2E-05 2.6E-10 89.5 9.5 77 1456-1534 80-172 (179)
249 TIGR03591 polynuc_phos polyrib 98.1 5.3E-06 1.1E-10 110.1 7.8 71 757-828 614-684 (684)
250 cd04455 S1_NusA S1_NusA: N-uti 98.1 1.7E-05 3.8E-10 73.0 8.9 63 1366-1435 2-66 (67)
251 cd04455 S1_NusA S1_NusA: N-uti 98.1 1.5E-05 3.2E-10 73.5 8.4 63 760-829 2-66 (67)
252 PRK04163 exosome complex RNA-b 98.1 3E-05 6.6E-10 89.8 13.0 72 584-656 62-137 (235)
253 PRK09202 nusA transcription el 98.0 5.5E-06 1.2E-10 104.1 6.9 107 542-656 86-200 (470)
254 KOG0548 Molecular co-chaperone 98.0 0.00072 1.6E-08 83.1 24.4 200 1656-1862 239-470 (539)
255 KOG1156 N-terminal acetyltrans 98.0 0.00028 6.2E-09 87.8 21.2 216 1657-1880 57-282 (700)
256 TIGR02063 RNase_R ribonuclease 98.0 1E-05 2.2E-10 109.1 9.6 76 1452-1527 622-708 (709)
257 COG1095 RPB7 DNA-directed RNA 98.0 1.2E-05 2.6E-10 86.1 7.9 77 1456-1534 80-172 (183)
258 PF08424 NRDE-2: NRDE-2, neces 98.0 0.00021 4.5E-09 87.5 20.1 147 1771-1919 7-184 (321)
259 KOG1127 TPR repeat-containing 98.0 0.00013 2.9E-09 93.9 18.1 191 1715-1915 462-656 (1238)
260 PRK09202 nusA transcription el 98.0 5.3E-06 1.2E-10 104.2 5.9 119 717-849 86-210 (470)
261 PF13525 YfiO: Outer membrane 98.0 0.00066 1.4E-08 77.6 22.2 178 1674-1873 4-199 (203)
262 cd00189 TPR Tetratricopeptide 98.0 5.9E-05 1.3E-09 72.8 11.8 94 1785-1880 2-96 (100)
263 KOG0553 TPR repeat-containing 98.0 6.7E-05 1.5E-09 86.3 13.6 130 1757-1888 89-222 (304)
264 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00013 2.7E-09 75.3 14.0 104 1783-1888 2-110 (119)
265 PLN03088 SGT1, suppressor of 97.9 0.00012 2.6E-09 91.0 16.2 107 1786-1896 5-113 (356)
266 PRK04841 transcriptional regul 97.9 0.0017 3.6E-08 92.0 29.6 265 1654-1921 465-763 (903)
267 PRK11642 exoribonuclease R; Pr 97.9 2E-05 4.4E-10 106.0 9.5 74 1455-1528 641-725 (813)
268 KOG0548 Molecular co-chaperone 97.9 0.0022 4.7E-08 79.0 25.5 91 1825-1918 365-455 (539)
269 PRK15363 pathogenicity island 97.9 0.00034 7.4E-09 74.4 16.1 97 1750-1848 36-133 (157)
270 COG5191 Uncharacterized conser 97.9 4.2E-05 9.1E-10 86.7 9.4 155 1690-1864 32-188 (435)
271 cd05791 S1_CSL4 S1_CSL4: CSL4, 97.9 3.8E-05 8.2E-10 75.3 7.8 75 1455-1530 4-87 (92)
272 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00024 5.1E-09 88.0 16.4 121 1717-1843 172-293 (395)
273 PRK10803 tol-pal system protei 97.8 0.00025 5.5E-09 83.6 15.3 104 1750-1853 143-252 (263)
274 TIGR00358 3_prime_RNase VacB a 97.8 4.1E-05 8.8E-10 102.0 9.6 74 1454-1527 569-653 (654)
275 COG1185 Pnp Polyribonucleotide 97.8 2.7E-05 5.8E-10 98.2 7.1 77 1362-1439 614-690 (692)
276 KOG0553 TPR repeat-containing 97.8 0.001 2.2E-08 76.9 18.9 109 1789-1903 87-197 (304)
277 TIGR01953 NusA transcription t 97.8 6.7E-05 1.4E-09 90.8 9.2 121 714-849 80-208 (341)
278 cd05701 S1_Rrp5_repeat_hs10 S1 97.8 2.9E-05 6.2E-10 66.9 4.1 59 971-1029 1-60 (69)
279 TIGR00448 rpoE DNA-directed RN 97.8 0.00011 2.4E-09 81.8 10.1 77 1366-1443 80-172 (179)
280 PRK04841 transcriptional regul 97.7 0.0063 1.4E-07 86.2 30.2 238 1682-1921 459-723 (903)
281 PRK08563 DNA-directed RNA poly 97.7 0.00011 2.4E-09 82.7 9.8 77 1455-1533 79-171 (187)
282 PRK02603 photosystem I assembl 97.7 0.00059 1.3E-08 75.9 15.6 101 1785-1887 37-153 (172)
283 PF09976 TPR_21: Tetratricopep 97.7 0.00078 1.7E-08 72.6 16.0 134 1764-1916 7-145 (145)
284 CHL00033 ycf3 photosystem I as 97.7 0.00039 8.5E-09 77.0 14.0 116 1765-1880 15-141 (168)
285 KOG1127 TPR repeat-containing 97.7 0.00047 1E-08 89.1 16.0 185 1657-1850 474-662 (1238)
286 PRK15363 pathogenicity island 97.7 0.00082 1.8E-08 71.6 15.3 101 1713-1815 34-136 (157)
287 PF13432 TPR_16: Tetratricopep 97.7 7.6E-05 1.6E-09 68.3 6.8 62 1823-1886 2-63 (65)
288 KOG2376 Signal recognition par 97.7 0.0095 2.1E-07 74.1 26.1 241 1671-1922 106-450 (652)
289 PRK10153 DNA-binding transcrip 97.7 0.0013 2.8E-08 85.2 20.1 112 1798-1915 400-511 (517)
290 KOG3617 WD40 and TPR repeat-co 97.7 0.0049 1.1E-07 78.0 23.8 227 1679-1921 804-1112(1416)
291 PRK10803 tol-pal system protei 97.7 0.0007 1.5E-08 79.9 16.1 104 1782-1887 141-250 (263)
292 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00078 1.7E-08 83.5 16.9 124 1750-1878 170-294 (395)
293 PF13414 TPR_11: TPR repeat; P 97.7 0.00017 3.7E-09 66.8 8.6 65 1783-1849 3-69 (69)
294 KOG2376 Signal recognition par 97.7 0.017 3.6E-07 72.0 27.5 244 1669-1918 168-487 (652)
295 PF14938 SNAP: Soluble NSF att 97.6 0.00074 1.6E-08 81.4 15.8 128 1753-1881 79-225 (282)
296 PRK11906 transcriptional regul 97.6 0.0013 2.9E-08 80.8 17.6 103 1797-1903 319-422 (458)
297 COG4235 Cytochrome c biogenesi 97.6 0.0012 2.6E-08 76.9 16.4 121 1765-1888 138-262 (287)
298 cd05700 S1_Rrp5_repeat_hs9 S1_ 97.6 0.0003 6.5E-09 59.9 8.3 64 875-938 1-65 (65)
299 KOG1067 Predicted RNA-binding 97.6 5E-05 1.1E-09 91.7 5.0 77 757-833 664-740 (760)
300 KOG3617 WD40 and TPR repeat-co 97.6 0.0047 1E-07 78.1 21.9 223 1674-1915 756-1048(1416)
301 cd05791 S1_CSL4 S1_CSL4: CSL4, 97.6 0.00017 3.6E-09 70.8 7.7 75 1365-1440 4-88 (92)
302 PF14938 SNAP: Soluble NSF att 97.6 0.0013 2.8E-08 79.3 16.9 172 1732-1916 31-223 (282)
303 COG3898 Uncharacterized membra 97.6 0.038 8.3E-07 65.5 27.4 222 1682-1917 127-391 (531)
304 TIGR02063 RNase_R ribonuclease 97.6 0.00017 3.8E-09 97.4 10.2 72 1365-1436 625-708 (709)
305 PF12895 Apc3: Anaphase-promot 97.6 0.00016 3.5E-09 69.9 7.1 81 1797-1878 4-84 (84)
306 COG0457 NrfG FOG: TPR repeat [ 97.6 0.073 1.6E-06 60.0 30.4 217 1657-1880 39-264 (291)
307 KOG1067 Predicted RNA-binding 97.6 6.5E-05 1.4E-09 90.8 4.9 76 582-657 665-740 (760)
308 KOG3785 Uncharacterized conser 97.6 0.0014 2.9E-08 75.9 15.1 194 1652-1863 33-230 (557)
309 TIGR01953 NusA transcription t 97.5 0.00013 2.8E-09 88.3 7.3 108 541-656 82-198 (341)
310 KOG0543 FKBP-type peptidyl-pro 97.5 0.0011 2.3E-08 79.8 14.6 139 1720-1880 214-354 (397)
311 CHL00033 ycf3 photosystem I as 97.5 0.0011 2.4E-08 73.4 13.9 96 1735-1832 18-120 (168)
312 PRK02603 photosystem I assembl 97.5 0.0021 4.6E-08 71.4 16.2 100 1750-1851 36-153 (172)
313 PF13525 YfiO: Outer membrane 97.5 0.008 1.7E-07 68.8 20.8 156 1750-1907 6-196 (203)
314 PF13414 TPR_11: TPR repeat; P 97.5 0.0003 6.4E-09 65.2 7.4 63 1818-1880 3-66 (69)
315 PF14559 TPR_19: Tetratricopep 97.5 0.0003 6.5E-09 64.9 7.4 52 1829-1880 2-53 (68)
316 PF04733 Coatomer_E: Coatomer 97.5 0.0011 2.4E-08 79.7 13.9 154 1685-1852 112-270 (290)
317 COG1095 RPB7 DNA-directed RNA 97.5 0.00029 6.2E-09 75.7 7.8 75 1367-1442 81-171 (183)
318 PF13432 TPR_16: Tetratricopep 97.5 0.00041 8.9E-09 63.4 7.9 62 1788-1851 2-64 (65)
319 PF14559 TPR_19: Tetratricopep 97.5 0.00033 7.2E-09 64.6 7.3 65 1794-1860 2-67 (68)
320 KOG0550 Molecular chaperone (D 97.5 0.0035 7.6E-08 74.7 17.0 170 1672-1850 166-353 (486)
321 COG0457 NrfG FOG: TPR repeat [ 97.5 0.11 2.3E-06 58.6 29.6 223 1688-1918 36-265 (291)
322 PRK12327 nusA transcription el 97.4 0.00018 3.8E-09 87.7 6.6 106 542-655 86-199 (362)
323 PRK11906 transcriptional regul 97.4 0.0059 1.3E-07 75.3 19.2 155 1669-1853 242-407 (458)
324 PRK11642 exoribonuclease R; Pr 97.4 0.00047 1E-08 93.2 9.9 73 1366-1438 642-726 (813)
325 PHA02858 EIF2a-like PKR inhibi 97.4 0.00048 1E-08 63.6 6.8 74 1452-1527 11-85 (86)
326 KOG2053 Mitochondrial inherita 97.4 0.065 1.4E-06 69.9 28.1 227 1657-1897 25-265 (932)
327 COG5191 Uncharacterized conser 97.4 0.00019 4.1E-09 81.7 5.0 99 1799-1902 90-189 (435)
328 TIGR00358 3_prime_RNase VacB a 97.4 0.0005 1.1E-08 91.8 9.9 71 1366-1436 571-653 (654)
329 PRK10866 outer membrane biogen 97.3 0.027 5.9E-07 66.1 23.1 160 1750-1912 33-235 (243)
330 PRK08563 DNA-directed RNA poly 97.3 0.00073 1.6E-08 76.0 9.6 77 1366-1443 80-172 (187)
331 PRK10153 DNA-binding transcrip 97.3 0.012 2.6E-07 76.4 21.8 156 1661-1852 323-487 (517)
332 PF12895 Apc3: Anaphase-promot 97.3 0.00071 1.5E-08 65.5 7.8 80 1762-1844 2-84 (84)
333 PF12688 TPR_5: Tetratrico pep 97.3 0.0068 1.5E-07 62.6 15.0 97 1784-1880 2-103 (120)
334 PF04733 Coatomer_E: Coatomer 97.3 0.0036 7.9E-08 75.3 14.9 146 1739-1888 118-270 (290)
335 PF08311 Mad3_BUB1_I: Mad3/BUB 97.2 0.0028 6.1E-08 66.2 11.9 111 1799-1916 2-126 (126)
336 cd04462 S1_RNAPII_Rpb7 S1_RNAP 97.2 0.0019 4.1E-08 62.8 9.3 64 1457-1522 1-75 (88)
337 KOG3785 Uncharacterized conser 97.2 0.034 7.5E-07 64.8 20.2 206 1655-1877 71-310 (557)
338 KOG4234 TPR repeat-containing 97.1 0.016 3.5E-07 62.8 15.9 99 1683-1783 103-202 (271)
339 PRK12327 nusA transcription el 97.1 0.0014 3.1E-08 79.9 9.2 122 715-850 84-211 (362)
340 KOG0543 FKBP-type peptidyl-pro 97.1 0.0089 1.9E-07 72.1 15.3 141 1682-1849 215-357 (397)
341 PRK05054 exoribonuclease II; P 97.0 0.0015 3.3E-08 86.8 9.5 72 1456-1527 558-643 (644)
342 PF13371 TPR_9: Tetratricopept 97.0 0.0029 6.3E-08 59.2 8.6 55 1797-1853 10-64 (73)
343 PF13428 TPR_14: Tetratricopep 97.0 0.0014 2.9E-08 55.0 5.3 42 1819-1860 2-43 (44)
344 COG1729 Uncharacterized protei 97.0 0.013 2.7E-07 67.8 14.8 98 1759-1856 151-253 (262)
345 COG4700 Uncharacterized protei 97.0 0.036 7.9E-07 59.6 16.8 138 1717-1859 92-241 (251)
346 PHA02858 EIF2a-like PKR inhibi 96.9 0.002 4.3E-08 59.7 6.3 69 1366-1436 15-85 (86)
347 PF08311 Mad3_BUB1_I: Mad3/BUB 96.9 0.016 3.5E-07 60.6 14.0 106 1735-1845 4-126 (126)
348 KOG4648 Uncharacterized conser 96.9 0.0028 6E-08 73.2 8.7 107 1754-1862 102-209 (536)
349 COG1096 Predicted RNA-binding 96.9 0.0068 1.5E-07 65.4 10.8 75 1452-1529 59-142 (188)
350 PF13371 TPR_9: Tetratricopept 96.8 0.0041 8.9E-08 58.2 8.1 62 1825-1888 2-63 (73)
351 COG4105 ComL DNA uptake lipopr 96.8 0.16 3.4E-06 58.5 21.9 190 1674-1887 33-237 (254)
352 KOG1585 Protein required for f 96.8 0.13 2.8E-06 57.8 20.2 140 1757-1913 99-251 (308)
353 PRK15331 chaperone protein Sic 96.8 0.046 1E-06 58.8 16.2 97 1752-1851 40-137 (165)
354 PF10447 EXOSC1: Exosome compo 96.8 0.0032 6.9E-08 59.7 6.7 61 1456-1516 3-82 (82)
355 PF13512 TPR_18: Tetratricopep 96.8 0.02 4.4E-07 60.2 13.2 100 1753-1852 14-133 (142)
356 cd04462 S1_RNAPII_Rpb7 S1_RNAP 96.7 0.008 1.7E-07 58.5 8.7 63 1367-1430 1-74 (88)
357 PRK15331 chaperone protein Sic 96.6 0.024 5.2E-07 61.0 12.6 94 1785-1880 39-133 (165)
358 KOG3081 Vesicle coat complex C 96.6 0.2 4.4E-06 57.3 20.3 173 1665-1851 97-275 (299)
359 COG4785 NlpI Lipoprotein NlpI, 96.6 0.064 1.4E-06 59.0 15.7 104 1733-1839 82-187 (297)
360 COG3898 Uncharacterized membra 96.6 0.72 1.6E-05 55.2 25.0 217 1656-1880 169-391 (531)
361 COG1107 Archaea-specific RecJ- 96.5 0.0064 1.4E-07 75.0 8.5 72 1451-1529 116-187 (715)
362 PTZ00162 DNA-directed RNA poly 96.5 0.011 2.3E-07 65.4 9.5 77 1456-1534 80-170 (176)
363 PF12688 TPR_5: Tetratrico pep 96.5 0.046 9.9E-07 56.5 13.2 95 1752-1846 4-103 (120)
364 KOG2916 Translation initiation 96.5 0.0022 4.8E-08 71.4 3.7 74 1456-1529 15-89 (304)
365 COG1107 Archaea-specific RecJ- 96.4 0.016 3.5E-07 71.6 10.8 155 754-937 115-281 (715)
366 COG4105 ComL DNA uptake lipopr 96.4 0.32 7E-06 56.0 20.3 156 1752-1909 37-224 (254)
367 PF13509 S1_2: S1 domain; PDB: 96.3 0.014 3E-07 52.6 7.5 61 585-655 1-61 (61)
368 PF13512 TPR_18: Tetratricopep 96.3 0.062 1.4E-06 56.6 13.2 74 1781-1854 8-83 (142)
369 TIGR02062 RNase_B exoribonucle 96.3 0.0079 1.7E-07 79.9 8.4 71 1456-1526 554-638 (639)
370 KOG4555 TPR repeat-containing 96.3 0.06 1.3E-06 54.6 12.1 91 1758-1848 52-145 (175)
371 COG1097 RRP4 RNA-binding prote 96.3 0.021 4.6E-07 64.4 10.0 73 1366-1439 63-139 (239)
372 COG1729 Uncharacterized protei 96.2 0.043 9.3E-07 63.5 12.6 88 1793-1880 151-243 (262)
373 COG0557 VacB Exoribonuclease R 96.2 0.0087 1.9E-07 81.0 8.3 76 1452-1527 617-703 (706)
374 KOG4234 TPR repeat-containing 96.2 0.041 8.8E-07 59.8 11.4 76 1785-1862 136-212 (271)
375 KOG1856 Transcription elongati 96.2 0.0043 9.3E-08 81.8 4.7 78 758-835 982-1062(1299)
376 PF13428 TPR_14: Tetratricopep 96.1 0.013 2.9E-07 49.0 5.9 42 1750-1791 2-43 (44)
377 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.038 8.1E-07 68.4 12.0 69 1780-1848 72-142 (453)
378 cd05790 S1_Rrp40 S1_Rrp40: Rrp 96.1 0.031 6.6E-07 53.8 8.9 72 1366-1439 5-76 (86)
379 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.11 2.4E-06 64.4 15.3 62 1750-1811 76-141 (453)
380 PF10447 EXOSC1: Exosome compo 95.9 0.019 4.1E-07 54.6 6.6 60 1258-1319 3-82 (82)
381 KOG1586 Protein required for f 95.9 1 2.3E-05 50.7 20.6 130 1750-1880 75-223 (288)
382 KOG4555 TPR repeat-containing 95.9 0.087 1.9E-06 53.5 11.1 90 1790-1881 50-144 (175)
383 KOG3081 Vesicle coat complex C 95.8 0.46 1E-05 54.5 18.0 147 1732-1888 124-276 (299)
384 KOG1941 Acetylcholine receptor 95.8 0.27 5.8E-06 58.0 16.5 161 1714-1880 80-274 (518)
385 smart00777 Mad3_BUB1_I Mad3/BU 95.8 0.079 1.7E-06 54.9 11.1 106 1802-1914 5-124 (125)
386 TIGR00757 RNaseEG ribonuclease 95.8 0.019 4E-07 72.0 7.8 71 1454-1525 22-106 (414)
387 cd05790 S1_Rrp40 S1_Rrp40: Rrp 95.8 0.047 1E-06 52.5 8.6 71 1259-1336 6-76 (86)
388 KOG2916 Translation initiation 95.8 0.011 2.4E-07 66.2 4.9 90 761-852 16-107 (304)
389 smart00386 HAT HAT (Half-A-TPR 95.8 0.014 3E-07 44.9 4.2 32 1832-1863 1-32 (33)
390 KOG2053 Mitochondrial inherita 95.7 2.5 5.4E-05 56.0 26.1 218 1687-1915 21-252 (932)
391 PRK12328 nusA transcription el 95.7 0.032 7E-07 67.7 9.0 106 542-655 90-205 (374)
392 KOG1941 Acetylcholine receptor 95.7 0.66 1.4E-05 55.0 18.8 172 1750-1921 84-278 (518)
393 PRK12328 nusA transcription el 95.6 0.04 8.7E-07 66.9 9.4 70 1259-1336 138-207 (374)
394 KOG4340 Uncharacterized conser 95.6 0.38 8.3E-06 55.3 16.0 130 1751-1880 46-210 (459)
395 COG1097 RRP4 RNA-binding prote 95.6 0.21 4.5E-06 56.6 13.9 103 542-656 29-138 (239)
396 PF13509 S1_2: S1 domain; PDB: 95.5 0.047 1E-06 49.2 7.3 61 1259-1334 1-61 (61)
397 PF13431 TPR_17: Tetratricopep 95.5 0.016 3.5E-07 45.5 3.7 33 1664-1696 2-34 (34)
398 PF06552 TOM20_plant: Plant sp 95.5 0.096 2.1E-06 56.9 10.5 90 1765-1856 7-118 (186)
399 smart00777 Mad3_BUB1_I Mad3/BU 95.5 0.17 3.6E-06 52.5 11.9 89 1749-1842 22-123 (125)
400 KOG1856 Transcription elongati 95.5 0.015 3.1E-07 77.1 5.1 79 1363-1441 981-1062(1299)
401 TIGR00757 RNaseEG ribonuclease 95.3 0.036 7.8E-07 69.5 7.9 60 1365-1424 23-96 (414)
402 PF08631 SPO22: Meiosis protei 95.3 6 0.00013 47.7 26.6 227 1686-1917 4-274 (278)
403 PRK05054 exoribonuclease II; P 95.3 0.047 1E-06 72.9 9.3 69 1368-1436 562-643 (644)
404 KOG1464 COP9 signalosome, subu 95.2 0.8 1.7E-05 52.1 16.9 205 1657-1866 43-286 (440)
405 KOG3616 Selective LIM binding 95.2 1.8 3.9E-05 55.0 21.2 151 1750-1912 662-847 (1636)
406 PF13424 TPR_12: Tetratricopep 95.1 0.048 1E-06 51.7 6.3 62 1819-1880 6-74 (78)
407 PF02259 FAT: FAT domain; Int 95.1 3.3 7.2E-05 51.5 24.5 119 1780-1901 143-304 (352)
408 PTZ00162 DNA-directed RNA poly 95.0 0.066 1.4E-06 59.2 8.0 73 1366-1439 80-166 (176)
409 COG4785 NlpI Lipoprotein NlpI, 95.0 0.34 7.4E-06 53.6 12.9 125 1751-1880 67-195 (297)
410 KOG2041 WD40 repeat protein [G 95.0 0.89 1.9E-05 57.6 18.0 185 1668-1877 686-877 (1189)
411 KOG1464 COP9 signalosome, subu 94.8 0.64 1.4E-05 52.8 14.7 152 1731-1882 42-221 (440)
412 COG1096 Predicted RNA-binding 94.8 0.24 5.2E-06 53.9 11.0 103 542-655 26-141 (188)
413 PF03704 BTAD: Bacterial trans 94.8 0.45 9.8E-06 51.2 13.7 104 1758-1880 15-124 (146)
414 PF06552 TOM20_plant: Plant sp 94.7 0.32 6.9E-06 53.0 11.8 95 1798-1898 7-122 (186)
415 PRK12329 nusA transcription el 94.7 0.12 2.6E-06 63.8 9.6 69 1259-1336 152-226 (449)
416 PF02184 HAT: HAT (Half-A-TPR) 94.6 0.037 8.1E-07 42.1 3.1 30 1867-1900 2-31 (32)
417 COG3118 Thioredoxin domain-con 94.5 1.7 3.6E-05 51.2 17.6 143 1759-1907 144-290 (304)
418 PF13424 TPR_12: Tetratricopep 94.4 0.18 3.9E-06 47.7 8.3 64 1784-1847 6-75 (78)
419 PF04184 ST7: ST7 protein; In 94.3 1.6 3.5E-05 54.4 17.8 183 1687-1889 180-381 (539)
420 TIGR02062 RNase_B exoribonucle 94.3 0.1 2.2E-06 69.6 8.4 68 762-829 558-638 (639)
421 PRK12329 nusA transcription el 94.2 0.15 3.2E-06 63.0 8.9 107 542-655 102-224 (449)
422 PF04184 ST7: ST7 protein; In 94.1 2.6 5.7E-05 52.7 19.0 172 1733-1918 185-375 (539)
423 KOG2471 TPR repeat-containing 94.0 3.3 7.3E-05 51.1 19.3 122 1672-1795 237-381 (696)
424 KOG1586 Protein required for f 94.0 2.5 5.4E-05 47.8 16.8 123 1731-1853 88-230 (288)
425 KOG2610 Uncharacterized conser 94.0 1.3 2.8E-05 52.1 15.1 151 1654-1809 116-274 (491)
426 PF02259 FAT: FAT domain; Int 93.9 3.3 7.2E-05 51.5 20.7 190 1672-1865 68-305 (352)
427 KOG2796 Uncharacterized conser 93.9 1.8 3.9E-05 49.4 15.7 132 1679-1816 181-320 (366)
428 COG3118 Thioredoxin domain-con 93.9 1.6 3.4E-05 51.4 15.8 120 1654-1780 147-267 (304)
429 KOG4648 Uncharacterized conser 93.7 0.22 4.8E-06 58.2 8.5 106 1788-1898 102-208 (536)
430 COG0557 VacB Exoribonuclease R 93.7 0.16 3.5E-06 68.9 9.0 74 1364-1437 619-704 (706)
431 PF13431 TPR_17: Tetratricopep 93.7 0.073 1.6E-06 41.8 3.3 32 1841-1872 2-33 (34)
432 PF10300 DUF3808: Protein of u 93.6 2.3 5E-05 55.1 18.8 162 1754-1921 193-379 (468)
433 PF02184 HAT: HAT (Half-A-TPR) 93.6 0.099 2.1E-06 39.9 3.6 30 1833-1863 2-31 (32)
434 PF10300 DUF3808: Protein of u 93.2 2.3 5E-05 55.1 17.9 149 1731-1880 203-375 (468)
435 PF07719 TPR_2: Tetratricopept 93.0 0.22 4.7E-06 38.7 5.2 33 1819-1851 2-34 (34)
436 PF13281 DUF4071: Domain of un 92.9 9.4 0.0002 47.3 21.2 146 1733-1881 158-334 (374)
437 smart00386 HAT HAT (Half-A-TPR 92.8 0.18 3.9E-06 38.6 4.4 30 1764-1793 2-31 (33)
438 KOG4340 Uncharacterized conser 92.8 3.2 6.9E-05 48.2 15.6 93 1750-1842 145-265 (459)
439 KOG2796 Uncharacterized conser 91.7 18 0.0004 41.7 19.7 130 1751-1880 179-314 (366)
440 PF03704 BTAD: Bacterial trans 91.3 3.8 8.2E-05 44.0 14.1 69 1852-1923 62-130 (146)
441 KOG1585 Protein required for f 91.2 9.8 0.00021 43.5 16.8 127 1750-1877 32-175 (308)
442 KOG0530 Protein farnesyltransf 91.0 5.7 0.00012 45.8 14.9 189 1704-1901 35-233 (318)
443 KOG4642 Chaperone-dependent E3 90.9 1.6 3.5E-05 49.4 10.5 101 1760-1862 21-127 (284)
444 PRK10811 rne ribonuclease E; R 90.8 0.48 1E-05 63.3 7.5 64 1259-1322 38-110 (1068)
445 PF10345 Cohesin_load: Cohesin 90.8 16 0.00035 49.2 22.3 179 1693-1874 39-247 (608)
446 KOG3616 Selective LIM binding 90.6 8 0.00017 49.6 17.0 145 1752-1920 768-913 (1636)
447 PF13174 TPR_6: Tetratricopept 90.5 0.4 8.8E-06 36.8 4.1 32 1820-1851 2-33 (33)
448 PRK10811 rne ribonuclease E; R 90.4 0.59 1.3E-05 62.5 7.6 73 1366-1438 37-120 (1068)
449 PF07719 TPR_2: Tetratricopept 90.0 0.68 1.5E-05 35.9 5.0 31 1784-1814 2-33 (34)
450 KOG0890 Protein kinase of the 90.0 50 0.0011 49.2 25.8 230 1673-1909 1627-1911(2382)
451 PF00515 TPR_1: Tetratricopept 90.0 0.56 1.2E-05 36.5 4.5 32 1819-1850 2-33 (34)
452 KOG1538 Uncharacterized conser 89.8 8.3 0.00018 49.1 16.2 207 1678-1915 588-830 (1081)
453 PF04910 Tcf25: Transcriptiona 89.8 10 0.00022 47.3 17.7 172 1663-1851 28-226 (360)
454 KOG2610 Uncharacterized conser 89.5 19 0.0004 42.9 17.7 148 1735-1884 122-279 (491)
455 PF13281 DUF4071: Domain of un 89.0 24 0.00052 43.9 19.5 167 1750-1918 142-334 (374)
456 KOG0545 Aryl-hydrocarbon recep 88.9 9 0.0002 43.7 14.2 67 1750-1816 231-298 (329)
457 PF04910 Tcf25: Transcriptiona 88.8 18 0.00039 45.2 18.8 137 1744-1880 34-221 (360)
458 KOG1130 Predicted G-alpha GTPa 88.6 5.3 0.00012 48.3 12.9 121 1655-1779 31-178 (639)
459 KOG3824 Huntingtin interacting 88.6 2.2 4.7E-05 49.6 9.5 58 1830-1889 128-185 (472)
460 KOG3409 Exosomal 3'-5' exoribo 88.4 1.4 3E-05 47.0 7.2 70 1259-1334 68-147 (193)
461 KOG4642 Chaperone-dependent E3 87.6 4.1 8.9E-05 46.3 10.6 100 1797-1898 25-126 (284)
462 PRK11712 ribonuclease G; Provi 87.5 1.1 2.3E-05 57.6 7.0 62 1259-1320 38-111 (489)
463 PF00515 TPR_1: Tetratricopept 87.3 1.1 2.3E-05 34.9 4.5 31 1784-1814 2-33 (34)
464 KOG2300 Uncharacterized conser 86.5 1E+02 0.0022 38.9 24.4 219 1687-1913 287-551 (629)
465 PF10602 RPN7: 26S proteasome 86.4 10 0.00022 42.4 13.2 100 1750-1849 37-144 (177)
466 PF08631 SPO22: Meiosis protei 86.3 85 0.0018 37.8 22.8 203 1675-1880 35-274 (278)
467 PF13174 TPR_6: Tetratricopept 86.2 1.2 2.7E-05 34.1 4.3 32 1751-1782 2-33 (33)
468 PF11207 DUF2989: Protein of u 86.1 28 0.0006 39.3 16.1 73 1765-1837 122-197 (203)
469 KOG0985 Vesicle coat protein c 85.9 74 0.0016 43.3 21.6 31 1856-1888 1283-1313(1666)
470 PF10246 MRP-S35: Mitochondria 85.8 3.1 6.8E-05 40.8 7.4 60 489-556 15-74 (104)
471 PRK11712 ribonuclease G; Provi 85.7 1.6 3.5E-05 56.0 7.3 59 1366-1424 37-109 (489)
472 KOG0890 Protein kinase of the 85.7 23 0.00049 52.4 18.6 179 1715-1898 1630-1852(2382)
473 KOG2471 TPR repeat-containing 85.5 7.2 0.00016 48.3 12.0 146 1750-1898 207-378 (696)
474 KOG2422 Uncharacterized conser 85.5 21 0.00045 45.7 16.1 144 1667-1813 276-450 (665)
475 KOG1130 Predicted G-alpha GTPa 85.4 13 0.00028 45.2 13.7 129 1733-1861 34-191 (639)
476 KOG0545 Aryl-hydrocarbon recep 84.9 15 0.00032 42.0 13.2 68 1819-1888 231-298 (329)
477 KOG2422 Uncharacterized conser 84.9 18 0.00038 46.3 15.2 99 1819-1920 343-450 (665)
478 PF13181 TPR_8: Tetratricopept 84.9 1.6 3.4E-05 33.9 4.3 31 1819-1849 2-32 (34)
479 COG2909 MalT ATP-dependent tra 84.8 1.2E+02 0.0026 41.3 23.3 179 1675-1866 347-551 (894)
480 PF10602 RPN7: 26S proteasome 84.8 5.1 0.00011 44.7 9.9 100 1676-1779 37-143 (177)
481 KOG3409 Exosomal 3'-5' exoribo 84.8 4 8.6E-05 43.7 8.2 73 1161-1234 66-146 (193)
482 PF08292 RNA_pol_Rbc25: RNA po 84.7 3.4 7.4E-05 42.9 7.8 59 498-556 3-74 (122)
483 KOG3298 DNA-directed RNA polym 84.3 3.6 7.8E-05 43.7 7.6 65 1457-1523 81-156 (170)
484 PF08292 RNA_pol_Rbc25: RNA po 84.2 3.2 6.9E-05 43.1 7.3 60 1367-1426 3-75 (122)
485 PRK12442 translation initiatio 83.3 4.7 0.0001 38.6 7.3 65 1460-1529 8-73 (87)
486 KOG0687 26S proteasome regulat 82.3 26 0.00055 41.9 14.2 115 1733-1850 85-213 (393)
487 KOG0551 Hsp90 co-chaperone CNS 82.3 13 0.00027 44.5 11.8 98 1751-1850 83-185 (390)
488 KOG0985 Vesicle coat protein c 82.3 43 0.00094 45.4 17.5 125 1752-1877 609-749 (1666)
489 KOG3298 DNA-directed RNA polym 82.3 7.2 0.00016 41.6 8.8 60 1367-1427 81-151 (170)
490 COG1747 Uncharacterized N-term 82.1 1.6E+02 0.0034 37.6 21.4 20 1832-1851 219-238 (711)
491 KOG0687 26S proteasome regulat 81.6 72 0.0016 38.3 17.4 176 1716-1915 19-207 (393)
492 COG2909 MalT ATP-dependent tra 81.5 2.2E+02 0.0048 38.9 24.2 237 1674-1912 414-682 (894)
493 COG3629 DnrI DNA-binding trans 81.2 9 0.0002 45.6 10.4 81 1818-1898 153-236 (280)
494 PF10246 MRP-S35: Mitochondria 81.2 4.9 0.00011 39.6 6.7 54 969-1029 22-75 (104)
495 KOG1308 Hsp70-interacting prot 81.1 2.8 6.1E-05 50.0 6.1 125 1647-1778 120-244 (377)
496 KOG1308 Hsp70-interacting prot 81.0 1.2 2.7E-05 52.9 3.2 140 1761-1906 126-267 (377)
497 COG5187 RPN7 26S proteasome re 80.9 1.2E+02 0.0025 35.9 18.4 250 1632-1905 89-355 (412)
498 TIGR00008 infA translation ini 80.6 6.6 0.00014 36.1 7.0 60 1460-1524 6-66 (68)
499 KOG2300 Uncharacterized conser 80.1 1.4E+02 0.0031 37.8 19.8 137 1731-1867 382-540 (629)
500 PF13176 TPR_7: Tetratricopept 79.9 2.9 6.3E-05 33.2 4.1 25 1821-1845 2-26 (36)
No 1
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=100.00 E-value=1.5e-200 Score=1857.82 Aligned_cols=1649 Identities=37% Similarity=0.554 Sum_probs=1329.0
Q ss_pred CCCCCcccchhccccccccCccccccccCCCCCCCCCcCCCCCCCCCCchhhhhhh--hccccccccccccc-----ccc
Q 000176 16 GPKFNKASKNQFKNSKKQINDAVEAQDLALPPDDDVPVFPRGGGHSLTQRERDEIH--AEVDAEFEAVERGL-----HKK 88 (1924)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~fpRGg~~~lt~~e~~~~~--~~~d~lf~~~~~~~-----~k~ 88 (1924)
+++..+++.+|+++ ....+.++...+..++.+++|||||+|.|||+|+++.. +..|.+|+....+. .++
T Consensus 4 ~~k~~~d~~~p~sk----edS~~~~s~~~l~~~t~~~~fprgg~s~lt~~e~~kv~~E~~~e~l~~~~~vke~~~~~~~~ 79 (1710)
T KOG1070|consen 4 STKRKRDNPKPLSK----EDSTKVGSKSSLKRKTAAPDFPRGGASKLTPLEIEKVEEEAFIEGLTGFGVVKEVFDDGRPK 79 (1710)
T ss_pred cccCCCCCCCCCcc----cccccccccccccccccccccccccccccChHHHHHHHHHHHhhhhhcccceecccCCCCcc
Confidence 33444556666763 33333333344577788999999999999999999994 44555665332110 111
Q ss_pred cccccccccccccccccccCCccCCCcCCCCCceeeccccCCcCcccEEEEEEEEEecccEEEEcCCCcEEEEeccccCc
Q 000176 89 NKKKKKKTERKANETVDDLGSLFGDGISGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALD 168 (1924)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~k~l~~G~~~lg~V~~i~~~~l~vslp~~l~g~v~~~~is~ 168 (1924)
++..++...+-... . .+..++.+ +..+++++|++++|||++||+|++|+..|+.+|+|++|+|||+.|+||+
T Consensus 80 ~k~vk~~~s~~s~~--~---~~~~~~~k---~~~~~~~~~k~isPG~~llgvIs~i~~~Dl~isv~~~l~g~v~~t~lS~ 151 (1710)
T KOG1070|consen 80 KKTVKKSASKVSKK--F---TENFNEEK---PEIINAFQLKNISPGMLLLGVISKINGNDLKISVKGGLNGYVLNTHLSD 151 (1710)
T ss_pred ccccccchhhHHHh--h---hccccccc---hhhhhhccccccCCcceeeeeeeeccccceeEEccCcccccccccccCH
Confidence 11111111110000 0 00111111 5568999999999999999999999999999999999999999999998
Q ss_pred hhhccccccccCCCCCCcccCCCEEEEEEEEeecCccccceeEEEEEechhhhccCCCcccccCCcEEEEEEeeeeceeE
Q 000176 169 PILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY 248 (1924)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~f~~Gq~v~~~V~~~~~~~~~~~~~~i~LSl~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ 248 (1924)
.+ +.+||.|.++|.|+||||+
T Consensus 152 ~~-----------------------------------------------------------~~~~~~l~~~v~S~ed~g~ 172 (1710)
T KOG1070|consen 152 EM-----------------------------------------------------------LAAGEVLDTAVVSIEDHGA 172 (1710)
T ss_pred hH-----------------------------------------------------------hhhhhhhcccccccccccc
Confidence 73 2358899999999999999
Q ss_pred EEEecCCcceeeccCCCCCCCCCCccCCCcEEEEEEEEEcCCCcEEEEccCccccccccccCcccccccccCCCceEEEE
Q 000176 249 ILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTR 328 (1924)
Q Consensus 249 ild~Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~v~~~~~~~~~v~ls~~~~~~~~~~~~~~~~~~~~~l~pG~~v~~~ 328 (1924)
++|+|++..+||+.+.++++. +..|++||++.|+|++++. +.+++|..+..+.+..++..++++++.|+|||+|+|.
T Consensus 173 ~l~~g~~~~~~~~e~~q~pn~-~~~lKvGq~l~~~V~k~~s--~~v~ks~~~~~~~t~~~t~~~~~~~~~LvpGt~vqa~ 249 (1710)
T KOG1070|consen 173 ILDVGLDEITGFIEKSQFPNL-GAKLKVGQWLRVSVTKSTS--ERVVKSTKFVEVLTLNPTSCNGLALNDLVPGTMVQAE 249 (1710)
T ss_pred chhcCCccccchhhhccCchh-hhhcccCceEEEEEEeccC--ceEEecccceeeecccchhccccchhhcCCcceEEEE
Confidence 999999999999999887632 3479999999999999886 4888999888888888888899999999999999999
Q ss_pred EEEEecCeEEEEecCceEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeCccccccCCCCCCCCCC
Q 000176 329 VQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVG 408 (1924)
Q Consensus 329 V~~v~~~Gl~v~~~~~~~g~v~~~hl~~~~~~~~~~~~~~~G~~v~arVl~~~~~~k~v~lSl~p~~~~~~~~~~~~~~G 408 (1924)
|++|++||+.++|+++|+|+++..||.+++ .|..||...|.|+ ++..| ...+
T Consensus 250 V~sv~~~Gi~~dil~~ftG~l~~~hl~~~~-------~~~~~~~~l~~vi--~~s~R-------------------v~~~ 301 (1710)
T KOG1070|consen 250 VQSVEDHGITLDILNGFTGFLDKKHLPPFL-------RYFENQEKLGKVI--HKSDR-------------------VFVV 301 (1710)
T ss_pred ecceecCcEEEEecccccceeehhhCCchh-------hccccHHHhhccc--chhhh-------------------eeee
Confidence 999999999999999999999999998764 4888998888863 22222 2224
Q ss_pred CeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEeecCCeEEEEeecccccc
Q 000176 409 DIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG 488 (1924)
Q Consensus 409 ~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~k~~~~~~ 488 (1924)
+.++.+....+... |+..-++.. .+. +-. ...++.|..|+|||+++..+|.+...+++.+.++.
T Consensus 302 ~f~~ka~ki~~l~~-~v~ai~p~~-----------~~~---~~~-~e~~k~G~~~K~~vi~~~~~~~~~~~tl~~s~ie~ 365 (1710)
T KOG1070|consen 302 DFFDKASKILVLKA-GVDAIAPSR-----------IEK---VLS-FEIFKIGNKVKCRVIDVLQMDSLALFTLKESAIEG 365 (1710)
T ss_pred chhhccceEEEecC-ccceEccCC-----------ccc---ccc-hhhcccCceEEEEEEEEeeccceEEeecchhhccC
Confidence 44444444444443 444444321 111 011 12599999999999999999999999999999999
Q ss_pred cccccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEEeCCeEEEEEccc
Q 000176 489 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKT 568 (1924)
Q Consensus 489 ~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v~~~~l~lT~K~~ 568 (1924)
+++++.++.||.++.+.+ ++.++ ..|++|..|++++...+|+.+|..|..|.||||.+..+++.+|+| .
T Consensus 366 k~~~~s~V~~r~l~~~~~-svdt~---------~~~l~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~-v 434 (1710)
T KOG1070|consen 366 KFSLVSDVSPRGLLKKPV-SVDTE---------EVGLSPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLK-V 434 (1710)
T ss_pred ceEEEeccCCceEEEecc-cCChh---------hhhccccchhhceeecCCCcccccccceeeEEeeccceeeeeeee-e
Confidence 999999999999999998 76664 679999999999999999999999999999999999899999999 9
Q ss_pred cccchhhHhhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCC
Q 000176 569 LVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR 648 (1924)
Q Consensus 569 Lv~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ 648 (1924)
|..+++|.++.|.++.+ .++|+|.++. .|++|+-+++.....+|-..|.+|+++.|++.. .
T Consensus 435 ~~~sK~pvis~y~~~~~--~t~~~l~~v~------------q~~v~~~e~~te~~~rv~~v~~v~~v~~v~~~~-----s 495 (1710)
T KOG1070|consen 435 LCVSKLPVISMYADAVK--LTHGMLSKVP------------QGMVPIYEVGTEVKSRVWQVFYVGKVVIVSVRE-----S 495 (1710)
T ss_pred eEeecCcceEEEeeccc--cCcchhhccc------------cCCCCceecCCcccCccceecccCcEEEEEEeh-----H
Confidence 99999999999998877 7888888776 788888777777666777777777777776652 2
Q ss_pred EEEEEEeeCCCCcccccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhccccCCCCeEeeEE
Q 000176 649 RINLSFMMKPTRVSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLL 728 (1924)
Q Consensus 649 ri~lS~k~~~~~~~~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~~~~~G~~i~~vl 728 (1924)
.+.+.+ ....++++|++|+|+|.+++++|+.|.+. .+++.|+||..||+|++.+.+....++..|.++ |||
T Consensus 496 vl~lk~-------~~~nDI~iG~~V~~~I~~vt~~Gv~v~v~-~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~-RVl 566 (1710)
T KOG1070|consen 496 VLGLKF-------LRVNDIEIGQLVPGVIRKVTPQGVEVLVT-FGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKL-RVL 566 (1710)
T ss_pred hhcccc-------cccccccccceeeeEEEEecCCcEEEEEe-cCceeeecChHhhhhcccccccceeeeccccEE-EEE
Confidence 333333 23456999999999999999999999996 367999999999999999999988888888888 899
Q ss_pred EeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCC
Q 000176 729 VLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYV 808 (1924)
Q Consensus 729 ~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~ 808 (1924)
+++.+.+++.||+|++|++-..++|.+|+++++|+++.|+|+++.++||||+|+||++||+|.+++++.|+.+++++|.+
T Consensus 567 ~~~~~~~~v~l~~K~slv~~~~plp~d~~~~~pg~~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~v 646 (1710)
T KOG1070|consen 567 SVNRDRNRVALTLKKSLVNTQLPLPSDFEQAIPGKITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPV 646 (1710)
T ss_pred EEEccCCeeEEEechhhhcccCCCccchhhcCCCceEEEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhccc
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEEeeCCCCeEEEeecccccCCCchhhHHHHHHHHHHHHHhhcccCCCccccccccccCccEEEEEEEEEecc
Q 000176 809 GQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDF 888 (1924)
Q Consensus 809 Gq~V~~~V~~id~~~~r~~lSlk~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~~~ 888 (1924)
||||.|+|+++|++++||.|+++.+.|+.++..+..+| +..|.+..+.+.+++.+
T Consensus 647 GqTv~~~i~nvd~ek~rm~l~~r~s~~~~a~~~~~~e~-------------------------~~~g~v~s~~~~~~tkd 701 (1710)
T KOG1070|consen 647 GQTVRAKIVNVDDEKRRMPLGLRASSCARACVKRSVEN-------------------------FVKGGVKSLKSIDKTKD 701 (1710)
T ss_pred ccEEEEEEEecCchhceeehhhhhhhhHHHHHHHHHHH-------------------------hhccccccceeehhccc
Confidence 99999999999999999999999998865444333333 33455555566666666
Q ss_pred eeEEEeccCCceeEEEeeeecCCc-------------------ccccCCeEEEEEEEeeccccEEEEeechhhhhhhhhc
Q 000176 889 GVVVSFEEHSDVYGFITHHQLAGA-------------------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREA 949 (1924)
Q Consensus 889 g~~v~l~~~~~v~g~i~~~~l~~~-------------------~~~~G~~v~~~Vl~vd~~~~~v~ls~k~~l~~~~~~~ 949 (1924)
.++|.+.+. +++|++...||.|+ -+.+|+.+.++|+.++..++.|.+++++.|...+
T Consensus 702 ~viVei~~~-~~~~v~~~~~L~dg~v~~~~~~~~kl~~~t~~~~lv~gq~~~~~i~~isl~k~lv~~s~~~~L~~~~--- 777 (1710)
T KOG1070|consen 702 SVIVEIVDQ-GITGVGVFGELVDGSVVVNKVLENKLRKNTSLLHLVVGQVTVGVILSISLKKSLVLISLCTDLPNNA--- 777 (1710)
T ss_pred cEEEEccCc-ceEEEEEEEEEccCceEEccchhhhhhhcchhheeeecceeEEEEEEeehhhhhhhccccccccchH---
Confidence 666666654 56777777777652 2688999999999999999999999998887653
Q ss_pred chhhHHhHhhhhhccccccCCCcEEEEEEEEEeeeEEEEEecCCcceEEEEeeecCC-CCCCCcccccCCCeEEEEEecc
Q 000176 950 NSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMAL 1028 (1924)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~-~~~~~~~~f~~Gq~v~~~V~~~ 1028 (1924)
.+|..|....|+|++|..++.|++|. ++++++++.+|.+ ....+......||++.+.+..+
T Consensus 778 ----------------~~l~k~~~~~~~v~~is~~~~~~a~~--~~~i~~v~~s~~v~s~~~d~~~~~y~Q~v~~~~~st 839 (1710)
T KOG1070|consen 778 ----------------TKLLKGSYALALVRSISKEGKFVAFV--SNLIALVKVSHLVDSELDDLTKAEYGQSVTVKLLST 839 (1710)
T ss_pred ----------------HHHhcCchhHHHHHhhhhheeheeec--ccccceeeccccccccccccceeeeecccceEEEec
Confidence 24777888899999999999999995 5599999999986 5555677777889999999987
Q ss_pred CCCCccchhhhhhhh------------cc-ccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEccc
Q 000176 1029 PSSSTAGRLLLLLKA------------IS-ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITE 1095 (1924)
Q Consensus 1029 ~~~~~~~~~~l~~~~------------~~-~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~V~l~~~~~G~i~~~e 1095 (1924)
+ +...+. ++.... .+ ..+-....+.+..+++.+|.++.|+|++|+++||+|.++.+.+||||++|
T Consensus 840 ~-~~~~~~-~~a~e~p~~K~~~~~~~~~~~~~d~~Vd~a~k~~~~~~igsiv~a~v~svKp~~L~v~l~~~~~gri~ise 917 (1710)
T KOG1070|consen 840 E-PKVVKD-LKAVEKPKKKKEKKFIKVSSNDSDNEVDLAIKSTEDLSIGSIVRAYVKSVKPDQLNVLLAANHHGRIHISE 917 (1710)
T ss_pred C-hhHHHH-HHhhcchhhccceeEEEeccccCCCccccccccccceeeeeEEEEEEeeecccceEEeccccccCceehHH
Confidence 6 222211 111100 00 11111223456678999999999999999999999999999999999999
Q ss_pred ccCCccccccccccccCCCCEEEEEEEeee-cC----C-CCccceeEEEeeccccccccccccccccccccCCCCCEEEE
Q 000176 1096 VNDDKSNVVENLFSNFKIGQTVTARIIAKS-NK----P-DMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTG 1169 (1924)
Q Consensus 1096 ~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~-~~----~-~~~~~~~~eLS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g 1169 (1924)
++|+..++ ..|+++|++|+.|.|||+|.| .+ + ...+..++|||+||+.++.... . +-+..+++.||.++|
T Consensus 918 v~d~~~ei-tDp~~k~~vG~~I~vrviG~~D~k~lpith~i~k~~v~ElSvkps~les~~~-~--t~s~~q~~~gq~vtG 993 (1710)
T KOG1070|consen 918 VLDNLHEI-TDPLDKFKVGDGIFVRVIGGHDVKDLPITHLISKEQVLELSVKPSELESDEF-N--TTSTKQFKAGQEVTG 993 (1710)
T ss_pred hhcccccc-CChhhhcccCCeEEEEEEcCCccccCccccccchhhhhhhccChhhhccccc-c--ccchhhhhcCCeEEE
Confidence 99988765 449999999999999999996 11 1 2234689999999999984431 1 111125799999999
Q ss_pred EEEEEECCeEEEEeCCCeEEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEeccccccccccccccc
Q 000176 1170 YVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDIS 1249 (1924)
Q Consensus 1170 ~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~~~~~~~~~~~ 1249 (1924)
||+++..+|+|+.++|.++||||+.+++.+...+++|+..|++|++++++|++.+...-...++.... .
T Consensus 994 fV~nv~ke~~w~~isp~v~~RIplld~s~~~~~le~~e~~F~~g~al~~~V~~~~~~~tv~~iG~~~~-----------~ 1062 (1710)
T KOG1070|consen 994 FVNNVSKEWLWVRISPFVDGRIPLLDTSLDLHVLELPESLFPLGKALDEYVVRNDKSKTVRAIGFSKS-----------D 1062 (1710)
T ss_pred EEEccccceeEEEccccccceeeeeeccchhhhhhCchhhcccccceeeEEecccceeEEEecccccC-----------C
Confidence 99999999999999999999999999998888899999999999999999999873222222222211 1
Q ss_pred ccccccccCCCCEEEEEEEEEecCcCeEEEEeCCceEEEEecc-cccccccCCCCCCCCCCCEEEEEEEEEecccCCceE
Q 000176 1250 NDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT-ELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328 (1924)
Q Consensus 1250 ~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~s-elsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~ 1328 (1924)
... .+|++..|+|.++.++ ++.++++++..|.++.. +++++|..+|...|..++.+.+++|.++.. ++.
T Consensus 1063 k~~-----s~G~~l~Grv~kv~~~--~~~l~~~~~~~G~~~~i~~~~d~~~~~P~~~f~~~~~v~~~~L~vs~~---n~~ 1132 (1710)
T KOG1070|consen 1063 KNP-----SPGDILFGRVSKVLPG--YLILQLPFKVFGRVSFIEDMSDSYSMTPVEHFTKIQIVYVCVLSVSAL---NKG 1132 (1710)
T ss_pred CCC-----Ccchhhcceeeeeccc--eeEEecCCccccceEEeeehhccccCChHHhcccccEEEEEEEEEecc---ccc
Confidence 111 2899999999999999 89999999999977755 999999999999999999999999999976 455
Q ss_pred EEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCC
Q 000176 1329 VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP 1408 (1924)
Q Consensus 1329 i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~ 1408 (1924)
+.||+|.++.++.+ ....++.+++++|+++|++++|||+++.+.|+|+.|++++.||++++++++.+.+.|
T Consensus 1133 leLslr~sr~~~t~---------~~~kd~~iks~eDlk~g~iv~G~V~nv~~~glfi~ls~~v~a~v~is~~~ds~~k~w 1203 (1710)
T KOG1070|consen 1133 LELSLRESRTKITP---------VDSKDGSIKSIEDLKIGDIVRGFVKNVETKGLFIALSRKVEAFVPISGLSDSFEKEW 1203 (1710)
T ss_pred ceeecccccccCcc---------ccccCCcccchhhcccCceeEEEEEEecCCcEEEEEccceEEEEEccccccchhhhh
Confidence 99999998843322 234677899999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCcEEEEEEEEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecC-ceeEEee
Q 000176 1409 EKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCH 1487 (1924)
Q Consensus 1409 ~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h 1487 (1924)
++.|++|++|.++|++++...+|++||||++....... ....+.++++||...|+|.++.+||+||+++++ ++.|+||
T Consensus 1204 ~k~~~~gklv~~rv~~ve~~s~riel~Lk~s~~~d~~~-~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~ 1282 (1710)
T KOG1070|consen 1204 EKHLPVGKLVTGRVLSVEEDSKRIELSLKNSDIKDTVK-LLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCH 1282 (1710)
T ss_pred hccCCccceeeeEEEEeeccCceEEEEEeccccCCchh-hhhhhhhhhccccccceEEEecCCceEEEecCcceeccccc
Confidence 99999999999999999999999999999988753222 344578999999999999999999999999987 5899999
Q ss_pred ccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccccccCCCcccccCCcccchhHHHHhhcccCcccccccCc
Q 000176 1488 VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSS 1567 (1924)
Q Consensus 1488 ~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1567 (1924)
++++++.+.++....|..|+.|+|.+++++.+++||++++|.+|+..+++....+..++.-+. +.+..+.....+...
T Consensus 1283 ~~e~~d~~~e~it~~~~~~~~V~a~~lk~~~ek~rIsl~~k~s~~~~~dd~~~~~~~~e~v~~--~~~~~~d~~s~~~~~ 1360 (1710)
T KOG1070|consen 1283 ISEEADDRGENITALYYAGDRVKACVLKEDSEKKRISLGLKSSYLSSEDDARITSYGEEGVEM--EEESHSDPKSMEEVA 1360 (1710)
T ss_pred ceeecchhhhhcccceeccceeeeEeeeccchhhhhhhhhhhhccCChhhhhcccccccCcch--hcccccCccchhhhc
Confidence 999999999999999999999999999999999999999999999664422211100000000 000000000000000
Q ss_pred cccccccccccCC-C-cccccccccccCCCCc-cc-cCCCCCCCcCcCCCCCCCCccchhhhhhhhhhhhhhHHHHHHHH
Q 000176 1568 VAVQDMDMESEDG-G-SLVLAQIESRASVPPL-EV-NLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQ 1643 (1924)
Q Consensus 1568 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~e~ 1643 (1924)
.+|-+ .+ ++. . .-....++.....+++ +- .|++++.|+.-++.+ .++|+.+ ++++..+++.|.
T Consensus 1361 ~~d~g--~q-~~~~g~~~e~~~d~~~~~~p~~le~s~~td~e~d~~~~~~e--~~qde~d--------ee~e~~kee~e~ 1427 (1710)
T KOG1070|consen 1361 AEDPG--FQ-SSSGGFNLEDAVDEMSETLPDALEDSCETDSEVDEEVEDEE--LDQDEKD--------EEKEKDKEEREE 1427 (1710)
T ss_pred ccCCC--cc-ccccceehhhhhhhccccCCchhhhcccchhhhhhcccccc--ccccccc--------hhhhhhhhhccc
Confidence 00000 00 000 0 0000001111111221 11 255544332111111 1111000 111112223334
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Q 000176 1644 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1723 (1924)
Q Consensus 1644 ~~~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~l 1723 (1924)
....+++.++. +.|++.++|+|+++.+||++.+|++||+|+++.+++++||++++|||.+|++||+.|++|+|+||+||
T Consensus 1428 ~~~~~e~~dl~-~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNl 1506 (1710)
T KOG1070|consen 1428 NRSDEEERDLS-RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNL 1506 (1710)
T ss_pred cccchhhcccc-cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH
Confidence 44455555545 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHH
Q 000176 1724 ENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQ 1802 (1924)
Q Consensus 1724 e~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~ 1802 (1924)
|+.|| ++++..++|+||||+|++..+|.+|+.+|+..+++++|.++|+.|+++|++..++|..|++|++++ +.++|+
T Consensus 1507 En~yG--~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1507 ENAYG--TEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HHhhC--cHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHH
Confidence 99999 789999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 000176 1803 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882 (1924)
Q Consensus 1803 ~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~ 1882 (1924)
.+++|||+++|.++|++++.+||++||++||.||||++||..|..||+|.|+|+.|+++++++|+.+.+|.+|||+++++
T Consensus 1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000176 1883 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923 (1924)
Q Consensus 1883 ~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~~ 1923 (1924)
+++++|++||++|++||.++||.+.++.|++||++||++..
T Consensus 1665 l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1665 LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESIK 1705 (1710)
T ss_pred CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999853
No 2
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=100.00 E-value=2.7e-108 Score=1028.65 Aligned_cols=1478 Identities=21% Similarity=0.240 Sum_probs=1102.3
Q ss_pred eeeccccCCcCcccEEEEEEEEEecccEEEEcC-CCcEEEEeccccCchhhccccccccCCCCCCcccCCCEEEEEEEEe
Q 000176 122 YANKITLKNISAGMKLWGVVAEVNEKDLVICLP-GGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQL 200 (1924)
Q Consensus 122 ~~e~l~~k~l~~G~~~lg~V~~i~~~~l~vslp-~~l~g~v~~~~is~~~~~~~~~~~~~~~l~~~f~~Gq~v~~~V~~~ 200 (1924)
...+||-..+.+||.+-+.|.++.+++.++..- ..++|++-. |+ ..+|.++|++||||||+|++.
T Consensus 145 ~~t~lS~~~~~~~~~l~~~v~S~ed~g~~l~~g~~~~~~~~e~---~q-----------~pn~~~~lKvGq~l~~~V~k~ 210 (1710)
T KOG1070|consen 145 LNTHLSDEMLAAGEVLDTAVVSIEDHGAILDVGLDEITGFIEK---SQ-----------FPNLGAKLKVGQWLRVSVTKS 210 (1710)
T ss_pred cccccCHhHhhhhhhhccccccccccccchhcCCccccchhhh---cc-----------CchhhhhcccCceEEEEEEec
Confidence 457899999999999999999999999887762 123333211 11 236778999999999999987
Q ss_pred ecCc-cccceeEEEEEechhhhccCCCcccccCCcEEEEEEeeeeceeEEEEecCCcceeeccCCCCCCCCCCccCCCcE
Q 000176 201 DDDK-KEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLL 279 (1924)
Q Consensus 201 ~~~~-~~~~~~~i~LSl~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~~~~~~l~~G~~ 279 (1924)
.... .+..+++++++++|...| ++..++|.|||+++|.|+||||||+++|| +.+++|||+++++++.. .+.+||.
T Consensus 211 ~s~~v~ks~~~~~~~t~~~t~~~-~~~~~~LvpGt~vqa~V~sv~~~Gi~~di-l~~ftG~l~~~hl~~~~--~~~~~~~ 286 (1710)
T KOG1070|consen 211 TSERVVKSTKFVEVLTLNPTSCN-GLALNDLVPGTMVQAEVQSVEDHGITLDI-LNGFTGFLDKKHLPPFL--RYFENQE 286 (1710)
T ss_pred cCceEEecccceeeecccchhcc-ccchhhcCCcceEEEEecceecCcEEEEe-cccccceeehhhCCchh--hccccHH
Confidence 6521 111378999999999999 89999999999999999999999999999 79999999999998665 6889999
Q ss_pred EEEEEEEEcCCCcEEEEccCccccccccccCcccccccccCCCceEEEEEEEEecCeEEEEecCceEEEEeccccCCCCC
Q 000176 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359 (1924)
Q Consensus 280 ~~~~v~~~~~~~~~v~ls~~~~~~~~~~~~~~~~~~~~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~g~v~~~hl~~~~~ 359 (1924)
++|.|+.. +.|++.+..-. -++ ++.. -..+++++.||..++..+..+.+.|..+++++.-.+..+..|+....+
T Consensus 287 ~l~~vi~~--s~Rv~~~~f~~--ka~-ki~~-l~~~v~ai~p~~~~~~~~~e~~k~G~~~K~~vi~~~~~~~~~~~tl~~ 360 (1710)
T KOG1070|consen 287 KLGKVIHK--SDRVFVVDFFD--KAS-KILV-LKAGVDAIAPSRIEKVLSFEIFKIGNKVKCRVIDVLQMDSLALFTLKE 360 (1710)
T ss_pred Hhhcccch--hhheeeechhh--ccc-eEEE-ecCccceEccCCcccccchhhcccCceEEEEEEEEeeccceEEeecch
Confidence 99998764 46777665421 111 1111 234789999999999999999999999999998899999999987654
Q ss_pred CCCccccCCCCCEEEEEEEEEeC--C-CceEEEeeCccccccCC--C----CCCCCCCCeEEeeEEEEEeCCceEEEEcC
Q 000176 360 TTNWKNDYNQHKKVNARILFVDP--T-SRAVGLTLNPYLLHNRA--P----PSHVKVGDIYDQSKVVRVDRGLGLLLDIP 430 (1924)
Q Consensus 360 ~~~~~~~~~~G~~v~arVl~~~~--~-~k~v~lSl~p~~~~~~~--~----~~~~~~G~iv~~~~V~~~~~~~G~~v~~~ 430 (1924)
.+++.+|..+.-|++|++..-| . +-.++++-+||+..+.. | .....+|..+-.|.+...+..+++++...
T Consensus 361 -s~ie~k~~~~s~V~~r~l~~~~~svdt~~~~l~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~v~~~sK 439 (1710)
T KOG1070|consen 361 -SAIEGKFSLVSDVSPRGLLKKPVSVDTEEVGLSPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLKVLCVSK 439 (1710)
T ss_pred -hhccCceEEEeccCCceEEEecccCChhhhhccccchhhceeecCCCcccccccceeeEEeeccceeeeeeeeeeEeec
Confidence 4788999999999999999877 3 33799999999997543 2 24577788777788777776667666654
Q ss_pred CCCCccceEEeccchhhHHHHhhh----hcccCCCEEEEEEEEEeecCCeEEEEeecccccccccccccCCCCCeEEEEE
Q 000176 431 STPVSTPAYVTISDVAEEEVRKLE----KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506 (1924)
Q Consensus 431 ~~~~~~~gfv~~s~~~~~~~~~~~----~~~~vG~~~~~rV~~~~~~d~~~~~s~k~~~~~~~~~~~~~l~~G~~v~g~V 506 (1924)
. +.+.+|++...+.++.+.... ..|++|+++.|||.+|.+.+..++|++.++++..++++.+||+.|++|.|+|
T Consensus 440 ~--pvis~y~~~~~~t~~~l~~v~q~~v~~~e~~te~~~rv~~v~~v~~v~~v~~~~svl~lk~~~~nDI~iG~~V~~~I 517 (1710)
T KOG1070|consen 440 L--PVISMYADAVKLTHGMLSKVPQGMVPIYEVGTEVKSRVWQVFYVGKVVIVSVRESVLGLKFLRVNDIEIGQLVPGVI 517 (1710)
T ss_pred C--cceEEEeeccccCcchhhccccCCCCceecCCcccCccceecccCcEEEEEEehHhhcccccccccccccceeeeEE
Confidence 3 345799998877766665542 3599999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceEEEeCCC-eEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEccccccchhhHhhhhccc
Q 000176 507 IAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEA 583 (1924)
Q Consensus 507 ~~v~~~G~~V~l~~~-v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~~~l~lT~K~~Lv~~~~~~~~~~~~~ 583 (1924)
.++++.|+.|.+..+ |.|++|..||+|.+...|+.+|++|..+++|||.+ +++++.||+|++|++...|...+|+++
T Consensus 518 ~~vt~~Gv~v~v~~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~RVl~~~~~~~~v~l~~K~slv~~~~plp~d~~~~ 597 (1710)
T KOG1070|consen 518 RKVTPQGVEVLVTFGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKLRVLSVNRDRNRVALTLKKSLVNTQLPLPSDFEQA 597 (1710)
T ss_pred EEecCCcEEEEEecCceeeecChHhhhhcccccccceeeeccccEEEEEEEEccCCeeEEEechhhhcccCCCccchhhc
Confidence 999999999998765 99999999999999999999999999999999999 589999999999999999999999999
Q ss_pred CCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEeeCCCCc--
Q 000176 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV-- 661 (1924)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~~~~~-- 661 (1924)
++|++++|+|.++.++||||+|+|++.||+|.++|+..++.+++++|.+||+|.+.|+++|++++||.+||+++++..
T Consensus 598 ~pg~~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm~l~~r~s~~~~a~ 677 (1710)
T KOG1070|consen 598 IPGKITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRMPLGLRASSCARAC 677 (1710)
T ss_pred CCCceEEEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhcccccEEEEEEEecCchhceeehhhhhhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred --ccccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCC-ccchhhhccccCCCCeEeeEEEeecCCC--e
Q 000176 662 --SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESS--N 736 (1924)
Q Consensus 662 --~~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~-~~~~~~~~~~~~~G~~i~~vl~id~~~~--~ 736 (1924)
...+.+..|.+..+.+...+.+.+.|++. ..++.|++...||.|. ...+..+.+.++.+...-. |+++...+ -
T Consensus 678 ~~~~~e~~~~g~v~s~~~~~~tkd~viVei~-~~~~~~v~~~~~L~dg~v~~~~~~~~kl~~~t~~~~-lv~gq~~~~~i 755 (1710)
T KOG1070|consen 678 VKRSVENFVKGGVKSLKSIDKTKDSVIVEIV-DQGITGVGVFGELVDGSVVVNKVLENKLRKNTSLLH-LVVGQVTVGVI 755 (1710)
T ss_pred HHHHHHHhhccccccceeehhccccEEEEcc-CcceEEEEEEEEEccCceEEccchhhhhhhcchhhe-eeecceeEEEE
Confidence 23467788988899999999999999994 2479999999999983 3344444444443333332 23332222 2
Q ss_pred EEEEecccccchhc--cCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEE
Q 000176 737 LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814 (1924)
Q Consensus 737 i~ls~K~sl~~~~~--~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~ 814 (1924)
+.+++|.+++..+. .+|....++..|...+++|.+|...|.|+.|.+++.+|++.+++.+....+....++ ||.|.|
T Consensus 756 ~~isl~k~lv~~s~~~~L~~~~~~l~k~~~~~~~v~~is~~~~~~a~~~~~i~~v~~s~~v~s~~~d~~~~~y-~Q~v~~ 834 (1710)
T KOG1070|consen 756 LSISLKKSLVLISLCTDLPNNATKLLKGSYALALVRSISKEGKFVAFVSNLIALVKVSHLVDSELDDLTKAEY-GQSVTV 834 (1710)
T ss_pred EEeehhhhhhhccccccccchHHHHhcCchhHHHHHhhhhheeheeecccccceeeccccccccccccceeee-ecccce
Confidence 56666777765544 366667778889999999999999999999999999999999988776666554444 399999
Q ss_pred EEEEeeCCCCeEEEeecccccCCCchhhHHHHHHHHHHHHHhhcccCCCccccccccccCccEEEEEEEEEecceeEEEe
Q 000176 815 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894 (1924)
Q Consensus 815 ~V~~id~~~~r~~lSlk~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~~~g~~v~l 894 (1924)
+++++++......++++......
T Consensus 835 ~~~st~~~~~~~~~a~e~p~~K~--------------------------------------------------------- 857 (1710)
T KOG1070|consen 835 KLLSTEPKVVKDLKAVEKPKKKK--------------------------------------------------------- 857 (1710)
T ss_pred EEEecChhHHHHHHhhcchhhcc---------------------------------------------------------
Confidence 99999887666665555432200
Q ss_pred ccCCceeEEEeeeecCCcccccCCeEEEEEEEeeccccEEEEeechhhhhhhhhcchhhHHhHhhhhhccccccCCCcEE
Q 000176 895 EEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974 (1924)
Q Consensus 895 ~~~~~v~g~i~~~~l~~~~~~~G~~v~~~Vl~vd~~~~~v~ls~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v 974 (1924)
.+. ....+++.....|+.++ +...++..|+.+
T Consensus 858 -----------------------~~~-~~~~~~~~~d~~Vd~a~------------------------k~~~~~~igsiv 889 (1710)
T KOG1070|consen 858 -----------------------EKK-FIKVSSNDSDNEVDLAI------------------------KSTEDLSIGSIV 889 (1710)
T ss_pred -----------------------cee-EEEeccccCCCcccccc------------------------ccccceeeeeEE
Confidence 000 00000101111121211 123568999999
Q ss_pred EEEEEEEeeeEEEEEecCCcceEEEEeeecCC----CCCCCcccccCCCeEEEEEeccCCCCccchhhhhhhhccc--cc
Q 000176 975 NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN----TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE--TE 1048 (1924)
Q Consensus 975 ~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~----~~~~~~~~f~~Gq~v~~~V~~~~~~~~~~~~~l~~~~~~~--~~ 1048 (1924)
.|+|..|+++.+.|.| +.+..|.++++|.- .-..|..+|++|++|.|+|....+. ..+..+..-... .+
T Consensus 890 ~a~v~svKp~~L~v~l--~~~~~gri~isev~d~~~eitDp~~k~~vG~~I~vrviG~~D~---k~lpith~i~k~~v~E 964 (1710)
T KOG1070|consen 890 RAYVKSVKPDQLNVLL--AANHHGRIHISEVLDNLHEITDPLDKFKVGDGIFVRVIGGHDV---KDLPITHLISKEQVLE 964 (1710)
T ss_pred EEEEeeecccceEEec--cccccCceehHHhhccccccCChhhhcccCCeEEEEEEcCCcc---ccCccccccchhhhhh
Confidence 9999999999999999 68899999998873 2233888999999999999985321 111111110000 11
Q ss_pred ccccc--------ccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEcccccCCccccccccccccCCCCEEEEE
Q 000176 1049 TSSSK--------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120 (1924)
Q Consensus 1049 ~~~~~--------~~~~~~~~~~G~~v~g~V~~v~~~~l~V~l~~~~~G~i~~~e~~d~~~~~~~~p~~~~~~G~~v~~~ 1120 (1924)
.+..+ ..+....++.|+.|.|.|..+.+..+.|.+...+.|||++-.+..+. ...++|-+.|..|+.++++
T Consensus 965 lSvkps~les~~~~t~s~~q~~~gq~vtGfV~nv~ke~~w~~isp~v~~RIplld~s~~~-~~le~~e~~F~~g~al~~~ 1043 (1710)
T KOG1070|consen 965 LSVKPSELESDEFNTTSTKQFKAGQEVTGFVNNVSKEWLWVRISPFVDGRIPLLDTSLDL-HVLELPESLFPLGKALDEY 1043 (1710)
T ss_pred hccChhhhccccccccchhhhhcCCeEEEEEEccccceeEEEccccccceeeeeeccchh-hhhhCchhhcccccceeeE
Confidence 11111 11223578999999999999999999999999999999987765221 1237888999999999999
Q ss_pred EEeeecCCCCccceeEEEeeccccccccccccccccccccCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEcc-ccCCC
Q 000176 1121 IIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL-DSAYE 1199 (1924)
Q Consensus 1121 Vl~~~~~~~~~~~~~~eLS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~-~~s~~ 1199 (1924)
|.+.+.. .++..++ ++. .... ..+|++.-|.|.++..+++.|++....-|+++.. +++++
T Consensus 1044 V~~~~~~-----~tv~~iG--~~~----------~~k~--~s~G~~l~Grv~kv~~~~~~l~~~~~~~G~~~~i~~~~d~ 1104 (1710)
T KOG1070|consen 1044 VVRNDKS-----KTVRAIG--FSK----------SDKN--PSPGDILFGRVSKVLPGYLILQLPFKVFGRVSFIEDMSDS 1104 (1710)
T ss_pred Eecccce-----eEEEecc--ccc----------CCCC--CCcchhhcceeeeeccceeEEecCCccccceEEeeehhcc
Confidence 9887610 0111111 110 0111 2599999999999999999999999999977766 77766
Q ss_pred CchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEecccccc-----cccccccccccccccccCCCCEEEEEEEEEecCc
Q 000176 1200 PSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG-----ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274 (1924)
Q Consensus 1200 ~~~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~~-----~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~ 1274 (1924)
.+ .+|...|..++.+.++++.++..++.+.||++..... ..+....+.++++ .|+++.|.|..+.+.
T Consensus 1105 ~~--~~P~~~f~~~~~v~~~~L~vs~~n~~leLslr~sr~~~t~~~~kd~~iks~eDlk-----~g~iv~G~V~nv~~~- 1176 (1710)
T KOG1070|consen 1105 YS--MTPVEHFTKIQIVYVCVLSVSALNKGLELSLRESRTKITPVDSKDGSIKSIEDLK-----IGDIVRGFVKNVETK- 1176 (1710)
T ss_pred cc--CChHHhcccccEEEEEEEEEecccccceeecccccccCccccccCCcccchhhcc-----cCceeEEEEEEecCC-
Confidence 54 3577789999999999999998888899999954321 1123334455665 999999999999999
Q ss_pred CeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeeccccCCCCCCCCCCCCCCCC
Q 000176 1275 GGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1354 (1924)
Q Consensus 1275 ~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~~~~~~~~~~~~~~~~~~~ 1354 (1924)
|+|+.|+.++.++++++++++.+...+...|++|+.+..+|+.++.. .+++.||++++..+. +
T Consensus 1177 -glfi~ls~~v~a~v~is~~~ds~~k~w~k~~~~gklv~~rv~~ve~~---s~riel~Lk~s~~~d----~--------- 1239 (1710)
T KOG1070|consen 1177 -GLFIALSRKVEAFVPISGLSDSFEKEWEKHLPVGKLVTGRVLSVEED---SKRIELSLKNSDIKD----T--------- 1239 (1710)
T ss_pred -cEEEEEccceEEEEEccccccchhhhhhccCCccceeeeEEEEeecc---CceEEEEEeccccCC----c---------
Confidence 99999999999999999999999999899999999999999999986 689999999986111 0
Q ss_pred CcchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCc--EEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEE
Q 000176 1355 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL--DAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432 (1924)
Q Consensus 1355 ~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v--~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri 1432 (1924)
........+++.|+...|+|.++.++|+|+.+++++ .|++|+++..+.+..+....|..|+.|.+.++.++.+.+||
T Consensus 1240 -~~~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~~~e~~d~~~e~it~~~~~~~~V~a~~lk~~~ek~rI 1318 (1710)
T KOG1070|consen 1240 -VKLLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCHISEEADDRGENITALYYAGDRVKACVLKEDSEKKRI 1318 (1710)
T ss_pred -hhhhhhhhhhhccccccceEEEecCCceEEEecCcceecccccceeecchhhhhcccceeccceeeeEeeeccchhhhh
Confidence 112344567899999999999999999999999887 89999999999999998888999999999999999999999
Q ss_pred EEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEE
Q 000176 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512 (1924)
Q Consensus 1433 ~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~ 1512 (1924)
.+.+|.+-.....+.. ++.-..-|+=-+.+ ...++ +.-+.+-+.
T Consensus 1319 sl~~k~s~~~~~dd~~----------------~~~~~~e~v~~~~~----------------~~~d~----~s~~~~~~~ 1362 (1710)
T KOG1070|consen 1319 SLGLKSSYLSSEDDAR----------------ITSYGEEGVEMEEE----------------SHSDP----KSMEEVAAE 1362 (1710)
T ss_pred hhhhhhhccCChhhhh----------------cccccccCcchhcc----------------cccCc----cchhhhccc
Confidence 9999987653211110 00000000000000 00000 000000000
Q ss_pred EEEEecCCCeeEEeccccccCCCcccccCCcccchhHHHHhhcccCcccccccCccccccccccccCCCccccccccccc
Q 000176 1513 ILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRA 1592 (1924)
Q Consensus 1513 Vl~id~e~~ri~lslK~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1592 (1924)
.-....+-+ .| ..++.. ..++....... +++++.+...++..
T Consensus 1363 -------d~g~q~~~~--g~------------~~e~~~--d~~~~~~p~~l------------e~s~~td~e~d~~~--- 1404 (1710)
T KOG1070|consen 1363 -------DPGFQSSSG--GF------------NLEDAV--DEMSETLPDAL------------EDSCETDSEVDEEV--- 1404 (1710)
T ss_pred -------CCCcccccc--ce------------ehhhhh--hhccccCCchh------------hhcccchhhhhhcc---
Confidence 000000000 00 000000 00000000000 00000000000000
Q ss_pred CCCCccccCCCCCCCcCcCCCCC---CCCccch--hhhhhhhhhhhhhHHHHHHHHH----------H-HHHHHHHhcCC
Q 000176 1593 SVPPLEVNLDDEQPDMDNGISQN---QGHTDEA--KTIDEKNNRHAKKKEKEEREQE----------I-RAAEERLLEKD 1656 (1924)
Q Consensus 1593 ~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~k~~~k~~~e~~----------~-~~~e~~~~~~~ 1656 (1924)
.+.+.++++.+.+- -++.+++ ++......+ .+...++.+.. | +-+.-.+.-.+
T Consensus 1405 ---------~~~e~~qde~dee~e~~kee~e~~~~~~e~~dl~~--~pesaeDferlvrssPNSSi~WI~YMaf~LelsE 1473 (1710)
T KOG1070|consen 1405 ---------EDEELDQDEKDEEKEKDKEEREENRSDEEERDLSR--APESAEDFERLVRSSPNSSILWIRYMAFHLELSE 1473 (1710)
T ss_pred ---------ccccccccccchhhhhhhhhccccccchhhccccc--CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhh
Confidence 00000000000000 0000000 000000000 00000111111 1 11111122345
Q ss_pred CCchHHHHHHHHH-hCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000176 1657 APRTPDEFERLVR-SSP----NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731 (1924)
Q Consensus 1657 ~p~a~~~ferll~-~~P----~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~ 1731 (1924)
.+.|++.+||+|. .|+ .--.+|++|..++..-|.-+...++|+||-+.++. +.++.+++.++...+.+
T Consensus 1474 iekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~------~~V~~~L~~iy~k~ek~- 1546 (1710)
T KOG1070|consen 1474 IEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA------YTVHLKLLGIYEKSEKN- 1546 (1710)
T ss_pred hHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHhhcc-
Confidence 7889999999995 555 35779999999999999999999999999987663 56888899998888855
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~--~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
+.|.++|++.++.... ..+|..|+.++.+..+-++|++++++|++-.|. ...+....|++.++. +.+++|.+|+-
T Consensus 1547 -~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEg 1625 (1710)
T KOG1070|consen 1547 -DEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEG 1625 (1710)
T ss_pred -hhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHH
Confidence 8999999999998774 599999999999999999999999999987765 788888999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~--~Pk~~d-lw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.|..+|++. ++|+-|+.++.++|+.+.+|.+|||++.. .|++.. ++..|+++|-..||-..+..+=.||+.
T Consensus 1626 ll~ayPKRt--DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1626 LLSAYPKRT--DLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHhhCccch--hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 999999995 89999999999999999999999999875 466554 678899999999998887777777665
No 3
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.9e-60 Score=573.18 Aligned_cols=492 Identities=23% Similarity=0.278 Sum_probs=434.8
Q ss_pred ccccccCCCceEEEEEEEEecCeEEEEecCceEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeCc
Q 000176 314 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393 (1924)
Q Consensus 314 ~~~~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~g~v~~~hl~~~~~~~~~~~~~~~G~~v~arVl~~~~~~k~v~lSl~p 393 (1924)
.+...+.||+.|.|+|.+|.++++.|.+++...|+|+...++..... ..|++|+.+.+.|+.+.+....+.||.+.
T Consensus 14 ~~~~~~~~G~vV~G~Vv~i~~~~v~Vdig~Kseg~ip~~E~~~~~~~----~~~~~gd~v~v~v~~~e~~~g~~~lS~~k 89 (541)
T COG0539 14 KSDEEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPVE----DVVQVGDEVEVLVLRVEDGEGELVLSRRK 89 (541)
T ss_pred cchhccCCCCEEEEEEEEEeCCeEEEEecCccccEeEHHHhcccccc----ceecCCCEEEEEEEEEecCCceEEeeHHH
Confidence 46788999999999999999999999999999999999998865432 27999999999999998887788888765
Q ss_pred cccc--cCCCCCCCCCCCeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEe
Q 000176 394 YLLH--NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 471 (1924)
Q Consensus 394 ~~~~--~~~~~~~~~~G~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~ 471 (1924)
.-.. |..-...+..|.+|+ ++|.....+ |+.|++. +++||+|.|+++..++.+.. -.+|.++.+.|+.++
T Consensus 90 ~~~~~~w~~l~~~~e~~~~V~-~~v~~~vKG-G~~Vdi~----gvr~FlP~S~v~~r~v~d~~--~~~Gk~~~~kiie~d 161 (541)
T COG0539 90 AERERAWEKLEEAFENGEIVE-GKITGKVKG-GLTVDIE----GVRAFLPGSLVDVRPVRDLD--PLIGKELEFKILELD 161 (541)
T ss_pred HHHHHhHHHHHHHHhcCCeEE-EEEEEEecC-cEEEEEC----CEEEeccHHHhccccccccc--ccCCceEEEEEEEEc
Confidence 4332 333345788899998 778877788 9999996 25999999999877665543 578999999999999
Q ss_pred ecCCeEEEEeecc----cccccccccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCC
Q 000176 472 HLEGLATGILKAS----AFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547 (1924)
Q Consensus 472 ~~d~~~~~s~k~~----~~~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~ 547 (1924)
..++.+++|.+.. ..+++...++.+++|++|+|+|++++++|+||+|+ |++|+||.+||||.++.+|++.|++||
T Consensus 162 ~~~n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdig-GvdGLlHiseiS~~rv~~P~~vvkvGd 240 (541)
T COG0539 162 KKRNNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEVVKVGD 240 (541)
T ss_pred cccCcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEec-CeeeEEehhhccccccCCHHHhcccCC
Confidence 9999999987643 33556788999999999999999999999999999 599999999999999999999999999
Q ss_pred EEEEEEEEE--eCCeEEEEEccccccchhhHhhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCC
Q 000176 548 ELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 625 (1924)
Q Consensus 548 ~vk~rVl~v--~~~~l~lT~K~~Lv~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~ 625 (1924)
+|+|+||++ +++|+.||+|+++.+++..+- ....+|+.+.|+|+++.+|||||++++|+.||+|.|||+|.....
T Consensus 241 ~VkvkVi~~D~e~~RVsLSlK~l~~dPw~~i~---~~~~~g~~v~G~Vt~i~~~GafVei~~GvEGlvhvSEisw~~~~~ 317 (541)
T COG0539 241 EVKVKVISLDEERGRVSLSLKQLEEDPWEGIE---KKYPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKNV 317 (541)
T ss_pred EEEEEEEEEccCCCeEEEEehhcccCcHHHHh---hhcCCCCEEEEEEEEeecCcEEEEecCCccceeechhhcccccCC
Confidence 999999999 589999999999887554332 345789999999999999999999999999999999999998888
Q ss_pred CCCCCCCCCEEEEEEEEEcCCCCEEEEEEeeCCC-Ccc-cccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCc
Q 000176 626 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT-RVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703 (1924)
Q Consensus 626 ~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~~~-~~~-~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~ 703 (1924)
|++++++||+|.|+||+||++++||+||||+... ||. ..+.+++|+.++|.|.+++++|+||.+ .++++|+++.++
T Consensus 318 P~evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~~~~g~~v~g~v~~~t~~g~fv~l--e~gidG~vh~~d 395 (541)
T COG0539 318 PSEVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADKHPVGDVVEGKVKSITDFGAFVEL--EGGIDGLVHLSD 395 (541)
T ss_pred HHHhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhhhcCCCCeEEEEEeeecccceEEcc--CCCccceEEHHh
Confidence 9999999999999999999999999999998744 554 345589999999999999999999999 788999999999
Q ss_pred CCCCccchhhhccccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEEC
Q 000176 704 LADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782 (1924)
Q Consensus 704 Lsd~~~~~~~~~~~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~ 782 (1924)
|+|.....+.. .|+.|++++ .+|.+|++++++.|+.|+...++|.... ..++.|++++|+|+++.++|+||+|.
T Consensus 396 ~sw~~~~~~~~--~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~~p~~~~~---~~~~~~~~v~~~v~~i~~~G~~v~l~ 470 (541)
T COG0539 396 LSWDRPGEEAE--KYKKGDEVEAKVLAVDKEKERISLGIKQLEESPWEEFS---EKYKKGSVVKGKVKSVKDKGAFVELG 470 (541)
T ss_pred cCccccCcHHH--hhccCcEEEEEEEEEecccceeeeehhhhccCchhhhH---hhccCCCeEEEEEEEEccCceEEEec
Confidence 99866554433 899999999 8999999999999999999988877643 34889999999999999999999999
Q ss_pred CCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 783 ~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
+++.||++.+++++. .|++||+|+|+|+++|+.++++.||+|....
T Consensus 471 ~~v~G~i~~~~~~~~-------~~~~gd~v~a~v~~id~k~~ki~lSik~~~~ 516 (541)
T COG0539 471 GGVEGLIRLSELSRD-------VLKVGDEVEAVVVSIDKKNRKILLSIKALER 516 (541)
T ss_pred Cceeeeeecchhhhh-------hccCCCEEEEEEEEEcCCCCEEEEEechhhh
Confidence 999999999999876 7999999999999999999999999997753
No 4
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-58 Score=557.96 Aligned_cols=496 Identities=23% Similarity=0.321 Sum_probs=440.6
Q ss_pred CCCCCCCCeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEeecCCeEEEEe
Q 000176 402 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 481 (1924)
Q Consensus 402 ~~~~~~G~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~ 481 (1924)
...+.+|+++. ++|+.++.+ +++|+++.+. .|++|+++++..+... .|++|+.+.+.|+.....++.+++|.
T Consensus 16 ~~~~~~G~vV~-G~Vv~i~~~-~v~Vdig~Ks---eg~ip~~E~~~~~~~~---~~~~gd~v~v~v~~~e~~~g~~~lS~ 87 (541)
T COG0539 16 DEEFEPGDVVK-GTVVSIEKD-GVLVDIGGKS---EGVIPISEFSNEPVED---VVQVGDEVEVLVLRVEDGEGELVLSR 87 (541)
T ss_pred hhccCCCCEEE-EEEEEEeCC-eEEEEecCcc---ccEeEHHHhccccccc---eecCCCEEEEEEEEEecCCceEEeeH
Confidence 46789999997 799999998 8999998653 8999999998665333 59999999999999998889999998
Q ss_pred ecccccccc-cccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eC
Q 000176 482 KASAFEGLV-FTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 558 (1924)
Q Consensus 482 k~~~~~~~~-~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~ 558 (1924)
++....+.+ -....+..|.+|+|+|+...+.|++|++. |+.||+|.+|++..++.++ .-.+|.+++++|+.+ .+
T Consensus 88 ~k~~~~~~w~~l~~~~e~~~~V~~~v~~~vKGG~~Vdi~-gvr~FlP~S~v~~r~v~d~--~~~~Gk~~~~kiie~d~~~ 164 (541)
T COG0539 88 RKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDIE-GVRAFLPGSLVDVRPVRDL--DPLIGKELEFKILELDKKR 164 (541)
T ss_pred HHHHHHHhHHHHHHHHhcCCeEEEEEEEEecCcEEEEEC-CEEEeccHHHhcccccccc--cccCCceEEEEEEEEcccc
Confidence 766555443 33556788999999999999999999998 5999999999986444332 245999999999999 57
Q ss_pred CeEEEEEccccccchhhHhh-hhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEE
Q 000176 559 KRITVTHKKTLVKSKLAILS-SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637 (1924)
Q Consensus 559 ~~l~lT~K~~Lv~~~~~~~~-~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~ 637 (1924)
+++.+|+|..+..+....-. -++++++|+++.|+|+++++|||||+++ |++||||+++|+|.++.+|++.|++||+|+
T Consensus 165 n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdig-GvdGLlHiseiS~~rv~~P~~vvkvGd~Vk 243 (541)
T COG0539 165 NNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEVVKVGDEVK 243 (541)
T ss_pred CcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEec-CeeeEEehhhccccccCCHHHhcccCCEEE
Confidence 89999999988865553322 3678899999999999999999999995 599999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEEeeC-CCCccc-ccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhc
Q 000176 638 CRIMSSIPASRRINLSFMMK-PTRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715 (1924)
Q Consensus 638 ~rVl~vd~~~~ri~lS~k~~-~~~~~~-~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~ 715 (1924)
|+|+++|++++|+.||+|+. ..||.. ...+++|+.+.|+|++++++|+||++ .++++|++|.+++|+..... ..
T Consensus 244 vkVi~~D~e~~RVsLSlK~l~~dPw~~i~~~~~~g~~v~G~Vt~i~~~GafVei--~~GvEGlvhvSEisw~~~~~--P~ 319 (541)
T COG0539 244 VKVISLDEERGRVSLSLKQLEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEI--EEGVEGLVHVSEISWTKKNV--PS 319 (541)
T ss_pred EEEEEEccCCCeEEEEehhcccCcHHHHhhhcCCCCEEEEEEEEeecCcEEEEe--cCCccceeechhhcccccCC--HH
Confidence 99999999999999999986 446653 47799999999999999999999999 88999999999999844332 46
Q ss_pred cccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCcc
Q 000176 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794 (1924)
Q Consensus 716 ~~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~ 794 (1924)
+.+++||+++ .+|.+|+++++|+||+|+..-+||+..... +++|+++.|.|.++|++|+||.+.+|+.||+|.+++
T Consensus 320 evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~---~~~g~~v~g~v~~~t~~g~fv~le~gidG~vh~~d~ 396 (541)
T COG0539 320 EVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADK---HPVGDVVEGKVKSITDFGAFVELEGGIDGLVHLSDL 396 (541)
T ss_pred HhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhhh---cCCCCeEEEEEeeecccceEEccCCCccceEEHHhc
Confidence 7899999999 899999999999999999999999876533 889999999999999999999999999999999999
Q ss_pred CcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccccCCCchhhHHHHHHHHHHHHHhhcccCCCccccccccccC
Q 000176 795 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874 (1924)
Q Consensus 795 s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 874 (1924)
+|.....+...|+.|+.|.|.|+.+|++++|++|++|+... +||..+...++.
T Consensus 397 sw~~~~~~~~~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~---------------------------~p~~~~~~~~~~ 449 (541)
T COG0539 397 SWDRPGEEAEKYKKGDEVEAKVLAVDKEKERISLGIKQLEE---------------------------SPWEEFSEKYKK 449 (541)
T ss_pred CccccCcHHHhhccCcEEEEEEEEEecccceeeeehhhhcc---------------------------CchhhhHhhccC
Confidence 99887777779999999999999999999999999998754 357777888999
Q ss_pred ccEEEEEEEEEecceeEEEeccCCceeEEEeeeecCCcccccCCeEEEEEEEeeccccEEEEeechhhhhh
Q 000176 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945 (1924)
Q Consensus 875 G~~v~g~V~~i~~~g~~v~l~~~~~v~g~i~~~~l~~~~~~~G~~v~~~Vl~vd~~~~~v~ls~k~~l~~~ 945 (1924)
|+.|+|+|++++++|+++.+.+ ++.|+++.++++...+++||+++|+|+.+|+.++.+.||+|+...+.
T Consensus 450 ~~~v~~~v~~i~~~G~~v~l~~--~v~G~i~~~~~~~~~~~~gd~v~a~v~~id~k~~ki~lSik~~~~~e 518 (541)
T COG0539 450 GSVVKGKVKSVKDKGAFVELGG--GVEGLIRLSELSRDVLKVGDEVEAVVVSIDKKNRKILLSIKALERKE 518 (541)
T ss_pred CCeEEEEEEEEccCceEEEecC--ceeeeeecchhhhhhccCCCEEEEEEEEEcCCCCEEEEEechhhhhh
Confidence 9999999999999999999986 57999999999999999999999999999999999999999987764
No 5
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=100.00 E-value=4e-56 Score=581.09 Aligned_cols=506 Identities=19% Similarity=0.257 Sum_probs=418.2
Q ss_pred cccccCCCcEEEEEEEEEeeeEEEEEecCCcceEEEEeeecCCCCCCCcccccCCCeEEEEEeccCCCCccchhhhhhhh
Q 000176 964 ASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 1043 (1924)
Q Consensus 964 ~~~~l~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~~~V~~~~~~~~~~~~~l~~~~ 1043 (1924)
.+..++.|+.|+|+|..++++|+||++ |++..|++|..+|. ..+++|++|.|.|..++ + .+ ..|....
T Consensus 315 ~~~~~~~G~iV~G~Vv~i~~~~v~Vdi--G~K~eGiI~~~E~~------~~~kvGd~i~~~V~~~~--~-~~-~~LS~~~ 382 (863)
T PRK12269 315 SFEAPEPGSVRMGTVVQVNAGTVFVDI--GGKSEGRVPVEEFE------APPKAGDGVRVYVERVT--P-YG-PELSKTK 382 (863)
T ss_pred ccccCCCCCEEEEEEEEEECCEEEEEe--CCCceEEeEHHHhc------cCCCCCCEEEEEEEEEc--C-Cc-eEEEehH
Confidence 356799999999999999999999999 89999999999984 23689999999999875 2 23 3332221
Q ss_pred ccccccccccccccCCCCCCCCeEEEEEEEEe--CCeEEEEeCCCeeEEEEcccccCCccccccccccccCCCCEEEEEE
Q 000176 1044 ISETETSSSKRAKKKSSYDVGSLVQAEITEIK--PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121 (1924)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~--~~~l~V~l~~~~~G~i~~~e~~d~~~~~~~~p~~~~~~G~~v~~~V 1121 (1924)
... ...+.+....++.|++|+|+|.++. +.|+.|+++.+.+|++|.+|+..... ..+ ...+|++++++|
T Consensus 383 ~~~----~~~~~~l~~a~~~g~~V~G~Vv~v~~~kgG~~Vdig~~~~gfiP~se~~~~~~----~~~-~~~vG~~ie~~V 453 (863)
T PRK12269 383 ADR----LGLKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDLGAGMMAFLPISQSDCQKV----DAP-ESLIGLTSKFYI 453 (863)
T ss_pred hhh----hHHHHHHHHHHhCCCeEEEEEEEEEeecCEEEEEECCCcEEEEEHHHhccccc----cch-HHhCCCeEEEEE
Confidence 100 0112223357789999999999984 47999999989999999999854321 112 225899999999
Q ss_pred EeeecCCCCccceeEEEeeccccccccccccccccccccCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEccccCCCCc
Q 000176 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201 (1924)
Q Consensus 1122 l~~~~~~~~~~~~~~eLS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~ 1201 (1924)
+.++....+...+.+.||+|...-..........+++ +++|+.|+|+|.++.++|++|+++ +++|++|.++++|..
T Consensus 454 ~~~~~~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~--l~~G~~V~G~Vk~i~~~G~fVdl~-Gv~Gfvp~SeiS~~~- 529 (863)
T PRK12269 454 ERISQSKQHRGNDNIVINRRRYLEERARQAREEFFNS--VHIEDSVSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGH- 529 (863)
T ss_pred EEEecccccCCCCeEEEEHHHHHHHHHHHHHHHHHhc--CCCCCEEEEEEEEEeCCcEEEEEC-CEEEEEEchhccccc-
Confidence 9986321111234699999875432221000112444 589999999999999999999996 899999999999874
Q ss_pred hhhhhccccCCCCEEEEEEEEEeCCCcEEEEEecccccccccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEe
Q 000176 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281 (1924)
Q Consensus 1202 ~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~~~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l 1281 (1924)
+.++.+.|++||.++|+|+++|.+++++.||++... .++|....+.++ +|+++.|+|+++.++ |+||+|
T Consensus 530 -v~~~~~~~kvGq~v~vkVi~iD~e~~rI~LSlK~l~---~~p~~~~~~~~~-----vG~iV~G~V~~I~~f--G~fVeL 598 (863)
T PRK12269 530 -VARPREFVKKGQTIELKVIRLDQAEKRINLSLKHFQ---PDPWLEFENKFG-----VNDVVKGRVTKIADF--GAFIEL 598 (863)
T ss_pred -cCCHHHhccCCCEEEEEEEEEecCCCeEEEEEeccc---cchhhhhhccCC-----CCCEEEEEEEEEeCC--eEEEEe
Confidence 456777899999999999999999999999999864 577876666666 999999999999999 999999
Q ss_pred CCceEEEEecccccc-cccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeeccccCCCCCCCCCCCCCCCCCcchhh
Q 000176 1282 GPHLYGRVHFTELKN-ICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLE 1360 (1924)
Q Consensus 1282 ~~~~~G~v~~selsd-~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1924)
++++.|++|++|++| ....+|.+.|++|+.|+|+|+++|.+ ++++.||+|... .+|| ..
T Consensus 599 ~~gveGLvhiSEls~~~~~~~p~~~~kvGd~V~vkVl~iD~e---~~rIsLS~K~l~-----~~Pw------------~~ 658 (863)
T PRK12269 599 AEGIEGLAHISEFSWVKKTSKPSDMVKIGDEVECMILGYDIQ---AGRVSLGLKQVT-----ANPW------------EE 658 (863)
T ss_pred cCCceeeeEHHHhcCccccCCHHHcCCCCCEEEEEEEEEecc---cCceEEEehhcc-----cCch------------HH
Confidence 999999999999987 45678889999999999999999986 689999999886 4554 23
Q ss_pred hhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-CCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1361 KIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-SPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1361 ~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~-~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
..+++++|+++.|+|++++++|+||+|+++++|+||+++++|.+.. .+...|++||.|+|+|+++|++++||.||+|+.
T Consensus 659 ~~~~~~vG~~v~G~V~~i~~~G~fV~l~~gV~GlIh~sels~~~~~~~~~~~~kvGq~VkvkVl~ID~e~rrI~LS~K~l 738 (863)
T PRK12269 659 IEARYPVGARFTRRIVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQL 738 (863)
T ss_pred HHHhCCCCCEEEEEEEEEecceEEEEeCCCcEEEEEhHHhhccccccchhhccCCCCEEEEEEEEEeccCCEEEEEeccc
Confidence 3457999999999999999999999999999999999999997654 445689999999999999999999999999998
Q ss_pred cccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCc---ccccCCCcEEEEEEEEE
Q 000176 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI---ETIYRAGEKVKVKILKV 1516 (1924)
Q Consensus 1440 ~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~---~~~~~~Gd~Vk~~Vl~i 1516 (1924)
..+||.. ...++++|+++.|+|+++.+||+||+|.+ +++||+|+++++|++..+. .+.|++||.|+++|+++
T Consensus 739 ~~dpw~~----~~~~~~vG~iV~GkV~~v~~~GvFVeL~~-gVeGlI~~s~lsdd~~~~~~~~~~~f~vGD~V~v~Vl~i 813 (863)
T PRK12269 739 SDNPWQV----FANAYGVGSTVEGEVSSVTDFGIFVRVPG-GVEGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDM 813 (863)
T ss_pred ccChHHH----HHhhCCCCCEEEEEEEEEecCeEEEEcCC-CeEEEEEHHHcCCcccccchhhccccCCCCEEEEEEEEE
Confidence 8877654 24568999999999999999999999987 8999999999999875443 35699999999999999
Q ss_pred ecCCCeeEEecccc
Q 000176 1517 DKEKRRISLGMKSS 1530 (1924)
Q Consensus 1517 d~e~~ri~lslK~s 1530 (1924)
|+++++|.||+|++
T Consensus 814 D~~~rkI~LSlk~~ 827 (863)
T PRK12269 814 NVKDRKVAFSVRDY 827 (863)
T ss_pred EcCCCEEEEEEech
Confidence 99999999999985
No 6
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=4e-55 Score=571.18 Aligned_cols=507 Identities=22% Similarity=0.306 Sum_probs=428.3
Q ss_pred cccCCCcEEEEEEEEEeeeEEEEEecCCcceEEEEeeecCCCCCCCcccccCCCeEEEEEeccCCCCccchhhhhhhhcc
Q 000176 966 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045 (1924)
Q Consensus 966 ~~l~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~~~V~~~~~~~~~~~~~l~~~~~~ 1045 (1924)
.+++.|+.++|+|..+++++++|++ +++..|++|.+++.. ..+...|.+|+.+.+.|..++ +..++++|+.+...
T Consensus 26 ~~~~~G~~v~G~V~~v~~~~~~Vdi--g~k~~g~lp~~e~~~-~~~~~~~~vG~~i~~~V~~~~--~~~~~i~lS~k~~~ 100 (565)
T PRK06299 26 SETREGSIVKGTVVAIDKDYVLVDV--GLKSEGRIPLEEFKN-EQGELEVKVGDEVEVYVERIE--DGFGETVLSREKAK 100 (565)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEe--CCCeEEEEEHHHhcC-ccccccCCCCCEEEEEEEEEE--CCCCcEEEechHHH
Confidence 4578999999999999999999999 788999999999962 223457999999999999986 44566655443211
Q ss_pred ccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEcccccCCccccccccccccCCCCEEEEEEEeee
Q 000176 1046 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125 (1924)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~V~l~~~~~G~i~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~ 1125 (1924)
. ...+......++.|++|+|+|+++.+.|+.|+++ +++|++|.+++.+... .++ .+.+|++++|+|+.++
T Consensus 101 ~----~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~~~-g~~gfip~s~~~~~~~---~~~--~~~vG~~i~~~V~~~d 170 (565)
T PRK06299 101 R----LEAWDKLEKAFENGEIVEGVINGKVKGGFTVDLN-GVEAFLPGSQVDVRPV---RDT--DPLEGKELEFKVIKLD 170 (565)
T ss_pred H----HHHHHHHHHHhhCCCEEEEEEEEEECCEEEEEEC-CEEEEEEHHHccCcCC---CCh--HHhCCCEEEEEEEEEE
Confidence 0 0111222346778999999999999999999998 8999999999965431 222 2569999999999998
Q ss_pred cCCCCccceeEEEeeccccccccccccccccccccCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEccccCCCCchhhh
Q 000176 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205 (1924)
Q Consensus 1126 ~~~~~~~~~~~eLS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~~~~~ 1205 (1924)
.. ...+.||+|+..-..........+.+ +++|+.+.|+|.++.++|++|+++ ++.|++|.++++|+. +.+
T Consensus 171 ~~-----~~~i~lS~k~~~~~~~~~~~~~~~~~--l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~--~~~ 240 (565)
T PRK06299 171 KK-----RNNIVVSRRAVLEEERAEEREELLEN--LEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKR--VNH 240 (565)
T ss_pred CC-----CCEEEEEhHHhhhhhhhhHHHHHHhc--CCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccc--cCC
Confidence 32 23588999986532111000112333 699999999999999999999998 999999999999863 457
Q ss_pred hccccCCCCEEEEEEEEEeCCCcEEEEEecccccccccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEeCCce
Q 000176 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285 (1924)
Q Consensus 1206 ~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~~~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~ 1285 (1924)
+.+.|++||.|.|+|+.+|.+++++.||++... .++|......++ +|+++.|+|+++.++ |+||+|++++
T Consensus 241 ~~~~~kvG~~v~v~V~~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~~v~g~V~~i~~~--G~fV~l~~~v 310 (565)
T PRK06299 241 PSEVVNVGDEVKVKVLKFDKEKKRVSLGLKQLG---EDPWEAIEKKYP-----VGSKVKGKVTNITDY--GAFVELEEGI 310 (565)
T ss_pred HhhcCCCCCEEEEEEEEEeCCCCeEEEEEEecc---cChhHHHHhhCC-----CCCEEEEEEEEEeCC--eEEEEeCCCC
Confidence 778899999999999999999999999999864 467876555666 999999999999999 9999999999
Q ss_pred EEEEecccccccc-cCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhcc
Q 000176 1286 YGRVHFTELKNIC-VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364 (1924)
Q Consensus 1286 ~G~v~~selsd~~-~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1364 (1924)
.|++|++|++|+. ..+|...|++|+.|.|+|+++|.+ ++++.||+|++. .+|| .....+
T Consensus 311 ~Glv~~sel~~~~~~~~~~~~~~~G~~v~v~V~~id~~---~~~i~ls~k~~~-----~~p~------------~~~~~~ 370 (565)
T PRK06299 311 EGLVHVSEMSWTKKNKHPSKVVSVGQEVEVMVLEIDEE---KRRISLGLKQCK-----ENPW------------EEFAEK 370 (565)
T ss_pred EEEEEHHHcCccccccCHHHhcCCCCEEEEEEEEEcCC---CCEEEEehHHhc-----cchh------------hhHHHh
Confidence 9999999998753 456777899999999999999986 689999999886 3333 344567
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-CCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1443 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~-~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~ 1443 (1924)
+++|++|.|+|++++++|+||+|+.+++|++|+++++|.+. .+|.+.|++||.|+|+|+++|+++++|.||+|+...+|
T Consensus 371 ~~~G~~v~g~V~~v~~~G~fV~l~~~v~g~i~~s~l~~~~~~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ls~k~~~~~p 450 (565)
T PRK06299 371 YPVGDVVEGKVKNITDFGAFVGLEGGIDGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERISLGIKQLEEDP 450 (565)
T ss_pred CCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHcCccccccChHhhCCCCCEEEEEEEEEeCCCCEEEEEEehhhcCc
Confidence 89999999999999999999999999999999999999887 88999999999999999999999999999999998877
Q ss_pred cchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCee
Q 000176 1444 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523 (1924)
Q Consensus 1444 ~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri 1523 (1924)
|.. ...++++|++|.|+|+++.++|+||.+.+ ++.||||.|++++.++.++.+.|++||.|+|+|+++|++++||
T Consensus 451 ~~~----~~~~~~~G~vV~G~V~~v~~~G~fV~l~~-gi~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V~~vd~~~~~i 525 (565)
T PRK06299 451 FEE----FAKKHKKGSIVTGTVTEVKDKGAFVELED-GVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRI 525 (565)
T ss_pred hhH----HHhhcCCCCEEEEEEEEEecCceEEecCC-CcEEEEEHHHhcchhccCccccCCCCCEEEEEEEEEccccCEE
Confidence 643 35679999999999999999999999986 8999999999999999999999999999999999999999999
Q ss_pred EEecccccc
Q 000176 1524 SLGMKSSYF 1532 (1924)
Q Consensus 1524 ~lslK~s~~ 1532 (1924)
+||+|++..
T Consensus 526 ~LS~k~~~~ 534 (565)
T PRK06299 526 SLSIKALDE 534 (565)
T ss_pred EEEeeehhh
Confidence 999999754
No 7
>TIGR00717 rpsA ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned.
Probab=100.00 E-value=3.1e-54 Score=558.76 Aligned_cols=501 Identities=21% Similarity=0.303 Sum_probs=420.4
Q ss_pred cccCCCcEEEEEEEEEeeeEEEEEecCCcceEEEEeeecCCCCCCCcccccCCCeEEEEEeccCCCCccchhhhhhhhcc
Q 000176 966 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045 (1924)
Q Consensus 966 ~~l~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~~~V~~~~~~~~~~~~~l~~~~~~ 1045 (1924)
..+++|+.+.|+|..+++++++|++ +++..|++|.+++.. +...|++||.+.+.|..++ +..+++.|......
T Consensus 14 ~~~~~G~~v~g~V~~i~~~~~~v~~--g~k~~g~i~~~E~~~---~~~~~~vGd~i~~~V~~~~--~~~g~i~lS~~~~~ 86 (516)
T TIGR00717 14 EETRPGSIVKGTVVAINKDTVFVDV--GLKSEGRIPKEEFLD---APLEIQVGDEVEVYLDRVE--DRFGETVLSREKAQ 86 (516)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEc--CCCcEEEEEHHHhcC---CccCCCCCCEEEEEEEEEe--CCCCcEEEEHHHhh
Confidence 3588999999999999999999999 899999999999852 2257999999999999875 45667666444221
Q ss_pred ccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEcccccCCccccccccccccCCCCEEEEEEEeee
Q 000176 1046 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125 (1924)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~V~l~~~~~G~i~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~ 1125 (1924)
. ...+......+..|++++|+|.++.+.|+.|+++ +++|++|.+++.+... .+ ....+|++++|+|+.++
T Consensus 87 ~----~~~~~~l~~a~~~g~~v~g~V~~~~~~g~~V~i~-g~~~flP~s~~~~~~~---~~--~~~~vG~~i~~~v~~~~ 156 (516)
T TIGR00717 87 R----HELWIKLEKAYEEGSIVEGKIVGKVKGGFIVDLN-GVEAFLPGSQVDVKPI---KD--LDSLIGKTLKFKIIKLD 156 (516)
T ss_pred h----hHHHHHHHHHhhCCCeEEEEEEEEECCEEEEEEC-CEEEEEeHHHhcCccc---Cc--hhhhCCCEEEEEEEEEE
Confidence 1 0112222356789999999999999999999998 8999999999854321 11 24579999999999998
Q ss_pred cCCCCccceeEEEeeccccccccccccccccccccCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEccccCCCCchhhh
Q 000176 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205 (1924)
Q Consensus 1126 ~~~~~~~~~~~eLS~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~~~~~ 1205 (1924)
.+ ...+.||+|+.+...........++. +++|+.++|+|.++.++|+||+++ +++|++|.+++++.. ..+
T Consensus 157 ~~-----~~~iv~Srk~~l~~~~~~~~~~~~~~--l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~--~~~ 226 (516)
T TIGR00717 157 QK-----RNNIVVSRRAYLEEERSQAREELLEN--LKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKR--VKH 226 (516)
T ss_pred CC-----CCcEEEEHHHHHHHHHHHHHHHHHHh--ccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCC--CCC
Confidence 43 23588999986433211000112333 699999999999999999999996 799999999999864 356
Q ss_pred hccccCCCCEEEEEEEEEeCCCcEEEEEecccccccccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEeCCce
Q 000176 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285 (1924)
Q Consensus 1206 ~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~~~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~ 1285 (1924)
+...|++|+.+.|+|+.+|.+++++.||++... .++|......++ +|+++.|+|+++.++ |+||++++++
T Consensus 227 ~~~~~~vG~~v~v~Vl~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~i~~g~V~~v~~~--G~fV~l~~~v 296 (516)
T TIGR00717 227 PSEYVKVGQEVKVKVIKFDKEKGRISLSLKQLG---EDPWEAIEKKFP-----VGDKITGRVTNLTDY--GVFVEIEEGI 296 (516)
T ss_pred HHHhccCCCEEEEEEEEEECCCCcEEEEEEecc---hhHHHHHHhhcc-----CCCEEEEEEEEeeCC--cEEEEeCCCC
Confidence 777899999999999999999999999999763 356765555565 999999999999999 9999999999
Q ss_pred EEEEecccccccc-cCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhcc
Q 000176 1286 YGRVHFTELKNIC-VSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIED 1364 (1924)
Q Consensus 1286 ~G~v~~selsd~~-~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1364 (1924)
.|++|++|+++++ ..+|...|++|+.++|+|+++|.+ ++++.||+|++. .+| +....++
T Consensus 297 ~g~v~~sels~~~~~~~~~~~~~vG~~v~v~V~~id~~---~~~i~lS~k~~~-----~~p------------~~~~~~~ 356 (516)
T TIGR00717 297 EGLVHVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPE---RRRLSLGLKQCK-----ANP------------WEQFEEK 356 (516)
T ss_pred EEEEEHHHcCCccccCCHHHhccCCCEEEEEEEEEcCC---CCEEEEEehhcc-----cCc------------HHHHHHh
Confidence 9999999998753 455667799999999999999986 679999999876 333 3444567
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-CCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1443 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~-~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~ 1443 (1924)
+++|++++|+|++++++|+||+|+++++|+||+++++|.+. .++...|++||.|.|+|+++|+++++|.||+|++..+|
T Consensus 357 ~~~G~~v~g~V~~v~~~G~fV~l~~~v~glv~~s~ls~~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~i~ls~K~~~~~p 436 (516)
T TIGR00717 357 HPVGDRVTGKIKKITDFGAFVELEGGIDGLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTENP 436 (516)
T ss_pred CCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHCcCcccCCCHhHccCCCCEEEEEEEEEeCcCCEEEEeeccccCCc
Confidence 89999999999999999999999999999999999999865 46778899999999999999999999999999988877
Q ss_pred cchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCee
Q 000176 1444 ASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRI 1523 (1924)
Q Consensus 1444 ~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri 1523 (1924)
|.. ...++++|+++.|+|+++++||+||+|++ ++.||||+|+++++++.++.+.|++||.|+++|+++|++++||
T Consensus 437 ~~~----~~~~~~~G~~v~g~V~~v~~~G~fV~l~~-~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~id~~~~~i 511 (516)
T TIGR00717 437 WEK----FAAKYKVGSVVKGKVTEIKDFGAFVELPG-GVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKV 511 (516)
T ss_pred hhh----hhhccCcceEEEEEEEEEecceEEEEcCC-CeEEEEEHHHcCccccccccccCCCCCEEEEEEEEEeCCCCEE
Confidence 643 25679999999999999999999999986 7999999999999999999999999999999999999999999
Q ss_pred EEecc
Q 000176 1524 SLGMK 1528 (1924)
Q Consensus 1524 ~lslK 1528 (1924)
+||+|
T Consensus 512 ~ls~k 516 (516)
T TIGR00717 512 SLSVK 516 (516)
T ss_pred EEEEC
Confidence 99987
No 8
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=100.00 E-value=9.8e-54 Score=558.73 Aligned_cols=489 Identities=18% Similarity=0.270 Sum_probs=414.0
Q ss_pred CCCCCCCCeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEeecCCeEEEEe
Q 000176 402 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 481 (1924)
Q Consensus 402 ~~~~~~G~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~ 481 (1924)
...+..|++++ ++|.+++.+ ++||+++.+. .|+++.+++. ..+++|++++|.|+..+. ++ +.||.
T Consensus 316 ~~~~~~G~iV~-G~Vv~i~~~-~v~VdiG~K~---eGiI~~~E~~--------~~~kvGd~i~~~V~~~~~-~~-~~LS~ 380 (863)
T PRK12269 316 FEAPEPGSVRM-GTVVQVNAG-TVFVDIGGKS---EGRVPVEEFE--------APPKAGDGVRVYVERVTP-YG-PELSK 380 (863)
T ss_pred cccCCCCCEEE-EEEEEEECC-EEEEEeCCCc---eEEeEHHHhc--------cCCCCCCEEEEEEEEEcC-Cc-eEEEe
Confidence 45688999998 799999998 8999998652 8999998773 237999999999999886 45 67886
Q ss_pred ecccccc-cccccccCCCCCeEEEEEEEEe--cCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEEeC
Q 000176 482 KASAFEG-LVFTHSDVKPGMVVKGKVIAVD--SFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKS 558 (1924)
Q Consensus 482 k~~~~~~-~~~~~~~l~~G~~v~g~V~~v~--~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v~~ 558 (1924)
+...... +.--.+.+..|++|+|+|++++ +.|++|+++.+++||||.+|++.-...++. ..+|++++++|+.++.
T Consensus 381 ~~~~~~~~~~~l~~a~~~g~~V~G~Vv~v~~~kgG~~Vdig~~~~gfiP~se~~~~~~~~~~--~~vG~~ie~~V~~~~~ 458 (863)
T PRK12269 381 TKADRLGLKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDLGAGMMAFLPISQSDCQKVDAPE--SLIGLTSKFYIERISQ 458 (863)
T ss_pred hHhhhhHHHHHHHHHHhCCCeEEEEEEEEEeecCEEEEEECCCcEEEEEHHHhccccccchH--HhCCCeEEEEEEEEec
Confidence 6443222 2222456789999999999985 469999998789999999998642222222 3499999999998832
Q ss_pred -------CeEEEEEccccccchhhHhh-hhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCC
Q 000176 559 -------KRITVTHKKTLVKSKLAILS-SYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMY 630 (1924)
Q Consensus 559 -------~~l~lT~K~~Lv~~~~~~~~-~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~ 630 (1924)
++++||+|+.+.......+. .|+++++|+++.|+|.++.++|+||+| +|++||+|.|+++|.++.+|.+.|
T Consensus 459 ~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~l~~G~~V~G~Vk~i~~~G~fVdl-~Gv~Gfvp~SeiS~~~v~~~~~~~ 537 (863)
T PRK12269 459 SKQHRGNDNIVINRRRYLEERARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDL-GGFDGLLHVNDMSWGHVARPREFV 537 (863)
T ss_pred ccccCCCCeEEEEHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEEEEeCCcEEEEE-CCEEEEEEchhccccccCCHHHhc
Confidence 48999999987654443333 367788999999999999999999999 789999999999999888999999
Q ss_pred CCCCEEEEEEEEEcCCCCEEEEEEeeCC-CCccc-ccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCC-
Q 000176 631 HVGQVVKCRIMSSIPASRRINLSFMMKP-TRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH- 707 (1924)
Q Consensus 631 ~vGq~v~~rVl~vd~~~~ri~lS~k~~~-~~~~~-~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~- 707 (1924)
++||+|+|+|+++|++++++.||+|+.. .+|.. .+.+++|++|+|+|++++++|++|++ .++++|+||.+++|+.
T Consensus 538 kvGq~v~vkVi~iD~e~~rI~LSlK~l~~~p~~~~~~~~~vG~iV~G~V~~I~~fG~fVeL--~~gveGLvhiSEls~~~ 615 (863)
T PRK12269 538 KKGQTIELKVIRLDQAEKRINLSLKHFQPDPWLEFENKFGVNDVVKGRVTKIADFGAFIEL--AEGIEGLAHISEFSWVK 615 (863)
T ss_pred cCCCEEEEEEEEEecCCCeEEEEEeccccchhhhhhccCCCCCEEEEEEEEEeCCeEEEEe--cCCceeeeEHHHhcCcc
Confidence 9999999999999999999999999753 34433 35689999999999999999999999 7799999999999862
Q ss_pred ccchhhhccccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeE
Q 000176 708 LEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLT 786 (1924)
Q Consensus 708 ~~~~~~~~~~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~ 786 (1924)
...+ ..+.|++||+|+ +++.+|.+++++.||+|+...++|..+. +.+++|++++|+|++++++|+||++.+|+.
T Consensus 616 ~~~~--p~~~~kvGd~V~vkVl~iD~e~~rIsLS~K~l~~~Pw~~~~---~~~~vG~~v~G~V~~i~~~G~fV~l~~gV~ 690 (863)
T PRK12269 616 KTSK--PSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIE---ARYPVGARFTRRIVKVTNAGAFIEMEEGID 690 (863)
T ss_pred ccCC--HHHcCCCCCEEEEEEEEEecccCceEEEehhcccCchHHHH---HhCCCCCEEEEEEEEEecceEEEEeCCCcE
Confidence 2122 345799999999 8999999999999999999999888753 457899999999999999999999999999
Q ss_pred EEecCCccCcccccC-cccCCCCCCEEEEEEEEeeCCCCeEEEeecccccCCCchhhHHHHHHHHHHHHHhhcccCCCcc
Q 000176 787 GFAPRSKAVDGQRAD-LSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSE 865 (1924)
Q Consensus 787 Glv~~s~~s~~~~~~-~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1924)
||+|.++++|..... +...|++||.|+|+|+++|++++|+.||+|+... .||
T Consensus 691 GlIh~sels~~~~~~~~~~~~kvGq~VkvkVl~ID~e~rrI~LS~K~l~~---------------------------dpw 743 (863)
T PRK12269 691 GFLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQLSD---------------------------NPW 743 (863)
T ss_pred EEEEhHHhhccccccchhhccCCCCEEEEEEEEEeccCCEEEEEeccccc---------------------------ChH
Confidence 999999999876544 4568999999999999999999999999997643 246
Q ss_pred ccccccccCccEEEEEEEEEecceeEEEeccCCceeEEEeeeecCCc----------ccccCCeEEEEEEEeeccccEEE
Q 000176 866 LKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA----------TVESGSVIQAAILDVAKAERLVD 935 (1924)
Q Consensus 866 ~~~~~~~~vG~~v~g~V~~i~~~g~~v~l~~~~~v~g~i~~~~l~~~----------~~~~G~~v~~~Vl~vd~~~~~v~ 935 (1924)
..+...+++|+.++|+|.++.++|++|++++ ++.|++|.+|+++. .+++||++++.|+.+|..++.+.
T Consensus 744 ~~~~~~~~vG~iV~GkV~~v~~~GvFVeL~~--gVeGlI~~s~lsdd~~~~~~~~~~~f~vGD~V~v~Vl~iD~~~rkI~ 821 (863)
T PRK12269 744 QVFANAYGVGSTVEGEVSSVTDFGIFVRVPG--GVEGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVA 821 (863)
T ss_pred HHHHhhCCCCCEEEEEEEEEecCeEEEEcCC--CeEEEEEHHHcCCcccccchhhccccCCCCEEEEEEEEEEcCCCEEE
Confidence 6667779999999999999999999999976 69999999999853 37899999999999999999999
Q ss_pred Eeechhhhh
Q 000176 936 LSLKTVFID 944 (1924)
Q Consensus 936 ls~k~~l~~ 944 (1924)
||+|+.-..
T Consensus 822 LSlk~~~~~ 830 (863)
T PRK12269 822 FSVRDYQRK 830 (863)
T ss_pred EEEechhhH
Confidence 999976654
No 9
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=9.7e-53 Score=548.84 Aligned_cols=496 Identities=22% Similarity=0.301 Sum_probs=425.4
Q ss_pred CCCCCCCeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEeecCCeEEEEee
Q 000176 403 SHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILK 482 (1924)
Q Consensus 403 ~~~~~G~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~k 482 (1924)
..+..|++++ ++|.+++.+ |++|+++.+ +.||+|.+++++.+ ....|++|++++|+|+.++..++.+++|.+
T Consensus 26 ~~~~~G~~v~-G~V~~v~~~-~~~Vdig~k---~~g~lp~~e~~~~~---~~~~~~vG~~i~~~V~~~~~~~~~i~lS~k 97 (565)
T PRK06299 26 SETREGSIVK-GTVVAIDKD-YVLVDVGLK---SEGRIPLEEFKNEQ---GELEVKVGDEVEVYVERIEDGFGETVLSRE 97 (565)
T ss_pred ccCCCCCEEE-EEEEEEECC-EEEEEeCCC---eEEEEEHHHhcCcc---ccccCCCCCEEEEEEEEEECCCCcEEEech
Confidence 3467899997 899999998 999999743 38999999987532 123599999999999999998899999988
Q ss_pred cccccccccc-cccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eCC
Q 000176 483 ASAFEGLVFT-HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSK 559 (1924)
Q Consensus 483 ~~~~~~~~~~-~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~~ 559 (1924)
+.......-. .+.+++|++|+|+|+++.++|++|+++ ++.||+|.+|+++....++. +.+|++++|+|+.+ +++
T Consensus 98 ~~~~~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~~~-g~~gfip~s~~~~~~~~~~~--~~vG~~i~~~V~~~d~~~~ 174 (565)
T PRK06299 98 KAKRLEAWDKLEKAFENGEIVEGVINGKVKGGFTVDLN-GVEAFLPGSQVDVRPVRDTD--PLEGKELEFKVIKLDKKRN 174 (565)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEEEEEECCEEEEEEC-CEEEEEEHHHccCcCCCChH--HhCCCEEEEEEEEEECCCC
Confidence 6644332222 346788999999999999999999998 89999999999985444443 56999999999999 468
Q ss_pred eEEEEEccccccchhhHh-hhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEE
Q 000176 560 RITVTHKKTLVKSKLAIL-SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKC 638 (1924)
Q Consensus 560 ~l~lT~K~~Lv~~~~~~~-~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~ 638 (1924)
++.||+|..+.......+ ..+.++++|+++.|+|+++.++|+||+++ |+.||+|.++++|.+..+|.+.|++||+|+|
T Consensus 175 ~i~lS~k~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~~~~~~~~~kvG~~v~v 253 (565)
T PRK06299 175 NIVVSRRAVLEEERAEEREELLENLEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKRVNHPSEVVNVGDEVKV 253 (565)
T ss_pred EEEEEhHHhhhhhhhhHHHHHHhcCCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccccCCHhhcCCCCCEEEE
Confidence 999999998755433222 33567899999999999999999999995 8999999999999988899999999999999
Q ss_pred EEEEEcCCCCEEEEEEeeC-CCCccc-ccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhcc
Q 000176 639 RIMSSIPASRRINLSFMMK-PTRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716 (1924)
Q Consensus 639 rVl~vd~~~~ri~lS~k~~-~~~~~~-~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~ 716 (1924)
+|+++|++++++.||+++. ..+|.. .+.+++|+++.|+|++++++|++|.+ .+++.|+||..+|++.... .....
T Consensus 254 ~V~~~d~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~i~~~G~fV~l--~~~v~Glv~~sel~~~~~~-~~~~~ 330 (565)
T PRK06299 254 KVLKFDKEKKRVSLGLKQLGEDPWEAIEKKYPVGSKVKGKVTNITDYGAFVEL--EEGIEGLVHVSEMSWTKKN-KHPSK 330 (565)
T ss_pred EEEEEeCCCCeEEEEEEecccChhHHHHhhCCCCCEEEEEEEEEeCCeEEEEe--CCCCEEEEEHHHcCccccc-cCHHH
Confidence 9999999999999999975 335543 35789999999999999999999999 6789999999999863211 11234
Q ss_pred ccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccC
Q 000176 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795 (1924)
Q Consensus 717 ~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s 795 (1924)
.+++|+.++ +++.+|.+++++.||+|+++.++|.... .++++|+++.|.|++++++|+||++.+++.||+|.++++
T Consensus 331 ~~~~G~~v~v~V~~id~~~~~i~ls~k~~~~~p~~~~~---~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~g~i~~s~l~ 407 (565)
T PRK06299 331 VVSVGQEVEVMVLEIDEEKRRISLGLKQCKENPWEEFA---EKYPVGDVVEGKVKNITDFGAFVGLEGGIDGLVHLSDIS 407 (565)
T ss_pred hcCCCCEEEEEEEEEcCCCCEEEEehHHhccchhhhHH---HhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHcC
Confidence 689999999 7889999999999999999888776533 447889999999999999999999998999999999999
Q ss_pred cccc-cCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccccCCCchhhHHHHHHHHHHHHHhhcccCCCccccccccccC
Q 000176 796 DGQR-ADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874 (1924)
Q Consensus 796 ~~~~-~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 874 (1924)
+.+. .++.+.|++||.|+|+|+++|++++|+.||+|++.. +||..+...+++
T Consensus 408 ~~~~~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ls~k~~~~---------------------------~p~~~~~~~~~~ 460 (565)
T PRK06299 408 WDKKGEEAVELYKKGDEVEAVVLKVDVEKERISLGIKQLEE---------------------------DPFEEFAKKHKK 460 (565)
T ss_pred ccccccChHhhCCCCCEEEEEEEEEeCCCCEEEEEEehhhc---------------------------CchhHHHhhcCC
Confidence 8776 788899999999999999999999999999997743 345566778999
Q ss_pred ccEEEEEEEEEecceeEEEeccCCceeEEEeeeecCCc-------ccccCCeEEEEEEEeeccccEEEEeechhhhhh
Q 000176 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA-------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945 (1924)
Q Consensus 875 G~~v~g~V~~i~~~g~~v~l~~~~~v~g~i~~~~l~~~-------~~~~G~~v~~~Vl~vd~~~~~v~ls~k~~l~~~ 945 (1924)
|+.|.|+|..+.++|++|.+.+ ++.|++|.+++++. .+++||.++|+|+.+|..++.+.||+|+.....
T Consensus 461 G~vV~G~V~~v~~~G~fV~l~~--gi~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V~~vd~~~~~i~LS~k~~~~~~ 536 (565)
T PRK06299 461 GSIVTGTVTEVKDKGAFVELED--GVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRISLSIKALDEAE 536 (565)
T ss_pred CCEEEEEEEEEecCceEEecCC--CcEEEEEHHHhcchhccCccccCCCCCEEEEEEEEEccccCEEEEEeeehhhhh
Confidence 9999999999999999999974 79999999999753 579999999999999999999999999876644
No 10
>TIGR00717 rpsA ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned.
Probab=100.00 E-value=4.7e-52 Score=538.46 Aligned_cols=490 Identities=22% Similarity=0.292 Sum_probs=419.9
Q ss_pred cccCCCceEEEEEEEEecCeEEEEecCceEEEEeccccCCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeCcccc
Q 000176 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396 (1924)
Q Consensus 317 ~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~g~v~~~hl~~~~~~~~~~~~~~~G~~v~arVl~~~~~~k~v~lSl~p~~~ 396 (1924)
..+.||++|.|+|.+|.++|+.|+|++..+|+++..+++... ..|++|+.+.++|+.+.+...++.||+.+...
T Consensus 14 ~~~~~G~~v~g~V~~i~~~~~~v~~g~k~~g~i~~~E~~~~~------~~~~vGd~i~~~V~~~~~~~g~i~lS~~~~~~ 87 (516)
T TIGR00717 14 EETRPGSIVKGTVVAINKDTVFVDVGLKSEGRIPKEEFLDAP------LEIQVGDEVEVYLDRVEDRFGETVLSREKAQR 87 (516)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEcCCCcEEEEEHHHhcCCc------cCCCCCCEEEEEEEEEeCCCCcEEEEHHHhhh
Confidence 458999999999999999999999999999999999887532 46999999999999998888899999986542
Q ss_pred c--cCCCCCCCCCCCeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEeecC
Q 000176 397 H--NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474 (1924)
Q Consensus 397 ~--~~~~~~~~~~G~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d 474 (1924)
. |.....++..|.+++ ++|.++..+ |++|+++ .++||+|.+++........ .+.+|++++|+|+.++...
T Consensus 88 ~~~~~~l~~a~~~g~~v~-g~V~~~~~~-g~~V~i~----g~~~flP~s~~~~~~~~~~--~~~vG~~i~~~v~~~~~~~ 159 (516)
T TIGR00717 88 HELWIKLEKAYEEGSIVE-GKIVGKVKG-GFIVDLN----GVEAFLPGSQVDVKPIKDL--DSLIGKTLKFKIIKLDQKR 159 (516)
T ss_pred hHHHHHHHHHhhCCCeEE-EEEEEEECC-EEEEEEC----CEEEEEeHHHhcCcccCch--hhhCCCEEEEEEEEEECCC
Confidence 2 222234678999998 789999988 9999997 2489999999864322222 3679999999999999988
Q ss_pred CeEEEEeecccccc----cccccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEE
Q 000176 475 GLATGILKASAFEG----LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550 (1924)
Q Consensus 475 ~~~~~s~k~~~~~~----~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk 550 (1924)
+.+++|.++..-+. ....+.++++|++|+|+|+++.++|++|+++ +++||+|.+++++.+..+|...|++|++|+
T Consensus 160 ~~iv~Srk~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~~~~~~~~~~vG~~v~ 238 (516)
T TIGR00717 160 NNIVVSRRAYLEEERSQAREELLENLKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKRVKHPSEYVKVGQEVK 238 (516)
T ss_pred CcEEEEHHHHHHHHHHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCCCCCHHHhccCCCEEE
Confidence 99999977543221 1234678999999999999999999999996 799999999999988888888999999999
Q ss_pred EEEEEE--eCCeEEEEEccccccchhhHhhhh-cccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCC-CCCCC
Q 000176 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEP 626 (1924)
Q Consensus 551 ~rVl~v--~~~~l~lT~K~~Lv~~~~~~~~~~-~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~-~~~~~ 626 (1924)
|+|+++ +++++.||+|....+ +|..+ +.+++|+++.|+|+++.++|+||++.+++.||+|.+++++. ...+|
T Consensus 239 v~Vl~~d~~~~~i~lS~k~~~~~----p~~~~~~~~~~G~i~~g~V~~v~~~G~fV~l~~~v~g~v~~sels~~~~~~~~ 314 (516)
T TIGR00717 239 VKVIKFDKEKGRISLSLKQLGED----PWEAIEKKFPVGDKITGRVTNLTDYGVFVEIEEGIEGLVHVSEMSWVKKNSHP 314 (516)
T ss_pred EEEEEEECCCCcEEEEEEecchh----HHHHHHhhccCCCEEEEEEEEeeCCcEEEEeCCCCEEEEEHHHcCCccccCCH
Confidence 999999 467899999987544 23443 35789999999999999999999999999999999999875 34566
Q ss_pred CCCCCCCCEEEEEEEEEcCCCCEEEEEEeeCC-CCcc-cccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcC
Q 000176 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704 (1924)
Q Consensus 627 ~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~~-~~~~-~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~L 704 (1924)
.+.|++||.|+|+|+++|++++++.||+++.. .++. ..+.+++|++++|+|++++++|++|.+ .+++.|+||..+|
T Consensus 315 ~~~~~vG~~v~v~V~~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l--~~~v~glv~~s~l 392 (516)
T TIGR00717 315 SKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANPWEQFEEKHPVGDRVTGKIKKITDFGAFVEL--EGGIDGLIHLSDI 392 (516)
T ss_pred HHhccCCCEEEEEEEEEcCCCCEEEEEehhcccCcHHHHHHhCCCCCEEEEEEEEEecceEEEEC--CCCCEEEEEHHHC
Confidence 67899999999999999999999999998753 3443 224688999999999999999999999 6799999999999
Q ss_pred CCCccchhhhccccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECC
Q 000176 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783 (1924)
Q Consensus 705 sd~~~~~~~~~~~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~ 783 (1924)
++.... ....+.+++|+.+. +++.+|++++++.||+|+++.++|... .+++++|+++.|+|++++++|+||++.+
T Consensus 393 s~~~~~-~~~~~~~~~G~~V~~~Vl~vd~~~~~i~ls~K~~~~~p~~~~---~~~~~~G~~v~g~V~~v~~~G~fV~l~~ 468 (516)
T TIGR00717 393 SWDKDG-READHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTENPWEKF---AAKYKVGSVVKGKVTEIKDFGAFVELPG 468 (516)
T ss_pred cCcccC-CCHhHccCCCCEEEEEEEEEeCcCCEEEEeeccccCCchhhh---hhccCcceEEEEEEEEEecceEEEEcCC
Confidence 974321 11346899999999 789999999999999999988887543 3568899999999999999999999999
Q ss_pred CeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeec
Q 000176 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1924)
Q Consensus 784 ~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk 831 (1924)
++.||+|.+++++++..++.+.|++||.|+|+|+++|.+++|+.||+|
T Consensus 469 ~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~id~~~~~i~ls~k 516 (516)
T TIGR00717 469 GVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKVSLSVK 516 (516)
T ss_pred CeEEEEEHHHcCccccccccccCCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999986
No 11
>PRK13806 rpsA 30S ribosomal protein S1; Provisional
Probab=100.00 E-value=2.8e-51 Score=519.01 Aligned_cols=419 Identities=19% Similarity=0.284 Sum_probs=360.3
Q ss_pred CCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEcccccCCccccccccccccCCCCEEEEEEEeeecCCCCccceeEEE
Q 000176 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138 (1924)
Q Consensus 1059 ~~~~~G~~v~g~V~~v~~~~l~V~l~~~~~G~i~~~e~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~~~~~~~~eL 1138 (1924)
..+.+|++|+|+|++|.+++++|+++.+.+|+|+.+|+.+.+.+ ..+++|++|+|+|++++. ..+.|
T Consensus 30 ~~~~~G~~v~G~V~~v~~~~v~Vdig~k~eg~ip~~e~~~~~~~------~~~~~G~~i~~~Vi~~~~-------~~~~l 96 (491)
T PRK13806 30 TELRVGDKITGTVIAITEDSVFVDTGSKVDGVVDRAELLDADGE------LTVAVGDEVELYVVSVNG-------QEIRL 96 (491)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEECCCcEEEEEHHHhcCcccc------ccccCCCEEEEEEEEEcC-------CEEEE
Confidence 34889999999999999999999999999999999999754321 357999999999999861 24788
Q ss_pred eeccccccccccccccccccccCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEccccCCCCchhhhhccccCCCCEEEE
Q 000176 1139 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218 (1924)
Q Consensus 1139 S~r~~~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~ 1218 (1924)
|++... ...+ ..+.+ .++.|+.++|+|.++.++|++|++. +++|++|.+++++.. ..++.. + +|+.++|
T Consensus 97 S~~~~~-~~~~----~~l~~-~~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~--~~~~~~-~-vG~~i~~ 165 (491)
T PRK13806 97 SKALSG-QGGA----AMLEE-AYENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRY--VEDPES-Y-VGQTFQF 165 (491)
T ss_pred EhHHhh-hhhH----HHHHH-HHhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhcccc--CCChHH-c-CCCeEEE
Confidence 966431 1111 11222 2689999999999999999999998 899999999988753 223332 3 9999999
Q ss_pred EEEEEeCCCcEEEEEeccccccc-ccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEeCCceEEEEeccccccc
Q 000176 1219 HVLSINKEKKLLRLVLRPFQDGI-SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297 (1924)
Q Consensus 1219 ~V~~vd~~~~~l~LS~~~~~~~~-~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~ 1297 (1924)
+|+.+|.+++++.||++...... ...|...+.+++ +|+++.|+|+++.++ |+||+|++++.|+||++|++|+
T Consensus 166 ~V~~id~~~~~v~lSrk~~~~~~~~~~~~~~~~~l~-----~G~iv~G~V~~v~~~--G~fV~l~~gv~g~v~~sels~~ 238 (491)
T PRK13806 166 LITRVEENGRNIVVSRRALLEREQKEALEAFMETVK-----EGDVVEGTVTRLAPF--GAFVELAPGVEGMVHISELSWS 238 (491)
T ss_pred EEEEEECCCCeEEEEeehhhhhhhHHHHHHHHhhCC-----CCCEEEEEEEEEeCC--eEEEEcCCCcEEEEEHHHCCCc
Confidence 99999999999999998875332 244544444555 999999999999999 9999999899999999999999
Q ss_pred ccCCCCCCCCCCCEEEEEEEEEecccCC-ceEEEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEE
Q 000176 1298 CVSDPLSGYDEGQFVKCKVLEISRTVRG-TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVK 1376 (1924)
Q Consensus 1298 ~~~~p~~~~~~G~~v~~~Vl~vd~~~~~-~~~i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~ 1376 (1924)
+..+|...|++|+.|+|+|+++|.+.++ .+++.||+|+.. .+|| .....++++|+++.|+|+
T Consensus 239 ~~~~~~~~~~vGd~i~vkVl~id~~~~~~~~ri~lS~K~~~-----~~p~------------~~~~~~~~~G~~v~G~V~ 301 (491)
T PRK13806 239 RVQKADEAVSVGDTVRVKVLGIERAKKGKGLRISLSIKQAG-----GDPW------------DTVGDRLKAGDKVTGKVV 301 (491)
T ss_pred cccChhHhcCCCCEEEEEEEEEecccCCcceEEEEEehhhh-----cccc------------hhhhccCCCCCEEEEEEE
Confidence 9999999999999999999999976210 158999999986 4443 444568999999999999
Q ss_pred EEeeceEEEEeCCCcEEEEECccCCC-cccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccccchhcccccccc
Q 000176 1377 NVTSKGCFIMLSRKLDAKVLLSNLSD-GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNL 1455 (1924)
Q Consensus 1377 ~v~~~G~fV~l~~~v~g~v~~selsd-~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l 1455 (1924)
++.++|+||+|+++++|+||+++|+| .++.+|.+.|++||.|+++|+++|+++++|.||+|+...+||... ..++
T Consensus 302 ~v~~~G~fV~l~~gv~Glvh~sels~~~~~~~~~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~~~~----~~~~ 377 (491)
T PRK13806 302 RLAPFGAFVEILPGIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPWADV----AERF 377 (491)
T ss_pred EEeCceEEEEeCCCcEEEEEHHHcCcccccCCHHHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChhHHh----hhhC
Confidence 99999999999999999999999999 467889999999999999999999999999999999988887543 5689
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
++|++|+|+|+++.+||+||+|.+ ++.||||+|+++|.+..++.+.|++||.|+|+|+++|++++||+||+|..
T Consensus 378 ~vG~~v~G~V~~i~~~G~FV~l~~-gv~Gli~~se~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~Ls~~~~ 451 (491)
T PRK13806 378 APGTTVTGTVEKRAQFGLFVNLAP-GVTGLLPASVISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLAPAGA 451 (491)
T ss_pred CCCCEEEEEEEEEecCceEEEcCC-CcEEEEEHHHcCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEEEeehh
Confidence 999999999999999999999987 89999999999999998899999999999999999999999999999963
No 12
>PRK13806 rpsA 30S ribosomal protein S1; Provisional
Probab=100.00 E-value=2.8e-46 Score=473.46 Aligned_cols=411 Identities=20% Similarity=0.284 Sum_probs=351.2
Q ss_pred CCCCCCeEEeeEEEEEeCCceEEEEcCCCCCccceEEeccchhhHHHHhhhhcccCCCEEEEEEEEEeecCCeEEEEeec
Q 000176 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483 (1924)
Q Consensus 404 ~~~~G~iv~~~~V~~~~~~~G~~v~~~~~~~~~~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~k~ 483 (1924)
.+.+|++++ ++|++++.+ |++|+++.+. .||+|.+++.+.. ....|++|++++|+|++++. +.+.+|.+.
T Consensus 31 ~~~~G~~v~-G~V~~v~~~-~v~Vdig~k~---eg~ip~~e~~~~~---~~~~~~~G~~i~~~Vi~~~~--~~~~lS~~~ 100 (491)
T PRK13806 31 ELRVGDKIT-GTVIAITED-SVFVDTGSKV---DGVVDRAELLDAD---GELTVAVGDEVELYVVSVNG--QEIRLSKAL 100 (491)
T ss_pred cCCCCCEEE-EEEEEEECC-EEEEEECCCc---EEEEEHHHhcCcc---ccccccCCCEEEEEEEEEcC--CEEEEEhHH
Confidence 378999998 789999998 9999998542 8999998886431 12349999999999999874 457777543
Q ss_pred ccccccccccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eCCeE
Q 000176 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561 (1924)
Q Consensus 484 ~~~~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~~~l 561 (1924)
.....+..-.+.+.+|++|+|+|+++.++|++|++. ++.||+|.+|+++....+|.. | +|++++|+|+.+ +++++
T Consensus 101 ~~~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~~~~~~~-~-vG~~i~~~V~~id~~~~~v 177 (491)
T PRK13806 101 SGQGGAAMLEEAYENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRYVEDPES-Y-VGQTFQFLITRVEENGRNI 177 (491)
T ss_pred hhhhhHHHHHHHHhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhccccCCChHH-c-CCCeEEEEEEEEECCCCeE
Confidence 221222223567889999999999999999999997 799999999998866666664 4 999999999999 35799
Q ss_pred EEEEccccccchhhHhhh-hcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEE
Q 000176 562 TVTHKKTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640 (1924)
Q Consensus 562 ~lT~K~~Lv~~~~~~~~~-~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rV 640 (1924)
.||+|..+.......+.. +..+++|+++.|+|+++.++|+||++++++.||+|.+++++....+|.+.|++||.|+|+|
T Consensus 178 ~lSrk~~~~~~~~~~~~~~~~~l~~G~iv~G~V~~v~~~G~fV~l~~gv~g~v~~sels~~~~~~~~~~~~vGd~i~vkV 257 (491)
T PRK13806 178 VVSRRALLEREQKEALEAFMETVKEGDVVEGTVTRLAPFGAFVELAPGVEGMVHISELSWSRVQKADEAVSVGDTVRVKV 257 (491)
T ss_pred EEEeehhhhhhhHHHHHHHHhhCCCCCEEEEEEEEEeCCeEEEEcCCCcEEEEEHHHCCCccccChhHhcCCCCEEEEEE
Confidence 999998776544444444 4467899999999999999999999988999999999999998889999999999999999
Q ss_pred EEEcCCC----CEEEEEEeeCC-CCccc-ccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhh
Q 000176 641 MSSIPAS----RRINLSFMMKP-TRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714 (1924)
Q Consensus 641 l~vd~~~----~ri~lS~k~~~-~~~~~-~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~ 714 (1924)
+++|+++ +|+.||+|+.. .+|.. .+.+++|++++|+|+.++++|+||++ .++++|+||.++|++.... ...
T Consensus 258 l~id~~~~~~~~ri~lS~K~~~~~p~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l--~~gv~Glvh~sels~~~~~-~~~ 334 (491)
T PRK13806 258 LGIERAKKGKGLRISLSIKQAGGDPWDTVGDRLKAGDKVTGKVVRLAPFGAFVEI--LPGIEGLVHVSEMSWTRRV-NKP 334 (491)
T ss_pred EEEecccCCcceEEEEEehhhhcccchhhhccCCCCCEEEEEEEEEeCceEEEEe--CCCcEEEEEHHHcCccccc-CCH
Confidence 9999886 48999998763 34543 36789999999999999999999999 7789999999999863211 223
Q ss_pred ccccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCc
Q 000176 715 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793 (1924)
Q Consensus 715 ~~~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~ 793 (1924)
.+.+++||.++ +++.+|++++++.||+|+...++|.... +++++|++++|+|+++++||+||++.+|+.||||+|+
T Consensus 335 ~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~~~~~---~~~~vG~~v~G~V~~i~~~G~FV~l~~gv~Gli~~se 411 (491)
T PRK13806 335 EDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPWADVA---ERFAPGTTVTGTVEKRAQFGLFVNLAPGVTGLLPASV 411 (491)
T ss_pred HHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChhHHhh---hhCCCCCEEEEEEEEEecCceEEEcCCCcEEEEEHHH
Confidence 56799999999 8889999999999999999999888754 4688999999999999999999999999999999999
Q ss_pred cCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000176 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1924)
Q Consensus 794 ~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~ 833 (1924)
+++++..++.+.|++||.|+|+|+++|++++|++||++..
T Consensus 412 ~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~Ls~~~~ 451 (491)
T PRK13806 412 ISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLAPAGA 451 (491)
T ss_pred cCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEEEeehh
Confidence 9999999999999999999999999999999999999965
No 13
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=1.6e-43 Score=438.74 Aligned_cols=333 Identities=27% Similarity=0.392 Sum_probs=294.0
Q ss_pred CCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEecccccc
Q 000176 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240 (1924)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~~ 1240 (1924)
++.|++|+|+|.++.++++||++++.++|+||..++++.. ..++...|++|+.|+|+|+++++.++++.||++....
T Consensus 33 ~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~--~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~- 109 (486)
T PRK07899 33 FNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKH--DVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY- 109 (486)
T ss_pred CCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccc--cCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc-
Confidence 6999999999999999999999999999999999999854 3467778999999999999999999999999998642
Q ss_pred cccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEe
Q 000176 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEIS 1320 (1924)
Q Consensus 1241 ~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd 1320 (1924)
..+|....+.++ .|+++.|+|+++.++ |++|++ |+.|++|.+++++.+..++.. | +|+.|+|+|+++|
T Consensus 110 -~~~w~~ie~~~e-----~g~~V~G~V~~v~k~--G~~Vdl--Gi~gflP~Sel~~~~~~~~~~-~-vGq~V~vkVleid 177 (486)
T PRK07899 110 -ERAWGTIEKIKE-----KDGVVTGTVIEVVKG--GLILDI--GLRGFLPASLVEMRRVRDLQP-Y-IGQEIEAKIIELD 177 (486)
T ss_pred -cchHHHHHHHhc-----CCCEEEEEEEEEECC--eEEEEE--CCEEEEEhhHhcccccCChhh-c-CCCEEEEEEEEEE
Confidence 345654444444 899999999999998 999999 589999999998876666543 3 8999999999999
Q ss_pred cccCCceEEEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccC
Q 000176 1321 RTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL 1400 (1924)
Q Consensus 1321 ~~~~~~~~i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~sel 1400 (1924)
.+ ++++.||+|... .... ..++...+.++++|+++.|+|++++++|+||+|+ +++||||+++|
T Consensus 178 ~~---~~~ivLSrr~~l-----~~~~--------~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdlg-gv~Glv~~Sel 240 (486)
T PRK07899 178 KN---RNNVVLSRRAWL-----EQTQ--------SEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLG-GVDGLVHVSEL 240 (486)
T ss_pred CC---CCEEEEEhHHHH-----Hhhh--------HHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHC
Confidence 86 679999999754 1000 1223455678999999999999999999999997 79999999999
Q ss_pred CCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecC
Q 000176 1401 SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT 1480 (1924)
Q Consensus 1401 sd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~ 1480 (1924)
+|.++.+|.+.|++||.|+++|+++|++++||.||+|+...+||.. ....+++|+++.|+|+++.+||+||+|.+
T Consensus 241 s~~~v~~~~~~~kvGd~V~vkVl~iD~e~~rI~LSlK~~~~dPw~~----~~~~~~vG~vv~G~V~~I~~fGvFVeL~~- 315 (486)
T PRK07899 241 SWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ----FARTHAIGQIVPGKVTKLVPFGAFVRVEE- 315 (486)
T ss_pred CCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeeccccchhh----hHHhcCCCCEEEEEEEEEeccEEEEEeCC-
Confidence 9999999999999999999999999999999999999998888743 24568899999999999999999999986
Q ss_pred ceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1481 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1481 ~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
++.||||+|++++.++.++.+.|++||.|+|+|+++|++++||+||+|+.
T Consensus 316 gieGLvh~SeLs~~~v~~~~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~ 365 (486)
T PRK07899 316 GIEGLVHISELAERHVEVPEQVVQVGDEVFVKVIDIDLERRRISLSLKQA 365 (486)
T ss_pred CcEEEEEHHHcCcccccCccceeCCCCEEEEEEEEEECCCCEEEEEEEEc
Confidence 89999999999999998899999999999999999999999999999985
No 14
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=1e-40 Score=413.77 Aligned_cols=328 Identities=21% Similarity=0.265 Sum_probs=289.1
Q ss_pred cccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEccccc
Q 000176 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 570 (1924)
Q Consensus 493 ~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~~~l~lT~K~~Lv 570 (1924)
+..+++|++|+|+|++++++|++|+|+.+++|+||..|+++.+..+|++.|++|++|+|.|+.+ ..+++.||+|+...
T Consensus 30 ~~~~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~ 109 (486)
T PRK07899 30 IKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY 109 (486)
T ss_pred HhcCCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccccCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc
Confidence 4568999999999999999999999988899999999999988889999999999999999999 35799999998654
Q ss_pred cchhhHhhhhcccC-CCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCE
Q 000176 571 KSKLAILSSYAEAT-DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649 (1924)
Q Consensus 571 ~~~~~~~~~~~~~~-~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~r 649 (1924)
. ..|..++++. .|+++.|+|+++.++|+||+| |++||+|.|++++.+..++.. .+||+|+|+|+++|+++++
T Consensus 110 ~---~~w~~ie~~~e~g~~V~G~V~~v~k~G~~Vdl--Gi~gflP~Sel~~~~~~~~~~--~vGq~V~vkVleid~~~~~ 182 (486)
T PRK07899 110 E---RAWGTIEKIKEKDGVVTGTVIEVVKGGLILDI--GLRGFLPASLVEMRRVRDLQP--YIGQEIEAKIIELDKNRNN 182 (486)
T ss_pred c---chHHHHHHHhcCCCEEEEEEEEEECCeEEEEE--CCEEEEEhhHhcccccCChhh--cCCCEEEEEEEEEECCCCE
Confidence 4 3466776664 799999999999999999999 699999999998876666654 4999999999999999999
Q ss_pred EEEEEeeCCC-----Cc-ccccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhccccCCCCe
Q 000176 650 INLSFMMKPT-----RV-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723 (1924)
Q Consensus 650 i~lS~k~~~~-----~~-~~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~~~~~G~~ 723 (1924)
+.||+|.... ++ .....+++|++++|+|++++++|++|.+ ++++|+||.++||+....+ ..+.+++|++
T Consensus 183 ivLSrr~~l~~~~~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdl---ggv~Glv~~Sels~~~v~~--~~~~~kvGd~ 257 (486)
T PRK07899 183 VVLSRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHIDH--PSEVVEVGQE 257 (486)
T ss_pred EEEEhHHHHHhhhHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEE---CCEEEEEEHHHCCCcccCC--HHHhcCCCCE
Confidence 9999984311 11 1235788999999999999999999999 4699999999999854332 3457999999
Q ss_pred Ee-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCc
Q 000176 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802 (1924)
Q Consensus 724 i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~ 802 (1924)
|+ +++.+|+++++|.||+|+.+.++|.... ..+++|+++.|+|++++++|+||++.+|+.||+|.+++++.++..+
T Consensus 258 V~vkVl~iD~e~~rI~LSlK~~~~dPw~~~~---~~~~vG~vv~G~V~~I~~fGvFVeL~~gieGLvh~SeLs~~~v~~~ 334 (486)
T PRK07899 258 VTVEVLDVDMDRERVSLSLKATQEDPWQQFA---RTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVP 334 (486)
T ss_pred EEEEEEEEECCCCEEEEEEeeccccchhhhH---HhcCCCCEEEEEEEEEeccEEEEEeCCCcEEEEEHHHcCcccccCc
Confidence 99 7899999999999999999988886533 3367899999999999999999999999999999999999888889
Q ss_pred ccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 803 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 803 ~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
...|++||+|.|+|+++|++++|+.||+|+...
T Consensus 335 ~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~~~ 367 (486)
T PRK07899 335 EQVVQVGDEVFVKVIDIDLERRRISLSLKQANE 367 (486)
T ss_pred cceeCCCCEEEEEEEEEECCCCEEEEEEEEccc
Confidence 999999999999999999999999999998865
No 15
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=5.2e-40 Score=410.33 Aligned_cols=336 Identities=26% Similarity=0.426 Sum_probs=295.5
Q ss_pred CCCCCEEEEEEEEEECCeEEEEe-CCCeEEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEeccccc
Q 000176 1161 VSIGQRVTGYVYKVDNEWALLTI-SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239 (1924)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~~~v~l-~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~ 1239 (1924)
+++|++++|+|.++.++++||++ ++++.|++|..++++.. ..++...|++|+.++|+|+.++.+++++.||++...
T Consensus 15 ~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~--~~~~~~~~~vGd~v~~~V~~v~~~~~~i~lS~k~~~- 91 (390)
T PRK06676 15 VEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDH--IEDINDVVKVGDELEVYVLKVEDGEGNLLLSKRRLE- 91 (390)
T ss_pred ccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhcccc--ccCcccccCCCCEEEEEEEEEECCCCCEEEEHHHhh-
Confidence 59999999999999999999999 88999999999998753 356777899999999999999999999999999863
Q ss_pred ccccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEE
Q 000176 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319 (1924)
Q Consensus 1240 ~~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~v 1319 (1924)
....|......++ +|+++.|+|+++.++ |++|+++ |+.|+||++|+++.+..+|.. + +|+.+.|+|+++
T Consensus 92 -~~~~~~~~~~~~~-----~G~~v~g~V~~v~~~--G~~V~~~-G~~gflp~~el~~~~~~~~~~-~-vG~~v~~~Vl~~ 160 (390)
T PRK06676 92 -AEKAWDKLEEKFE-----EGEVVEVKVTEVVKG--GLVVDVE-GVRGFIPASLISTRFVEDFSD-F-KGKTLEVKIIEL 160 (390)
T ss_pred -hhhhHHHHHHhcc-----CCCEEEEEEEEEECC--eEEEEEC-CEEEEEEHHHcCCccCCChHH-c-CCCEEEEEEEEE
Confidence 2345654444444 999999999999998 9999995 679999999999988777654 3 899999999999
Q ss_pred ecccCCceEEEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECcc
Q 000176 1320 SRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSN 1399 (1924)
Q Consensus 1320 d~~~~~~~~i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~se 1399 (1924)
|++ ++++.||+|... .... ..++...+.++++|++|.|+|+++.++|+||.++ +++|+||+++
T Consensus 161 d~~---~~~i~lS~k~~~-----~~~~--------~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~-~v~g~v~~se 223 (390)
T PRK06676 161 DPE---KNRVILSRRAVV-----EEER--------AAKKEELLSSLKEGDVVEGTVARLTDFGAFVDIG-GVDGLVHISE 223 (390)
T ss_pred ECC---CCEEEEEeHHHh-----hhhh--------hhHHHHHHhhCCCCCEEEEEEEEEecceEEEEeC-CeEEEEEHHH
Confidence 986 679999999874 1100 1123344567999999999999999999999996 7999999999
Q ss_pred CCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEec
Q 000176 1400 LSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN 1479 (1924)
Q Consensus 1400 lsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~ 1479 (1924)
++|.++.+|.+.|++|+.|+++|+++|+++++|.||+|+...+||.. ...++++|+++.|+|+++.+||+||++.+
T Consensus 224 ls~~~~~~~~~~~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~----~~~~~~~G~~v~g~V~~i~~~G~fV~l~~ 299 (390)
T PRK06676 224 LSHERVEKPSEVVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEG----VEEKLPEGDVIEGTVKRLTDFGAFVEVLP 299 (390)
T ss_pred cCccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEeecccCcccc----chhhhcCCcEEEEEEEEEeCceEEEEECC
Confidence 99999999999999999999999999999999999999988777643 35689999999999999999999999976
Q ss_pred CceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1480 TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1480 ~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
++.||||+|++++.++.++.+.|++||.|+|+|+++|++++||.||+|+...
T Consensus 300 -gi~Glv~~se~~~~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 300 -GVEGLVHISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred -CCeEEEEhHHcCccccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 8999999999999998888899999999999999999999999999998644
No 16
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=4.9e-39 Score=401.62 Aligned_cols=335 Identities=24% Similarity=0.306 Sum_probs=292.2
Q ss_pred cccccccccCCCCCeEEEEEEEEecCceEEEe-CCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eCCeEEE
Q 000176 487 EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITV 563 (1924)
Q Consensus 487 ~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l-~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~~~l~l 563 (1924)
++...++.++++|++|+|+|++++++|++|++ +++++|++|..|+++.+..+|...|++|++|+|+|+.+ +++++.|
T Consensus 6 ~~~~~~~~~~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~~~~~~~~~~vGd~v~~~V~~v~~~~~~i~l 85 (390)
T PRK06676 6 EESLNSVKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDELEVYVLKVEDGEGNLLL 85 (390)
T ss_pred HHHhhhhhcccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhccccccCcccccCCCCEEEEEEEEEECCCCCEEE
Confidence 34455788999999999999999999999999 77899999999999988889999999999999999999 4567999
Q ss_pred EEccccccchhhHhhhhcc-cCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEE
Q 000176 564 THKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1924)
Q Consensus 564 T~K~~Lv~~~~~~~~~~~~-~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~ 642 (1924)
|+|+.... +.|..+.+ .++|++++|+|+++.++||||+| +|++||+|.+++++....++.. + +||++.|+|++
T Consensus 86 S~k~~~~~---~~~~~~~~~~~~G~~v~g~V~~v~~~G~~V~~-~G~~gflp~~el~~~~~~~~~~-~-vG~~v~~~Vl~ 159 (390)
T PRK06676 86 SKRRLEAE---KAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDV-EGVRGFIPASLISTRFVEDFSD-F-KGKTLEVKIIE 159 (390)
T ss_pred EHHHhhhh---hhHHHHHHhccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcCCccCCChHH-c-CCCEEEEEEEE
Confidence 99986432 34555443 47899999999999999999999 6789999999999876666654 3 99999999999
Q ss_pred EcCCCCEEEEEEeeCCCC-----c-ccccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhcc
Q 000176 643 SIPASRRINLSFMMKPTR-----V-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716 (1924)
Q Consensus 643 vd~~~~ri~lS~k~~~~~-----~-~~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~ 716 (1924)
+|++++++.||++..... + .....+.+|++|.|+|+++++.|++|.+ ++++|+||.+|+++.... ...+
T Consensus 160 ~d~~~~~i~lS~k~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l---~~v~g~v~~sels~~~~~--~~~~ 234 (390)
T PRK06676 160 LDPEKNRVILSRRAVVEEERAAKKEELLSSLKEGDVVEGTVARLTDFGAFVDI---GGVDGLVHISELSHERVE--KPSE 234 (390)
T ss_pred EECCCCEEEEEeHHHhhhhhhhHHHHHHhhCCCCCEEEEEEEEEecceEEEEe---CCeEEEEEHHHcCccccC--CHHH
Confidence 999999999999864221 1 1235688999999999999999999999 469999999999974322 2345
Q ss_pred ccCCCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccC
Q 000176 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795 (1924)
Q Consensus 717 ~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s 795 (1924)
.+++|+.|+ +++.+|++.+++.||+|+.+.++|..+ ++++++|+++.|+|++++++|+||++.+++.||+|.++++
T Consensus 235 ~~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~~---~~~~~~G~~v~g~V~~i~~~G~fV~l~~gi~Glv~~se~~ 311 (390)
T PRK06676 235 VVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEGV---EEKLPEGDVIEGTVKRLTDFGAFVEVLPGVEGLVHISQIS 311 (390)
T ss_pred hcCCCCEEEEEEEEEeCCCCEEEEEEeecccCccccc---hhhhcCCcEEEEEEEEEeCceEEEEECCCCeEEEEhHHcC
Confidence 789999999 788999999999999999998877654 4568999999999999999999999999999999999999
Q ss_pred cccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 796 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 796 ~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
+.+..++.+.|++||.|.|+|+++|++++|+.||+|....
T Consensus 312 ~~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 312 HKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred ccccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 9888888899999999999999999999999999998765
No 17
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=6.5e-38 Score=410.50 Aligned_cols=335 Identities=24% Similarity=0.410 Sum_probs=296.6
Q ss_pred cCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEeccccc
Q 000176 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239 (1924)
Q Consensus 1160 ~~~~G~~v~g~V~~v~~~~~~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~LS~~~~~~ 1239 (1924)
.+++|+.|+|+|.++.++++||++++...|+||..+++++. ..++.+.|++|+.++|+|++++.+++++.||++.+..
T Consensus 299 ~l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~--~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~~~~ 376 (647)
T PRK00087 299 QIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDE--ISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKEADR 376 (647)
T ss_pred hccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccc--cCChhhccCCCCEEEEEEEEEECCCCcEEEEeehhcc
Confidence 36999999999999999999999999999999999999763 4567788999999999999999999999999998742
Q ss_pred ccccccccccccccccccCCCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEE
Q 000176 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319 (1924)
Q Consensus 1240 ~~~~~~~~~~~~~~~~~i~~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~v 1319 (1924)
...|....+.++ +|+++.|+|+++.++ |++|++++ ++|++|.+|+++.+..+|.. + +|+.+.|+|+++
T Consensus 377 --~~~~~~l~~~~~-----~G~iv~g~V~~v~~~--G~~V~lgg-i~gfiP~sel~~~~~~d~~~-~-vG~~v~v~Vl~v 444 (647)
T PRK00087 377 --EKAWKELEEAFE-----NGEPVKGKVKEVVKG--GLLVDYGG-VRAFLPASHVELGYVEDLSE-Y-KGQELEVKIIEF 444 (647)
T ss_pred --hhHHHHHHHHhh-----CCCEEEEEEEEEECC--eEEEEECC-EEEEEEHHHhCccccCCHHH-h-CCCEEEEEEEEE
Confidence 244554444445 999999999999998 99999984 99999999999988877654 3 899999999999
Q ss_pred ecccCCceE-EEEeeeccccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECc
Q 000176 1320 SRTVRGTFH-VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLS 1398 (1924)
Q Consensus 1320 d~~~~~~~~-i~LSlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~s 1398 (1924)
|++ +++ +.+|+|... ... ...+....++++++|+++.|+|+++.++|+||.+ ++++|++|++
T Consensus 445 d~e---~~~~l~lS~k~~~-----~~~--------~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l-~gv~Gll~~s 507 (647)
T PRK00087 445 NRK---RRKKVVLSRKAIL-----EEE--------KEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI-GGVDGLLHVS 507 (647)
T ss_pred EcC---CCcEEEEEeHHHh-----hhh--------hhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE-CCEEEEEEHH
Confidence 986 556 999998874 100 0123445567799999999999999999999999 6899999999
Q ss_pred cCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEe
Q 000176 1399 NLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIE 1478 (1924)
Q Consensus 1399 elsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~ 1478 (1924)
+++|.++.+|.+.|++||.|.++|+++|+++++|.||+|+...+||.. ...++++|+++.|+|+++.+||+||+|.
T Consensus 508 els~~~~~~~~~~~~vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~----~~~~~~~G~~v~g~V~~i~~~G~fV~l~ 583 (647)
T PRK00087 508 EISWGRVEKPSDVLKVGDEIKVYILDIDKENKKLSLSLKKLLPDPWEN----VEEKYPVGSIVLGKVVRIAPFGAFVELE 583 (647)
T ss_pred HcCccccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEeeccccChhhh----hhhhccCCeEEEEEEEEEECCeEEEEEC
Confidence 999999999999999999999999999999999999999998877654 2567899999999999999999999997
Q ss_pred cCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1479 NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1479 ~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
+ ++.||||++++++.++.++.+.|++||.|+|+|+++|++++||.||+|..
T Consensus 584 ~-~i~Gli~~sel~~~~~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~ 634 (647)
T PRK00087 584 P-GVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEV 634 (647)
T ss_pred C-CCEEEEEhhhcCccccCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeec
Confidence 6 89999999999999999999999999999999999999999999999985
No 18
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=1.4e-35 Score=388.60 Aligned_cols=332 Identities=23% Similarity=0.285 Sum_probs=290.9
Q ss_pred ccccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEcc
Q 000176 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567 (1924)
Q Consensus 490 ~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v--~~~~l~lT~K~ 567 (1924)
.....++++|++|+|+|.+++++|++|++++.++|++|..|+++....+|.+.|++|++|+|+|+.+ ..+++.||+|+
T Consensus 294 ~~~~~~l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~ 373 (647)
T PRK00087 294 NELEKQIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDEISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKE 373 (647)
T ss_pred HHHHhhccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccccCChhhccCCCCEEEEEEEEEECCCCcEEEEeeh
Confidence 3457789999999999999999999999998899999999999888889999999999999999999 46799999998
Q ss_pred ccccchhhHhhhhcc-cCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCC
Q 000176 568 TLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646 (1924)
Q Consensus 568 ~Lv~~~~~~~~~~~~-~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~ 646 (1924)
..... .|..+.+ .++|+++.|+|+++.++|+||+++ +++||+|.+++++....++.. + +|+++.|+|+++|++
T Consensus 374 ~~~~~---~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~lg-gi~gfiP~sel~~~~~~d~~~-~-vG~~v~v~Vl~vd~e 447 (647)
T PRK00087 374 ADREK---AWKELEEAFENGEPVKGKVKEVVKGGLLVDYG-GVRAFLPASHVELGYVEDLSE-Y-KGQELEVKIIEFNRK 447 (647)
T ss_pred hcchh---HHHHHHHHhhCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHhCccccCCHHH-h-CCCEEEEEEEEEEcC
Confidence 76543 2333332 478999999999999999999995 599999999998876666654 3 999999999999999
Q ss_pred CCE-EEEEEeeCCC-----C-cccccccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhccccC
Q 000176 647 SRR-INLSFMMKPT-----R-VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719 (1924)
Q Consensus 647 ~~r-i~lS~k~~~~-----~-~~~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~~~~ 719 (1924)
+++ +.+|++.... + ....+.+++|+++.|+|++++++|++|.+ ++++|+||.+++++..... ..+.|+
T Consensus 448 ~~~~l~lS~k~~~~~~~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l---~gv~Gll~~sels~~~~~~--~~~~~~ 522 (647)
T PRK00087 448 RRKKVVLSRKAILEEEKEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI---GGVDGLLHVSEISWGRVEK--PSDVLK 522 (647)
T ss_pred CCcEEEEEeHHHhhhhhhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE---CCEEEEEEHHHcCccccCC--HHHhcC
Confidence 998 9999986421 0 11235678999999999999999999999 5799999999999755332 356799
Q ss_pred CCCeEe-eEEEeecCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCccc
Q 000176 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798 (1924)
Q Consensus 720 ~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~ 798 (1924)
+|+.++ +++.+|++++++.||+|+.+.++|..+. +++++|+.+.|.|++++++|+||++.+++.||+|.+++++.+
T Consensus 523 vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~~~---~~~~~G~~v~g~V~~i~~~G~fV~l~~~i~Gli~~sel~~~~ 599 (647)
T PRK00087 523 VGDEIKVYILDIDKENKKLSLSLKKLLPDPWENVE---EKYPVGSIVLGKVVRIAPFGAFVELEPGVDGLVHISQISWKR 599 (647)
T ss_pred CCCEEEEEEEEEECCCCEEEEEeeccccChhhhhh---hhccCCeEEEEEEEEEECCeEEEEECCCCEEEEEhhhcCccc
Confidence 999999 7889999999999999999999887654 457899999999999999999999999999999999999999
Q ss_pred ccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 799 ~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
..++...|++||.|+|+|+++|++++|+.||+|....
T Consensus 600 ~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~~~ 636 (647)
T PRK00087 600 IDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVEE 636 (647)
T ss_pred cCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 9999999999999999999999999999999997754
No 19
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=1.1e-32 Score=328.80 Aligned_cols=240 Identities=23% Similarity=0.386 Sum_probs=215.6
Q ss_pred cCCCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeecc
Q 000176 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336 (1924)
Q Consensus 1257 i~~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~ 1336 (1924)
+++|+++.|+|+++.++ |++|+||.+..|++|++|+++++..+|.+.|++|+.++|+|++++.+ ++++.||+|+.
T Consensus 29 ~~~G~iv~G~V~~i~~~--g~~Vdig~k~~g~lp~sEis~~~~~~~~~~~~~G~~v~~~Vi~~~~~---~~~i~lS~k~~ 103 (318)
T PRK07400 29 FKPGDIVNGTVFSLEPR--GALIDIGAKTAAFMPIQEMSINRVEGPEEVLQPNETREFFILSDENE---DGQLTLSIRRI 103 (318)
T ss_pred cCCCCEEEEEEEEEECC--EEEEEECCCeEEEEEHHHhccccccCHHHccCCCCEEEEEEEEEeCC---CCeEEEehhhh
Confidence 55999999999999998 99999999999999999999999999999999999999999999876 67999999987
Q ss_pred ccCCCCCCCCCCCCCCCCCcchhhhhccC-CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCC
Q 000176 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDL-SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIG 1415 (1924)
Q Consensus 1337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G 1415 (1924)
. . ...|..+.++ +.|++|+|+|++++++|+||.++ |++||||+++++|.+.. +.+ +|
T Consensus 104 ~-----~------------~~~w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l~-Gv~gfip~s~ls~~~~~---~~~-vG 161 (318)
T PRK07400 104 E-----Y------------MRAWERVRQLQKEDATVRSEVFATNRGGALVRIE-GLRGFIPGSHISTRKPK---EEL-VG 161 (318)
T ss_pred h-----h------------hhHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCccCCc---ccc-CC
Confidence 5 1 1235566555 46999999999999999999996 99999999999996543 334 99
Q ss_pred cEEEEEEEEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccc
Q 000176 1416 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1495 (1924)
Q Consensus 1416 ~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~ 1495 (1924)
+.+.++|+++|+++++|.||+|+..... .+.++++|+++.|+|++|.+||+||++. ++.||||+++++|.+
T Consensus 162 ~~i~~kVl~id~~~~~i~lS~K~~~~~~-------~~~~~k~G~vv~G~V~~I~~~G~fV~i~--gv~Gllhisels~~~ 232 (318)
T PRK07400 162 EELPLKFLEVDEERNRLVLSHRRALVER-------KMNRLEVGEVVVGTVRGIKPYGAFIDIG--GVSGLLHISEISHEH 232 (318)
T ss_pred CEEEEEEEEEEcccCEEEEEhhHhhhhh-------hhccCCCCCEEEEEEEEEECCeEEEEEC--CEEEEEEHHHccccc
Confidence 9999999999999999999999766431 3678999999999999999999999994 799999999999999
Q ss_pred ccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1496 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1496 ~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
+.++.+.|++||.|+|+|+++|.+++||.||+|...-
T Consensus 233 ~~~~~~~~~vGd~VkvkVl~iD~e~~rI~LS~K~l~~ 269 (318)
T PRK07400 233 IETPHSVFNVNDEMKVMIIDLDAERGRISLSTKQLEP 269 (318)
T ss_pred ccChhhccCCCCEEEEEEEEEeCCCCEEEEEEecccc
Confidence 9999999999999999999999999999999999643
No 20
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=99.97 E-value=1.5e-30 Score=310.34 Aligned_cols=243 Identities=22% Similarity=0.301 Sum_probs=215.9
Q ss_pred hhhhc-ccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEe
Q 000176 577 LSSYA-EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1924)
Q Consensus 577 ~~~~~-~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k 655 (1924)
+.+|. .+++|+++.|+|+++.++||||+|++...||+|.+|+++..+.+|.+.|++||+++|+|+++|++++++.||++
T Consensus 22 le~~~~~~~~G~iv~G~V~~i~~~g~~Vdig~k~~g~lp~sEis~~~~~~~~~~~~~G~~v~~~Vi~~~~~~~~i~lS~k 101 (318)
T PRK07400 22 LDKYDYHFKPGDIVNGTVFSLEPRGALIDIGAKTAAFMPIQEMSINRVEGPEEVLQPNETREFFILSDENEDGQLTLSIR 101 (318)
T ss_pred HHhhHhhcCCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhccccccCHHHccCCCCEEEEEEEEEeCCCCeEEEehh
Confidence 33443 37899999999999999999999988899999999999988889999999999999999999999999999999
Q ss_pred eCC--CCccccc-ccCCCCEEEEEEEEEccCcEEEEEEecCceeEEEeCCcCCCCccchhhhccccCCCCeEe-eEEEee
Q 000176 656 MKP--TRVSEDD-LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731 (1924)
Q Consensus 656 ~~~--~~~~~~~-~~~~G~iv~g~V~~~~~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~~~~~G~~i~-~vl~id 731 (1924)
... .+|.... ....|++|+|+|+.+.+.|++|.+ ++++||||.+|||++... +. .+|+.|+ +++.+|
T Consensus 102 ~~~~~~~w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l---~Gv~gfip~s~ls~~~~~-----~~-~vG~~i~~kVl~id 172 (318)
T PRK07400 102 RIEYMRAWERVRQLQKEDATVRSEVFATNRGGALVRI---EGLRGFIPGSHISTRKPK-----EE-LVGEELPLKFLEVD 172 (318)
T ss_pred hhhhhhHHHHHHHhccCCCEEEEEEEEEECCeEEEEE---CCEEEEEEHHHcCccCCc-----cc-cCCCEEEEEEEEEE
Confidence 752 2344333 344689999999999999999999 589999999999985321 23 4999999 899999
Q ss_pred cCCCeEEEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCE
Q 000176 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 811 (1924)
Q Consensus 732 ~~~~~i~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~ 811 (1924)
++++++.||+|+.+.+. .+.++++|+++.|+|++|+++|+||++ +|+.||+|.+++++.++.++.+.|++||.
T Consensus 173 ~~~~~i~lS~K~~~~~~------~~~~~k~G~vv~G~V~~I~~~G~fV~i-~gv~Gllhisels~~~~~~~~~~~~vGd~ 245 (318)
T PRK07400 173 EERNRLVLSHRRALVER------KMNRLEVGEVVVGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVFNVNDE 245 (318)
T ss_pred cccCEEEEEhhHhhhhh------hhccCCCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcccccccChhhccCCCCE
Confidence 99999999999888643 356789999999999999999999999 58999999999999999999999999999
Q ss_pred EEEEEEEeeCCCCeEEEeeccccc
Q 000176 812 VRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 812 V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
|+|+|+++|.+++|+.||+|....
T Consensus 246 VkvkVl~iD~e~~rI~LS~K~l~~ 269 (318)
T PRK07400 246 MKVMIIDLDAERGRISLSTKQLEP 269 (318)
T ss_pred EEEEEEEEeCCCCEEEEEEecccc
Confidence 999999999999999999999865
No 21
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=7.8e-23 Score=236.24 Aligned_cols=257 Identities=27% Similarity=0.444 Sum_probs=219.2
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHH---------------------
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL--------------------- 1714 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl--------------------- 1714 (1924)
+...++..|+|.+..+|+ ...|++|+.|.+..|.+.-||.+|+||+..+...++.|.+
T Consensus 189 eieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iy 267 (677)
T KOG1915|consen 189 EIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIY 267 (677)
T ss_pred HHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999988887 6789999999999999999999999988755543222211
Q ss_pred -------------------------------------------------------HHHHHHHHHHHHcCCCCHHHHHHHH
Q 000176 1715 -------------------------------------------------------NIWVAYFNLENEYGNPPEEAVVKVF 1739 (1924)
Q Consensus 1715 -------------------------------------------------------~lWiayl~le~~~g~~~~e~a~~vf 1739 (1924)
.-|..|+.|+...| +.+..+++|
T Consensus 268 kyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g--~~~~Ire~y 345 (677)
T KOG1915|consen 268 KYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG--DKDRIRETY 345 (677)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC--CHHHHHHHH
Confidence 66888888888888 569999999
Q ss_pred HHHHhcCCCH---H-------HHHHHHHHH-HHhCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHhc-CHHHHHH
Q 000176 1740 QRALQYCDPK---K-------VHLALLGLY-ERTEQNKLADELLYKMIKKFKH----SCKVWLRRVQRLLKQ-QQEGVQA 1803 (1924)
Q Consensus 1740 erAl~~~~~~---~-------i~~~l~~i~-~~~gk~e~A~~~fe~~lk~~~~----~~~vw~~~a~~l~~~-~~~~A~~ 1803 (1924)
+||+...|+. . +|+.|+-+. ....+.+.++++|+++++..|+ ..++|+.||+|.+++ +...||.
T Consensus 346 ErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARk 425 (677)
T KOG1915|consen 346 ERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARK 425 (677)
T ss_pred HHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHH
Confidence 9999998873 3 444444433 3568899999999999997764 489999999999999 9999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000176 1804 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1883 (1924)
Q Consensus 1804 l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~ 1883 (1924)
++..||-.+|.. +++..|..++.+.+++||.|.+|++-|...|.+...|..|+.++...|+.++||.+|+-|+++..
T Consensus 426 iLG~AIG~cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 426 ILGNAIGKCPKD---KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHhccCCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 999999999987 79999999999999999999999999999999999999999999999999999999999998422
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1884 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1884 ~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
- +-...+|+.|++||...|..+.++.+|+|-|+.-
T Consensus 503 l-dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 503 L-DMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred c-ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 1 2233689999999999999999999999988754
No 22
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.4e-22 Score=234.16 Aligned_cols=256 Identities=23% Similarity=0.385 Sum_probs=218.6
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a 1735 (1924)
+...|++.|||+|..+..+..+|++|+.+.+....+..||.+++||+.+.|- - -.+|..|+.+|..+|| ..-|
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-V----dqlWyKY~ymEE~LgN--i~ga 160 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-V----DQLWYKYIYMEEMLGN--IAGA 160 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-H----HHHHHHHHHHHHHhcc--cHHH
Confidence 3667899999999999999999999999999999999999999999988773 2 2589999999999995 4889
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1736 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1736 ~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
+++|+|-+...|+.+.|..++++..+....+.|+.+|++.+-.. ...+.|+.|+.|..+. +..-|+.+|++|+..+.+
T Consensus 161 RqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 161 RQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999888655 5678899999988888 888888888888888765
Q ss_pred CC-hHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------------------------HHhCC
Q 000176 1815 HK-HIKFISQTAILEFKNGVADRGRSMFEGI--------------------------------------------LSEYP 1849 (1924)
Q Consensus 1815 ~~-~~~~~~~~A~le~~~g~~e~Ar~lfe~a--------------------------------------------L~~~P 1849 (1924)
.. .-.++..||.|+..+..+||||.+|.-+ ++.+|
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 42 2357888888888888888888888777 56667
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-------H-HHHcCCHHHHHHHHHHHHHHHH
Q 000176 1850 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE-------Y-EKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1850 k~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~-------~-E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
-+.|.|..|++++...|+.+++|.+|||||. +.||-.-+..|++|+. | |....|.+..+.||+.|++.+-
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Confidence 7889999999999999999999999999999 7888777777777764 3 5556899999999999998653
No 23
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=1.6e-19 Score=215.84 Aligned_cols=262 Identities=18% Similarity=0.242 Sum_probs=238.2
Q ss_pred HHHHHHHHHhcCC-CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Q 000176 1644 EIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1722 (1924)
Q Consensus 1644 ~~~~~e~~~~~~~-~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~ 1722 (1924)
.|..+.+...... ..-++..|..+|...|..-.+|.+.+.|...-|..+....++++|+..+|..+ .+|+.|..
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae-----~lwlM~ak 592 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE-----ILWLMYAK 592 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch-----hHHHHHHH
Confidence 4655555544433 66788899999999999999999999999999999999999999999999655 49999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHH
Q 000176 1723 LENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1800 (1924)
Q Consensus 1723 le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~ 1800 (1924)
.....| +...|+.++.+|++++|.. ++|++...+...+.++++|+.+|.++... .....+|+.++.|...+ ..++
T Consensus 593 e~w~ag--dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAG--DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcC--CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHH
Confidence 988889 6799999999999999875 99999999999999999999999999875 45789999999999999 9999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1801 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1801 A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
|+.++++||+.+|.. .++|+..||+|.++++.+.||..|-..++..|....+|..++.++.+.|..-+||.+|+|+.-
T Consensus 670 A~rllEe~lk~fp~f--~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDF--HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHhCCch--HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 999999999999987 499999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1881 ~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
-.|++. .||..-+.+|.++|+.+.|+.+..+|++-
T Consensus 748 --kNPk~~-~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 748 --KNPKNA-LLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred --cCCCcc-hhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888 79999999999999999999999999874
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=2e-18 Score=206.70 Aligned_cols=251 Identities=23% Similarity=0.337 Sum_probs=202.3
Q ss_pred hcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCH
Q 000176 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1732 (1924)
Q Consensus 1653 ~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~ 1732 (1924)
..++.|+++....+++..+|||-++|+.-...+....++|+||.++.+|-...+. + .+|+.|++||.-+++ .
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-e-----Rv~mKs~~~er~ld~--~ 667 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-E-----RVWMKSANLERYLDN--V 667 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-c-----hhhHHHhHHHHHhhh--H
Confidence 4567888888888888888888888888888888888888888888888754332 2 478888888888884 4
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
++|..++++|++..|.. ++|+.++++|++.++.+.|++.|...+++.|.+..+|+.++.+..+. +.-+||.+|+|+..
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 88888888888888775 88888888888888888888888888888888888888888887777 88888888888888
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------------
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR-------------------------- 1864 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k-------------------------- 1864 (1924)
.+|+.. .+|+...++|++.|+.+.|+.++-+||+.+|++.-+|..-+.|+-+
T Consensus 748 kNPk~~--~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~ 825 (913)
T KOG0495|consen 748 KNPKNA--LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAK 825 (913)
T ss_pred cCCCcc--hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHH
Confidence 888774 7888888888888888888888888888888888788776666542
Q ss_pred ----cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1865 ----LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1865 ----~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
...+++||..|+||+. ..|+.- +.|--+..||..||+.+....|+.++.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk--~d~d~G-D~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVK--KDPDNG-DAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHc--cCCccc-hHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 1347788999999998 666666 789999999999999999999988875
No 25
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.73 E-value=1.6e-16 Score=190.60 Aligned_cols=255 Identities=19% Similarity=0.328 Sum_probs=210.0
Q ss_pred cCCCCchHHHHHHHHHhC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchh--------------hHHH
Q 000176 1654 EKDAPRTPDEFERLVRSS-PN---SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN--------------EKLN 1715 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~-P~---s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~--------------ekl~ 1715 (1924)
+++...|+..|++++..+ |. -...|.+++..++...+++.|+.+.++|. ..|.+.+- ..+.
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 344888999999998765 32 37899999999999999999999999999 56654221 1348
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQR 1792 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~-~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~--~~~~~vw~~~a~~ 1792 (1924)
+|..|+.+|..+| +.++.+.+|+|.+...= .-.+-..|+.+++.+.-++++.++|++.+..| |...++|..|..-
T Consensus 479 iWs~y~DleEs~g--tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 479 IWSMYADLEESLG--TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 9999999999999 77999999999997643 34888999999999999999999999999877 5778999999988
Q ss_pred HHhc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH-------------------------------
Q 000176 1793 LLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG------------------------------- 1837 (1924)
Q Consensus 1793 l~~~----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~A------------------------------- 1837 (1924)
+.++ +.+.||.+|++||+.+|....-.+++.||+||.+.|-.-+|
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 8776 99999999999999998543336899999999998864444
Q ss_pred -----HHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1838 -----RSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1910 (1924)
Q Consensus 1838 -----r~lfe~aL~~~Pk~--~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~ 1910 (1924)
|.+||+|+...|+. .+.-..|++||.+.|.+++||.+|--+-+ -++|+..-.||..|=+||.+|||.+..+.
T Consensus 637 Gv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq-~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 637 GVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ-ICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred CCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh-cCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 45556667777764 34678899999999999999999988776 46666666899999999999999777665
Q ss_pred HH
Q 000176 1911 VK 1912 (1924)
Q Consensus 1911 v~ 1912 (1924)
.+
T Consensus 716 ML 717 (835)
T KOG2047|consen 716 ML 717 (835)
T ss_pred HH
Confidence 54
No 26
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.69 E-value=4.3e-15 Score=178.65 Aligned_cols=261 Identities=19% Similarity=0.288 Sum_probs=211.8
Q ss_pred cCCCCchHHHHHHHHH-hCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHc
Q 000176 1654 EKDAPRTPDEFERLVR-SSPN-----SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1727 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~-~~P~-----s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~ 1727 (1924)
.++..+....|..++. .+|. -..+|..|+.||...++++.||.+|++|+ ..|+..-.+-.++|++|+.+|+.+
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~-~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT-KVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh-cCCccchHHHHHHHHHHHHHHHhh
Confidence 4456677778888885 4553 46899999999999999999999999999 467764444558999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCC-------------------CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHH
Q 000176 1728 GNPPEEAVVKVFQRALQYCD-------------------PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR 1788 (1924)
Q Consensus 1728 g~~~~e~a~~vferAl~~~~-------------------~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~ 1788 (1924)
.+ .+.|..+.++|+...- +..+|..|+.+.+..|-++....+|++++..--..|.+-.+
T Consensus 439 ~~--~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N 516 (835)
T KOG2047|consen 439 EN--FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN 516 (835)
T ss_pred hh--HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 94 5999999999986531 12899999999999999999999999999877789999999
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcC--CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 000176 1789 RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNG--VADRGRSMFEGILSEYPKR--TDLWSIYLDQE 1862 (1924)
Q Consensus 1789 ~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~-~~g--~~e~Ar~lfe~aL~~~Pk~--~dlw~~y~~le 1862 (1924)
||.||... -++++.++|+|.+..++.....++|..|..-.. ++| .+|+||.+||+||..+|.. ..++..|+++|
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999987766789998877544 555 7999999999999998842 23899999999
Q ss_pred HHcCCHHHHHHHHHH------------------------------------HHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000176 1863 IRLGDVDLIRGLFER------------------------------------AISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1863 ~k~gd~~~ar~lfer------------------------------------al~~~~~pk~~k~lw~~yl~~E~~~G~~~ 1906 (1924)
.+.|-..+|..+|+| ||. .+|.++++.+-.+|.+||.+.|.++
T Consensus 597 Ee~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe-~Lp~~~~r~mclrFAdlEtklGEid 675 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE-SLPDSKAREMCLRFADLETKLGEID 675 (835)
T ss_pred HHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH-hCChHHHHHHHHHHHHHhhhhhhHH
Confidence 987765555555544 444 4666667777777777888888888
Q ss_pred HHHHHHHHHHHH
Q 000176 1907 RIEYVKQKAMEY 1918 (1924)
Q Consensus 1907 ~~~~v~~rAle~ 1918 (1924)
+|+.+|.-+-++
T Consensus 676 RARaIya~~sq~ 687 (835)
T KOG2047|consen 676 RARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHhhhhc
Confidence 888877766554
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.64 E-value=7.4e-14 Score=186.55 Aligned_cols=252 Identities=12% Similarity=0.041 Sum_probs=204.2
Q ss_pred CCchHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1657 APRTPDEFERLVRS---SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1657 ~p~a~~~ferll~~---~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
..++...|++++.. .|+...+|..++.++...|++++|...|++++...|.. ...|+.+..+....+ +.+
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~-----~~~~~~la~~~~~~g--~~~ 382 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV-----TQSYIKRASMNLELG--DPD 382 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCC--CHH
Confidence 55677788888865 47788888888889999999999999999999766632 346777777777888 458
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
+|...|++|++..|.. .+|..++.+|...|++++|...|++++...|++...|+.++..+.+. ++++|...|+++++.
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8999999999888764 88999999999999999999999999998888888999999988888 999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW-------SIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw-------~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
+|.. ..+|..+|.++...|++++|+..|++++...|+....| ...+.++...|++++|..+|++++. +.
T Consensus 463 ~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~ 538 (615)
T TIGR00990 463 FPEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--ID 538 (615)
T ss_pred CCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cC
Confidence 8876 47888899999999999999999999998888643322 2222233346889999999999988 56
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
|... ..|..+.......|+.++|...|++|++..+
T Consensus 539 p~~~-~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 539 PECD-IAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 6665 4677778888888999999999999887654
No 28
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.63 E-value=1.3e-13 Score=184.11 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
+.|...|++|+...|.. ..|+.++.++...|++++|...|++++...|.++.+|+.++.+++.. ++++|...|++++.
T Consensus 348 ~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 348 LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444455554444432 44555555555555555555555555555555555555555555544 55555555555555
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..|.. ...|..+|.++++.|++++|...|++++..+|+..++|..++.++...|++++|+..|++++.
T Consensus 428 l~P~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 428 LDPDF--IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred cCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 55443 244455555555555555555555555555555555555555555555555555555555554
No 29
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.63 E-value=1.6e-14 Score=172.34 Aligned_cols=246 Identities=18% Similarity=0.096 Sum_probs=156.7
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH---HHHcCCCCHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL---ENEYGNPPEE 1733 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~l---e~~~g~~~~e 1733 (1924)
.-.++..|++++..+|+..++++++...+...+.+|+|...|+||+..-|.. -.+|.|+ +...| ..+
T Consensus 234 i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~--------A~a~gNla~iYyeqG--~ld 303 (966)
T KOG4626|consen 234 IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH--------AVAHGNLACIYYEQG--LLD 303 (966)
T ss_pred HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc--------hhhccceEEEEeccc--cHH
Confidence 3345556666666666666666666666666666666666666666544422 2233333 22334 456
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
-|...|+||+...|.. ..|..|++.+...|+..+|.+.|.+++...+..++...+++..+..+ .++.|..+|..|+..
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 6666666666666654 66666666666666666666666666666666666666666666666 666666666666666
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1891 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~l 1891 (1924)
+|... .....+|.++.++|+++.|..-|..+|+..|...|.++.+...+-..|+...|...|+|||. ..|.-+ ..
T Consensus 384 ~p~~a--aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~A-eA 458 (966)
T KOG4626|consen 384 FPEFA--AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFA-EA 458 (966)
T ss_pred Chhhh--hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHH-HH
Confidence 66552 56666666666666677777777777666666666666666666666666667777777766 555555 45
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1892 FKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1892 w~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
+.......+..|++.+|..-|+.|+.
T Consensus 459 hsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 66666666666666666666666654
No 30
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.62 E-value=1.5e-13 Score=183.18 Aligned_cols=251 Identities=10% Similarity=0.014 Sum_probs=193.5
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
++.++|...|++++..+|++..+|..++..+.+.|++++|...+++++...|...+ .|...+. ....| +.++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-----a~~~~~~-l~~~g--~~~e 195 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-----MIATCLS-FLNKS--RLPE 195 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-----HHHHHHH-HHHcC--CHHH
Confidence 33556666666666666666666666666666666666666666666655543221 2222222 34456 4477
Q ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHH----HHHHHHH
Q 000176 1735 VVKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG----VQAVVQR 1807 (1924)
Q Consensus 1735 a~~vferAl~~~~~--~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~----A~~l~~r 1807 (1924)
|...|+++++..+. ...+..++..+.+.|++++|...|++++...++++.+|..++..+... ++++ |...|++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 77777777776542 244455567788899999999999999999999999999999999998 7775 8999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
++...|.+ ..++..+|.++...|++++|...|++++...|++..+|..++..+.+.|+++.|...|++++. ..|..
T Consensus 276 Al~l~P~~--~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~ 351 (656)
T PRK15174 276 ALQFNSDN--VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVT 351 (656)
T ss_pred HHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccc
Confidence 99999976 589999999999999999999999999999999999999999999999999999999999998 56665
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1888 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1888 ~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
. .++..........|+.++|...|++|++.
T Consensus 352 ~-~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 S-KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred h-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5 33433455567789999999999998765
No 31
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.62 E-value=1.8e-14 Score=171.90 Aligned_cols=252 Identities=12% Similarity=0.104 Sum_probs=188.2
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
++..++...|-+++..+|.-..+|.+++-.+..+|++-.|...|++|++..|.-. ..++.+.+.+...+ ..++
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~-----dAYiNLGnV~ke~~--~~d~ 270 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL-----DAYINLGNVYKEAR--IFDR 270 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch-----HHHhhHHHHHHHHh--cchH
Confidence 3456666677777777777777777777777777777777777777776555211 22333333333334 3477
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1735 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1735 a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
|...|+||+...|.. .+|-.++.+|...|..+-|...|++++..-|..+.+|.+++..+... +..+|.+.|.+||..+
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 777777777777765 66777777788888888888888888888888888888888888888 8888888888888888
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw 1892 (1924)
|.+ .+....+|..+.++|.+|.|..+|+.+|..+|......+.++-++-++|+.+.|...|..||. +.|.-+ +.+
T Consensus 351 p~h--adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA-da~ 425 (966)
T KOG4626|consen 351 PNH--ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA-DAL 425 (966)
T ss_pred Ccc--HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH-HHH
Confidence 776 478888888888888888888888888888888888888888888888888888888888888 777555 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1893 KKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1893 ~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
...-.-....|+...|...|.||++.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 55555567778888888888888764
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.61 E-value=3.3e-13 Score=170.59 Aligned_cols=257 Identities=14% Similarity=0.148 Sum_probs=217.5
Q ss_pred hcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCH
Q 000176 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1732 (1924)
Q Consensus 1653 ~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~ 1732 (1924)
..++..++...|++++..+|++..+|..++.++...|++++|..++++++.. +..........|..++..+...| +.
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g--~~ 123 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAG--LL 123 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCC--CH
Confidence 3456788999999999999999999999999999999999999999999964 32222233457888888888889 55
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhc-CHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQ-QQEGVQAVV 1805 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~-----~~vw~~~a~~l~~~-~~~~A~~l~ 1805 (1924)
+.|...|+++++..+.. ..|..++.+|.+.|++++|.+.|+++++..+.. ...|..++..+... ++++|..+|
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999877654 789999999999999999999999999876543 23566788888888 999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1806 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1806 ~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~-~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
+++++..|.. ...+..+|.++.+.|++++|..+|++++...|.. ..+|..++..+.+.|+++.|...|++++. ..
T Consensus 204 ~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~ 279 (389)
T PRK11788 204 KKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--EY 279 (389)
T ss_pred HHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 9999988775 5788999999999999999999999999988876 35788888999999999999999999998 55
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
|+.. .+..++.+..+.|+.+.|..+++++++.
T Consensus 280 p~~~--~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 280 PGAD--LLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred CCch--HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5544 3467778888899999999999988764
No 33
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.61 E-value=3.3e-13 Score=179.93 Aligned_cols=251 Identities=11% Similarity=0.074 Sum_probs=204.5
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..++...|++++..+|+++.+|..++..+.+.|++++|...|+++++..|.. ...|..+.+++...| +.+
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~-----~~a~~~la~~l~~~g--~~~ 161 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN-----SQIFALHLRTLVLMD--KEL 161 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHCC--ChH
Confidence 3456778888888888888888888888888888888888888888888765542 247777788878888 448
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~-~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
.|...|++++...|.. ..|..+ ..+.+.|++++|...|++++..++ .....+...+..+... ++++|...|++++.
T Consensus 162 eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 162 QAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888888887777654 444443 346778888888888888887764 3334445556677777 99999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADR----GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~----Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk 1886 (1924)
..|.. ..++..+|.+++..|+++. |...|++++...|++..+|..++.++.+.|+++.|...|++++. +.|.
T Consensus 241 ~~p~~--~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~ 316 (656)
T PRK15174 241 RGLDG--AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPD 316 (656)
T ss_pred cCCCC--HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCC
Confidence 88876 5899999999999999885 89999999999999999999999999999999999999999998 7777
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1887 ~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
.. .+|..+.......|+++.+...|+++++
T Consensus 317 ~~-~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 317 LP-YVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77 5788888888889999999999998875
No 34
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.59 E-value=7.2e-15 Score=175.30 Aligned_cols=135 Identities=33% Similarity=0.551 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~-~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
-+|+.|+.|..+. ..+.||.+|++|++..+. +..+|..+|.+|+. .++.+.|+.+||++++.+|.+.++|..|+++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3799999999999 999999999999954332 35899999999998 5678889999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1862 EIRLGDVDLIRGLFERAISLSLPPKK-MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1862 e~k~gd~~~ar~lferal~~~~~pk~-~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
+++.++.+.||.+|||+++ .++++. ++.+|.+|++||.++|+.+.+..|++|+.+++..
T Consensus 80 l~~~~d~~~aR~lfer~i~-~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS-SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC-TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998 577777 8899999999999999999999999999998754
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=9e-15 Score=175.99 Aligned_cols=255 Identities=19% Similarity=0.274 Sum_probs=121.2
Q ss_pred hcCCCCchHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC
Q 000176 1653 LEKDAPRTPDEFERLVRS--SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1730 (1924)
Q Consensus 1653 ~~~~~p~a~~~ferll~~--~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~ 1730 (1924)
..++.++|.+.+.+.+.. .|++...|..++......++.+.|+..|++++..-+.+. .....++.+ ...++
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~-----~~~~~l~~l-~~~~~- 92 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP-----QDYERLIQL-LQDGD- 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccc-ccccc-
Confidence 345678888888776654 489999999999999999999999999999997654322 356667777 56674
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~--~~~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
.++|.++++++.+..+....|..++.++.+.++++++.++++++.... +.++.+|..++.++.+. +.++|...|++
T Consensus 93 -~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 -PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred -ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 488999999999877777888999999999999999999999977543 67899999999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
|++..|.+ ..++..++.++...|+.++++.+++......|.+..+|..|+..+...|++++|..+|++++. ..|++
T Consensus 172 al~~~P~~--~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d 247 (280)
T PF13429_consen 172 ALELDPDD--PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDD 247 (280)
T ss_dssp HHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-
T ss_pred HHHcCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--ccccc
Confidence 99999987 488999999999999999999999999999999999999999999999999999999999998 77777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1888 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1888 ~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
. .++..|.+.....|..+.|..++.+|++.++
T Consensus 248 ~-~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 248 P-LWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp H-HHHHHHHHHHT--------------------
T ss_pred c-ccccccccccccccccccccccccccccccC
Confidence 7 6888999999999999999999999998765
No 36
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=99.57 E-value=5.9e-16 Score=180.32 Aligned_cols=148 Identities=17% Similarity=0.256 Sum_probs=128.5
Q ss_pred ccCC-CCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1363 EDLS-PNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1363 ~~lk-~G~~v~G~V~~v~~~G~fV~l~--~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
..++ +|++|.|.|++|.++|+||.|. ++++|+||+|+|||.++.++.+.+++||.|.|+|++||+++++|.||+|..
T Consensus 12 ~~~P~~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~v 91 (319)
T PTZ00248 12 QKFPEEDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKRV 91 (319)
T ss_pred hhCCCCCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeeec
Confidence 3566 8999999999999999999996 589999999999999999999999999999999999999999999999999
Q ss_pred cccccchhccccccccCCCcEEEEEEEEeec-ceEEEE------EecCceeEEeeccccCcccccCcccccC---CCcEE
Q 000176 1440 DSRTASQSEINNLSNLHVGDIVIGQIKRVES-YGLFIT------IENTNLVGLCHVSELSEDHVDNIETIYR---AGEKV 1509 (1924)
Q Consensus 1440 ~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~-~GvFV~------l~~~~v~gl~h~sels~~~~~~~~~~~~---~Gd~V 1509 (1924)
..+||... ...++.|+++.|.|+++.+ ||+|++ .-+ ...++.|.++.+...+.++.+.|. +++.+
T Consensus 92 ~~~pw~~~----~e~~~~g~~v~~~V~~ia~~~g~~~eely~~i~~p-l~~~~gh~y~af~~~v~~~~evl~~l~i~~ev 166 (319)
T PTZ00248 92 SPEDIEAC----EEKFSKSKKVHSIMRHIAQKHGMSVEELYTKIIWP-LYKKYGHALDALKEALTNPDNVFEGLDIPEEV 166 (319)
T ss_pred ccchHHHH----HHhCcCCCEEEEEEEEchhhcCCCHHHHHHHHHHH-HHHhcCCHHHHHHHHhcCchhhhccCCCCHHH
Confidence 98887653 6789999999999999954 999997 334 788999999998887777665666 66655
Q ss_pred EEEEEE
Q 000176 1510 KVKILK 1515 (1924)
Q Consensus 1510 k~~Vl~ 1515 (1924)
+..++.
T Consensus 167 ~~~l~~ 172 (319)
T PTZ00248 167 KESLLQ 172 (319)
T ss_pred HHHHHH
Confidence 554443
No 37
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=99.55 E-value=5.9e-13 Score=147.10 Aligned_cols=231 Identities=17% Similarity=0.158 Sum_probs=181.2
Q ss_pred cCCCcEEEEEEEEEEcceEEEEEcCC-eEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEeeCCCCc
Q 000176 583 ATDRLITHGWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661 (1924)
Q Consensus 583 ~~~G~~~~G~V~~i~~~G~~V~f~~~-v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~~~~~ 661 (1924)
..+|++..+.|....++|+|++=.++ -.-++|+++... +...+|++|++.|.- |. ++|+.++++
T Consensus 3 ~~iG~~~~l~V~~~~~~g~fL~~~~~~~~ilL~k~~~~~-------~e~evGdev~vFiY~-D~-~~rl~aTt~------ 67 (287)
T COG2996 3 IKIGQINSLEVVEFSDFGYFLDAGEDGTTILLPKSEPEE-------DELEVGDEVTVFIYV-DS-EDRLIATTR------ 67 (287)
T ss_pred ccccceEEEEEEEeeceeEEEecCCCceEEeccccCCcC-------CccccCcEEEEEEEE-CC-CCceeheee------
Confidence 45899999999999999999976433 267888887642 247899999999884 64 577788874
Q ss_pred ccccccCCCCEEEEEEEEEc-cCcEEEEEEecCceeEEEeCCcCCCCccchhhhccccCCCCeEeeEEEeecCCCeEEEE
Q 000176 662 SEDDLVKLGSLVSGVVDVVT-PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740 (1924)
Q Consensus 662 ~~~~~~~~G~iv~g~V~~~~-~~g~~V~l~~~~~~~g~i~~~~Lsd~~~~~~~~~~~~~~G~~i~~vl~id~~~~~i~ls 740 (1924)
.+.+++|+.-.++|+++. ..|+||.. +=.-+-+||..+|+-... -|+++||++-.-|.+|+.+ |+ +
T Consensus 68 --~p~~tvg~~g~~~Vv~v~~~lGaFlD~--Gl~KDl~vp~~elp~~~~------~wpq~Gd~l~v~l~~Dkk~-Ri--~ 134 (287)
T COG2996 68 --EPKATVGEYGWLKVVEVNKDLGAFLDW--GLPKDLLVPLDELPTLKS------LWPQKGDKLLVYLYVDKKG-RI--W 134 (287)
T ss_pred --cceEeecceeEEEEEEEcCCcceEEec--CCCcceeeehhhcccccc------cCCCCCCEEEEEEEEccCC-cE--E
Confidence 356789999999999998 67999988 335788999999975322 2789999999888888877 33 3
Q ss_pred ecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEee
Q 000176 741 AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820 (1924)
Q Consensus 741 ~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id 820 (1924)
.+...-+..++++....+--.|+.++|+|.++...|.||-..++.-||+|+|+.-.. .+.||.+++||+.+.
T Consensus 135 g~~a~~~~l~~l~~~~~~~l~nq~v~~tVYr~~~~G~fv~~e~~~~GfIh~sEr~~~--------prlG~~l~~rVi~~r 206 (287)
T COG2996 135 GTLAIEKILENLATPAYNNLKNQEVDATVYRLLESGTFVITENGYLGFIHKSERFAE--------PRLGERLTARVIGVR 206 (287)
T ss_pred EEecchhHHHhcCCccchhhhcCeeeeEEEEEeccceEEEEcCCeEEEEcchhhccc--------ccCCceEEEEEEEEc
Confidence 333333444444443322223999999999999999999999999999999987543 489999999999998
Q ss_pred CCCCeEEEeecccccCC--CchhhHHHHHHHH
Q 000176 821 SETGRITLSLKQSCCSS--TDASFMQEHFLLE 850 (1924)
Q Consensus 821 ~~~~r~~lSlk~~~~~~--~d~~~~~~~~~~~ 850 (1924)
+ ++++.||+++..... .|+++|..||...
T Consensus 207 e-Dg~lnLSl~p~~~E~l~~daq~Il~yL~~~ 237 (287)
T COG2996 207 E-DGKLNLSLRPRAHEMLDEDAQMILTYLESN 237 (287)
T ss_pred c-CCeeecccccccHHhhhhhHHHHHHHHHHc
Confidence 7 999999999986432 7788888888854
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.55 E-value=1.1e-12 Score=183.61 Aligned_cols=248 Identities=13% Similarity=0.088 Sum_probs=196.7
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a 1735 (1924)
+.+++...|++++..+|++...|..++..+...+++++|..+++++....|.. ...|..+..+....| +.+.|
T Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g--~~~~A 722 (899)
T TIGR02917 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA-----ALGFELEGDLYLRQK--DYPAA 722 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-----hHHHHHHHHHHHHCC--CHHHH
Confidence 35566666666666666666666666666666666666666666666554432 235666666666777 44888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1736 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1736 ~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
.+.|+++++..|....+..++.++...|++++|.+.++++++..|.+..+++.++..+... ++++|..+|+++++..|.
T Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 8888888888887788888888888889999999999998888888888888888888888 999999999999988886
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~ 1894 (1924)
+ ..++..++.++...|+ ++|+.+|++++...|++..+|..++.++...|+++.|..+|++++. ..|.+. .++..
T Consensus 803 ~--~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~~~-~~~~~ 876 (899)
T TIGR02917 803 N--AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN--IAPEAA-AIRYH 876 (899)
T ss_pred C--HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCh-HHHHH
Confidence 5 5788888888888888 7799999999998898888898899999999999999999999998 555555 57888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 000176 1895 YLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1895 yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
+.....+.|+.++|+.++++++
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 8888888899999988888876
No 39
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=4.5e-15 Score=144.13 Aligned_cols=75 Identities=33% Similarity=0.685 Sum_probs=71.8
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.+++|+++.|+|++|++||+||+|++ +-+||+||||+++.+++|+.+.+++||.|+|+|++||. +++|+||||..
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~-g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide-~GKisLSIr~~ 76 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEG-GKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE-NGKISLSIRKL 76 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecC-CCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeecc-CCCcceehHHh
Confidence 57899999999999999999999987 78999999999999999999999999999999999995 99999999984
No 40
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.54 E-value=1.7e-12 Score=181.67 Aligned_cols=251 Identities=15% Similarity=0.068 Sum_probs=166.8
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
++..++...|++++..+|++...|..++..+...|++++|...|++++...|.. ...|..+..+....+ +.++
T Consensus 479 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~ 551 (899)
T TIGR02917 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN-----LRAILALAGLYLRTG--NEEE 551 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHcC--CHHH
Confidence 345566677777777777777777777777777777777777777777655532 235666666666666 3477
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1735 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1735 a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
|...|+++++..|.. ..|..++.+|...|++++|.++|++++..++.++.+|..++..+... ++++|...|+++++..
T Consensus 552 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777777777666553 66667777777777777777777777766666777777777777766 7777777777777666
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw 1892 (1924)
|.+ ...|..+|.++...|++++|...|++++...|++...|..++.++...|+++.|..+|+++.. ..|... ..|
T Consensus 632 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~ 706 (899)
T TIGR02917 632 PDS--ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK--QHPKAA-LGF 706 (899)
T ss_pred CCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCh-HHH
Confidence 654 356667777777777777777777777777777666777666666666666666666666665 333333 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1893 KKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1893 ~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..........|+.+.|...|.++++
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4455555556666666666666554
No 41
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.53 E-value=2.7e-12 Score=182.55 Aligned_cols=258 Identities=10% Similarity=0.076 Sum_probs=195.0
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhH--------------------
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-------------------- 1713 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ek-------------------- 1713 (1924)
.++.++|...|++++..+|++..+|..++..+...|++++|++.|+++++..|.....-.
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999999987665321100
Q ss_pred -----------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHH
Q 000176 1714 -----------------LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKM 1775 (1924)
Q Consensus 1714 -----------------l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~ 1775 (1924)
...|..........+ +.++|.+.|++|++..|.. .+|+.++.+|.+.|++++|...|+++
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g--~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQG--KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 001112223334456 4599999999999999875 88999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHH----------------------------------------HHhCCC
Q 000176 1776 IKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA----------------------------------------LLSLPR 1814 (1924)
Q Consensus 1776 lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ra----------------------------------------l~~~p~ 1814 (1924)
+...|.++..|+.++.++... +.++|...|+++ +...|.
T Consensus 522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~ 601 (1157)
T PRK11447 522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP 601 (1157)
T ss_pred HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 998888888888777766655 666666555432 112333
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~ 1894 (1924)
+ ..++..+|.++.+.|++++|+..|+++++..|++.++|..++.++...|++++|+..|++++. ..|... .++..
T Consensus 602 ~--~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~-~~~~~ 676 (1157)
T PRK11447 602 S--TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSL-NTQRR 676 (1157)
T ss_pred C--chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCCh-HHHHH
Confidence 3 356677778888888888888888888888888888888888888888888888888887776 555555 45555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1895 YLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1895 yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
+.......|+.++|..+++++++.
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhh
Confidence 566666677777777777777654
No 42
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.53 E-value=3.1e-12 Score=181.99 Aligned_cols=203 Identities=13% Similarity=0.073 Sum_probs=165.3
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHH-------HHHHH--HHHHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-------NIWVA--YFNLE 1724 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl-------~lWia--yl~le 1724 (1924)
.++.+++...|++++..+|++..+|..++..+.+.+++++|+..|+++++..|......+. ..|.. .....
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 4557899999999999999999999999999999999999999999999877743321110 12322 23344
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH-----------
Q 000176 1725 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR----------- 1792 (1924)
Q Consensus 1725 ~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~----------- 1792 (1924)
...+ +.++|...|++|++..|.. ..|..++.+|...|++++|.+.|+++++..|.+..+|..++.+
T Consensus 362 ~~~g--~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 362 LKAN--NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 5667 4599999999999998875 7899999999999999999999999999988888777655443
Q ss_pred -------------------------------HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1793 -------------------------------LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840 (1924)
Q Consensus 1793 -------------------------------l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~l 1840 (1924)
+... ++++|.+.|+++++..|.+ ..++..+|.++++.|++++|...
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~--~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS--VWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 2345 8899999999999999987 47889999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHH
Q 000176 1841 FEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1841 fe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
|++++...|.+.+.+..++.
T Consensus 518 l~~al~~~P~~~~~~~a~al 537 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGL 537 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 99999888877665544433
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.51 E-value=4e-12 Score=172.86 Aligned_cols=248 Identities=13% Similarity=0.010 Sum_probs=204.3
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
+...++...|.+++...|++. .++.++..+.+.|++++|...|++++...|. . ..|..+..+....| +.++
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~-----~a~~~la~all~~G--d~~e 560 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-N-----EDLLAAANTAQAAG--NGAA 560 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-c-----HHHHHHHHHHHHCC--CHHH
Confidence 345568888999999999754 3555566667899999999999998755332 2 24777788888888 5699
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1735 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1735 a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
|...|++|++..|.. ..+..++..+...|++++|...|++++...|. ..+|..++..+.+. ++++|...|++++...
T Consensus 561 A~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 561 RDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999988764 55555555556679999999999999999885 89999999999999 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw 1892 (1924)
|.+ ..++..+|.++...|++++|+..|+++++..|.+.++|..++..+...|+++.|+..|++++. +.|..+ .+-
T Consensus 640 Pd~--~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a-~i~ 714 (987)
T PRK09782 640 PNN--SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQA-LIT 714 (987)
T ss_pred CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCc-hhh
Confidence 987 589999999999999999999999999999999999999999999999999999999999998 777776 466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1893 KKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1893 ~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..|..++....+++++.+-+.|+..
T Consensus 715 ~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 715 PLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666666655543
No 44
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.49 E-value=4.3e-12 Score=151.15 Aligned_cols=237 Identities=19% Similarity=0.279 Sum_probs=196.1
Q ss_pred CHHHHHHHHHHHHHcC------CH--HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC-------C-----CHH
Q 000176 1674 SSFVWIKYMAFMLSMA------DV--EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN-------P-----PEE 1733 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~------e~--dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~-------~-----~~e 1733 (1924)
...+|.+++.++.... .+ .+..=+|+++|...++.++ +|..|..+....+. . -.+
T Consensus 236 qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~pe-----iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 236 QVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPE-----IWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 3578999999987543 22 2334567999988887664 99988777666551 0 158
Q ss_pred HHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCC---hHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhc-CHHHHHHHHH
Q 000176 1734 AVVKVFQRALQYCDP--KKVHLALLGLYERTEQ---NKLADELLYKMIKKFKHSC-KVWLRRVQRLLKQ-QQEGVQAVVQ 1806 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~--~~i~~~l~~i~~~~gk---~e~A~~~fe~~lk~~~~~~-~vw~~~a~~l~~~-~~~~A~~l~~ 1806 (1924)
++..+|+|++..-.. .-+|++|+...+..-+ ++..-++|+++++++...+ -+|..|..|..+. -...||.+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 899999999987654 3788888888776655 8999999999999885444 4699999999999 9999999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 000176 1807 RALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1885 (1924)
Q Consensus 1807 ral~~~p~~~~~~~~~~~A~le~-~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~p 1885 (1924)
+|-+.--... .++..-|.+|+ -.+|.+-|..+|+-.|+.+++....-..|++++...++-..||.+|||++...+++
T Consensus 391 kaR~~~r~~h--hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 391 KAREDKRTRH--HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHhhccCCcc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 9987654442 67888888877 46799999999999999999999999999999999999999999999999966899
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1886 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1886 k~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
++.+.+|.+|++||...||.+.+.++-+|-..
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999999888766543
No 45
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=99.49 E-value=3.3e-12 Score=141.28 Aligned_cols=216 Identities=19% Similarity=0.155 Sum_probs=169.1
Q ss_pred cCCCCEEEEEEEEEecCcCeEEEEeCCce-EEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeec
Q 000176 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHL-YGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRS 1335 (1924)
Q Consensus 1257 i~~G~~v~g~V~~v~~~~~g~~V~l~~~~-~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~ 1335 (1924)
+.+|++..+.|.+.+.+ |+|++=+.+- .-++|.++.. .....+|+.|.+.|+- |. .+++.++++.
T Consensus 3 ~~iG~~~~l~V~~~~~~--g~fL~~~~~~~~ilL~k~~~~-------~~e~evGdev~vFiY~-D~----~~rl~aTt~~ 68 (287)
T COG2996 3 IKIGQINSLEVVEFSDF--GYFLDAGEDGTTILLPKSEPE-------EDELEVGDEVTVFIYV-DS----EDRLIATTRE 68 (287)
T ss_pred ccccceEEEEEEEeece--eEEEecCCCceEEeccccCCc-------CCccccCcEEEEEEEE-CC----CCceeheeec
Confidence 34999999999999999 9999987543 5566666542 2345699999999776 43 3578877766
Q ss_pred cccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEe-eceEEEEeCCCcEEEEECccCCCcccCCCCccCCC
Q 000176 1336 SLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPI 1414 (1924)
Q Consensus 1336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~-~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~ 1414 (1924)
+. ..+|+.-.+.|+.+. +-|+|++.|-.-+.+|++++++....-+| ++
T Consensus 69 p~---------------------------~tvg~~g~~~Vv~v~~~lGaFlD~Gl~KDl~vp~~elp~~~~~wp----q~ 117 (287)
T COG2996 69 PK---------------------------ATVGEYGWLKVVEVNKDLGAFLDWGLPKDLLVPLDELPTLKSLWP----QK 117 (287)
T ss_pred ce---------------------------EeecceeEEEEEEEcCCcceEEecCCCcceeeehhhcccccccCC----CC
Confidence 54 568999999999998 89999999988999999999986433334 48
Q ss_pred CcEEEEEEEEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcc
Q 000176 1415 GKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED 1494 (1924)
Q Consensus 1415 G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~ 1494 (1924)
|+.+-++ +.+|. .+||.-+++.-..-. ........+ -.+|.+.|+|.+....|.||-+++ +.-|++|.||....
T Consensus 118 Gd~l~v~-l~~Dk-k~Ri~g~~a~~~~l~--~l~~~~~~~-l~nq~v~~tVYr~~~~G~fv~~e~-~~~GfIh~sEr~~~ 191 (287)
T COG2996 118 GDKLLVY-LYVDK-KGRIWGTLAIEKILE--NLATPAYNN-LKNQEVDATVYRLLESGTFVITEN-GYLGFIHKSERFAE 191 (287)
T ss_pred CCEEEEE-EEEcc-CCcEEEEecchhHHH--hcCCccchh-hhcCeeeeEEEEEeccceEEEEcC-CeEEEEcchhhccc
Confidence 9999988 56785 559998887644311 110001112 259999999999999999999976 99999999996554
Q ss_pred cccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1495 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1495 ~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
.+.|++++++|+.+.. +++|.||+++.-+
T Consensus 192 --------prlG~~l~~rVi~~re-Dg~lnLSl~p~~~ 220 (287)
T COG2996 192 --------PRLGERLTARVIGVRE-DGKLNLSLRPRAH 220 (287)
T ss_pred --------ccCCceEEEEEEEEcc-CCeeecccccccH
Confidence 5899999999999995 9999999999644
No 46
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.47 E-value=1.7e-11 Score=166.80 Aligned_cols=245 Identities=12% Similarity=0.000 Sum_probs=212.4
Q ss_pred hHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000176 1660 TPDEFERLVRSSPN--SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737 (1924)
Q Consensus 1660 a~~~ferll~~~P~--s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~ 1737 (1924)
+-..+.+++..+|. ++.+|..++.++.. ++.++|...+.+++...|... .++.+.......| +.++|..
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~------~~L~lA~al~~~G--r~eeAi~ 530 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW------QHRAVAYQAYQVE--DYATALA 530 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH------HHHHHHHHHHHCC--CHHHHHH
Confidence 34456666677788 99999999999987 799999999999998887411 1333344445678 5699999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC
Q 000176 1738 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1816 (1924)
Q Consensus 1738 vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~ 1816 (1924)
.|++++...+....|..++.++.+.|++++|...|+++++..+....++..++..+... ++++|...|+++++..|.
T Consensus 531 ~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-- 608 (987)
T PRK09782 531 AWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-- 608 (987)
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--
Confidence 99999887777778999999999999999999999999998888877777776666666 999999999999999994
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1817 ~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
..+|..+|.++.+.|++++|...|++++...|++..+|..++..+...|+++.|+.+|++++. +.|... .+|....
T Consensus 609 -~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~-~a~~nLA 684 (987)
T PRK09782 609 -ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDP-ALIRQLA 684 (987)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999 888888 5788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1897 EYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1897 ~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
......|+.+.|+..+++|++.-
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888999999999999998753
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=2.3e-12 Score=158.50 Aligned_cols=254 Identities=17% Similarity=0.105 Sum_probs=220.7
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchh-------------------------
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN------------------------- 1711 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~------------------------- 1711 (1924)
-.+|...|+++-...+|......+.+..|..++++++|+++|+++-+.-|++-+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567888999556778888777899999999999999999999999888876211
Q ss_pred ----hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHH
Q 000176 1712 ----EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1786 (1924)
Q Consensus 1712 ----ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw 1786 (1924)
.+.+-|.+..|++..+++ -++|.+.|+||+|.+|.. =.|..++.=+.....++.|...|..++...+....+|
T Consensus 415 ~~~~~sPesWca~GNcfSLQkd--h~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKD--HDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhH--HHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 122789999999999994 499999999999999965 5677777777888999999999999999999999999
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000176 1787 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1865 (1924)
Q Consensus 1787 ~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~ 1865 (1924)
+-++..++++ +++.|.-.|++|+..+|.+ ..+...++.++.+.|+.|+|..+|++|+..+|++..-.+..+.+++..
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSN--SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccc--hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 9999999999 9999999999999999988 478889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1866 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1866 gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
+++++|...||.+-. +.|+.. ..+........+.|..+-|..-|--|++
T Consensus 571 ~~~~eal~~LEeLk~--~vP~es-~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 571 GRYVEALQELEELKE--LVPQES-SVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred cchHHHHHHHHHHHH--hCcchH-HHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 999999999999887 888888 6777777778888888777666655543
No 48
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.45 E-value=2.4e-11 Score=153.67 Aligned_cols=252 Identities=12% Similarity=0.066 Sum_probs=207.8
Q ss_pred cCCCCchHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC
Q 000176 1654 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1729 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s----~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~ 1729 (1924)
.++.+++...|++++...+.. ...|..++..+...|++++|..+|+++++..|.. ...|..++.+....+
T Consensus 82 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~g- 155 (389)
T PRK11788 82 RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA-----EGALQQLLEIYQQEK- 155 (389)
T ss_pred cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch-----HHHHHHHHHHHHHhc-
Confidence 345778888898887643322 3678899999999999999999999999764432 347888888888889
Q ss_pred CCHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHH
Q 000176 1730 PPEEAVVKVFQRALQYCDPK------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQ 1802 (1924)
Q Consensus 1730 ~~~e~a~~vferAl~~~~~~------~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~ 1802 (1924)
+.++|.+.|+++++..+.. ..|..++.++.+.+++++|...|+++++..+.....|+.++..+.+. ++++|.
T Consensus 156 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 156 -DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred -hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4599999999999876542 35678888999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 000176 1803 AVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882 (1924)
Q Consensus 1803 ~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~ 1882 (1924)
++|++++...|... ..++..++..+...|++++|...|++++...|+. ..+..++.++.+.|++++|..+|++++.
T Consensus 235 ~~~~~~~~~~p~~~-~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~-- 310 (389)
T PRK11788 235 EALERVEEQDPEYL-SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLLLALAQLLEEQEGPEAAQALLREQLR-- 310 (389)
T ss_pred HHHHHHHHHChhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence 99999998877542 4678889999999999999999999999999986 4558899999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHH
Q 000176 1883 LPPKKMKFLFKKYLEYEKS---VGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1883 ~~pk~~k~lw~~yl~~E~~---~G~~~~~~~v~~rAle~ 1918 (1924)
..|+.. .|..++..... +|...++..++++.++.
T Consensus 311 ~~P~~~--~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 311 RHPSLR--GFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hCcCHH--HHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 566655 34444544332 56778888888877753
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.2e-11 Score=145.85 Aligned_cols=240 Identities=16% Similarity=0.161 Sum_probs=200.5
Q ss_pred HhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000176 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731 (1924)
Q Consensus 1652 ~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~ 1731 (1924)
++.++.-.+..+|+.+|..+|....++|..+..+++..+.++-...|..|....|... .++.....+....+ +
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~-----dvYyHRgQm~flL~--q 409 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP-----DVYYHRGQMRFLLQ--Q 409 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC-----chhHhHHHHHHHHH--H
Confidence 3467788999999999999999888899999999999999999999999998766544 36666666655666 4
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
.+.|..-|++|+...|.. -.|++++-...+.++++++...|+.+.++||..+.+|..+++.|..+ ++++|.+.|..|+
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 499999999999999987 67888998888999999999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCCh----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1810 LSLPRHKH----IKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1810 ~~~p~~~~----~~~~~~~A~le~-~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
..-|.... +..+..-|.+.+ -.+++.+|..++++++..+|+....+..+++++.++|++++|.++||.++. +.
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~--lA 567 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ--LA 567 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HH
Confidence 99887211 122333333333 348999999999999999999999999999999999999999999999997 55
Q ss_pred chhHHHHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~ 1901 (1924)
...+ .....|---|.-
T Consensus 568 rt~~-E~~~a~s~aeAA 583 (606)
T KOG0547|consen 568 RTES-EMVHAYSLAEAA 583 (606)
T ss_pred HhHH-HHHHHHHHHHHH
Confidence 4433 455555544443
No 50
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=2.4e-11 Score=132.44 Aligned_cols=193 Identities=17% Similarity=0.111 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
+..+.+.--+++.| +...|+.-+++|++..|.. ..|..++.+|.+.|..+.|.+.|+++++..|.+.++..+|+.||
T Consensus 36 ~arlqLal~YL~~g--d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQG--DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 44445444456678 5699999999999999986 99999999999999999999999999999999999999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar 1872 (1924)
-.+ ++++|...|++|+..---..+...|.+.+..-++.|+.+.|+.+|+++|..+|++......+++++++.|++-.||
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999 9999999999999753333456899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1873 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1873 ~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~ 1912 (1924)
..|++... ... -.+..+|..| .+++..||...+.+.-
T Consensus 194 ~~~~~~~~-~~~-~~A~sL~L~i-riak~~gd~~~a~~Y~ 230 (250)
T COG3063 194 LYLERYQQ-RGG-AQAESLLLGI-RIAKRLGDRAAAQRYQ 230 (250)
T ss_pred HHHHHHHh-ccc-ccHHHHHHHH-HHHHHhccHHHHHHHH
Confidence 99999888 333 4455677765 7899999988766543
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.42 E-value=1.1e-12 Score=158.01 Aligned_cols=215 Identities=16% Similarity=0.152 Sum_probs=120.2
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
++.+++...|++++..+|.++..+.+++.+ ...+++++|..+++++.+..+. ...|..++.+....+ +.+.
T Consensus 58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~------~~~l~~~l~~~~~~~--~~~~ 128 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD------PRYLLSALQLYYRLG--DYDE 128 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT---HHH
T ss_pred cccccccccccccccccccccccccccccc-cccccccccccccccccccccc------cchhhHHHHHHHHHh--HHHH
Confidence 457788999999999999999999999998 7999999999999998865442 246888888888888 5699
Q ss_pred HHHHHHHHHhcC--C-CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1735 VVKVFQRALQYC--D-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1735 a~~vferAl~~~--~-~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
+..+++++.+.. + +..+|..++.++.+.|+.++|...|+++++..|++..++..++.++... +.+++++++.+..+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999988655 2 2489999999999999999999999999999999999999999999988 99999999999998
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..|.+. .+|..+|..++..|++++|..+|+++++..|++..++..|++.+...|+.++|..++.+++.
T Consensus 209 ~~~~~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 209 AAPDDP--DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp H-HTSC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HCcCHH--HHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 887664 78999999999999999999999999999999999999999999999999999999999876
No 52
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.41 E-value=5.2e-11 Score=146.07 Aligned_cols=250 Identities=17% Similarity=0.264 Sum_probs=195.4
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000176 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1739 (1924)
Q Consensus 1660 a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vf 1739 (1924)
.+..|...|...|.+...|.+||.++.+.|..+.+.++|+|++..+|.+ +.+|+.|+++...... +++..+..|
T Consensus 64 ~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-----vdlW~~Y~~f~~n~~~-d~~~lr~~f 137 (577)
T KOG1258|consen 64 LREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-----VDLWLSYLAFLKNNNG-DPETLRDLF 137 (577)
T ss_pred HHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHhccCC-CHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999974 4699999999775432 678899999
Q ss_pred HHHHhcCCCH----HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhc------CH----------
Q 000176 1740 QRALQYCDPK----KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK-VWLRRVQRLLKQ------QQ---------- 1798 (1924)
Q Consensus 1740 erAl~~~~~~----~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~-vw~~~a~~l~~~------~~---------- 1798 (1924)
+||..++... .+|-.|+.+.....+......+|++.+........ .+.+|-+++-+. ..
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 9999998753 99999999998888999999999998876432222 222333333221 11
Q ss_pred ------------------------------HHHHHHHHH------------------------HHHhC-----CC-CChH
Q 000176 1799 ------------------------------EGVQAVVQR------------------------ALLSL-----PR-HKHI 1818 (1924)
Q Consensus 1799 ------------------------------~~A~~l~~r------------------------al~~~-----p~-~~~~ 1818 (1924)
+.+...+.+ .++.- |- ....
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 111111111 11110 00 1225
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
..|..|+.++...|++++..-+|++++-.+.....+|..|+.+....|+.+-|..++.++.. ..-++...+-..|..|
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~--i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK--IHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh--hcCCCCcHHHHHHHHH
Confidence 78999999999999999999999999988888888999999999999999999999999988 3333333789999999
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 000176 1899 EKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1899 E~~~G~~~~~~~v~~rAle 1917 (1924)
|+..|++..|+.++++..+
T Consensus 376 ~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHhhccHHHHHHHHHHHHh
Confidence 9999999999999988754
No 53
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.41 E-value=4.6e-13 Score=132.59 Aligned_cols=90 Identities=40% Similarity=0.590 Sum_probs=74.8
Q ss_pred cCcccEEEEEEEEEecccEEEEcCCCcEEEEeccccCchhhcc---c-------cccccCCCCCCcccCCCEEEEEEEEe
Q 000176 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDN---E-------IEANEDNLLPTIFHVGQLVSCIVLQL 200 (1924)
Q Consensus 131 l~~G~~~lg~V~~i~~~~l~vslp~~l~g~v~~~~is~~~~~~---~-------~~~~~~~~l~~~f~~Gq~v~~~V~~~ 200 (1924)
|++||.|+|+|.+|++.++.|+||+++.|||++++||+.|... . ..+.+...+.++|++||.|+|+|+++
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~~ 80 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSL 80 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEECCCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEEc
Confidence 6799999999999999999999999999999999999976211 0 01122346889999999999999999
Q ss_pred ecCccccceeEEEEEechhhhc
Q 000176 201 DDDKKEIGKRKIWLSLRLSLLY 222 (1924)
Q Consensus 201 ~~~~~~~~~~~i~LSl~p~~vn 222 (1924)
++.++ ++++|.|||+|++||
T Consensus 81 d~~~~--~~~~i~LSlr~~~vn 100 (100)
T cd05693 81 DKSKS--GKKRIELSLEPELVN 100 (100)
T ss_pred cCCcC--CCcEEEEEecHHHCC
Confidence 87532 157999999999998
No 54
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.40 E-value=6.5e-13 Score=124.24 Aligned_cols=71 Identities=21% Similarity=0.445 Sum_probs=66.3
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccC---cccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN---IETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~---~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
+++|++|.|+|+++++||+||.|++ ++.|++|++|++|.++.+ +.+.|++||.|+|+|+++|++++||.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~-~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSS-SIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCC-CCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 5799999999999999999999986 899999999999998766 4589999999999999999999999886
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=3.9e-11 Score=157.66 Aligned_cols=244 Identities=10% Similarity=-0.063 Sum_probs=195.2
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHc
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSM---------ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1727 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~---------~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~ 1727 (1924)
..+|...|++++..+|++..+|..++.++... +++++|...+++|++..|... ..|..+..+....
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~-----~a~~~lg~~~~~~ 351 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP-----QALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHc
Confidence 45788899999999999999998888776532 358999999999998777533 4788888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHH
Q 000176 1728 GNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVV 1805 (1924)
Q Consensus 1728 g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~ 1805 (1924)
+ +.++|...|++|++.+|.. ..|+.++.+|...|++++|...|++++...|..+..++.++..++.. ++++|...+
T Consensus 352 g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 S--EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred c--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 8 4599999999999999985 89999999999999999999999999999998877766666556667 999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C
Q 000176 1806 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL-P 1884 (1924)
Q Consensus 1806 ~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~-~ 1884 (1924)
++++...|... +..+..+|.++...|++++|+..|++++...|.....|...+..+...|+ +|+..+++++.... .
T Consensus 430 ~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQHLQDN-PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhccccC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh
Confidence 99998864332 57888999999999999999999999999999888888888888888774 78887877665211 1
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rA 1915 (1924)
+.. ..| +..++.-+|+.+.+... +++
T Consensus 507 ~~~--~~~--~~~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 507 DNN--PGL--LPLVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred hcC--chH--HHHHHHHHhhhHHHHHH-HHh
Confidence 111 122 44566667777665554 443
No 56
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2.4e-13 Score=132.26 Aligned_cols=77 Identities=30% Similarity=0.486 Sum_probs=73.7
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
.+++|++++|.|+.|++||+||+|++|=+||+|+|++.++|+.++.+++++||.|.|+|+++|. ++++.||+|....
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide-~GKisLSIr~~~e 78 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE-NGKISLSIRKLEE 78 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeecc-CCCcceehHHhhh
Confidence 3678999999999999999999999999999999999999999999999999999999999998 9999999998754
No 57
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.8e-11 Score=139.00 Aligned_cols=248 Identities=13% Similarity=0.110 Sum_probs=198.2
Q ss_pred CchHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1658 PRTPDEFERLVRS-SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1658 p~a~~~ferll~~-~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
.++...+++++.. .|++..+=...+.....+.++|+|..+|+..++..|+|-+ .+.++-..+.. .. +..+.-
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~--dmdlySN~LYv---~~--~~skLs 316 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD--DMDLYSNVLYV---KN--DKSKLS 316 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch--hHHHHhHHHHH---Hh--hhHHHH
Confidence 4566778888865 8999888888888888999999999999999999998643 22233322222 11 112333
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
-+.+.+++.+... +.-.-.+++|...+++++|...|+++++.+|....+|..+++=++.. +...|.+.|.||++.+|.
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence 3344444444332 55556778888889999999999999999999999999999999999 999999999999999988
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~ 1894 (1924)
+ ..+|+.+||.|.-++.+.=|.-.|++|+..-|.+..+|..+++.|.+.++++.|...|.||+. ...-.. ..+.+
T Consensus 397 D--yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~-~~l~~ 471 (559)
T KOG1155|consen 397 D--YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEG-SALVR 471 (559)
T ss_pred h--HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccch-HHHHH
Confidence 7 489999999999999999999999999999999999999999999999999999999999998 433222 45667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1895 YLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1895 yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..++.++.++.++|...|++.++
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 77888888888999888888877
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=4.9e-10 Score=142.16 Aligned_cols=267 Identities=12% Similarity=0.082 Sum_probs=203.8
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHH
Q 000176 1645 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1724 (1924)
Q Consensus 1645 ~~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le 1724 (1924)
+...-.....++.+.+.+...+.....|+....++-.+....++|+.+.|...++++.+..|... +.+.+.+..+.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~----l~~~~~~a~l~ 163 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN----ILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHH
Confidence 33444445566777888888888777787777777777778888888888888888887665322 33556667777
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHh-------------------------
Q 000176 1725 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKK------------------------- 1778 (1924)
Q Consensus 1725 ~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~------------------------- 1778 (1924)
...+ +.+.|.+.++++.+..|.. .++..++.+|.+.|++++|.+++.++.+.
T Consensus 164 l~~~--~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 164 LAQN--ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 4588888888888887764 67777777777777777666655554422
Q ss_pred -------------cC----CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH--HHHHHHHHHHHcCCHHHHH
Q 000176 1779 -------------FK----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK--FISQTAILEFKNGVADRGR 1838 (1924)
Q Consensus 1779 -------------~~----~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~--~~~~~A~le~~~g~~e~Ar 1838 (1924)
.| +++.+|+.++..+... ++++|.++++++++..|++.... .+..+.. ...++.+.++
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~--l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR--LKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh--cCCCChHHHH
Confidence 22 3778889999988888 99999999999999999875322 2333332 3457889999
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1839 SMFEGILSEYPKRT--DLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1839 ~lfe~aL~~~Pk~~--dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
..++++++..|++. .+...|+.++++.|++++|+..|+++......|+.. .+..+.....+.|+.+.+.+++++|+
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--DLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999 889999999999999999999999533323666655 35588999999999999999999999
Q ss_pred HHHHh
Q 000176 1917 EYVES 1921 (1924)
Q Consensus 1917 e~v~~ 1921 (1924)
..+-+
T Consensus 398 ~~~~~ 402 (409)
T TIGR00540 398 GLMLA 402 (409)
T ss_pred HHHhc
Confidence 87754
No 59
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.38 E-value=1.2e-12 Score=122.50 Aligned_cols=71 Identities=35% Similarity=0.632 Sum_probs=66.8
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCC---CccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVT 1435 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~---~~~f~~G~~V~~kVl~vd~e~~ri~LS 1435 (1924)
+++|++|.|+|++++++|+||+|+++++|+||++++||.++.+| .+.|++||.|+|+|+++|+++++|.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSSSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCCCCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 57999999999999999999999999999999999999997764 589999999999999999999999886
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.2e-10 Score=134.80 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
...|..+.......+ +.++|.+.|+++++..|.. ..|..++.+|...|++++|.+.|++++...+....+|..++.+
T Consensus 31 ~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQG--DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 356777777778888 5599999999999988764 8999999999999999999999999999999999999999999
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~a 1871 (1924)
+... ++++|...|++++...+.......|..+|..++..|++++|...|++++...|.+...|..++.++...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999 999999999999986543344578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1872 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1872 r~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..+|++++. ..|... ..|.....+....|+.+.++.+.+.+..
T Consensus 189 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQ--TYNQTA-ESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHH--hCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999998 455555 3455667788888999999888776654
No 61
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.37 E-value=1.4e-12 Score=121.90 Aligned_cols=71 Identities=48% Similarity=0.793 Sum_probs=65.4
Q ss_pred cccCCcEEEEEEeeeeceeEEEEecCCcceeeccCCCCCCCCCCccCCCcEEEEEEEEEcCCCcEEEEccCcc
Q 000176 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301 (1924)
Q Consensus 229 ~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~v~~~~~~~~~v~ls~~~~ 301 (1924)
||.+|++++|+|+|||||||+||||+.+++||||+++++... .+++||.+.|.|++++.+++.+.||+.+.
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~~--~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~ 71 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNFS--KLKVGQLLLCVVEKVKDDGRVVSLSADPS 71 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCccc--ccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 688999999999999999999999999999999999986433 79999999999999999999999998653
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=1.8e-10 Score=133.30 Aligned_cols=199 Identities=16% Similarity=0.117 Sum_probs=176.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HH
Q 000176 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KV 1751 (1924)
Q Consensus 1673 ~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i 1751 (1924)
.....|..++..+...+++++|...++++++..|.. ...|..+..++...+ +.+.|.+.|+++++..|.. ..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~ 101 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD-----YLAYLALALYYQQLG--ELEKAEDSFRRALTLNPNNGDV 101 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHH
Confidence 347788999999999999999999999999876642 347777778888888 5599999999999988764 88
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~--~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
|..++.+|...|++++|.+.|++++... +.....|..++..+... ++++|...|.+++...|.+ ...|..+|.++
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~ 179 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--PESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHH
Confidence 9999999999999999999999999753 45678899999999999 9999999999999998876 57899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+..|++++|...|++++...|.....|...+.++...|+.+.|+.+++.+..
T Consensus 180 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999999898888888899999999999999999888765
No 63
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.34 E-value=2.9e-12 Score=119.71 Aligned_cols=70 Identities=27% Similarity=0.464 Sum_probs=66.6
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCccc--ccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~--~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
|+++.|+|+++.++|+||+|.+ +++|+||++++++.. .+++.+.|++||.|+|+|+++|++++||.||+|
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~-~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISP-DVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCC-CcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7999999999999999999987 899999999999864 788999999999999999999999999999986
No 64
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.34 E-value=4.3e-12 Score=118.53 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=66.2
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEEC-CCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000176 758 HIHPNSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~-~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~ 834 (1924)
|+++|++++|+|++|+++|+||+|. ++++||+|++++++. ..|++||.+.|+|+++|++++++.||+|++.
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~------~~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~~ 72 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNF------SKLKVGQLLLCVVEKVKDDGRVVSLSADPSK 72 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCcc------cccCCCCEEEEEEEEEECCCCEEEEEEeecc
Confidence 4788999999999999999999995 699999999999875 6799999999999999999999999999764
No 65
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.1e-10 Score=134.98 Aligned_cols=252 Identities=15% Similarity=0.089 Sum_probs=203.4
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a 1735 (1924)
+..++...||.++..+|...+----|...+.-..+-.+.--+++.+.....+|.|.-. -..|.+...+ +-|+|
T Consensus 277 DfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCC-----iIaNYYSlr~--eHEKA 349 (559)
T KOG1155|consen 277 DFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCC-----IIANYYSLRS--EHEKA 349 (559)
T ss_pred hHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcccee-----eehhHHHHHH--hHHHH
Confidence 3889999999999999975444444444444444445555667777777777765332 2335555555 34899
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1736 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1736 ~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
...|+||++.+|.. .+|..++.-|....+...|.+.|.+|+...|.+...|+.+++.+.-. -+.-|.-.|++|++.-|
T Consensus 350 v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 350 VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP 429 (559)
T ss_pred HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC
Confidence 99999999999985 99999999999999999999999999999999999999999999888 88999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchhH
Q 000176 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS-----LPPKKM 1888 (1924)
Q Consensus 1814 ~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~-----~~pk~~ 1888 (1924)
.+ ..+|..+|+.|.+.+++++|...|.+++........++..+++++.+.++.++|-..|++.+... ..++-.
T Consensus 430 nD--sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ 507 (559)
T KOG1155|consen 430 ND--SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETI 507 (559)
T ss_pred Cc--hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 87 48999999999999999999999999999888888899999999999999999999999998721 233222
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1889 K-FLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1889 k-~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
+ .+| ...++.+++++++|.....+++.+
T Consensus 508 ka~~f--LA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 508 KARLF--LAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHH--HHHHHHhhcchHHHHHHHHHHhcC
Confidence 1 234 567899999999988776666543
No 66
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.34 E-value=4.2e-10 Score=153.51 Aligned_cols=260 Identities=10% Similarity=0.023 Sum_probs=200.9
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERAL------------------------------- 1702 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL------------------------------- 1702 (1924)
.++..++...|++++..+|++..+|+.|+..+...+..++|...+++++
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHH
Confidence 3557888999999999999999999999888877777666655555332
Q ss_pred ---------------HhcCCcchh--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhC
Q 000176 1703 ---------------QTINIREEN--EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD--PKKVHLALLGLYERTE 1763 (1924)
Q Consensus 1703 ---------------~~i~~~ee~--ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~--~~~i~~~l~~i~~~~g 1763 (1924)
+..+...+. .....++.++......+ +.+.|+..|+++++..+ +......++.+|...+
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g--~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD--RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 221111000 00111222122234556 45889999999998863 2333344688999999
Q ss_pred ChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC-------------CChHHHHHHHH
Q 000176 1764 QNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-------------HKHIKFISQTA 1825 (1924)
Q Consensus 1764 k~e~A~~~fe~~lk~~~~~----~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~-------------~~~~~~~~~~A 1825 (1924)
++++|...|++++...+.. ...+..++..++++ ++++|.++|++++...|. .....++..+|
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 9999999999998766543 45667777777788 999999999999998763 22346788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCH
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1905 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~ 1905 (1924)
.++...|++++|..+|++++...|.+..+|..++.++...|++++|..+|++++. +.|+.. .++...+......|++
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~-~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNI-NLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCh-HHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999999999999999999999 778887 4777777788889999
Q ss_pred HHHHHHHHHHHHH
Q 000176 1906 ERIEYVKQKAMEY 1918 (1924)
Q Consensus 1906 ~~~~~v~~rAle~ 1918 (1924)
+.++.+++++++.
T Consensus 444 ~~A~~~~~~ll~~ 456 (765)
T PRK10049 444 RQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 67
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.33 E-value=1.3e-11 Score=147.54 Aligned_cols=139 Identities=24% Similarity=0.302 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh-CChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERT-EQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~-gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
+|++||++..+.+ ..+.||.+|++|++..+. ..+|.++|.++.+. ++.+.|..+|+++++.|+.+..+|+.|++|+
T Consensus 3 v~i~~m~~~~r~~--g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTE--GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 7999999999998 679999999999976554 49999999998885 4555599999999999999999999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
+.. +.+.||.+|+|++..++... .-.+|..|.+||.++|+.+..+.+++++...+|....++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999 99999999999999998876 5679999999999999999999999999999998655544
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=3.5e-10 Score=148.80 Aligned_cols=238 Identities=12% Similarity=-0.038 Sum_probs=179.0
Q ss_pred hCCCCHHHHHHHHHHH--HH---cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH-HcCC----CCHHHHHHHH
Q 000176 1670 SSPNSSFVWIKYMAFM--LS---MADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN-EYGN----PPEEAVVKVF 1739 (1924)
Q Consensus 1670 ~~P~s~~~W~~y~~~~--~~---~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~-~~g~----~~~e~a~~vf 1739 (1924)
..|.+.+.|..|+.-. +. ...+++|...|++|++..|... ....+++++.+.. ..+. .+.++|...+
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a---~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI---APYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 3456666666665542 21 2357899999999998877432 1222333222211 1111 0258899999
Q ss_pred HHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh
Q 000176 1740 QRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH 1817 (1924)
Q Consensus 1740 erAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~ 1817 (1924)
++|++..|.. ..|..++.++...|++++|...|+++++..|.++.+|+.++..+... ++++|...|++++...|.+.
T Consensus 328 ~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~- 406 (553)
T PRK12370 328 IKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA- 406 (553)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-
Confidence 9999999875 89999999999999999999999999999999999999999999999 99999999999999999874
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~-Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
..+..++..++..|++++|...|++++... |.....|..++.++...|++++|+..|+++.. .+|... ..+....
T Consensus 407 -~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~-~~~~~l~ 482 (553)
T PRK12370 407 -AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGL-IAVNLLY 482 (553)
T ss_pred -hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhH-HHHHHHH
Confidence 444455666777899999999999999875 77888899999999999999999999999877 455433 2343333
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 000176 1897 EYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1897 ~~E~~~G~~~~~~~v~~rAle 1917 (1924)
......| +.+...+++.++
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHhccH--HHHHHHHHHHHH
Confidence 3334444 355555555443
No 69
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=99.32 E-value=1.1e-12 Score=153.26 Aligned_cols=133 Identities=15% Similarity=0.148 Sum_probs=116.2
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeC--CceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeecc
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIG--PHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~--~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~ 1336 (1924)
+|++|.|+|++|.++ |+||+|. +++.|+||++|+++.|..+|.+.+++|+.+.|+||.+|++ +++|.||+|..
T Consensus 17 ~GdvV~g~V~~I~d~--GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~e---kg~IdLS~K~v 91 (319)
T PTZ00248 17 EDDLVMVKVVRITEM--GAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKE---KGYIDLSKKRV 91 (319)
T ss_pred CCCEEEEEEEEEeCC--eEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCC---CCEEEEEeeec
Confidence 799999999999999 9999996 5899999999999999999999999999999999999987 68999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEee-ceEEEE------eCCCcEEEEECccCCCcccCCCC
Q 000176 1337 LDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTS-KGCFIM------LSRKLDAKVLLSNLSDGYVESPE 1409 (1924)
Q Consensus 1337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~-~G~fV~------l~~~v~g~v~~selsd~~~~~~~ 1409 (1924)
. .+| +......++.|+++.|.|.++.+ +|+|++ .-+..+++.|+.+.+...+.+|.
T Consensus 92 ~-----~~p------------w~~~~e~~~~g~~v~~~V~~ia~~~g~~~eely~~i~~pl~~~~gh~y~af~~~v~~~~ 154 (319)
T PTZ00248 92 S-----PED------------IEACEEKFSKSKKVHSIMRHIAQKHGMSVEELYTKIIWPLYKKYGHALDALKEALTNPD 154 (319)
T ss_pred c-----cch------------HHHHHHhCcCCCEEEEEEEEchhhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCch
Confidence 7 333 45556689999999999999955 999997 55678899999888877677776
Q ss_pred ccCC
Q 000176 1410 KEFP 1413 (1924)
Q Consensus 1410 ~~f~ 1413 (1924)
..|.
T Consensus 155 evl~ 158 (319)
T PTZ00248 155 NVFE 158 (319)
T ss_pred hhhc
Confidence 5554
No 70
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.31 E-value=8.5e-10 Score=151.49 Aligned_cols=250 Identities=12% Similarity=0.025 Sum_probs=133.2
Q ss_pred CCchHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000176 1657 APRTPDEFERLVRSSP-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P-~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a 1735 (1924)
..++...|+++..... -+...|..++..+.+.|++++|..+|+++... ....+ ...|..+++.+.+.| ..+.|
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD---~vTYnsLI~a~~k~G--~~deA 561 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPD---RVVFNALISACGQSG--AVDRA 561 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHCC--CHHHH
Confidence 4445555555554321 24556666666666666666666666665532 11111 234555555555555 34666
Q ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1736 VKVFQRALQY----CDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1736 ~~vferAl~~----~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~-~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
.++|+++... .|+...|..++..|.+.|++++|.++|+.|.+.. +.+...|..++..+.+. ++++|..+|.++.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6666665431 2344556666666666666666666666665543 34555566666655555 6666666666655
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~-Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
+..-. ....+|..+...+.+.|++++|..+|+.+.+.. +-+...|+.++..+.+.|+++.|..+|+.+....+.|+.
T Consensus 642 ~~Gv~-PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv- 719 (1060)
T PLN03218 642 KKGVK-PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV- 719 (1060)
T ss_pred HcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-
Confidence 44211 112455555555555555666666655555432 223445555555555555555555555555543344432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1889 KFLFKKYLEYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1889 k~lw~~yl~~E~~~G~~~~~~~v~~rA 1915 (1924)
..|+..+....+.|+.++|..+|+++
T Consensus 720 -vtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 720 -STMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 24555555555555555555555544
No 71
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.31 E-value=3.8e-10 Score=153.89 Aligned_cols=253 Identities=10% Similarity=0.002 Sum_probs=177.7
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC---
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP--- 1731 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~--- 1731 (1924)
++.+++...+++++..+|++.. |..++..+...++.++|...++++++..|... .+|..|..+....+.+.
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~-----~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ-----QYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHHHH
Confidence 4477777788888888888888 88888888888888888888888887766432 35555555544433210
Q ss_pred -----------------------------------------HHHHHHHHHHHHhcC---CCH-----HHHHHHHHHHHHh
Q 000176 1732 -----------------------------------------EEAVVKVFQRALQYC---DPK-----KVHLALLGLYERT 1762 (1924)
Q Consensus 1732 -----------------------------------------~e~a~~vferAl~~~---~~~-----~i~~~l~~i~~~~ 1762 (1924)
.+.|.+.|+++++.. |.. ..++..+..+...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 022334444444331 111 1222212233455
Q ss_pred CChHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHH
Q 000176 1763 EQNKLADELLYKMIKKF---KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADR 1836 (1924)
Q Consensus 1763 gk~e~A~~~fe~~lk~~---~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~--~~~~~~~~A~le~~~g~~e~ 1836 (1924)
+++++|...|+++++.. |.....| ++..++.. ++++|..+|+++++..|... ....+..++..+.+.|++++
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 78888888888888764 3334455 47777777 88999999988887766541 23566677777788899999
Q ss_pred HHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1837 GRSMFEGILSEYPK---------------RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1837 Ar~lfe~aL~~~Pk---------------~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
|..+|++++...|. ...++..++.++...|+.++|+.+|++++. ..|.+. .+|...+.....
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~-~l~~~lA~l~~~ 405 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQ-GLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHh
Confidence 99999998887763 234667788888889999999999999988 677776 689999999999
Q ss_pred cCCHHHHHHHHHHHHHH
Q 000176 1902 VGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1902 ~G~~~~~~~v~~rAle~ 1918 (1924)
.|+.+.|..++++|++.
T Consensus 406 ~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 406 RGWPRAAENELKKAEVL 422 (765)
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 99999999999998874
No 72
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.31 E-value=1.7e-09 Score=136.55 Aligned_cols=224 Identities=13% Similarity=0.125 Sum_probs=173.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 000176 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYE 1760 (1924)
Q Consensus 1682 ~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~ 1760 (1924)
+....+.|+++.|...+++|.+..|... +...+....+....+ +.+.|.+.++++.+..|.. .++..++.+|.
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~----~~~~l~~a~l~l~~g--~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~ 198 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQ----LPVEITRVRIQLARN--ENHAARHGVDKLLEVAPRHPEVLRLAEQAYI 198 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4444777888888888888876554311 122223345666667 4477888888888777764 67777777777
Q ss_pred HhCChHHHHHHHHHHHH------------------------------------------hcCCCHHHHHHHHHHHHhc-C
Q 000176 1761 RTEQNKLADELLYKMIK------------------------------------------KFKHSCKVWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1761 ~~gk~e~A~~~fe~~lk------------------------------------------~~~~~~~vw~~~a~~l~~~-~ 1797 (1924)
+.|++++|.+++.++.+ ..++++.++..|+..+... +
T Consensus 199 ~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 199 RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 77777777755555442 3345788889999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
.++|..+++++++..+ + ..+...|+++. .++++++...+++.++.+|++.+++..++.+..+.+++++|+..|++
T Consensus 279 ~~~A~~~L~~~l~~~~-~--~~l~~l~~~l~--~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 279 HDTAQQIILDGLKRQY-D--ERLVLLIPRLK--TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHHHhcCC-C--HHHHHHHhhcc--CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999998543 3 36677777653 48999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1878 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1878 al~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
++. ..|+.. .+..+...+...|+.+.+..+|.+++..+.
T Consensus 354 al~--~~P~~~--~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 354 ALK--QRPDAY--DYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHh--cCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 999 666655 466788889999999999999999998764
No 73
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.29 E-value=8.1e-12 Score=116.76 Aligned_cols=70 Identities=30% Similarity=0.565 Sum_probs=67.2
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc--cCCCCccCCCCcEEEEEEEEEeCCCCEEEEEee
Q 000176 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437 (1924)
Q Consensus 1368 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~--~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk 1437 (1924)
|++|.|+|+++.++|+||+|+++++|++|+++++|.. .++|.+.|++||.|+|+|+++|+++++|.||+|
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7899999999999999999999999999999999864 789999999999999999999999999999986
No 74
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.28 E-value=1.4e-09 Score=137.82 Aligned_cols=258 Identities=16% Similarity=0.171 Sum_probs=184.9
Q ss_pred HhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000176 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731 (1924)
Q Consensus 1652 ~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~ 1731 (1924)
...++..+|...+...+..+|.++.+|..++..+.++|+++++...+--|--..|..- .+|..+..+-.++|++
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~-----e~W~~ladls~~~~~i- 223 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY-----ELWKRLADLSEQLGNI- 223 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHhcccH-
Confidence 3457789999999999999999999999999999999999999988877775555422 4899999999999954
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHhc-CHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-----KVWLRRVQRLLKQ-QQEGVQAV 1804 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~-----~vw~~~a~~l~~~-~~~~A~~l 1804 (1924)
+.|+-.|.||++.+|.. +.....+.+|.++|++..|.+.|.+++...|+.. ..-..+++++... +-+.|.+.
T Consensus 224 -~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 -NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred -HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999986 8999999999999999999999999998776322 2223556666666 55888888
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH--------------------------------------------
Q 000176 1805 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM-------------------------------------------- 1840 (1924)
Q Consensus 1805 ~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~l-------------------------------------------- 1840 (1924)
++.++..........-+.-+|.++.+...++.|...
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 888887433322222333333333333322222111
Q ss_pred -------------HHHHHHh----C--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000176 1841 -------------FEGILSE----Y--P-KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900 (1924)
Q Consensus 1841 -------------fe~aL~~----~--P-k~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~ 1900 (1924)
.+-++.. . | ...+++...++.+...|.+..|..+|-.++. .++.+..++|.+....+.
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~--~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN--REGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc--CccccchhhhHHHHHHHH
Confidence 1111111 1 1 2345666777777777777778887777776 444333467777777777
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 000176 1901 SVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1901 ~~G~~~~~~~v~~rAle~ 1918 (1924)
..|.++.|...|++++..
T Consensus 461 ~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HHhhHHHHHHHHHHHHhc
Confidence 777777777777777653
No 75
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=3.8e-10 Score=133.42 Aligned_cols=232 Identities=13% Similarity=0.079 Sum_probs=195.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHH
Q 000176 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALL 1756 (1924)
Q Consensus 1678 W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~ 1756 (1924)
...-+-|++-.|+.-.|...++.+++..|-.. +++|.+..++.... +.++....|..|...+|.+ .+|+..+
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-----~lyI~~a~~y~d~~--~~~~~~~~F~~A~~ldp~n~dvYyHRg 401 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-----SLYIKRAAAYADEN--QSEKMWKDFNKAEDLDPENPDVYYHRG 401 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-----hHHHHHHHHHhhhh--ccHHHHHHHHHHHhcCCCCCchhHhHH
Confidence 33445567778999999999999998666322 34555555555555 3488999999999999986 9999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000176 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835 (1924)
Q Consensus 1757 ~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e 1835 (1924)
.++.-.+++++|..-|++++...|.+.-.+..++-.++++ +++++...|+.+.+.+|.. ++++..||+.+..+++++
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHhHH
Confidence 9999999999999999999999999999999999999999 9999999999999999998 599999999999999999
Q ss_pred HHHHHHHHHHHhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1836 RGRSMFEGILSEYPK------RTDLWSIYLDQEIR-LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1836 ~Ar~lfe~aL~~~Pk------~~dlw~~y~~le~k-~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
.|...|..++...|. +...+..-+-+..+ .+++.+|..|+++|+. +.|+-- ..+.-...||.+.|++++|
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--~Dpkce-~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--LDPKCE-QAYETLAQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--cCchHH-HHHHHHHHHHHHHhhHHHH
Confidence 999999999999998 43322222222222 3899999999999999 777655 6788999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 000176 1909 EYVKQKAMEYVES 1921 (1924)
Q Consensus 1909 ~~v~~rAle~v~~ 1921 (1924)
..+|++++.+.++
T Consensus 557 ielFEksa~lArt 569 (606)
T KOG0547|consen 557 IELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998876
No 76
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.28 E-value=6.4e-10 Score=132.53 Aligned_cols=257 Identities=18% Similarity=0.282 Sum_probs=185.7
Q ss_pred CchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC------
Q 000176 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP------ 1730 (1924)
Q Consensus 1658 p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~-e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~------ 1730 (1924)
-+-...|..+|..+|+++++|+.-|.+++.-+ .++.||+++.|+|+..|..+ .+|..|+.+|+.+-+-
T Consensus 122 ~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp-----~Lw~eyfrmEL~~~~Kl~~rr~ 196 (568)
T KOG2396|consen 122 GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSP-----KLWKEYFRMELMYAEKLRNRRE 196 (568)
T ss_pred hHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34556899999999999999999999987765 49999999999998777443 4899999998876420
Q ss_pred ----C---------------------------------------------------------------------------
Q 000176 1731 ----P--------------------------------------------------------------------------- 1731 (1924)
Q Consensus 1731 ----~--------------------------------------------------------------------------- 1731 (1924)
+
T Consensus 197 ~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i 276 (568)
T KOG2396|consen 197 ELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEI 276 (568)
T ss_pred HhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHH
Confidence 0
Q ss_pred ---------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHH-------------------------------
Q 000176 1732 ---------------------EEAVVKVFQRALQYCDPKKVHLALLGLY------------------------------- 1759 (1924)
Q Consensus 1732 ---------------------~e~a~~vferAl~~~~~~~i~~~l~~i~------------------------------- 1759 (1924)
.+...++|+.|+++-+...+|..|+.++
T Consensus 277 ~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~ 356 (568)
T KOG2396|consen 277 LSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSEC 356 (568)
T ss_pred HHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccc
Confidence 3344556666666666666666665532
Q ss_pred ---------HHhCChHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCCh----------
Q 000176 1760 ---------ERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKH---------- 1817 (1924)
Q Consensus 1760 ---------~~~gk~e~A~~~fe~~l-k~~~~~~~vw~~~a~~l~~~--~~~~A~~l~~ral~~~p~~~~---------- 1817 (1924)
........|++.-.+++ ..|.++.++|..+.+.+... +++--...+-..++..+...+
T Consensus 357 ~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~ 436 (568)
T KOG2396|consen 357 LYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEG 436 (568)
T ss_pred hHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhc
Confidence 11122344555555555 45678899999888877743 222211111122222222222
Q ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHH
Q 000176 1818 -----------------------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIR 1872 (1924)
Q Consensus 1818 -----------------------~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~--gd~~~ar 1872 (1924)
..+-..|-.++++.|-+..||..|.++...-|-..+++..++++|..+ -+...+|
T Consensus 437 dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r 516 (568)
T KOG2396|consen 437 DSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIR 516 (568)
T ss_pred cchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHH
Confidence 344555566677888899999999999999999999999999999754 3588999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000176 1873 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922 (1924)
Q Consensus 1873 ~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~ 1922 (1924)
.+|++|+. ..-.+. .+|..|+.+|..+|..+.+-.+|+||+..++-.
T Consensus 517 ~~yd~a~~--~fg~d~-~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 517 EYYDRALR--EFGADS-DLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHH--HhCCCh-HHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 99999998 333555 799999999999999999999999999988753
No 77
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.26 E-value=1.2e-09 Score=130.79 Aligned_cols=265 Identities=18% Similarity=0.238 Sum_probs=203.1
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHH
Q 000176 1645 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1724 (1924)
Q Consensus 1645 ~~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le 1724 (1924)
|...-.+.......+.++.||+++...|.++.+|..|+..++...+++....+|.|||...-. +.+|.-|+..-
T Consensus 23 w~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn------lDLW~lYl~YV 96 (656)
T KOG1914|consen 23 WSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN------LDLWKLYLSYV 96 (656)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh------HhHHHHHHHHH
Confidence 655555554455889999999999999999999999999999999999999999999976542 67999999885
Q ss_pred HHcCC-CC--HHHHHHHHHHHHhcCC----CHHHHHHHHHHH---------HHhCChHHHHHHHHHHHHhc-CCCHHHHH
Q 000176 1725 NEYGN-PP--EEAVVKVFQRALQYCD----PKKVHLALLGLY---------ERTEQNKLADELLYKMIKKF-KHSCKVWL 1787 (1924)
Q Consensus 1725 ~~~g~-~~--~e~a~~vferAl~~~~----~~~i~~~l~~i~---------~~~gk~e~A~~~fe~~lk~~-~~~~~vw~ 1787 (1924)
.+... .+ .+...+.|+-|+..+. ...+|..|++++ +...+++..+.+|++|+... ..-.++|.
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~ 176 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK 176 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 55432 11 2445566777777664 248999999965 45568889999999999765 44578999
Q ss_pred HHHHHHHhc--------------CHHHHHHHHHHHHHhC----------CC------CChHHHHHHHHHHHHHcCC----
Q 000176 1788 RRVQRLLKQ--------------QQEGVQAVVQRALLSL----------PR------HKHIKFISQTAILEFKNGV---- 1833 (1924)
Q Consensus 1788 ~~a~~l~~~--------------~~~~A~~l~~ral~~~----------p~------~~~~~~~~~~A~le~~~g~---- 1833 (1924)
.|..|...- .+..||++++.....- |. ...+++|.+|..+|..++-
T Consensus 177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~ 256 (656)
T KOG1914|consen 177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLD 256 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccc
Confidence 999998743 4666787777654321 11 1236789999999986653
Q ss_pred ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 000176 1834 ----ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD--------------VDLIRGLFERAISLSLPPKKMKFLFKKY 1895 (1924)
Q Consensus 1834 ----~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd--------------~~~ar~lferal~~~~~pk~~k~lw~~y 1895 (1924)
-.|..-.|+++|...+-..++|..|..+....++ .++++.+|||++. ...+..+.++..|
T Consensus 257 ~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~--~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 257 GTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE--GLLKENKLLYFAL 334 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 2356667999999999999999999998887766 7889999999998 3333445789999
Q ss_pred HHHHHHcCC---HHHHHHHHHHHHH
Q 000176 1896 LEYEKSVGE---EERIEYVKQKAME 1917 (1924)
Q Consensus 1896 l~~E~~~G~---~~~~~~v~~rAle 1917 (1924)
.++|+..-+ .+.+...+++++.
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~ 359 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLK 359 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHh
Confidence 999887755 6666667766654
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=1.1e-09 Score=119.83 Aligned_cols=196 Identities=15% Similarity=0.095 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHH
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHL 1753 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~ 1753 (1924)
....+.++--|++.|+...|+.-+++||+..|... ..|..+...+...| ..+.|.+.|++|++..|.. ++..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~-----~a~~~~A~~Yq~~G--e~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY-----LAHLVRAHYYQKLG--ENDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHcC--ChhhHHHHHHHHHhcCCCccchhh
Confidence 34567777888899999999999999998877533 47888888888889 4599999999999999886 9999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1754 ALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1754 ~l~~i~~~~gk~e~A~~~fe~~lk~--~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
.|+.++...|++++|...|++++.. |+.....|.+.+-+.++. +++.|+..|+|+|..+|... ......|+.++.
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--~~~l~~a~~~~~ 185 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--PALLELARLHYK 185 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--hHHHHHHHHHHh
Confidence 9999999999999999999999984 578899999999999999 99999999999999999885 789999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1831 NGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~~d-lw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.|++-.||..|++.....+-..+ +|. -+.++-..||.+.+-..=.+.-.
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~~~A~sL~L-~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 186 AGDYAPARLYLERYQQRGGAQAESLLL-GIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cccchHHHHHHHHHHhcccccHHHHHH-HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999888775555 565 47888889998877665444443
No 79
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.25 E-value=1.3e-11 Score=119.12 Aligned_cols=79 Identities=47% Similarity=0.685 Sum_probs=75.6
Q ss_pred CCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEee
Q 000176 752 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1924)
Q Consensus 752 ~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSl 830 (1924)
++..++++++|+++.|.|++++++|+||++.+++.||+|.+++++.+..++.+.|++||+|+|+|+++|.+++++.|||
T Consensus 5 l~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 5 LPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred chhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 5677888999999999999999999999999999999999999999999999999999999999999999999999996
No 80
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.25 E-value=1.4e-11 Score=115.08 Aligned_cols=71 Identities=23% Similarity=0.399 Sum_probs=66.3
Q ss_pred cCCCcEEEEEEEEeec-ceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1455 LHVGDIVIGQIKRVES-YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~-~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
+++|++|.|+|+++.+ ||+||+|.+ +.+|++|+|+++|+++.++.+.|++||.|+|+|+++|. +||.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~-~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPF-GKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCC-CCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4789999999999986 899999976 89999999999999999999999999999999999984 99999986
No 81
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=99.25 E-value=2e-11 Score=114.48 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=65.6
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
.+|++++|+|+++.+||+||+|.+.+.+||||+|++++.++.++.+.|++||.|+++|+++|.++ ||+||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 58999999999999999999995434799999999999999999999999999999999999876 999986
No 82
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.25 E-value=3.3e-09 Score=145.78 Aligned_cols=253 Identities=9% Similarity=0.027 Sum_probs=205.7
Q ss_pred CCCCchHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1655 KDAPRTPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~-P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
++..++...|+++.... +.+...|..++..+.+.|+++.|+.+|+++.+.-.. .+ ...|-.++..+.+.| ..+
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-Pd---vvTynaLI~gy~k~G--~~e 524 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-AN---VHTFGALIDGCARAG--QVA 524 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHHCc--CHH
Confidence 34667777888877644 346888999999999999999999999998864211 11 457889999989999 569
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1734 AVVKVFQRALQY--CDPKKVHLALLGLYERTEQNKLADELLYKMIKK---FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1734 ~a~~vferAl~~--~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~---~~~~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
+|.++|+++.+. .|+...|..++..|.+.|++++|.++|+.|... ...+...|..++..+.+. ++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998764 466788999999999999999999999999763 245677888888888888 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1885 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~--~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~p 1885 (1924)
+.+..... ...+|..+...+.+.|++++|..+|+..... .|+ ...|..+++.+.+.|+++.|..+|+.+......|
T Consensus 605 M~e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 605 IHEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 98875332 3578899999999999999999999998876 344 5688999999999999999999999999866666
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1886 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1886 k~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
... .|...+....+.|+.+.|..+|++..+
T Consensus 683 d~~--tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 683 GTV--SYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred CHH--HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 544 799999999999999999999987643
No 83
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=99.23 E-value=4.1e-11 Score=113.06 Aligned_cols=74 Identities=43% Similarity=0.817 Sum_probs=70.4
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
.+++|+++.|+|+++.++|+||+|. .+++|+||++++++.+..++...|++||.|+|+|+++|+++++|.||+|
T Consensus 1 k~~~G~iv~g~V~~v~~~g~~V~l~-~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 1 KLKEGDIVEGKVTSVEDFGVFVDLG-NGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp -SSTTSEEEEEEEEEETTEEEEEES-TSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCCEEEEEEEEEECCEEEEEEC-CcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 3689999999999999999999998 4899999999999999999999999999999999999999999999987
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=2.2e-09 Score=129.94 Aligned_cols=207 Identities=13% Similarity=0.050 Sum_probs=161.3
Q ss_pred hHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000176 1660 TPDEFERLVRSSP----NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735 (1924)
Q Consensus 1660 a~~~ferll~~~P----~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a 1735 (1924)
++..|.++|...| +.+..|...+..+...|+.+.|+..|++|++..|.. ...|..+.......| +.+.|
T Consensus 45 ~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~~~~~g--~~~~A 117 (296)
T PRK11189 45 ILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-----ADAYNYLGIYLTQAG--NFDAA 117 (296)
T ss_pred HHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCC--CHHHH
Confidence 3445566664333 457889999999999999999999999999877743 358888888889999 56999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1736 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1736 ~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
.+.|++|++..|.. ..|..++.+|...|++++|.+.|++++...|.++.. ..+..+.... ++++|...|++++...+
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 99999999999875 899999999999999999999999999999887631 1122222334 89999999988876553
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGIL-------SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1814 ~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL-------~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.. .|. ++...+..|+...+ ..|+.++ ...|+..+.|..++..+.+.|+++.|+..|++|+.
T Consensus 197 ~~----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 197 KE----QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred cc----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 333 45555566766444 2444444 34455667899999999999999999999999999
No 85
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.22 E-value=3e-11 Score=112.41 Aligned_cols=69 Identities=25% Similarity=0.468 Sum_probs=65.5
Q ss_pred CcEEE-EEEEEe-ecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1458 GDIVI-GQIKRV-ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1458 G~~v~-G~V~~v-~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
|++|+ |+|+++ .+||+||+|.+ +++||+|+|++++.+++++.+.|++||.++++|+++|+++++|.||+
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~-gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKD-GLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCC-CCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 78899 999999 69999999987 79999999999999999899999999999999999999999999986
No 86
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.22 E-value=3.8e-11 Score=114.30 Aligned_cols=77 Identities=52% Similarity=0.993 Sum_probs=72.1
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
++|+++.|+|+++.++|+||+|.+.++.|++|++++++.+..++.+.|++||.|+|+|+++|++++++.||+|+++|
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~~~ 77 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKASYF 77 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEeecC
Confidence 46999999999999999999997557999999999999988888899999999999999999999999999999865
No 87
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.22 E-value=4.7e-11 Score=112.28 Aligned_cols=73 Identities=22% Similarity=0.504 Sum_probs=68.8
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
+++|+++.|+|+++.++|+||+|++ +++|++|++++++++..++.+.|++||.|+++|+++|+++++|.||+|
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~-~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGN-KVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCC-CcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4789999999999999999999987 799999999999998878889999999999999999999999999975
No 88
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.21 E-value=3.7e-11 Score=112.03 Aligned_cols=70 Identities=30% Similarity=0.558 Sum_probs=67.4
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeec
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk 831 (1924)
|+++.|+|.+++++|+||+|++++.||+|.+++++++..++.+.|++||.++|+|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECCCCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7899999999999999999999999999999999888889999999999999999999999999999986
No 89
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.20 E-value=3.9e-11 Score=111.82 Aligned_cols=70 Identities=37% Similarity=0.543 Sum_probs=66.9
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
|+++.|+|+++.++|+||+|.+ ++.||+|+|+++++++.++.+.|++||.++++|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~-~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYN-NVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECC-CCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7899999999999999999976 799999999999998889999999999999999999999999999986
No 90
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=99.20 E-value=7.8e-11 Score=111.15 Aligned_cols=73 Identities=37% Similarity=0.625 Sum_probs=70.8
Q ss_pred cCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeec
Q 000176 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1924)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk 831 (1924)
+++|+++.|+|.++.++|+||++.+++.||+|.+++++.+..++...|++||+|.|+|+++|++++++.||+|
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999986
No 91
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.19 E-value=6e-11 Score=110.16 Aligned_cols=69 Identities=28% Similarity=0.622 Sum_probs=65.9
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
|+++.|+|++|.++|+||+|++ ++.|++|++++++.+..++.+.|++||.++++|+++|+++++|.||+
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSD-HIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecC-CcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 7899999999999999999986 79999999999999888888999999999999999999999999985
No 92
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.18 E-value=3.6e-09 Score=134.24 Aligned_cols=226 Identities=12% Similarity=0.101 Sum_probs=179.0
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCc-chhhH--HHHHHHHHHHH
Q 000176 1648 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEK--LNIWVAYFNLE 1724 (1924)
Q Consensus 1648 ~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~-ee~ek--l~lWiayl~le 1724 (1924)
.+..+..++.+++...+++++..+|+++.++..++..+++.++++.|.+.+++.++.-... ++... ...|..++...
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4444445668889999999999999999999999999999999999999999999863322 21111 14454444321
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH--Hhc-
Q 000176 1725 NEYGNPPEEAVVKVFQRALQYCD-----PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL--LKQ- 1796 (1924)
Q Consensus 1725 ~~~g~~~~e~a~~vferAl~~~~-----~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l--~~~- 1796 (1924)
. .+...+.+.++.+..| ...++..++..+...|++++|.+.+++++++++++....+.....+ +..
T Consensus 240 ~------~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 240 M------ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred H------HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC
Confidence 1 1334556777777666 4599999999999999999999999999999988876432222222 223
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE--GILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe--~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
+.+.+...++++++..|.+.++.+...+|+++++.|++++|+..|+ .+++..|+..+ +..++.++.+.|+.+.|+.+
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 7899999999999999998544788899999999999999999999 57778898766 44999999999999999999
Q ss_pred HHHHHh
Q 000176 1875 FERAIS 1880 (1924)
Q Consensus 1875 feral~ 1880 (1924)
|++++.
T Consensus 393 ~~~~l~ 398 (409)
T TIGR00540 393 RQDSLG 398 (409)
T ss_pred HHHHHH
Confidence 999876
No 93
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.18 E-value=5.3e-09 Score=128.76 Aligned_cols=86 Identities=28% Similarity=0.478 Sum_probs=71.5
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS-MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~-~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
....+.+.|||.+.+-|-+..+|+.|.+++.. .++.+..|..|+||+..+.. ++-.-.+|-.|+.+++...++ ..
T Consensus 94 ~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~--dF~S~~lWdkyie~en~qks~--k~ 169 (577)
T KOG1258|consen 94 NAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL--DFLSDPLWDKYIEFENGQKSW--KR 169 (577)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc--chhccHHHHHHHHHHhccccH--HH
Confidence 36678899999999999999999999999975 56888899999999987765 444457999999999888854 77
Q ss_pred HHHHHHHHHhc
Q 000176 1735 VVKVFQRALQY 1745 (1924)
Q Consensus 1735 a~~vferAl~~ 1745 (1924)
...+|+|.+..
T Consensus 170 v~~iyeRilei 180 (577)
T KOG1258|consen 170 VANIYERILEI 180 (577)
T ss_pred HHHHHHHHHhh
Confidence 77777777754
No 94
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.17 E-value=7.8e-11 Score=113.66 Aligned_cols=79 Identities=33% Similarity=0.520 Sum_probs=74.7
Q ss_pred hhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEe
Q 000176 1358 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436 (1924)
Q Consensus 1358 ~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSl 1436 (1924)
.+..+.++++|+++.|+|+++.++|+||+|+++++|++|++++++.+..++.+.|++||.|+|+|+++|.++++|.|||
T Consensus 5 l~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 5 LPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred chhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 4556778999999999999999999999999999999999999999999999999999999999999999999999986
No 95
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=4.6e-10 Score=138.57 Aligned_cols=210 Identities=19% Similarity=0.192 Sum_probs=185.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH--HH-HcCCCCHHHHHHHHHH
Q 000176 1665 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL--EN-EYGNPPEEAVVKVFQR 1741 (1924)
Q Consensus 1665 erll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~l--e~-~~g~~~~e~a~~vfer 1741 (1924)
+.++..+|+++..|-..+.++--+++.+.|.+.|+||++..|. .=.+|--+ |. ... ..|.|...|+.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~--------faYayTLlGhE~~~~e--e~d~a~~~fr~ 480 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR--------FAYAYTLLGHESIATE--EFDKAMKSFRK 480 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc--------cchhhhhcCChhhhhH--HHHhHHHHHHh
Confidence 4566788999999999999999999999999999999976652 11233222 11 122 34889999999
Q ss_pred HHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH
Q 000176 1742 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1819 (1924)
Q Consensus 1742 Al~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~ 1819 (1924)
|+...+.. ++|+-++.+|.+.++++.|.-.|++|+.++|.+.-+...++.++.+. +.|+|..+|++|+...|.+. -
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~--l 558 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP--L 558 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc--h
Confidence 99999875 99999999999999999999999999999999999999999999999 99999999999999999884 5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
..+..|.+++..+++++|...||.+-...|+..-+....+..+.+.|..+.|..-|--|.. +.|+..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg~ 625 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKGA 625 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCccc
Confidence 7788899999999999999999999999999999999999999999999999999999888 777655
No 96
>PRK08582 hypothetical protein; Provisional
Probab=99.17 E-value=7.5e-11 Score=123.90 Aligned_cols=75 Identities=28% Similarity=0.647 Sum_probs=70.6
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.+++|++|.|+|++|++||+||+|++ +++||+|+|++++.++.++.+.|++||.|+|+|+++|. +++|.||+|+.
T Consensus 2 ~~kvG~iv~G~V~~I~~fG~fV~L~~-~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~ 76 (139)
T PRK08582 2 SIEVGSKLQGKVTGITNFGAFVELPE-GKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKA 76 (139)
T ss_pred CCcCCCEEEEEEEEEECCeEEEEECC-CCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 37899999999999999999999986 79999999999999999999999999999999999996 59999999985
No 97
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.16 E-value=1.7e-10 Score=108.57 Aligned_cols=73 Identities=25% Similarity=0.406 Sum_probs=69.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEee
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk 1437 (1924)
+++|+++.|+|+++.++|+||+|+.+++|++|+++++|++..++.+.|++||.|+++|+++|++++++.||+|
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4689999999999999999999999999999999999999888889999999999999999999999999985
No 98
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=2.3e-08 Score=113.63 Aligned_cols=225 Identities=15% Similarity=0.198 Sum_probs=187.4
Q ss_pred HhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000176 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731 (1924)
Q Consensus 1652 ~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~ 1731 (1924)
+++.....|++.|-.++..+|...++.+.+...+-+.|+.|+|..+.+..+.+.+...+ .++..-.++..-+..-|-
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~-qr~lAl~qL~~Dym~aGl-- 122 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE-QRLLALQQLGRDYMAAGL-- 122 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHHHHhhh--
Confidence 44556889999999999999999999999999999999999999999999876655433 334444455555556673
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhc-CHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQ-QQEGVQAV 1804 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~-----~~vw~~~a~~l~~~-~~~~A~~l 1804 (1924)
.+.|+++|...+..... .+....++.||.....+++|.+.-+++.+.-++. ...|..+++-++.. +.++|+.+
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 49999999988764433 4899999999999999999999999999876544 33455666666666 99999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1805 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1805 ~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d-lw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
+++|++.+|++ +.+-+..|.++...|+++.|...++++++.+|.... +...+...|.+.|+.+..+..+.+++..
T Consensus 203 l~kAlqa~~~c--vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 203 LKKALQADKKC--VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHhhCccc--eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999999988 588899999999999999999999999999998654 5677777888999999999999999983
No 99
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.15 E-value=1.1e-10 Score=108.94 Aligned_cols=71 Identities=28% Similarity=0.409 Sum_probs=67.1
Q ss_pred CCCCCEEEEEEEEEee-ceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEee
Q 000176 1365 LSPNMIVQGYVKNVTS-KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~-~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk 1437 (1924)
+++|+++.|.|+++.+ +|+|++|+++.+|++|+++++|.|+.++.+.|++||.|+|+|++++. +++.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPFGKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCCCCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4689999999999986 89999999999999999999999999999999999999999999983 99999986
No 100
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.14 E-value=2.2e-09 Score=125.25 Aligned_cols=233 Identities=19% Similarity=0.302 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHcC-----C--HHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 000176 1675 SFVWIKYMAFMLSMA-----D--VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1747 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~-----e--~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~ 1747 (1924)
..-|++++.+++..+ + ..+..-++++++...++.++ +|..|.......+ +.+.|..+.+|+..++|
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~e-----vw~dys~Y~~~is--d~q~al~tv~rg~~~sp 333 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEE-----VWFDYSEYLIGIS--DKQKALKTVERGIEMSP 333 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHhhcc--HHHHHHHHHHhcccCCC
Confidence 334999999987543 2 23445677899988888664 9999999888888 77999999999999998
Q ss_pred CHHHHHHHHHHHHHhCChHHHHHHHHHHHH----hcC--------------------------CCHHHHHHHHHHHHhc-
Q 000176 1748 PKKVHLALLGLYERTEQNKLADELLYKMIK----KFK--------------------------HSCKVWLRRVQRLLKQ- 1796 (1924)
Q Consensus 1748 ~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk----~~~--------------------------~~~~vw~~~a~~l~~~- 1796 (1924)
. +++.|+..|+-..+-+.....|+++.. +++ +-.-+|.-+.++..+.
T Consensus 334 s--L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 334 S--LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKR 411 (660)
T ss_pred c--hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 7 566666777666666666666665442 121 1123677788887887
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~-~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lf 1875 (1924)
..+.||.+|-++-+.--... .++..-|.+|+ ..|++.-|-.+|+-.|..+|+.......|..+++..++-..||++|
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h--~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGH--HVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred hHHHHHHHHHHHhccCCCCc--ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 99999999999876531222 56777777766 5689999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1876 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1876 eral~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
|.++. .+...+.+.+|.+|+++|...|+...+-.+-+|..+.+
T Consensus 490 etsv~-r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 490 ETSVE-RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHhHH-HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 98887 45556778899999999999999988887777766554
No 101
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.14 E-value=1.1e-10 Score=108.04 Aligned_cols=68 Identities=31% Similarity=0.564 Sum_probs=65.0
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
|+++.|+|+++.++|+||+|.+ ++.||+|++++++.+..++.+.|++||.|+|+|+++|++++||.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGR-GVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCC-CCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999986 7999999999999999999999999999999999999999999886
No 102
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=99.13 E-value=2.1e-10 Score=108.80 Aligned_cols=74 Identities=31% Similarity=0.556 Sum_probs=69.4
Q ss_pred CCCcEEEEEEEEeecceEEEEEecC-ceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
++|+++.|+|.++.++|+||+|.+. ++.||+|+|++++.++.++.+.|++||.|+++|+++|.+++++.||+|+
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 5799999999999999999999753 5999999999999999999999999999999999999999999999874
No 103
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.12 E-value=9e-11 Score=116.35 Aligned_cols=77 Identities=29% Similarity=0.607 Sum_probs=69.5
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc-------------------cCcccccCCCcEEEEEEEE
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-------------------DNIETIYRAGEKVKVKILK 1515 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~-------------------~~~~~~~~~Gd~Vk~~Vl~ 1515 (1924)
|++|++|.|+|++|.++|+||.|.+ ++.|++|+++++|.+. .++.+.|++||.|+|+|++
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L~~-g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~ 79 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISLPN-GLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVS 79 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEECCC-CcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEE
Confidence 5789999999999999999999976 8999999999998752 3477899999999999999
Q ss_pred EecC---CCeeEEecccccc
Q 000176 1516 VDKE---KRRISLGMKSSYF 1532 (1924)
Q Consensus 1516 id~e---~~ri~lslK~s~~ 1532 (1924)
+|++ ++||.||+|++..
T Consensus 80 ~d~~~~~~~~i~LSlr~~~v 99 (100)
T cd05693 80 LDKSKSGKKRIELSLEPELV 99 (100)
T ss_pred ccCCcCCCcEEEEEecHHHC
Confidence 9987 7999999999743
No 104
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.12 E-value=1.4e-10 Score=107.34 Aligned_cols=68 Identities=31% Similarity=0.503 Sum_probs=65.5
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEe
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lS 829 (1924)
|+++.|+|++++++|+||+|.+++.||+|.+++++.+..++.+.|++||.|+|+|+++|++++|+.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCCCCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 78899999999999999999999999999999999999999999999999999999999999999886
No 105
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.11 E-value=2e-10 Score=106.69 Aligned_cols=69 Identities=26% Similarity=0.473 Sum_probs=66.2
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEee
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSl 830 (1924)
|+++.|+|+++.++|+||++.+++.||+|.+++++.+..++...|++||.++|+|+++|++++++.|||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecCCcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 789999999999999999999999999999999998888888999999999999999999999999985
No 106
>PRK07252 hypothetical protein; Provisional
Probab=99.11 E-value=2.6e-10 Score=116.59 Aligned_cols=75 Identities=32% Similarity=0.645 Sum_probs=70.8
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1531 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~ 1531 (1924)
++|+++.|+|++|.++|+||+|.+ ++.||+|++++++.++.++.+.|++||.|+|+|+++|+++++|.||+|...
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~-~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~~ 76 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALEN-GTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTLE 76 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECC-CCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeecc
Confidence 579999999999999999999976 799999999999999988889999999999999999999999999998853
No 107
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.11 E-value=1.9e-10 Score=106.97 Aligned_cols=68 Identities=37% Similarity=0.770 Sum_probs=63.2
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCc-ccccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE-DHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~-~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
|+++.|+|+++.+||+||+|++ +++||+|+++++| .+..++.+.|++||.|+|+|+++|.+++||+||
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~-~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDG-GIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCC-CCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 7899999999999999999986 8999999999996 567778889999999999999999999999875
No 108
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.10 E-value=2.5e-10 Score=106.31 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=65.5
Q ss_pred CCEEE-EEEEEE-ecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEee
Q 000176 762 NSVVH-GYVCNI-IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1924)
Q Consensus 762 G~~~~-G~V~~i-~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSl 830 (1924)
|+++. |.|+++ .++|+||++.+++.||+|.|+++++....+...|++||.|.|+|+++|+.++++.|||
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKDGLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCCCCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 67788 999998 7999999999999999999999998888899999999999999999999999999996
No 109
>PRK08582 hypothetical protein; Provisional
Probab=99.10 E-value=3.6e-10 Score=118.79 Aligned_cols=79 Identities=25% Similarity=0.437 Sum_probs=74.6
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1444 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~ 1444 (1924)
+++|++|.|+|++|+++|+||.|+++++|+||+++++|.|+.++.+.|++||.|+|+|+++|. +++|.||+++....||
T Consensus 3 ~kvG~iv~G~V~~I~~fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~~~~~~ 81 (139)
T PRK08582 3 IEVGSKLQGKVTGITNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKAKDRPK 81 (139)
T ss_pred CcCCCEEEEEEEEEECCeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEecccCch
Confidence 689999999999999999999999999999999999999999999999999999999999996 5999999999877664
No 110
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.09 E-value=8.2e-09 Score=140.35 Aligned_cols=248 Identities=16% Similarity=0.132 Sum_probs=160.6
Q ss_pred CCCchHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1656 DAPRTPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~-P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
+..+|...|+++.... .-+...|...+..+.+.+.+++|+++++.+++.-- ..+ ..++.++++++...| ..+.
T Consensus 305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d---~~~~~~Li~~y~k~G--~~~~ 378 (697)
T PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLD---IVANTALVDLYSKWG--RMED 378 (697)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCC---eeehHHHHHHHHHCC--CHHH
Confidence 3556666666665432 22345566666666666677777777666665321 111 235666777777777 4577
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1735 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1735 a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~-~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
|.++|+++.+ ++...|..++..|.+.|+.++|.++|++|... ...+...|..++..+... ..++|.++|+.+.+..
T Consensus 379 A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 379 ARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 7777776643 33466777777777777777777777777754 345566666777766666 7777777777777654
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw 1892 (1924)
+-......|..+..++.+.|++++|..+|++.- ..| +...|..++..+..+|+.+.|+.++++++. +.|... ..|
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~-~~y 531 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKL-NNY 531 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCC-cch
Confidence 333334566777777777777777777776531 122 345677777777777777777777777766 555554 356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1893 KKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1893 ~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
...++...+.|+.++|.++++...
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 666777777777777777776654
No 111
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.08 E-value=3.1e-10 Score=102.25 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=66.3
Q ss_pred CCEEEEEEEEEccCcEEEEEEecC-ceeEEEeCCcCCCCccchhhhccccCCCCeEeeEEEeecCCCeEEEEec
Q 000176 670 GSLVSGVVDVVTPNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742 (1924)
Q Consensus 670 G~iv~g~V~~~~~~g~~V~l~~~~-~~~g~i~~~~Lsd~~~~~~~~~~~~~~G~~i~~vl~id~~~~~i~ls~K 742 (1924)
|++|+|+|.++++++++|++ .+ +++|+||.+||||+.++++.+++++++||++..+++++...+.+.+|+|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l--~~~~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAI--LPEEIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCLSNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEe--cCCCcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEEeccccEEEEecC
Confidence 78999999999999999999 45 9999999999999999999999999999999888888888888999986
No 112
>PRK05807 hypothetical protein; Provisional
Probab=99.07 E-value=4.1e-10 Score=118.05 Aligned_cols=74 Identities=31% Similarity=0.643 Sum_probs=69.6
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.+++|++|.|+|+.|.+||+||.| + +..||+|+|++++.++.++...|++||.|+|+|+++|. +++|.||+|+.
T Consensus 2 ~~~vG~vv~G~Vt~i~~~GafV~L-~-~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~ 75 (136)
T PRK05807 2 TLKAGSILEGTVVNITNFGAFVEV-E-GKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQA 75 (136)
T ss_pred CccCCCEEEEEEEEEECCeEEEEE-C-CEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 468999999999999999999999 4 68999999999999999999999999999999999997 79999999984
No 113
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=1.7e-08 Score=122.13 Aligned_cols=219 Identities=15% Similarity=0.071 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHH
Q 000176 1689 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKL 1767 (1924)
Q Consensus 1689 ~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~ 1767 (1924)
.+.+.+..-+.++|...+...+ .+...|.....++...| ..+.|...|++|++..|.. ..|..++.+|...|++++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~-~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDE-ERAQLHYERGVLYDSLG--LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcH-hhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4667788888888865554332 23467888888888889 5599999999999999875 999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1768 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1768 A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~ 1846 (1924)
|.+.|+++++..|.+..+|..++..+... ++++|.+.|+++++..|.+....+| ..+....+++++|...|++++.
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~---~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW---LYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 9999999999999999987422333 3334457899999999988776
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1847 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1847 ~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~-----~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
..+. +.|. +.......|+...+ ..|+.+... .+.|+.. ..|..........|+.++|...|++|++.
T Consensus 194 ~~~~--~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~-ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 194 KLDK--EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLC-ETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred hCCc--cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5443 3343 23444456665544 355555531 1333334 46777777788999999999999999763
No 114
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.4e-08 Score=123.12 Aligned_cols=230 Identities=17% Similarity=0.132 Sum_probs=188.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 000176 1666 RLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1745 (1924)
Q Consensus 1666 rll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~ 1745 (1924)
+++...|+++..|+..+-|++..+.+.+||..|.+|....|.-. ..|++|.......++. |.|...|-+|-+.
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg-----paWl~fghsfa~e~Eh--dQAmaaY~tAarl 375 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG-----PAWLAFGHSFAGEGEH--DQAMAAYFTAARL 375 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc-----HHHHHHhHHhhhcchH--HHHHHHHHHHHHh
Confidence 66677899999999999999999999999999999986544322 3799999888877854 8899999999998
Q ss_pred CCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC----C-ChH
Q 000176 1746 CDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR----H-KHI 1818 (1924)
Q Consensus 1746 ~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~----~-~~~ 1818 (1924)
.+.- .-++-++--|.++++++.|...|..++.++|.++-+....+-..+.. .+.+|...|+.++...+. . .+.
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 8764 34444555677899999999999999999999999888888888877 999999999999843322 1 234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK--MKFLFKKYL 1896 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~--~k~lw~~yl 1896 (1924)
.+|..+|..+.+.+.++.|...|+++|...|++.+.+...+-.+...|+++.|.+.|.+++. +.|.+ +..+.+.++
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999888889999999999999999999 66655 334566666
Q ss_pred HH-HHHcCC
Q 000176 1897 EY-EKSVGE 1904 (1924)
Q Consensus 1897 ~~-E~~~G~ 1904 (1924)
+- +...|.
T Consensus 534 e~~~~~~~~ 542 (611)
T KOG1173|consen 534 EDSECKSGV 542 (611)
T ss_pred Hhhhhhccc
Confidence 54 444443
No 115
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.06 E-value=5e-10 Score=105.36 Aligned_cols=71 Identities=32% Similarity=0.650 Sum_probs=67.9
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
|+++.|+|+++.++|+||+|.+ +++|+||++++++.++.++.+.|++||.++++|+++|++++++.||+|.
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~ 71 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGD-GVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKA 71 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCC-CCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEE
Confidence 7899999999999999999986 7999999999999999899999999999999999999999999999986
No 116
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.05 E-value=2.7e-08 Score=126.97 Aligned_cols=256 Identities=14% Similarity=0.092 Sum_probs=162.3
Q ss_pred CCchHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC-CHHH
Q 000176 1657 APRTPDEFERLVRSSPN-SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-PEEA 1734 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~-s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~-~~e~ 1734 (1924)
.-.|...|.++|..+|. -++..+-..-+..+++..+.|+..|+||++..|. .+...+++..+...+.+. ....
T Consensus 180 Y~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~-----~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 180 YRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPT-----CVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred HHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChh-----hHHHHHHHHHHHHHccchHHHHH
Confidence 44445555555555543 2233333333344455555555555555544442 122333333333333311 1234
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1735 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1735 a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
+...+.+|...++.+ .+...+++.|.-.++|+.+..+++.+++.-... ..-++.+|..+..+ ++++|..+|..++
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 555555555555544 555666667777788888888888877654222 33477778888888 8888888888888
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCc
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG----DVDLIRGLFERAISLSLPP 1885 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g----d~~~ar~lferal~~~~~p 1885 (1924)
+..+.+ ++-....+||++...|+++.|...||+++..+|++......++.+|...+ ..++|..+...++. ..|
T Consensus 335 k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~ 411 (1018)
T KOG2002|consen 335 KADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--QTP 411 (1018)
T ss_pred ccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--ccc
Confidence 888766 45667778888888888888888888888888888888777777777654 45678888888887 556
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000176 1886 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922 (1924)
Q Consensus 1886 k~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~ 1922 (1924)
... ..|.....+.+ .+|......+|.+|++.+.+.
T Consensus 412 ~d~-~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 412 VDS-EAWLELAQLLE-QTDPWASLDAYGNALDILESK 446 (1018)
T ss_pred ccH-HHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHc
Confidence 555 46666666544 456666688999998777653
No 117
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.05 E-value=5.8e-10 Score=104.56 Aligned_cols=71 Identities=34% Similarity=0.627 Sum_probs=64.1
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcc-cccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~-~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
|++|+++.|+|+++.+||+||+|.+ +++||+|+++++|. +..+..+.|++||.|+++|+++|.++++|.||
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~-~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEE-GVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCC-CCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 5789999999999999999999987 79999999999865 44466788999999999999999999999875
No 118
>PRK07252 hypothetical protein; Provisional
Probab=99.04 E-value=7.5e-10 Score=113.20 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=72.3
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
++|+++.|.|++|+++|+||++.+++.||+|.+++++.+..++...|++||.|.|+|+++|++++++.||++....
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~~~ 77 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTLEE 77 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 5799999999999999999999999999999999999998889899999999999999999999999999998754
No 119
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.04 E-value=6.3e-10 Score=101.93 Aligned_cols=66 Identities=27% Similarity=0.516 Sum_probs=60.7
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
|+++.|+|+++.++|+||+|.+ +++|++|.+++++.+.. .+.|++||.|+|+|+.+|++++||.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~-~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLS-SFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcC-CceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999976 79999999999876544 778999999999999999999999886
No 120
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.03 E-value=2.6e-08 Score=135.56 Aligned_cols=223 Identities=13% Similarity=0.085 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--CCCHHHH
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY--CDPKKVH 1752 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~--~~~~~i~ 1752 (1924)
...|..++..|.+.|++++|+++|++.... ....|-.++..+.+.| ..++|.++|+++.+. .|+...|
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--------~~vt~n~li~~y~~~g--~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEK--------TTVAWNSMLAGYALHG--YSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCCC--------ChhHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHH
Confidence 344455555555555555555555544321 0234555555555555 335555555555432 2334555
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~-~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
..++..|.+.|++++|.++|+.+++.. +.+..+|..++..|.+. ++++|+.+|+++.+. .+..|..++..|.+
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-----d~~t~n~lI~~y~~ 403 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-----NLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-----CeeeHHHHHHHHHH
Confidence 555555555555555555555555442 44445555555555555 555555555554321 12445555555555
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1831 NGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~-Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~-~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
.|+.++|..+|++.+... .-+...|..++..+.+.|..++|+.+|+.+... .+.|+. ..|...++...+.|..++|
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~--~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA--MHYACMIELLGREGLLDEA 481 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc--cchHhHHHHHHhcCCHHHH
Confidence 555555555555554431 112233445555555555555555555555431 233322 2355555555555555555
Q ss_pred HHHHHH
Q 000176 1909 EYVKQK 1914 (1924)
Q Consensus 1909 ~~v~~r 1914 (1924)
.+++++
T Consensus 482 ~~~~~~ 487 (697)
T PLN03081 482 YAMIRR 487 (697)
T ss_pred HHHHHH
Confidence 555543
No 121
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.2e-08 Score=119.01 Aligned_cols=252 Identities=11% Similarity=0.049 Sum_probs=214.2
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
..+..+.-+.++.++..+|-+.....-+++++..+++-.+--.+..+..+..|..+ --|++..-.+...+++ .
T Consensus 257 ~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a-----~sW~aVg~YYl~i~k~--s 329 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA-----LSWFAVGCYYLMIGKY--S 329 (611)
T ss_pred cChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC-----cchhhHHHHHHHhcCc--H
Confidence 45577778888899999999888888888899999998888888889998888654 4699999999999966 9
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
+||..|-+|....+.. ..|+.++..|.-.+..++|...|.+|-+.++..-.-.+-.+.=+.+. .++.|...|.+|+..
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999886 99999999999999999999999999999976644444455556666 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE----YPK---RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~----~Pk---~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
+|.+. -+....|-+.|..+.+..|..+|+.+|.- .++ -..+|+.++..+.+.+.++.|...|+++|. +.
T Consensus 410 ~P~Dp--lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~ 485 (611)
T KOG1173|consen 410 APSDP--LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LS 485 (611)
T ss_pred CCCcc--hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cC
Confidence 99984 78888999999999999999999999832 222 234799999999999999999999999999 78
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
|+.. ..+....-.....|+.+.|...|.+|+-
T Consensus 486 ~k~~-~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 486 PKDA-STHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCch-hHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 7766 4555555556778999999999998874
No 122
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.01 E-value=1.1e-09 Score=104.25 Aligned_cols=74 Identities=32% Similarity=0.558 Sum_probs=69.8
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC-CeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~-~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~ 833 (1924)
++|+++.|+|.+++++|+||++.+ ++.||+|.+++++++..++.+.|++||.|+|+|+++|++++++.||+|.+
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~ 75 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKAS 75 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEee
Confidence 369999999999999999999985 89999999999998888888999999999999999999999999999975
No 123
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.00 E-value=4.9e-08 Score=123.36 Aligned_cols=227 Identities=12% Similarity=0.125 Sum_probs=180.2
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcch-hhHH--HHHHHHHH
Q 000176 1646 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE-NEKL--NIWVAYFN 1722 (1924)
Q Consensus 1646 ~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee-~ekl--~lWiayl~ 1722 (1924)
+..+.....++.+++...+++++..+|+++.+....+..+++.|+++.|.+++.+..+......+ ..++ ..|..++.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 43445555677889999999999999999999999999999999999999999999987665322 1211 23444333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHH
Q 000176 1723 LENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1800 (1924)
Q Consensus 1723 le~~~g~~~~e~a~~vferAl~~~~-~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~ 1800 (1924)
...... +.+.+.++++..-...+ .-.++..++..+...|+.++|..+++++++ .+.++.+...|+.. .. ++++
T Consensus 238 ~~~~~~--~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~ 312 (398)
T PRK10747 238 QAMADQ--GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQ 312 (398)
T ss_pred HHHHhc--CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHH
Confidence 322222 23444444444333223 248999999999999999999999999998 45577777777664 34 8999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1801 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1801 A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+.+.+++.++..|++ ..++..+|+++...+++++|+..|++++...|+..+ +..++.++.+.|+.+.|..+|++++.
T Consensus 313 al~~~e~~lk~~P~~--~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 313 LEKVLRQQIKQHGDT--PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999987 589999999999999999999999999999998654 55789999999999999999999987
No 124
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.00 E-value=1.2e-09 Score=101.73 Aligned_cols=70 Identities=30% Similarity=0.534 Sum_probs=66.5
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
|++|.|+|.++.++|+||+|.. +..|++|.+|+++.+..++.+.|++||.++|+|+++|+++++|.||+|
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~-~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGY-KSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCC-CceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7899999999999999999965 799999999999999999999999999999999999998999999985
No 125
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=99.00 E-value=1.5e-09 Score=102.97 Aligned_cols=73 Identities=25% Similarity=0.331 Sum_probs=68.7
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC--CeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecc
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~--~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~ 832 (1924)
+.|+++.|.|.++.++|+||++.+ ++.||+|.+++++.+..++.+.|++||.|+|+|+++|.+++++.||+|.
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 469999999999999999999974 6999999999999999999999999999999999999999999999874
No 126
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=9.7e-09 Score=125.17 Aligned_cols=214 Identities=18% Similarity=0.186 Sum_probs=138.5
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhh------------------HHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE------------------KLN 1715 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~e------------------kl~ 1715 (1924)
+++.++|+-.||.++..+|.+..+|..++-.+.+.+.-..|..+++||++..|..-+.- .|.
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999998777532100 011
Q ss_pred HHHHH----HHHHH-----HcCC----C---CHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 000176 1716 IWVAY----FNLEN-----EYGN----P---PEEAVVKVFQRALQYCDP---KKVHLALLGLYERTEQNKLADELLYKMI 1776 (1924)
Q Consensus 1716 lWiay----l~le~-----~~g~----~---~~e~a~~vferAl~~~~~---~~i~~~l~~i~~~~gk~e~A~~~fe~~l 1776 (1924)
=|+.+ ..+-. ..+. . ......+.|-.|....+. -+++..|+-+|..+++|++|.+.|+.++
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL 457 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL 457 (579)
T ss_pred HHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH
Confidence 22210 00000 0000 0 012334445555544442 2666666667777777777777777777
Q ss_pred HhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 000176 1777 KKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---- 1851 (1924)
Q Consensus 1777 k~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~---- 1851 (1924)
...|.+..+|.+|+..+... +.++|.+.|.|||+.-|.. +.+|+.+|.-++..|.|.+|...|=.+|...++.
T Consensus 458 ~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y--VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~ 535 (579)
T KOG1125|consen 458 QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY--VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHN 535 (579)
T ss_pred hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe--eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccc
Confidence 76677777777777766666 7777777777777776666 4677777777777777777777777776654441
Q ss_pred ------HHHHHHHHHHHHHcCCHH
Q 000176 1852 ------TDLWSIYLDQEIRLGDVD 1869 (1924)
Q Consensus 1852 ------~dlw~~y~~le~k~gd~~ 1869 (1924)
..+|..+-...+-.+..|
T Consensus 536 ~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 536 KAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred cCCcchHHHHHHHHHHHHHcCCch
Confidence 136665554444444444
No 127
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=98.99 E-value=1.5e-09 Score=103.73 Aligned_cols=71 Identities=34% Similarity=0.601 Sum_probs=65.8
Q ss_pred CcEEEEEEEEeecceEEEEEecC--ceeEEeeccccCcccc-cCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENT--NLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~--~v~gl~h~sels~~~~-~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
|+++.|+|+++.+||+||+|++. +++||+|++++++.+. .++.+.|++||.|+++|+++| ++++.||+|..
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~ 74 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDV 74 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEec
Confidence 78999999999999999999853 6999999999999886 888899999999999999999 89999999874
No 128
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.99 E-value=6.9e-08 Score=123.41 Aligned_cols=224 Identities=16% Similarity=0.148 Sum_probs=187.4
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
...+...|...+..+|++....+--|.+.+..+++-.|..+|.+||.+.|.....-++-+|.-+. ..+ ..+.|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~----kl~--~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFW----KLG--MSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHH----hcc--chhhHH
Confidence 45778899999999999999999999999999999999999999998777543333444554433 345 348899
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHH---hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYER---TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~---~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
..|+||++.+|.. ..+..|+.+-.. ...+..+..++.++.+.++.+|.+...++.+++-. ++..+..+...|+..
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 9999999999965 777777776544 35578899999999999999999999999999888 999999999999987
Q ss_pred CCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1812 LPRHKHI--KFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1812 ~p~~~~~--~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~-~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
. .+.++ ..++.+|..++.+|++|.|..+|..+++..|++ .--..-.++++++.|+.+.+...||+++. ..|..+
T Consensus 300 t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k--~~p~~~ 376 (1018)
T KOG2002|consen 300 T-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK--QLPNNY 376 (1018)
T ss_pred h-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH--hCcchH
Confidence 6 33333 468999999999999999999999999999998 44467789999999999999999999998 556665
Q ss_pred H
Q 000176 1889 K 1889 (1924)
Q Consensus 1889 k 1889 (1924)
+
T Consensus 377 e 377 (1018)
T KOG2002|consen 377 E 377 (1018)
T ss_pred H
Confidence 3
No 129
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.99 E-value=9.6e-10 Score=102.17 Aligned_cols=68 Identities=29% Similarity=0.423 Sum_probs=63.3
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCc-ccccCcccCCCCCCEEEEEEEEeeCCCCeEEEe
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-GQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~-~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lS 829 (1924)
|+++.|.|++|+++|+||++.+++.||+|.+++++ ....++.+.|++||.|+|+|+++|.+++|+.||
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDGGIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCCCCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 67899999999999999999999999999999986 567788889999999999999999999999875
No 130
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.99 E-value=7.6e-08 Score=112.80 Aligned_cols=241 Identities=15% Similarity=0.209 Sum_probs=147.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 000176 1667 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1746 (1924)
Q Consensus 1667 ll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~ 1746 (1924)
.+..||++...|.++++++..++..++.|++|++.+..+|+-+ ..|..||.-|+... +..+.+.+|-|++.-.
T Consensus 34 rIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~-----~aw~ly~s~ELA~~--df~svE~lf~rCL~k~ 106 (660)
T COG5107 34 RIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIME-----HAWRLYMSGELARK--DFRSVESLFGRCLKKS 106 (660)
T ss_pred HhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcccc-----HHHHHHhcchhhhh--hHHHHHHHHHHHHhhh
Confidence 4577888888899999988888888999999998888887644 37888888888887 4588888888888766
Q ss_pred CCHHHHHHHHHHHHHhCC------hHHHHHHHHHHHH--hc-CCCHHHHHHHHHHHHh---------c-CHHHHHHHHHH
Q 000176 1747 DPKKVHLALLGLYERTEQ------NKLADELLYKMIK--KF-KHSCKVWLRRVQRLLK---------Q-QQEGVQAVVQR 1807 (1924)
Q Consensus 1747 ~~~~i~~~l~~i~~~~gk------~e~A~~~fe~~lk--~~-~~~~~vw~~~a~~l~~---------~-~~~~A~~l~~r 1807 (1924)
-...+|..|+.+..+-.. .-...+.|+-.+. .| +.+..+|..|+.|+.. + ++|..|..|.|
T Consensus 107 l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 107 LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 667777777776554431 1222333333332 23 5677777777777653 2 56777777777
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHh-------CC----------C-CHHHHH
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGV-------------ADRGRSMFEGILSE-------YP----------K-RTDLWS 1856 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~-------------~e~Ar~lfe~aL~~-------~P----------k-~~dlw~ 1856 (1924)
||.. |-+.--++|..|-+||...+. +-.||+.|+..... +| . ...-|.
T Consensus 187 al~t-P~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 187 ALQT-PMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHcC-ccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 7754 344334677777777764332 34566666655321 11 1 011366
Q ss_pred HHHHHHHHcC-----C--HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1857 IYLDQEIRLG-----D--VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1857 ~y~~le~k~g-----d--~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.++.+|...| + -.+.--+|+.++. ..+=.. .+|..|-.+-...+|.+.|...-.|++++
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~--y~~~~~-evw~dys~Y~~~isd~q~al~tv~rg~~~ 331 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILD--YFYYAE-EVWFDYSEYLIGISDKQKALKTVERGIEM 331 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHH--HhhhhH-HHHHHHHHHHhhccHHHHHHHHHHhcccC
Confidence 6666665321 1 1234455566555 222222 45655555555555555555555555443
No 131
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.98 E-value=1.4e-09 Score=99.57 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=60.8
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEe
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lS 829 (1924)
|+++.|.|++++++|+||++.+++.||+|.++++..... .+.|++||.|.|+|+++|++++|+.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLSSFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcCCceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 789999999999999999999999999999999865544 778999999999999999999999886
No 132
>PRK08059 general stress protein 13; Validated
Probab=98.98 E-value=1.5e-09 Score=112.35 Aligned_cols=78 Identities=36% Similarity=0.748 Sum_probs=73.4
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
+.++++|++|.|+|.++.++|+||+|.+ ++.|++|++++++.++.++.+.|++||.|+|+|+++|.+++++.||+|+.
T Consensus 2 ~~~~k~G~iv~G~V~~i~~~G~fV~i~~-~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~ 79 (123)
T PRK08059 2 MSQYEVGSVVTGKVTGIQPYGAFVALDE-ETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRAT 79 (123)
T ss_pred cccCCCCCEEEEEEEEEecceEEEEECC-CCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEc
Confidence 4568999999999999999999999986 79999999999999988888999999999999999999999999999986
No 133
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.97 E-value=2.2e-09 Score=101.00 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=69.0
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1368 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
|+++.|+|+++.++|+||+|.++++|++|++++++.+..++.+.|++||.++++|+++|++++++.||+|..
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~~ 72 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGDGVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKAK 72 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCCCCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEEc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999864
No 134
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.96 E-value=2e-09 Score=99.91 Aligned_cols=69 Identities=35% Similarity=0.783 Sum_probs=65.3
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
|+++.|+|+++.++|+||.+.+ ++.|++|++++++.++.++.+.|++||.|+++|+++|+ ++++.||+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGG-GISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECC-CCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 7899999999999999999976 79999999999999988888999999999999999998 899999986
No 135
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=98.95 E-value=3.2e-09 Score=99.62 Aligned_cols=70 Identities=24% Similarity=0.355 Sum_probs=64.5
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEe
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~-~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSl 1436 (1924)
+.|+++.|.|+++.++|+||+|.. ..+|++|+++++|.++.++.+.|++||.|+++|+++|.++ ++.||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 479999999999999999999953 2699999999999999999999999999999999999865 999987
No 136
>PHA02945 interferon resistance protein; Provisional
Probab=98.95 E-value=2.5e-09 Score=98.86 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=67.8
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecC-ceeEEeecccc--CcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSEL--SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h~sel--s~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
-.+|+++-|+|+. .+||+||.|+.- +..||+|+||+ +..++++ .+.+ +||+|.|+|+.+|+.++.|-||||.-
T Consensus 9 P~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V 84 (88)
T PHA02945 9 PNVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRM 84 (88)
T ss_pred CCCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEc
Confidence 3689999999999 999999999865 89999999955 9999999 8888 99999999999999999999999973
No 137
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.94 E-value=2.7e-09 Score=100.10 Aligned_cols=71 Identities=27% Similarity=0.407 Sum_probs=64.2
Q ss_pred cCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcc-cccCcccCCCCCCEEEEEEEEeeCCCCeEEEe
Q 000176 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-QRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1924)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~-~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lS 829 (1924)
+++|+.+.|.|++|+++|+||++.+++.||+|.+++++. ...++...|++||.|+|+|+++|.+++++.|+
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCCCCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 467999999999999999999999999999999999864 44467788999999999999999999999875
No 138
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=5.4e-08 Score=122.50 Aligned_cols=268 Identities=17% Similarity=0.253 Sum_probs=184.9
Q ss_pred HHHHHHHHHhcCC-CCchHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhcCCcchhhHHH
Q 000176 1644 EIRAAEERLLEKD-APRTPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADVEKARSIAERALQTINIREENEKLN 1715 (1924)
Q Consensus 1644 ~~~~~e~~~~~~~-~p~a~~~ferll~~~P~s~~~W~~y~~~~~~-------~~e~dkAr~v~eraL~~i~~~ee~ekl~ 1715 (1924)
+|..++.-+..+. .++....|+++| .+-++..+|..|+.|... .++++.-|.+|+|||+...++-. +-..
T Consensus 152 ~Wl~d~~~mt~s~~~~~v~~~~ekal-~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~ 229 (881)
T KOG0128|consen 152 EWLKDELSMTQSEERKEVEELFEKAL-GDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAA 229 (881)
T ss_pred HHHHHHHhhccCcchhHHHHHHHHHh-cccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHH
Confidence 4666666554333 777778899985 567899999999999863 35799999999999997776533 4467
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc-----------------------------------------------CC
Q 000176 1716 IWVAYFNLENEYGNP-PEEAVVKVFQRALQY-----------------------------------------------CD 1747 (1924)
Q Consensus 1716 lWiayl~le~~~g~~-~~e~a~~vferAl~~-----------------------------------------------~~ 1747 (1924)
+|..|..++..+-.. ..+.....|.+.+.. .+
T Consensus 230 ~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~ 309 (881)
T KOG0128|consen 230 IWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEP 309 (881)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhH
Confidence 899998887765311 112234444444432 22
Q ss_pred C-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CH--------------------------
Q 000176 1748 P-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQ-------------------------- 1798 (1924)
Q Consensus 1748 ~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~--~~-------------------------- 1798 (1924)
. ...|..|++....+|..-....+|++++..+......|+.|+.++-.. -.
T Consensus 310 ~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rall 389 (881)
T KOG0128|consen 310 IKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALL 389 (881)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHH
Confidence 2 266888888888899999999999999988888888888887755433 11
Q ss_pred ----------------------------------------------HHHHHHHHHHHHhCC------CCChHHHHHHHHH
Q 000176 1799 ----------------------------------------------EGVQAVVQRALLSLP------RHKHIKFISQTAI 1826 (1924)
Q Consensus 1799 ----------------------------------------------~~A~~l~~ral~~~p------~~~~~~~~~~~A~ 1826 (1924)
+..++.|.+|...+. ......+...||+
T Consensus 390 AleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~ 469 (881)
T KOG0128|consen 390 ALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQ 469 (881)
T ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 112223333322211 0111345666677
Q ss_pred HHH-HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000176 1827 LEF-KNGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1904 (1924)
Q Consensus 1827 le~-~~g~~e~Ar~lfe~aL~~~Pk~~d-lw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~ 1904 (1924)
+|. .+++++.||.+....+...--+.. .|..|++++...|+...+|.++.+|+.....|..+..+...|..||..+|+
T Consensus 470 ~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gt 549 (881)
T KOG0128|consen 470 VEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGT 549 (881)
T ss_pred HHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhcccc
Confidence 776 345778888888777765555555 899999999999999999998888888666666666788888899999999
Q ss_pred HHHHHHHHH
Q 000176 1905 EERIEYVKQ 1913 (1924)
Q Consensus 1905 ~~~~~~v~~ 1913 (1924)
++....+-+
T Consensus 550 l~~~~~~~~ 558 (881)
T KOG0128|consen 550 LESFDLCPE 558 (881)
T ss_pred HHHHhhhHH
Confidence 877554433
No 139
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=4.1e-08 Score=110.97 Aligned_cols=227 Identities=13% Similarity=0.080 Sum_probs=186.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLG 1757 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~ 1757 (1924)
.+.+.+++.+|-+.+|...++.+|+..+.-+ -++-+-..+.+.. +.+.|..+|...+...|.+ .+...++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~d------TfllLskvY~rid--QP~~AL~~~~~gld~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPD------TFLLLSKVYQRID--QPERALLVIGEGLDSFPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchh------HHHHHHHHHHHhc--cHHHHHHHHhhhhhcCCchhhhhhhhHH
Confidence 5677888999999999999999998877533 3444445566667 5699999999999998887 78888999
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000176 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836 (1924)
Q Consensus 1758 i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~ 1836 (1924)
+++..+++++|.++|+.+++..+.+.+..-..+.-++.. +++-|..+|.|.|+.--.+ ++++.+.|...+--+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhh
Confidence 999999999999999999998887777666666656666 8999999999999876544 5899999988888889999
Q ss_pred HHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1837 GRSMFEGILSEY--PK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1913 (1924)
Q Consensus 1837 Ar~lfe~aL~~~--Pk-~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~ 1913 (1924)
+..-|++++... |. ..|+|+.+.......||+.-|...|.-++. ..+... .-++...-++.+.|+++.|+.++.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~-ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHG-EALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchH-HHHHhHHHHHhhcCchHHHHHHHH
Confidence 999999998764 33 578999999888889999999999999998 566666 577888888999999999999988
Q ss_pred HHHHH
Q 000176 1914 KAMEY 1918 (1924)
Q Consensus 1914 rAle~ 1918 (1924)
.|...
T Consensus 454 ~A~s~ 458 (478)
T KOG1129|consen 454 AAKSV 458 (478)
T ss_pred Hhhhh
Confidence 87653
No 140
>PLN03077 Protein ECB2; Provisional
Probab=98.93 E-value=9.7e-08 Score=133.11 Aligned_cols=190 Identities=12% Similarity=0.061 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1795 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~ 1795 (1924)
+|.++++.+.+.| ..++|.++|++..+ ++...|..++..|.+.|+.++|.++|++|......+...|......+.+
T Consensus 426 ~~n~Li~~y~k~g--~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 426 VANALIEMYSKCK--CIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence 3444444444444 33444444444321 1223444444444444444445554444444333333333333333333
Q ss_pred c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1796 Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1796 ~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
. ..+.+++++..+++.--.. ...++..+..+|.+.|+++.|+.+|+.. +.+...|+.++..+.++|+.++|..+
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 3 3333333333333221111 0122233334455555555555555553 33445566666655566666666666
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1875 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1875 feral~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
|++.......|+.. .|...+......|..+++..+|+.+.
T Consensus 577 f~~M~~~g~~Pd~~--T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 577 FNRMVESGVNPDEV--TFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHcCCCCCcc--cHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 66555544444433 34444444444555555555555544
No 141
>PLN03077 Protein ECB2; Provisional
Probab=98.93 E-value=1.6e-07 Score=130.93 Aligned_cols=246 Identities=12% Similarity=0.066 Sum_probs=172.0
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
..+|...|++++...+-+...|...+..+.+.|.++.+++++..+++.-- ..+ ..+.-++++++.+.| +.+.|.
T Consensus 471 ~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~-~~~---~~~~naLi~~y~k~G--~~~~A~ 544 (857)
T PLN03077 471 CFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI-GFD---GFLPNALLDLYVRCG--RMNYAW 544 (857)
T ss_pred HHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC-Ccc---ceechHHHHHHHHcC--CHHHHH
Confidence 45566666666544444455566666666666666666666666664321 111 124456777777788 568888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~-~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
.+|++. .++...|..++..|.+.|+.++|.++|++|... ...+...|..+...+.+. ..++|.++|+++....+-
T Consensus 545 ~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 545 NQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 888876 455678888888888888888888888888764 234555566666666666 888888888888865544
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~ 1894 (1924)
......|..+..++.+.|++++|..+|+.. ...|+ ..+|..++..+..+++.+.++...++++. +.|.+. ..|..
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~-~~y~l 696 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSV-GYYIL 696 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCc-chHHH
Confidence 444577888888888888888888888875 23333 56788888888788888888888888887 677666 56666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 000176 1895 YLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1895 yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
........|+.+++.++.....
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHH
Confidence 6677777888888887776654
No 142
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.93 E-value=3.8e-09 Score=98.46 Aligned_cols=70 Identities=27% Similarity=0.334 Sum_probs=67.4
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEee
Q 000176 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437 (1924)
Q Consensus 1368 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk 1437 (1924)
|++|.|+|.++.++|+||+|+.+.+|++|++++++.+..++.+.|++||.++++|+++|++++++.||+|
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGYKSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7899999999999999999998999999999999999999999999999999999999988999999985
No 143
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=98.92 E-value=2.6e-09 Score=98.86 Aligned_cols=68 Identities=31% Similarity=0.603 Sum_probs=64.1
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
|+++.|+|+++.++|+||++.+ +..|+||.+++++.++.++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~-~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGV-KQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCC-CCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 7899999999999999999976 7999999999999988888889999999999999999999999876
No 144
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=3.3e-08 Score=111.74 Aligned_cols=215 Identities=13% Similarity=0.119 Sum_probs=183.2
Q ss_pred CchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000176 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1737 (1924)
Q Consensus 1658 p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~ 1737 (1924)
-++...|+..|...|. ++.+.-+...|.+..+.+.|..+|...+...|+. ..+......++...++ .+.|.+
T Consensus 240 r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~-----VT~l~g~ARi~eam~~--~~~a~~ 311 (478)
T KOG1129|consen 240 RRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD-----VTYLLGQARIHEAMEQ--QEDALQ 311 (478)
T ss_pred hhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch-----hhhhhhhHHHHHHHHh--HHHHHH
Confidence 3455566666665554 6677778888899999999999999999999963 2345556667777774 489999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC-
Q 000176 1738 VFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR- 1814 (1924)
Q Consensus 1738 vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~- 1814 (1924)
+|+++++..+.+ +.-...+.-|.-.++.+-|...|.+++.---.++.++.+.+...+.. ++|-+...|+||+....+
T Consensus 312 lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~ 391 (478)
T KOG1129|consen 312 LYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP 391 (478)
T ss_pred HHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc
Confidence 999999998875 55555556667789999999999999998889999999999999988 999999999999987642
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
....++|++++......||..-|...|+-+|.++|++...++.++-++.+.|+++.||.++.-|-+
T Consensus 392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 234689999999999999999999999999999999999999999999999999999999999887
No 145
>PRK08059 general stress protein 13; Validated
Probab=98.90 E-value=6.4e-09 Score=107.76 Aligned_cols=81 Identities=20% Similarity=0.419 Sum_probs=76.1
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
.++++|+++.|.|.++.++|+||.++.+++|++|++++++.++.++.+.|++||.|.|+|+++|++++++.||+|....+
T Consensus 3 ~~~k~G~iv~G~V~~i~~~G~fV~i~~~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~~~~ 82 (123)
T PRK08059 3 SQYEVGSVVTGKVTGIQPYGAFVALDEETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRATEEA 82 (123)
T ss_pred ccCCCCCEEEEEEEEEecceEEEEECCCCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEcccC
Confidence 45889999999999999999999999999999999999999998888899999999999999999999999999998765
Q ss_pred c
Q 000176 1443 T 1443 (1924)
Q Consensus 1443 ~ 1443 (1924)
|
T Consensus 83 ~ 83 (123)
T PRK08059 83 P 83 (123)
T ss_pred c
Confidence 4
No 146
>PRK05807 hypothetical protein; Provisional
Probab=98.90 E-value=6.3e-09 Score=109.16 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=70.3
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~ 1440 (1924)
+++|++|.|.|+.++++|+||.| .+..|+||++++++.|+.++...|++||.|+++|+++|. +++|.||+|...
T Consensus 3 ~~vG~vv~G~Vt~i~~~GafV~L-~~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~~ 76 (136)
T PRK05807 3 LKAGSILEGTVVNITNFGAFVEV-EGKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQAM 76 (136)
T ss_pred ccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEecc
Confidence 67899999999999999999999 578999999999999999999999999999999999997 799999999865
No 147
>PLN02789 farnesyltranstransferase
Probab=98.86 E-value=5.2e-07 Score=109.30 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=184.8
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~-e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
+..++|...++++|..+|++..+|.....++..++ .+++|...++++++..|.. ..+|.....+....+....+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-----yqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-----YQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-----hHHhHHHHHHHHHcCchhhH
Confidence 44889999999999999999999999988888888 6899999999999876643 35788766666666631126
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--------CHHHHHHH
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--------QQEGVQAV 1804 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~--------~~~~A~~l 1804 (1924)
++.+.+++|++.+|.+ .+|...+.++...+++++|++.++++++..+.+..+|...+..+... ..+++.+.
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 6788999999999875 99999999999999999999999999999999999999888665432 23577888
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------
Q 000176 1805 VQRALLSLPRHKHIKFISQTAILEFKN----GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-------------- 1866 (1924)
Q Consensus 1805 ~~ral~~~p~~~~~~~~~~~A~le~~~----g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g-------------- 1866 (1924)
..++|...|.+. .+|..+..++... +...+|...+.+++...|++..+...+++++....
T Consensus 206 ~~~aI~~~P~N~--SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILANPRNE--SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhCCCCc--CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 889999999885 7998888888773 45577999999999999999999888888887532
Q ss_pred ----CHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000176 1867 ----DVDLIRGLFERAISLSLPPKKMKFLFK 1893 (1924)
Q Consensus 1867 ----d~~~ar~lferal~~~~~pk~~k~lw~ 1893 (1924)
..++|..+++.+ . +..|=+. -+|.
T Consensus 284 ~~~~~~~~a~~~~~~l-~-~~d~ir~-~yw~ 311 (320)
T PLN02789 284 EELSDSTLAQAVCSEL-E-VADPMRR-NYWA 311 (320)
T ss_pred cccccHHHHHHHHHHH-H-hhCcHHH-HHHH
Confidence 236688888876 3 3555444 2444
No 148
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1.4e-07 Score=115.39 Aligned_cols=230 Identities=18% Similarity=0.126 Sum_probs=184.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHH
Q 000176 1680 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGL 1758 (1924)
Q Consensus 1680 ~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i 1758 (1924)
.-+.-+++.|++-+|.-+||.|++.-|. ....|..+.-.....+ .+..|...++||++..|.+ ++.++|+--
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~-----haeAW~~LG~~qaENE--~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQ-----HAEAWQKLGITQAENE--NEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChH-----HHHHHHHhhhHhhhcc--chHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 3445567889999999999999998774 3468988877766667 5688999999999999986 999999999
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHH----HH-----Hhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ----RL-----LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~----~l-----~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
|...|--..|..++..-+...+ +..|+..+. +. ... .+....++|-.|-..+|....+++...++-+|
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p--~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKP--KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCc--cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 9999999999999888765431 222332220 00 111 45666778888888888755679999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
+-.|+++||...|+.||+..|.+.-+|+.|+..+......+.|...|.||+. +.|.-. ..|....--.+..|.+++|
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yV-R~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYV-RVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCee-eeehhhhhhhhhhhhHHHH
Confidence 9999999999999999999999999999999999888899999999999999 888766 3444444456668999999
Q ss_pred HHHHHHHHHHHHh
Q 000176 1909 EYVKQKAMEYVES 1921 (1924)
Q Consensus 1909 ~~v~~rAle~v~~ 1921 (1924)
...|-.|+.+-+.
T Consensus 518 ~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 518 VKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999887654
No 149
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.85 E-value=9.4e-09 Score=94.85 Aligned_cols=67 Identities=27% Similarity=0.477 Sum_probs=61.5
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeec
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk 831 (1924)
|+.+.|.|.++.++|+||+| +++.||+|.+++++.+..++.. .+||.+.|+|+++|.+++++.||.|
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-EGVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 78899999999999999999 8899999999999887776655 4999999999999999999999975
No 150
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=98.85 E-value=5.7e-09 Score=134.01 Aligned_cols=101 Identities=26% Similarity=0.486 Sum_probs=77.9
Q ss_pred EEEeCCCCEEEEEeecccccccchhcccc-cc--ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccC----ccc
Q 000176 1423 LSVEPLSKRVEVTLKTSDSRTASQSEINN-LS--NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS----EDH 1495 (1924)
Q Consensus 1423 l~vd~e~~ri~LSlk~~~~~~~~~~~~~~-~~--~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels----~~~ 1495 (1924)
++++ +++.|.++-............+.. .. .+++|++|.|+|++|.+||+||+|.+ +++||+|+|||+ +.+
T Consensus 611 Idi~-d~G~V~I~a~d~~~~~~A~~~I~~i~~~~~~~vG~i~~GkV~~I~dfGaFVel~~-G~eGLvHISeisdls~~~r 688 (719)
T TIGR02696 611 ISIE-DDGTVYIGAADGPSAEAARAMINAIANPTMPEVGERFLGTVVKTTAFGAFVSLLP-GKDGLLHISQIRKLAGGKR 688 (719)
T ss_pred EEEe-cCcEEEEEeCCHHHHHHHHHHHHHhhCcCcCCCCCEEEEEEEEEECceEEEEecC-CceEEEEhhhccccccccC
Confidence 4555 467777776543321100011111 12 47999999999999999999999986 899999999996 468
Q ss_pred ccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1496 VDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1496 ~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
+.++.+.|++||.|+|+|++|| +++||+|+
T Consensus 689 v~~~~dv~kvGd~V~VKVl~ID-~~gKI~L~ 718 (719)
T TIGR02696 689 VENVEDVLSVGQKIQVEIADID-DRGKLSLV 718 (719)
T ss_pred cCCHHHcCCCCCEEEEEEEEEC-CCCCeeec
Confidence 8999999999999999999999 58899986
No 151
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.84 E-value=1.1e-06 Score=118.20 Aligned_cols=252 Identities=11% Similarity=0.018 Sum_probs=150.2
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|.+.|++++..+|+++.++..++..+.+.++.++|.+.++++.+..|... ..++.+.+....+. ..
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~------~~l~layL~~~~~~--~~ 186 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ------NYMTLSYLNRATDR--NY 186 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH------HHHHHHHHHHhcch--HH
Confidence 35677999999999999999999999888888999999999999999997766311 12233333322332 23
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHH-------------------------------------------------------
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLG------------------------------------------------------- 1757 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~------------------------------------------------------- 1757 (1924)
.|.+.|++++...|.+ +++..+..
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 4677777777666432 22222211
Q ss_pred ---------------------------------------------------------------------HHHHhCChHHH
Q 000176 1758 ---------------------------------------------------------------------LYERTEQNKLA 1768 (1924)
Q Consensus 1758 ---------------------------------------------------------------------i~~~~gk~e~A 1768 (1924)
.|...++.++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 23344445555
Q ss_pred HHHHHHHHHhcC----CCHHH--HHHHHHHHHhc-CHHHHHHHHHHHHHhCC-------------CCChHHHHHHHHHHH
Q 000176 1769 DELLYKMIKKFK----HSCKV--WLRRVQRLLKQ-QQEGVQAVVQRALLSLP-------------RHKHIKFISQTAILE 1828 (1924)
Q Consensus 1769 ~~~fe~~lk~~~----~~~~v--w~~~a~~l~~~-~~~~A~~l~~ral~~~p-------------~~~~~~~~~~~A~le 1828 (1924)
..+|.+++...+ ....+ ...+.-.++.+ ++++|+.++++..+..| .....+.....|+.+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 555555544221 11111 12222233444 66666666666665433 112234555556666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
.-.|+...|..+++.++...|.+..+|..+++++...|.+.+|+.+++++.. +.|+.. .+-...+.--...|+...+
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~-~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSL-ILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccH-HHHHHHHHHHHhhhhHHHH
Confidence 6677777777777777777777777777777777777777777777766666 555544 2222222233334666666
Q ss_pred HHHHHHHH
Q 000176 1909 EYVKQKAM 1916 (1924)
Q Consensus 1909 ~~v~~rAl 1916 (1924)
+.+.+..+
T Consensus 504 ~~~~~~l~ 511 (822)
T PRK14574 504 ELLTDDVI 511 (822)
T ss_pred HHHHHHHH
Confidence 55554443
No 152
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.84 E-value=1.2e-08 Score=94.11 Aligned_cols=67 Identities=25% Similarity=0.514 Sum_probs=61.5
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
|+++.|+|+++.++|+||++ + ++.||+|.|++++.+..++.. .+||.++++|+++|.++++|.||.|
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~-g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-E-GVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-C-CEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 78999999999999999999 5 799999999999988777655 3899999999999999999999975
No 153
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.83 E-value=8.2e-09 Score=100.41 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=67.6
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCc----ccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE----DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~----~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.++|++|.|+|+++.++|+||.|.+ ++.|++|++++++ .+..+..+.|++||.++|+|+++|++ +++.||+|..
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~-~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~ 81 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINS-PYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSL 81 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCC-CeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCcc
Confidence 4799999999999999999999976 7999999999996 44566778899999999999999976 9999999885
Q ss_pred cc
Q 000176 1531 YF 1532 (1924)
Q Consensus 1531 ~~ 1532 (1924)
.+
T Consensus 82 ~~ 83 (86)
T cd05789 82 KY 83 (86)
T ss_pred cc
Confidence 43
No 154
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=9e-07 Score=101.01 Aligned_cols=222 Identities=16% Similarity=0.127 Sum_probs=180.9
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHH
Q 000176 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-----KKVHLALLGLYER 1761 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-----~~i~~~l~~i~~~ 1761 (1924)
-..+.|+|.+.|-..++..| +....-+++.||..+-| ..+.|..+-+-.+...+- .-....++.=|..
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~-----~t~e~~ltLGnLfRsRG--EvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDP-----ETFEAHLTLGNLFRSRG--EVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hhcCcchHHHHHHHHHhcCc-----hhhHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 34678999999999997544 34557899999999999 559999888877765543 1567888899999
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH---HHHHHHHHHHHHcCCHHHH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI---KFISQTAILEFKNGVADRG 1837 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~---~~~~~~A~le~~~g~~e~A 1837 (1924)
+|-++.|.++|..+.....-...+...+..+|-.. ++++|.+.-++..+.-++...+ .++..+|+-+....+.++|
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999875444566777788877777 9999999999998888776443 4677788888888899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
+.++.++++.+|++..+-..+++++...|+++.|...+++++. -.|.-...+-.+....+...|+.++......++.+
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e--Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE--QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 44444444556666666777888887777777765
No 155
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.83 E-value=1.1e-08 Score=95.03 Aligned_cols=69 Identities=30% Similarity=0.518 Sum_probs=65.7
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeec
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk 831 (1924)
|+++.|.|.+++++|+||++.+++.||+|.+++++.+..++.+.|++||.|+|+|+++|+ ++++.||+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGGGISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECCCCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 688999999999999999999999999999999998888888999999999999999999 899999986
No 156
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.83 E-value=1.2e-08 Score=94.58 Aligned_cols=68 Identities=40% Similarity=0.756 Sum_probs=63.8
Q ss_pred CCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1457 ~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
+|+++.|+|.++.++|+||+|. ++.|++|.+++++.++.++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~--~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG--GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC--CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 5899999999999999999995 6999999999999888888899999999999999999999999876
No 157
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=4e-09 Score=116.87 Aligned_cols=74 Identities=34% Similarity=0.670 Sum_probs=71.2
Q ss_pred CCCcEEEEEEEEeecceEEEEEecC-ceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
.+|++|-|+|++|.+||+||.|+.- |+.||+|+||++..++.++.+..++||.|-|+|+.+|++++.|.||||.
T Consensus 10 eeGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkr 84 (269)
T COG1093 10 EEGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKR 84 (269)
T ss_pred CCCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhh
Confidence 5899999999999999999999854 8999999999999999999999999999999999999999999999988
No 158
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=98.81 E-value=9.8e-09 Score=95.01 Aligned_cols=68 Identities=31% Similarity=0.440 Sum_probs=64.4
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEe
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lS 829 (1924)
|+.+.|+|++++++|+||++.+++.||+|.+++++.+..++...|++||.|+|+|+++|++++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGVKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCCCCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 67899999999999999999999999999999998888888889999999999999999999999876
No 159
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.81 E-value=7.8e-07 Score=112.18 Aligned_cols=247 Identities=16% Similarity=0.189 Sum_probs=180.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL---NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl---~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~ 1748 (1924)
|.-...-..++..+..+|++++|...+++|++.+-.+-.-..+ ..-..|..++...+++ .+|..+|++|++....
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~--~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKY--DEAVNLYEEALTIREE 273 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHHH
Confidence 4444444557888899999999999999999873111000001 1112345566677744 9999999999986431
Q ss_pred ---------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC-----CCHH---HHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1749 ---------KKVHLALLGLYERTEQNKLADELLYKMIKKFK-----HSCK---VWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1749 ---------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~-----~~~~---vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
-.++..|+.+|...|++.+|...+++++.++. ..+. .....+..+... ++++|..+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 18899999999999999999999999998763 2333 344444444444 99999999999988
Q ss_pred hC---CCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC-C----HHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1811 SL---PRHKH---IKFISQTAILEFKNGVADRGRSMFEGILSEY----PK-R----TDLWSIYLDQEIRLGDVDLIRGLF 1875 (1924)
Q Consensus 1811 ~~---p~~~~---~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~----Pk-~----~dlw~~y~~le~k~gd~~~ar~lf 1875 (1924)
.. |...| ..++.++|.+++..|++++|+++|++|++.. -+ + ..+|. ++..+.+.+.+..|-.+|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~-la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ-LAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH-HHHHHHHhcccchHHHHH
Confidence 65 33333 3689999999999999999999999999865 22 2 23454 455667888999999999
Q ss_pred HHHHhc-----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000176 1876 ERAISL-----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922 (1924)
Q Consensus 1876 eral~~-----~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~ 1922 (1924)
++++.. ...|.-. ..+..........|+++.|..+-++++.+-+..
T Consensus 433 ~~~~~i~~~~g~~~~~~~-~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~ 483 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVT-YTYLNLAALYRAQGNYEAAEELEEKVLNAREQR 483 (508)
T ss_pred HHHHHHHHHhCCCCCchH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHc
Confidence 998862 1233333 567778888999999999999999988775543
No 160
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=98.81 E-value=1.3e-08 Score=94.16 Aligned_cols=68 Identities=38% Similarity=0.747 Sum_probs=63.6
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
|+++.|+|.++.+||+||+|.+ +..|++|++++++.++.++.+.|++||.|+++|+++|+ .+++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILP-GKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCC-CCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 7899999999999999999976 79999999999999888888899999999999999998 99999884
No 161
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.81 E-value=1.6e-06 Score=110.79 Aligned_cols=230 Identities=14% Similarity=0.125 Sum_probs=164.6
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000176 1669 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748 (1924)
Q Consensus 1669 ~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~ 1748 (1924)
..+|++...|..++....++|.++.||-.|.||++.-|.. ..+...++.|+.+.| +...|.+.|.++++.+|+
T Consensus 201 HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n-----~~~~~ers~L~~~~G--~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 201 HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN-----WELIYERSSLYQKTG--DLKRAMETFLQLLQLDPP 273 (895)
T ss_pred hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHhC--hHHHHHHHHHHHHhhCCc
Confidence 4578888889888888888888888988888888876642 345557777878888 458888888888888873
Q ss_pred H-------HHHH-----------------------------------HHHHHHHHhCChHHHHHHHHHHHH---------
Q 000176 1749 K-------KVHL-----------------------------------ALLGLYERTEQNKLADELLYKMIK--------- 1777 (1924)
Q Consensus 1749 ~-------~i~~-----------------------------------~l~~i~~~~gk~e~A~~~fe~~lk--------- 1777 (1924)
. .+|. -++.+|....+++.|.......+.
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 1 1111 111233333333333333322222
Q ss_pred ----------------------------------------------------h---cCCCHHHHHHHHHHHHhc-CHHHH
Q 000176 1778 ----------------------------------------------------K---FKHSCKVWLRRVQRLLKQ-QQEGV 1801 (1924)
Q Consensus 1778 ----------------------------------------------------~---~~~~~~vw~~~a~~l~~~-~~~~A 1801 (1924)
. ..+...+++..+..|+.. ++..|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A 433 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA 433 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 0 013355667777777777 88999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1802 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1802 ~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
..+|..++...+... .-+|...|.+|...|.+++|...|+++|...|.+.|+...++.++.++|++++|-..+++...-
T Consensus 434 l~~l~~i~~~~~~~~-~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 434 LRLLSPITNREGYQN-AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HHHHHHHhcCccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 999999887766554 6799999999999999999999999999999999999999999999999999999999885531
Q ss_pred C-------CCchhHHHHHHHHHHHHHHcCCHHH
Q 000176 1882 S-------LPPKKMKFLFKKYLEYEKSVGEEER 1907 (1924)
Q Consensus 1882 ~-------~~pk~~k~lw~~yl~~E~~~G~~~~ 1907 (1924)
+ -.+..+ .+-..+.+...+.|+.+.
T Consensus 513 D~~~~e~~a~~~e~-ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 513 DGRNAEACAWEPER-RILAHRCDILFQVGKREE 544 (895)
T ss_pred CccchhhccccHHH-HHHHHHHHHHHHhhhHHH
Confidence 1 122333 345666677777787765
No 162
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.
Probab=98.80 E-value=1.8e-08 Score=97.44 Aligned_cols=71 Identities=38% Similarity=0.743 Sum_probs=62.6
Q ss_pred CCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCcEEEEEEEEEecCCCeeEE
Q 000176 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKRRISL 1525 (1924)
Q Consensus 1457 ~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~-----------~~~~~~~~Gd~Vk~~Vl~id~e~~ri~l 1525 (1924)
+|+++.|+|++|.++|+||+|.+.+++|++|.+++++++.. .....|++||.|+++|+++|.++++|.|
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 48999999999999999999986579999999999876422 3457899999999999999999999999
Q ss_pred ec
Q 000176 1526 GM 1527 (1924)
Q Consensus 1526 sl 1527 (1924)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
No 163
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=98.80 E-value=7.8e-09 Score=135.48 Aligned_cols=79 Identities=32% Similarity=0.582 Sum_probs=72.5
Q ss_pred ccccCCCcEEE-EEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1452 LSNLHVGDIVI-GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1452 ~~~l~~G~~v~-G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
+.+.++|+++. |+|++|.+||+||+|.+ +++||||+|+|+|+++.++.+.|++||.|+|+|+++|. ++||.||+|..
T Consensus 748 ~~~~~vG~iy~~g~V~~I~~FGaFVeL~~-g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l 825 (891)
T PLN00207 748 TMVPTVGDIYRNCEIKSIAPYGAFVEIAP-GREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRAL 825 (891)
T ss_pred hcCcCCCcEEECcEEEEEeccEEEEEeCC-CCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEecc
Confidence 34678999995 69999999999999987 79999999999999999999999999999999999996 89999999986
Q ss_pred cc
Q 000176 1531 YF 1532 (1924)
Q Consensus 1531 ~~ 1532 (1924)
..
T Consensus 826 ~~ 827 (891)
T PLN00207 826 LP 827 (891)
T ss_pred cc
Confidence 33
No 164
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.80 E-value=4.9e-07 Score=106.01 Aligned_cols=188 Identities=11% Similarity=-0.005 Sum_probs=143.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000176 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1749 (1924)
Q Consensus 1671 ~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1749 (1924)
++.....|+..+..+++.++++.|...+++++...|.... ....|......+...+ +.+.|...|+++++..|..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~a~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY--AEQAQLDLAYAYYKSG--DYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHCcCCC
Confidence 3567778888888888999999999999999887764321 1235777777777778 4588999999999888753
Q ss_pred ---HHHHHHHHHHHHh--------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChH
Q 000176 1750 ---KVHLALLGLYERT--------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHI 1818 (1924)
Q Consensus 1750 ---~i~~~l~~i~~~~--------gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~ 1818 (1924)
..|+.++.++.+. +++++|.+.|++++..+|.+...|..+..... +...+ .
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~------~~~~~------------~ 166 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY------LRNRL------------A 166 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH------HHHHH------------H
Confidence 3577777777665 77889999999999998888776654433211 11100 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~---~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
......|.+++..|++++|...|++++..+|+. ..+|...+..+.+.|++++|..+|+.+..
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 223467888999999999999999999998864 46899999999999999999999888765
No 165
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.80 E-value=1.3e-07 Score=101.52 Aligned_cols=124 Identities=11% Similarity=-0.027 Sum_probs=111.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1736 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1736 ~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
+..|++|++..|.. |..++..+.+.|++++|...|++++...|.+..+|..++..+... ++++|...|++++...|.
T Consensus 13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56899999998864 677888999999999999999999999999999999999999999 999999999999999988
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
+ ...|..+|..+...|++++|+..|++++...|++...|........
T Consensus 91 ~--~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 H--PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred C--cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 7 4899999999999999999999999999999999999877665543
No 166
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.79 E-value=3.3e-07 Score=121.08 Aligned_cols=135 Identities=12% Similarity=0.121 Sum_probs=128.8
Q ss_pred cCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHH
Q 000176 1745 YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQ 1823 (1924)
Q Consensus 1745 ~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~ 1823 (1924)
|...-..+..++.+..+.|.+++|..++++++...|++..+|..++..+.+. ++++|...+++++...|.+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~--~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS--AREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC--HHHHHH
Confidence 3344589999999999999999999999999999999999999999999999 9999999999999999988 589999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1824 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1824 ~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
+|..+.+.|++++|..+|+++++..|+...+|..|+..+...|+.+.|...|++|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999984
No 167
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=98.77 E-value=3.3e-08 Score=94.45 Aligned_cols=72 Identities=25% Similarity=0.423 Sum_probs=66.8
Q ss_pred CCEEEEEEEEEeeceEEEEeC---CCcEEEEECccCCCccc-CCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccc
Q 000176 1368 NMIVQGYVKNVTSKGCFIMLS---RKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441 (1924)
Q Consensus 1368 G~~v~G~V~~v~~~G~fV~l~---~~v~g~v~~selsd~~~-~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~ 1441 (1924)
|+++.|.|+++.++|+||+|+ .+++|++|+++++|.+. .++.+.|++||.|+++|+++| ++++.+|+|....
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~~~ 76 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDVDQ 76 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEeccc
Confidence 789999999999999999998 46999999999999986 889899999999999999999 8999999998654
No 168
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=98.77 E-value=1.6e-08 Score=117.47 Aligned_cols=75 Identities=33% Similarity=0.640 Sum_probs=70.9
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecC-ceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
.++|++|.|+|++|.+||+||+|.+. ++.||+|+|++++.++.++.+.|++||.|.|+|+++|+++++|.||+|.
T Consensus 6 P~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~ 81 (262)
T PRK03987 6 PEEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKR 81 (262)
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEe
Confidence 36899999999999999999999753 7999999999999999999999999999999999999999999999987
No 169
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=98.76 E-value=2.8e-08 Score=92.77 Aligned_cols=72 Identities=42% Similarity=0.753 Sum_probs=67.2
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
++|+++.|+|.++.++|+||++.+ ++.|++|.+++++.+..++...|++||.|+++|++++++++++.||++
T Consensus 1 ~~G~~v~g~V~~v~~~g~~v~i~~-~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 1 EVGDVVEGTVTEITPFGAFVDLGN-GVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCCEEEEEEEEEEccEEEEEeCC-CCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 369999999999999999999976 799999999999988888888999999999999999999999999875
No 170
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=98.75 E-value=2.6e-08 Score=96.55 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=65.0
Q ss_pred ccCCCcEEEEEEEEeecc--eEEEEEecCceeEEeeccccCc---ccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1454 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSE---DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~--GvFV~l~~~~v~gl~h~sels~---~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
.+++|+++.|+|+++.+| |+||+|.+ +.+||+|+||++| .++.++.+.+++||.|.|+|++.....+...|+.+
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~-g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~ 82 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGL-GKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTN 82 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCC-CCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEE
Confidence 567999999999999997 99999986 7999999999999 66778889999999999999998776666666554
No 171
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.3e-06 Score=102.05 Aligned_cols=259 Identities=14% Similarity=0.079 Sum_probs=187.7
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhC-CCCHHHHHHHHHHH-HHcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 000176 1643 QEIRAAEERLLEKDAPRTPDEFERLVRSS-PNSSFVWIKYMAFM-LSMA-DVEKARSIAERALQTINIREENEKLNIWVA 1719 (1924)
Q Consensus 1643 ~~~~~~e~~~~~~~~p~a~~~ferll~~~-P~s~~~W~~y~~~~-~~~~-e~dkAr~v~eraL~~i~~~ee~ekl~lWia 1719 (1924)
.++...-+-+-+++.+.+++.+.-+-..+ ...+.+-.++...+ +|-| ++..|...++.|+...-+... ....
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~-----a~~n 495 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAA-----ALTN 495 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHH-----Hhhc
Confidence 34444444444566666666554333222 22233333444333 4444 788888888888864443221 1111
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C
Q 000176 1720 YFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1720 yl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~ 1797 (1924)
-.|.....| +.++|.+.|++|+..... .+..+..+..++..|+.++|++.|-++-.....+..+.+..+.+|.-. +
T Consensus 496 kgn~~f~ng--d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 496 KGNIAFANG--DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED 573 (840)
T ss_pred CCceeeecC--cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC
Confidence 222333446 669999999999876544 377788888889999999999999988887778999999999998888 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
...|.++|-++....|.+ +.+++++|.+|-+.|+-.+|...+=..-+.+|-+......++.+|+...-.+++...||+
T Consensus 574 ~aqaie~~~q~~slip~d--p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPND--PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHHHHHHHhcccCCCC--HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999887 589999999999999999998888888888898888766566777777778889999999
Q ss_pred HHhcCCCchhHHHHHHHHHH-HHHHcCCHHHHHHHHHH
Q 000176 1878 AISLSLPPKKMKFLFKKYLE-YEKSVGEEERIEYVKQK 1914 (1924)
Q Consensus 1878 al~~~~~pk~~k~lw~~yl~-~E~~~G~~~~~~~v~~r 1914 (1924)
|-- +.|...+ |...+. ..++.|+++.+..+|..
T Consensus 652 aal--iqp~~~k--wqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 652 AAL--IQPNQSK--WQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred HHh--cCccHHH--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 887 7777775 766654 46778898888877754
No 172
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.73 E-value=9e-07 Score=103.75 Aligned_cols=164 Identities=11% Similarity=0.044 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC---KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1824 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~---~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~-~~~~~~ 1824 (1924)
..++.++..+...++++.|...|++++..+|.++ ..|+..+..+... ++++|...|++++...|.+... .+|...
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 6788888888888899999999998888887664 5788888888888 8999999999999888876532 357777
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHH-----------------HHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1825 AILEFKN--------GVADRGRSMFEGILSEYPKRTDLWS-----------------IYLDQEIRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1825 A~le~~~--------g~~e~Ar~lfe~aL~~~Pk~~dlw~-----------------~y~~le~k~gd~~~ar~lferal 1879 (1924)
|..++.. |+++.|...|++++..+|++...|. ..++++++.|++..|...|++++
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 193 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV 193 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7777765 7788899999999999988765542 34677888999999999999999
Q ss_pred hcCCCch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1880 SLSLPPK---KMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1880 ~~~~~pk---~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
. ..|+ .. ..|..........|+.+++..+++...
T Consensus 194 ~--~~p~~~~~~-~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 194 E--NYPDTPATE-EALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred H--HCCCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 3332 23 567778888888999999888776543
No 173
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=98.72 E-value=3.6e-08 Score=91.26 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=64.2
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEee
Q 000176 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSl 830 (1924)
|+++.|.|.+++++|+||++.++..||+|.+++++.+...+...|++||.|.|+|+++|+ ++++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILPGKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCCCCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 678999999999999999999999999999999988888888899999999999999999 99999985
No 174
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=3.1e-07 Score=114.55 Aligned_cols=214 Identities=14% Similarity=0.101 Sum_probs=143.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1758 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i 1758 (1924)
..|+..+++.|-...|..+|+|.- .|-..+..+...| +..+|..+..+-++..|....|..++++
T Consensus 402 ~~laell~slGitksAl~I~Erle-------------mw~~vi~CY~~lg--~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE-------------MWDPVILCYLLLG--QHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH-------------HHHHHHHHHHHhc--ccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 567777777777777777766543 6777777777777 4577777777777744444666667776
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~A 1837 (1924)
..+..-|++|.++++..-.+ +...++...+.+ +++++...|++++..+|-. +..|+.++....+.+++..|
T Consensus 467 ~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHhhhHHH
Confidence 65555555555555443322 333344444445 7777777777777777666 46777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
...|-+++...|++...|+.+.-.+++.++..+|+..+.+|+. ...+.. .+|..|+-.-.+.|.++.|..+|.|-++
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK--cn~~~w-~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK--CNYQHW-QIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh--cCCCCC-eeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777776 443333 4677777777777777777777776655
Q ss_pred H
Q 000176 1918 Y 1918 (1924)
Q Consensus 1918 ~ 1918 (1924)
.
T Consensus 616 ~ 616 (777)
T KOG1128|consen 616 L 616 (777)
T ss_pred h
Confidence 4
No 175
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=9.2e-07 Score=110.51 Aligned_cols=186 Identities=11% Similarity=-0.036 Sum_probs=96.4
Q ss_pred CCchHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHH---HHHHHHHHcCCC
Q 000176 1657 APRTPDEFERLVRSSPNS---SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV---AYFNLENEYGNP 1730 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s---~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWi---ayl~le~~~g~~ 1730 (1924)
.+.+...|.+.....|.+ ...+.-.+..+...+++++|...+++++...|... ..|. .|..+....+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-----~a~~~~~~~~~~~~~~~-- 94 (355)
T cd05804 22 RPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-----LALKLHLGAFGLGDFSG-- 94 (355)
T ss_pred cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----HHHHHhHHHHHhccccc--
Confidence 444455666655554432 33444445555566666666666666666555322 1222 1222211122
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1808 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ra 1808 (1924)
....+.+.++.+....+.. ..+..++.++...|++++|...|++++...|.+..+|..++..+... ++++|...|+++
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~ 174 (355)
T cd05804 95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW 174 (355)
T ss_pred CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 1233333333311222221 33334455666666666666666666666666666666666666666 666666666666
Q ss_pred HHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1809 LLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1809 l~~~p~~~--~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
+...|... ....|..+|.++...|++++|..+|++++...|
T Consensus 175 l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 175 RDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 66554321 123455566666666666666666666654444
No 176
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=2.2e-06 Score=103.89 Aligned_cols=200 Identities=11% Similarity=0.006 Sum_probs=162.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HH
Q 000176 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KV 1751 (1924)
Q Consensus 1673 ~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i 1751 (1924)
+...+|--+.+.+...+..++|...++++++..|.. ..+|.....+....+. ..+++...++++++.+|.. .+
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~-----ytaW~~R~~iL~~L~~-~l~eeL~~~~~~i~~npknyqa 108 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGN-----YTVWHFRRLCLEALDA-DLEEELDFAEDVAEDNPKNYQI 108 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh-----HHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHCCcchHH
Confidence 333444444444556678899999999999876632 3588877776666663 2488999999999999875 89
Q ss_pred HHHHHHHHHHhCCh--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQN--KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~--e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
|.....++.+.++. +++.+.+++++...+.+..+|...+-.+... ++++|.+.+.++|+..|.+. .+|...+.+.
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~--sAW~~R~~vl 186 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN--SAWNQRYFVI 186 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch--hHHHHHHHHH
Confidence 99999988888874 7889999999999999999999999888888 99999999999999998885 7888888776
Q ss_pred HHc---CC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q 000176 1829 FKN---GV----ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1829 ~~~---g~----~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~----gd~~~ar~lferal~ 1880 (1924)
... |. .+++.....+++...|++..+|..+..++... +....|...+++++.
T Consensus 187 ~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 187 TRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 655 22 35788888899999999999999998888773 445668889999887
No 177
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=98.72 E-value=5.1e-08 Score=92.46 Aligned_cols=67 Identities=30% Similarity=0.585 Sum_probs=61.1
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
.+.++++|+++.|+|+++.+||+||++++ +..||+|.+++. +.|++||.++++|.++ .+++||.|++
T Consensus 10 ~~~~~~~G~~~~g~V~~i~~~G~fV~l~~-~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 10 TMEDLEVGKLYKGKVNGVAKYGVFVDLND-HVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred chhhCCCCCEEEEEEEeEecceEEEEECC-CcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 46789999999999999999999999987 699999999963 4589999999999999 7999999875
No 178
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.71 E-value=6.2e-06 Score=94.34 Aligned_cols=195 Identities=12% Similarity=0.057 Sum_probs=157.3
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.+....|...|..++..+|+++.+.++-+..|+..|.-.-|..-++|.|+.-| ++- -.-++..++.+..| ..+
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp---DF~--~ARiQRg~vllK~G--ele 123 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP---DFM--AARIQRGVVLLKQG--ELE 123 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc---cHH--HHHHHhchhhhhcc--cHH
Confidence 44477788899999999999999999999999999999999999999998766 322 34567778888899 459
Q ss_pred HHHHHHHHHHhcCCCH----HHHHHHHH------------HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q 000176 1734 AVVKVFQRALQYCDPK----KVHLALLG------------LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1796 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~----~i~~~l~~------------i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~- 1796 (1924)
.|..-|...++..|+. +.+..++. -+.-+|++..|.++...++...+-...++...+..|...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 9999999999998852 33333332 234568899999999999998888899999999999888
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1857 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~ 1857 (1924)
.+..|..-+..+-+...++ ...++..++++|..|+.+.+....+.+|+.+|+...-+..
T Consensus 204 e~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQDN--TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred cHHHHHHHHHHHHhccccc--hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 9999998888887766554 4889999999999999999999999999998886544333
No 179
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=98.71 E-value=5.1e-08 Score=91.04 Aligned_cols=72 Identities=32% Similarity=0.487 Sum_probs=67.9
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEee
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk 1437 (1924)
++|+++.|+|.++++.|+||.++.++.|++|.+++++.+..++...|++||.+.++|++++++++++.+|++
T Consensus 1 ~~G~~v~g~V~~v~~~g~~v~i~~~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 1 EVGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCCEEEEEEEEEEccEEEEEeCCCCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 369999999999999999999999999999999999998888888899999999999999998899999985
No 180
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=98.70 E-value=1.8e-08 Score=127.98 Aligned_cols=79 Identities=33% Similarity=0.653 Sum_probs=75.2
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.+.+|++|+++.|+|++|.+||+||.|+ ...+||+|+|++|+.++.++.+.+++||.|+++|++||..++||+|||+..
T Consensus 652 ~i~dLk~Gm~leg~Vrnv~~fgafVdIg-v~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Lsmr~~ 730 (780)
T COG2183 652 SITDLKPGMILEGTVRNVVDFGAFVDIG-VHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALSMRLD 730 (780)
T ss_pred hHhhccCCCEEEEEEEEeeeccceEEec-cccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeEeecc
Confidence 4679999999999999999999999996 488999999999999999999999999999999999999999999999874
No 181
>PHA02945 interferon resistance protein; Provisional
Probab=98.70 E-value=6.2e-08 Score=89.78 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=66.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCC--CcEEEEECccC--CCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccc
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~--~v~g~v~~sel--sd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~ 1440 (1924)
.+|+++-|+|+. .++|+||.|.. +.+||+|+|+. +..++++ ++.+ .||.+.|+|+.+|+.++.|.||||.-.
T Consensus 10 ~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V~ 85 (88)
T PHA02945 10 NVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 85 (88)
T ss_pred CCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEcc
Confidence 589999999999 99999999964 79999999965 9999999 8888 999999999999999999999999754
No 182
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.69 E-value=6.3e-07 Score=118.46 Aligned_cols=164 Identities=13% Similarity=0.050 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHH---HHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELL---YKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1826 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~f---e~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~ 1826 (1924)
++.++-.+..+++....+.+.+ ......|++..+++..++....+. .+++|..+++++++..|++ ..++..||.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--~~a~~~~a~ 128 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--SEAFILMLR 128 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--HHHHHHHHH
Confidence 3344444555555544444444 445567899999999999999999 9999999999999999988 599999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000176 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1827 le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~ 1906 (1924)
.+.+.+.+|+|+..++++|...|++......++..+.+.|++++|..+|++++. ..|+.. ..|..|....+..|+.+
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~-~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR--QHPEFE-NGYVGWAQSLTRRGALW 205 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcH-HHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999998 555656 58999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000176 1907 RIEYVKQKAMEYV 1919 (1924)
Q Consensus 1907 ~~~~v~~rAle~v 1919 (1924)
+|...|++|++..
T Consensus 206 ~A~~~~~~a~~~~ 218 (694)
T PRK15179 206 RARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
No 183
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.67 E-value=6.4e-08 Score=89.58 Aligned_cols=68 Identities=29% Similarity=0.475 Sum_probs=64.3
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LS 1435 (1924)
+|+++.|.|.++.++|+||+++ +++|++|.+++++.+..++.+.|++||.|+++|+++|++++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~-~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG-GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC-CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 4899999999999999999998 7999999999999888889899999999999999999999999876
No 184
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=1.9e-07 Score=116.45 Aligned_cols=199 Identities=13% Similarity=0.167 Sum_probs=168.7
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
.-+|...|||+ .+|-..+.||...|+..+|..+..|-++.-|. ..+|..++++-.. .
T Consensus 414 tksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d------~~lyc~LGDv~~d---------~ 470 (777)
T KOG1128|consen 414 TKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD------PRLYCLLGDVLHD---------P 470 (777)
T ss_pred HHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc------chhHHHhhhhccC---------h
Confidence 44566677775 78999999999999999999999999974442 2356666555322 2
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1737 KVFQRALQYCDPK--KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1737 ~vferAl~~~~~~--~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
..|++|..+-+.. .....++....+.++++++...|++.++.++-....|+.++...++. +++.|-..|.+++...|
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 3456666555443 34456666666789999999999999999999999999999999999 99999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1814 ~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.+. ..|.+++..|.+.++-.+|+..+..+++.+-+++.+|.+|+-+..+.|.++.|...|.|.+.
T Consensus 551 d~~--eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 551 DNA--EAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred Cch--hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 884 99999999999999999999999999999988899999999999999999999999999987
No 185
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=98.66 E-value=3.1e-08 Score=125.83 Aligned_cols=86 Identities=31% Similarity=0.596 Sum_probs=81.1
Q ss_pred cchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000176 1356 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435 (1924)
Q Consensus 1356 ~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LS 1435 (1924)
+.....+.+|++|+++.|.|.++.++|+||.||-+.+|+||+|.+++.|+++|.+.+++||.|+++|+++|...+||.||
T Consensus 647 ~~~v~~i~dLk~Gm~leg~Vrnv~~fgafVdIgv~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Ls 726 (780)
T COG2183 647 DEGVESITDLKPGMILEGTVRNVVDFGAFVDIGVHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALS 726 (780)
T ss_pred hhhhhhHhhccCCCEEEEEEEEeeeccceEEeccccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeE
Confidence 34466778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccc
Q 000176 1436 LKTSDS 1441 (1924)
Q Consensus 1436 lk~~~~ 1441 (1924)
||....
T Consensus 727 mr~~~~ 732 (780)
T COG2183 727 MRLDEE 732 (780)
T ss_pred eeccCC
Confidence 998665
No 186
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=3.5e-07 Score=103.62 Aligned_cols=117 Identities=11% Similarity=0.142 Sum_probs=77.1
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH-HHHcCC--HHHH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL-EFKNGV--ADRG 1837 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l-e~~~g~--~e~A 1837 (1924)
.++.+++...|++++...|++...|..++..+... ++++|...|++|+...|.+ ..++..+|.. ++..|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~--~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN--AELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCCCcHHH
Confidence 34445666666666666666666666666666666 6666666677666666655 4666666664 345555 4667
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+.+|+++++..|++...|+.++..++..|++++|...|++++.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777776666666666666666777777777777666
No 187
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=3.6e-07 Score=103.61 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH-Hhc-C--HHHHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL-LKQ-Q--QEGVQAVV 1805 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l-~~~-~--~~~A~~l~ 1805 (1924)
+.+.+...++++++.+|.+ +.|..++.+|...|++++|...|+++++..|++..+|..|+..+ ... + .++|+++|
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4577888999999999875 99999999999999999999999999999999999999999976 454 4 69999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1806 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1806 ~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
+++++..|.+ +.++..+|..+++.|++++|...|+++++..|.+.+
T Consensus 134 ~~al~~dP~~--~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 134 DKALALDANE--VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHhCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999999987 589999999999999999999999999999987543
No 188
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=98.65 E-value=1.1e-07 Score=106.64 Aligned_cols=96 Identities=20% Similarity=0.415 Sum_probs=79.1
Q ss_pred EEEeCCCCEEEEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEec---------CceeEEeeccccCc
Q 000176 1423 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN---------TNLVGLCHVSELSE 1493 (1924)
Q Consensus 1423 l~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~---------~~v~gl~h~sels~ 1493 (1924)
+++|.++++|.+. ||.. ....+++|++|.|+|+++.++|+||+|.. .++.|++|++++++
T Consensus 41 ~~id~~~~~Isv~-------P~~~----~~~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~G~l~~s~i~~ 109 (189)
T PRK09521 41 VFIDDINRKISVI-------PFKK----TPPLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKLAYIHISQVSD 109 (189)
T ss_pred EEEcCCCCEEEEe-------cCcC----CCCCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCceeeEEhhHcCh
Confidence 3557677777762 3322 13467899999999999999999999952 26889999999999
Q ss_pred ccccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1494 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1494 ~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
.+..++.+.|++||.|+|+|++++ +++.||+|...+
T Consensus 110 ~~~~~~~~~~~~GD~V~akV~~i~---~~i~LS~k~~~l 145 (189)
T PRK09521 110 GYVESLTDAFKIGDIVRAKVISYT---DPLQLSTKGKDL 145 (189)
T ss_pred hhhhhHHhccCCCCEEEEEEEecC---CcEEEEEecCCc
Confidence 988889999999999999999998 799999987533
No 189
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.65 E-value=6.7e-08 Score=89.97 Aligned_cols=63 Identities=27% Similarity=0.468 Sum_probs=57.8
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccCccc--ccCcccccCCCcEEEEEEEEEecCCC
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKR 1521 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~--~~~~~~~~~~Gd~Vk~~Vl~id~e~~ 1521 (1924)
|++|.|+|+++.++|+||+|.+ +++|++|++++++.+ ..++.+.|++||.|+|+|+++|.++.
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~-~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~~ 65 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLAD-NVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAKT 65 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCC-CcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCccc
Confidence 7899999999999999999976 899999999999884 77888999999999999999997554
No 190
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.65 E-value=6.8e-08 Score=94.00 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=67.3
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCC----cccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD----GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd----~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~ 1440 (1924)
.++|++|.|.|.++.++|+||.++.+.+|++|++++++ .+..+..+.|++||.+.|+|++++++ +++.||++...
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~~ 82 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSLK 82 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCccc
Confidence 46999999999999999999999999999999999996 44566677899999999999999975 99999998743
No 191
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.64 E-value=2.3e-06 Score=115.28 Aligned_cols=198 Identities=10% Similarity=0.005 Sum_probs=161.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-
Q 000176 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP- 1748 (1924)
Q Consensus 1670 ~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~- 1748 (1924)
..|+.+..-...+-...+.|+++.|+..++++++..|.... .++ .|+.+....| ..++|...+++|+...+.
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~----av~-dll~l~~~~G--~~~~A~~~~eka~~p~n~~ 101 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG----QVD-DWLQIAGWAG--RDQEVIDVYERYQSSMNIS 101 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh----hHH-HHHHHHHHcC--CcHHHHHHHHHhccCCCCC
Confidence 45777777777777778999999999999999988774310 123 6666666778 459999999999932221
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
......++.+|...|++++|.++|+++++..|+++.++..++..+.+. +.++|.+.+++++...|... .+...+.+
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~---~~l~layL 178 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ---NYMTLSYL 178 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH---HHHHHHHH
Confidence 355556688999999999999999999999999999999888888888 99999999999999998752 33555666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1828 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1828 e~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
+...++..+|...|++++...|.+.+++..|...+.+.|-...|..+..+
T Consensus 179 ~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 66677776799999999999999999999999999999988887776664
No 192
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=98.64 E-value=5.2e-08 Score=127.90 Aligned_cols=82 Identities=16% Similarity=0.313 Sum_probs=76.9
Q ss_pred cCCCCCEEE-EEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1364 DLSPNMIVQ-GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1364 ~lk~G~~v~-G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
+.++|+++. |.|++|.++|+||+|.++++|+||+|+|+|.++.++.+.|++||.|+++|+++|+ .+||.||+|....+
T Consensus 750 ~~~vG~iy~~g~V~~I~~FGaFVeL~~g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l~~~ 828 (891)
T PLN00207 750 VPTVGDIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRALLPE 828 (891)
T ss_pred CcCCCcEEECcEEEEEeccEEEEEeCCCCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEeccccC
Confidence 468999996 6999999999999999999999999999999999999999999999999999996 89999999999888
Q ss_pred ccch
Q 000176 1443 TASQ 1446 (1924)
Q Consensus 1443 ~~~~ 1446 (1924)
||..
T Consensus 829 Pw~~ 832 (891)
T PLN00207 829 ANSE 832 (891)
T ss_pred chhh
Confidence 8764
No 193
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.64 E-value=9.4e-08 Score=92.05 Aligned_cols=75 Identities=21% Similarity=0.277 Sum_probs=69.0
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
++||+|.|+|+++.+.|++|.+.. ...|++|.++++..+..++.+.|++||.+.|+|+++|.+ +++.||++...+
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~-~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~~~ 79 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILS-RGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADNEL 79 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCC-CceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCCCC
Confidence 789999999999999999999964 899999999999888888899999999999999999986 999999987543
No 194
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.1e-06 Score=97.22 Aligned_cols=229 Identities=14% Similarity=0.113 Sum_probs=143.9
Q ss_pred hcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcch----------------------
Q 000176 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE---------------------- 1710 (1924)
Q Consensus 1653 ~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee---------------------- 1710 (1924)
..++..++..-||+....+|.....--.|+-.+-+.|+++....+-.+.+....+..+
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 4677888888888888888887777777777666666666655555555433222110
Q ss_pred -------hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC
Q 000176 1711 -------NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1782 (1924)
Q Consensus 1711 -------~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~ 1782 (1924)
.....-++.-.++..+.+ +.++|.-.|+.|....|.. ..|.-+...|...+++.+|.-+-..+.+.++++
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~--R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s 401 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALE--RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS 401 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhcc--chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc
Confidence 000123344445555555 3366666666666666543 666666666666666666666666666666666
Q ss_pred HHHHHHHH-HHHHhc--CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000176 1783 CKVWLRRV-QRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859 (1924)
Q Consensus 1783 ~~vw~~~a-~~l~~~--~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~ 1859 (1924)
......++ ..++.. --++|..+++++|...|.. +.+....|.+....|.++.+..++|+.|..+|+. .+...++
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lg 478 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY--TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLG 478 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc--HHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHH
Confidence 66665553 333333 5566777777777777666 4666677777777777777777777777777664 4566667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1860 DQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1860 ~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
++....+.++.|...|..|+. +.|++-
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 777777777777777777776 444443
No 195
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.63 E-value=1.1e-05 Score=100.70 Aligned_cols=203 Identities=13% Similarity=0.041 Sum_probs=95.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000176 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1749 (1924)
Q Consensus 1671 ~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1749 (1924)
+|++...|...+.++...++.+.|...+.++.+..+.+.+ ....+.-........+ +.++|.+.+++++...|..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT--ERERAHVEALSAWIAG--DLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcH
Confidence 4555555555555555555555555555555544442211 1112222223333444 3355555555555555543
Q ss_pred HHHH---HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1750 KVHL---ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1750 ~i~~---~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
..|. .+.......+....+.+.+......++.....+..++..+..+ ++++|...|++++...|.+. .++..+|
T Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~--~~~~~la 155 (355)
T cd05804 78 LALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA--WAVHAVA 155 (355)
T ss_pred HHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc--HHHHHHH
Confidence 2222 1111112223333333333332222233333334444455555 55555555555555555542 4455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk~----~dlw~~y~~le~k~gd~~~ar~lferal 1879 (1924)
.+++..|++++|+..|++++...|.. .+.|..++.++...|++++|..+|++++
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 55555555555555555555554422 1234455555555555555555555554
No 196
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.62 E-value=1.7e-06 Score=109.14 Aligned_cols=225 Identities=15% Similarity=0.110 Sum_probs=174.2
Q ss_pred cCCCCchHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CcchhhH-HHHHHHHHH
Q 000176 1654 EKDAPRTPDEFERLVRS--------SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN--IREENEK-LNIWVAYFN 1722 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~--------~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~--~~ee~ek-l~lWiayl~ 1722 (1924)
.++.+.|...|++++.. .|.-...-..++.+|..++++++|..+|++||...- +.++.+. ......+..
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 35588899999999876 566556666789999999999999999999996321 1111111 134444555
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCC------H---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC--------CCHHH
Q 000176 1723 LENEYGNPPEEAVVKVFQRALQYCDP------K---KVHLALLGLYERTEQNKLADELLYKMIKKFK--------HSCKV 1785 (1924)
Q Consensus 1723 le~~~g~~~~e~a~~vferAl~~~~~------~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~--------~~~~v 1785 (1924)
++...| ..++|+..++||+..... . ..+..++.++...+++++|..+|+++++.+. .-..+
T Consensus 292 ly~~~G--Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~ 369 (508)
T KOG1840|consen 292 LYYKQG--KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKI 369 (508)
T ss_pred HHhccC--ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 556677 459999999999976422 1 6677778889999999999999999998763 23678
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhCCC---CCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Q 000176 1786 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPR---HKH---IKFISQTAILEFKNGVADRGRSMFEGILSE-------YPKR 1851 (1924)
Q Consensus 1786 w~~~a~~l~~~-~~~~A~~l~~ral~~~p~---~~~---~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~-------~Pk~ 1851 (1924)
+.+++..++.+ ++++|+++|+.|++.... ..+ -..+..+|..+.+.+.++.|-.+|+.+... +|+-
T Consensus 370 ~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~ 449 (508)
T KOG1840|consen 370 YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCch
Confidence 89999999999 999999999999987622 111 145667788888999999899999888654 3555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1852 TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1852 ~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
...+..++.+|.+.|+++.|.++.++++.
T Consensus 450 ~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 66788999999999999999999999985
No 197
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.60 E-value=1e-06 Score=93.62 Aligned_cols=117 Identities=10% Similarity=-0.029 Sum_probs=88.2
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
+.|++++...|.. ...+.++..+...+++++|.+.|++++..++.++.+|..++.++... ++++|...|++++...|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567777777654 66777777777778888888888887777777778888888777777 777888888887777766
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw 1855 (1924)
. ...|..+|.++...|++++|...|+++++..|++...+
T Consensus 84 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D--PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 5 47777777777777888888888888887777766644
No 198
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=7e-06 Score=91.35 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=105.5
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH
Q 000176 1756 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1834 (1924)
Q Consensus 1756 ~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~ 1834 (1924)
+-.....++...|...++++...||.+..+-..+|.++... .+++|.++|++.|.-+|.+. -++.+-..+...+|..
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~--v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT--VIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh--HHHHHHHHHHHHcCCc
Confidence 33444567777777777777777777777777777766666 77777777777777777664 3333444444456666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcC---CHHHHHHH
Q 000176 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG---EEERIEYV 1911 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G---~~~~~~~v 1911 (1924)
-.|...+...|..+|.+.++|..++.+|+..|++++|.-+||.++- ..|-.. .+|.+|.+..--.| +.+.++.+
T Consensus 137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~-l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNP-LYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcH-HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6777777777777777777777777777777777777777777776 555555 56777776533333 45566777
Q ss_pred HHHHHHHH
Q 000176 1912 KQKAMEYV 1919 (1924)
Q Consensus 1912 ~~rAle~v 1919 (1924)
|++|++.-
T Consensus 214 y~~alkl~ 221 (289)
T KOG3060|consen 214 YERALKLN 221 (289)
T ss_pred HHHHHHhC
Confidence 77776643
No 199
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.59 E-value=1e-06 Score=94.76 Aligned_cols=117 Identities=9% Similarity=-0.054 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1768 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1768 A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~ 1846 (1924)
-..+|++++... +..|..++..+... ++++|...|++++...|.+ ..+|..+|..+...|++++|...|++++.
T Consensus 12 ~~~~~~~al~~~---p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVD---PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWS--WRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 357888888864 44577888888888 9999999999999999987 59999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000176 1847 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892 (1924)
Q Consensus 1847 ~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw 1892 (1924)
..|.+.+.|..++..+...|+++.|+..|++++. +.|... ..|
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~-~~~ 129 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADA-SWS 129 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHH
Confidence 9999999999999999999999999999999999 778777 345
No 200
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=98.59 E-value=9.3e-08 Score=126.80 Aligned_cols=76 Identities=36% Similarity=0.687 Sum_probs=71.8
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
..++++|+++.|+|++|.+||+||+|.+ +.+||+|+|++++.++.++.+.|++||.|+|+|+++|++ +||.||+|.
T Consensus 616 ~~~~~vG~v~~G~V~~I~~fGafVei~~-~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~ 691 (693)
T PRK11824 616 TAEPEVGEIYEGKVVRIVDFGAFVEILP-GKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKA 691 (693)
T ss_pred cccCcCCeEEEEEEEEEECCeEEEEECC-CCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEe
Confidence 3568999999999999999999999986 899999999999999999999999999999999999987 999999986
No 201
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=7.2e-08 Score=120.51 Aligned_cols=104 Identities=25% Similarity=0.534 Sum_probs=85.4
Q ss_pred EEEeCCCCEEEEEeecccccccch-hccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCccc
Q 000176 1423 LSVEPLSKRVEVTLKTSDSRTASQ-SEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1501 (1924)
Q Consensus 1423 l~vd~e~~ri~LSlk~~~~~~~~~-~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~ 1501 (1924)
+.++ +++.+.++-.......... ........+.+|+++.|+|+++.+||+||+|.+ +-.||||+|++++.+++...+
T Consensus 585 Idie-ddGtv~i~~s~~~~~~~ak~~I~~i~~e~evg~iy~G~V~ri~~fGaFv~l~~-gkdgl~hiS~~~~~rv~kv~d 662 (692)
T COG1185 585 IDIE-DDGTVKIAASDGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVELLP-GKDGLVHISQLAKERVEKVED 662 (692)
T ss_pred EEec-CCCcEEEEecchHHHHHHHHHHHHHHhhcccccEEEEEEEEEeecceEEEecC-CcceeEEehhhhhhhhhcccc
Confidence 4555 6777777776543211111 111125789999999999999999999999988 899999999999999999999
Q ss_pred ccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1502 IYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1502 ~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
.+++||.|+++|+.+| +++|+.||+|.
T Consensus 663 vlk~Gd~v~Vkv~~iD-~~Gri~ls~~~ 689 (692)
T COG1185 663 VLKEGDEVKVKVIEID-KQGRIRLSIKA 689 (692)
T ss_pred eeecCceEEEEEeeec-ccCCccceehh
Confidence 9999999999999999 68999999986
No 202
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=98.56 E-value=2.1e-07 Score=90.20 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=66.1
Q ss_pred cCCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEECccCCC---cccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeec
Q 000176 1364 DLSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSD---GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438 (1924)
Q Consensus 1364 ~lk~G~~v~G~V~~v~~~--G~fV~l~~~v~g~v~~selsd---~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~ 1438 (1924)
.+++|+++.|.|+++.++ |+||+|+++.+||+|+++++| .++.++.+.|++||.|.|+|+......+...||.+-
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~~ 83 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGLGKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTNI 83 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCCCCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEEE
Confidence 367999999999999996 999999999999999999999 567788889999999999999987767766666654
No 203
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.
Probab=98.56 E-value=2.7e-07 Score=89.18 Aligned_cols=70 Identities=30% Similarity=0.448 Sum_probs=62.3
Q ss_pred CCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccC-----------CCCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~-~v~g~v~~selsd~~~~-----------~~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
+|+++.|.|++++++|+||+|++ +++|++|++++++.+.. .+...|++||.|+++|+++|.+++++.+
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 38899999999999999999998 89999999999976421 3457899999999999999999999999
Q ss_pred Ee
Q 000176 1435 TL 1436 (1924)
Q Consensus 1435 Sl 1436 (1924)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
No 204
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1.2e-05 Score=89.53 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=156.9
Q ss_pred CCchHHHHHHHHHhCCC---CHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC
Q 000176 1657 APRTPDEFERLVRSSPN---SSFVWIKYMAFM---LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1730 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~---s~~~W~~y~~~~---~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~ 1730 (1924)
.++-...++..+...+. -.+.|.-|=+.. +..++.+-|...+.+....+|.+. .+-.-+.-+....+.+
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-----RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK-----RVGKLKAMLLEATGNY 102 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-----hHHHHHHHHHHHhhch
Confidence 55666677777755543 356776665444 567899999999999999998654 2444455555666744
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1808 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ra 1808 (1924)
+.|.++|++.++-+|.+ -+|-.-+.+....|+.-+|.+.....+++|..+.++|..++.+|+.. ++++|.-.|+++
T Consensus 103 --~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 --KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred --hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88999999999998876 67778888888899999999999999999999999999999999999 999999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHH
Q 000176 1809 LLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKRTDLWSI 1857 (1924)
Q Consensus 1809 l~~~p~~~~~~~~~~~A~le~~~g---~~e~Ar~lfe~aL~~~Pk~~dlw~~ 1857 (1924)
+-..|.. +-.+.+||.++|..| +++-||++|+++|+..|++...|+-
T Consensus 181 ll~~P~n--~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 181 LLIQPFN--PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 9998877 478899999998776 6789999999999999988887764
No 205
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=6.4e-08 Score=107.55 Aligned_cols=75 Identities=27% Similarity=0.393 Sum_probs=71.5
Q ss_pred CCCEEEEEEEEEecCeEEEEE--CCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 761 PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f--~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
+|+.+.|+|++|.+||+||.+ |+|+.||+|.|+++...+.++.+++++||.|.|+|+++|+.++-+-||||....
T Consensus 11 eGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkrV~~ 87 (269)
T COG1093 11 EGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKRVTE 87 (269)
T ss_pred CCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhhCCH
Confidence 599999999999999999999 689999999999999999999999999999999999999999999999998753
No 206
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=9.3e-06 Score=102.95 Aligned_cols=75 Identities=21% Similarity=0.047 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI-RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~-k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
.-|..|..+++..|++-+-..++++++..++-..++|..|..+.- .++-.+++-..+-|++. .+|.-. .+|++|+
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R--~cp~tg-dL~~ral 388 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVR--SCPWTG-DLWKRAL 388 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhc--CCchHH-HHHHHHH
Confidence 455555555555555555555555555555555555555544332 22333444455555554 344333 5777776
No 207
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.54 E-value=2.3e-07 Score=86.34 Aligned_cols=63 Identities=21% Similarity=0.355 Sum_probs=58.5
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc--cCCCCccCCCCcEEEEEEEEEeCCCC
Q 000176 1368 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLSK 1430 (1924)
Q Consensus 1368 G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~--~~~~~~~f~~G~~V~~kVl~vd~e~~ 1430 (1924)
|++|.|.|+++.++|+||.|+.+++|++|++++++.| ..++.+.|++||.|+|+|+++|.++.
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~~ 65 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLADNVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAKT 65 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCCCcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCccc
Confidence 7899999999999999999999999999999999986 78888899999999999999996543
No 208
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.53 E-value=1.6e-05 Score=100.40 Aligned_cols=250 Identities=16% Similarity=0.114 Sum_probs=175.9
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000176 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1739 (1924)
Q Consensus 1660 a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vf 1739 (1924)
+...+|+++..+|+|+.+-+.++-.|..+.+++.|.....++++..+-. ....|.-+.-+...++ +...|..+.
T Consensus 463 slqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~----~~~~whLLALvlSa~k--r~~~Al~vv 536 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGD----SAKAWHLLALVLSAQK--RLKEALDVV 536 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHhhhh--hhHHHHHHH
Confidence 4567888888899999888888888888889999999999999754432 2456877777666666 447777777
Q ss_pred HHHHhcCCCH----------------------------HHHHHHHHHH----------------HHhCChHHHHHHHHHH
Q 000176 1740 QRALQYCDPK----------------------------KVHLALLGLY----------------ERTEQNKLADELLYKM 1775 (1924)
Q Consensus 1740 erAl~~~~~~----------------------------~i~~~l~~i~----------------~~~gk~e~A~~~fe~~ 1775 (1924)
.-|+...+.+ .+|.+.-.+. ....+.-+|...+.++
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 7777665441 1122000000 0011222333333322
Q ss_pred HHh-------c------C-------------CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1776 IKK-------F------K-------------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1776 lk~-------~------~-------------~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
.+. + | ...++|+..+..+... ..++|+..+.+|-+.+|.. ...|..-|..+
T Consensus 617 s~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~--~~~~~~~G~~~ 694 (799)
T KOG4162|consen 617 SSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS--ASVYYLRGLLL 694 (799)
T ss_pred HHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh--HHHHHHhhHHH
Confidence 211 0 0 0145788888888877 8888888888888887766 47888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH--HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR--GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar--~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~ 1906 (1924)
...|..++|...|-.++..+|+........+.++.+.|+..-|. .++..|+. +.|.+. ..|.......++.|+.+
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~-eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNH-EAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCH-HHHHHHHHHHHHccchH
Confidence 88888888888888888888888888888888888888655444 48888888 777777 58888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 000176 1907 RIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1907 ~~~~v~~rAle~v~ 1920 (1924)
.|-.+|+-|+++=.
T Consensus 772 ~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 772 QAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHhhcc
Confidence 88888888887643
No 209
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=6.4e-06 Score=96.42 Aligned_cols=211 Identities=14% Similarity=0.131 Sum_probs=128.8
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH---HcCCCCHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN---EYGNPPEE 1733 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~---~~g~~~~e 1733 (1924)
..++...-+.++..+..++.+..+-.......|++++|.+.|..||..... --.++.|+-+ .+| ..+
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas--------c~ealfniglt~e~~~--~ld 541 (840)
T KOG2003|consen 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS--------CTEALFNIGLTAEALG--NLD 541 (840)
T ss_pred hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH--------HHHHHHHhcccHHHhc--CHH
Confidence 555555566666666666666666666666677777777777777743221 1223333322 334 346
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~-~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
+|.+.|-+.-... +.-++...++++|+...+...|.++|.++....|.++.+...++.+|-+. +-..|.+.+-..-..
T Consensus 542 eald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 542 EALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 6666665543332 22367777777777777777777777777777777777777777766666 666666666666666
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHh
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY-LDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y-~~le~k~gd~~~ar~lferal~ 1880 (1924)
+|.+ +.+.--+|.+|....-.|.|..+||++--..|+.. -|..+ +....+.|++.+|..+|...-.
T Consensus 622 fp~n--ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~-kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 622 FPCN--IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS-KWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred cCcc--hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6665 34544455555555556777777777766666543 34333 3344566777777777766544
No 210
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=98.52 E-value=2.6e-07 Score=107.56 Aligned_cols=77 Identities=23% Similarity=0.428 Sum_probs=72.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC--CcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~--~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~ 1441 (1924)
.++|++|.|.|+++.++|+||+|.. +++|++|++++++.++.++.+.|++||.|.|+|+++|+++++|.||+|....
T Consensus 6 P~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~v~~ 84 (262)
T PRK03987 6 PEEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKRVNE 84 (262)
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEeccc
Confidence 3689999999999999999999975 7999999999999999999999999999999999999999999999997654
No 211
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.52 E-value=3.3e-07 Score=88.27 Aligned_cols=74 Identities=20% Similarity=0.178 Sum_probs=69.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccc
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~ 1440 (1924)
++|++|.|+|+++.+.|++|+++...+|++|+++++..+..++.+.|++||.+.|+|++++.+ +++.||++...
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~~ 78 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILSRGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADNE 78 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCCCceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCCC
Confidence 689999999999999999999999999999999999888888888999999999999999976 89999998743
No 212
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=98.52 E-value=4.7e-07 Score=85.91 Aligned_cols=71 Identities=24% Similarity=0.337 Sum_probs=63.7
Q ss_pred hHhhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEE
Q 000176 575 AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSF 654 (1924)
Q Consensus 575 ~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~ 654 (1924)
|++..+.+.+.|+.+.|+|+++.++|+||++.++..||+|.+++. ..|++||.++|+|.++ .+++++.+|+
T Consensus 6 ~~~~~~~~~~~G~~~~g~V~~i~~~G~fV~l~~~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 6 DPACTMEDLEVGKLYKGKVNGVAKYGVFVDLNDHVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred ccccchhhCCCCCEEEEEEEeEecceEEEEECCCcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 455667778899999999999999999999999999999999974 4599999999999999 8899999875
No 213
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=98.50 E-value=2.4e-07 Score=84.52 Aligned_cols=65 Identities=40% Similarity=0.798 Sum_probs=60.0
Q ss_pred EEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEe
Q 000176 1461 VIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1526 (1924)
Q Consensus 1461 v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls 1526 (1924)
+.|+|+++.++|+||.+.+ ++.|++|.+++++.+..++...|++||.|+|+|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~-~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELED-GVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecC-CCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 4799999999999999975 7999999999999888788889999999999999999999998875
No 214
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.5e-05 Score=93.40 Aligned_cols=196 Identities=10% Similarity=0.043 Sum_probs=161.9
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
+..|-..-++.+..+|++...++.-+..+.+.+..+.|.-.|+.|...-|+ ++..+..++.-++.++ ...+|.
T Consensus 316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-----rL~~Y~GL~hsYLA~~--~~kEA~ 388 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-----RLEIYRGLFHSYLAQK--RFKEAN 388 (564)
T ss_pred HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-----hHHHHHHHHHHHHhhc--hHHHHH
Confidence 444555556777889999999999999999999999999999999987776 4668888888889999 568888
Q ss_pred HHHHHHHhcCCCH-HHHHHHH-H-HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1737 KVFQRALQYCDPK-KVHLALL-G-LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~-~-i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
.....+.+..+.. .....++ . .+...--.++|...|++.++..|....+-...+..+... .+..+..+++++|..+
T Consensus 389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 8888888887764 3333332 2 223344468999999999999999999999999999888 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
|+. .+...+|++....+.+..|.+.|..+|+.+|++.....-+-.+|
T Consensus 469 ~D~---~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 469 PDV---NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred ccc---HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 876 78999999999999999999999999999999866554443333
No 215
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.47 E-value=2.7e-06 Score=90.29 Aligned_cols=115 Identities=10% Similarity=-0.015 Sum_probs=106.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000176 1770 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1770 ~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
+.|++++...|.+....+.++..++.. ++++|...|++++...|.. ..+|..+|.+++..|++++|..+|++++...
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468889988888888899999999999 9999999999999999876 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1849 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1849 Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
|++.+.|..++.++...|++++|...|++++. +.|+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 119 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENP 119 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccc
Confidence 99999999999999999999999999999999 555544
No 216
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.47 E-value=0.00024 Score=84.36 Aligned_cols=253 Identities=16% Similarity=0.126 Sum_probs=178.9
Q ss_pred HhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC
Q 000176 1652 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1731 (1924)
Q Consensus 1652 ~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~ 1731 (1924)
+..++.+++.....|.=...+.....++--+...-+.|+.++|-....++-+.-+... +-+-+....+....+++
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~----l~v~ltrarlll~~~d~- 169 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT----LAVELTRARLLLNRRDY- 169 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch----HHHHHHHHHHHHhCCCc-
Confidence 4455666664433333223344445555555556688999999999999986544322 55677777888888844
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhc-------------------------------
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKF------------------------------- 1779 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~------------------------------- 1779 (1924)
+.|+....+++...|.. .+..-...+|.+.|.+.....+..++.+..
T Consensus 170 -~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 170 -PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred -hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 89999999999988864 555555666777776666655555544321
Q ss_pred -----------CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000176 1780 -----------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE 1847 (1924)
Q Consensus 1780 -----------~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~ 1847 (1924)
+.++.+-..|+..+.+. ..++|.++.+.+++..-+. .+...+..+ +-++++.-....|+.++.
T Consensus 249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~---~L~~~~~~l--~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP---RLCRLIPRL--RPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh---hHHHHHhhc--CCCCchHHHHHHHHHHHh
Confidence 13455666777777777 8888888888888765332 333333322 456777778888888999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1848 YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1848 ~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
.|.+..+|+.++.++++++.+.+|...|+.++. ..|... -|....+...+.|+.+.+..+++.|+-..
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~--~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSAS--DYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChh--hHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998 444433 35556666677999999999999998544
No 217
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=98.47 E-value=2.5e-07 Score=119.18 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=66.0
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccC----cccccCcccCCCCCCEEEEEEEEeeCCCCeEEEe
Q 000176 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV----DGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s----~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lS 829 (1924)
+.++|+++.|.|++|++||+||++.+|+.||+|.|+++ +.++.++.+.|++||.|+|+|+++|. ++|+.|+
T Consensus 644 ~~~vG~i~~GkV~~I~dfGaFVel~~G~eGLvHISeisdls~~~rv~~~~dv~kvGd~V~VKVl~ID~-~gKI~L~ 718 (719)
T TIGR02696 644 MPEVGERFLGTVVKTTAFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLSVGQKIQVEIADIDD-RGKLSLV 718 (719)
T ss_pred cCCCCCEEEEEEEEEECceEEEEecCCceEEEEhhhccccccccCcCCHHHcCCCCCEEEEEEEEECC-CCCeeec
Confidence 47899999999999999999999999999999999995 47889999999999999999999995 7899886
No 218
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core.
Probab=98.45 E-value=4.8e-07 Score=90.42 Aligned_cols=72 Identities=25% Similarity=0.551 Sum_probs=63.1
Q ss_pred cEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccC-----------cccccCCCcEEEEEEEEEecCC-----Ce
Q 000176 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-----------IETIYRAGEKVKVKILKVDKEK-----RR 1522 (1924)
Q Consensus 1459 ~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~-----------~~~~~~~Gd~Vk~~Vl~id~e~-----~r 1522 (1924)
+++.|+|+++.++|+||+|. +++|++|++++++++... ....|++||.|+++|.++|.+. ++
T Consensus 1 ~vv~g~V~~i~~~GifV~l~--~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~ 78 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG--PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESK 78 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc--CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCce
Confidence 47899999999999999996 499999999999876543 3478999999999999999874 58
Q ss_pred eEEecccccc
Q 000176 1523 ISLGMKSSYF 1532 (1924)
Q Consensus 1523 i~lslK~s~~ 1532 (1924)
|.||+|..++
T Consensus 79 i~ls~k~~~~ 88 (99)
T cd04460 79 IGLTMRQPGL 88 (99)
T ss_pred EEEEEecCCC
Confidence 9999999776
No 219
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=98.45 E-value=4.1e-07 Score=83.02 Aligned_cols=65 Identities=34% Similarity=0.581 Sum_probs=61.0
Q ss_pred EEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000176 1371 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1435 (1924)
Q Consensus 1371 v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LS 1435 (1924)
+.|+|.++.+.|+||+++.+.+|++|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecCCCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 47999999999999999999999999999999988888889999999999999999999998875
No 220
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=3.2e-05 Score=103.02 Aligned_cols=210 Identities=13% Similarity=0.059 Sum_probs=140.9
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHH----------
Q 000176 1669 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV---------- 1738 (1924)
Q Consensus 1669 ~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~v---------- 1738 (1924)
..+|.+..+|.+++..+...+++++|..+.+.+++..|.+- .+|....-+..+.+.+ ..+.-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i-----~~yy~~G~l~~q~~~~--~~~~lv~~l~~~~~~~ 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI-----SALYISGILSLSRRPL--NDSNLLNLIDSFSQNL 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce-----ehHHHHHHHHHhhcch--hhhhhhhhhhhccccc
Confidence 34689999999999999999999999999999998877533 3455444454444422 222222
Q ss_pred --------HHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000176 1739 --------FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALL 1810 (1924)
Q Consensus 1739 --------ferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~ 1810 (1924)
+.+.+.+.....+++.++.+|.+.|++++|.++|+++++..++++.+..+||.++...+.++|++++.+|+.
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~ 177 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIY 177 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222222222236788888999999999999999999999999999999999988877799999999999988
Q ss_pred hCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1811 SLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYP--KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1811 ~~p~~~~----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P--k~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
.+-..++ ..+|..+.... .-+.+.=..+.++++...- +-.++|...-..|....+++++..+|.+++. ..
T Consensus 178 ~~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~ 253 (906)
T PRK14720 178 RFIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HD 253 (906)
T ss_pred HHHhhhcchHHHHHHHHHHhcC--cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cC
Confidence 7532211 13344443322 1233333334444444322 2233444444455566788888888888888 66
Q ss_pred chhHH
Q 000176 1885 PKKMK 1889 (1924)
Q Consensus 1885 pk~~k 1889 (1924)
|++.+
T Consensus 254 ~~n~~ 258 (906)
T PRK14720 254 NKNNK 258 (906)
T ss_pred Ccchh
Confidence 66553
No 221
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.39 E-value=2.7e-05 Score=89.23 Aligned_cols=260 Identities=15% Similarity=0.090 Sum_probs=184.2
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCc----chhhHH----HHHHHHHHHHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR----EENEKL----NIWVAYFNLENE 1726 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~----ee~ekl----~lWiayl~le~~ 1726 (1924)
+..--+..+++|.|...|+-.-+.++-+..++.+|+++.|..-|...|+..|.. +-++++ ..|...-.+-..
T Consensus 86 Gksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~ 165 (504)
T KOG0624|consen 86 GKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA 165 (504)
T ss_pred cCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 446667889999999999999999999999999999999999999999877743 223333 334433333333
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHH
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAV 1804 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l 1804 (1924)
+++-+-..|.+.....+...|=. .+|...+..|...|+...|..-+..+-+.-.++...++...+.+++. +.+.+...
T Consensus 166 ~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred hcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 33224588888889999888864 88888999999999999999999888888888899999999998888 99999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCH
Q 000176 1805 VQRALLSLPRHKHIKFISQTAIL------------EFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEIRLGDV 1868 (1924)
Q Consensus 1805 ~~ral~~~p~~~~~~~~~~~A~l------------e~~~g~~e~Ar~lfe~aL~~~Pk~~d----lw~~y~~le~k~gd~ 1868 (1924)
...+|+.+|.++. .+-.|-++ ....+++-.+.+-.|+.|+..|.-+. ........+...+++
T Consensus 246 iRECLKldpdHK~--Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLKLDPDHKL--CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHccCcchhh--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 9999999998753 22222211 12455667777777777777776333 333444445556677
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1869 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1869 ~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
-+|.....+++. +.|+++ ..+..-++-......++.|..-|++|+++-
T Consensus 324 ~eAiqqC~evL~--~d~~dv-~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 324 GEAIQQCKEVLD--IDPDDV-QVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHh--cCchHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 777777777776 666655 333333333333334566666666666553
No 222
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.38 E-value=9.1e-06 Score=99.32 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=100.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000176 1661 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1740 (1924)
Q Consensus 1661 ~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vfe 1740 (1924)
...|++.+..+|++..+|++|+.++...-........ .... ..+.-..+|+
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~---------------------------~~~a--~~E~klsile 55 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKA---------------------------ERRA--LAERKLSILE 55 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchh---------------------------hHHH--HHHHHHHHHH
Confidence 3468899999999999999999998654321110000 0000 0123344455
Q ss_pred HHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCC
Q 000176 1741 RALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRH 1815 (1924)
Q Consensus 1741 rAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~p~~ 1815 (1924)
||++.+|.. .++..|+..+.+....++..+.+++++..++.++.+|..|..|.... .++..+.+|.++|..+...
T Consensus 56 rAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~ 135 (321)
T PF08424_consen 56 RALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRR 135 (321)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh
Confidence 555544432 45555555555545555555556666666666666666666666653 5666666666666654321
Q ss_pred ----------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000176 1816 ----------------KHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1816 ----------------~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
..+.++.+++.|+.+.|-.|+|.++++-++..+
T Consensus 136 ~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 136 RSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 125788999999999999999999999999863
No 223
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=98.36 E-value=5.2e-07 Score=119.46 Aligned_cols=72 Identities=36% Similarity=0.698 Sum_probs=66.7
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEE
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1525 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~l 1525 (1924)
...+++|++|.|+|++|.+||+||+|.+ +++||+|+|++++.++.++.+.|++||.|+|+|+++|. ++||+|
T Consensus 613 ~~~~~~G~i~~G~V~~I~~~GafVei~~-g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 613 TAEPEVGKIYEGKVVRIMDFGAFVEILP-GKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred hcccccCcEEEEEEEEEeCCEEEEEECC-CcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 3467899999999999999999999987 79999999999999999999999999999999999997 788764
No 224
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.36 E-value=0.00014 Score=90.51 Aligned_cols=131 Identities=9% Similarity=0.082 Sum_probs=99.4
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
..+|++.|..+|...|+|..+|..++-.+.|.++++-....-.+.++..|.. ..-|+.|+--....|++ ..|.
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~-----ra~w~~~Avs~~L~g~y--~~A~ 163 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ-----RASWIGFAVAQHLLGEY--KMAL 163 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHH--HHHH
Confidence 6678999999999999999999999999999999999999999999877642 34799888877777754 5565
Q ss_pred HHHHHHHhcC---CCH----------------------------------------HHHHHHHHHHHHhCChHHHHHHHH
Q 000176 1737 KVFQRALQYC---DPK----------------------------------------KVHLALLGLYERTEQNKLADELLY 1773 (1924)
Q Consensus 1737 ~vferAl~~~---~~~----------------------------------------~i~~~l~~i~~~~gk~e~A~~~fe 1773 (1924)
.+.+.-.+.+ ++. ..-...+.++.+.+++++|..+|.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 5555544443 221 111122336788899999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHH
Q 000176 1774 KMIKKFKHSCKVWLRRVQRLL 1794 (1924)
Q Consensus 1774 ~~lk~~~~~~~vw~~~a~~l~ 1794 (1924)
+++.++|++...+..+-..+.
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHH
Confidence 999999988877776666554
No 225
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.35 E-value=4.3e-05 Score=96.63 Aligned_cols=222 Identities=18% Similarity=0.213 Sum_probs=172.1
Q ss_pred CchHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcc--------------hh-h-------HH
Q 000176 1658 PRTPDEFERLVRSSP-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--------------EN-E-------KL 1714 (1924)
Q Consensus 1658 p~a~~~ferll~~~P-~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~e--------------e~-e-------kl 1714 (1924)
..|.+...++|..+| ++...|.-++-..-.++++..|..+-+-++...+.+. +. | ++
T Consensus 495 ~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 495 TSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKL 574 (799)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHH
Confidence 344555667777754 6899999999999999999999999999998766410 00 1 23
Q ss_pred HHHHHHHHHHHHcCCC--------------CHHHHHHHHHHHHhc--------C-----C--------C------HHHHH
Q 000176 1715 NIWVAYFNLENEYGNP--------------PEEAVVKVFQRALQY--------C-----D--------P------KKVHL 1753 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~--------------~~e~a~~vferAl~~--------~-----~--------~------~~i~~ 1753 (1924)
.+|-+--.++...++. +.-.+...+.++... + | . ..+|.
T Consensus 575 ~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwl 654 (799)
T KOG4162|consen 575 ALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWL 654 (799)
T ss_pred HHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHH
Confidence 4565222221111100 111222333333221 1 1 1 27899
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000176 1754 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832 (1924)
Q Consensus 1754 ~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g 1832 (1924)
..+..+...++.++|.-....+-+.++....+|+..+..+... +.++|.+.|.-|+..+|.+ +......|.++.+.|
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h--v~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH--VPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999 9999999999999999987 689999999999999
Q ss_pred CHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1833 VAD--RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1833 ~~e--~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
+.- .+|.++..+++.+|.+.++|+.++....+.|+.++|-..|.-|+..
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 754 4555999999999999999999999999999999999999999983
No 226
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=2.4e-05 Score=94.95 Aligned_cols=130 Identities=14% Similarity=0.037 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
...|+-.+.-+.+.++++.|+..+..+++..|+++-+|...++.+++. +..+|.+.|++++...|.. .-+|+.||+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~a 383 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQA 383 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHH
Confidence 478888888999999999999999999999999999999999999999 9999999999999999987 4899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1828 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1828 e~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+++.|++.+|..++.+.+..+|.+...|..+++.+..+|+..++..-+-....
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877766665
No 227
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=98.32 E-value=1.4e-06 Score=115.66 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=72.0
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
.++++|+++.|.|+++.++|+||+|.++.+|++|+++++|.++.++.+.|++||.|+++|+++|++ ++|.||+|..
T Consensus 617 ~~~~vG~v~~G~V~~I~~fGafVei~~~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~~ 692 (693)
T PRK11824 617 AEPEVGEIYEGKVVRIVDFGAFVEILPGKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKAV 692 (693)
T ss_pred ccCcCCeEEEEEEEEEECCeEEEEECCCCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEec
Confidence 357899999999999999999999999999999999999999999999999999999999999986 9999999863
No 228
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.30 E-value=0.00029 Score=90.43 Aligned_cols=89 Identities=10% Similarity=0.003 Sum_probs=50.4
Q ss_pred HHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 000176 1790 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1868 (1924)
Q Consensus 1790 a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~ 1868 (1924)
++.+-.. ++++|.++.++||...|.. +++++.-|.++-..|+++.|...++.+-..++.+--+=...+..+++.|++
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~--~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTL--VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCH
Confidence 4444444 5566666666666555554 455555566666666666666666665555555545555555555566666
Q ss_pred HHHHHHHHHHHh
Q 000176 1869 DLIRGLFERAIS 1880 (1924)
Q Consensus 1869 ~~ar~lferal~ 1880 (1924)
+.|..++..-..
T Consensus 279 e~A~~~~~~Ftr 290 (517)
T PF12569_consen 279 EEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHhhcC
Confidence 665555555444
No 229
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.30 E-value=2.5e-05 Score=103.93 Aligned_cols=197 Identities=11% Similarity=0.114 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH-------
Q 000176 1712 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC------- 1783 (1924)
Q Consensus 1712 ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~------- 1783 (1924)
.....|.++++++...+ ..++|.++++++++..|.. ..|+.++.+|.+.+++.+|.-+ +++..++...
T Consensus 29 ~n~~a~~~Li~~~~~~~--~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSEN--LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 34678999999988888 4599999999999999986 8888888899999888877776 6666665444
Q ss_pred ------------HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1784 ------------KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1784 ------------~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
.+.+.+|.+|-+. +.++|.++|+++|+..|.+ +.+..+||.++... +.++|++++.+|+..+=+
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN--PEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 4555556555555 6666666666666666554 45666666666655 666666666666654321
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1851 ------RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1851 ------~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
-.++|..|+..... +.+---.+.++++. ..-..++-.+|.-.-+...+..+++.+..++.+++++
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~--d~d~f~~i~~ki~~-~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSD--DFDFFLRIERKVLG-HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred hhcchHHHHHHHHHHhcCcc--cchHHHHHHHHHHh-hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 12345555443222 22222222222222 1111222223333333334444555666666666654
No 230
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=98.30 E-value=1.1e-05 Score=97.36 Aligned_cols=98 Identities=20% Similarity=0.312 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 000176 1766 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRSMFEG 1843 (1924)
Q Consensus 1766 e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~-~e~Ar~lfe~ 1843 (1924)
.+...+|++++.+|+.+.++|..|+.|..+. .+.+...+|..||...|.+ +.+|...|.++|..+. .+.||.+|.+
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~--~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN--PDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--chhHHhhhhhHHhhccchHHHHHHHHH
Confidence 4667889999999999999999999999988 7999999999999999998 5999999999998774 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHc
Q 000176 1844 ILSEYPKRTDLWSIYLDQEIRL 1865 (1924)
Q Consensus 1844 aL~~~Pk~~dlw~~y~~le~k~ 1865 (1924)
+|+.+|++..+|..|.+||...
T Consensus 166 gLR~npdsp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFRMELMY 187 (568)
T ss_pred HhhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999864
No 231
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=98.30 E-value=3.8e-06 Score=94.24 Aligned_cols=75 Identities=31% Similarity=0.435 Sum_probs=67.8
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeC----------CCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEE
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLS----------RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1432 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~----------~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri 1432 (1924)
..+++|++|.|+|+++.++|+||+|. .+..|++|++++++.+..++.+.|++||.|.|+|++++ +++
T Consensus 60 ~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~G~l~~s~i~~~~~~~~~~~~~~GD~V~akV~~i~---~~i 136 (189)
T PRK09521 60 PLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKLAYIHISQVSDGYVESLTDAFKIGDIVRAKVISYT---DPL 136 (189)
T ss_pred CCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCceeeEEhhHcChhhhhhHHhccCCCCEEEEEEEecC---CcE
Confidence 34689999999999999999999984 46899999999999988888999999999999999998 789
Q ss_pred EEEeeccc
Q 000176 1433 EVTLKTSD 1440 (1924)
Q Consensus 1433 ~LSlk~~~ 1440 (1924)
.||+|...
T Consensus 137 ~LS~k~~~ 144 (189)
T PRK09521 137 QLSTKGKD 144 (189)
T ss_pred EEEEecCC
Confidence 99998643
No 232
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=7.4e-05 Score=84.51 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=131.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 000176 1718 VAYFNLENEYGNPPEEAVVKVFQR-ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1796 (1924)
Q Consensus 1718 iayl~le~~~g~~~~e~a~~vfer-Al~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~ 1796 (1924)
..+.+.+...|. .+....+... ++.+..+..+...++....+.|++..|...|.++....|++..+|...+-.|.+.
T Consensus 70 ~~~a~a~~~~G~--a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGD--ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhccc--ccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 555666666663 2444444444 4444444577777999999999999999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1797 -QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875 (1924)
Q Consensus 1797 -~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lf 1875 (1924)
+++.|+..|.++++..|... .+..++|..++-.|+++.|++++..+-..-+.+..+-..++......|+++.|+.+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999999999885 899999999999999999999999998888888899999999999999999999887
Q ss_pred HHHH
Q 000176 1876 ERAI 1879 (1924)
Q Consensus 1876 eral 1879 (1924)
..-+
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6533
No 233
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.25 E-value=0.00021 Score=91.79 Aligned_cols=224 Identities=14% Similarity=0.139 Sum_probs=156.7
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhcCCcchhhH-----------HHHHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM-----ADVEKARSIAERALQTINIREENEK-----------LNIWV 1718 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~-----~e~dkAr~v~eraL~~i~~~ee~ek-----------l~lWi 1718 (1924)
++..+|...|..+|..||++...+..|..+.... .+.+...++|+......|...-..+ ...--
T Consensus 52 g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~ 131 (517)
T PF12569_consen 52 GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLD 131 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHH
Confidence 5678899999999999999999999998887322 3577778888877655543221111 12333
Q ss_pred HHHHHHHHcCCC-----------CHHH---HHHHHHHHH---hcC------------CC-HHHH--HHHHHHHHHhCChH
Q 000176 1719 AYFNLENEYGNP-----------PEEA---VVKVFQRAL---QYC------------DP-KKVH--LALLGLYERTEQNK 1766 (1924)
Q Consensus 1719 ayl~le~~~g~~-----------~~e~---a~~vferAl---~~~------------~~-~~i~--~~l~~i~~~~gk~e 1766 (1924)
.|+.-.+.-|-| +.++ ..++++.-+ +.+ ++ .-+| +-++..|...|+++
T Consensus 132 ~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~ 211 (517)
T PF12569_consen 132 EYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYE 211 (517)
T ss_pred HHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHH
Confidence 455444444432 1122 222222222 111 11 2356 55688999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1767 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1845 (1924)
Q Consensus 1767 ~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL 1845 (1924)
+|.+..++++..-|..+++|+..|.++... ++.+|.+.++.|-...+.+. -+=.+.+...++.|+++.|..++....
T Consensus 212 ~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR--yiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 212 KALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR--YINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999 99999999999999987774 577888889999999999999998876
Q ss_pred HhC--CC-CHH----HHHHHHHHHH--HcCCHHHHHHHHHHHHh
Q 000176 1846 SEY--PK-RTD----LWSIYLDQEI--RLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1846 ~~~--Pk-~~d----lw~~y~~le~--k~gd~~~ar~lferal~ 1880 (1924)
+.. |. +.. +|+..-.-+. +.|++..|...|..+..
T Consensus 290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 654 21 111 4554444443 56777777777766554
No 234
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.23 E-value=8.4e-05 Score=84.07 Aligned_cols=171 Identities=11% Similarity=0.028 Sum_probs=143.0
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1735 VVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1735 a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
+...+-++...+|. ..+ ..+...|...|+-+.+..+.....-.++.+..+...++..+++. ++..|...|.++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 44444455555554 477 88889999999998888888888888888888888899999999 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1892 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw 1892 (1924)
|.+ ..+|...|-.+.+.|+.+.||.-|.++++..|....+.+.++..+.-.|+++.|+.++.++.. .++.+. .+-
T Consensus 131 p~d--~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~-~v~ 205 (257)
T COG5010 131 PTD--WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADS-RVR 205 (257)
T ss_pred CCC--hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCch-HHH
Confidence 887 599999999999999999999999999999999999999999999999999999999999998 555444 344
Q ss_pred HHHHHHHHHcCCHHHHHHH
Q 000176 1893 KKYLEYEKSVGEEERIEYV 1911 (1924)
Q Consensus 1893 ~~yl~~E~~~G~~~~~~~v 1911 (1924)
....-.-..+|++..++.+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 206 QNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHhhcCChHHHHhh
Confidence 4444444556777776654
No 235
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.21 E-value=4e-06 Score=76.09 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=56.6
Q ss_pred ccEEEEEEEEEecceeEEEeccCCceeEEEeeeecCCc---------ccccCCeE-EEEEEEeeccccEEEEeec
Q 000176 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA---------TVESGSVI-QAAILDVAKAERLVDLSLK 939 (1924)
Q Consensus 875 G~~v~g~V~~i~~~g~~v~l~~~~~v~g~i~~~~l~~~---------~~~~G~~v-~~~Vl~vd~~~~~v~ls~k 939 (1924)
|++|+|+|.++++++++|+++++ ++.|++|..||+|+ ++++||++ .++|| +...+.+.+|.|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l~~~-~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL--~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAILPE-EIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCL--SNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEecCC-CcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEE--eccccEEEEecC
Confidence 78999999999999999999987 89999999999983 79999999 77788 889999988865
No 236
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.3e-05 Score=89.48 Aligned_cols=118 Identities=18% Similarity=0.143 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQ 1806 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~----~~~~A~~l~~ 1806 (1924)
.+....-++.-++.+|.+ +-|..|+.+|...+++..|...|.++.+.-++++.+|..|++.++.+ ...+++.+|.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 577778889999999987 99999999999999999999999999999999999999999999887 6788999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1807 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1807 ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
++++..|.+ +...+.+|.-+|+.|++.+|...++..|...|.+
T Consensus 218 ~al~~D~~~--iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPAN--IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 999998877 7899999999999999999999999999999876
No 237
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=98.17 E-value=4.2e-06 Score=96.82 Aligned_cols=77 Identities=26% Similarity=0.388 Sum_probs=68.9
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc----cCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~----~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.++||+|.|+|+++.++|+||.|.. ...|++|++++++.++ .+....|++||.|+|+|++++++ +++.||+|..
T Consensus 61 P~vGDiViG~V~~i~~~~~~vdI~~-~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~~-~~~~LS~k~~ 138 (235)
T PRK04163 61 PKVGDLVIGKVTDVTFSGWEVDINS-PYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDRT-RDVVLTLKGK 138 (235)
T ss_pred CCCCCEEEEEEEEEeCceEEEEeCC-CceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECCC-CcEEEEEcCC
Confidence 4799999999999999999999975 7999999999999876 67888999999999999999964 4599999987
Q ss_pred ccC
Q 000176 1531 YFK 1533 (1924)
Q Consensus 1531 ~~~ 1533 (1924)
++.
T Consensus 139 ~lG 141 (235)
T PRK04163 139 GLG 141 (235)
T ss_pred CCC
Confidence 663
No 238
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.00014 Score=88.38 Aligned_cols=131 Identities=9% Similarity=0.062 Sum_probs=117.0
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1858 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y 1858 (1924)
+.....|+-.+.-.+.. ++++|+..+...++..|++ +-+|...++++++.++.++|.+.|++++..+|...-+|..|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N--~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN--PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 56788899888888888 9999999999999999987 58899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1859 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1859 ~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rA 1915 (1924)
++.+++.|++.+|..++.+.+. ..|.++ ..|....+-+...|+..++...+..+
T Consensus 381 a~all~~g~~~eai~~L~~~~~--~~p~dp-~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLF--NDPEDP-NGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCCCc-hHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 9999999999999999999998 666777 68999998888899877766554433
No 239
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.16 E-value=0.00074 Score=80.38 Aligned_cols=225 Identities=15% Similarity=0.156 Sum_probs=171.2
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCc-chhhHHHHHHHHHH
Q 000176 1644 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFN 1722 (1924)
Q Consensus 1644 ~~~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~-ee~ekl~lWiayl~ 1722 (1924)
+++..+.-+...+.|.+..-.+.++...|.+..+-.--.++|.+.|++...-.+....-+.--.+ +|..++.-| +|..
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~-a~~g 234 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ-AWEG 234 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH-HHHH
Confidence 56777776667779999999999999999999999999999999999999988887776643332 344444333 3333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q 000176 1723 LENEYGNPPEEAVVKVFQRALQYCDP-----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1796 (1924)
Q Consensus 1723 le~~~g~~~~e~a~~vferAl~~~~~-----~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~- 1796 (1924)
+..+..+ .+-+.. +..-.+..|. -++-..|+.-+.+.|.+++|.++.+.++++.-+. . +..++-..
T Consensus 235 lL~q~~~--~~~~~g-L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~----L~~~~~~l~ 306 (400)
T COG3071 235 LLQQARD--DNGSEG-LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-R----LCRLIPRLR 306 (400)
T ss_pred HHHHHhc--cccchH-HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-h----HHHHHhhcC
Confidence 3333331 111111 2222333332 2788899999999999999999999999875333 2 22333222
Q ss_pred --CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1797 --QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1797 --~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
++..-.+..++.++..|.+. .+++.+|+++++++.+.+|.+.|+.+++.-|.- .-|...++.+.+.|+...|.++
T Consensus 307 ~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred CCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHH
Confidence 78888889999999999884 899999999999999999999999999877764 5677788999999999999999
Q ss_pred HHHHHh
Q 000176 1875 FERAIS 1880 (1924)
Q Consensus 1875 feral~ 1880 (1924)
++.++.
T Consensus 384 r~e~L~ 389 (400)
T COG3071 384 RREALL 389 (400)
T ss_pred HHHHHH
Confidence 999986
No 240
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=7.8e-05 Score=88.12 Aligned_cols=260 Identities=14% Similarity=0.100 Sum_probs=167.6
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcch--hhHHHHHHHHHHH---HHHcCCC
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE--NEKLNIWVAYFNL---ENEYGNP 1730 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee--~ekl~lWiayl~l---e~~~g~~ 1730 (1924)
...++...|..++...|+++..|..-++.++..++++.|.--++..++.-+.+.- .+--+...+..++ +..+.++
T Consensus 64 ~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~ 143 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSK 143 (486)
T ss_pred hHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhh
Confidence 3567888999999999999999999999999999999999999888865553210 0001122222221 1111111
Q ss_pred CHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQ 1802 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~ 1802 (1924)
+.-.+...|.+.-...+. ...-+.-+..+...+.+..|.+.--..++..+.+....+..+..+... +.+.|.
T Consensus 144 ~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~ 223 (486)
T KOG0550|consen 144 QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAI 223 (486)
T ss_pred hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHH
Confidence 101111111111111111 133333444667778888888888888877777777666666666666 888888
Q ss_pred HHHHHHHHhCCCCCh----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCH
Q 000176 1803 AVVQRALLSLPRHKH----------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEIRLGDV 1868 (1924)
Q Consensus 1803 ~l~~ral~~~p~~~~----------~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d----lw~~y~~le~k~gd~ 1868 (1924)
..|+++|...|.+.. +..|..-|.-.|+.|++-.|.+.|-.+|..+|.+.. ++...+....+.|+.
T Consensus 224 ~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 224 NHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL 303 (486)
T ss_pred HHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc
Confidence 888888888877533 356777777788888888888888888888887543 566666777788888
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1869 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1869 ~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
..|..-.++|+. +.+.-.+.+ .+-.....-.++++++.+-|++|++.
T Consensus 304 ~eaisdc~~Al~--iD~syikal-l~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 304 REAISDCNEALK--IDSSYIKAL-LRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhhhhhhhh--cCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888887 666544322 22222233334566666666666653
No 241
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core.
Probab=98.15 E-value=6.4e-06 Score=82.38 Aligned_cols=76 Identities=20% Similarity=0.429 Sum_probs=65.4
Q ss_pred CEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCC-----------CCccCCCCcEEEEEEEEEeCCC-----CEE
Q 000176 1369 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES-----------PEKEFPIGKLVAGRVLSVEPLS-----KRV 1432 (1924)
Q Consensus 1369 ~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~-----------~~~~f~~G~~V~~kVl~vd~e~-----~ri 1432 (1924)
+++.|.|+.+.++|+||+|. +++|++|++++++.+... +...|++||.|+++|.++|.+. +++
T Consensus 1 ~vv~g~V~~i~~~GifV~l~-~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~i 79 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG-PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESKI 79 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc-CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCceE
Confidence 47899999999999999998 599999999999876432 3578999999999999999764 589
Q ss_pred EEEeecccccccc
Q 000176 1433 EVTLKTSDSRTAS 1445 (1924)
Q Consensus 1433 ~LSlk~~~~~~~~ 1445 (1924)
.||++.....|+.
T Consensus 80 ~ls~k~~~~g~~~ 92 (99)
T cd04460 80 GLTMRQPGLGKLE 92 (99)
T ss_pred EEEEecCCCCcHH
Confidence 9999998876654
No 242
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=0.00019 Score=76.33 Aligned_cols=141 Identities=14% Similarity=0.082 Sum_probs=122.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC
Q 000176 1739 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK-KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1816 (1924)
Q Consensus 1739 ferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk-~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~ 1816 (1924)
..+++...|...-.+.+++.+...|++.+|...|+.++. .|.+++.+.+.+++..+.. ++..|...++......|...
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 334444456667788999999999999999999999886 6889999999999999999 99999999999999999887
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHHHh
Q 000176 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD----LIRGLFERAIS 1880 (1924)
Q Consensus 1817 ~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~----~ar~lferal~ 1880 (1924)
.++-...||..+...|.++.|++-||.++..+|. ......|+.|+.++|..+ +++++++++..
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999997 467788999999999654 45677777776
No 243
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.12 E-value=4e-05 Score=95.23 Aligned_cols=107 Identities=14% Similarity=0.013 Sum_probs=91.7
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~ 1831 (1924)
...+..+...+++++|.+.|++++...+.+..+|+.++..++.. ++++|...|++|+...|.+ ..+|..+|.+++..
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHh
Confidence 34456667889999999999999999999999999999999999 9999999999999998876 58899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
|+++.|...|++++...|++..++......
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999987764444433
No 244
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.11 E-value=2.7e-05 Score=75.19 Aligned_cols=96 Identities=19% Similarity=0.137 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
|+.++.++...+++++|...|+++++..+....+|..++..+... ++++|...|++++...|... .+|..+|.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHHH
Confidence 444555555555555555555555555544445555555555555 55555555555555544432 445555555555
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 000176 1831 NGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~P 1849 (1924)
.|+++.|...|++++...|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 5555555555555554443
No 245
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.10 E-value=0.00036 Score=81.74 Aligned_cols=184 Identities=11% Similarity=-0.010 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1749 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~---- 1749 (1924)
+...|..-+.-+++.|++++|.+.|++++...|.+...+...+|++|+.+ ..+ +.+.|...|++.++..|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy--~~~--~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY--KNA--DLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHhCcCCCchH
Confidence 55666677777788899999999999999988887665666677777665 456 3488999999999988863
Q ss_pred HHHHHHHHHHHHhC------------------ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 000176 1750 KVHLALLGLYERTE------------------QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~g------------------k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~ 1811 (1924)
.+++.++..+...+ ...+|...|++.++.||++.- ..+|+..+..+-..
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-------------a~~A~~rl~~l~~~ 173 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-------------TTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-------------HHHHHHHHHHHHHH
Confidence 55666655432221 134677889999999987754 34444333333322
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT---DLWSIYLDQEIRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~---dlw~~y~~le~k~gd~~~ar~lferal 1879 (1924)
+. .--...|.+|++.|.+..|..-|+.++..+|... +.....+..+.+.|..+.|........
T Consensus 174 la-----~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LA-----KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH-----HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 21 1233678899999999999999999999999854 456667788889999999988776544
No 246
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.08 E-value=6.1e-05 Score=77.61 Aligned_cols=103 Identities=10% Similarity=0.105 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTA 1825 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A 1825 (1924)
+++..+..+.+.+++++|.+.|++++..++++ ..+++.++..+.+. +++.|..+|++++...|.+. ...++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45555666666666666666666666655443 44566666666666 66666666666666655542 134566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
.++.+.|+++.|...|++++..+|++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666666665543
No 247
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=8.5e-05 Score=80.08 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=93.0
Q ss_pred HhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHH
Q 000176 1761 RTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVAD 1835 (1924)
Q Consensus 1761 ~~gk~e~A~~~fe~~lk~~~~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e 1835 (1924)
..++...+.+.++.+.+.++.+ ...++.++..++.. ++++|...|+.++...|... ...++..+|.+++..|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4778888888888988888877 56677788888888 99999999999988775432 1346778888889999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1836 ~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal 1879 (1924)
.|...++.. ...+-....|...++++.+.|+++.|+..|++||
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999998763 3334455678888889999999999999998874
No 248
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE.
Probab=98.07 E-value=1.2e-05 Score=89.47 Aligned_cols=77 Identities=26% Similarity=0.576 Sum_probs=66.3
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCcEEEEEEEEEe-----cC
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVD-----KE 1519 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~-----------~~~~~~~~Gd~Vk~~Vl~id-----~e 1519 (1924)
.+|+++.|+|++++++|+||+|+ .++|++|.+++.+++.. +....|+.||.|+++|+++| ++
T Consensus 80 ~~gEvv~G~V~~v~~~GifV~lg--~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~ 157 (179)
T TIGR00448 80 ELGEIVEGEVIEIVEFGAFVSLG--PFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRPE 157 (179)
T ss_pred cCCCEEEEEEEEEEeeEEEEEeC--CceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCCC
Confidence 46999999999999999999995 59999999999876532 12367999999999999998 67
Q ss_pred CCeeEEeccccccCC
Q 000176 1520 KRRISLGMKSSYFKN 1534 (1924)
Q Consensus 1520 ~~ri~lslK~s~~~~ 1534 (1924)
..+|.+|||+.|...
T Consensus 158 ~~~I~lt~k~~~LG~ 172 (179)
T TIGR00448 158 GSKIGLTMRQPLLGK 172 (179)
T ss_pred cceEEEEeccCcCCc
Confidence 889999999988744
No 249
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=98.07 E-value=5.3e-06 Score=110.06 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=66.0
Q ss_pred CccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEE
Q 000176 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828 (1924)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~l 828 (1924)
.+.++|+++.|.|++|+++|+||++++++.||+|.|++++.++.++.+.|++||.|+|+|+++|. ++|+.|
T Consensus 614 ~~~~~G~i~~G~V~~I~~~GafVei~~g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 614 AEPEVGKIYEGKVVRIMDFGAFVEILPGKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred cccccCcEEEEEEEEEeCCEEEEEECCCcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 35788999999999999999999999999999999999999999999999999999999999998 677654
No 250
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible.
Probab=98.06 E-value=1.7e-05 Score=73.01 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=54.6
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCC--CEEEEE
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--KRVEVT 1435 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~--~ri~LS 1435 (1924)
+.|++|+|+|.++++.|+||+++. .+|++|.++++. .+.|++|+.|++.|++++.++ .+|.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig~-~eg~lp~~e~~~------~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLGK-VEAILPKKEQIP------GESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcCC-eEEEeeHHHCCC------CCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 479999999999999999999985 999999999873 456899999999999999654 357766
No 251
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible.
Probab=98.06 E-value=1.5e-05 Score=73.47 Aligned_cols=63 Identities=19% Similarity=0.403 Sum_probs=54.6
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCC--CeEEEe
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLS 829 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~--~r~~lS 829 (1924)
+.|+++.|.|.+++++|+||.+. +..||+|+++++ +.+.|++|+.|++.|++++.++ ..+.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig-~~eg~lp~~e~~------~~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLG-KVEAILPKKEQI------PGESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcC-CeEEEeeHHHCC------CCCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 46999999999999999999995 599999999986 3457899999999999999765 357776
No 252
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=98.06 E-value=3e-05 Score=89.76 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=64.5
Q ss_pred CCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCC----CCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEee
Q 000176 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG----CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1924)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~----~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~ 656 (1924)
++|+++.|.|+++.++|++|++..+..|+||.+++++..+ .++.+.|++|+.|.|+|+++++++ .+.|||+.
T Consensus 62 ~vGDiViG~V~~i~~~~~~vdI~~~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~~~-~~~LS~k~ 137 (235)
T PRK04163 62 KVGDLVIGKVTDVTFSGWEVDINSPYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDRTR-DVVLTLKG 137 (235)
T ss_pred CCCCEEEEEEEEEeCceEEEEeCCCceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECCCC-cEEEEEcC
Confidence 5799999999999999999999889999999999987654 577788999999999999999764 49999964
No 253
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=98.05 E-value=5.5e-06 Score=104.08 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=82.7
Q ss_pred CCCCCCEEEEEEEEEeCCeE-EEEEccccccchh-----hHhhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeC
Q 000176 542 KFKVGAELVFRVLGVKSKRI-TVTHKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~v~~~~l-~lT~K~~Lv~~~~-----~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~ 615 (1924)
.+++|+.+++.|...+-+|+ ..+.|+.+..... .++..|.+ +.|+++.|+|.++.++|+||++ |++.||||.
T Consensus 86 ~~~vGD~ie~~I~~~~fgRia~q~aKq~i~Qkire~ere~i~~eyk~-~~GeIV~G~V~ri~~~giiVDL-ggvea~LP~ 163 (470)
T PRK09202 86 DAEVGDYIEEEIESVDFGRIAAQTAKQVIVQKIREAERERVYEEYKD-RVGEIITGVVKRVERGNIIVDL-GRAEAILPR 163 (470)
T ss_pred cccCCCeEEEEEccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCEEEEE-CCeEEEecH
Confidence 48999999998877643333 3334444433222 22233321 3799999999999999999999 789999999
Q ss_pred cccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCC--EEEEEEee
Q 000176 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFMM 656 (1924)
Q Consensus 616 sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~--ri~lS~k~ 656 (1924)
+++. |.+.|++|+.++|.|+++|.+++ ++.||.+.
T Consensus 164 sE~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt~ 200 (470)
T PRK09202 164 KEQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRTH 200 (470)
T ss_pred HHcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeCc
Confidence 9995 66889999999999999999877 99999864
No 254
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00072 Score=83.08 Aligned_cols=200 Identities=14% Similarity=0.067 Sum_probs=111.7
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHH-HHHHHHHH---HHHcCCCC
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN-IWVAYFNL---ENEYGNPP 1731 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~-lWiayl~l---e~~~g~~~ 1731 (1924)
..+.+...|..++..+ .+.......++.++..+.+++.+...+.|++.-- +.-+..+ |-.++..+ ....+ +
T Consensus 239 ~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~--~ 313 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKRE--D 313 (539)
T ss_pred hHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHH--h
Confidence 3788899999999988 8888999999999999999999998888875421 1111111 11222221 12223 3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHH---------------------------HHHHHHHhCChHHHHHHHHHHHHhcCCCHH
Q 000176 1732 EEAVVKVFQRALQYCDPKKVHLA---------------------------LLGLYERTEQNKLADELLYKMIKKFKHSCK 1784 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~~i~~~---------------------------l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~ 1784 (1924)
.+.+...|++++......++... -++-+.+.|+|..|...|.+++++.|++..
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 47788888888765433111111 112233445555555555555555555555
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
+|.+.+..+.+. .+..|..-.+.+++..|.. +..|.+-|..++.+.+++.|...|+.++..+|++..+...|.+..
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~--~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNF--IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 555555555555 5555555555555554443 345555555555555555555555555555555544444443333
No 255
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.04 E-value=0.00028 Score=87.83 Aligned_cols=216 Identities=16% Similarity=0.093 Sum_probs=161.3
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
..+|-+...+.++.++.|..-|.-|+-.+-...++++|.+.|..||+.-+. .+.+|-.+.-|..+.+ +.+-..
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-----N~qilrDlslLQ~QmR--d~~~~~ 129 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-----NLQILRDLSLLQIQMR--DYEGYL 129 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHH--hhhhHH
Confidence 445555666788889999999999999999999999999999999976553 3579998888888888 448888
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~--~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
..-.+.++..|.. .-|+.++..+.-.|.+..|..+.+...+.. +.+...+-..-.++.+. ...++- .++.+++.+
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g-~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG-SLQKALEHL 208 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHH
Confidence 8999999999875 889999999999999999999988887755 34555555554555544 222221 145555544
Q ss_pred CCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 000176 1813 PRHK-----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR-GLFERAIS 1880 (1924)
Q Consensus 1813 p~~~-----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar-~lferal~ 1880 (1924)
-... .+.+...-|.++++.+++|+|..+|..++..+|++.+.+..|...+.+-.+.-++. .+|.+.-.
T Consensus 209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3221 13456666788899999999999999999999999887777776665333333333 66666544
No 256
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=98.03 E-value=1e-05 Score=109.14 Aligned_cols=76 Identities=32% Similarity=0.649 Sum_probs=66.0
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCcEEEEEEEEEecCC
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1520 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~-----------~~~~~~~~~Gd~Vk~~Vl~id~e~ 1520 (1924)
+..-++|+++.|+|++|++||+||+|.+.+++||+|+|++++++. .+....|++||.|+|+|+++|.++
T Consensus 622 yl~~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~ 701 (709)
T TIGR02063 622 YMSEKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDT 701 (709)
T ss_pred hhhccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEeccc
Confidence 445578999999999999999999998657999999999987643 223467999999999999999999
Q ss_pred CeeEEec
Q 000176 1521 RRISLGM 1527 (1924)
Q Consensus 1521 ~ri~lsl 1527 (1924)
++|.|++
T Consensus 702 ~~I~~~l 708 (709)
T TIGR02063 702 GKIDFEL 708 (709)
T ss_pred CeEEEEE
Confidence 9999986
No 257
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]
Probab=98.03 E-value=1.2e-05 Score=86.09 Aligned_cols=77 Identities=30% Similarity=0.591 Sum_probs=64.1
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccccc----------C-cccccCCCcEEEEEEEEEecCC----
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----------N-IETIYRAGEKVKVKILKVDKEK---- 1520 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~----------~-~~~~~~~Gd~Vk~~Vl~id~e~---- 1520 (1924)
-.|++|+|.|+++.+||+||.|++ .+||+|+|++.|+++. . -...+++||.|+++|+.+....
T Consensus 80 ~~gEVV~GeVv~~~~~G~fV~igp--~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~~ 157 (183)
T COG1095 80 FRGEVVEGEVVEVVEFGAFVRIGP--LDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRPR 157 (183)
T ss_pred ccccEEEEEEEEEeecceEEEecc--ccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCccc
Confidence 358899999999999999999974 9999999999998441 1 2237999999999999998665
Q ss_pred -CeeEEeccccccCC
Q 000176 1521 -RRISLGMKSSYFKN 1534 (1924)
Q Consensus 1521 -~ri~lslK~s~~~~ 1534 (1924)
.+|.++||+.+...
T Consensus 158 ~~~I~lTmrq~~LGk 172 (183)
T COG1095 158 ESKIGLTMRQPGLGK 172 (183)
T ss_pred cceEEEEeccccCCc
Confidence 57889999877643
No 258
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.03 E-value=0.00021 Score=87.48 Aligned_cols=147 Identities=20% Similarity=0.272 Sum_probs=116.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhc-C------------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000176 1771 LLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------------QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837 (1924)
Q Consensus 1771 ~fe~~lk~~~~~~~vw~~~a~~l~~~-~------------~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~A 1837 (1924)
-|++.++..|.+.+.|+.|+.+.-.. . .+....+|++||+.+|.+ ..++..|.....+..+.+..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHH
Confidence 35555556666666666666655443 1 466778999999999866 58999999988888899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhc-----CCC----------chhHHHHHHHHHHHH
Q 000176 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRL---GDVDLIRGLFERAISL-----SLP----------PKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw~~y~~le~k~---gd~~~ar~lferal~~-----~~~----------pk~~k~lw~~yl~~E 1899 (1924)
...+++++..+|....+|..|+++.... -.+...+.+|.+++.. .-. ...+-.++.++..|.
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998763 3688999999999972 000 123446799999999
Q ss_pred HHcCCHHHHHHHHHHHHHHH
Q 000176 1900 KSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1900 ~~~G~~~~~~~v~~rAle~v 1919 (1924)
...|-.+.|-.+++-.+||-
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHCCchHHHHHHHHHHHHHH
Confidence 99999999999999988874
No 259
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.01 E-value=0.00013 Score=93.91 Aligned_cols=191 Identities=15% Similarity=0.109 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
..|.+|... .. ..+-+...|=||++..+.. ..|..|+.+|....+..+|...|.++....+.....|-..+..+
T Consensus 462 ~~w~a~~~~---rK--~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adty 536 (1238)
T KOG1127|consen 462 EFWVALGCM---RK--NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTY 536 (1238)
T ss_pred HHHHHHHHh---hh--hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHh
Confidence 456666544 12 2477889999999998886 99999999999999999999999999999999999999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar 1872 (1924)
.+. ..+.|..+.-++-+..|.......|...+-+|.+.++.-.|..-|+.+|+..|++...|.-++..|-..|.+..|.
T Consensus 537 ae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 537 AEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred hccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHH
Confidence 999 9999999988888877776555788888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHH--HHHHHcCCHHHHHHHHHHH
Q 000176 1873 GLFERAISLSLPPKKMKFLFKKYL--EYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1873 ~lferal~~~~~pk~~k~lw~~yl--~~E~~~G~~~~~~~v~~rA 1915 (1924)
..|.+|.. +.|... |-+|- .+|...|.++.+...+...
T Consensus 617 KvF~kAs~--LrP~s~---y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 617 KVFTKASL--LRPLSK---YGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HhhhhhHh--cCcHhH---HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999998 666433 33433 4677788888876655443
No 260
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=98.01 E-value=5.3e-06 Score=104.17 Aligned_cols=119 Identities=17% Similarity=0.247 Sum_probs=90.0
Q ss_pred ccCCCCeEeeEEEeecCCCeEEEEecccccchhcc--CCCCcCccC--CCCEEEEEEEEEecCeEEEEECCCeEEEecCC
Q 000176 717 VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH--PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 792 (1924)
Q Consensus 717 ~~~~G~~i~~vl~id~~~~~i~ls~K~sl~~~~~~--~~~~~~~~~--~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s 792 (1924)
.+++|+.+...+....-++....+.|+.+...+.. --.-|+.++ .|+++.|+|.+++++|+||.+ |++.||+|++
T Consensus 86 ~~~vGD~ie~~I~~~~fgRia~q~aKq~i~Qkire~ere~i~~eyk~~~GeIV~G~V~ri~~~giiVDL-ggvea~LP~s 164 (470)
T PRK09202 86 DAEVGDYIEEEIESVDFGRIAAQTAKQVIVQKIREAERERVYEEYKDRVGEIITGVVKRVERGNIIVDL-GRAEAILPRK 164 (470)
T ss_pred cccCCCeEEEEEccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEEecCCEEEEE-CCeEEEecHH
Confidence 57899999843322223333455566666554431 111245565 799999999999999999999 7899999999
Q ss_pred ccCcccccCcccCCCCCCEEEEEEEEeeCCCC--eEEEeecccccCCCchhhHHHHHHH
Q 000176 793 KAVDGQRADLSKTYYVGQSVRSNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFLL 849 (1924)
Q Consensus 793 ~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~--r~~lSlk~~~~~~~d~~~~~~~~~~ 849 (1924)
+++ |.+.|++||.|+|+|++|+.+++ .+.||.+ +|.|+..+|..
T Consensus 165 E~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt-------~p~~l~~Lf~~ 210 (470)
T PRK09202 165 EQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRT-------HPEFLKKLFEQ 210 (470)
T ss_pred HcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeC-------cHHHHHHHHHH
Confidence 985 77889999999999999999887 8999875 56677777774
No 261
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.00 E-value=0.00066 Score=77.62 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1749 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~---- 1749 (1924)
....+...+..+++.|++++|...|++.+...|.+.-.....+|+++..+ ..+ +.+.|...|++.++..|..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y--~~~--~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY--KQG--DYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH--HTT---HHHHHHHHHHHHHH-TT-TTHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHHHCCCCcchh
Confidence 34556667777788888888888888888888877666666666666544 556 3478888888888887763
Q ss_pred HHHHHHHHHHHH-----------hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChH
Q 000176 1750 KVHLALLGLYER-----------TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHI 1818 (1924)
Q Consensus 1750 ~i~~~l~~i~~~-----------~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~ 1818 (1924)
.+++.++..+.. .....+|...|+.++.+||++.- ..+|+..+..+-..+.
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y-------------~~~A~~~l~~l~~~la----- 141 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY-------------AEEAKKRLAELRNRLA----- 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT-------------HHHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH-------------HHHHHHHHHHHHHHHH-----
Confidence 444444443322 22345677777777777776554 3344433333322221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d---lw~~y~~le~k~gd~~~ar~ 1873 (1924)
.--...|.++++.|.+..|..-|+.++..+|+... .+..++..+.+.|..+.+..
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 22345688999999999999999999999999754 67777888888888875543
No 262
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.99 E-value=5.9e-05 Score=72.78 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
+|+..+..+... ++++|...|+++++..|.. ..+|..+|.++...++++.|...|++++...|.....|..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN--ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 577888888888 8999999999999888765 3788889999998899999999999999988888888999999999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 000176 1864 RLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~ 1880 (1924)
..|+++.|+..|++++.
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 99999999999998886
No 263
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=6.7e-05 Score=86.27 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=109.5
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000176 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835 (1924)
Q Consensus 1757 ~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e 1835 (1924)
+=+.+.++|++|.+.|.++++..|.++-.|.+.+..|.+. .++.|.+-.+.||..+|.+ .++|.+++..++.+|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--skay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--SKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--HHHHHHHHHHHHccCcHH
Confidence 4456788899999999999999999999999999999999 9999999999999998876 689999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCchhH
Q 000176 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD---LIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1836 ~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~---~ar~lferal~~~~~pk~~ 1888 (1924)
.|..-|.++|..+|.+...|..+-..+.+.+... .+...|+-+......|+-+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 9999999999999999988888877777776655 5666677666655545444
No 264
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00013 Score=75.28 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSI 1857 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~---~dlw~~ 1857 (1924)
++.|+..+..++.+ ++++|...|.+++...|.+.. ..++..+|..+++.|++++|..+|+.++..+|.. ..+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 46788899999999 999999999999999887532 4688999999999999999999999999999885 568999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1858 YLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1858 y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
++.++.+.|+++.|...|++++. ..|+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~ 110 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK--RYPGSS 110 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH--HCcCCh
Confidence 99999999999999999999998 555554
No 265
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.95 E-value=0.00012 Score=91.01 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=92.9
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000176 1786 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1864 (1924)
Q Consensus 1786 w~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k 1864 (1924)
+..-|.-++.. ++++|.++|.+||...|.+ ..+|..+|.+++..|++++|...|++++...|.+..+|..++.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~--~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN--AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34456667777 9999999999999999987 58999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHH-HHHHHHH
Q 000176 1865 LGDVDLIRGLFERAISLSLPPKKMK-FLFKKYL 1896 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~~~~~pk~~k-~lw~~yl 1896 (1924)
.|+++.|...|++++. +.|.... ..|...+
T Consensus 83 lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999999 5555442 2344444
No 266
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.94 E-value=0.0017 Score=91.98 Aligned_cols=265 Identities=11% Similarity=0.018 Sum_probs=177.7
Q ss_pred cCCCCchHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchh-hHHHHHHHHHHHHHHc
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSS-----FVWIKYMAFMLSMADVEKARSIAERALQTINIREEN-EKLNIWVAYFNLENEY 1727 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~-----~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~-ekl~lWiayl~le~~~ 1727 (1924)
.++..++...+++++...|... ..+..++..+...|+++.|+..+++++......... .....+..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 4567788888888886544322 234455666778999999999999999653321111 1112333344556677
Q ss_pred CCCCHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-----CHHHHHHHHHHH
Q 000176 1728 GNPPEEAVVKVFQRALQYCDP---------KKVHLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVWLRRVQRL 1793 (1924)
Q Consensus 1728 g~~~~e~a~~vferAl~~~~~---------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-----~~~vw~~~a~~l 1793 (1924)
| +.+.|...+++++..... ..++..++.++...|++++|...+++++..... ....|..++..+
T Consensus 545 G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 545 G--FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred C--CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 8 569999999999876322 134556777888889999999999998875421 233444566677
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCC-hHHH--HHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHK-HIKF--ISQ--TAILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEI 1863 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~-~~~~--~~~--~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d----lw~~y~~le~ 1863 (1924)
... +++.|...+++++....... +... +.. .+..+...|+.+.|..+++......+.... .+..++..+.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 777 99999999999987643321 1111 111 123334578999999998887653322222 2567778888
Q ss_pred HcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1864 RLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~~----~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
..|++++|..+|++++.. ......+ .....+.......|+.+.+...+.+|++..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a-~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLN-RNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999872 1122222 34555566677889999999999999987643
No 267
>PRK11642 exoribonuclease R; Provisional
Probab=97.93 E-value=2e-05 Score=105.97 Aligned_cols=74 Identities=31% Similarity=0.625 Sum_probs=64.9
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc--c---------CcccccCCCcEEEEEEEEEecCCCee
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--D---------NIETIYRAGEKVKVKILKVDKEKRRI 1523 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~--~---------~~~~~~~~Gd~Vk~~Vl~id~e~~ri 1523 (1924)
-++|+++.|+|++|++||+||+|++.+++||||++++.+++. . +....|++||.|+|+|+++|.++++|
T Consensus 641 ~~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rkI 720 (813)
T PRK11642 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERKI 720 (813)
T ss_pred ccCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCeE
Confidence 379999999999999999999998767999999999987632 1 23467999999999999999999999
Q ss_pred EEecc
Q 000176 1524 SLGMK 1528 (1924)
Q Consensus 1524 ~lslK 1528 (1924)
.|++-
T Consensus 721 ~f~l~ 725 (813)
T PRK11642 721 DFSLI 725 (813)
T ss_pred EEEEe
Confidence 99973
No 268
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.0022 Score=79.02 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=63.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000176 1825 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1904 (1924)
Q Consensus 1825 A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~ 1904 (1924)
|.-.|+.|++..|...|..++...|++..++..-+-.+.+.|.+..|..-.+.++. +.|...+ .|.+=.......-+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~k-gy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIK-AYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHH-HHHHHHHHHHHHHH
Confidence 34456777888888888888888888888888888888888888888888888887 6665553 23332333333456
Q ss_pred HHHHHHHHHHHHHH
Q 000176 1905 EERIEYVKQKAMEY 1918 (1924)
Q Consensus 1905 ~~~~~~v~~rAle~ 1918 (1924)
++.+.+.|+.|+++
T Consensus 442 ydkAleay~eale~ 455 (539)
T KOG0548|consen 442 YDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHhc
Confidence 67777777777654
No 269
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.90 E-value=0.00034 Score=74.42 Aligned_cols=97 Identities=9% Similarity=-0.111 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
+..+.++..+.+.|++++|..+|+.++...+.+...|+.++..+-.. ++++|...|.+|+...|++ +..+...|..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--p~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--PQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--chHHHHHHHHH
Confidence 56677778888999999999999999999899999999999988888 9999999999999999876 48899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 000176 1829 FKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
+..|+.+.|+.-|+.++...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999998766
No 270
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.89 E-value=4.2e-05 Score=86.74 Aligned_cols=155 Identities=18% Similarity=0.249 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHH
Q 000176 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1769 (1924)
Q Consensus 1690 e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~ 1769 (1924)
.+-+.|..||.-|..- ..++|=++.|++.|...... .|.. .+|....-. +.+--.++. .+..
T Consensus 32 ~IvktRr~fE~rL~rr-----~~klnDf~~YI~yE~nlekl---RaKR-~Kr~~v~~K--------~s~sD~sip-qk~~ 93 (435)
T COG5191 32 RIVKTRRKFELRLQRR-----EKKLNDFMRYIKYECNLEKL---RAKR-VKRKKVGKK--------ASFSDMSIP-QKKI 93 (435)
T ss_pred HHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHhhHHHH---HHHH-HHHHHhccc--------ccchhcccc-ceee
Confidence 3567788888777532 23578899999988765521 1111 122221100 011111111 1222
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 000176 1770 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSE 1847 (1924)
Q Consensus 1770 ~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~-~~g~~e~Ar~lfe~aL~~ 1847 (1924)
=+|.++..+|++++++|..|+.+..+. .+.+...+|..+|+..|.+ +++|...+.+++ ..++++.+|++|.++|+.
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n--vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN--VDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 345667778899999999999998888 9999999999999999998 589999888877 788999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 000176 1848 YPKRTDLWSIYLDQEIR 1864 (1924)
Q Consensus 1848 ~Pk~~dlw~~y~~le~k 1864 (1924)
+|..+.+|..|..||..
T Consensus 172 N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 172 NSRSPRIWIEYFRMELM 188 (435)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 99999999999999874
No 271
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=97.87 E-value=3.8e-05 Score=75.26 Aligned_cols=75 Identities=19% Similarity=0.356 Sum_probs=64.3
Q ss_pred cCCCcEEEEEEEEeecceEEEEEe-------cCceeEEeeccccCccccc--CcccccCCCcEEEEEEEEEecCCCeeEE
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIE-------NTNLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRISL 1525 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~-------~~~v~gl~h~sels~~~~~--~~~~~~~~Gd~Vk~~Vl~id~e~~ri~l 1525 (1924)
.++||+|-|+|+++....++|+|- ++...|++|++++...+.+ ++.+.|++||.|+|+|++++. .+.+.|
T Consensus 4 P~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~~-~~~~~L 82 (92)
T cd05791 4 PKVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLGD-ASSYYL 82 (92)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcCC-CCCcEE
Confidence 379999999999999999999992 2368899999999887776 688999999999999999973 466888
Q ss_pred ecccc
Q 000176 1526 GMKSS 1530 (1924)
Q Consensus 1526 slK~s 1530 (1924)
|++..
T Consensus 83 st~~~ 87 (92)
T cd05791 83 STAEN 87 (92)
T ss_pred EecCC
Confidence 88763
No 272
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.86 E-value=0.00024 Score=87.97 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 000176 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1796 (1924)
Q Consensus 1717 Wiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~ 1796 (1924)
--.++.+....+ ..+.|.++|++..+..|. ++..++.+|...++..+|.++++++++.+|.+..++...++|++..
T Consensus 172 v~~Ll~~l~~t~--~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 172 VDTLLKYLSLTQ--RYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHhhcc--cHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 334555544455 347777777777776653 5555777777777777777777777777777777777777777777
Q ss_pred -CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1797 -QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEG 1843 (1924)
Q Consensus 1797 -~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~ 1843 (1924)
+++.|..+.++|+...|.. ...|..+|+.|.+.|+++.|...++.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~--f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSE--FETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 7777777777777777776 47777777777777777777765554
No 273
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.83 E-value=0.00025 Score=83.63 Aligned_cols=104 Identities=10% Similarity=0.169 Sum_probs=80.0
Q ss_pred HHHHHHHH-HHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHH
Q 000176 1750 KVHLALLG-LYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQ 1823 (1924)
Q Consensus 1750 ~i~~~l~~-i~~~~gk~e~A~~~fe~~lk~~~~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~ 1823 (1924)
+.|+..+. ++...+++++|...|+..++.||++ +.+|+.+|..++.. ++++|...|+++++.+|.+. ..++|.+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444443 4455688888888888888888766 57888888888888 88888888888888888753 3578888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1824 TAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1824 ~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
.|..+...|+++.|+.+|+++++.+|+...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 888888888888888888888888888754
No 274
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=97.83 E-value=4.1e-05 Score=102.00 Aligned_cols=74 Identities=31% Similarity=0.595 Sum_probs=64.5
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCcEEEEEEEEEecCCCe
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEKRR 1522 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~-----------~~~~~~~~~Gd~Vk~~Vl~id~e~~r 1522 (1924)
.-++|++++|.|++|++||+||+|++.+++||+|++++.+++. ++....|++||.|+|+|+++|.++++
T Consensus 569 ~~~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~ 648 (654)
T TIGR00358 569 LDKVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRS 648 (654)
T ss_pred hhCCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCe
Confidence 3468999999999999999999998668999999999987641 12346799999999999999999999
Q ss_pred eEEec
Q 000176 1523 ISLGM 1527 (1924)
Q Consensus 1523 i~lsl 1527 (1924)
|.|++
T Consensus 649 I~f~l 653 (654)
T TIGR00358 649 IIFEL 653 (654)
T ss_pred EEEEE
Confidence 99875
No 275
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=2.7e-05 Score=98.15 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=72.2
Q ss_pred hccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1362 ~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
..++++|+++.|+|+++.++|+||.|.++-+|+||+|++++.++....+.+++||.|.++|+.+| +.+|+.||++..
T Consensus 614 ~~e~evg~iy~G~V~ri~~fGaFv~l~~gkdgl~hiS~~~~~rv~kv~dvlk~Gd~v~Vkv~~iD-~~Gri~ls~~~~ 690 (692)
T COG1185 614 TREVEVGEVYEGTVVRIVDFGAFVELLPGKDGLVHISQLAKERVEKVEDVLKEGDEVKVKVIEID-KQGRIRLSIKAV 690 (692)
T ss_pred HhhcccccEEEEEEEEEeecceEEEecCCcceeEEehhhhhhhhhcccceeecCceEEEEEeeec-ccCCccceehhc
Confidence 35789999999999999999999999999999999999999999998999999999999999999 589999999853
No 276
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.001 Score=76.89 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=95.4
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 000176 1789 RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1789 ~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd 1867 (1924)
-+.-+++. +|++|...|.+||+..|.+. -+|..-|..|.+.|.++.|.+-.+.+|..+|.....|..+...+..+|+
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 34556777 99999999999999999984 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHHcC
Q 000176 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEY-EKSVG 1903 (1924)
Q Consensus 1868 ~~~ar~lferal~~~~~pk~~k~lw~~yl~~-E~~~G 1903 (1924)
++.|...|.+||. +.|.+. .|+.=|.+ |.+.+
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne--~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNE--SYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcH--HHHHHHHHHHHHhc
Confidence 9999999999999 888887 45544444 44443
No 277
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=97.76 E-value=6.7e-05 Score=90.80 Aligned_cols=121 Identities=18% Similarity=0.365 Sum_probs=86.4
Q ss_pred hccccCCCCeEeeEEEeecCCCeEEEEecccccch---hc--cCCCCcCccCCCCEEEEEEEEEecCe-EEEEECCCeEE
Q 000176 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS---AQ--QLPSDASHIHPNSVVHGYVCNIIETG-CFVRFLGRLTG 787 (1924)
Q Consensus 714 ~~~~~~~G~~i~~vl~id~~~~~i~ls~K~sl~~~---~~--~~~~~~~~~~~G~~~~G~V~~i~~~G-~fV~f~~~l~G 787 (1924)
+...+++||.++..+..+.-++....+.|+.+... .+ .+...|.+ +.|++++|+|.++.+.| +||.+ |++.|
T Consensus 80 ~d~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea 157 (341)
T TIGR01953 80 IDPDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEG 157 (341)
T ss_pred hccccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEE
Confidence 45578899999844333333343445566654222 11 23333333 58999999999999988 79999 79999
Q ss_pred EecCCccCcccccCcccCCCCCCEEEEEEEEeeCCC--CeEEEeecccccCCCchhhHHHHHHH
Q 000176 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSLKQSCCSSTDASFMQEHFLL 849 (1924)
Q Consensus 788 lv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~--~r~~lSlk~~~~~~~d~~~~~~~~~~ 849 (1924)
++|+++.. |.+.|++||.++|.|++++... ..+.||.+ ++.|+..+|..
T Consensus 158 ~LP~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt-------~~~~v~~Lfe~ 208 (341)
T TIGR01953 158 ILPKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRT-------HPEFVKELLKL 208 (341)
T ss_pred EecHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeC-------cHHHHHHHHHH
Confidence 99999886 4567999999999999999654 46888876 45677777764
No 278
>cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 10 (hs10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.76 E-value=2.9e-05 Score=66.86 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=54.3
Q ss_pred CcEEEEEEEEEeeeEEEEEecCCcceEEEEeeecCC-CCCCCcccccCCCeEEEEEeccC
Q 000176 971 HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 1029 (1924)
Q Consensus 971 G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~-~~~~~~~~f~~Gq~v~~~V~~~~ 1029 (1924)
++.++|.|+++.++|++||+.+.+++..+.-.+|+| ++++.++++++||++.+.|....
T Consensus 1 ~S~htA~VQh~~kdfAvvSL~~t~~L~a~p~~sHLNdtfrf~seklkvG~~l~v~lk~~~ 60 (69)
T cd05701 1 DSRHTAIVQHADKDFAIVSLATTGDLAAFPTRSHLNDTFRFDSEKLSVGQCLDVTLKDPN 60 (69)
T ss_pred CCccchhhhhhhhceEEEEeeccccEEEEEchhhccccccccceeeeccceEEEEEecCc
Confidence 356789999999999999999999999999999999 88889999999999999998765
No 279
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE.
Probab=97.75 E-value=0.00011 Score=81.80 Aligned_cols=77 Identities=22% Similarity=0.382 Sum_probs=65.6
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-----------CCCccCCCCcEEEEEEEEEe-----CCC
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVE-----PLS 1429 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~-----------~~~~~f~~G~~V~~kVl~vd-----~e~ 1429 (1924)
..|+++.|.|++++++|+||++++ ++|+++.+++.+.+.. +....|+.|+.|+++|++++ ++.
T Consensus 80 ~~gEvv~G~V~~v~~~GifV~lg~-~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~~ 158 (179)
T TIGR00448 80 ELGEIVEGEVIEIVEFGAFVSLGP-FDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRPEG 158 (179)
T ss_pred cCCCEEEEEEEEEEeeEEEEEeCC-ceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCCCc
Confidence 369999999999999999999974 9999999999876432 23467999999999999998 678
Q ss_pred CEEEEEeecccccc
Q 000176 1430 KRVEVTLKTSDSRT 1443 (1924)
Q Consensus 1430 ~ri~LSlk~~~~~~ 1443 (1924)
.+|.+|+|+.-..+
T Consensus 159 ~~I~lt~k~~~LG~ 172 (179)
T TIGR00448 159 SKIGLTMRQPLLGK 172 (179)
T ss_pred ceEEEEeccCcCCc
Confidence 89999999866544
No 280
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.74 E-value=0.0063 Score=86.15 Aligned_cols=238 Identities=13% Similarity=0.097 Sum_probs=160.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHH
Q 000176 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLA 1754 (1924)
Q Consensus 1682 ~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~i~~~ 1754 (1924)
+..+...|+++.|+..+++++...+..........+..+.......| +.+.|...|++|+...... ..+..
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G--~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG--ELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 34456789999999999999975553221111222333444456678 5699999999999764321 45566
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC---ChHHHHH
Q 000176 1755 LLGLYERTEQNKLADELLYKMIKKFKH--------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH---KHIKFIS 1822 (1924)
Q Consensus 1755 l~~i~~~~gk~e~A~~~fe~~lk~~~~--------~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~---~~~~~~~ 1822 (1924)
++.++...|+++.|.+.+++++..... ...++..++..+... ++++|...+++++...... .....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 778899999999999999998875321 122344566677777 9999999999998864321 2345666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcCCCchh-HHHHHHH
Q 000176 1823 QTAILEFKNGVADRGRSMFEGILSEYPKRT--DLWSI-----YLDQEIRLGDVDLIRGLFERAISLSLPPKK-MKFLFKK 1894 (1924)
Q Consensus 1823 ~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~--dlw~~-----y~~le~k~gd~~~ar~lferal~~~~~pk~-~k~lw~~ 1894 (1924)
..|.++...|+++.|+..+++++...+... ..|.. .+..+...|+.+.|+.++++.......... ....+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 788899999999999999999977543321 11211 123334578999999998886651111110 0012344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1895 YLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1895 yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
+.......|+.+.+...+++|++..+.
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~ 723 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARS 723 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 555577789999999999999887543
No 281
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional
Probab=97.74 E-value=0.00011 Score=82.66 Aligned_cols=77 Identities=25% Similarity=0.531 Sum_probs=65.2
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCcEEEEEEEEEecCCC--
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKR-- 1521 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~-----------~~~~~~~~Gd~Vk~~Vl~id~e~~-- 1521 (1924)
..+|+++.|+|+++.++|+||+|+ .++|++|.+++.+++.. +....|+.||.|+++|++++.+.+
T Consensus 79 P~~GEVv~g~V~~v~~~Gi~V~lg--~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~ 156 (187)
T PRK08563 79 PELQEVVEGEVVEVVEFGAFVRIG--PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRP 156 (187)
T ss_pred ccCCCEEEEEEEEEEccEEEEEEe--CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCC
Confidence 346999999999999999999996 49999999999876432 235678999999999999997654
Q ss_pred ---eeEEeccccccC
Q 000176 1522 ---RISLGMKSSYFK 1533 (1924)
Q Consensus 1522 ---ri~lslK~s~~~ 1533 (1924)
+|.+|+|..++.
T Consensus 157 ~~~~I~ls~~~~~LG 171 (187)
T PRK08563 157 RGSKIGLTMRQPGLG 171 (187)
T ss_pred CCCEEEEEecCCCCC
Confidence 899999997763
No 282
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.73 E-value=0.00059 Score=75.90 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
.|+.++..+... ++++|...|++++...|... ...+|..+|.+++..|++++|...|++++...|++...|..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444444444 44455555555544433321 1234555555555555555555555555555555555555555554
Q ss_pred HHcCC--------------HHHHHHHHHHHHhcCCCchh
Q 000176 1863 IRLGD--------------VDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1863 ~k~gd--------------~~~ar~lferal~~~~~pk~ 1887 (1924)
...|+ +++|..+|++++. ..|.+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~~ 153 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPNN 153 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCchh
Confidence 44443 3455555666555 44443
No 283
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.73 E-value=0.00078 Score=72.61 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=106.8
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMF 1841 (1924)
Q Consensus 1764 k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~lf 1841 (1924)
+.++|...|+.++..+ .. +...+...++..++.+|... ....++.+|..++..|++++|...|
T Consensus 7 ~~~~a~~~y~~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l 71 (145)
T PF09976_consen 7 QAEQASALYEQALQAL---------------QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAAL 71 (145)
T ss_pred HHHHHHHHHHHHHHHH---------------HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3456666666666432 24 78889999999999998873 2467888899999999999999999
Q ss_pred HHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1842 EGILSEYPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1842 e~aL~~~Pk~---~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
+.++...|+. ..++..++.+++..|+++.|...++.+-. ++-.. ..|....+.....|+.+.|+..|++|+
T Consensus 72 ~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~-~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 72 EKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKA-LAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHH-HHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999988664 33688889999999999999999977433 22233 467777888999999999999999985
No 284
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.73 E-value=0.00039 Score=76.99 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1765 NKLADELLYKMIKKFK--HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSM 1840 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~--~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~l 1840 (1924)
+..+...+...++..+ .....|+..+..+... ++++|...|++++...|.+. ...+|..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555554433 2366788888888877 88888888888887766542 235788888888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHh
Q 000176 1841 FEGILSEYPKRTDLWSIYLDQEI-------RLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1841 fe~aL~~~Pk~~dlw~~y~~le~-------k~gd~~~ar~lferal~ 1880 (1924)
|++++...|.....|...+.++. ..|+++.|...|++++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 88888888888888888887777 55666666666666554
No 285
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.72 E-value=0.00047 Score=89.07 Aligned_cols=185 Identities=14% Similarity=0.062 Sum_probs=155.8
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
...+-..|=++++.+|+-...|-.++.+|....+..+|+..|++|....+... ..|-+....+....+ -+.|.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda-----eaaaa~adtyae~~~--we~a~ 546 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA-----EAAAASADTYAEEST--WEEAF 546 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh-----hhHHHHHHHhhcccc--HHHHH
Confidence 55566677788888999999999999999877799999999999997655422 368888888777774 48888
Q ss_pred HHHHHHHhcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1737 KVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1737 ~vferAl~~~~~~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
.+.-++-+..+.. ..|...+-+|...++...|..-|+.++...|.+...|..+++.|... .+..|...|.+|....
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 8877777777654 78888888999999999999999999999999999999999999999 9999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
|.+. -..+.-|.++..+|.+..|...++..+....+
T Consensus 627 P~s~--y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 627 PLSK--YGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred cHhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 8773 56666788888999999999999999876543
No 286
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.72 E-value=0.00082 Score=71.61 Aligned_cols=101 Identities=10% Similarity=-0.115 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000176 1713 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1791 (1924)
Q Consensus 1713 kl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~ 1791 (1924)
.++.-.+|.......| +.+.|..+|+-++.+.|.. .-|+.|+.++...|++++|.+.|.++....++++..+++.+.
T Consensus 34 ~l~~lY~~A~~ly~~G--~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVK--EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 4566778888888999 5599999999999999986 999999999999999999999999999999999999999999
Q ss_pred HHHhc-CHHHHHHHHHHHHHhCCCC
Q 000176 1792 RLLKQ-QQEGVQAVVQRALLSLPRH 1815 (1924)
Q Consensus 1792 ~l~~~-~~~~A~~l~~ral~~~p~~ 1815 (1924)
.++.. +.+.|++.|+.++..+..+
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccC
Confidence 99999 9999999999999988444
No 287
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.72 E-value=7.6e-05 Score=68.30 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000176 1823 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1823 ~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk 1886 (1924)
..|..+++.|++++|+..|++++..+|++.++|..++.++...|+++.|+..|++++. ..|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 4577777888888888888888888888888888888888888888888888888877 4443
No 288
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0095 Score=74.08 Aligned_cols=241 Identities=12% Similarity=0.151 Sum_probs=147.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhH-HHH----------HH---------------HHHHHH
Q 000176 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-LNI----------WV---------------AYFNLE 1724 (1924)
Q Consensus 1671 ~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ek-l~l----------Wi---------------ayl~le 1724 (1924)
++.+..+-.-+++.+.+++.+++|.++|+..++.....-+.++ .|+ |+ ...-.+
T Consensus 106 ~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~ 185 (652)
T KOG2376|consen 106 DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACIL 185 (652)
T ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHH
Confidence 4556667777888889999999999999988764333212111 111 21 112223
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCC----------C------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHH----
Q 000176 1725 NEYGNPPEEAVVKVFQRALQYCD----------P------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK---- 1784 (1924)
Q Consensus 1725 ~~~g~~~~e~a~~vferAl~~~~----------~------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~---- 1784 (1924)
...|+| ..|.+.++.|++.+. . ..+...++-++...|+.++|.++|...++..+.+..
T Consensus 186 i~~gky--~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av 263 (652)
T KOG2376|consen 186 IENGKY--NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAV 263 (652)
T ss_pred HhcccH--HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHH
Confidence 344644 788888888855441 0 167888888999999999999999998887642211
Q ss_pred -------------------------HHHHHHHHHHhc---------------------CHHHHHHHHHHHHHhCCCCC--
Q 000176 1785 -------------------------VWLRRVQRLLKQ---------------------QQEGVQAVVQRALLSLPRHK-- 1816 (1924)
Q Consensus 1785 -------------------------vw~~~a~~l~~~---------------------~~~~A~~l~~ral~~~p~~~-- 1816 (1924)
....++++++.. ..+.++++ ...+|...
T Consensus 264 ~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~----~a~lp~~~p~ 339 (652)
T KOG2376|consen 264 AVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL----SASLPGMSPE 339 (652)
T ss_pred HhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHhCCccCch
Confidence 111111111111 11112221 22222221
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCch
Q 000176 1817 -HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFE--------RAISLSLPPK 1886 (1924)
Q Consensus 1817 -~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~-~dlw~~y~~le~k~gd~~~ar~lfe--------ral~~~~~pk 1886 (1924)
-+.+...-+..-... .+-.|..++...-..+|.+ ..+-...+++.+..|+++.|..++. ........|
T Consensus 340 ~~~~~ll~~~t~~~~~-~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P- 417 (652)
T KOG2376|consen 340 SLFPILLQEATKVREK-KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP- 417 (652)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh-
Confidence 123333333333333 5677888888888888876 6678888999999999999999998 333322232
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000176 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922 (1924)
Q Consensus 1887 ~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~ 1922 (1924)
.+--....+..+.++...+..++..|+.|.+..
T Consensus 418 ---~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~ 450 (652)
T KOG2376|consen 418 ---GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ 450 (652)
T ss_pred ---hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 122333344455677778999999999999874
No 289
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.70 E-value=0.0013 Score=85.21 Aligned_cols=112 Identities=10% Similarity=0.045 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
...|.+..++++..........++..+|......|++++|...|++++...| +...|..++.++...|++++|...|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455556666655422222246677777777777888888888888888888 467788888888888888888888888
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1878 AISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1878 al~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rA 1915 (1924)
|+. +.|.....+|-.=+-|. -+.+.+...+.++
T Consensus 479 A~~--L~P~~pt~~~~~~~~f~---~~~~~~~~~~~~~ 511 (517)
T PRK10153 479 AFN--LRPGENTLYWIENLVFQ---TSVETVVPYLYRF 511 (517)
T ss_pred HHh--cCCCCchHHHHHhcccc---ccHHHHHHHHHhc
Confidence 887 55554444555545453 3455555444443
No 290
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.0049 Score=77.99 Aligned_cols=227 Identities=12% Similarity=0.074 Sum_probs=144.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1758 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i 1758 (1924)
.+-+....++|-+++|..+|.++-+. . + +-.|+...|.+ ++|.++.+.- ..+.-.+.|+.|+..
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR~-D---------L---lNKlyQs~g~w--~eA~eiAE~~-DRiHLr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKRY-D---------L---LNKLYQSQGMW--SEAFEIAETK-DRIHLRNTYYNYAKY 867 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH-H---------H---HHHHHHhcccH--HHHHHHHhhc-cceehhhhHHHHHHH
Confidence 34455567788889999999888742 1 1 11233344533 4444333211 112224888888988
Q ss_pred HHHhCChHHHHHHHHH----------HHHhcC----------CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC---
Q 000176 1759 YERTEQNKLADELLYK----------MIKKFK----------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR--- 1814 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~----------~lk~~~----------~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~--- 1814 (1924)
++..++.+.|++.|++ |++.+| .++++|.=|++++... ..+.|..+|..|-..+..
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI 947 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRI 947 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheee
Confidence 8888888888888885 444443 4678888899988888 999999988887654421
Q ss_pred ----------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCC---CHHHHHH-----------H
Q 000176 1815 ----------------HKHIKFISQTAILEFKNGVADRGRSMFEGILS------EYPK---RTDLWSI-----------Y 1858 (1924)
Q Consensus 1815 ----------------~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~------~~Pk---~~dlw~~-----------y 1858 (1924)
.....+.+.+|+.|...|++-+|...|-+|-+ .... ...+|+. -
T Consensus 948 ~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred EeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 11235678888999999998888888877622 2211 1123432 1
Q ss_pred HHHHHHcC-CHHHHHHHHHHH---------------------HhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1859 LDQEIRLG-DVDLIRGLFERA---------------------ISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1859 ~~le~k~g-d~~~ar~lfera---------------------l~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
+.+|...| .+++|--+|.+| |+.++.+..--.+.++..+|...+.++++|-.++-.|.
T Consensus 1028 ArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1028 ARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22233333 566666555443 12234443222689999999999999999988887777
Q ss_pred HHHHh
Q 000176 1917 EYVES 1921 (1924)
Q Consensus 1917 e~v~~ 1921 (1924)
+|=.+
T Consensus 1108 ~~~~A 1112 (1416)
T KOG3617|consen 1108 EFSGA 1112 (1416)
T ss_pred HHHHH
Confidence 77554
No 291
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.69 E-value=0.0007 Score=79.94 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHH-Hhc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 000176 1782 SCKVWLRRVQRL-LKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTDLW 1855 (1924)
Q Consensus 1782 ~~~vw~~~a~~l-~~~-~~~~A~~l~~ral~~~p~~~~-~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk---~~dlw 1855 (1924)
....|+..+..+ +.. ++++|...|+..++.+|.+.. ..+++.+|.+++..|+++.|+..|++++..+|+ ..++|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 457788887766 556 999999999999999999753 579999999999999999999999999999887 57899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1856 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1856 ~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
...+..+...|+++.|+..|++++. .+|+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK--KYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 9999999999999999999999998 44443
No 292
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.68 E-value=0.00078 Score=83.47 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
-+-..++.++...+.++.|.++|+++.+.+ +.++..++..++.. +..+|.+++.++++..|.+ ..++...|+|+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 344456677777889999999999999876 45788888988888 8899999999999999877 68999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1878 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfera 1878 (1924)
.+.++++.|..+.++++...|.....|..++..|++.|+++.|...+..+
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998766543
No 293
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.68 E-value=0.00017 Score=66.81 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g-~~e~Ar~lfe~aL~~~P 1849 (1924)
+.+|..+|..++.. ++++|...|+++++.+|.+ ..+|..+|..++..| ++++|+..|+++++.+|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN--AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH--HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 44455555555555 5555555555555555443 345555555555555 45555555555555444
No 294
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.017 Score=72.00 Aligned_cols=244 Identities=14% Similarity=0.141 Sum_probs=154.2
Q ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCc----chh-hHH-HHHHHHHHHHHHcCCCCHHHHHH
Q 000176 1669 RSSPN-SSFVWIKYMAFMLSMADVEKARSIAERALQTI----NIR----EEN-EKL-NIWVAYFNLENEYGNPPEEAVVK 1737 (1924)
Q Consensus 1669 ~~~P~-s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i----~~~----ee~-ekl-~lWiayl~le~~~g~~~~e~a~~ 1737 (1924)
...|. +.++.++.+-.++..|++.+|.++++.|++++ ... ++. +.+ -+-.++.......| +.++|..
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G--qt~ea~~ 245 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG--QTAEASS 245 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc--chHHHHH
Confidence 33454 78888999999999999999999999995422 211 111 112 23344555556778 5688999
Q ss_pred HHHHHHhcCCCHHHHHHHH------------------------------H--------------------HHHHhCChHH
Q 000176 1738 VFQRALQYCDPKKVHLALL------------------------------G--------------------LYERTEQNKL 1767 (1924)
Q Consensus 1738 vferAl~~~~~~~i~~~l~------------------------------~--------------------i~~~~gk~e~ 1767 (1924)
+|...++.++.+.-..+.+ . +..-+++.+.
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999988775421111111 1 1111121122
Q ss_pred HHHHHHHHHHhcCCCHHHHH-HHHHH--HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1768 ADELLYKMIKKFKHSCKVWL-RRVQR--LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEG 1843 (1924)
Q Consensus 1768 A~~~fe~~lk~~~~~~~vw~-~~a~~--l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~ 1843 (1924)
++++. ....+..+...+ .+.+- ..+. .+.+|.+++....+..|.+. ..+....||+.+.+|+++.|..+++.
T Consensus 326 ~r~~~---a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s-~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 326 VRELS---ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS-KVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHH---HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh-HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 22211 111122222221 11111 1111 57788888888888888763 46888899999999999999999995
Q ss_pred HHHhC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1844 ILSEY----P---KRTDLWSIYLDQEIRLGDVDLIRGLFERAISL---SLPP-KKMKFLFKKYLEYEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1844 aL~~~----P---k~~dlw~~y~~le~k~gd~~~ar~lferal~~---~~~p-k~~k~lw~~yl~~E~~~G~~~~~~~v~ 1912 (1924)
.+.++ + ....+-.....++++.++.+.|-.+|..|+.- ..+. .....+|...+.|+.++|+.+++..++
T Consensus 402 ~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 402 FLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred HhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 55322 1 12335555666788888988899999999861 1111 223357889999999999999999999
Q ss_pred HHHHHH
Q 000176 1913 QKAMEY 1918 (1924)
Q Consensus 1913 ~rAle~ 1918 (1924)
+.-++|
T Consensus 482 eel~k~ 487 (652)
T KOG2376|consen 482 EELVKF 487 (652)
T ss_pred HHHHHh
Confidence 887764
No 295
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.00074 Score=81.42 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=82.3
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCC----hHHH
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHK----HIKF 1820 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~------~~~~vw~~~a~~l~~~--~~~~A~~l~~ral~~~p~~~----~~~~ 1820 (1924)
...+.+|.+. ++++|.+.|++++..|. ....++..++.++... ++++|.++|++|+..+.... ...+
T Consensus 79 ~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 79 EEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 3333344333 44555555555554431 1133444555555554 78888888888888753321 2468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPK----RT---DLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1821 ~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk----~~---dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
+.+.|.++.+.|++++|..+|+++....-. +. +.+...+-.++..||+..|+..|++....
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 899999999999999999999999876432 22 24455556677889999999999998873
No 296
>PRK11906 transcriptional regulator; Provisional
Probab=97.64 E-value=0.0013 Score=80.82 Aligned_cols=103 Identities=11% Similarity=0.112 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfe 1876 (1924)
...+|.++-++|+...|.+. .+....|....-.++++.|..+|++++..+|+..++|..++.+.+-.|+.++|+..++
T Consensus 319 ~~~~a~~~A~rAveld~~Da--~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDG--KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56778888888888887774 5555556655666778888888888888888888888888888888888888888888
Q ss_pred HHHhcCCCchhHH-HHHHHHHHHHHHcC
Q 000176 1877 RAISLSLPPKKMK-FLFKKYLEYEKSVG 1903 (1924)
Q Consensus 1877 ral~~~~~pk~~k-~lw~~yl~~E~~~G 1903 (1924)
+++. +.|.+++ .+.+.|++++-.++
T Consensus 397 ~alr--LsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 397 KSLQ--LEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred HHhc--cCchhhHHHHHHHHHHHHcCCc
Confidence 8888 6665543 45677776554343
No 297
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0012 Score=76.86 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc-C--CHHHHHHH
Q 000176 1765 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN-G--VADRGRSM 1840 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~-g--~~e~Ar~l 1840 (1924)
.++...-.+.-+...|++.+-|..++..++.+ +++.|...|.+|++..|++ ++++..||..++.. | +-.+|+.+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 45556666777888999999999999999999 9999999999999999988 59999999977643 3 46799999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1841 fe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
|.++|+.+|.+....+.++.-++..|++.+|...++..+. .+|++..
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~-~lp~~~~ 262 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD-LLPADDP 262 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCCCc
Confidence 9999999999999999999999999999999999999998 4555544
No 298
>cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.63 E-value=0.0003 Score=59.88 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=56.8
Q ss_pred ccEEEEEEEEEeccee-EEEeccCCceeEEEeeeecCCcccccCCeEEEEEEEeeccccEEEEee
Q 000176 875 GSVIEGKVHESNDFGV-VVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 938 (1924)
Q Consensus 875 G~~v~g~V~~i~~~g~-~v~l~~~~~v~g~i~~~~l~~~~~~~G~~v~~~Vl~vd~~~~~v~ls~ 938 (1924)
|+..+.+|.++.++|- .++-++-.|++-..+.+|+.+..+.+|++++|+||++|.-+..|++|+
T Consensus 1 G~~L~LvV~~~~edgsv~fs~g~v~g~tv~AtryH~~g~nl~pGqK~kaviLhvD~l~~~VhVSl 65 (65)
T cd05700 1 GDQLKLVVQDVTEDGSVMFSGGQVSGLTVLASRYHKEGVNVTPGCKLKAVILHVDFVKSQVHVSL 65 (65)
T ss_pred CceEEEEEeeeccCCcEEEecCCcCCcEEEEEEEEecceecCCCceeEEEEEEEeeEEeEEEEeC
Confidence 6778899999888875 477776678888999999999999999999999999999999999985
No 299
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=97.62 E-value=5e-05 Score=91.75 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=70.0
Q ss_pred CccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000176 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1924)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~ 833 (1924)
.++..|-+++|+|+++.++|+||+|+++..||+|.|+++-+.+..|++.+.+||.+.++.+..|+..+.++++-+..
T Consensus 664 ~~l~~g~vy~~tIt~~rd~G~~V~l~p~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~~g~~~ls~ralL 740 (760)
T KOG1067|consen 664 QDLEFGGVYTATITEIRDTGVMVELYPMQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDPRGGIMLSSRALL 740 (760)
T ss_pred cceEeeeEEEEEEeeecccceEEEecCCchhhccchhcccccccChHHHHhhcceeEEEEEeecCccceeehhhhhc
Confidence 45667999999999999999999999999999999999999999999999999999999999999887777665543
No 300
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.0047 Score=78.11 Aligned_cols=223 Identities=21% Similarity=0.162 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHHHc----------CCHHHHH--HHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000176 1674 SSFVWIKYMAFMLSM----------ADVEKAR--SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~----------~e~dkAr--~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vfer 1741 (1924)
+-..|-+.+.+.... |.+..|| ...+||.+. + ++ ...-.| -|..++| -.|+|..+|.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~-~--~e---~eakvA--vLAieLg--MlEeA~~lYr~ 825 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN-G--EE---DEAKVA--VLAIELG--MLEEALILYRQ 825 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC-C--cc---hhhHHH--HHHHHHh--hHHHHHHHHHH
Confidence 456888888887654 4444444 334444432 1 11 122333 4445556 45889999988
Q ss_pred HHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHH----------HHH
Q 000176 1742 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR----------ALL 1810 (1924)
Q Consensus 1742 Al~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~r----------al~ 1810 (1924)
.-+ |-.|-.+|...|.+++|.++-+.--.. .-...|++|+.++... +.+.|.++|++ +|+
T Consensus 826 ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~ 896 (1416)
T KOG3617|consen 826 CKR-------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK 896 (1416)
T ss_pred HHH-------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH
Confidence 744 344555788888888988877653332 3566899999999988 99999999986 455
Q ss_pred hCCCC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------HHhCCCCHHHHHHHHHH
Q 000176 1811 SLPRH--------KHIKFISQTAILEFKNGVADRGRSMFEGI---------------------LSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1811 ~~p~~--------~~~~~~~~~A~le~~~g~~e~Ar~lfe~a---------------------L~~~Pk~~dlw~~y~~l 1861 (1924)
-+|.. ....+|.-||++....|+.|.|...|+.| ++....+..+-+.++.+
T Consensus 897 e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 897 EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARM 976 (1416)
T ss_pred hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHH
Confidence 55531 22479999999999999999999999988 33334455677888999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-----CCchhH-HHHHHHHH------------HHHHHcCCHHHHHHHHHHH
Q 000176 1862 EIRLGDVDLIRGLFERAISLS-----LPPKKM-KFLFKKYL------------EYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1862 e~k~gd~~~ar~lferal~~~-----~~pk~~-k~lw~~yl------------~~E~~~G~~~~~~~v~~rA 1915 (1924)
|...|+..+|...|-||-+.+ ...+.+ ..+|+..+ .||..-|..+.|--+|.||
T Consensus 977 YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhh
Confidence 999999999998888876421 111111 13555443 3566666888888887665
No 301
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=97.61 E-value=0.00017 Score=70.80 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=66.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEe--------CCCcEEEEECccCCCcccC--CCCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIML--------SRKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l--------~~~v~g~v~~selsd~~~~--~~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
.++|++|-|+|++++...++|++ .....|.+|++++...+.. +..+.|++||.|+|+|++++. .+.+.|
T Consensus 4 P~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~~-~~~~~L 82 (92)
T cd05791 4 PKVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLGD-ASSYYL 82 (92)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcCC-CCCcEE
Confidence 37899999999999999999999 7788999999999887776 678899999999999999984 467999
Q ss_pred Eeeccc
Q 000176 1435 TLKTSD 1440 (1924)
Q Consensus 1435 Slk~~~ 1440 (1924)
|++...
T Consensus 83 st~~~~ 88 (92)
T cd05791 83 STAENE 88 (92)
T ss_pred EecCCC
Confidence 987643
No 302
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.60 E-value=0.0013 Score=79.31 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHhcCHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQQQEGVQAVV 1805 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~------~~~~vw~~~a~~l~~~~~~~A~~l~ 1805 (1924)
.+.|...|++| ++.|...+++++|.+.|.++...+. .....|...+..+.+.++++|...|
T Consensus 31 ~e~Aa~~y~~A-------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~ 97 (282)
T PF14938_consen 31 YEEAADLYEKA-------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHH-------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHH-------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 36666666666 5678888888888888888776542 2244455555554444899999999
Q ss_pred HHHHHhCCCCC----hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1806 QRALLSLPRHK----HIKFISQTAILEFKN-GVADRGRSMFEGILSEYPK--R----TDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1806 ~ral~~~p~~~----~~~~~~~~A~le~~~-g~~e~Ar~lfe~aL~~~Pk--~----~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
++|+..+-... ...++...|.++... |++++|...|++++..+.. + ...+...+.++.+.|++++|..+
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~ 177 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEI 177 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99998753322 246889999999988 9999999999999987532 2 34688999999999999999999
Q ss_pred HHHHHhcCCC----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1875 FERAISLSLP----PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1875 feral~~~~~----pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
|+++....+. .-..+.+|..-+-.....||.-.++..+++..
T Consensus 178 ~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 178 YEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999873222 22344444444445666799999998888764
No 303
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.59 E-value=0.038 Score=65.49 Aligned_cols=222 Identities=18% Similarity=0.159 Sum_probs=137.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 000176 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYE 1760 (1924)
Q Consensus 1682 ~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~ 1760 (1924)
++..+-.|+++.||.-|+-++. .| |.--+-+---|+.. ...| .-+.|+.+.++|....|.. =.|.+.+.-..
T Consensus 127 AQaal~eG~~~~Ar~kfeAMl~-dP---EtRllGLRgLyleA-qr~G--areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~ 199 (531)
T COG3898 127 AQAALLEGDYEDARKKFEAMLD-DP---ETRLLGLRGLYLEA-QRLG--AREAARHYAERAAEKAPQLPWAARATLEARC 199 (531)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-Ch---HHHHHhHHHHHHHH-Hhcc--cHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 3334566777777777777773 23 21112222223332 3456 3477777777777777664 45666666666
Q ss_pred HhCChHHHHHHHHHHHHhcCCC------HHH--HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000176 1761 RTEQNKLADELLYKMIKKFKHS------CKV--WLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832 (1924)
Q Consensus 1761 ~~gk~e~A~~~fe~~lk~~~~~------~~v--w~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g 1832 (1924)
..|+++.|+++.+......-.. ... ...-+.-++..+...|+..-..+++..|+- +..-..-|..+++.|
T Consensus 200 ~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdl--vPaav~AAralf~d~ 277 (531)
T COG3898 200 AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDL--VPAAVVAARALFRDG 277 (531)
T ss_pred hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc--chHHHHHHHHHHhcc
Confidence 7777777777776544322111 111 111111111116677777777777777665 356666677777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------------------------------HHcCCHHHHHHHHHHHH
Q 000176 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQE---------------------------------IRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1833 ~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le---------------------------------~k~gd~~~ar~lferal 1879 (1924)
+.-++-.++|.+-+..|. .+||..|.+.- ...|++..||.--|-+.
T Consensus 278 ~~rKg~~ilE~aWK~ePH-P~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 278 NLRKGSKILETAWKAEPH-PDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred chhhhhhHHHHHHhcCCC-hHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 777888888887777765 57777776542 22366666777667666
Q ss_pred hcCCCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 000176 1880 SLSLPPKKMKFLFKKYLEYEKSV-GEEERIEYVKQKAME 1917 (1924)
Q Consensus 1880 ~~~~~pk~~k~lw~~yl~~E~~~-G~~~~~~~v~~rAle 1917 (1924)
. ..|.. .+|....+.|+-. ||..+++....+|+.
T Consensus 357 r--~~pre--s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 357 R--EAPRE--SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred h--hCchh--hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 6 55543 4788888997776 999999999988864
No 304
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=97.58 E-value=0.00017 Score=97.44 Aligned_cols=72 Identities=28% Similarity=0.405 Sum_probs=64.0
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCccc-----------CCCCccCCCCcEEEEEEEEEeCCCCEE
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYV-----------ESPEKEFPIGKLVAGRVLSVEPLSKRV 1432 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~-~v~g~v~~selsd~~~-----------~~~~~~f~~G~~V~~kVl~vd~e~~ri 1432 (1924)
-++|+++.|.|++|+++|+||+|.+ +++|+||+++|++++. .+....|++||.|+++|.++|.++++|
T Consensus 625 ~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~~~I 704 (709)
T TIGR02063 625 EKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDTGKI 704 (709)
T ss_pred ccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEecccCeE
Confidence 4689999999999999999999987 7999999999997642 234567999999999999999999999
Q ss_pred EEEe
Q 000176 1433 EVTL 1436 (1924)
Q Consensus 1433 ~LSl 1436 (1924)
.+++
T Consensus 705 ~~~l 708 (709)
T TIGR02063 705 DFEL 708 (709)
T ss_pred EEEE
Confidence 9986
No 305
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.00016 Score=69.94 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfe 1876 (1924)
+++.|..+|++++...|......+|..+|..+++.|++++|..++++ +...|.+.+.+..++..+++.|++++|+.+|+
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45666666666666666421335566666666666666666666666 55555555555555666666666666666666
Q ss_pred HH
Q 000176 1877 RA 1878 (1924)
Q Consensus 1877 ra 1878 (1924)
++
T Consensus 83 ~~ 84 (84)
T PF12895_consen 83 KA 84 (84)
T ss_dssp HH
T ss_pred cC
Confidence 54
No 306
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.57 E-value=0.073 Score=59.97 Aligned_cols=217 Identities=16% Similarity=0.119 Sum_probs=152.0
Q ss_pred CCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1657 APRTPDEFERLVRSSPN--SSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~--s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~-i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
...+...+...+...+. ....+...+..+...+.+..+...+..++.. .. ......|..+.......+ ..+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~ 112 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL----PNLAEALLNLGLLLEALG--KYE 112 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc----cchHHHHHHHHHHHHHHh--hHH
Confidence 34445556666655555 3677777777788888888888888888853 11 112345666666666666 347
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHH-HHHHhCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLG-LYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~-i~~~~gk~e~A~~~fe~~lk~~~---~~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
.+...+..++...+.. ..+..+.. ++...++++.|...|++++...+ .....+......+... .++.|...+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 113 EALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 7888888888766554 34444444 78888888888888888876433 2444455555555555 88888888888
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
++...+.. ....+...+..+...++++.|...+..++...|.....|......+...+..+.+...+.+++.
T Consensus 193 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 193 ALKLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHhhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88887762 2467888888888888888888888888888887666666655555566778888888888887
No 307
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=97.56 E-value=6.5e-05 Score=90.82 Aligned_cols=76 Identities=22% Similarity=0.276 Sum_probs=70.1
Q ss_pred ccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEeeC
Q 000176 582 EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657 (1924)
Q Consensus 582 ~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~ 657 (1924)
++..|.++.++|+.+.++|+||+||++..|++|+++++..++.+|++.+.+||.+.++-+..|+..+++.+|-+..
T Consensus 665 ~l~~g~vy~~tIt~~rd~G~~V~l~p~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~~g~~~ls~ralL 740 (760)
T KOG1067|consen 665 DLEFGGVYTATITEIRDTGVMVELYPMQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDPRGGIMLSSRALL 740 (760)
T ss_pred ceEeeeEEEEEEeeecccceEEEecCCchhhccchhcccccccChHHHHhhcceeEEEEEeecCccceeehhhhhc
Confidence 4567999999999999999999999999999999999999999999999999999999999999988888876544
No 308
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0014 Score=75.93 Aligned_cols=194 Identities=13% Similarity=0.079 Sum_probs=102.6
Q ss_pred HhcCCCCchHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcC
Q 000176 1652 LLEKDAPRTPDEFERLVRSS---PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1728 (1924)
Q Consensus 1652 ~~~~~~p~a~~~ferll~~~---P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g 1728 (1924)
+...+...|+...|-.+... -++..+|+.+..| .+|++++|..+|+-+........ .+|+.+.--..-.|
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~f--hLgdY~~Al~~Y~~~~~~~~~~~-----el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF--HLGDYEEALNVYTFLMNKDDAPA-----ELGVNLACCKFYLG 105 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH--hhccHHHHHHHHHHHhccCCCCc-----ccchhHHHHHHHHH
Confidence 33444666666555544221 2356666666544 34566666666666554322211 13433322222223
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1729 NPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1729 ~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
- ..+|..+.++|-+..--..+.+.++. +.++-++... |..-+. +..+--+.++...... .+++|.++|.|
T Consensus 106 ~--Y~eA~~~~~ka~k~pL~~RLlfhlah---klndEk~~~~-fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 106 Q--YIEAKSIAEKAPKTPLCIRLLFHLAH---KLNDEKRILT-FHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred H--HHHHHHHHhhCCCChHHHHHHHHHHH---HhCcHHHHHH-HHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 1 24455444444221111122222221 2222222222 111111 1222233444444444 78999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
.|.-+|... .+-...|..+++..-++-+.+++.--|+..|+++-+.+-.+--.+
T Consensus 177 vL~dn~ey~--alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 177 VLQDNPEYI--ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF 230 (557)
T ss_pred HHhcChhhh--hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 999887763 455566777888888999999999999999998766554444443
No 309
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=97.55 E-value=0.00013 Score=88.32 Aligned_cols=108 Identities=18% Similarity=0.361 Sum_probs=78.7
Q ss_pred CCCCCCCEEEEEEEEEeCCeEEE-EEcccccc----ch-hhHhhhhcccCCCcEEEEEEEEEEcce-EEEEEcCCeEEEe
Q 000176 541 KKFKVGAELVFRVLGVKSKRITV-THKKTLVK----SK-LAILSSYAEATDRLITHGWITKIEKHG-CFVRFYNGVQGFA 613 (1924)
Q Consensus 541 ~~f~vG~~vk~rVl~v~~~~l~l-T~K~~Lv~----~~-~~~~~~~~~~~~G~~~~G~V~~i~~~G-~~V~f~~~v~g~l 613 (1924)
..+++|+.++..+-.-+-+|+.+ +.|..+.. .. ..++..|.+ +.|+++.|+|.++.+.| +||++ |++.|||
T Consensus 82 ~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea~L 159 (341)
T TIGR01953 82 PDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEGIL 159 (341)
T ss_pred cccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEEEe
Confidence 35999999998764333333333 33333211 11 123444544 58999999999999988 69999 7899999
Q ss_pred eCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCC--CEEEEEEee
Q 000176 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS--RRINLSFMM 656 (1924)
Q Consensus 614 p~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~--~ri~lS~k~ 656 (1924)
|.+|+. |.+.|++|+.++|.|++++... ..+.||.+.
T Consensus 160 P~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt~ 198 (341)
T TIGR01953 160 PKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRTH 198 (341)
T ss_pred cHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeCc
Confidence 999986 4567999999999999999554 579999864
No 310
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0011 Score=79.76 Aligned_cols=139 Identities=13% Similarity=0.143 Sum_probs=106.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CH
Q 000176 1720 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQ 1798 (1924)
Q Consensus 1720 yl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~ 1798 (1924)
-.|.+.+.+++ ..|...|+||+...+.. ++-+.++.... ..+ -..++++++..+++. .+
T Consensus 214 ~Gn~~fK~gk~--~~A~~~Yerav~~l~~~-----------~~~~~ee~~~~-~~~------k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 214 RGNVLFKEGKF--KLAKKRYERAVSFLEYR-----------RSFDEEEQKKA-EAL------KLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhhHHHhhchH--HHHHHHHHHHHHHhhcc-----------ccCCHHHHHHH-HHH------HHHHhhHHHHHHHhhhhH
Confidence 46666677744 88888888887664411 11111111111 111 234678889999999 99
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHH
Q 000176 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD-LIRGLFER 1877 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~-~ar~lfer 1877 (1924)
.+|.....++|...|.+ ++++++-|+.+...|+++.||..|+++++..|.+.++-..++.+-.+...+. +.+.+|.+
T Consensus 274 ~~Ai~~c~kvLe~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNN--VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 6999999999999999999999999999999999999999988887766554 46888988
Q ss_pred HHh
Q 000176 1878 AIS 1880 (1924)
Q Consensus 1878 al~ 1880 (1924)
++.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 887
No 311
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.53 E-value=0.0011 Score=73.44 Aligned_cols=96 Identities=10% Similarity=-0.033 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1735 VVKVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1735 a~~vferAl~~~~~~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~---~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
+...+.+.++..+.. ..|+.++..+...+++++|...|++++...++ ...+|..++..+... ++++|...|++
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444433332 66777777777777777777777777766543 234677777777777 77777777777
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcC
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNG 1832 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g 1832 (1924)
++...|.. ...+...|.++...|
T Consensus 98 Al~~~~~~--~~~~~~la~i~~~~~ 120 (168)
T CHL00033 98 ALERNPFL--PQALNNMAVICHYRG 120 (168)
T ss_pred HHHhCcCc--HHHHHHHHHHHHHhh
Confidence 77776655 356667777776433
No 312
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.53 E-value=0.0021 Score=71.45 Aligned_cols=100 Identities=12% Similarity=0.030 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~---~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
..|+.++..|...|++++|...|+++++..++ ...+|..++..+... ++++|...|++++...|.. ...+..+|
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ--PSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHH
Confidence 45666677777777777777777777765433 245677777777777 7777777777777776655 46666667
Q ss_pred HHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 000176 1826 ILEFKNGV--------------ADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1826 ~le~~~g~--------------~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.++...|+ +++|..+|++++...|++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 77666655 466777777777777776
No 313
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.50 E-value=0.008 Score=68.76 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1824 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~---~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~-~~~~~~ 1824 (1924)
+.++..+..+.+.|++.+|...|+.+...||. .+.+++.++..+++. +++.|...|++-++.+|.+.++ .++...
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 34455556677889999999999999998864 367788888888888 9999999999999999988654 355555
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHH----------HHHH-------HHHHHHHcCCHHHHHHHHH
Q 000176 1825 AILEFKN-----------GVADRGRSMFEGILSEYPKRTD----------LWSI-------YLDQEIRLGDVDLIRGLFE 1876 (1924)
Q Consensus 1825 A~le~~~-----------g~~e~Ar~lfe~aL~~~Pk~~d----------lw~~-------y~~le~k~gd~~~ar~lfe 1876 (1924)
|...+.. +...+|...|+.++..+|++.. +... -++++.+.|.+..|..-|+
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 5544322 2356889999999999998522 2222 2455667899999999999
Q ss_pred HHHhcCCCchh--HHHHHHHHHHHHHHcCCHHH
Q 000176 1877 RAISLSLPPKK--MKFLFKKYLEYEKSVGEEER 1907 (1924)
Q Consensus 1877 ral~~~~~pk~--~k~lw~~yl~~E~~~G~~~~ 1907 (1924)
.++. ..|.. ....+...+.-..+.|..+.
T Consensus 166 ~v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 166 YVIE--NYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHH--HSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHH--HCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 9998 33322 22334444455555676653
No 314
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.49 E-value=0.0003 Score=65.19 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAIS 1880 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g-d~~~ar~lferal~ 1880 (1924)
..+|...|..++..|++++|...|++++..+|++..+|..++..+.+.| ++++|...|+++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999 79999999999998
No 315
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.49 E-value=0.0003 Score=64.89 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=35.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
++.|++++|..+|++++..+|++.++|..++.++++.|++++|+.+|++++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456667777777777777777767777777777777777777777776666
No 316
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.47 E-value=0.0011 Score=79.67 Aligned_cols=154 Identities=13% Similarity=0.122 Sum_probs=105.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHH
Q 000176 1685 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---KVHLALLGLYER 1761 (1924)
Q Consensus 1685 ~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~---~i~~~l~~i~~~ 1761 (1924)
+...|+++.|.+++.+. ...|. -.-.+.+.+..+ +.+.|.+.++++-+..++. .+..+|.+++.-
T Consensus 112 ~~~~~~~~~AL~~l~~~-------~~lE~---~al~Vqi~L~~~--R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-------GSLEL---LALAVQILLKMN--RPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG 179 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-------TCHHH---HHHHHHHHHHTT---HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcc-------CcccH---HHHHHHHHHHcC--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence 34457766666555443 22332 223334455666 5688888888887776664 556666666655
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH-HHHHH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA-DRGRS 1839 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~-e~Ar~ 1839 (1924)
.+++++|.-+|+.+..+|+.++.++..++...+.+ ++++|.++++.|+...|.+ +.++.+.+.+....|+. +.+..
T Consensus 180 ~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~--~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND--PDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH--HHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHhCCChhHHHH
Confidence 56788888888888888888888888888888888 8888888888888777665 57888888887777776 67777
Q ss_pred HHHHHHHhCCCCH
Q 000176 1840 MFEGILSEYPKRT 1852 (1924)
Q Consensus 1840 lfe~aL~~~Pk~~ 1852 (1924)
.++.+-..+|...
T Consensus 258 ~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 258 YLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHCHHHTTTSH
T ss_pred HHHHHHHhCCCCh
Confidence 8888777888753
No 317
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]
Probab=97.47 E-value=0.00029 Score=75.73 Aligned_cols=75 Identities=24% Similarity=0.458 Sum_probs=63.0
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-C----------CCccCCCCcEEEEEEEEEeCCC-----C
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-S----------PEKEFPIGKLVAGRVLSVEPLS-----K 1430 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~-~----------~~~~f~~G~~V~~kVl~vd~e~-----~ 1430 (1924)
.|++|.|.|+++.++|+||.+| -.+||+|.+++.|.|+. + -+..|.+|+.|++||+.+.... .
T Consensus 81 ~gEVV~GeVv~~~~~G~fV~ig-p~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~~~~ 159 (183)
T COG1095 81 RGEVVEGEVVEVVEFGAFVRIG-PLDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRPRES 159 (183)
T ss_pred cccEEEEEEEEEeecceEEEec-cccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCccccc
Confidence 6899999999999999999999 68999999999998532 1 2337889999999999887655 6
Q ss_pred EEEEEeeccccc
Q 000176 1431 RVEVTLKTSDSR 1442 (1924)
Q Consensus 1431 ri~LSlk~~~~~ 1442 (1924)
+|.+|+|+.-..
T Consensus 160 ~I~lTmrq~~LG 171 (183)
T COG1095 160 KIGLTMRQPGLG 171 (183)
T ss_pred eEEEEeccccCC
Confidence 899999986543
No 318
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.00041 Score=63.42 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=38.9
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1788 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1788 ~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.++..+++. ++++|...|+++++..|.+ ..+|..+|.+++..|++++|+..|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN--PEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555556 6666666666666666654 4666666666666666666666666666666654
No 319
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.46 E-value=0.00033 Score=64.59 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=50.5
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
++. ++++|.++|++++...|.+ ..++..+|.++++.|++++|+.+|++++...|++..+|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 344 7888888888888888876 4788888888888888888888888888888887666665554
No 320
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0035 Score=74.69 Aligned_cols=170 Identities=14% Similarity=0.025 Sum_probs=134.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-- 1749 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-- 1749 (1924)
|.+...-+--+.++.-+++++.|..+.-+.++..+... .-.|++=...+.+-..+.+..-|++|+.+.|+.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~-------~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~ 238 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA-------EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQK 238 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh-------HHHHhcccccccccchHHHHHHHhhhhccChhhhh
Confidence 33344444456666788999999999999998665432 222332222222114588999999999998762
Q ss_pred -----------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1750 -----------KVHLALLGLYERTEQNKLADELLYKMIKKFKH----SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1750 -----------~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~----~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
+.|..-++-..+.|++..|.+.|..++...|. +..+|.+.+....+. +..+|..-..+|++..+
T Consensus 239 sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 239 SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 67888888889999999999999999998864 467788888888888 99999999999999987
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1814 ~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
.. ++.+..-|+.+...++++.|...|+++++....
T Consensus 319 sy--ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 319 SY--IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 66 789999999999999999999999999987655
No 321
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.45 E-value=0.11 Score=58.63 Aligned_cols=223 Identities=18% Similarity=0.137 Sum_probs=154.1
Q ss_pred cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh--cCC-CHHHHHHHHHHHHHhCC
Q 000176 1688 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ--YCD-PKKVHLALLGLYERTEQ 1764 (1924)
Q Consensus 1688 ~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~--~~~-~~~i~~~l~~i~~~~gk 1764 (1924)
...+..+...+..++...+... ....+..........+ ....+...+..++. ..+ ....|..++.++...++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (291)
T COG0457 36 LGELAEALELLEEALELLPNSD---LAGLLLLLALALLKLG--RLEEALELLEKALELELLPNLAEALLNLGLLLEALGK 110 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcccc---chHHHHHHHHHHHHcc--cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh
Confidence 3556666666666665544320 1124444555555566 44777778888875 233 34788888888888888
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHhc-CHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1765 NKLADELLYKMIKKFKHSCKVWLRRVQ-RLLKQ-QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVADRGRSMF 1841 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~~~~~vw~~~a~-~l~~~-~~~~A~~l~~ral~~~p~-~~~~~~~~~~A~le~~~g~~e~Ar~lf 1841 (1924)
+..+...+..+....+.....+..+.. .+... +++.|...|++++...|. ......+...+..+...++++.|...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 889999998888766655455555555 56666 899999999998875552 233456666666677788899999999
Q ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1842 EGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1842 e~aL~~~Pk-~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.+++...|. ....|......+...++++.+...+.+++. ..+.....++.....+. ..|..+.+...+.++++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 191 EKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLL-ELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 999988888 578888888888888888899999998888 55442222333334444 667788888888777654
No 322
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=97.44 E-value=0.00018 Score=87.66 Aligned_cols=106 Identities=16% Similarity=0.296 Sum_probs=77.2
Q ss_pred CCCCCCEEEEEEEEEe-CCeEEEEEccccccchh-----hHhhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeC
Q 000176 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~v~-~~~l~lT~K~~Lv~~~~-----~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~ 615 (1924)
..++|+.++..+-..+ .+....+.|+.+...-. .++..|.+ +.|+++.|+|.++...|+||++ |++.||||.
T Consensus 86 ~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~-k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP~ 163 (362)
T PRK12327 86 AYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSE-REGDIVTGVVQRRDNRFVYVNL-GKIEAVLPP 163 (362)
T ss_pred cccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEEEEEEeCCcEEEEe-CCeEEEecH
Confidence 5889999998775442 23333344444433211 22333321 6899999999999999999999 679999999
Q ss_pred cccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCC--EEEEEEe
Q 000176 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFM 655 (1924)
Q Consensus 616 sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~--ri~lS~k 655 (1924)
+++. |.+.|++|+.++|.|++++.+.+ .+.||..
T Consensus 164 ~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSRt 199 (362)
T PRK12327 164 AEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSRT 199 (362)
T ss_pred HHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEeC
Confidence 8884 45789999999999999996654 5777764
No 323
>PRK11906 transcriptional regulator; Provisional
Probab=97.42 E-value=0.0059 Score=75.33 Aligned_cols=155 Identities=14% Similarity=0.046 Sum_probs=85.2
Q ss_pred HhCCCCH---HHH--HHHHHHHH--HcC---CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 000176 1669 RSSPNSS---FVW--IKYMAFML--SMA---DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1738 (1924)
Q Consensus 1669 ~~~P~s~---~~W--~~y~~~~~--~~~---e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~v 1738 (1924)
..-|.+. ++| -.|+.-.. ..+ ..+.|..+|+||+.+-+...++-...-|.++..+...+..+..
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~------ 315 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE------ 315 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC------
Confidence 3346666 778 55554432 222 5778889999999433333244444567776666553321100
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh
Q 000176 1739 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH 1817 (1924)
Q Consensus 1739 ferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~ 1817 (1924)
......+|.++-++++...+.++.+...++..+.-. +++.|..+|+||+..+|+.
T Consensus 316 ----------------------~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-- 371 (458)
T PRK11906 316 ----------------------LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI-- 371 (458)
T ss_pred ----------------------chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc--
Confidence 000112344444455555555555555555544444 5666666666666666655
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
..+|+..|.+++-.|+.++|+..++++++.+|-+..
T Consensus 372 A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 372 ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 356666666666666666666666666666665543
No 324
>PRK11642 exoribonuclease R; Provisional
Probab=97.37 E-value=0.00047 Score=93.17 Aligned_cols=73 Identities=25% Similarity=0.399 Sum_probs=64.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCC-cEEEEECccCCCcc-cC----------CCCccCCCCcEEEEEEEEEeCCCCEEE
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGY-VE----------SPEKEFPIGKLVAGRVLSVEPLSKRVE 1433 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~-v~g~v~~selsd~~-~~----------~~~~~f~~G~~V~~kVl~vd~e~~ri~ 1433 (1924)
++|+++.|.|++|+++|+||+|... ++|+||+++|.|+| .- +....|++||.|+++|.++|.++++|.
T Consensus 642 ~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rkI~ 721 (813)
T PRK11642 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERKID 721 (813)
T ss_pred cCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCeEE
Confidence 6899999999999999999999875 99999999999763 21 234679999999999999999999999
Q ss_pred EEeec
Q 000176 1434 VTLKT 1438 (1924)
Q Consensus 1434 LSlk~ 1438 (1924)
+++-.
T Consensus 722 f~l~~ 726 (813)
T PRK11642 722 FSLIS 726 (813)
T ss_pred EEEec
Confidence 99853
No 325
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=97.37 E-value=0.00048 Score=63.59 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=67.1
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEee-ccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH-VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h-~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
+.=-.+|+.+. .|+.+.+.|++|.|-+-+++|++. .+|++..++..+.+.+ +|-.+.++|+.+|+++|=|-||.
T Consensus 11 y~~P~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 11 YVFPNINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred EecCCCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 33456899998 899999999999998778999999 9999999999999999 99999999999999999998873
No 326
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.37 E-value=0.065 Score=69.94 Aligned_cols=227 Identities=15% Similarity=0.175 Sum_probs=151.0
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
+-.|-+..+++++.+||...+-.--+-.++++|..++|..+.+ ++...+.. +.. ....+-+.+...+ ..++|.
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~-D~~---tLq~l~~~y~d~~--~~d~~~ 97 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGT-DDL---TLQFLQNVYRDLG--KLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCC-chH---HHHHHHHHHHHHh--hhhHHH
Confidence 7778888999999999988888777788899999999995554 45444433 222 2223334445556 348999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CHH---------HHHHHH
Q 000176 1737 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQE---------GVQAVV 1805 (1924)
Q Consensus 1737 ~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~--~~~---------~A~~l~ 1805 (1924)
.+|+||++.+|..+..+.|...|.+-+.|.+-.++--++-|.+|..+-.+......+++. ..+ -|+..+
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 999999999999877777777777777666666655566667776554444444444443 332 355566
Q ss_pred HHHHHhC-CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 000176 1806 QRALLSL-PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1882 (1924)
Q Consensus 1806 ~ral~~~-p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~--~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~ 1882 (1924)
+..++.- +-....++...+ ......|.+++|...+..-+.. .+-+..+-+.-++++...+++.+.-++-.|++...
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl-~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYL-LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhccCCccchHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 6666554 212112333333 3334567899999999665543 34455667778889999999999888888888832
Q ss_pred CCchhHHHHHHHHHH
Q 000176 1883 LPPKKMKFLFKKYLE 1897 (1924)
Q Consensus 1883 ~~pk~~k~lw~~yl~ 1897 (1924)
+ ++ |+.|.+
T Consensus 257 -~-Dd----y~~~~~ 265 (932)
T KOG2053|consen 257 -N-DD----YKIYTD 265 (932)
T ss_pred -C-cc----hHHHHH
Confidence 2 22 666555
No 327
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.36 E-value=0.00019 Score=81.66 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 000176 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI-RLGDVDLIRGLFER 1877 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~-k~gd~~~ar~lfer 1877 (1924)
.+..-+|.|+...+|++ +.+|..|+..-.+.+.+.....+|..+|+.+|.+.|+|...+++++ -.++++.+|++|.+
T Consensus 90 qk~~f~~~R~tnkff~D--~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~ 167 (435)
T COG5191 90 QKKIFELYRSTNKFFND--PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLK 167 (435)
T ss_pred ceeeEeeehhhhcCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHh
Confidence 34445678888888887 6999999999999999999999999999999999999999888776 57899999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHc
Q 000176 1878 AISLSLPPKKMKFLFKKYLEYEKSV 1902 (1924)
Q Consensus 1878 al~~~~~pk~~k~lw~~yl~~E~~~ 1902 (1924)
++. +.++.+ .+|..|..||..+
T Consensus 168 glR--~N~~~p-~iw~eyfr~El~y 189 (435)
T COG5191 168 GLR--MNSRSP-RIWIEYFRMELMY 189 (435)
T ss_pred hhc--cCCCCc-hHHHHHHHHHHHH
Confidence 999 888888 6999999998765
No 328
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=97.35 E-value=0.0005 Score=91.76 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=63.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEeC-CCcEEEEECccCCCcc-c----------CCCCccCCCCcEEEEEEEEEeCCCCEEE
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGY-V----------ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1433 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~-~~v~g~v~~selsd~~-~----------~~~~~~f~~G~~V~~kVl~vd~e~~ri~ 1433 (1924)
++|+++.|.|++++++|+||.|+ .+++|+||++++.|++ . ++....|++||.|+++|.++|.++++|.
T Consensus 571 ~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~I~ 650 (654)
T TIGR00358 571 KVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRSII 650 (654)
T ss_pred CCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCeEE
Confidence 57999999999999999999998 7899999999999864 1 2234679999999999999999999999
Q ss_pred EEe
Q 000176 1434 VTL 1436 (1924)
Q Consensus 1434 LSl 1436 (1924)
+++
T Consensus 651 f~l 653 (654)
T TIGR00358 651 FEL 653 (654)
T ss_pred EEE
Confidence 886
No 329
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.35 E-value=0.027 Score=66.14 Aligned_cols=160 Identities=13% Similarity=0.032 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV---WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1824 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~v---w~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~-~~~~~~ 1824 (1924)
..++..+.-+...|++++|.+.|+.++..+|.++-. .+.++..+++. +++.|...|++.++..|++..+ .++...
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 445556666777899999999999999988876443 36677777788 9999999999999999988654 356666
Q ss_pred HHHHHHcC---------------CH---HHHHHHHHHHHHhCCCCHH---HHH--------------HHHHHHHHcCCHH
Q 000176 1825 AILEFKNG---------------VA---DRGRSMFEGILSEYPKRTD---LWS--------------IYLDQEIRLGDVD 1869 (1924)
Q Consensus 1825 A~le~~~g---------------~~---e~Ar~lfe~aL~~~Pk~~d---lw~--------------~y~~le~k~gd~~ 1869 (1924)
|...+..+ |. ..|...|+++++.+|+..- ++. .-+.++.+.|.+.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 65433222 22 3566889999999998532 111 2234566789999
Q ss_pred HHHHHHHHHHhcCCCch---hHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPK---KMKFLFKKYLEYEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk---~~k~lw~~yl~~E~~~G~~~~~~~v~ 1912 (1924)
-|..-|+.++. ..|. ..+.+|. ...-....|..+.+..+.
T Consensus 193 AA~~r~~~v~~--~Yp~t~~~~eal~~-l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 193 AVVNRVEQMLR--DYPDTQATRDALPL-MENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHH--HCCCCchHHHHHHH-HHHHHHHcCChHHHHHHH
Confidence 99999999997 2222 2222222 223344567777666544
No 330
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional
Probab=97.34 E-value=0.00073 Score=76.03 Aligned_cols=77 Identities=19% Similarity=0.442 Sum_probs=64.6
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-----------CCCccCCCCcEEEEEEEEEeCCCC----
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLSK---- 1430 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~-----------~~~~~f~~G~~V~~kVl~vd~e~~---- 1430 (1924)
.+|+++.|.|++++++|+||+++ .++|+++.+++.+.+.. +....|++|+.|+++|++++.+++
T Consensus 80 ~~GEVv~g~V~~v~~~Gi~V~lg-~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~~~ 158 (187)
T PRK08563 80 ELQEVVEGEVVEVVEFGAFVRIG-PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRPRG 158 (187)
T ss_pred cCCCEEEEEEEEEEccEEEEEEe-CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCCCC
Confidence 47999999999999999999998 49999999999876432 234578999999999999997543
Q ss_pred -EEEEEeecccccc
Q 000176 1431 -RVEVTLKTSDSRT 1443 (1924)
Q Consensus 1431 -ri~LSlk~~~~~~ 1443 (1924)
+|.+|++..-..+
T Consensus 159 ~~I~ls~~~~~LG~ 172 (187)
T PRK08563 159 SKIGLTMRQPGLGK 172 (187)
T ss_pred CEEEEEecCCCCCc
Confidence 8999999865543
No 331
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.34 E-value=0.012 Score=76.43 Aligned_cols=156 Identities=10% Similarity=0.016 Sum_probs=91.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH--Hc---CCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH-HcCCCCHHH
Q 000176 1661 PDEFERLVRSSPNSSFVWIKYMAFML--SM---ADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN-EYGNPPEEA 1734 (1924)
Q Consensus 1661 ~~~ferll~~~P~s~~~W~~y~~~~~--~~---~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~-~~g~~~~e~ 1734 (1924)
....+++...-|.+..+|-.|+.... .. .+.++|+.+|++|++..|... ....++++..... .+.. ..+
T Consensus 323 ~~e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a---~a~A~la~~~~~~~~~~~-~~~- 397 (517)
T PRK10153 323 ERMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT---YAQAEKALADIVRHSQQP-LDE- 397 (517)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHHhcCC-ccH-
Confidence 33445555667888889988877743 22 348899999999999888432 2222222222111 1110 000
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1735 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1735 a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~--~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
.+...+.+..++++.. .+..+.+|..++..+... ++++|...|++|+..
T Consensus 398 ----------------------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L 449 (517)
T PRK10153 398 ----------------------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL 449 (517)
T ss_pred ----------------------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 0112233333333332 234455666666655555 777777777777777
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1852 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~ 1852 (1924)
.|. ...|..+|.++...|++++|...|++++...|...
T Consensus 450 ~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 450 EMS---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 762 35777777777777777777777777777777644
No 332
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.30 E-value=0.00071 Score=65.48 Aligned_cols=80 Identities=15% Similarity=0.048 Sum_probs=61.5
Q ss_pred hCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000176 1762 TEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1838 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~--~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar 1838 (1924)
.++++.|..+|++++...+. ....|+.+|..+++. ++++|..++++ ++..+. ++.....+|+.+++.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCHHHHH
Confidence 57788888888888887763 466788888888888 88888888888 555543 3577777788888899999998
Q ss_pred HHHHHH
Q 000176 1839 SMFEGI 1844 (1924)
Q Consensus 1839 ~lfe~a 1844 (1924)
..|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888874
No 333
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.28 E-value=0.0068 Score=62.60 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH-KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTDLWSIY 1858 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~-~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk---~~dlw~~y 1858 (1924)
.+++..+..+-.. +.++|..+|++++..-... ....+++.+|..+...|++++|..+|+.++..+|+ +..++..|
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 3566666666666 8888888888888754333 22468888898899999999999999999988888 66778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 000176 1859 LDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1859 ~~le~k~gd~~~ar~lferal~ 1880 (1924)
+..+...|+.+.|...+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888999998888888776
No 334
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.26 E-value=0.0036 Score=75.27 Aligned_cols=146 Identities=12% Similarity=0.140 Sum_probs=107.3
Q ss_pred HHHHHhcCC---CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1739 FQRALQYCD---PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC--KVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1739 ferAl~~~~---~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~--~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
++.|++... ..+.......+|.+.++++.|...++.+-+...++. .+...|..+.... ++.+|..+|+.....+
T Consensus 118 ~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~ 197 (290)
T PF04733_consen 118 YEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF 197 (290)
T ss_dssp HHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc
Confidence 344554443 347777788899999999999999999876543332 2233444444444 8999999999988777
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCchhH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-DLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~-~~ar~lferal~~~~~pk~~ 1888 (1924)
+.. +.++...|..++.+|++++|..+++.++...|++.+.+...+-+....|+. +.+..++..+-. ..|...
T Consensus 198 ~~t--~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 198 GST--PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp --S--HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred CCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 654 688899999999999999999999999999999999999999998888887 667778877665 444443
No 335
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.24 E-value=0.0028 Score=66.18 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhCC-CCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHH
Q 000176 1799 EGVQAVVQRALLSLP-RHKHIKFISQTAILEFKN----GVADRGRSMFEGILSEYPKR---------TDLWSIYLDQEIR 1864 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p-~~~~~~~~~~~A~le~~~----g~~e~Ar~lfe~aL~~~Pk~---------~dlw~~y~~le~k 1864 (1924)
++.++.|+..|.... .++++..|..|..+..+. +.-..-+.+++++++.+.++ ..+|..|+++..
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~- 80 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS- 80 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence 345666777777666 555677777777766532 34556667777777765432 347888887543
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1865 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
.++.+|..+.+.++..+-+ .||..|+.+....|+.+.|..||++|+
T Consensus 81 -----~~~~if~~l~~~~IG~~~A-~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -----DPREIFKFLYSKGIGTKLA-LFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----HHHHHHHHHHHHTTSTTBH-HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCccHHHH-HHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 7888898888877777777 799999999999999999999998875
No 336
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain. RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination.
Probab=97.20 E-value=0.0019 Score=62.80 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=52.2
Q ss_pred CCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCc-----------ccccCCCcEEEEEEEEEecCCCe
Q 000176 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI-----------ETIYRAGEKVKVKILKVDKEKRR 1522 (1924)
Q Consensus 1457 ~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~-----------~~~~~~Gd~Vk~~Vl~id~e~~r 1522 (1924)
+|+++.|.|+++.++|+||.+++ +++|+|.+.+.++..-++ ...+..|+.|++||+.+..+.+.
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~Gp--l~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~ 75 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVGP--LSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDATD 75 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEcC--ceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEccCc
Confidence 58999999999999999999974 899999999976533221 24588999999999999876554
No 337
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.034 Score=64.78 Aligned_cols=206 Identities=17% Similarity=0.139 Sum_probs=116.9
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHH-HHHHHHHcCCCCHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA-YFNLENEYGNPPEE 1733 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWia-yl~le~~~g~~~~e 1733 (1924)
++..+|...|+.+...+...+.+|..++-+..-+|.+.+|..+.++|.++ | +.+. ++++..+++ +++
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-p---------L~~RLlfhlahkln--dEk 138 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-P---------LCIRLLFHLAHKLN--DEK 138 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-h---------HHHHHHHHHHHHhC--cHH
Confidence 44667777777776666667899999999999999999999999999854 3 2222 334444555 223
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1734 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
+ .-.|...++-. .+-.+.++.+...---|++|.++|.+.+...+....+-..++..+.+. -++-+.+++.--|..+
T Consensus 139 ~-~~~fh~~LqD~--~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~ 215 (557)
T KOG3785|consen 139 R-ILTFHSSLQDT--LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF 215 (557)
T ss_pred H-HHHHHHHHhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC
Confidence 2 23333333321 233344455444444566666666666665555444445555555555 5666666666666666
Q ss_pred CCCChHHHHHHHHHHHHH--cCC----------------HHHHHHHH----------HHHHHhCCCC----HHHHHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFK--NGV----------------ADRGRSMF----------EGILSEYPKR----TDLWSIYLD 1860 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~--~g~----------------~e~Ar~lf----------e~aL~~~Pk~----~dlw~~y~~ 1860 (1924)
|++. -+....|...|+ .|+ ++.+..+. |.+|+..|.- +.+...++-
T Consensus 216 pdSt--iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i 293 (557)
T KOG3785|consen 216 PDST--IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII 293 (557)
T ss_pred CCcH--HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence 6653 122222222211 111 11222221 2233444431 234556666
Q ss_pred HHHHcCCHHHHHHHHHH
Q 000176 1861 QEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1861 le~k~gd~~~ar~lfer 1877 (1924)
.+.+++|...|..+...
T Consensus 294 YyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKD 310 (557)
T ss_pred eecccccHHHHHHHHhh
Confidence 77789999999887764
No 338
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.016 Score=62.76 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=81.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 000176 1683 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYER 1761 (1924)
Q Consensus 1683 ~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~ 1761 (1924)
.-++..|++++|..-|.+||..+|.....++..++.........++.+ +.|.+..-+|++.+|.. ......+.+|++
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~--e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW--ESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH--HHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 345677999999999999999999877777777777666666777755 88999999999999976 777788999999
Q ss_pred hCChHHHHHHHHHHHHhcCCCH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSC 1783 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~ 1783 (1924)
..++++|.+-|.+++...|...
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchH
Confidence 9999999999999998766433
No 339
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=97.10 E-value=0.0014 Score=79.90 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=84.5
Q ss_pred ccccCCCCeEeeEEEeecCCCeEEEEecccccchhcc--CCCCcCcc--CCCCEEEEEEEEEecCeEEEEECCCeEEEec
Q 000176 715 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHI--HPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790 (1924)
Q Consensus 715 ~~~~~~G~~i~~vl~id~~~~~i~ls~K~sl~~~~~~--~~~~~~~~--~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~ 790 (1924)
....++|+.+.--+....-++....++|+.+...-.. --.-|+++ +.|++++|+|.++.+.|+||.+ |++.||+|
T Consensus 84 ~~~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP 162 (362)
T PRK12327 84 NPAYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSEREGDIVTGVVQRRDNRFVYVNL-GKIEAVLP 162 (362)
T ss_pred CccccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEEeCCcEEEEe-CCeEEEec
Confidence 3456778887632222222333444555555443221 01124556 7899999999999999999999 66999999
Q ss_pred CCccCcccccCcccCCCCCCEEEEEEEEeeCCCCe--EEEeecccccCCCchhhHHHHHHHH
Q 000176 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR--ITLSLKQSCCSSTDASFMQEHFLLE 850 (1924)
Q Consensus 791 ~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r--~~lSlk~~~~~~~d~~~~~~~~~~~ 850 (1924)
++++. |.+.|++||.++|.|.+++.+.++ +.||. ++|.|+..+|..+
T Consensus 163 ~~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSR-------t~p~~v~~Lfe~E 211 (362)
T PRK12327 163 PAEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSR-------THPGLVKRLFELE 211 (362)
T ss_pred HHHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEe-------CCHHHHHHHHHHh
Confidence 88774 367899999999999999977654 66664 4677888877743
No 340
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0089 Score=72.08 Aligned_cols=141 Identities=21% Similarity=0.214 Sum_probs=107.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000176 1682 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER 1761 (1924)
Q Consensus 1682 ~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~ 1761 (1924)
+.++.+.+++..|...|+||+..++++. .+. .++.. .++.+ ....|+.++..|.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~----------------~~~---~ee~~-~~~~~-----k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRR----------------SFD---EEEQK-KAEAL-----KLACHLNLAACYLK 269 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccc----------------cCC---HHHHH-HHHHH-----HHHHhhHHHHHHHh
Confidence 3467788999999999999997665422 111 11111 11111 12467888999999
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRS 1839 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~-~e~Ar~ 1839 (1924)
.+.|..|.+..++++..-+.+.+..++.++.++.. +++.|+..|++|++..|.++ .+-..++.+-.+... .++.+.
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk--a~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK--AARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999985 566666666554443 456688
Q ss_pred HHHHHHHhCC
Q 000176 1840 MFEGILSEYP 1849 (1924)
Q Consensus 1840 lfe~aL~~~P 1849 (1924)
+|.+++...+
T Consensus 348 ~y~~mF~k~~ 357 (397)
T KOG0543|consen 348 MYANMFAKLA 357 (397)
T ss_pred HHHHHhhccc
Confidence 8888887654
No 341
>PRK05054 exoribonuclease II; Provisional
Probab=97.04 E-value=0.0015 Score=86.78 Aligned_cols=72 Identities=24% Similarity=0.328 Sum_probs=60.4
Q ss_pred CCC--cEEEEEEEEeecceEEEEEecCceeEEeeccccCcc---cc--cC-----c--ccccCCCcEEEEEEEEEecCCC
Q 000176 1456 HVG--DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED---HV--DN-----I--ETIYRAGEKVKVKILKVDKEKR 1521 (1924)
Q Consensus 1456 ~~G--~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~---~~--~~-----~--~~~~~~Gd~Vk~~Vl~id~e~~ 1521 (1924)
++| +.+.|.|+.|++||+||+|++.++.||+|++.+.+. +. .+ + ...|+.||.|+++|.++|.+++
T Consensus 558 ~~G~~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~ 637 (644)
T PRK05054 558 KAGTDTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETR 637 (644)
T ss_pred ccCCCeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccC
Confidence 465 599999999999999999998899999999999763 11 11 1 2479999999999999999999
Q ss_pred eeEEec
Q 000176 1522 RISLGM 1527 (1924)
Q Consensus 1522 ri~lsl 1527 (1924)
+|.+.+
T Consensus 638 ~i~~~~ 643 (644)
T PRK05054 638 SIIARP 643 (644)
T ss_pred eEEEEE
Confidence 998764
No 342
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.01 E-value=0.0029 Score=59.20 Aligned_cols=55 Identities=25% Similarity=0.212 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
++++|.+.+++++...|.+ +.+|..+|.+++..|+++.|+..|+++++..|++.+
T Consensus 10 ~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDD--PELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CHHHHHHHHHHHHHhCccc--chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4444444444444444443 244444444444444444444444444444444433
No 343
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.98 E-value=0.0014 Score=54.96 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
.+|..+|..+...|++++|+.+|+++++.+|++.++|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999999998875
No 344
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.013 Score=67.85 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=83.5
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCC
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGV 1833 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~ 1833 (1924)
+..+|+|..|.+.|..-+++||.+ +..++=+++.++.+ +++.|..+|.++.+.+|++. .++.++++|.....+|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 346788999999999999999753 56667778888888 99999999999999999874 35899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1834 ADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
-+.|+..|+.+++.||+....-.
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHH
Confidence 99999999999999998765433
No 345
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.97 E-value=0.036 Score=59.56 Aligned_cols=138 Identities=16% Similarity=0.069 Sum_probs=103.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Q 000176 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQYC--DPKKVHLALLGLYERTEQNKLADELLYKMIKKFK--HSCKVWLRRVQR 1792 (1924)
Q Consensus 1717 Wiayl~le~~~g~~~~e~a~~vferAl~~~--~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~--~~~~vw~~~a~~ 1792 (1924)
-.++.+-....|. ..+|+..|++|+.=. ++..+.+.+++.....+++..|..+++++....+ .+++-.+.|+..
T Consensus 92 r~rLa~al~elGr--~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 92 RYRLANALAELGR--YHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHhhh--hhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 3455666667784 488888888888643 4457888888888888888888888888887664 567778888888
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHhCCCCH---HHHHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD----RGRSMFEGILSEYPKRT---DLWSIYL 1859 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e----~Ar~lfe~aL~~~Pk~~---dlw~~y~ 1859 (1924)
+..+ ++..|+..|+.++...|.- .....|+.|+.++|+.. +.+.+++++.++.|... .-|...+
T Consensus 170 laa~g~~a~Aesafe~a~~~ypg~---~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A 241 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYYPGP---QARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYRKHHREWIKTA 241 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhCCCH---HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 8888 8899999999999888775 68888899998888544 45566777777666432 2466655
No 346
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=96.93 E-value=0.002 Score=59.67 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=62.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEe-CCCcEEEEE-CccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEe
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIML-SRKLDAKVL-LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l-~~~v~g~v~-~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSl 1436 (1924)
++|+.+. .|+.+.+.|++|.| +-+++|++. .++++..++...++.+ +|....++|+.+|+++|-|.||.
T Consensus 15 ~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 15 NINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred CCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 5889998 88999999999987 446999998 9999999999888888 99999999999999999999984
No 347
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=96.93 E-value=0.016 Score=60.59 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcC----CCHHHHHHHHHHHHHh----CChHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHhcC
Q 000176 1735 VVKVFQRALQYC----DPKKVHLALLGLYERT----EQNKLADELLYKMIKKFKHS---------CKVWLRRVQRLLKQQ 1797 (1924)
Q Consensus 1735 a~~vferAl~~~----~~~~i~~~l~~i~~~~----gk~e~A~~~fe~~lk~~~~~---------~~vw~~~a~~l~~~~ 1797 (1924)
.++.|+..+... ++...|..++....++ +.......++++++..|.+. .++|+.|+. .
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~-----~ 78 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD-----L 78 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT-----T
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH-----H
Confidence 345555555443 2346666666654433 34455556666666655322 334444444 2
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1845 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL 1845 (1924)
.+.++++|+.+....=...+..+|..||.++...|++++|.++|+.+|
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 235666666666554445555666666666666666666666666543
No 348
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.92 E-value=0.0028 Score=73.17 Aligned_cols=107 Identities=16% Similarity=0.059 Sum_probs=96.7
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000176 1754 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832 (1924)
Q Consensus 1754 ~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g 1832 (1924)
.-++-|.+.|+|++|.+.|.+.+..+|.++-.+.+.+..|++. ++..|..-+..|+..+.. .+++|++-++.-+..|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999999999999999 999999999999988643 3799999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1833 ~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
+.++|..-+|++|+..|++..+--.|+++-
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 999999999999999999988888877764
No 349
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0068 Score=65.37 Aligned_cols=75 Identities=24% Similarity=0.389 Sum_probs=63.4
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEec---------CceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCe
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIEN---------TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1522 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~---------~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~r 1522 (1924)
..-++.|++|-|.|+++....+.|++-. +-..|-+|+|++++.+++++++.|++||.|+|+|++.- -.
T Consensus 59 ~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~ 135 (188)
T COG1096 59 PPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATSGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DP 135 (188)
T ss_pred CCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCCCCceeeEEEEecccccccccccccccccEEEEEEEecC---CC
Confidence 4467899999999999999999888741 12566789999999999999999999999999999984 45
Q ss_pred eEEeccc
Q 000176 1523 ISLGMKS 1529 (1924)
Q Consensus 1523 i~lslK~ 1529 (1924)
+.||++.
T Consensus 136 ~~Lst~~ 142 (188)
T COG1096 136 IQLSTKG 142 (188)
T ss_pred eEEEecC
Confidence 7777765
No 350
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.85 E-value=0.0041 Score=58.19 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=56.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1825 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1825 A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
++.+++.++++.|...+++++..+|.+..+|..++.++.+.|++..|+..|++++. ..|+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcH
Confidence 46788899999999999999999999999999999999999999999999999998 555444
No 351
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.84 E-value=0.16 Score=58.47 Aligned_cols=190 Identities=14% Similarity=0.086 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--HH
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--KV 1751 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~--~i 1751 (1924)
....|.+-+.-.++.|++++|...|+......|+++-.++..+-++|.+. ..+ +.+.|...++|-++..|.. --
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y--k~~--~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY--KNG--EYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH--hcc--cHHHHHHHHHHHHHhCCCCCChh
Confidence 45566666666777777777777777777777776655554444444443 334 2366777777777766652 22
Q ss_pred HHHHHHHHHHh----------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHH
Q 000176 1752 HLALLGLYERT----------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFI 1821 (1924)
Q Consensus 1752 ~~~l~~i~~~~----------gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~ 1821 (1924)
|..|+..+... .-..+|..-|+..+.+||.+.= ...|..-+..+-..+ ..-=
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y-------------a~dA~~~i~~~~d~L-----A~~E 170 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY-------------APDAKARIVKLNDAL-----AGHE 170 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc-------------hhhHHHHHHHHHHHH-----HHHH
Confidence 33333222111 1124566677777777775532 122222222221111 1223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDL---WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl---w~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
+..|.+|.+.|.+..|..-|+.++..+|+.... ...+...+.+.|-.+.|.. ..++|.. .+|+.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~-~~~vl~~-N~p~s 237 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK-TAKVLGA-NYPDS 237 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH-HHHHHHh-cCCCC
Confidence 556888889999999999999999998876543 4444455566776666554 3444442 44443
No 352
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.13 Score=57.83 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=93.0
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHc
Q 000176 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH----KHIKFISQTAILEFKN 1831 (1924)
Q Consensus 1757 ~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~----~~~~~~~~~A~le~~~ 1831 (1924)
.+|..+|..+-|...++++-+ .++. ++++|.++|+|++..+... ...+++.+.+.++.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 445555555555555555543 5556 8999999999999877543 2246778888888888
Q ss_pred CCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHHHcC
Q 000176 1832 GVADRGRSMFEGIL------SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS--LPPKKMKFLFKKYLEYEKSVG 1903 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL------~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~--~~pk~~k~lw~~yl~~E~~~G 1903 (1924)
..+++|-.-|.+-. ..+|.....+...+-++.-..|+..|..+|....+.. +.+.+. ......+.+.. .|
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~-r~lenLL~ayd-~g 241 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS-RSLENLLTAYD-EG 241 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH-HHHHHHHHHhc-cC
Confidence 88888877776652 3456665566666666667779999999998866521 233333 23455555443 58
Q ss_pred CHHHHHHHHH
Q 000176 1904 EEERIEYVKQ 1913 (1924)
Q Consensus 1904 ~~~~~~~v~~ 1913 (1924)
|.+.+..|..
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 8888877763
No 353
>PRK15331 chaperone protein SicA; Provisional
Probab=96.80 E-value=0.046 Score=58.82 Aligned_cols=97 Identities=10% Similarity=-0.083 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
.+.++--+.+.|++++|..+|.-++...+.+++.|+.++..+... ++++|...|..|....+.+. ......|+.++.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp--~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY--RPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--CccchHHHHHHH
Confidence 344444566899999999999999988888999999999988888 99999999999998876653 567788999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 000176 1831 NGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.|+.+.|+..|+.++. .|..
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred hCCHHHHHHHHHHHHh-Ccch
Confidence 9999999999999987 3443
No 354
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=96.79 E-value=0.0032 Score=59.75 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=43.6
Q ss_pred CCCcEEEEEEEEeecceEEEEEecC-----------------ceeEEeeccccCcccccC--cccccCCCcEEEEEEEEE
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENT-----------------NLVGLCHVSELSEDHVDN--IETIYRAGEKVKVKILKV 1516 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~-----------------~v~gl~h~sels~~~~~~--~~~~~~~Gd~Vk~~Vl~i 1516 (1924)
++|++|.|+|+++++.-++++|--- ...|++|++++.....+. +.+.|++||.|+|+|+++
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ViSl 82 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVISL 82 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEeeC
Confidence 5899999999999999888887422 568899999997765543 689999999999999974
No 355
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.79 E-value=0.02 Score=60.19 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=67.2
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH-HHHHHHHHH
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTAIL 1827 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~~---~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~-~~~~~~A~l 1827 (1924)
+.-+.-..+.|+|++|.+.|+.+...||. ...+-+.++..+++. ++++|...++|-++.+|.|..+ -+++..|..
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 33334456778888888888888888763 345555666666777 8888888888888888887543 345555554
Q ss_pred HHHcCC---------------HHHHHHHHHHHHHhCCCCH
Q 000176 1828 EFKNGV---------------ADRGRSMFEGILSEYPKRT 1852 (1924)
Q Consensus 1828 e~~~g~---------------~e~Ar~lfe~aL~~~Pk~~ 1852 (1924)
++.... ...|...|+++++.+|++.
T Consensus 94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 544433 5677777777777777754
No 356
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain. RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination.
Probab=96.66 E-value=0.008 Score=58.46 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=51.0
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCC-----------CccCCCCcEEEEEEEEEeCCCC
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP-----------EKEFPIGKLVAGRVLSVEPLSK 1430 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~-----------~~~f~~G~~V~~kVl~vd~e~~ 1430 (1924)
.|+++.|.|+++++.|+||.+| .+++|++...+.+++..+| ...+.+|+.|++||+.+..+.+
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~G-pl~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~ 74 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVG-PLSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDAT 74 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEc-CceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEccC
Confidence 4899999999999999999998 5899999988877654433 2346789999999998875433
No 357
>PRK15331 chaperone protein SicA; Provisional
Probab=96.63 E-value=0.024 Score=60.96 Aligned_cols=94 Identities=5% Similarity=-0.058 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
-.+.+|--++++ ++++|+.+|+-.+...|.+ .+.|..+|..+...++++.|...|..+....++++...+..++.++
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 445666667777 9999999999999888777 5899999999999999999999999999998888888888899999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 000176 1864 RLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~ 1880 (1924)
..|+.+.|+..|+-++.
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999999999998
No 358
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.2 Score=57.31 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=117.1
Q ss_pred HHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000176 1665 ERLVRSSPNSSFVWIKY-MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1743 (1924)
Q Consensus 1665 erll~~~P~s~~~W~~y-~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl 1743 (1924)
|......-++-..|.-. +.+++..++++.|..+..+.. .+. .--+++.+ ..+.. ..+-|++..+++.
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-~lE----~~Al~VqI-----~lk~~--r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-NLE----AAALNVQI-----LLKMH--RFDLAEKELKKMQ 164 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-hHH----HHHHHHHH-----HHHHH--HHHHHHHHHHHHH
Confidence 33333333344355444 445678899999998887732 221 11122222 12223 3477888888888
Q ss_pred hcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH
Q 000176 1744 QYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1819 (1924)
Q Consensus 1744 ~~~~~~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~ 1819 (1924)
+..++. .+-.+|+.+..-.+++.+|.=+|+.+..+++..+.+....+...+.+ ++++|..+++.||...++. +.
T Consensus 165 ~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d--pe 242 (299)
T KOG3081|consen 165 QIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD--PE 242 (299)
T ss_pred ccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC--HH
Confidence 776653 23444445555567799999999999999999999999999999999 9999999999999988776 57
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCC
Q 000176 1820 FISQTAILEFKNGVA-DRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~-e~Ar~lfe~aL~~~Pk~ 1851 (1924)
++.+..-+-...|.. +--...+.++...+|+.
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 888777777777754 33444555666667764
No 359
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.60 E-value=0.064 Score=59.05 Aligned_cols=104 Identities=12% Similarity=-0.061 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
.-|+--|.+|+...|.. .++.-++-.+...|+++.|.+.|...+...|...-..++.+-.+.-. ++.-|.+-|..--+
T Consensus 82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 55788899999999885 78888888888999999999999999998877666666655555555 78888877777777
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRS 1839 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~ 1839 (1924)
..|.+..-.+|..+- .+.-++..|++
T Consensus 162 ~D~~DPfR~LWLYl~---E~k~dP~~A~t 187 (297)
T COG4785 162 DDPNDPFRSLWLYLN---EQKLDPKQAKT 187 (297)
T ss_pred cCCCChHHHHHHHHH---HhhCCHHHHHH
Confidence 777775444554432 23335555554
No 360
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.57 E-value=0.72 Score=55.22 Aligned_cols=217 Identities=13% Similarity=0.060 Sum_probs=155.6
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CcchhhHHHHHH-HHHHHHHHcCCCCHH
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN-IREENEKLNIWV-AYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~-~~ee~ekl~lWi-ayl~le~~~g~~~~e 1733 (1924)
..+.++..-+++-..-|.-...|...+....+.|++|.|.++.+......- .+...++...-+ .-=.++.... +..
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda--dp~ 246 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA--DPA 246 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC--ChH
Confidence 345555666677677788888888888888899999999888876654221 122333321111 1111222233 458
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHH--HH
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRA--LL 1810 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ra--l~ 1810 (1924)
.|++....|++..|+. ..-..-+..|.+.|+.-++-.+++++-+.+| .+.+|..|...- --+.+..-++|+ |.
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~lY~~ar---~gdta~dRlkRa~~L~ 322 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIALLYVRAR---SGDTALDRLKRAKKLE 322 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHHHHHHhc---CCCcHHHHHHHHHHHH
Confidence 8999999999999886 6666677788899999999999999998874 789998886532 233344444443 44
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-GDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~-gd~~~ar~lferal~ 1880 (1924)
++.. ++.......++.-+.-|++-.||+--|.+.+..|. ..++..+++.+... ||..++|..+-+++.
T Consensus 323 slk~-nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 323 SLKP-NNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hcCc-cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4432 23566777777777889999999999999988886 35777889988865 999999999999997
No 361
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.53 E-value=0.0064 Score=74.99 Aligned_cols=72 Identities=28% Similarity=0.553 Sum_probs=63.6
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
.+.++..|..+.|+|.+|..||+||+|.. .+.||+|.++++.. ..|.+||.+-+.+..+.++++.|+|-...
T Consensus 116 ~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~-~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~ 187 (715)
T COG1107 116 TMEDVEAGKYYKGIVSRVEKYGVFVELNS-HVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVG 187 (715)
T ss_pred chhhcccceeeeccccchhhhcceeecCh-hhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecC
Confidence 47899999999999999999999999975 89999999999873 24899999999999999998998875433
No 362
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=96.51 E-value=0.011 Score=65.36 Aligned_cols=77 Identities=14% Similarity=0.238 Sum_probs=59.9
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc--c----------CcccccCCCcEEEEEEEEEecCC--C
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--D----------NIETIYRAGEKVKVKILKVDKEK--R 1521 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~--~----------~~~~~~~~Gd~Vk~~Vl~id~e~--~ 1521 (1924)
-.|++++|.|+++.++|+||.+++ +++++|.+.|.+... . +-...+..|+.|++||+.+..+. -
T Consensus 80 f~gEVv~g~V~~v~~~G~~v~~Gp--~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~~ 157 (176)
T PTZ00162 80 FKDEVLDAIVTDVNKLGFFAQAGP--LKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDASNL 157 (176)
T ss_pred CCCCEEEEEEEEEecceEEEEeeC--eEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCCCc
Confidence 468999999999999999999975 779999999975421 1 11346889999999998876543 3
Q ss_pred eeEEeccccccCC
Q 000176 1522 RISLGMKSSYFKN 1534 (1924)
Q Consensus 1522 ri~lslK~s~~~~ 1534 (1924)
++..+||+.|...
T Consensus 158 ~~i~T~~~~~LG~ 170 (176)
T PTZ00162 158 FAIATINSDYLGP 170 (176)
T ss_pred EEEEEecCCCcCc
Confidence 4666888877744
No 363
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.48 E-value=0.046 Score=56.55 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAI 1826 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~---~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~ 1826 (1924)
++.++..+...|+.++|..+|++++..-. .-..+|+.++..+... ++++|..+|+.++..+|... +..+...+|.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 34444444444445555555554444211 1133444444444444 55555555555555444411 1133444444
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 000176 1827 LEFKNGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1827 le~~~g~~e~Ar~lfe~aL~ 1846 (1924)
.++..|+.++|.+++-.++.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 44555555555555544443
No 364
>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.0022 Score=71.43 Aligned_cols=74 Identities=30% Similarity=0.534 Sum_probs=69.4
Q ss_pred CCCcEEEEEEEEeecceEEEEEecC-ceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
.++++|-+.|+.|.+.|+||.|-.- ++.|++-.||||..++..+.++.++|-.-.|.|+.+|.++|-|-||.+.
T Consensus 15 ev~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrr 89 (304)
T KOG2916|consen 15 EVEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRR 89 (304)
T ss_pred CcccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhcc
Confidence 5899999999999999999998533 8999999999999999999999999999999999999999999999766
No 365
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.40 E-value=0.016 Score=71.62 Aligned_cols=155 Identities=19% Similarity=0.308 Sum_probs=105.6
Q ss_pred CCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000176 754 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1924)
Q Consensus 754 ~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~ 833 (1924)
.+++|+..|..++|.|.++..||+||++...+.||+|.+.++.. ..|.+|+.+.+.|..+-++++.+.+-....
T Consensus 115 c~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~~ 188 (715)
T COG1107 115 CTMEDVEAGKYYKGIVSRVEKYGVFVELNSHVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVGL 188 (715)
T ss_pred cchhhcccceeeeccccchhhhcceeecChhhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecCC
Confidence 46889999999999999999999999999999999999999852 257999999999999999988887766554
Q ss_pred ccCCCchhhHHHHHHHHH--HHHHhhcccCCCccccccccccCccEE--EEEEEEEecc-ee-EEEeccCCceeEEEeee
Q 000176 834 CCSSTDASFMQEHFLLEE--KIAMLQSSKHNGSELKWVEGFIIGSVI--EGKVHESNDF-GV-VVSFEEHSDVYGFITHH 907 (1924)
Q Consensus 834 ~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vG~~v--~g~V~~i~~~-g~-~v~l~~~~~v~g~i~~~ 907 (1924)
.... ..++-.+.. .+.. +.+ .+|+.| .|+|+.++-+ |- +|++.+. +|++...
T Consensus 189 ~~Y~-----~~~~~ke~~r~~i~~-------------id~-~ig~tV~I~GeV~qikqT~GPTVFtltDe---tg~i~aA 246 (715)
T COG1107 189 DRYR-----EVQVEKELPRTLIDD-------------LDE-MIGKTVRIEGEVTQIKQTSGPTVFTLTDE---TGAIWAA 246 (715)
T ss_pred ccch-----hhhhhhhcccccHHH-------------HHh-hcCceEEEEEEEEEEEEcCCCEEEEEecC---CCceehh
Confidence 3211 000001000 0111 122 567655 5889998875 43 4777753 4555444
Q ss_pred ecC--Cc----ccccCCeEEEEEEEeeccccEEEEe
Q 000176 908 QLA--GA----TVESGSVIQAAILDVAKAERLVDLS 937 (1924)
Q Consensus 908 ~l~--~~----~~~~G~~v~~~Vl~vd~~~~~v~ls 937 (1924)
-+. +. .+++|+-|.. +=.++...+.+.+-
T Consensus 247 AFe~aGvRAyP~IevGdiV~V-iG~V~~r~g~lQiE 281 (715)
T COG1107 247 AFEEAGVRAYPEIEVGDIVEV-IGEVTRRDGRLQIE 281 (715)
T ss_pred hhccCCcccCCCCCCCceEEE-EEEEeecCCcEEEe
Confidence 332 21 5788888764 33456666666553
No 366
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.37 E-value=0.32 Score=56.02 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH-HHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK-FISQTAI 1826 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~---~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~-~~~~~A~ 1826 (1924)
|+.-+.-..+.|++++|...|+.+.+.+| -..++-+..+..+++. +++.|....+|-+..+|.+..++ +++.-+.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 33333444566666666666666666654 2345555555555566 66666666666666666665432 1111111
Q ss_pred HHH-----HcCC---HHHHHHHHHHHHHhCCCCH---H--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1827 LEF-----KNGV---ADRGRSMFEGILSEYPKRT---D--------------LWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1827 le~-----~~g~---~e~Ar~lfe~aL~~~Pk~~---d--------------lw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
..+ ...| ..+|..-|+..++.+|++. | .=..-+.++.+.|.+..|..-|++++..
T Consensus 117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 117 SYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 122 1122 2344455556666666631 0 1234577888999999999999999983
Q ss_pred CCCch--hHHHHHHHHHHHHHHcCCHHHHH
Q 000176 1882 SLPPK--KMKFLFKKYLEYEKSVGEEERIE 1909 (1924)
Q Consensus 1882 ~~~pk--~~k~lw~~yl~~E~~~G~~~~~~ 1909 (1924)
.+. ....-...|.......|-.+.+.
T Consensus 197 --y~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 197 --YPDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred --cccccchHHHHHHHHHHHHHhCChHHHH
Confidence 222 12222333334444466554444
No 367
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=96.34 E-value=0.014 Score=52.64 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=37.2
Q ss_pred CCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEe
Q 000176 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1924)
Q Consensus 585 ~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k 655 (1924)
+|++....|+.+.++|+|++..++-.-|||.+++. ..+++|+.|.|.|.. |. ++|+.+|++
T Consensus 1 iG~~~~L~V~~~~~~g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~VFvY~-D~-~~rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEFGYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEVFVYL-DK-EGRLVATTK 61 (61)
T ss_dssp --------EEEE-SSEEEEEETT-EEEEEEGGG--------------TTSEEEEEEEE--T-TS-EEEE--
T ss_pred CCCCcceEEEEEeCCEEEEECCCCCEEEechHHcC--------CCCCCCCEEEEEEEE-CC-CCCEEEecC
Confidence 37888899999999999999877799999999985 248899999999986 54 458888874
No 368
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.32 E-value=0.062 Score=56.60 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 000176 1781 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1854 (1924)
Q Consensus 1781 ~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl 1854 (1924)
.++..|+.-|.-.++. ++++|.+.|+.....+|.... .++.+.++..+++.++++.|++.+++.++.+|.+..+
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3566677778888888 999999999999999998643 3678888888999999999999999999999998664
No 369
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=96.31 E-value=0.0079 Score=79.90 Aligned_cols=71 Identities=18% Similarity=0.333 Sum_probs=58.7
Q ss_pred CCC--cEEEEEEEEeecceEEEEEecCceeEEeeccccCc--ccc---cC-----c--ccccCCCcEEEEEEEEEecCCC
Q 000176 1456 HVG--DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE--DHV---DN-----I--ETIYRAGEKVKVKILKVDKEKR 1521 (1924)
Q Consensus 1456 ~~G--~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~--~~~---~~-----~--~~~~~~Gd~Vk~~Vl~id~e~~ 1521 (1924)
++| +.+.|.|..+..||+||+|...++.|++|++.+.+ +.. .+ + ...|+.||.|+++|.++|.+++
T Consensus 554 ~~g~~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~ 633 (639)
T TIGR02062 554 KAAKNTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETR 633 (639)
T ss_pred ccCCCcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccC
Confidence 564 58999999999999999998779999999999976 211 11 1 1269999999999999999999
Q ss_pred eeEEe
Q 000176 1522 RISLG 1526 (1924)
Q Consensus 1522 ri~ls 1526 (1924)
+|.+.
T Consensus 634 ~i~~~ 638 (639)
T TIGR02062 634 SIIAR 638 (639)
T ss_pred cEeee
Confidence 98763
No 370
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.28 E-value=0.06 Score=54.64 Aligned_cols=91 Identities=19% Similarity=0.073 Sum_probs=57.2
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC--ChHHHHHHHHHHHHHcCCH
Q 000176 1758 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKNGVA 1834 (1924)
Q Consensus 1758 i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~--~~~~~~~~~A~le~~~g~~ 1834 (1924)
.+...|+.+.|.+.|.+++...|..+.+|.+.++.+.-+ +.++|.+-+.+|+...... .....+.+-|.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344566666666666666666666666666666666666 6666666666666654332 2235566666666666766
Q ss_pred HHHHHHHHHHHHhC
Q 000176 1835 DRGRSMFEGILSEY 1848 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~~ 1848 (1924)
+.||.-|+.+-+.-
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777777665443
No 371
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=96.26 E-value=0.021 Score=64.36 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=65.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc----cCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY----VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~----~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
++||.|=|.|..+...+-.|+|+.-..|++|++++.+.. ..+.+.+|.+||.|.++|..+|+ .+.+.|++|..
T Consensus 63 ~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~-~~~~~L~~k~~ 139 (239)
T COG1097 63 EVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDFLRRKFENAEKDLRPFLNVGDLVYAKVVDVDR-DGEVELTLKDE 139 (239)
T ss_pred CCCCEEEEEEEEEcccceEEEcCCccceEeehhhhhcccccccccccccccccCCEEEEEEEEccC-CCceEEEeecC
Confidence 689999999999999999999998899999999996654 24678899999999999999994 88899999653
No 372
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.24 E-value=0.043 Score=63.55 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=79.6
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~---~dlw~~y~~le~k~gd 1867 (1924)
++.. ++..|.+.|..-++.+|... ..++++-+++.+|.+|+++.|-.+|.++.+.+|+. .|...+++..+.+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 4444 89999999999999999874 34788889999999999999999999999999864 6889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 000176 1868 VDLIRGLFERAIS 1880 (1924)
Q Consensus 1868 ~~~ar~lferal~ 1880 (1924)
.+.|+..|+.++.
T Consensus 231 ~d~A~atl~qv~k 243 (262)
T COG1729 231 TDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999998
No 373
>COG0557 VacB Exoribonuclease R [Transcription]
Probab=96.24 E-value=0.0087 Score=80.95 Aligned_cols=76 Identities=33% Similarity=0.625 Sum_probs=65.6
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCcEEEEEEEEEecCC
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1520 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~-----------~~~~~~~~~Gd~Vk~~Vl~id~e~ 1520 (1924)
+..-++|+.+.|.|.+|..||+||.|.+.+++|++|++.+.+.+. +.....|+.||.|++++.+++...
T Consensus 617 ~m~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~ 696 (706)
T COG0557 617 YMKKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDE 696 (706)
T ss_pred HHHHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEcccc
Confidence 456689999999999999999999998878999999999996432 223457999999999999999999
Q ss_pred CeeEEec
Q 000176 1521 RRISLGM 1527 (1924)
Q Consensus 1521 ~ri~lsl 1527 (1924)
++|.+++
T Consensus 697 ~~i~~~~ 703 (706)
T COG0557 697 RKIDFEL 703 (706)
T ss_pred cceEEEe
Confidence 9998875
No 374
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.22 E-value=0.041 Score=59.82 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
+|.+.+..++++ +.+.|..-..+||...|.+. .++.+.|.+|.+...++.|.+-|.+++..+|.+..+....+.+.
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~--kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELNPTYE--KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 344556666666 77778888888888887763 67777788888888888888888888888887766555544443
No 375
>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]
Probab=96.19 E-value=0.0043 Score=81.78 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=69.5
Q ss_pred ccCCCCEEEEEEEEEecCe---EEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000176 758 HIHPNSVVHGYVCNIIETG---CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G---~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~ 834 (1924)
.+.+|.++.+.|++++..- |-|++.+|++|++|.+.+|+..+.+|...+++||+|.|+|+++|.++=.+.||++.+.
T Consensus 982 t~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~sd 1061 (1299)
T KOG1856|consen 982 TFYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTSD 1061 (1299)
T ss_pred HhccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhHH
Confidence 3678999999999998765 5678999999999999999999999999999999999999999988777788888775
Q ss_pred c
Q 000176 835 C 835 (1924)
Q Consensus 835 ~ 835 (1924)
.
T Consensus 1062 l 1062 (1299)
T KOG1856|consen 1062 L 1062 (1299)
T ss_pred h
Confidence 4
No 376
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.14 E-value=0.013 Score=49.00 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1791 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~ 1791 (1924)
.+|..++..|.+.|++++|.++|+++++.+|+++.+|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788888888888888888888888888888888887764
No 377
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.11 E-value=0.038 Score=68.39 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTAILEFKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~-~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
|+.+..|++++..|+.. ++++|...|++||...|.+... .+|++.|..|..+|++++|...|++++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 56788888888888888 8888888888888888876422 458888888888888888888888888763
No 378
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=96.10 E-value=0.031 Score=53.78 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=61.5
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
++||.|=|.|+.++..+.+|+|+....|.+|..++... .+..+..|++|++|-|+|.++++. ...+||...+
T Consensus 5 ~~gD~VIG~V~~~~~~~~~VdI~s~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~~-~~~eLtc~~~ 76 (86)
T cd05790 5 AKGDHVIGIVVAKAGDFFKVDIGGSEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANRD-MEPELSCVDS 76 (86)
T ss_pred CCCCEEEEEEEEEcCCeEEEEcCCCcceEechHHcccc-cccccccCCCCCEEEEEEEecCCC-CCeEEEEeCC
Confidence 58999999999999999999999889999999886543 344567799999999999999964 5688888764
No 379
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.00 E-value=0.11 Score=64.42 Aligned_cols=62 Identities=8% Similarity=-0.071 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV---WLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~v---w~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
..|+.++..|...|+|++|...|++++...|++... |++.+..|..+ ++++|.+.|++|+..
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999988854 99999999999 999999999999986
No 380
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=95.94 E-value=0.019 Score=54.57 Aligned_cols=60 Identities=18% Similarity=0.347 Sum_probs=41.4
Q ss_pred CCCCEEEEEEEEEecCcCeEEEEe------------------CCceEEEEecccccccccCC--CCCCCCCCCEEEEEEE
Q 000176 1258 HEGDIVGGRISKILSGVGGLVVQI------------------GPHLYGRVHFTELKNICVSD--PLSGYDEGQFVKCKVL 1317 (1924)
Q Consensus 1258 ~~G~~v~g~V~~v~~~~~g~~V~l------------------~~~~~G~v~~selsd~~~~~--p~~~~~~G~~v~~~Vl 1317 (1924)
++|++|.|+|+++++. .++++| +....|.++..|+....... +.+.|++|+.|+|+|+
T Consensus 3 ~vGdiV~~rVtrv~~~--~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~Vi 80 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPR--QAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVI 80 (82)
T ss_dssp -TT-EEEEEEEEE-SS--EEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEE
T ss_pred CCCCEEEEEEEEEecc--EEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEe
Confidence 3899999999999998 888765 23578899999987755544 5788999999999999
Q ss_pred EE
Q 000176 1318 EI 1319 (1924)
Q Consensus 1318 ~v 1319 (1924)
+.
T Consensus 81 Sl 82 (82)
T PF10447_consen 81 SL 82 (82)
T ss_dssp EE
T ss_pred eC
Confidence 74
No 381
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=1 Score=50.66 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCCh----
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKH---- 1817 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~------~~~vw~~~a~~l~~~--~~~~A~~l~~ral~~~p~~~~---- 1817 (1924)
+.|....+.|.+. +.++|...+++++.+|.+ ..+-+...+.+|..- ++++|...|+.|-.-+.....
T Consensus 75 t~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 75 TTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 4555555555433 677777777777766632 233445666666655 788888888888776654322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHH------HHHHcCCHHHHHHHHHHHHh
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL-WSIYLD------QEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl-w~~y~~------le~k~gd~~~ar~lferal~ 1880 (1924)
-+.+++.|++-.+.+++.+|..+||++.+..-++.-+ |..-.- .++-..|.-.++..+++...
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 2567777887778888888888888887776554433 433221 22223566666666666665
No 382
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.88 E-value=0.087 Score=53.52 Aligned_cols=90 Identities=19% Similarity=0.104 Sum_probs=77.6
Q ss_pred HHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 000176 1790 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT----DLWSIYLDQEIR 1864 (1924)
Q Consensus 1790 a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~----dlw~~y~~le~k 1864 (1924)
+-.+... +.+.|.+.|.++|..+|.+. .+|.+-||.+.-+|+.+.|..-++++|.....+. +.+.+-+-+|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~ra--SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERA--SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccch--HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 4445555 99999999999999999984 8999999999999999999999999999865443 356666778889
Q ss_pred cCCHHHHHHHHHHHHhc
Q 000176 1865 LGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~~ 1881 (1924)
.|+-+.||.-|++|-..
T Consensus 128 ~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQL 144 (175)
T ss_pred hCchHHHHHhHHHHHHh
Confidence 99999999999999983
No 383
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.46 Score=54.51 Aligned_cols=147 Identities=12% Similarity=0.093 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQEGVQAVVQ 1806 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-----~~~~A~~l~~ 1806 (1924)
.+.|.....+ -...+.+..-..++.+..+.+.|....++|.... .-.....+|+.+... ++..|.-+|+
T Consensus 124 ~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~ggek~qdAfyife 197 (299)
T KOG3081|consen 124 FDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGEKIQDAFYIFE 197 (299)
T ss_pred hHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3555544433 2223445555556777888888888888888653 233333344444332 7899999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCc
Q 000176 1807 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-IRGLFERAISLSLPP 1885 (1924)
Q Consensus 1807 ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~-ar~lferal~~~~~p 1885 (1924)
..-..+|.. +.+....|.+.+.+|++++|.++++.+|..+++.++.....+-.-...|.... ......+... ..|
T Consensus 198 E~s~k~~~T--~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p 273 (299)
T KOG3081|consen 198 ELSEKTPPT--PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL--SHP 273 (299)
T ss_pred HHhcccCCC--hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--cCC
Confidence 998865443 47888889999999999999999999999999999988888877777775433 3334444333 455
Q ss_pred hhH
Q 000176 1886 KKM 1888 (1924)
Q Consensus 1886 k~~ 1888 (1924)
...
T Consensus 274 ~h~ 276 (299)
T KOG3081|consen 274 EHP 276 (299)
T ss_pred cch
Confidence 443
No 384
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.84 E-value=0.27 Score=58.04 Aligned_cols=161 Identities=15% Similarity=0.076 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC------CC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------DP-------KKVHLALLGLYERTEQNKLADELLYKMIKKFK 1780 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~------~~-------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~ 1780 (1924)
...+.+|+|++..+.. ..-|.+++++. |. ...+..+++.+.-.+.++++++.|+.+.+.-.
T Consensus 80 ~~~~ea~lnlar~~e~------l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~ 153 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEK------LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAH 153 (518)
T ss_pred HHHHHHHHHHHHHHHH------HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 4567788888665542 22244444332 21 25666677777777888888888888886532
Q ss_pred --C----CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1781 --H----SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH--------KHIKFISQTAILEFKNGVADRGRSMFEGIL 1845 (1924)
Q Consensus 1781 --~----~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~--------~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL 1845 (1924)
+ ...++..++.++.+. ++++|.-...+|....... .+.-+.+.+|-.+...|..-.|.+..+.+.
T Consensus 154 ~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 154 NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 1 245677888888777 8888887777776654221 112344555555667777777777777775
Q ss_pred HhC---CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1846 SEY---PKR---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1846 ~~~---Pk~---~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+.. .++ ..-...++|+|...||.++|-.-||.|..
T Consensus 234 klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 234 KLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 542 232 23466788888888888888888887775
No 385
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=95.83 E-value=0.079 Score=54.88 Aligned_cols=106 Identities=14% Similarity=0.221 Sum_probs=67.4
Q ss_pred HHHHHHHH-HhCCCCChHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCC
Q 000176 1802 QAVVQRAL-LSLPRHKHIKFISQTAILEFK---NG-VADRGRSMFEGILSEY---------PKRTDLWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1802 ~~l~~ral-~~~p~~~~~~~~~~~A~le~~---~g-~~e~Ar~lfe~aL~~~---------Pk~~dlw~~y~~le~k~gd 1867 (1924)
++.|+..| .....++.+..|..|..+... .| .-..-..++|++++.+ |.-..+|..|+++- +
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~- 80 (125)
T smart00777 5 RQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---D- 80 (125)
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---C-
Confidence 44455444 333333445566666555442 12 2223445555555443 33345899999873 3
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1914 (1924)
Q Consensus 1868 ~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~r 1914 (1924)
..+.+|.-+....+-.+-+ .||..|+.+.+..|+...|..+|++
T Consensus 81 --dp~~if~~L~~~~IG~~~A-lfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 81 --EPRELFQFLYSKGIGTKLA-LFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred --CHHHHHHHHHHCCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3677888888877776667 7999999999999999999999875
No 386
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=95.81 E-value=0.019 Score=72.02 Aligned_cols=71 Identities=23% Similarity=0.397 Sum_probs=56.0
Q ss_pred ccCCCcEEEEEEEEeecc--eEEEEEecCceeEEeeccccCcc------------cccCcccccCCCcEEEEEEEEEecC
Q 000176 1454 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSED------------HVDNIETIYRAGEKVKVKILKVDKE 1519 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~--GvFV~l~~~~v~gl~h~sels~~------------~~~~~~~~~~~Gd~Vk~~Vl~id~e 1519 (1924)
...+|+++.|+|++|.++ |+||+|+. +-.||+|++++.+. ...+..+.+++||.|.|.|++--..
T Consensus 22 ~~~vGnIY~GrV~~i~p~l~aAFVdiG~-~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~Ke~~~ 100 (414)
T TIGR00757 22 RQLKGNIYKGRVTRILPSLQAAFVDIGL-EKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVKEPRG 100 (414)
T ss_pred cCCCCCEEEEEEeeecCCCceEEEEcCC-CceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEeeCCcC
Confidence 456899999999999998 99999975 78999999998653 2334566799999999999994333
Q ss_pred CCeeEE
Q 000176 1520 KRRISL 1525 (1924)
Q Consensus 1520 ~~ri~l 1525 (1924)
.+.-.|
T Consensus 101 ~Kgp~l 106 (414)
T TIGR00757 101 NKGARL 106 (414)
T ss_pred CCCCeE
Confidence 333333
No 387
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=95.80 E-value=0.047 Score=52.55 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=58.9
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeecc
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~ 1336 (1924)
+||.|-|+|+.+... +..|+|+....|++|..++... +......|++|+.|.|+|..+++. ....||...+
T Consensus 6 ~gD~VIG~V~~~~~~--~~~VdI~s~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~~----~~~eLtc~~~ 76 (86)
T cd05790 6 KGDHVIGIVVAKAGD--FFKVDIGGSEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANRD----MEPELSCVDS 76 (86)
T ss_pred CCCEEEEEEEEEcCC--eEEEEcCCCcceEechHHcccc-cccccccCCCCCEEEEEEEecCCC----CCeEEEEeCC
Confidence 899999999999988 9999999989999999877433 333456789999999999999873 4578888654
No 388
>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=95.78 E-value=0.011 Score=66.16 Aligned_cols=90 Identities=23% Similarity=0.301 Sum_probs=77.3
Q ss_pred CCCEEEEEEEEEecCeEEEEE--CCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccccCCC
Q 000176 761 PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838 (1924)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f--~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~~~ 838 (1924)
+++++.+.|.+|.+.|++|.+ ||++.|++..|++|..++...+...++|-.=.|.|+.+|.+++=|-||.+...+ .
T Consensus 16 v~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrrVs~--e 93 (304)
T KOG2916|consen 16 VEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRRVSP--E 93 (304)
T ss_pred cccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhccCCH--H
Confidence 589999999999999999998 689999999999999999999999999999999999999999999999987643 2
Q ss_pred chhhHHHHHHHHHH
Q 000176 839 DASFMQEHFLLEEK 852 (1924)
Q Consensus 839 d~~~~~~~~~~~~~ 852 (1924)
|..-+.+-|+..++
T Consensus 94 d~~kC~Er~~ksK~ 107 (304)
T KOG2916|consen 94 DKEKCEERFAKSKL 107 (304)
T ss_pred HHHHHHHHHHHhHH
Confidence 44444444544443
No 389
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=95.77 E-value=0.014 Score=44.94 Aligned_cols=32 Identities=34% Similarity=0.733 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
|+.++|+.+|++++...|...++|..|++++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 46777888888888888888888888887764
No 390
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.73 E-value=2.5 Score=56.03 Aligned_cols=218 Identities=13% Similarity=0.080 Sum_probs=137.3
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCC
Q 000176 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD--PKKVHLALLGLYERTEQ 1764 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~--~~~i~~~l~~i~~~~gk 1764 (1924)
..+++.+|..-.++.++..|... ...+.-+|.- .+.|.. ++|...++ |+...+ +......+-.+|.+.++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~---~a~vLkaLsl--~r~gk~--~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL---YAKVLKALSL--FRLGKG--DEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH---HHHHHHHHHH--HHhcCc--hhHHHHHh-hhccCCCCchHHHHHHHHHHHHHhh
Confidence 45778899999999999988543 2334445443 355643 66664443 443322 34667777789999999
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC---------H
Q 000176 1765 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV---------A 1834 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~---------~ 1834 (1924)
+++|..+|++++.+||. .+..+.|-..+.+. .+.+-+++==+.-+.+|.+.+ -+|.-........-. .
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y-yfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY-YFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc-hHHHHHHHHHHhccCCcccccchhH
Confidence 99999999999999987 66666666666655 444433333333347787763 566655544442222 3
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1835 DRGRSMFEGILSEYPK--RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~~Pk--~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~ 1912 (1924)
.-|+.++++.+....+ ...-...|......+|.+++|..++.+-+...+++-+. .+-.+-+++-...+...+.-++.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~-~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANL-YLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHhcChHHHHHHH
Confidence 4577777777766521 22235556677778899999999997766655555444 45455556666666655544443
Q ss_pred HHH
Q 000176 1913 QKA 1915 (1924)
Q Consensus 1913 ~rA 1915 (1924)
.|+
T Consensus 250 ~~L 252 (932)
T KOG2053|consen 250 SRL 252 (932)
T ss_pred HHH
Confidence 333
No 391
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=95.71 E-value=0.032 Score=67.68 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=74.3
Q ss_pred CCCCCCEEEEEEEEEe-CCeEEEEEccccccc-----hhhHhhhhcccCCCcEEEEEEEEEEcc-eEEEEEcCCeEEEee
Q 000176 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKS-----KLAILSSYAEATDRLITHGWITKIEKH-GCFVRFYNGVQGFAP 614 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~v~-~~~l~lT~K~~Lv~~-----~~~~~~~~~~~~~G~~~~G~V~~i~~~-G~~V~f~~~v~g~lp 614 (1924)
.+++|+.+..-+---+ .+...-|.|..+... ...+...|.+ +.|+++.|+|.++... ++||++ |++.|+||
T Consensus 90 ~~~vGd~i~~~i~~~~fgRiaaq~akq~i~Qkir~~er~~i~~ey~~-~~Geiv~g~V~r~~~~~~i~vdl-g~~ea~LP 167 (374)
T PRK12328 90 SVEIGDELTYELSLENMGRTAANTLFKELEYHIQRLLEESIFEKYKK-KVGKIVFGTVVRVDNEENTFIEI-DEIRAVLP 167 (374)
T ss_pred CCCCCCEEEEecChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEecCCCEEEEc-CCeEEEeC
Confidence 5899999986442112 222223344443221 0112233432 4799999999999874 599999 68999999
Q ss_pred CcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCC---EEEEEEe
Q 000176 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR---RINLSFM 655 (1924)
Q Consensus 615 ~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~---ri~lS~k 655 (1924)
.++.. |.+.|++|+.++|.|.+|+...+ .+.||..
T Consensus 168 ~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSRt 205 (374)
T PRK12328 168 MKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSRT 205 (374)
T ss_pred HHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEcC
Confidence 99984 56789999999999999998766 7888874
No 392
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.69 E-value=0.66 Score=54.97 Aligned_cols=172 Identities=13% Similarity=-0.043 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC----hHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFK-----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HIK 1819 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~-----~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~----~~~ 1819 (1924)
+.|..++.-+++..++.++..+-...+.... ....+...++..++.. .++++.+.|+.|++...... ..+
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 6677777777777888888777766665432 2345566677777777 89999999999998653321 147
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-CCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chhH
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSEY---P-KRTD------LWSIYLDQEIRLGDVDLIRGLFERAISLSLP-PKKM 1888 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~~---P-k~~d------lw~~y~~le~k~gd~~~ar~lferal~~~~~-pk~~ 1888 (1924)
++..++.++-+..|+++|.....+++... . +++. +.+.++-.+..+|..-.|.+..+.+....+- -+++
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 89999999999999999999999887643 2 3332 3444555566788888888888888763211 1121
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1889 K--FLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1889 k--~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
- .-...+.|+.+..||.+.+-.-|+.|+....+
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 0 12445668888889999888888888765544
No 393
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=95.64 E-value=0.04 Score=66.89 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=58.9
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeecc
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSS 1336 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~ 1336 (1924)
.|++++|+|.++... ++++|+|| +..|++|..|.. |.+.|++|+.++|+|.+++...++...+.||+..+
T Consensus 138 ~Geiv~g~V~r~~~~-~~i~vdlg-~~ea~LP~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSRt~p 207 (374)
T PRK12328 138 VGKIVFGTVVRVDNE-ENTFIEID-EIRAVLPMKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSRTSP 207 (374)
T ss_pred cCcEEEEEEEEEecC-CCEEEEcC-CeEEEeCHHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEcCCH
Confidence 899999999999864 16999998 799999988873 77899999999999999998754125788888544
No 394
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.38 Score=55.33 Aligned_cols=130 Identities=18% Similarity=0.039 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHH----------HH-----------
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQ----------RA----------- 1808 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~----------ra----------- 1808 (1924)
....++-.|....+++.|.+.|+++...+|+..+.-+-+++-+.+. .+..|..+.. ++
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse 125 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE 125 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence 3344444555555555555555555555555444444444444444 3333322211 11
Q ss_pred ---------HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH----H
Q 000176 1809 ---------LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL----F 1875 (1924)
Q Consensus 1809 ---------l~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l----f 1875 (1924)
+...|...........|.+.++.|++|.|..-|+.+++...-+.-+-+..+-.+++.++++.|..+ .
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 122343333577888899999999999999999999998877777777778888899999887654 5
Q ss_pred HHHHh
Q 000176 1876 ERAIS 1880 (1924)
Q Consensus 1876 eral~ 1880 (1924)
+|.+.
T Consensus 206 eRG~r 210 (459)
T KOG4340|consen 206 ERGIR 210 (459)
T ss_pred Hhhhh
Confidence 55554
No 395
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.21 Score=56.64 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=75.0
Q ss_pred CCCCCCEEEEEEEEE---eCCeEEEEEccccccchhhHhhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCccc
Q 000176 542 KFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~v---~~~~l~lT~K~~Lv~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel 618 (1924)
.|..|+++.+.|... ..+.+.+ -+ .-..|- -+.|+++.|.|..+...|..|++++...+++|.|++
T Consensus 29 ty~~~~~iyssv~G~~~~~~~~v~V--Ip--------l~g~Yi-P~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~ 97 (239)
T COG1097 29 TYFEGGKIYSSVVGLLDVKGKLVRV--IP--------LEGRYI-PEVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDF 97 (239)
T ss_pred cEecCCEEEEEEEeEEEEeCCEEEE--Ee--------CCCccc-CCCCCEEEEEEEEEcccceEEEcCCccceEeehhhh
Confidence 456778888777765 2222211 11 111231 246999999999999999999999889999999998
Q ss_pred CCCC----CCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEee
Q 000176 619 GLDP----GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1924)
Q Consensus 619 ~~~~----~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~ 656 (1924)
-... ..+....|.+|+.|.|+|.++|+ .....|+++.
T Consensus 98 ~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~-~~~~~L~~k~ 138 (239)
T COG1097 98 LRRKFENAEKDLRPFLNVGDLVYAKVVDVDR-DGEVELTLKD 138 (239)
T ss_pred hcccccccccccccccccCCEEEEEEEEccC-CCceEEEeec
Confidence 3222 24667789999999999999996 4677788753
No 396
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=95.55 E-value=0.047 Score=49.24 Aligned_cols=61 Identities=13% Similarity=0.018 Sum_probs=36.8
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeee
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1334 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr 1334 (1924)
.|++.+.+|.++++. |+|++.+.+..-++|..|+. ..+++|+.|.++|+. |. .+++.++++
T Consensus 1 iG~~~~L~V~~~~~~--g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~VFvY~-D~----~~rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEF--GYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEVFVYL-DK----EGRLVATTK 61 (61)
T ss_dssp --------EEEE-SS--EEEEEETT-EEEEEEGGG--------------TTSEEEEEEEE--T----TS-EEEE--
T ss_pred CCCCcceEEEEEeCC--EEEEECCCCCEEEechHHcC--------CCCCCCCEEEEEEEE-CC----CCCEEEecC
Confidence 488899999999999 99999998899999999983 447799999999887 43 357777763
No 397
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.54 E-value=0.016 Score=45.52 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=31.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1664 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1696 (1924)
Q Consensus 1664 ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~ 1696 (1924)
|+++|..+|+++.+|..|+.++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999973
No 398
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.48 E-value=0.096 Score=56.93 Aligned_cols=90 Identities=13% Similarity=0.003 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C----------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000176 1765 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q----------QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~----------~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~ 1833 (1924)
++.|++.++....+.|.+.+.+++|+..|+.. + +++|..-|+.||..+|... +++..+|..+..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHh
Confidence 46788888888888888899888888888766 2 4566777788888888873 677777777664432
Q ss_pred -----------HHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1834 -----------ADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1834 -----------~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
+++|...|++++...|.+...+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 67788888888888898855444
No 399
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=95.46 E-value=0.17 Score=52.53 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHh----CChHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 000176 1749 KKVHLALLGLYERT----EQNKLADELLYKMIKKFKH---------SCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRH 1815 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~----gk~e~A~~~fe~~lk~~~~---------~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~ 1815 (1924)
..+|..++....++ +.-..-..+++++++.|.+ ..++|+.|+.+. +.++++|+-+...--..
T Consensus 22 L~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~-----~dp~~if~~L~~~~IG~ 96 (125)
T smart00777 22 LDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC-----DEPRELFQFLYSKGIGT 96 (125)
T ss_pred hHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHCCcch
Confidence 45555555544321 1223344455555544421 134555555532 23445555555444344
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1816 KHIKFISQTAILEFKNGVADRGRSMFE 1842 (1924)
Q Consensus 1816 ~~~~~~~~~A~le~~~g~~e~Ar~lfe 1842 (1924)
.+..+|..||.++...|++.+|..+|+
T Consensus 97 ~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 97 KLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445556666666666666666666654
No 400
>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]
Probab=95.45 E-value=0.015 Score=77.07 Aligned_cols=79 Identities=29% Similarity=0.352 Sum_probs=72.0
Q ss_pred ccCCCCCEEEEEEEEEeece---EEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1363 EDLSPNMIVQGYVKNVTSKG---CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G---~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
+.+-+|.+|.+.|++|+..- +-|.+..|+.|+|+.+++|+.-+.+|...+++||.|.|+|+++|.++=.+.||+|.+
T Consensus 981 et~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~s 1060 (1299)
T KOG1856|consen 981 ETFYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTS 1060 (1299)
T ss_pred hHhccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhH
Confidence 45789999999999997754 467899999999999999999899999999999999999999999999999999998
Q ss_pred cc
Q 000176 1440 DS 1441 (1924)
Q Consensus 1440 ~~ 1441 (1924)
+.
T Consensus 1061 dl 1062 (1299)
T KOG1856|consen 1061 DL 1062 (1299)
T ss_pred Hh
Confidence 75
No 401
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=95.33 E-value=0.036 Score=69.50 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=50.8
Q ss_pred CCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEECccCCCcc------------cCCCCccCCCCcEEEEEEEE
Q 000176 1365 LSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSDGY------------VESPEKEFPIGKLVAGRVLS 1424 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~--G~fV~l~~~v~g~v~~selsd~~------------~~~~~~~f~~G~~V~~kVl~ 1424 (1924)
..+|+++.|+|+++.+. |+||+||.+..||+|++++.+.+ ..+..+.+++||.|.+.|+.
T Consensus 23 ~~vGnIY~GrV~~i~p~l~aAFVdiG~~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~K 96 (414)
T TIGR00757 23 QLKGNIYKGRVTRILPSLQAAFVDIGLEKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVK 96 (414)
T ss_pred CCCCCEEEEEEeeecCCCceEEEEcCCCceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEee
Confidence 45899999999999998 99999999999999999997632 22344568899999999876
No 402
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.32 E-value=6 Score=47.71 Aligned_cols=227 Identities=15% Similarity=0.124 Sum_probs=140.8
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCc--chhhHH-HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCC-------------
Q 000176 1686 LSMADVEKARSIAERALQTINIR--EENEKL-NIWVAYFNLENEYG-NPPEEAVVKVFQRALQYCDP------------- 1748 (1924)
Q Consensus 1686 ~~~~e~dkAr~v~eraL~~i~~~--ee~ekl-~lWiayl~le~~~g-~~~~e~a~~vferAl~~~~~------------- 1748 (1924)
..+|+++.|...+.|+-...+.. ...+.+ .+......-....+ .+ +.|..-++||..+.+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~--~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKY--EEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 45689999999999988644221 111111 33333333333344 44 8889999999988411
Q ss_pred --HHHHHHHHHHHHHhCCh---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC-CCChHHHH
Q 000176 1749 --KKVHLALLGLYERTEQN---KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP-RHKHIKFI 1821 (1924)
Q Consensus 1749 --~~i~~~l~~i~~~~gk~---e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p-~~~~~~~~ 1821 (1924)
..+...++..|...+.+ ++|..+.+.+-+.|++.+.++.....++.+. +.+++.+.+.+++...+ ....+...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 16677777788777664 4566677778888999999998888888888 99999999999999886 33445555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH----Hc----CC---HHHHHHHHHHHHh---cCCCc
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEI----RL----GD---VDLIRGLFERAIS---LSLPP 1885 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~--~Pk~~dlw~~y~~le~----k~----gd---~~~ar~lferal~---~~~~p 1885 (1924)
............ ..|...+..+|.. .|...+ |..-+-+.. .. .+ .+.+..+++++-+ ..+.+
T Consensus 162 l~~i~~l~~~~~-~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 162 LHHIKQLAEKSP-ELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHhhCc-HHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 555555555444 4555555555543 344333 543332222 11 12 3344455554333 23444
Q ss_pred hhHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1886 KKMK----FLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1886 k~~k----~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
+.+. .+|+.--..+. .+++..|..-|+-|+.
T Consensus 240 ~~~~a~~~LLW~~~~~~~~-~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYK-AKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHH
Confidence 3321 46887655544 7899999999988774
No 403
>PRK05054 exoribonuclease II; Provisional
Probab=95.29 E-value=0.047 Score=72.89 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=57.6
Q ss_pred CCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCc---cc--CC-------CCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1368 NMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDG---YV--ES-------PEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1368 G~~v~G~V~~v~~~G~fV~l~~-~v~g~v~~selsd~---~~--~~-------~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
|+...|.|..++++|+||+|.. +++|+||++.|.+. |. .+ -...|+.||.|+++|.++|.+.++|.+
T Consensus 562 ~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~~i~~ 641 (644)
T PRK05054 562 DTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETRSIIA 641 (644)
T ss_pred CeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccCeEEE
Confidence 4599999999999999999965 59999999999763 21 11 124799999999999999999999987
Q ss_pred Ee
Q 000176 1435 TL 1436 (1924)
Q Consensus 1435 Sl 1436 (1924)
++
T Consensus 642 ~~ 643 (644)
T PRK05054 642 RP 643 (644)
T ss_pred EE
Confidence 64
No 404
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.22 E-value=0.8 Score=52.08 Aligned_cols=205 Identities=13% Similarity=0.235 Sum_probs=128.0
Q ss_pred CCchHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---cchhh-HHHHHHHHHHHHHHcC
Q 000176 1657 APRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENE-KLNIWVAYFNLENEYG 1728 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s----~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~---~ee~e-kl~lWiayl~le~~~g 1728 (1924)
..+|...|++.|...|.- ..+..+.+.....++.+++..+.|.+.|.-|.. +.-.| ..|--+.|+.--.+.
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m- 121 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM- 121 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh-
Confidence 445677888888777653 233455666778899999999999888753321 11122 245666666632222
Q ss_pred CCCHHHHHHHHHH---HHhcCCCHHHHH----HHHHHHHHhCChHHHHHHHHHHHHhc------------CCCHHHHHHH
Q 000176 1729 NPPEEAVVKVFQR---ALQYCDPKKVHL----ALLGLYERTEQNKLADELLYKMIKKF------------KHSCKVWLRR 1789 (1924)
Q Consensus 1729 ~~~~e~a~~vfer---Al~~~~~~~i~~----~l~~i~~~~gk~e~A~~~fe~~lk~~------------~~~~~vw~~~ 1789 (1924)
+-..+.|+. |++-.....+|+ .++.+|...+.|-+...++..+-.-+ .+-..+|-.-
T Consensus 122 ----~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 122 ----DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred ----HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 223333333 333333345554 47777766666655555554433222 1234566666
Q ss_pred HHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH--HHHH
Q 000176 1790 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFI----SQTAILEFKNGVADRGRSMFEGILSEY-----PKRTD--LWSI 1857 (1924)
Q Consensus 1790 a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~----~~~A~le~~~g~~e~Ar~lfe~aL~~~-----Pk~~d--lw~~ 1857 (1924)
.++|..+ +..+...+|++||..-..-.|+.++ -.=+.++.+.|.++.|.+-|=.|+++| |.|+. -|.+
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 6777777 8888899999998765555554332 222457888999999999999999886 55554 3778
Q ss_pred HHHHHHHcC
Q 000176 1858 YLDQEIRLG 1866 (1924)
Q Consensus 1858 y~~le~k~g 1866 (1924)
++.|+++.|
T Consensus 278 LANMLmkS~ 286 (440)
T KOG1464|consen 278 LANMLMKSG 286 (440)
T ss_pred HHHHHHHcC
Confidence 888888753
No 405
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.17 E-value=1.8 Score=55.05 Aligned_cols=151 Identities=17% Similarity=0.089 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH------H--Hhc--C-CCHHHHHHHHHHHHhc-CHHHHHHHHHHH------HHh
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKM------I--KKF--K-HSCKVWLRRVQRLLKQ-QQEGVQAVVQRA------LLS 1811 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~------l--k~~--~-~~~~vw~~~a~~l~~~-~~~~A~~l~~ra------l~~ 1811 (1924)
++|-..+.+|++..++++|.+.|.+. + .+| | .-.++-..|+..+.+. +++.|...|-.| +..
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 67777888888888999999988752 2 222 3 2244455777777777 777776555332 111
Q ss_pred -------------CC---C-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1812 -------------LP---R-HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1812 -------------~p---~-~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
+. + ......|-..|+-|...|++|+|..+|-.+ ++...-++||.+.|..+.|-.+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHH
Confidence 00 0 000123445577777889999999998775 5677778889999999998888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1875 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1875 feral~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~ 1912 (1924)
-+.... + ...-.+|..-.+=..++|.+.+++++|
T Consensus 814 a~e~~~---~-e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECHG---P-EATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhcC---c-hhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 877543 2 222234444444344578877777665
No 406
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.11 E-value=0.048 Score=51.74 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSE---YPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~---~Pk~----~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.++..+|.+++..|++++|.+.|++++.. .+.. ...|..++..+...|++++|...|++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56777888888888888888888888754 3321 23567777777788888888888888776
No 407
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.05 E-value=3.3 Score=51.52 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSE-YPKR---- 1851 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~--~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~-~Pk~---- 1851 (1924)
......|+.++....+. .++.|...+.++....+... .+.+...+|.+....|+.++|...++..+.. ..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 35678899999999999 99999999999887653321 3578999999999999999999999888872 1111
Q ss_pred -----------------------------HHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1852 -----------------------------TDLWSIYLDQEIRL------GDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1852 -----------------------------~dlw~~y~~le~k~------gd~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
..++..++.+.... ++.+.+...|..++. +.|...+ .|..|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k-~~~~~a 299 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEK-AWHSWA 299 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHH-HHHHHH
Confidence 12466666666666 788899999999998 7776664 788788
Q ss_pred HHHHH
Q 000176 1897 EYEKS 1901 (1924)
Q Consensus 1897 ~~E~~ 1901 (1924)
.+..+
T Consensus 300 ~~~~~ 304 (352)
T PF02259_consen 300 LFNDK 304 (352)
T ss_pred HHHHH
Confidence 76444
No 408
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=95.03 E-value=0.066 Score=59.23 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=55.4
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc--C----------CCCccCCCCcEEEEEEEEEeCC--CCE
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV--E----------SPEKEFPIGKLVAGRVLSVEPL--SKR 1431 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~--~----------~~~~~f~~G~~V~~kVl~vd~e--~~r 1431 (1924)
-.|+++.|.|+++++.|+||++|+ .++|||.+.|.+... . +-...+..|+.|++||..+..+ +..
T Consensus 80 f~gEVv~g~V~~v~~~G~~v~~Gp-~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~~~ 158 (176)
T PTZ00162 80 FKDEVLDAIVTDVNKLGFFAQAGP-LKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDASNLF 158 (176)
T ss_pred CCCCEEEEEEEEEecceEEEEeeC-eEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCCCcE
Confidence 379999999999999999999985 669999999985421 1 1134678999999999877543 334
Q ss_pred EEEEeecc
Q 000176 1432 VEVTLKTS 1439 (1924)
Q Consensus 1432 i~LSlk~~ 1439 (1924)
+.+|+|+.
T Consensus 159 ~i~T~~~~ 166 (176)
T PTZ00162 159 AIATINSD 166 (176)
T ss_pred EEEEecCC
Confidence 55566653
No 409
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.00 E-value=0.34 Score=53.62 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~ 1829 (1924)
+++..+.+|-..|-..-|+--|..++...|+.+.++.-++-++... +++.|.+.|...++..|..+ -+..+-|...+
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~--Ya~lNRgi~~Y 144 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRGIALY 144 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch--HHHhccceeee
Confidence 4444456677778888999999999999999999999999999988 99999999999999999986 45555555556
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 000176 1830 KNGVADRGRSMFEGILSEYPKRTD--LWSIYLDQEIRLGDVDLIR-GLFERAIS 1880 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~aL~~~Pk~~d--lw~~y~~le~k~gd~~~ar-~lferal~ 1880 (1924)
--|++.-|..-|-.--+.+|+++- +|...... + -++..|+ ++.+|+-.
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~--k-~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ--K-LDPKQAKTNLKQRAEK 195 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh--h-CCHHHHHHHHHHHHHh
Confidence 678999999999998888888754 78765433 2 3555555 56777765
No 410
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.00 E-value=0.89 Score=57.62 Aligned_cols=185 Identities=12% Similarity=0.069 Sum_probs=94.9
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHH-HH---HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000176 1668 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NI---WVAYFNLENEYGNPPEEAVVKVFQRAL 1743 (1924)
Q Consensus 1668 l~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl-~l---Wiayl~le~~~g~~~~e~a~~vferAl 1743 (1924)
+..+|. +.+|..++.+.++.-+++-|...|-|+-.-.... -..++ .+ -+.....-.-|| ..|+|+.+|-.|=
T Consensus 686 iEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik-~vkrl~~i~s~~~q~aei~~~~g--~feeaek~yld~d 761 (1189)
T KOG2041|consen 686 IEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIK-LVKRLRTIHSKEQQRAEISAFYG--EFEEAEKLYLDAD 761 (1189)
T ss_pred HhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchh-HHHHhhhhhhHHHHhHhHhhhhc--chhHhhhhhhccc
Confidence 345565 8999999999999999999998888765311100 00000 00 011222223356 3477777776653
Q ss_pred hcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHH
Q 000176 1744 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKF 1820 (1924)
Q Consensus 1744 ~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~--~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~ 1820 (1924)
+..-.-+++..++. +-...+++...-... .....+|.+.++.+... ..++|+++|..+-.
T Consensus 762 rrDLAielr~klgD-------wfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------- 824 (1189)
T KOG2041|consen 762 RRDLAIELRKKLGD-------WFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------- 824 (1189)
T ss_pred hhhhhHHHHHhhhh-------HHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------
Confidence 33222233333333 223333333221111 12245666666666666 67777776665421
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1821 ~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
...++..++...+++. +|.+....|.+..+.-.++++....|--++|-+.|-|
T Consensus 825 ~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1122223332222222 3444555666666666666666666666666555544
No 411
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.82 E-value=0.64 Score=52.84 Aligned_cols=152 Identities=13% Similarity=0.179 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhCChHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHhc-CH
Q 000176 1731 PEEAVVKVFQRALQYCDPK-----KVHLALLGLYERTEQNKLADELLYKMIKKF------KHSCKVWLRRVQRLLKQ-QQ 1798 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~-----~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~------~~~~~vw~~~a~~l~~~-~~ 1798 (1924)
..++|..-|++.++..+.. ...-.++.++.+.+++++..+.|..++.-. ..+.+.......|.... +.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 3588999999999988764 677788889999999999999998887532 13455555666666655 77
Q ss_pred HHHHHHHHHHHHhCCCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHH
Q 000176 1799 EGVQAVVQRALLSLPRHKHIKFI----SQTAILEFKNGVADRGRSMFEGILSEYPKR------------TDLWSIYLDQE 1862 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~~~~~----~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~------------~dlw~~y~~le 1862 (1924)
+-..+.|+..|..+...+.-.+| .+++.++|..|.+-+-..++.++-.++.+. ..+|..-+++|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 88888888888776544333455 578999999999999999998887766431 23455556788
Q ss_pred HHcCCHHHHHHHHHHHHhcC
Q 000176 1863 IRLGDVDLIRGLFERAISLS 1882 (1924)
Q Consensus 1863 ~k~gd~~~ar~lferal~~~ 1882 (1924)
..+.+-.+...+|+++++.+
T Consensus 202 T~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred hhhcccHHHHHHHHHHHHhh
Confidence 88888889999999999843
No 412
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=94.81 E-value=0.24 Score=53.87 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=75.8
Q ss_pred CCCCCCEEEEEEEEE---eCCeEEEEEccccccchhhHhhhhcccCCCcEEEEEEEEEEcceEEEEEcC----------C
Q 000176 542 KFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN----------G 608 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~v---~~~~l~lT~K~~Lv~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~----------~ 608 (1924)
.|..|..+.+-+..+ +.+....+.++.... +.-.+.|+++-|.|+++....+.|+..+ -
T Consensus 26 t~~~~g~i~Aa~~G~~~~d~~n~~~~V~p~~~~--------~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~ 97 (188)
T COG1096 26 TYEEGGEIRAAATGVVRRDDKNRVISVKPGKKT--------PPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATS 97 (188)
T ss_pred eEeECCEEEEeecccEEEcccceEEEeccCCCC--------CCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCCCC
Confidence 455677777666655 455666666654321 1224679999999999999999998752 1
Q ss_pred eEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEe
Q 000176 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1924)
Q Consensus 609 v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k 655 (1924)
..|-+|.|.++.....+.++.|++|+.|+++|++.- ..+.||.+
T Consensus 98 ~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~~~Lst~ 141 (188)
T COG1096 98 GAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DPIQLSTK 141 (188)
T ss_pred ceeeEEEEecccccccccccccccccEEEEEEEecC---CCeEEEec
Confidence 457889999887777788899999999999999973 45777764
No 413
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.80 E-value=0.45 Score=51.16 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=76.0
Q ss_pred HHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000176 1758 LYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831 (1924)
Q Consensus 1758 i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~ 1831 (1924)
.....+..+.+.+.+++++..|... ..-|. ...+..|.+.. ..++..++..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~-----------~~~r~~l~~~~--------~~~~~~l~~~~~~~ 75 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWV-----------EPERERLRELY--------LDALERLAEALLEA 75 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTH-----------HHHHHHHHHHH--------HHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHH-----------HHHHHHHHHHH--------HHHHHHHHHHHHhc
Confidence 3455677888888888888877421 11232 22233333332 46777788888899
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
|++++|..++++++..+|-+..+|..++..+...|+...|...|+++..
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765
No 414
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.72 E-value=0.32 Score=53.04 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG----------VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-- 1865 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g----------~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~-- 1865 (1924)
++.|++.++.....+|.+ .+.+.+||..+..+. .++.|.+-|+.+|..+|+..+....++..+..+
T Consensus 7 FE~ark~aea~y~~nP~D--adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD--ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 789999999999999987 588888887665332 367888889999999999988665566655533
Q ss_pred --CC-------HHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1866 --GD-------VDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1866 --gd-------~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
.+ +++|...|++|.. ..|.+. +|++-+++
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne--~Y~ksLe~ 122 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVD--EDPNNE--LYRKSLEM 122 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHH--H-TT-H--HHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHh--cCCCcH--HHHHHHHH
Confidence 33 4556666666666 445443 55555544
No 415
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=94.69 E-value=0.12 Score=63.82 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=58.0
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeC----C-ceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEeccc-CCceEEEEe
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIG----P-HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTV-RGTFHVELS 1332 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~----~-~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~-~~~~~i~LS 1332 (1924)
.|++++|+|.++... +++|+|+ . +..|++|..|. -|.+.|++|+.++|+|.+|.... +| ..|.||
T Consensus 152 ~GeIV~G~V~r~e~~--~viv~l~~~~g~~~~EaiLP~~Eq------ip~E~y~~Gdrika~i~~V~~~~~kG-pqIilS 222 (449)
T PRK12329 152 EDTVLTARVLRFERQ--SVIMAVSSGFGQPEVEAELPKREQ------LPNDNYRANATFKVFLKEVSEGPRRG-PQLFVS 222 (449)
T ss_pred cCcEEEEEEEEEcCC--CEEEEecccCCCcceEEEecHHHc------CCCCcCCCCCEEEEEEEEeecCCCCC-CEEEEE
Confidence 899999999999888 9999993 3 48999998886 37789999999999999998763 43 578888
Q ss_pred eecc
Q 000176 1333 LRSS 1336 (1924)
Q Consensus 1333 lr~~ 1336 (1924)
+..+
T Consensus 223 Rt~p 226 (449)
T PRK12329 223 RANA 226 (449)
T ss_pred cCCH
Confidence 8544
No 416
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=94.60 E-value=0.037 Score=42.12 Aligned_cols=30 Identities=27% Similarity=0.538 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000176 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900 (1924)
Q Consensus 1867 d~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~ 1900 (1924)
++++||.+|||.+. ..|.. ..|.+|+.||+
T Consensus 2 E~dRAR~IyeR~v~--~hp~~--k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEV--KNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCc--hHHHHHHHhhc
Confidence 35666666666666 33332 25666666654
No 417
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=1.7 Score=51.16 Aligned_cols=143 Identities=15% Similarity=0.046 Sum_probs=93.5
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHH---HHHHHHHcCCH
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQ---TAILEFKNGVA 1834 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~---~A~le~~~g~~ 1834 (1924)
....+++.+|..+|..++...+.+..+-+.|+..++.. +.+.|..+|... |...+-+.|.. ...++.+....
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHHHHHHHHHHHHHhcC
Confidence 45677888888888888888888888888888888888 888888777653 33222222222 22333333332
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHH
Q 000176 1835 DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1907 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~ 1907 (1924)
.+.. -+++.+..+|++.++-..+++++...|+.+.|.+.+-..+..+....+- ..-+.++++..-.|..+-
T Consensus 220 ~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~-~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG-EARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc-HHHHHHHHHHHhcCCCCH
Confidence 2222 3455677788888888888888888888888887777777654443333 456677777666664333
No 418
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.38 E-value=0.18 Score=47.73 Aligned_cols=64 Identities=8% Similarity=0.056 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHh---CCCC-C-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLS---LPRH-K-HIKFISQTAILEFKNGVADRGRSMFEGILSE 1847 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~---~p~~-~-~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~ 1847 (1924)
.++..++..+... ++++|...|++|++. .+.. . ...++..+|.++...|++++|...|+++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445555555555 555555555555543 2211 1 1456777888888888888888888888764
No 419
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.27 E-value=1.6 Score=54.45 Aligned_cols=183 Identities=12% Similarity=0.045 Sum_probs=103.0
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChH
Q 000176 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1766 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e 1766 (1924)
+..+..+-.+.+.+||+..|. -=-||+-|-..... +..+++++|++|++..... +.........|
T Consensus 180 RERnp~aRIkaA~eALei~pd--------CAdAYILLAEEeA~-Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g--- 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPD--------CADAYILLAEEEAS-TIVEAEELLRQAVKAGEAS---LGKSQFLQHHG--- 244 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhh--------hhHHHhhccccccc-CHHHHHHHHHHHHHHHHHh---hchhhhhhccc---
Confidence 335566667788899976552 22355555443332 5788999999998764311 00000000000
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1767 LADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1844 (1924)
Q Consensus 1767 ~A~~~fe~~lk~~-~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~a 1844 (1924)
..++....+. ....-+-.+++..+.+. +.++|.+.|..+++.+|...+..+...+...+...+.+.++..++.+-
T Consensus 245 ---~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 245 ---HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ---chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 0011111111 00122234566666666 888888888888888887666778888888888888888888887774
Q ss_pred HHh-CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhcCCCchhHH
Q 000176 1845 LSE-YPKRTDLWSIYLDQEIR-LGD---------------VDLIRGLFERAISLSLPPKKMK 1889 (1924)
Q Consensus 1845 L~~-~Pk~~dlw~~y~~le~k-~gd---------------~~~ar~lferal~~~~~pk~~k 1889 (1924)
=.. .|+...+-+.-+-+..+ .+| -..|.+.+.||+. ..|.-.+
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp~ 381 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVPK 381 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCch
Confidence 211 34443332222222222 122 1236788899988 5555554
No 420
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=94.25 E-value=0.1 Score=69.64 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=55.2
Q ss_pred CCEEEEEEEEEecCeEEEEE-CCCeEEEecCCccCc--c-c--ccCc-------ccCCCCCCEEEEEEEEeeCCCCeEEE
Q 000176 762 NSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVD--G-Q--RADL-------SKTYYVGQSVRSNILDVNSETGRITL 828 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f-~~~l~Glv~~s~~s~--~-~--~~~~-------~~~f~~Gq~V~~~V~~id~~~~r~~l 828 (1924)
|....|.|..++++|+||++ .+++.||+|.+.+.+ + + ..+. ...|++||.|+++|.++|.+++++.+
T Consensus 558 ~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~~i~~ 637 (639)
T TIGR02062 558 NTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETRSIIA 637 (639)
T ss_pred CcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccCcEee
Confidence 44899999999999999999 568999999999865 2 1 1111 12599999999999999999998865
Q ss_pred e
Q 000176 829 S 829 (1924)
Q Consensus 829 S 829 (1924)
.
T Consensus 638 ~ 638 (639)
T TIGR02062 638 R 638 (639)
T ss_pred e
Confidence 3
No 421
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=94.23 E-value=0.15 Score=63.04 Aligned_cols=107 Identities=14% Similarity=0.232 Sum_probs=73.0
Q ss_pred CCCCCCEEEEEEEE--EeCCe-EEEEEccccccc----hh-hHhhhhcccCCCcEEEEEEEEEEcceEEEEEc---C--C
Q 000176 542 KFKVGAELVFRVLG--VKSKR-ITVTHKKTLVKS----KL-AILSSYAEATDRLITHGWITKIEKHGCFVRFY---N--G 608 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~--v~~~~-l~lT~K~~Lv~~----~~-~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~---~--~ 608 (1924)
.+++|+.|...|-- .+-+| ..-|.|..+... .. -+...|.+ ..|.++.|+|.++...+++|++. | +
T Consensus 102 ~~~iGD~v~~~v~~~~~~fgRiAAq~aKQvi~Qkire~ER~~i~~ef~~-~~GeIV~G~V~r~e~~~viv~l~~~~g~~~ 180 (449)
T PRK12329 102 EAQLGDTVVLDVTPEQEDFGRMAAIQTKQVLAQKLRDQQRKMIQEEFQD-LEDTVLTARVLRFERQSVIMAVSSGFGQPE 180 (449)
T ss_pred CCcCCCEEEEecCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEcCCCEEEEecccCCCcc
Confidence 58999998765521 01111 122233322221 11 12333433 47999999999999999999983 4 3
Q ss_pred eEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCC---CEEEEEEe
Q 000176 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS---RRINLSFM 655 (1924)
Q Consensus 609 v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~---~ri~lS~k 655 (1924)
+.|+||.++.- |.+.|++|+.++|.|.+|+... -++.||..
T Consensus 181 ~EaiLP~~Eqi------p~E~y~~Gdrika~i~~V~~~~~kGpqIilSRt 224 (449)
T PRK12329 181 VEAELPKREQL------PNDNYRANATFKVFLKEVSEGPRRGPQLFVSRA 224 (449)
T ss_pred eEEEecHHHcC------CCCcCCCCCEEEEEEEEeecCCCCCCEEEEEcC
Confidence 99999999983 5678999999999999998763 46888863
No 422
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.08 E-value=2.6 Score=52.74 Aligned_cols=172 Identities=19% Similarity=0.178 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
++-.+..++|++.+|+= ..|.-|+. +.+....+|.++|+++++-- +..++. +......-+-.++.
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg-----------E~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAG-----------EASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH-----------HHhhchhhhhhcccchhhhhh
Confidence 55566677777776643 55554442 34555678888888887632 111111 11111111111111
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~--~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
.-..+..+-+-..+|....+.|..++|..+|..+++.+|.. ..+...++..+...+.+..++.++.+.=. ..-|+.+
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD-i~lpkSA 330 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD-ISLPKSA 330 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc-ccCCchH
Confidence 11122223455667888889999999999999999998863 34778888888999999999999999643 2234555
Q ss_pred HHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q 000176 1889 KFLFKKYLEYEKSVGE---------------EERIEYVKQKAMEY 1918 (1924)
Q Consensus 1889 k~lw~~yl~~E~~~G~---------------~~~~~~v~~rAle~ 1918 (1924)
-..|.+-+---+..|| ...|.+...||.++
T Consensus 331 ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 331 TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 4456665533333333 23355677787775
No 423
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.02 E-value=3.3 Score=51.08 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CC---cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-cC
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTI-NI---REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ-YC 1746 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i-~~---~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~-~~ 1746 (1924)
.+++....--.+++.-.|++.+|.+..-+.--.. +- ..+-.+-..|-.+.-+..+.+.| ..+...|.+|++ .+
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y--~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY--QASSVLFLKALRNSC 314 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH--HHHHHHHHHHHHHHH
Confidence 3666666666777888899999888765432100 00 00111124455555556666754 778888999996 11
Q ss_pred --------C----------CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 000176 1747 --------D----------PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1795 (1924)
Q Consensus 1747 --------~----------~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~ 1795 (1924)
+ .-++.+..+-.|...|+.-.|.+.|..+.+.|..+|.+|++++...+-
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1 127788888899999999999999999999999999999999998763
No 424
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.98 E-value=2.5 Score=47.79 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHh-CChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHhc
Q 000176 1731 PEEAVVKVFQRALQYCDP-------KKVHLALLGLYERT-EQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ 1796 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~-gk~e~A~~~fe~~lk~~~~------~~~vw~~~a~~l~~~ 1796 (1924)
+.++|...+++|++..-. -+-|+.++.+|+.- .++++|...|+.+-.-|.. ..+.++..+++..+.
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 457778888888776432 16688899999876 8899999999999987742 345677788877777
Q ss_pred -CHHHHHHHHHHHHHhCCCCChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1797 -QQEGVQAVVQRALLSLPRHKHI-----KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1797 -~~~~A~~l~~ral~~~p~~~~~-----~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
++.+|..+|++.....-++.-+ ..+.+-|..++-..|.=.++.-+|+-...+|...+
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 9999999999877654443211 23344444555567888888888888888998655
No 425
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=1.3 Score=52.14 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=113.8
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHH--HHHHHHHHcCCCC
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV--AYFNLENEYGNPP 1731 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWi--ayl~le~~~g~~~ 1731 (1924)
.+..+++...++++|...|.+..+|..--..+.-.|..+.-+..+++.+..-+ ++.. ...++ .|.--....|-|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp-~~sYv~GmyaFgL~E~g~y- 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLP-CYSYVHGMYAFGLEECGIY- 191 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCc-HHHHHHHHHHhhHHHhccc-
Confidence 34589999999999999999999998888888888988888999988875422 2221 11222 122122344534
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhc-CHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVV 1805 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~----~~vw~~~a~~l~~~-~~~~A~~l~ 1805 (1924)
+.|++..+|||+.++.+ =...+.+.+++..+++.++.+..++.-..+.++ ..-|...+.|++.. .++.|.++|
T Consensus 192 -~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 -DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred -hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88999999999999876 566788899999999999999888766555433 33477888888888 999999999
Q ss_pred HHHH
Q 000176 1806 QRAL 1809 (1924)
Q Consensus 1806 ~ral 1809 (1924)
.+-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8754
No 426
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.87 E-value=3.3 Score=51.50 Aligned_cols=190 Identities=14% Similarity=0.084 Sum_probs=126.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHh----cC
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-PEEAVVKVFQRALQ----YC 1746 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~-~~e~a~~vferAl~----~~ 1746 (1924)
+.++...+.++...-...|++++..+....... + ..-..-++.|...+... ..+. .-+.....=.-++. ..
T Consensus 68 ~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~-~-~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~ 143 (352)
T PF02259_consen 68 SESYQRAYPSLVKLQQLVELEEIIELKSNLSQN-P-QDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPE 143 (352)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc-H-HHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchh
Confidence 345555556666666667777777776333211 0 00111135677655432 2211 01222211111222 11
Q ss_pred CCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH-hCCCC-----
Q 000176 1747 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFK----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL-SLPRH----- 1815 (1924)
Q Consensus 1747 ~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~----~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~-~~p~~----- 1815 (1924)
.....|+.++.+..+.|+++.|...+.++..... ..+.+.+.++.++... +..+|...++..+. .+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 1238999999999999999999999999887541 2678889999999999 99999999888887 22111
Q ss_pred --------------------------ChHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1816 --------------------------KHIKFISQTAILEFKN------GVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1816 --------------------------~~~~~~~~~A~le~~~------g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
...+++..+|.+.... +..+.+...|..++..+|.....|..++.++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 1136788888888877 78999999999999999999999999988876
Q ss_pred Hc
Q 000176 1864 RL 1865 (1924)
Q Consensus 1864 k~ 1865 (1924)
+.
T Consensus 304 ~~ 305 (352)
T PF02259_consen 304 KL 305 (352)
T ss_pred HH
Confidence 53
No 427
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=1.8 Score=49.45 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=101.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHH
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKV 1751 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~i 1751 (1924)
.-|+.++.-.+++.-....+...++..|.. +-.+--+++.+..+.| +++.|...|++.-+.+.. .-+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~----~p~L~s~Lgr~~MQ~G--D~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQ----EPQLLSGLGRISMQIG--DIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcc----cHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 456777778888888888888888755421 2357778888888999 778899889865543321 256
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1816 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~ 1816 (1924)
+.+.+.+|.-+.++..|...|.+++...+.++..-.+.|.+++.. +...|...++.++...|...
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 777777888888888888888888888777777777777777777 88888888888888888763
No 428
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=1.6 Score=51.38 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=89.5
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++.+++...|..++...|.++.+-..|+.+++..|+.+.|..++........ ..+...-.+.+.+..+.... .
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~----~~~~~~l~a~i~ll~qaa~~--~ 220 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ----DKAAHGLQAQIELLEQAAAT--P 220 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch----hhHHHHHHHHHHHHHHHhcC--C
Confidence 45588999999999999999999999999999999999999988876553322 22222222355555554421 1
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Q 000176 1734 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFK 1780 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~ 1780 (1924)
. -..+++.+..+|. .+.-+.++..|...|+++.|.+.+-.++++..
T Consensus 221 ~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 221 E-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred C-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 1 2346677777774 59999999999999999999998888887653
No 429
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.72 E-value=0.22 Score=58.16 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=88.7
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1788 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1788 ~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
..++-|+++ +|++|...|.+++...|.+. -++.+-|..|++...+..|..-++-++..+-....+|+.-+..-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~Np--V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNP--VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCc--cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 345667888 99999999999999998763 678888899999999999999999999887666667887777777889
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1867 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1867 d~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
....|..-+|++|. +.|+.. .+-+.|.++
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~~-ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKNI-ELKKSLARI 208 (536)
T ss_pred hHHHHHHhHHHHHh--hCcccH-HHHHHHHHh
Confidence 99999999999999 888766 566666654
No 430
>COG0557 VacB Exoribonuclease R [Transcription]
Probab=93.71 E-value=0.16 Score=68.87 Aligned_cols=74 Identities=28% Similarity=0.359 Sum_probs=62.8
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCC-cEEEEECccCCCcc-cCCC----------CccCCCCcEEEEEEEEEeCCCCE
Q 000176 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGY-VESP----------EKEFPIGKLVAGRVLSVEPLSKR 1431 (1924)
Q Consensus 1364 ~lk~G~~v~G~V~~v~~~G~fV~l~~~-v~g~v~~selsd~~-~~~~----------~~~f~~G~~V~~kVl~vd~e~~r 1431 (1924)
.-.+|+...|+|.+++.+|+||.|... ++|+||++.|.+.| .-+. ...|+.|+.|+++|.+++...++
T Consensus 619 ~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~~~ 698 (706)
T COG0557 619 KKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDERK 698 (706)
T ss_pred HHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEcccccc
Confidence 356899999999999999999999765 99999999999643 2222 34689999999999999999999
Q ss_pred EEEEee
Q 000176 1432 VEVTLK 1437 (1924)
Q Consensus 1432 i~LSlk 1437 (1924)
|.+++-
T Consensus 699 i~~~~v 704 (706)
T COG0557 699 IDFELV 704 (706)
T ss_pred eEEEec
Confidence 988764
No 431
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.67 E-value=0.073 Score=41.83 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=21.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000176 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872 (1924)
Q Consensus 1841 fe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar 1872 (1924)
|+++|+.+|++.+.|..|+.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666666666664
No 432
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.62 E-value=2.3 Score=55.11 Aligned_cols=162 Identities=19% Similarity=0.148 Sum_probs=91.9
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcC-CCHH------HHHHHHHHHH-h---c-CHHHHHHHHHHHHHhCCCCChHHHH
Q 000176 1754 ALLGLYERTEQNKLADELLYKMIKKFK-HSCK------VWLRRVQRLL-K---Q-QQEGVQAVVQRALLSLPRHKHIKFI 1821 (1924)
Q Consensus 1754 ~l~~i~~~~gk~e~A~~~fe~~lk~~~-~~~~------vw~~~a~~l~-~---~-~~~~A~~l~~ral~~~p~~~~~~~~ 1821 (1924)
+++.+.-=.|+.+.+.+++.++.+... ..+- .|+.+...+. - . ..+.|.++++++.+.+|+. .-..
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s--~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS--ALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc--HHHH
Confidence 334444456777777777777665221 1111 1111111111 1 2 5677888888888888876 2444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH-
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEYPK---RTD-LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL- 1896 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk---~~d-lw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl- 1896 (1924)
..-|+++...|+++.|.+.|++++..... -.+ .+..++..+.-+.++++|...|.+.+..+ ...++ +..|+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka---~Y~Y~~ 346 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKA---FYAYLA 346 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHH---HHHHHH
Confidence 55567777888888888888887743221 111 24445556667788888888888877732 22333 22222
Q ss_pred -HHHHHcCCH-------HHHHHHHHHHHHHHHh
Q 000176 1897 -EYEKSVGEE-------ERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1897 -~~E~~~G~~-------~~~~~v~~rAle~v~~ 1921 (1924)
-.....|+. +++..+|.++-.+.++
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 234445666 5566666666666554
No 433
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=93.57 E-value=0.099 Score=39.92 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1833 VADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1833 ~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
.+++||++||+.+...|. ...|..|+.+|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 467888888888877765 567888887763
No 434
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.25 E-value=2.3 Score=55.10 Aligned_cols=149 Identities=16% Similarity=0.114 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHhcCCCHHH--------HHHHHHHH-H---HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C
Q 000176 1731 PEEAVVKVFQRALQYCDPKKV--------HLALLGLY-E---RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~~i--------~~~l~~i~-~---~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~ 1797 (1924)
+-+...+.+.++.+..+-... |+..+..+ . .....+.|.++++.+.++||++.-..+..++++... +
T Consensus 203 dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~ 282 (468)
T PF10300_consen 203 DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGN 282 (468)
T ss_pred cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 558888889998875543311 11111111 1 245678899999999999997666556667777667 9
Q ss_pred HHHHHHHHHHHHHhCCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHcCCH-----
Q 000176 1798 QEGVQAVVQRALLSLPRHKH--IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD--QEIRLGDV----- 1868 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~--~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~--le~k~gd~----- 1868 (1924)
.++|.+.|++|+..-....+ .-.+..+|..+.-+.++++|...|.++++.+.- ...++.|+. .+...++.
T Consensus 283 ~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~ 361 (468)
T PF10300_consen 283 LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKE 361 (468)
T ss_pred HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhh
Confidence 99999999999853322221 245667777888899999999999999986554 355555544 44566777
Q ss_pred --HHHHHHHHHHHh
Q 000176 1869 --DLIRGLFERAIS 1880 (1924)
Q Consensus 1869 --~~ar~lferal~ 1880 (1924)
++|..+|.++-.
T Consensus 362 ~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 362 HKKEAEELFRKVPK 375 (468)
T ss_pred hHHHHHHHHHHHHH
Confidence 888999988776
No 435
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.05 E-value=0.22 Score=38.71 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.+|..+|.+++..|++++|+..|+++++.+|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467777777777778888888888877777763
No 436
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.88 E-value=9.4 Score=47.32 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhc-----CCCHHHHHHHHHHHHH---hCChHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhc-------
Q 000176 1733 EAVVKVFQRALQY-----CDPKKVHLALLGLYER---TEQNKLADELLYKMIK-KFKHSCKVWLRRVQRLLKQ------- 1796 (1924)
Q Consensus 1733 e~a~~vferAl~~-----~~~~~i~~~l~~i~~~---~gk~e~A~~~fe~~lk-~~~~~~~vw~~~a~~l~~~------- 1796 (1924)
+...++.+..-.. .....+-+.|+-.+.+ .|+.++|.+++..++. .-+.++++|...|..+.+.
T Consensus 158 damI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~ 237 (374)
T PF13281_consen 158 DAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFT 237 (374)
T ss_pred HHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCcc
Confidence 5555555544333 1123778888888888 9999999999999554 4567889998888877654
Q ss_pred ---CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH----HHHHH---HHHH-H--hCCCCHHHHHH--HHHH
Q 000176 1797 ---QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR----GRSMF---EGIL-S--EYPKRTDLWSI--YLDQ 1861 (1924)
Q Consensus 1797 ---~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~----Ar~lf---e~aL-~--~~Pk~~dlw~~--y~~l 1861 (1924)
..++|...|.++....|.. -.-+++|.++.-.|.... .+.+- ..++ + ...+..+.|.. |+.+
T Consensus 238 d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea 314 (374)
T PF13281_consen 238 DRESLDKAIEWYRKGFEIEPDY---YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEA 314 (374)
T ss_pred chHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 4678999999999888644 455677777776664322 23322 1111 1 12334556744 6666
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 000176 1862 EIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1862 e~k~gd~~~ar~lferal~~ 1881 (1924)
.+-.||+++|...+++++..
T Consensus 315 ~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 315 SVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHcCCHHHHHHHHHHHhhc
Confidence 66789999999999999983
No 437
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.80 E-value=0.18 Score=38.57 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1764 k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
+.+.|+.+|++++..++.++.+|..|+.|.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 455666666666666666666666666654
No 438
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=3.2 Score=48.19 Aligned_cols=93 Identities=11% Similarity=0.059 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHH----HHHHHhCCCC---------
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVV----QRALLSLPRH--------- 1815 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~----~ral~~~p~~--------- 1815 (1924)
...+..+-+..+.|++++|.+-|+.++..-.-.+-+-++.+...++. +++.|..+. +|.++..|.-
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi 224 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI 224 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence 44455556778899999999999999987666777777777777777 888887555 4555444421
Q ss_pred ----------Ch----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1816 ----------KH----IKFISQTAILEFKNGVADRGRSMFE 1842 (1924)
Q Consensus 1816 ----------~~----~~~~~~~A~le~~~g~~e~Ar~lfe 1842 (1924)
-| ++++..-+..|++.++++.|++-+-
T Consensus 225 DvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 225 DVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred chhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 00 2445555677889999999886543
No 439
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.71 E-value=18 Score=41.74 Aligned_cols=130 Identities=12% Similarity=0.062 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC----CCChHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP----RHKHIKFISQT 1824 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~-~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p----~~~~~~~~~~~ 1824 (1924)
+.+.|++++.-.+.|.-..++|...++++ +..+.+...++...++. +.+.|...|++.-+... .....-+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34455556666677777888888888877 56677777788877777 88888888875443321 12223455666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1825 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1825 A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
|.++.-.+++..|.-.|.+++..+|.+....+.-+-...-.|+...|....+.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666667778888888888888887777666666666667777778888887776
No 440
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.30 E-value=3.8 Score=43.98 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000176 1852 TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923 (1924)
Q Consensus 1852 ~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~~ 1923 (1924)
..++..++..+...|+++.|..++++++. ..|-+- .+|...+......|+...|..+|+++...+...+
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E-~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~el 130 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALA--LDPYDE-EAYRLLMRALAAQGRRAEALRVYERYRRRLREEL 130 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-H-HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCH-HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 35677778888889999999999999999 565554 6899999999999999999999999999887654
No 441
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.20 E-value=9.8 Score=43.52 Aligned_cols=127 Identities=12% Similarity=0.102 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHH------HHHHHHHhc-CHHHHHHHHHHHHHhCCCCC----hH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL------RRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HI 1818 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~------~~a~~l~~~-~~~~A~~l~~ral~~~p~~~----~~ 1818 (1924)
.+|..-+..|..+.++++|...+.++.+-+..+...|. ..+.++... .+.++..+|++|....-.+- ..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 67777788899999999999999999987765555443 222222233 78888888888876553221 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPK--R----TDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk--~----~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
.+.-+-|.+ .+.-+++.|..+|++++..... | .+++......+.+...+..|-..|.+
T Consensus 112 maleKAak~-lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 112 MALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 233333433 3466899999999999876532 3 23566666667777777766655544
No 442
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=5.7 Score=45.82 Aligned_cols=189 Identities=12% Similarity=0.036 Sum_probs=117.7
Q ss_pred hcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhC-ChHHHHHHHHHHHHhcCC
Q 000176 1704 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTE-QNKLADELLYKMIKKFKH 1781 (1924)
Q Consensus 1704 ~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~g-k~e~A~~~fe~~lk~~~~ 1781 (1924)
.|.+.+++.. -++|+..-...++ .-+.|.++-+.++..+|.+ ++|.-.-.++...+ +..+-.+.+...+..++.
T Consensus 35 ~I~Yte~fr~---~m~YfRAI~~~~E-~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK 110 (318)
T KOG0530|consen 35 KIAYTEDFRD---VMDYFRAIIAKNE-KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK 110 (318)
T ss_pred EeeechhHHH---HHHHHHHHHhccc-cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc
Confidence 3455555443 4666666555554 2477888888888888875 88887777665443 355566777777778888
Q ss_pred CHHHHHHHHHHHHhc-CHH-HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000176 1782 SCKVWLRRVQRLLKQ-QQE-GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~-~~~-~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~ 1859 (1924)
+..+|...--.+... ++. +-.+..+++|....++-| +|..--......++++.-.+.-..+|..+--+-.+|+.-.
T Consensus 111 NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH--aWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ry 188 (318)
T KOG0530|consen 111 NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH--AWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRY 188 (318)
T ss_pred chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh--hhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheee
Confidence 888887665544444 444 556777888876655544 5554444444556688888888888777665556776522
Q ss_pred HHHHH-cCCHH-----HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1860 DQEIR-LGDVD-----LIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1860 ~le~k-~gd~~-----~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
-.... .|-.+ +-.......|. +-|.+- .-|+-...+.+.
T Consensus 189 fvi~~~~~~~~~~~le~El~yt~~~I~--~vP~Ne-SaWnYL~G~l~~ 233 (318)
T KOG0530|consen 189 FVITNTKGVISKAELERELNYTKDKIL--LVPNNE-SAWNYLKGLLEL 233 (318)
T ss_pred EEEEeccCCccHHHHHHHHHHHHHHHH--hCCCCc-cHHHHHHHHHHh
Confidence 11111 22222 22234445555 566665 578887777665
No 443
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=1.6 Score=49.44 Aligned_cols=101 Identities=16% Similarity=0.011 Sum_probs=80.2
Q ss_pred HHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000176 1760 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1838 (1924)
Q Consensus 1760 ~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar 1838 (1924)
....+|..|...|.+++...|..+..|.+.+..+++. +++.+.+-..||++..|+. +...+.++++..+...++.|.
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHhhccccHHH
Confidence 3445678888899999988888889999999988888 8999999999999988776 577888888888888889999
Q ss_pred HHHHHHHHhC-----CCCHHHHHHHHHHH
Q 000176 1839 SMFEGILSEY-----PKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1839 ~lfe~aL~~~-----Pk~~dlw~~y~~le 1862 (1924)
..+.++.... |.-.++|..+.+.-
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999885442 23356787766543
No 444
>PRK10811 rne ribonuclease E; Reviewed
Probab=90.85 E-value=0.48 Score=63.26 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=52.4
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCC---------CCCCCCCCEEEEEEEEEecc
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDP---------LSGYDEGQFVKCKVLEISRT 1322 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p---------~~~~~~G~~v~~~Vl~vd~~ 1322 (1924)
+|.|+.|+|.+|.++=.++||+||.+..||+|+.|+...+..++ ...+++||.|-|.|..-...
T Consensus 38 vGnIYkGkVenIvPGInAAFVDIG~gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeILVQV~KEa~g 110 (1068)
T PRK10811 38 KANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERG 110 (1068)
T ss_pred ccceEEEEEecccCCcceeEEEecCCcceEEEhhhccccccccccccccccccccccCCCCEEEEEEeecccC
Confidence 89999999999999877999999999999999999964332221 23578999999999875544
No 445
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.79 E-value=16 Score=49.23 Aligned_cols=179 Identities=15% Similarity=0.201 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhCCh
Q 000176 1693 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQN 1765 (1924)
Q Consensus 1693 kAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~i~~~l~~i~~~~gk~ 1765 (1924)
.|...++-+++..+...+.| ..+.+.|..+...+.+ ..+.|+..++||+..+... .....++.+|.+.+..
T Consensus 39 ~ai~CL~~~~~~~~l~p~~e-a~~~l~la~iL~~eT~-n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQE-ARVRLRLASILLEETE-NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHhccCCCCHHHH-HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35555666665445444444 4678888888887765 4799999999998777431 4556677888888887
Q ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHH-----Hhc-CHHHHHHHHHHHHHhCC--CCChHHHHHHH--HHHHHHcCCH
Q 000176 1766 KLADELLYKMIKKFKH-SCKVWLRRVQRL-----LKQ-QQEGVQAVVQRALLSLP--RHKHIKFISQT--AILEFKNGVA 1834 (1924)
Q Consensus 1766 e~A~~~fe~~lk~~~~-~~~vw~~~a~~l-----~~~-~~~~A~~l~~ral~~~p--~~~~~~~~~~~--A~le~~~g~~ 1834 (1924)
. |.....+++..+.. ....|....+|+ +.. ++..|.+.++....... .+.++.+...+ +.+....+.+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 99999999987754 334455444444 223 78889999999887763 33333333333 3344466778
Q ss_pred HHHHHHHHHHHHhC----------CCCHHHHHHHHHHHH--HcCCHHHHHHH
Q 000176 1835 DRGRSMFEGILSEY----------PKRTDLWSIYLDQEI--RLGDVDLIRGL 1874 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~~----------Pk~~dlw~~y~~le~--k~gd~~~ar~l 1874 (1924)
+.+.+.++++.... +...++|....++.. ..|+++.+...
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~ 247 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQK 247 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888874432 224667888888665 56776665544
No 446
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.60 E-value=8 Score=49.57 Aligned_cols=145 Identities=14% Similarity=0.075 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
|-..+.-|...|+++.|.++|.++-. | .....+|-+. +.+.|..+-+++ ......+.+|..-|+-.-+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~-~-------~dai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADL-F-------KDAIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAEDLDE 836 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcch-h-------HHHHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHhHHh
Confidence 33344455666677777777665431 1 1222333334 555555444433 2222334556666666667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1910 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~ 1910 (1924)
+|.+.+|..+|-.+ ..|+ .-++||-+.|..+....+.++ ..++.+....+.+..-.+..|+.+.++.
T Consensus 837 hgkf~eaeqlyiti--~~p~------~aiqmydk~~~~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 837 HGKFAEAEQLYITI--GEPD------KAIQMYDKHGLDDDMIRLVEK-----HHGDHLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred hcchhhhhheeEEc--cCch------HHHHHHHhhCcchHHHHHHHH-----hChhhhhHHHHHHHHHHHhccChhHHHH
Confidence 77777776665432 1232 134566666666666666555 3444444556666655555677777777
Q ss_pred HHHHHHHHHH
Q 000176 1911 VKQKAMEYVE 1920 (1924)
Q Consensus 1911 v~~rAle~v~ 1920 (1924)
-|-.|-+|-.
T Consensus 904 ~flea~d~ka 913 (1636)
T KOG3616|consen 904 HFLEAGDFKA 913 (1636)
T ss_pred HHHhhhhHHH
Confidence 7777666543
No 447
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.55 E-value=0.4 Score=36.81 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
++...|..+++.|++++|+..|++++..+|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56778888888899999999999999999874
No 448
>PRK10811 rne ribonuclease E; Reviewed
Probab=90.36 E-value=0.59 Score=62.47 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=55.0
Q ss_pred CCCCEEEEEEEEEee--ceEEEEeCCCcEEEEECccCCCcccCC---------CCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1366 SPNMIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDGYVES---------PEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~--~G~fV~l~~~v~g~v~~selsd~~~~~---------~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
.+|.++.|+|.+|.+ .++||+||.+..||+++++....+..+ ....+++||.|-+.|..--..++...|
T Consensus 37 ~vGnIYkGkVenIvPGInAAFVDIG~gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeILVQV~KEa~gtKGp~L 116 (1068)
T PRK10811 37 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 (1068)
T ss_pred CccceEEEEEecccCCcceeEEEecCCcceEEEhhhccccccccccccccccccccccCCCCEEEEEEeecccCCCCCce
Confidence 479999999999976 689999999999999999996543211 134588999999998775544444444
Q ss_pred Eeec
Q 000176 1435 TLKT 1438 (1924)
Q Consensus 1435 Slk~ 1438 (1924)
|.+-
T Consensus 117 Tt~I 120 (1068)
T PRK10811 117 TTFI 120 (1068)
T ss_pred eeeE
Confidence 4443
No 449
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.97 E-value=0.68 Score=35.86 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
.+|+.++..++.. ++++|+..|+++++..|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555666666666 666666666666665554
No 450
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.96 E-value=50 Score=49.20 Aligned_cols=230 Identities=16% Similarity=0.161 Sum_probs=146.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHH
Q 000176 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1750 (1924)
Q Consensus 1673 ~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~e--e~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~ 1750 (1924)
++++-|..-+..--....+.+-.-.++|++-....+. ...-.+.|+.++.+....| ..+.|....-.|.... ..+
T Consensus 1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG--~~q~A~nall~A~e~r-~~~ 1703 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG--HLQRAQNALLNAKESR-LPE 1703 (2382)
T ss_pred ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc--cHHHHHHHHHhhhhcc-cch
Confidence 3667887776654444445555556667765553321 1122379999999999899 5588887777776655 458
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhc-CC----------------CHHHHHHHHHHHHhc---CHHHHHHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKF-KH----------------SCKVWLRRVQRLLKQ---QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~-~~----------------~~~vw~~~a~~l~~~---~~~~A~~l~~ral~ 1810 (1924)
++...|.++.+.|+...|..+++..+.++ ++ ..++-+.++.|.... ..++....|+.+.+
T Consensus 1704 i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~a 1783 (2382)
T KOG0890|consen 1704 IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKA 1783 (2382)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999654 32 133455666666655 56777899999999
Q ss_pred hCCCCC--hHHHHHHHHHHHH--------HcCCHHH---HHHHHHHHHH--------hCCCCHHHHHHHHHHHH---Hc-
Q 000176 1811 SLPRHK--HIKFISQTAILEF--------KNGVADR---GRSMFEGILS--------EYPKRTDLWSIYLDQEI---RL- 1865 (1924)
Q Consensus 1811 ~~p~~~--~~~~~~~~A~le~--------~~g~~e~---Ar~lfe~aL~--------~~Pk~~dlw~~y~~le~---k~- 1865 (1924)
.+|... |..+-..|..++. +.|++.. |...|.+++. +-|+-..+|..|+.-.. +.
T Consensus 1784 il~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~ 1863 (2382)
T KOG0890|consen 1784 ILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAP 1863 (2382)
T ss_pred HcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCC
Confidence 999542 3333333444433 4556666 4444456653 34666678888643322 22
Q ss_pred ------CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH--cCCHHHHH
Q 000176 1866 ------GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS--VGEEERIE 1909 (1924)
Q Consensus 1866 ------gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~--~G~~~~~~ 1909 (1924)
++....-.+.++++. .+||- .|+..|-++-.+ |-+.+-+.
T Consensus 1864 r~ei~s~~~~~in~~i~~~~~-~lp~Y---~f~ta~sQLlSRicH~~~dV~~ 1911 (2382)
T KOG0890|consen 1864 RGEIVSKNLKLINSLIEEALE-HLPTY---QFYTAYSQLLSRICHPNQDVAR 1911 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHHH-hCcch---HHHHHHHHHHHHHcCCchHHHH
Confidence 234444556666666 56652 356667666443 44444333
No 451
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.96 E-value=0.56 Score=36.51 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
.+|...|..++..|+++.|...|+++|+.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666777777777777777766664
No 452
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.84 E-value=8.3 Score=49.11 Aligned_cols=207 Identities=14% Similarity=0.168 Sum_probs=99.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH-HHH--cCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 000176 1678 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL-ENE--YGNPPEEAVVKVFQRALQYCDPKKVHLA 1754 (1924)
Q Consensus 1678 W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~l-e~~--~g~~~~e~a~~vferAl~~~~~~~i~~~ 1754 (1924)
|..++.-.+..-+++-||+.|-|.-. . -|+.++.- +.+ .|+ ..+... ....+.+ ..-+..
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRd-l----------~~L~li~EL~~~k~rge-~P~~iL--lA~~~Ay---~gKF~E 650 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRD-L----------RYLELISELEERKKRGE-TPNDLL--LADVFAY---QGKFHE 650 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhc-c----------HHHHHHHHHHHHHhcCC-CchHHH--HHHHHHh---hhhHHH
Confidence 66666666677788888888887652 2 25544432 222 222 011111 0111111 123445
Q ss_pred HHHHHHHhCChHHHHHHHHHHHH-----hc-----CCC-HHHHHHHHHHHHhc-CHHHHHHHH------HHHHHhCCCCC
Q 000176 1755 LLGLYERTEQNKLADELLYKMIK-----KF-----KHS-CKVWLRRVQRLLKQ-QQEGVQAVV------QRALLSLPRHK 1816 (1924)
Q Consensus 1755 l~~i~~~~gk~e~A~~~fe~~lk-----~~-----~~~-~~vw~~~a~~l~~~-~~~~A~~l~------~ral~~~p~~~ 1816 (1924)
.+.++.++|.-.+|.++|..+-- .| ++. ..+....|.+.... ++..|.+++ ++|+....++.
T Consensus 651 AAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~g 730 (1081)
T KOG1538|consen 651 AAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHG 730 (1081)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhccc
Confidence 56677788888888888764321 11 111 22333445554444 555555443 23333333332
Q ss_pred hHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1817 HIKF---------------ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1817 ~~~~---------------~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
.+++ +...|+.+.+...+.-|-++|.++= | .....+++...++...|-.+-|+.
T Consensus 731 W~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g-------D-~ksiVqlHve~~~W~eAFalAe~h--- 799 (1081)
T KOG1538|consen 731 WVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG-------D-LKSLVQLHVETQRWDEAFALAEKH--- 799 (1081)
T ss_pred HHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc-------c-HHHHhhheeecccchHhHhhhhhC---
Confidence 2222 2222222223333333333333320 0 122344555566777766666652
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1882 ~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rA 1915 (1924)
| +-....+.-|.+|..+...+++|.+.|.||
T Consensus 800 --P-e~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 800 --P-EFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred --c-cccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 2 222256667777766666677777777665
No 453
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.78 E-value=10 Score=47.34 Aligned_cols=172 Identities=13% Similarity=0.096 Sum_probs=105.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH---HHHcCCCCHHHHHHHH
Q 000176 1663 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL---ENEYGNPPEEAVVKVF 1739 (1924)
Q Consensus 1663 ~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~l---e~~~g~~~~e~a~~vf 1739 (1924)
..-.+|..+|...+..++.+..+.++|+.+.|.+..+|||-.+. ..|...... ....|+ ++=-|
T Consensus 28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e--------~~~~~~F~~~~~~~~~g~-----~rL~~ 94 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE--------RAFHPSFSPFRSNLTSGN-----CRLDY 94 (360)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHHHHhhhhhcccccCc-----cccCC
Confidence 34456789999999999999999999999999999999996443 133333211 111111 00000
Q ss_pred HHHHhcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH-hc-CHHHHHHHHHHHHHhCC
Q 000176 1740 QRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRRVQRLL-KQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1740 erAl~~~~~~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-~~~vw~~~a~~l~-~~-~~~~A~~l~~ral~~~p 1813 (1924)
.+ ..+. -..+.++..+.+.|-+.-|.+..+-+++..|. ++---..+++++. +. +++--.++++.......
T Consensus 95 ~~----~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 95 RR----PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred cc----ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhh
Confidence 00 0111 23344555677788888888888888887765 5444444444443 33 66666666665544211
Q ss_pred CC---ChHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCC
Q 000176 1814 RH---KHIKFISQTAILEFKNGVA---------------DRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1814 ~~---~~~~~~~~~A~le~~~g~~---------------e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.. .-+.+-...|..++..++. +.|+..+.+|+..+|.-
T Consensus 171 ~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 171 RNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 11 0123445555555556665 89999999999988853
No 454
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.45 E-value=19 Score=42.93 Aligned_cols=148 Identities=11% Similarity=-0.014 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH--H--HHHHHHHHHHhc-CHHHHHHHHHHH
Q 000176 1735 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC--K--VWLRRVQRLLKQ-QQEGVQAVVQRA 1808 (1924)
Q Consensus 1735 a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~--~--vw~~~a~~l~~~-~~~~A~~l~~ra 1808 (1924)
|-...++.++-.|.+ -.|..--..+...|+.+.-...+++.+-++.... . +.-.|+--+... -+++|++.-.||
T Consensus 122 a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ra 201 (491)
T KOG2610|consen 122 AAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRA 201 (491)
T ss_pred HHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhh
Confidence 344455555555543 2333333344555666666666666655432111 1 112333334444 666666666666
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1809 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1809 l~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~----~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
++.++.+ .-+-...|..+...|+..+|.+.++.-=...... .+-|...+-+++..+.++.|..+|+|-+-..+.
T Consensus 202 lqiN~~D--~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~ 279 (491)
T KOG2610|consen 202 LQINRFD--CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLE 279 (491)
T ss_pred ccCCCcc--hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhh
Confidence 6665543 1222333444445566666666655543222211 112334444555556666666666665543333
No 455
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.97 E-value=24 Score=43.89 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHh---c-CHHHHHHHHHHHHHhCCCCChHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKK----FKHSCKVWLRRVQRLLK---Q-QQEGVQAVVQRALLSLPRHKHIKFI 1821 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~----~~~~~~vw~~~a~~l~~---~-~~~~A~~l~~ral~~~p~~~~~~~~ 1821 (1924)
.+-..+.-.|....+|+....+.+.+-.. ......+-..||-.+-+ . +.++|+.++..++...... .++++
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~-~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP-DPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC-ChHHH
Confidence 44455666688888899999999888776 45678888899999988 4 9999999999988776444 36888
Q ss_pred HHHHHHHH----H-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-H---HHHHHH---HHHHhcCCCc
Q 000176 1822 SQTAILEF----K-----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-D---LIRGLF---ERAISLSLPP 1885 (1924)
Q Consensus 1822 ~~~A~le~----~-----~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~-~---~ar~lf---eral~~~~~p 1885 (1924)
..+|..|- . ....++|...|.++....|+...-.+ ++-++.-.|.. + ++|.+- ...+..+-..
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN-~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGIN-AATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHH-HHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88888764 1 11478999999999999876554444 44455555532 2 223322 1112112222
Q ss_pred hhHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHH
Q 000176 1886 KKMKFLFKKYLEY--EKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1886 k~~k~lw~~yl~~--E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.++..+|..---+ ..-.||.+.+...+++|...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3344677654444 44469999999999998754
No 456
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.92 E-value=9 Score=43.69 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1816 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~ 1816 (1924)
.++..|+..+...++|-++.+.....++.++.+.++++..|...... +.++|++-|+.+|...|.-.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 57788888888889998999999999999999999999999988888 99999999999999887654
No 457
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.78 E-value=18 Score=45.20 Aligned_cols=137 Identities=15% Similarity=0.107 Sum_probs=83.2
Q ss_pred hcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC--------------------------CCHHHHH---HHHHHH
Q 000176 1744 QYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFK--------------------------HSCKVWL---RRVQRL 1793 (1924)
Q Consensus 1744 ~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~--------------------------~~~~vw~---~~a~~l 1793 (1924)
+.+|-. ...++++.++.+.|+++.|.++.++++-.|. .+..+|. +|+..+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 334443 7888899999999999999999999874331 2333443 556666
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHcCC
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-T----DLWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~-~----dlw~~y~~le~k~gd 1867 (1924)
.+. -+..|.+..+-.+..+|..+..-+....=.+-.+.++++--..+++.......++ . .+-+..+-.++..++
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~ 193 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEK 193 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcC
Confidence 666 7888888888888888875433333333333346666666666666554421111 0 122223333334444
Q ss_pred H---------------HHHHHHHHHHHh
Q 000176 1868 V---------------DLIRGLFERAIS 1880 (1924)
Q Consensus 1868 ~---------------~~ar~lferal~ 1880 (1924)
. +.|+..+.+|+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 194 EESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred ccccccccccccccchhHHHHHHHHHHH
Confidence 4 778888888776
No 458
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=88.59 E-value=5.3 Score=48.33 Aligned_cols=121 Identities=15% Similarity=0.130 Sum_probs=64.2
Q ss_pred CCCCchHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCCcchhhHHHHHHHHHHHHHHc
Q 000176 1655 KDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQ---TINIREENEKLNIWVAYFNLENEY 1727 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s----~~~W~~y~~~~~~~~e~dkAr~v~eraL~---~i~~~ee~ekl~lWiayl~le~~~ 1727 (1924)
++-..-++.|+.++..-..+ +.+|.++...|.-++++++|.+...--|. .+..+...- .-.-.+.|.....
T Consensus 31 gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA--KssgNLGNtlKv~ 108 (639)
T KOG1130|consen 31 GDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA--KSSGNLGNTLKVK 108 (639)
T ss_pred cchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc--cccccccchhhhh
Confidence 44667788899998765443 44556666666667777777665433221 122111000 0111233344445
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCC-------------hHHHHHHHHHHHHhc
Q 000176 1728 GNPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQ-------------NKLADELLYKMIKKF 1779 (1924)
Q Consensus 1728 g~~~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk-------------~e~A~~~fe~~lk~~ 1779 (1924)
|.+ ++|.....|-+..... ...++.++++|...|+ .+++.+.|+.+++-|
T Consensus 109 G~f--deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 109 GAF--DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccc--chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 544 5555555555543321 2678888888866554 245555555555443
No 459
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.58 E-value=2.2 Score=49.63 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=38.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH
Q 000176 1830 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK 1889 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k 1889 (1924)
+.|+.|+|.++|+.+|+..|.+.++...|..+.....++-.|-.+|-+|+. +.|-+.+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--isP~nse 185 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT--ISPGNSE 185 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee--eCCCchH
Confidence 456677777777777777777777777777766666666667777777666 5554443
No 460
>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis]
Probab=88.42 E-value=1.4 Score=46.96 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=52.9
Q ss_pred CCCEEEEEEEEEecCcCeEEEEe--------CCceEEEEeccccccccc--CCCCCCCCCCCEEEEEEEEEecccCCceE
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQI--------GPHLYGRVHFTELKNICV--SDPLSGYDEGQFVKCKVLEISRTVRGTFH 1328 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l--------~~~~~G~v~~selsd~~~--~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~ 1328 (1924)
.|++|+++|.+++.. .+-|+| +...+|+|+..|+..--. .++...|.+|+.|.++|++... ...
T Consensus 68 ~G~IVtarV~~i~~r--fAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~----~~~ 141 (193)
T KOG3409|consen 68 VGAIVTARVSRINLR--FAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGD----GSN 141 (193)
T ss_pred cCcEEEEEEEeeccc--eeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCC----CCc
Confidence 899999999999987 666654 456889999998854221 2367789999999999999553 235
Q ss_pred EEEeee
Q 000176 1329 VELSLR 1334 (1924)
Q Consensus 1329 i~LSlr 1334 (1924)
..|+.-
T Consensus 142 y~LTtA 147 (193)
T KOG3409|consen 142 YLLTTA 147 (193)
T ss_pred EEEEEe
Confidence 666663
No 461
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.64 E-value=4.1 Score=46.33 Aligned_cols=100 Identities=14% Similarity=0.032 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfe 1876 (1924)
+++.|...|.|||...|.. +..|.+-|..+++..+++.+..-..++++..|+....-+.+.........++.|...+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~--~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTV--ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhchHHHHHHHHHhcCCCc--chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 6899999999999999987 47899999999999999999999999999999988888888888888889999999999
Q ss_pred HHHhc--CCCchhHHHHHHHHHHH
Q 000176 1877 RAISL--SLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1877 ral~~--~~~pk~~k~lw~~yl~~ 1898 (1924)
||.++ ..++.....||+...+.
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHH
Confidence 99652 12222333678777654
No 462
>PRK11712 ribonuclease G; Provisional
Probab=87.54 E-value=1.1 Score=57.65 Aligned_cols=62 Identities=23% Similarity=0.329 Sum_probs=49.3
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccc---cCC---------CCCCCCCCCEEEEEEEEEe
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC---VSD---------PLSGYDEGQFVKCKVLEIS 1320 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~---~~~---------p~~~~~~G~~v~~~Vl~vd 1320 (1924)
+|.++.|+|.+|.|+=.++||+||.+..||+|++|+.... ..+ ....+++||.|-|.|..-.
T Consensus 38 vGnIY~G~V~~v~pg~~AAFVdIG~~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~Ke~ 111 (489)
T PRK11712 38 VGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVKDP 111 (489)
T ss_pred cccEEEEEEeecCCCCceeEEeeCCCccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEeCC
Confidence 8999999999999987799999999999999999984211 000 1234789999999988744
No 463
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.34 E-value=1.1 Score=34.88 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
.+|+..|..++.. ++++|...|++||+..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566666666666 666666666666666553
No 464
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.50 E-value=1e+02 Score=38.95 Aligned_cols=219 Identities=13% Similarity=0.152 Sum_probs=129.8
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhh---HHHHHHHHHH------HHHHcCCCCHHHHHHHHHHHHhcC---CCH-----
Q 000176 1687 SMADVEKARSIAERALQTINIREENE---KLNIWVAYFN------LENEYGNPPEEAVVKVFQRALQYC---DPK----- 1749 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~e---kl~lWiayl~------le~~~g~~~~e~a~~vferAl~~~---~~~----- 1749 (1924)
..|=+++|.+..++++.......+.+ +...-+..+- .....++ .++|.+-...+++.+ |..
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~--~~~al~~i~dm~~w~~r~p~~~Llr~ 364 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGD--YVEALEEIVDMKNWCTRFPTPLLLRA 364 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 45668899999999987543221222 1111122222 2334564 377766666665544 331
Q ss_pred ---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHH----HHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh----
Q 000176 1750 ---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL----RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH---- 1817 (1924)
Q Consensus 1750 ---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~----~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~---- 1817 (1924)
.++.-++.+...-+.++.|...|..+.+.- ...++|. ++|-.|+++ +.+.-.++++. ..|.+.+
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ss 440 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSS 440 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchH
Confidence 455555555566788999999999999864 3444443 455555554 44433333333 2333221
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH----HHHcCCHHHHHHHHHHHHhc--CCC
Q 000176 1818 ----IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIYLDQ----EIRLGDVDLIRGLFERAISL--SLP 1884 (1924)
Q Consensus 1818 ----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d---lw~~y~~l----e~k~gd~~~ar~lferal~~--~~~ 1884 (1924)
..+++.+|-|.|.++++.+|+..+...|+.. +..| +-..+.-+ ....|+..++++...-++.. +++
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP 519 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence 2578888999999999999999999999865 3333 22222222 33568999999988888762 344
Q ss_pred chhHHHHHHHHH--HHHHHcCC--HHHHHHHHH
Q 000176 1885 PKKMKFLFKKYL--EYEKSVGE--EERIEYVKQ 1913 (1924)
Q Consensus 1885 pk~~k~lw~~yl--~~E~~~G~--~~~~~~v~~ 1913 (1924)
.-.. .+|.--+ ++....|+ .+...+.|.
T Consensus 520 Di~v-qLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 520 DIPV-QLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred CchH-HHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3333 6776543 56666777 444444443
No 465
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.42 E-value=10 Score=42.38 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH----HHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI----KFI 1821 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~---~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~----~~~ 1821 (1924)
..|..++..|.+.|++++|.+.|.++..... +..++|+..+...+.. ++..+...+.+|-........+ .+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 6778888889999999999999988776542 3456777777777777 7888877777776554332111 223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
..-|..++..+++..|-.+|-.++..+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 3333444567788888888877765554
No 466
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.27 E-value=85 Score=37.82 Aligned_cols=203 Identities=15% Similarity=0.128 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCC-------cchh--hHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Q 000176 1675 SFVWIKYMAFMLSMA-DVEKARSIAERALQTINI-------REEN--EKLNIWVAYFNLENEYGNP-PEEAVVKVFQRAL 1743 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~-e~dkAr~v~eraL~~i~~-------~ee~--ekl~lWiayl~le~~~g~~-~~e~a~~vferAl 1743 (1924)
+...++.+......+ +++.|...++||...++. ..+. -++.+-..+++.+..-+.+ ..++|..+.+-+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 345566667777888 999999999999987532 1111 1234445555555555532 1234555555554
Q ss_pred hcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCC-CChH
Q 000176 1744 QYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLSLPR-HKHI 1818 (1924)
Q Consensus 1744 ~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~---~~~~A~~l~~ral~~~p~-~~~~ 1818 (1924)
.-.+. ..++.-.+.+..+.++.+.+.+.+.+|+..+......|......+... ....|...+...|..... ...
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~- 193 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED- 193 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh-
Confidence 44454 377767777777789999999999999998764555555555555333 555666666555543222 211
Q ss_pred HHHHHHHHHHH----Hc-CC------HHHHHHHHHHHHHhC--CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1819 KFISQTAILEF----KN-GV------ADRGRSMFEGILSEY--PKR--------TDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1819 ~~~~~~A~le~----~~-g~------~e~Ar~lfe~aL~~~--Pk~--------~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
. |..-+-+.. .. ++ .+....+++.+-+.. |=. .-+|.. +.-.++.++|+.|...|+-
T Consensus 194 ~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 194 Q-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred H-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHH
Confidence 1 333332221 22 11 444445555433322 111 225775 6777899999999999998
Q ss_pred HHh
Q 000176 1878 AIS 1880 (1924)
Q Consensus 1878 al~ 1880 (1924)
+++
T Consensus 272 al~ 274 (278)
T PF08631_consen 272 ALH 274 (278)
T ss_pred HHH
Confidence 775
No 467
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.23 E-value=1.2 Score=34.06 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHS 1782 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~ 1782 (1924)
.++.++.+|.+.|++++|.+.|+++++.||++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 46777788888888888888888888888754
No 468
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.12 E-value=28 Score=39.30 Aligned_cols=73 Identities=11% Similarity=-0.005 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--ChHHHHHHHHHHHHHcCCHHHH
Q 000176 1765 NKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKNGVADRG 1837 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~-~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~--~~~~~~~~~A~le~~~g~~e~A 1837 (1924)
-+.|+..|-.+-... -+.+.+-+.+|.||.+.+.++|..+|-++|...+.. -+++++..+|.++++.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345666666665433 256777777777777667778888888887766544 2457777777777777777765
No 469
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.90 E-value=74 Score=43.34 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1856 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1856 ~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
..++.+|...|-+++...++|-++. +.+..|
T Consensus 1283 eeli~~Yq~rGyFeElIsl~Ea~LG--LERAHM 1313 (1666)
T KOG0985|consen 1283 EELIEYYQDRGYFEELISLLEAGLG--LERAHM 1313 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHH
Confidence 3444455556667777777776665 444444
No 470
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=85.76 E-value=3.1 Score=40.84 Aligned_cols=60 Identities=23% Similarity=0.451 Sum_probs=49.1
Q ss_pred cccccccCCCCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEE
Q 000176 489 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556 (1924)
Q Consensus 489 ~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v 556 (1924)
+++.+-+ ..|-+|.|+|..+...-+.+++++.+.++|+.... ..++|..|.+|..|+...
T Consensus 15 ~fi~lG~-~~gk~V~G~I~hvv~ddLYIDfG~KFhcVc~rp~~-------~~~~y~~G~rV~lrLkdl 74 (104)
T PF10246_consen 15 PFIQLGD-PEGKIVIGKIFHVVDDDLYIDFGGKFHCVCKRPAV-------NGEKYVRGSRVRLRLKDL 74 (104)
T ss_pred hhhhcCC-ccCCEEEEEEEEEecCceEEEeCCceeEEEecccc-------cccccccCCEEEEEECCH
Confidence 4566666 58999999999999999999999999999984432 235799999999988644
No 471
>PRK11712 ribonuclease G; Provisional
Probab=85.68 E-value=1.6 Score=56.01 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=45.8
Q ss_pred CCCCEEEEEEEEEee--ceEEEEeCCCcEEEEECccCCCc--cc----------CCCCccCCCCcEEEEEEEE
Q 000176 1366 SPNMIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDG--YV----------ESPEKEFPIGKLVAGRVLS 1424 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~--~G~fV~l~~~v~g~v~~selsd~--~~----------~~~~~~f~~G~~V~~kVl~ 1424 (1924)
-+|.++.|+|.+|.+ .++||+||.+-.||+|++|+... +. ....+.+++||.|-+.|+.
T Consensus 37 ~vGnIY~G~V~~v~pg~~AAFVdIG~~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~K 109 (489)
T PRK11712 37 IVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVK 109 (489)
T ss_pred ccccEEEEEEeecCCCCceeEEeeCCCccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEe
Confidence 489999999999977 58999999999999999998421 10 0112347889998888765
No 472
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.67 E-value=23 Score=52.43 Aligned_cols=179 Identities=16% Similarity=0.115 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc---CCC-----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQY---CDP-----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1786 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~---~~~-----~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw 1786 (1924)
.-|.+.+..-..+. ...+-.-.++|++-. .+. .+.|+.+|.+...+|+++.|....-.|... .-+.++
T Consensus 1630 d~W~~Rl~~tq~s~--~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--r~~~i~ 1705 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSF--RIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--RLPEIV 1705 (2382)
T ss_pred hhHHHHHHHhchhH--HHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--ccchHH
Confidence 46887665533333 223333345555532 212 299999999999999999998888777654 378999
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhC-CC----------CC----hHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhC
Q 000176 1787 LRRVQRLLKQ-QQEGVQAVVQRALLSL-PR----------HK----HIKFISQTAILEFKNGV--ADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1787 ~~~a~~l~~~-~~~~A~~l~~ral~~~-p~----------~~----~~~~~~~~A~le~~~g~--~e~Ar~lfe~aL~~~ 1848 (1924)
...|.+++.+ +...|..+++..+..+ |. .. +-.+...++.+....++ .+.-.+.|..+.+.+
T Consensus 1706 ~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1706 LERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence 9999999999 9999999999999543 33 10 11356667777666665 457788999999999
Q ss_pred CCCHH----HHHHHHHHHH--------HcCCHHH---HHHHHHHHHhcC---CCchhHHHHHHHHHHH
Q 000176 1849 PKRTD----LWSIYLDQEI--------RLGDVDL---IRGLFERAISLS---LPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1849 Pk~~d----lw~~y~~le~--------k~gd~~~---ar~lferal~~~---~~pk~~k~lw~~yl~~ 1898 (1924)
|...+ +=..|..++. ++|++.. |...|.+++..+ +.. .|-.+...|+++
T Consensus 1786 ~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyq-smPRllTLWLD~ 1852 (2382)
T KOG0890|consen 1786 PEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQ-SMPRLLTLWLDI 1852 (2382)
T ss_pred ccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHH-hhhHHHHHHHhh
Confidence 95433 2222333332 3466666 555567888632 221 233566777774
No 473
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.50 E-value=7.2 Score=48.34 Aligned_cols=146 Identities=13% Similarity=0.087 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH-HhCCC------CChHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL-LSLPR------HKHIKFI 1821 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral-~~~p~------~~~~~~~ 1821 (1924)
++...-...|.+..+...+..-.+-+...-.+++...+...++++-. ++.+|..++-+.- ..-|. .-...+|
T Consensus 207 ~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 207 ELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheee
Confidence 44444445555555555554444444444456666666667777666 7777776665432 11111 1123578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEY------------------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1883 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~------------------Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~ 1883 (1924)
..++..+++.|.+.-+..+|.++|++. .++..+.+...-++...|++-.|-.+|..+++ .
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~--v 364 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH--V 364 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH--H
Confidence 889999999999999999999999621 24567888888899999999999999999998 5
Q ss_pred CchhHHHHHHHHHHH
Q 000176 1884 PPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1884 ~pk~~k~lw~~yl~~ 1898 (1924)
...++ .+|.+.++.
T Consensus 365 fh~nP-rlWLRlAEc 378 (696)
T KOG2471|consen 365 FHRNP-RLWLRLAEC 378 (696)
T ss_pred HhcCc-HHHHHHHHH
Confidence 55555 699998874
No 474
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.49 E-value=21 Score=45.69 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=97.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------hcCCcchhhH-H--HHHHHHHHHHHH
Q 000176 1667 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ-----------------TINIREENEK-L--NIWVAYFNLENE 1726 (1924)
Q Consensus 1667 ll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~-----------------~i~~~ee~ek-l--~lWiayl~le~~ 1726 (1924)
+|..+|...+-.++.+.+...+|+.+-|+.+.+|||- ..||.....| + -+| .||....+
T Consensus 276 lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~-r~m~~l~~ 354 (665)
T KOG2422|consen 276 LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALF-RYMQSLAQ 354 (665)
T ss_pred eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHH-HHHHHHHh
Confidence 4456799999999999999999999999999888885 2222211112 1 223 45555567
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhCChHHHHHHHHHHHHh--cCC--CHHHHHHHHHHHHhc-C-
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKK--FKH--SCKVWLRRVQRLLKQ-Q- 1797 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~--~~~--~~~vw~~~a~~l~~~-~- 1797 (1924)
.| -..+|.+..+-.++..|.. -+.+.+=.+..++.+|+-..++++..-.- +.+ +...-+.+|.|++.. .
T Consensus 355 RG--C~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~ 432 (665)
T KOG2422|consen 355 RG--CWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEE 432 (665)
T ss_pred cC--ChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCCh
Confidence 77 4599999999999988763 22222222345677788888888776332 222 233345777788777 3
Q ss_pred --HHHHHHHHHHHHHhCC
Q 000176 1798 --QEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1798 --~~~A~~l~~ral~~~p 1813 (1924)
-+.|+.++.+|++.+|
T Consensus 433 ~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 433 DDRQSALNALLQALKHHP 450 (665)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 6788999999999888
No 475
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=85.42 E-value=13 Score=45.22 Aligned_cols=129 Identities=15% Similarity=0.028 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhCChHHHHHHHHHHH--Hhc-C---CCHHHHHHHHHHHHhc-CHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-----KVHLALLGLYERTEQNKLADELLYKMI--KKF-K---HSCKVWLRRVQRLLKQ-QQEG 1800 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-----~i~~~l~~i~~~~gk~e~A~~~fe~~l--k~~-~---~~~~vw~~~a~~l~~~-~~~~ 1800 (1924)
..-...|+.|++.--.. -+|.++++.|...++|++|.+....-+ .+. . ...+.--++++.+.-. .+++
T Consensus 34 raGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fde 113 (639)
T KOG1130|consen 34 RAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDE 113 (639)
T ss_pred hhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccch
Confidence 66677888888775432 788888888888888888887654322 111 0 1122223344444333 5555
Q ss_pred HHHHHHHHHHhCCC---C-ChHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1801 VQAVVQRALLSLPR---H-KHIKFISQTAILEFKNGV-------------ADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1801 A~~l~~ral~~~p~---~-~~~~~~~~~A~le~~~g~-------------~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
|.-...|-|..... + -...+++.+|..|...|. .+++++.|++++..|..+..+...+.|-
T Consensus 114 A~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr 191 (639)
T KOG1130|consen 114 ALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDR 191 (639)
T ss_pred HHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 55555444432110 0 012577888888876664 4677788888877766555554444443
No 476
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.94 E-value=15 Score=42.01 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
.++.+|+|.+...|++=++.+-...+|+.+|.+..+++.-+......=+.++|+.-|..++. +.|.-+
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldpsla 298 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPSLA 298 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChhhH
Confidence 56777777777777777777777777888888777777777777776777778888888777 555444
No 477
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.93 E-value=18 Score=46.26 Aligned_cols=99 Identities=12% Similarity=-0.012 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh-cC--CCchhHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPK-RTDLWSIYLDQEI-RLGDVDLIRGLFERAIS-LS--LPPKKMKFLFK 1893 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk-~~dlw~~y~~le~-k~gd~~~ar~lferal~-~~--~~pk~~k~lw~ 1893 (1924)
.++..|.+...+.|=+..|.+...-+++..|. ++-....++|.+. +..+|+-...+|+..=. .+ ..|. +.|.
T Consensus 343 L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN---~~yS 419 (665)
T KOG2422|consen 343 LALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN---FGYS 419 (665)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC---chHH
Confidence 34556666666777788888887777877776 5556666666554 66677777777776522 11 2221 1222
Q ss_pred HHH-HHHHHcC---CHHHHHHHHHHHHHHHH
Q 000176 1894 KYL-EYEKSVG---EEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1894 ~yl-~~E~~~G---~~~~~~~v~~rAle~v~ 1920 (1924)
.-+ .|..... +.+.+..++.+|+...-
T Consensus 420 ~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 420 LALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 222 2222222 25667777777765543
No 478
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.90 E-value=1.6 Score=33.87 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
.+|...|.++.+.|+++.|...|+++++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4677777777777777777777777777766
No 479
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.84 E-value=1.2e+02 Score=41.28 Aligned_cols=179 Identities=16% Similarity=0.123 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1749 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl-~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~---- 1749 (1924)
.++..+-+.++...|...+|.+.+-+|= |.+.. .+-..+ ...+-.+ .-..+..++++..|..
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-------d~~~aa~lle~~-~~~L~~~-----~~lsll~~~~~~lP~~~l~~ 413 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG-------DPEMAADLLEQL-EWQLFNG-----SELSLLLAWLKALPAELLAS 413 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC-------CHHHHHHHHHhh-hhhhhcc-----cchHHHHHHHHhCCHHHHhh
Confidence 6677777777777777777766554443 11111 111111 1111111 1244556666666542
Q ss_pred --HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-----C---HHHHHH-HHHHHHhc-CHHHHHHHHHHHHHhCCCCCh
Q 000176 1750 --KVHLALLGLYERTEQNKLADELLYKMIKKFKH-----S---CKVWLR-RVQRLLKQ-QQEGVQAVVQRALLSLPRHKH 1817 (1924)
Q Consensus 1750 --~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-----~---~~vw~~-~a~~l~~~-~~~~A~~l~~ral~~~p~~~~ 1817 (1924)
.+-+.++-......++.+|..+..++....+. . .--|.. .+.+.+.. +++.|.++.++++...|....
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 33344444455678899999999888765543 1 113443 33444445 999999999999999987532
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH--HcC
Q 000176 1818 ---IKFISQTAILEFKNGVADRGRSMFEGILSEY----PKRTDLWSIYLDQEI--RLG 1866 (1924)
Q Consensus 1818 ---~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~----Pk~~dlw~~y~~le~--k~g 1866 (1924)
+.+++..+....-.|++++|+.+...+.+.. --...+|..+...++ .+|
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 4577788888888999999999999887652 223457887755443 455
No 480
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.82 E-value=5.1 Score=44.72 Aligned_cols=100 Identities=15% Similarity=0.094 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 000176 1676 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1755 (1924)
Q Consensus 1676 ~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l 1755 (1924)
..|..++.+|.+.|+++.|.+.|.|+...... ..-++++|+..+.+...++++ ..+.....+|-.......-|...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~d~--~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFGDW--SHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhccchHHHH
Confidence 56788999999999999999999999875543 334678999999999999954 88888888887765442112211
Q ss_pred -------HHHHHHhCChHHHHHHHHHHHHhc
Q 000176 1756 -------LGLYERTEQNKLADELLYKMIKKF 1779 (1924)
Q Consensus 1756 -------~~i~~~~gk~e~A~~~fe~~lk~~ 1779 (1924)
+-.+...++|..|.+.|-.+...|
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 112234566666666666665555
No 481
>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis]
Probab=84.80 E-value=4 Score=43.71 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCCCCEEEEEEEEEECCeEEEEeC--------CCeEEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEE
Q 000176 1161 VSIGQRVTGYVYKVDNEWALLTIS--------RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRL 1232 (1924)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~~~v~l~--------~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~vd~~~~~l~L 1232 (1924)
...|++|++.|..+...++.++|. ...+|.|+..++-....+.-.+.+.|.+|+.|.++|++.....+. .|
T Consensus 66 P~~G~IVtarV~~i~~rfAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~~y-~L 144 (193)
T KOG3409|consen 66 PFVGAIVTARVSRINLRFAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGSNY-LL 144 (193)
T ss_pred CccCcEEEEEEEeeccceeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCCcE-EE
Confidence 378999999999999888777652 257899999887654444456778899999999999996554443 34
Q ss_pred Ee
Q 000176 1233 VL 1234 (1924)
Q Consensus 1233 S~ 1234 (1924)
+.
T Consensus 145 Tt 146 (193)
T KOG3409|consen 145 TT 146 (193)
T ss_pred EE
Confidence 43
No 482
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=84.70 E-value=3.4 Score=42.87 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=41.9
Q ss_pred CCCeEEEEEEEEecCceEEEeCCCeEEeecCCCcccccccC-----------C--CCCCCCCCEEEEEEEEE
Q 000176 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVK-----------P--GKKFKVGAELVFRVLGV 556 (1924)
Q Consensus 498 ~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hlsd~~~~~-----------p--~~~f~vG~~vk~rVl~v 556 (1924)
+|+++.|+|++.++.|+.|+++=.-+-+||...|-+-..-+ . +-.|..|+.|++||..+
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslgFFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~ 74 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLGFFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESE 74 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEECCEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEecccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEE
Confidence 69999999999999999999962236889998886421111 1 12358999999999988
No 483
>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription]
Probab=84.25 E-value=3.6 Score=43.70 Aligned_cols=65 Identities=23% Similarity=0.419 Sum_probs=43.4
Q ss_pred CCcEEEEEEEEeecceEEEEEecCceeEEe--ec--cccCcc-------cccCcccccCCCcEEEEEEEEEecCCCee
Q 000176 1457 VGDIVIGQIKRVESYGLFITIENTNLVGLC--HV--SELSED-------HVDNIETIYRAGEKVKVKILKVDKEKRRI 1523 (1924)
Q Consensus 1457 ~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~--h~--sels~~-------~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri 1523 (1924)
.|++++|.|+.|...|+|+++++ ++-++ |. .++.-. +..+-.+...+|..|+.+|+...-+...|
T Consensus 81 KGEVvdgvV~~Vnk~G~F~~~GP--l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr~~~~~i 156 (170)
T KOG3298|consen 81 KGEVVDGVVTKVNKMGVFARSGP--LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTRVDETEI 156 (170)
T ss_pred CCcEEEEEEEEEeeeeEEEeccc--eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEEEeeeeE
Confidence 59999999999999999999976 33322 21 111111 11111236889999999999987555543
No 484
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=84.21 E-value=3.2 Score=43.08 Aligned_cols=60 Identities=27% Similarity=0.211 Sum_probs=45.7
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc--cc-----------CCCCccCCCCcEEEEEEEEEe
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG--YV-----------ESPEKEFPIGKLVAGRVLSVE 1426 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~--~~-----------~~~~~~f~~G~~V~~kVl~vd 1426 (1924)
+|+++.|+|++.+..|+.|.|+---+-+||.+.|... |- .+-.-+|..|+.|+.||.++.
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslgFFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~~ 75 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLGFFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESEI 75 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEECCEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEecccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEEE
Confidence 6999999999999999999999878899999998842 21 222335679999999998876
No 485
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=83.34 E-value=4.7 Score=38.63 Aligned_cols=65 Identities=23% Similarity=0.193 Sum_probs=51.2
Q ss_pred EEEEEEEEeecceEEE-EEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1460 IVIGQIKRVESYGLFI-TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1460 ~v~G~V~~v~~~GvFV-~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
.+.|.|+.+.+.+.|. .|++ +..=++|+|---.. -.-..-+||.|++.+-..|.+++||..-.|.
T Consensus 8 e~~G~V~e~Lp~~~frV~Len-G~~vla~isGKmR~----~rIrIl~GD~V~VE~spYDltkGRIiyR~~~ 73 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLEN-GVEVGAYASGRMRK----HRIRILAGDRVTLELSPYDLTKGRINFRHKD 73 (87)
T ss_pred EEEEEEEEECCCCEEEEEeCC-CCEEEEEeccceee----eeEEecCCCEEEEEECcccCCceeEEEEecC
Confidence 3789999999988885 7876 88889998752221 1223578999999999999999999987764
No 486
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=82.34 E-value=26 Score=41.87 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhCChHHHHHHHHHHHHhc---CCCHHHH---HHHHHHHHhc-----CH
Q 000176 1733 EAVVKVFQRALQYCDP---KKVHLALLGLYERTEQNKLADELLYKMIKKF---KHSCKVW---LRRVQRLLKQ-----QQ 1798 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~---~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~---~~~~~vw---~~~a~~l~~~-----~~ 1798 (1924)
++..+..+.|-+.... .++|.+.+.+|.+.|+.+.|.+.|.+...+- +...++. ++++-|+..+ ..
T Consensus 85 ~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~i 164 (393)
T KOG0687|consen 85 KELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESI 164 (393)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHH
Confidence 4444455555554333 3899999999999999999999998877653 2233332 3556666555 77
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
++|..++++.-.=...+ .+-...|.+.+.-.++..|-.+|-.++..+..
T Consensus 165 ekak~liE~GgDWeRrN---RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 165 EKAKSLIEEGGDWERRN---RLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHhCCChhhhh---hHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 88888888774322112 34555566667778899999999888876643
No 487
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.32 E-value=13 Score=44.54 Aligned_cols=98 Identities=16% Similarity=-0.021 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~----~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
-|-.=++-|.+..+|..|.+.|...++.-..+ ..+|.+.+...+.. ++..|..-..+|++..|.+ ++++++=|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--LKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhhhhhhh
Confidence 45566899999999999999999999876433 44577777777766 8999999999999999877 68999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
+.+++...++.|..+.+..+..+-.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999998766543
No 488
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.28 E-value=43 Score=45.37 Aligned_cols=125 Identities=11% Similarity=0.141 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL---RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~---~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
|...+++.+++|-+.+|++.|...-..-+.-..... .|..-++.. .++.+.+.+..++..+- +..+++..+.|.=
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~Ni-rqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANI-RQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HhhhHHHHHHHHH
Confidence 888999999999999999888765543221111111 122223333 78888888888887653 3346777777766
Q ss_pred HHHcCCHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1828 EFKNGVADRGRSMFEGI------------LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1828 e~~~g~~e~Ar~lfe~a------------L~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
|..+--.+.-.++||.. +-+...+.++.+.|++...+.|++.++..+...
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 65444455666666653 445567889999999999999988877665543
No 489
>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription]
Probab=82.26 E-value=7.2 Score=41.57 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=40.3
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc--c--CC-------CCccCCCCcEEEEEEEEEeC
Q 000176 1367 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--V--ES-------PEKEFPIGKLVAGRVLSVEP 1427 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~--~--~~-------~~~~f~~G~~V~~kVl~vd~ 1427 (1924)
.|++|.|.|+.+++.|+|++.|+ ++.++.---...+| . ++ -.+...+|..|+.+|+.+.-
T Consensus 81 KGEVvdgvV~~Vnk~G~F~~~GP-l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr~ 151 (170)
T KOG3298|consen 81 KGEVVDGVVTKVNKMGVFARSGP-LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTRV 151 (170)
T ss_pred CCcEEEEEEEEEeeeeEEEeccc-eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEEE
Confidence 69999999999999999999996 45554432222221 1 12 11245678888888877653
No 490
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.07 E-value=1.6e+02 Score=37.57 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 000176 1832 GVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.++.+|..++..+|..+.++
T Consensus 219 eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 219 ENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred cCHHHHHHHHHHHhhhcchh
Confidence 35555555555555554443
No 491
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.61 E-value=72 Score=38.32 Aligned_cols=176 Identities=12% Similarity=0.050 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1716 IWVAYFNLENEYGNP--PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1716 lWiayl~le~~~g~~--~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
+-++-..+.+.++.. ...++++-+.++++..+-...|..++. ++.+.--..++++|++.+..
T Consensus 19 le~sq~~FlLt~p~~~~~~~~~~e~l~~~Ird~~Map~Ye~lce----~~~i~~D~~~l~~m~~~nee------------ 82 (393)
T KOG0687|consen 19 LELSQLRFLLTHPEVLGQKAAAREKLLAAIRDEDMAPLYEYLCE----SLVIKLDQDLLNSMKKANEE------------ 82 (393)
T ss_pred hhHHHHHHHHcCccccCcCHHHHHHHHHHHHhcccchHHHHHHh----hcceeccHHHHHHHHHhhHH------------
Confidence 344555555665532 135677777777766554444444433 23333333444444443210
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH-------
Q 000176 1794 LKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE---YPKRTDLWSIYLDQEI------- 1863 (1924)
Q Consensus 1794 ~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~---~Pk~~dlw~~y~~le~------- 1863 (1924)
+.++-.+..+.|-+.+....-.++|.+.|.++.+-||.+.|.+.|.+.... ..-+.|+....+++-+
T Consensus 83 ---ki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~l 159 (393)
T KOG0687|consen 83 ---KIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDL 159 (393)
T ss_pred ---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHH
Confidence 344444455555555555555688999999999999999998888777653 3445666554444433
Q ss_pred HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 000176 1864 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY-EKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~-E~~~G~~~~~~~v~~rA 1915 (1924)
-...++.|..++|+.-. +..++- ++.|-.+ -....++++|..+|-.+
T Consensus 160 V~~~iekak~liE~GgD--WeRrNR---lKvY~Gly~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 160 VTESIEKAKSLIEEGGD--WERRNR---LKVYQGLYCMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHHHHHHHHHHhCCC--hhhhhh---HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33456677777777554 554433 4444433 23335566666655444
No 492
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.45 E-value=2.2e+02 Score=38.90 Aligned_cols=237 Identities=14% Similarity=0.015 Sum_probs=133.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcc---hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE---ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1749 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~e---e~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1749 (1924)
++.+-+.|+=....+..+++|..+..++....+... ...-+--|.++-..-..+.. +.+.|.++.++|+..-|..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~-~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG-DPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccccc
Confidence 444555555555677888888888888877666421 11112346666555443322 5699999999999988764
Q ss_pred -----HHHHHHHHHHHHhCChHHHHHHHHHHHHh---c-CCCHHHHHHHHH--HHHhc-C--HHHHHHHH----HHHHHh
Q 000176 1750 -----KVHLALLGLYERTEQNKLADELLYKMIKK---F-KHSCKVWLRRVQ--RLLKQ-Q--QEGVQAVV----QRALLS 1811 (1924)
Q Consensus 1750 -----~i~~~l~~i~~~~gk~e~A~~~fe~~lk~---~-~~~~~vw~~~a~--~l~~~-~--~~~A~~l~----~ral~~ 1811 (1924)
-.+...+.+..-.|++.+|+.+...+.+. + .....+|..+.+ ++..+ + +......| ++-+..
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 45556666777789999999988877654 2 234566776633 33333 1 22222222 122222
Q ss_pred CCCCCh-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000176 1812 LPRHKH-IKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWS---IYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1812 ~p~~~~-~~~~~~~A~le~-~~g~~e~Ar~lfe~aL~~~Pk~~dlw~---~y~~le~k~gd~~~ar~lferal~~~~~pk 1886 (1924)
.|.+.. +.++...+..++ -.+...+|+.-++-.....|...+.|. .++.+++..|+.++|.....+....-..+.
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 222210 112222222222 234455666666666555666666554 467778889999999988887776322222
Q ss_pred hHHHHHHHHHH-----HHHHcCCHHHHHHHH
Q 000176 1887 KMKFLFKKYLE-----YEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1887 ~~k~lw~~yl~-----~E~~~G~~~~~~~v~ 1912 (1924)
...+|...+. +=...||.+.+..-.
T Consensus 653 -~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l 682 (894)
T COG2909 653 -YHVDYLAAAYKVKLILWLAQGDKELAAEWL 682 (894)
T ss_pred -CCchHHHHHHHhhHHHhcccCCHHHHHHHH
Confidence 1134444332 223357766554433
No 493
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=81.17 E-value=9 Score=45.57 Aligned_cols=81 Identities=16% Similarity=0.071 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchhHHHHHHH
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS---LSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~---~~~~pk~~k~lw~~ 1894 (1924)
+.++.+++..+...|+++.+.+.+++++...|.+..+|...+..+.+.|+...|+..|+++-. ..+.......+|+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 577888888888999999999999999999999999999999999999999999999988655 23444445567888
Q ss_pred HHHH
Q 000176 1895 YLEY 1898 (1924)
Q Consensus 1895 yl~~ 1898 (1924)
|.+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 8766
No 494
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=81.17 E-value=4.9 Score=39.55 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=47.1
Q ss_pred CCCcEEEEEEEEEeeeEEEEEecCCcceEEEEeeecCCCCCCCcccccCCCeEEEEEeccC
Q 000176 969 GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP 1029 (1924)
Q Consensus 969 ~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~~~V~~~~ 1029 (1924)
..|-.|.|.|.+|-++-++++| |+++-++|+....+ .+.|..|..|..++...+
T Consensus 22 ~~gk~V~G~I~hvv~ddLYIDf--G~KFhcVc~rp~~~-----~~~y~~G~rV~lrLkdlE 75 (104)
T PF10246_consen 22 PEGKIVIGKIFHVVDDDLYIDF--GGKFHCVCKRPAVN-----GEKYVRGSRVRLRLKDLE 75 (104)
T ss_pred ccCCEEEEEEEEEecCceEEEe--CCceeEEEeccccc-----ccccccCCEEEEEECCHh
Confidence 3688999999999999999999 99999999876554 467999999999988764
No 495
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.15 E-value=2.8 Score=50.03 Aligned_cols=125 Identities=13% Similarity=0.086 Sum_probs=90.9
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH
Q 000176 1647 AAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1726 (1924)
Q Consensus 1647 ~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~ 1726 (1924)
+.-+++-++...++++.|.+++..+|.+..++-.-+..++.+.....|..-+.+|+...+.+. +-.-|-.|.+ ..
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa---~~ykfrg~A~--rl 194 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA---KGYKFRGYAE--RL 194 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc---cccchhhHHH--HH
Confidence 344456567799999999999999999999999999999999999999999999996544322 2345766665 45
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1778 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~ 1778 (1924)
++++ +.|...|..||+..-...+-..+-.+.-+.++.++-+..|++....
T Consensus 195 lg~~--e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 195 LGNW--EEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred hhch--HHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 5655 8889999999987654433333334555556666666666666543
No 496
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.02 E-value=1.2 Score=52.93 Aligned_cols=140 Identities=13% Similarity=-0.009 Sum_probs=102.5
Q ss_pred HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1761 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRS 1839 (1924)
Q Consensus 1761 ~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~ 1839 (1924)
..|.++.|.+.|.+++...+.+..+|...+..+++. +...|..-|..|+.++|+...-.-|..||. ..+|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~--rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE--RLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH--HHhhchHHHHH
Confidence 356799999999999999999999999999999999 999999999999999998754344555554 45799999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000176 1840 MFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1840 lfe~aL~~~-Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~ 1906 (1924)
.|+.+.+.. -.....|..-. .-..+..+.-|..++|+.....-+.+. =-.+|..+++..-+.+
T Consensus 204 dl~~a~kld~dE~~~a~lKeV--~p~a~ki~e~~~k~er~~~e~~~~~r~--er~r~~r~~~e~~~~e 267 (377)
T KOG1308|consen 204 DLALACKLDYDEANSATLKEV--FPNAGKIEEHRRKYERAREEREIKERV--ERVRYAREPEEMANPE 267 (377)
T ss_pred HHHHHHhccccHHHHHHHHHh--ccchhhhhhchhHHHHHHHHhcccccc--cccccccchhhhcChh
Confidence 999999874 34556777643 334566677788888887732221222 1334445544444443
No 497
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=80.87 E-value=1.2e+02 Score=35.88 Aligned_cols=250 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchh
Q 000176 1632 HAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN 1711 (1924)
Q Consensus 1632 ~~k~~~k~~~e~~~~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ 1711 (1924)
+++++.=++..+.+++.|+.. ..-.-+.+|.+.+.||.|.++.+.+.+...|.+...-. ..
T Consensus 89 kkneeki~Elde~i~~~eedn-----------------gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~s--tg 149 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDN-----------------GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS--TG 149 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcc-----------------cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--cc
Q ss_pred hHHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc-----
Q 000176 1712 EKLNIWVAYFNLENEYGNPP-------EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF----- 1779 (1924)
Q Consensus 1712 ekl~lWiayl~le~~~g~~~-------~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~----- 1779 (1924)
-+..+.+.-+.+..-++ + .|.+..++++.......+..-.-++-....-.++.+|..++-..+..|
T Consensus 150 ~KiDv~l~kiRlg~~y~--d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El 227 (412)
T COG5187 150 LKIDVFLCKIRLGLIYG--DRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSEL 227 (412)
T ss_pred cchhhHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccccc
Q ss_pred -CCCHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000176 1780 -KHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1780 -~~~~~vw~~~a~~l~~~---~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw 1855 (1924)
+.+.-+-+....-+++. +...-.---...|...|....+..+.+++.-++...--.--+.+++--......+ ...
T Consensus 228 ~sY~~~vrYa~~~Gl~~leR~diktki~dspevl~vi~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d-~fl 306 (412)
T COG5187 228 ISYSRAVRYAIFCGLLRLERRDIKTKILDSPEVLDVIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDD-VFL 306 (412)
T ss_pred ccHHHHHHHHHHhhhheeehhhhhhhhcCCHHHHHhccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccch-HHH
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHHcCCH
Q 000176 1856 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY-EKSVGEE 1905 (1924)
Q Consensus 1856 ~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~-E~~~G~~ 1905 (1924)
...++++.+.-...---+++|..-. +.-+.|..-|-.-++| ++..|.+
T Consensus 307 ~rh~d~fvREMRrrvYaQlLESYr~--lsl~sMA~tFgVSV~yvdrDLg~F 355 (412)
T COG5187 307 GRHVDLFVREMRRRVYAQLLESYRL--LSLESMAQTFGVSVEYVDRDLGEF 355 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHhCccHHHHhhhHHhh
No 498
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=80.64 E-value=6.6 Score=36.13 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=47.0
Q ss_pred EEEEEEEEeecceEEE-EEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeE
Q 000176 1460 IVIGQIKRVESYGLFI-TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1524 (1924)
Q Consensus 1460 ~v~G~V~~v~~~GvFV-~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ 1524 (1924)
.+.|.|+...+.|.|- .|++ |..-+||+|---. .-.-...+||.|.+.+-..|.+++||.
T Consensus 6 e~~G~V~e~L~~~~f~V~l~n-g~~vla~i~GKmr----~~rI~I~~GD~V~Ve~spyd~tkgrIi 66 (68)
T TIGR00008 6 EMEGKVTESLPNAMFRVELEN-GHEVLAHISGKIR----MHYIRILPGDKVKVELSPYDLTRGRIT 66 (68)
T ss_pred EEEEEEEEECCCCEEEEEECC-CCEEEEEecCcch----hccEEECCCCEEEEEECcccCCcEeEE
Confidence 3789999999988885 7776 8899999975222 112246799999999999999999985
No 499
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.11 E-value=1.4e+02 Score=37.80 Aligned_cols=137 Identities=16% Similarity=0.066 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHhcCCCHHHH----HHHHHHHHHhCChHHHHHHHHHHHHhc--C-----CCHHHHHHHHHHHHhc-CH
Q 000176 1731 PEEAVVKVFQRALQYCDPKKVH----LALLGLYERTEQNKLADELLYKMIKKF--K-----HSCKVWLRRVQRLLKQ-QQ 1798 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~~~i~----~~l~~i~~~~gk~e~A~~~fe~~lk~~--~-----~~~~vw~~~a~~l~~~-~~ 1798 (1924)
..+.|+.-|..|++......+| ..++..|.+.++.+...++.+..--.+ + -...+++.|+-|.+.+ ++
T Consensus 382 ~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~l 461 (629)
T KOG2300|consen 382 CYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDL 461 (629)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccH
Confidence 4588999999999988776554 346668888887666666655543221 1 1256788999999999 99
Q ss_pred HHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHH--HHHHHHHHcCC
Q 000176 1799 EGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWS--IYLDQEIRLGD 1867 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~----~dlw~--~y~~le~k~gd 1867 (1924)
.+|+..+.+.|+......- .--...++.+....|+--+++.+..-+++...|- ..+|. .|-+++...|+
T Consensus 462 nEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 462 NEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 9999999999987632211 1234445556668899999999999998765443 34684 46677777776
No 500
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=79.89 E-value=2.9 Score=33.24 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1821 ISQTAILEFKNGVADRGRSMFEGIL 1845 (1924)
Q Consensus 1821 ~~~~A~le~~~g~~e~Ar~lfe~aL 1845 (1924)
|..+|.++.+.|++++|.++|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666644
Done!