Query 000176
Match_columns 1924
No_of_seqs 684 out of 4550
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 22:38:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 100.0 3.3E-28 1.1E-32 283.9 27.2 210 1259-1532 6-219 (285)
2 3go5_A Multidomain protein wit 99.9 1.5E-25 5.1E-30 261.5 29.6 225 584-849 5-235 (285)
3 4e6h_A MRNA 3'-END-processing 99.9 1.1E-21 3.8E-26 258.9 26.2 238 1675-1920 302-572 (679)
4 2ond_A Cleavage stimulation fa 99.9 3.9E-21 1.3E-25 232.8 28.5 242 1672-1920 5-272 (308)
5 2uy1_A Cleavage stimulation fa 99.9 5.1E-20 1.7E-24 236.9 29.6 252 1657-1920 64-415 (493)
6 4e6h_A MRNA 3'-END-processing 99.8 3.4E-19 1.2E-23 235.2 33.0 254 1657-1919 48-408 (679)
7 2ooe_A Cleavage stimulation fa 99.8 7.2E-19 2.4E-23 229.7 30.6 238 1675-1921 230-495 (530)
8 2ond_A Cleavage stimulation fa 99.8 1.1E-18 3.7E-23 211.3 25.3 219 1658-1886 33-273 (308)
9 2ooe_A Cleavage stimulation fa 99.8 3.7E-18 1.3E-22 222.9 29.9 251 1654-1917 25-384 (530)
10 2uy1_A Cleavage stimulation fa 99.8 1.8E-18 6.2E-23 222.5 24.2 251 1655-1915 28-380 (493)
11 1w3b_A UDP-N-acetylglucosamine 99.8 1.4E-16 4.7E-21 198.7 31.8 252 1654-1917 114-367 (388)
12 1w3b_A UDP-N-acetylglucosamine 99.8 2.6E-16 9.1E-21 196.2 33.5 249 1657-1917 83-333 (388)
13 3hym_B Cell division cycle pro 99.7 2.2E-16 7.6E-21 190.8 28.4 252 1654-1917 35-298 (330)
14 4eqf_A PEX5-related protein; a 99.7 5.4E-17 1.8E-21 200.5 22.9 259 1654-1923 78-361 (365)
15 1fch_A Peroxisomal targeting s 99.7 2.6E-16 8.8E-21 194.0 26.7 257 1654-1923 77-364 (368)
16 3cv0_A Peroxisome targeting si 99.7 5E-16 1.7E-20 187.4 27.4 258 1654-1923 34-320 (327)
17 3ieg_A DNAJ homolog subfamily 99.7 6.1E-15 2.1E-19 180.0 36.7 249 1657-1917 19-334 (359)
18 4eqf_A PEX5-related protein; a 99.7 2.8E-16 9.4E-21 194.1 23.6 237 1674-1920 64-312 (365)
19 2xpi_A Anaphase-promoting comp 99.7 1.3E-15 4.5E-20 201.1 31.3 253 1654-1918 318-579 (597)
20 3ieg_A DNAJ homolog subfamily 99.7 3E-15 1E-19 182.8 31.6 242 1654-1900 50-351 (359)
21 2y4t_A DNAJ homolog subfamily 99.7 2.4E-15 8.1E-20 191.0 31.7 256 1654-1918 73-358 (450)
22 2y4t_A DNAJ homolog subfamily 99.7 4.7E-15 1.6E-19 188.2 33.1 254 1654-1918 39-324 (450)
23 3hym_B Cell division cycle pro 99.7 2.8E-15 9.7E-20 181.1 27.8 243 1655-1907 70-323 (330)
24 2xpi_A Anaphase-promoting comp 99.7 5.8E-15 2E-19 194.9 33.1 252 1657-1918 288-545 (597)
25 1fch_A Peroxisomal targeting s 99.7 2.6E-15 8.8E-20 185.0 24.9 254 1656-1920 40-316 (368)
26 2pl2_A Hypothetical conserved 99.7 2.9E-15 9.9E-20 171.4 22.6 199 1672-1880 2-213 (217)
27 3fp2_A TPR repeat-containing p 99.6 8.4E-14 2.9E-18 180.9 35.8 254 1654-1920 38-409 (537)
28 1kl9_A Eukaryotic translation 99.6 6.3E-18 2.2E-22 183.6 -5.3 123 1365-1494 13-138 (182)
29 2h6f_A Protein farnesyltransfe 99.6 3.3E-14 1.1E-18 176.6 26.7 232 1654-1898 110-362 (382)
30 3cv0_A Peroxisome targeting si 99.6 6.4E-14 2.2E-18 168.9 27.7 235 1674-1920 20-271 (327)
31 2h6f_A Protein farnesyltransfe 99.6 1.6E-14 5.5E-19 179.5 22.4 237 1667-1915 89-344 (382)
32 3u4t_A TPR repeat-containing p 99.6 5.1E-14 1.7E-18 165.6 24.7 236 1674-1918 2-250 (272)
33 2q7f_A YRRB protein; TPR, prot 99.6 3.6E-14 1.2E-18 163.5 22.0 215 1674-1900 22-238 (243)
34 2gw1_A Mitochondrial precursor 99.6 3.7E-14 1.3E-18 182.8 24.2 251 1655-1918 203-478 (514)
35 3fp2_A TPR repeat-containing p 99.6 4.8E-14 1.6E-18 183.2 24.6 249 1657-1918 218-491 (537)
36 3uq3_A Heat shock protein STI1 99.6 1.7E-13 6E-18 158.9 26.7 214 1655-1880 19-235 (258)
37 3uq3_A Heat shock protein STI1 99.6 2.5E-13 8.7E-18 157.5 27.8 227 1674-1919 4-237 (258)
38 3u4t_A TPR repeat-containing p 99.6 6E-14 2E-18 165.0 22.5 237 1654-1899 16-265 (272)
39 2gw1_A Mitochondrial precursor 99.6 8.5E-14 2.9E-18 179.5 25.7 259 1654-1920 52-403 (514)
40 2ho1_A Type 4 fimbrial biogene 99.6 1.5E-13 5.2E-18 159.6 24.7 207 1671-1888 32-243 (252)
41 2vq2_A PILW, putative fimbrial 99.6 5.5E-13 1.9E-17 151.2 26.6 208 1670-1888 3-216 (225)
42 2pl2_A Hypothetical conserved 99.5 4.5E-13 1.5E-17 153.1 24.3 194 1715-1916 6-212 (217)
43 2q7f_A YRRB protein; TPR, prot 99.5 3.8E-13 1.3E-17 154.9 23.5 204 1654-1866 36-241 (243)
44 3mkr_A Coatomer subunit epsilo 99.5 5.1E-13 1.7E-17 160.1 24.2 245 1655-1917 13-263 (291)
45 2ho1_A Type 4 fimbrial biogene 99.5 1.6E-12 5.3E-17 151.1 27.3 198 1714-1918 37-238 (252)
46 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-12 4.3E-17 144.5 25.1 169 1714-1888 5-175 (184)
47 3sf4_A G-protein-signaling mod 99.5 9.1E-13 3.1E-17 164.0 23.8 265 1654-1921 22-339 (406)
48 4abn_A Tetratricopeptide repea 99.5 6.4E-13 2.2E-17 170.7 22.7 209 1660-1877 87-317 (474)
49 4a1s_A PINS, partner of inscut 99.5 1.4E-12 4.9E-17 163.3 25.0 265 1654-1921 61-375 (411)
50 3vtx_A MAMA; tetratricopeptide 99.5 3.9E-12 1.3E-16 140.5 24.7 165 1749-1918 5-170 (184)
51 3ro2_A PINS homolog, G-protein 99.5 1.4E-12 4.9E-17 156.8 22.6 265 1654-1921 18-335 (338)
52 1ouv_A Conserved hypothetical 99.5 2.8E-11 9.7E-16 142.8 32.4 225 1671-1918 2-251 (273)
53 2vq2_A PILW, putative fimbrial 99.4 1.4E-11 4.9E-16 139.4 27.4 199 1714-1918 8-211 (225)
54 1xnf_A Lipoprotein NLPI; TPR, 99.4 2E-12 7E-17 151.8 20.7 217 1658-1887 22-248 (275)
55 4g1t_A Interferon-induced prot 99.4 2.2E-12 7.4E-17 165.0 21.0 255 1657-1919 154-460 (472)
56 1kl9_A Eukaryotic translation 99.4 4.7E-15 1.6E-19 161.1 -3.6 118 760-908 14-134 (182)
57 2khj_A 30S ribosomal protein S 99.4 2.5E-13 8.7E-18 136.5 9.2 93 1433-1530 11-103 (109)
58 4g1t_A Interferon-induced prot 99.4 1.3E-11 4.6E-16 157.6 27.4 263 1654-1918 64-401 (472)
59 1luz_A Protein K3, protein K2; 99.4 3.1E-13 1E-17 129.4 8.0 78 1451-1530 5-84 (88)
60 3nf1_A KLC 1, kinesin light ch 99.4 3.8E-12 1.3E-16 152.1 19.4 245 1670-1919 22-308 (311)
61 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.8E-11 6.2E-16 143.6 24.7 222 1687-1918 17-244 (275)
62 3mkr_A Coatomer subunit epsilo 99.4 4.1E-11 1.4E-15 143.5 27.8 216 1655-1888 48-269 (291)
63 2khi_A 30S ribosomal protein S 99.4 8.6E-13 2.9E-17 133.8 10.8 93 1433-1530 10-103 (115)
64 2k52_A Uncharacterized protein 99.4 1.6E-12 5.5E-17 122.8 11.3 72 1454-1530 2-73 (80)
65 2a19_A EIF-2- alpha, eukaryoti 99.4 5.5E-14 1.9E-18 152.1 1.1 104 1366-1473 14-120 (175)
66 4i17_A Hypothetical protein; T 99.4 3.3E-11 1.1E-15 138.1 24.3 212 1671-1898 3-223 (228)
67 4abn_A Tetratricopeptide repea 99.4 8E-12 2.7E-16 160.5 21.0 211 1690-1913 83-316 (474)
68 4a1s_A PINS, partner of inscut 99.4 8.6E-12 2.9E-16 156.2 20.7 244 1673-1921 46-335 (411)
69 4gyw_A UDP-N-acetylglucosamine 99.4 1.3E-11 4.3E-16 165.1 23.3 163 1714-1880 9-173 (723)
70 1ouv_A Conserved hypothetical 99.4 1.3E-10 4.4E-15 137.1 29.0 212 1655-1888 20-256 (273)
71 2a19_A EIF-2- alpha, eukaryoti 99.4 1.1E-13 3.7E-18 149.8 1.5 103 761-890 15-120 (175)
72 3sf4_A G-protein-signaling mod 99.3 3.4E-11 1.2E-15 149.7 24.3 245 1672-1921 6-299 (406)
73 2k4k_A GSP13, general stress p 99.3 2.3E-12 8E-17 133.3 11.2 77 1453-1530 3-79 (130)
74 2khi_A 30S ribosomal protein S 99.3 4.1E-12 1.4E-16 128.8 12.4 95 738-835 10-105 (115)
75 1q8k_A Eukaryotic translation 99.3 8.2E-14 2.8E-18 163.2 -0.2 108 1365-1476 11-121 (308)
76 3ro2_A PINS homolog, G-protein 99.3 2.5E-11 8.6E-16 145.9 21.3 242 1675-1921 5-295 (338)
77 1wi5_A RRP5 protein homolog; S 99.3 2E-12 6.7E-17 132.2 9.5 110 214-323 3-117 (119)
78 4gyw_A UDP-N-acetylglucosamine 99.3 2.8E-11 9.5E-16 161.9 22.4 167 1750-1921 10-177 (723)
79 4i17_A Hypothetical protein; T 99.3 6.5E-11 2.2E-15 135.6 21.0 192 1715-1918 8-209 (228)
80 2khj_A 30S ribosomal protein S 99.3 4E-12 1.4E-16 127.7 9.3 94 738-834 11-104 (109)
81 3as5_A MAMA; tetratricopeptide 99.3 1.1E-10 3.6E-15 127.6 21.3 163 1714-1880 8-172 (186)
82 2cqo_A Nucleolar protein of 40 99.3 3.9E-12 1.3E-16 129.2 8.5 80 1452-1531 17-98 (119)
83 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.3E-15 126.2 22.1 166 1750-1920 9-175 (186)
84 3ulq_A Response regulator aspa 99.3 2.3E-10 7.9E-15 142.3 25.7 254 1662-1922 85-372 (383)
85 2eqs_A ATP-dependent RNA helic 99.3 8.8E-12 3E-16 123.6 10.1 78 1451-1530 6-86 (103)
86 3qky_A Outer membrane assembly 99.3 1.2E-10 4E-15 136.7 20.6 179 1669-1851 9-228 (261)
87 1luz_A Protein K3, protein K2; 99.2 1.2E-11 4.1E-16 118.4 7.6 78 755-834 5-85 (88)
88 2k4k_A GSP13, general stress p 99.2 2.2E-11 7.4E-16 126.0 9.9 82 1363-1444 3-84 (130)
89 2pzi_A Probable serine/threoni 99.2 1.1E-10 3.9E-15 156.6 19.1 185 1670-1867 389-583 (681)
90 3edt_B KLC 2, kinesin light ch 99.2 1.9E-10 6.5E-15 134.8 18.7 221 1656-1880 16-280 (283)
91 2pzi_A Probable serine/threoni 99.2 1.4E-10 4.7E-15 155.8 19.4 167 1725-1899 402-578 (681)
92 3aev_A Translation initiation 99.2 1.5E-12 5.1E-17 150.8 -0.1 108 1365-1476 9-119 (275)
93 2k52_A Uncharacterized protein 99.2 5.9E-11 2E-15 112.0 10.9 73 758-834 2-74 (80)
94 3nf1_A KLC 1, kinesin light ch 99.2 4.8E-11 1.6E-15 142.4 12.9 223 1654-1880 40-306 (311)
95 3dra_A Protein farnesyltransfe 99.2 3E-09 1E-13 127.1 28.2 228 1657-1895 49-299 (306)
96 1q8k_A Eukaryotic translation 99.2 2.5E-12 8.7E-17 150.6 1.4 107 759-892 11-120 (308)
97 4ga2_A E3 SUMO-protein ligase 99.2 4.6E-11 1.6E-15 127.9 9.8 133 1732-1866 13-148 (150)
98 1hz4_A MALT regulatory protein 99.2 5.8E-09 2E-13 128.8 30.0 267 1653-1921 26-325 (373)
99 2cqo_A Nucleolar protein of 40 99.2 3.1E-11 1E-15 122.6 7.5 85 1362-1446 17-104 (119)
100 2eqs_A ATP-dependent RNA helic 99.2 7.9E-11 2.7E-15 116.7 9.7 82 1363-1446 8-93 (103)
101 3q15_A PSP28, response regulat 99.1 3E-09 1E-13 132.0 26.5 239 1676-1922 102-369 (378)
102 3urz_A Uncharacterized protein 99.1 5.7E-10 1.9E-14 126.4 17.2 184 1674-1886 3-189 (208)
103 1wi5_A RRP5 protein homolog; S 99.1 6.1E-11 2.1E-15 121.1 7.8 96 1434-1534 3-99 (119)
104 3qky_A Outer membrane assembly 99.1 2.7E-09 9.3E-14 124.9 23.0 169 1715-1887 16-228 (261)
105 4ga2_A E3 SUMO-protein ligase 99.1 3.3E-10 1.1E-14 121.3 13.7 145 1755-1904 3-149 (150)
106 2xm6_A Protein corresponding t 99.1 2.2E-08 7.5E-13 129.0 33.4 240 1655-1919 165-433 (490)
107 3qou_A Protein YBBN; thioredox 99.1 1.3E-09 4.3E-14 130.2 20.2 180 1732-1919 102-285 (287)
108 1qqe_A Vesicular transport pro 99.1 1.4E-09 4.7E-14 130.2 20.4 203 1682-1888 44-274 (292)
109 1qqe_A Vesicular transport pro 99.1 1.6E-09 5.4E-14 129.7 20.7 203 1690-1915 32-266 (292)
110 1hz4_A MALT regulatory protein 99.1 1.5E-08 5.2E-13 125.1 30.0 241 1676-1920 15-284 (373)
111 3ulq_A Response regulator aspa 99.1 5.3E-10 1.8E-14 139.0 16.3 224 1654-1880 116-367 (383)
112 3aev_A Translation initiation 99.1 1.9E-10 6.4E-15 133.3 11.0 75 1456-1530 10-85 (275)
113 3edt_B KLC 2, kinesin light ch 99.1 2.3E-09 7.7E-14 125.6 20.4 227 1687-1918 13-281 (283)
114 2yhc_A BAMD, UPF0169 lipoprote 99.1 4.4E-09 1.5E-13 120.5 21.9 167 1716-1886 6-216 (225)
115 2xm6_A Protein corresponding t 99.1 4.8E-08 1.7E-12 125.7 34.1 237 1656-1917 94-359 (490)
116 2yhc_A BAMD, UPF0169 lipoprote 99.1 4.6E-09 1.6E-13 120.4 21.2 174 1675-1852 4-218 (225)
117 2fo7_A Synthetic consensus TPR 99.1 4.1E-09 1.4E-13 107.9 18.8 129 1750-1880 2-131 (136)
118 2r5s_A Uncharacterized protein 99.1 6.7E-10 2.3E-14 122.0 13.4 162 1751-1918 8-173 (176)
119 3qou_A Protein YBBN; thioredox 99.1 4.5E-09 1.5E-13 125.4 21.0 169 1671-1846 113-283 (287)
120 3urz_A Uncharacterized protein 99.0 3E-09 1E-13 120.4 18.4 163 1750-1918 5-186 (208)
121 2r5s_A Uncharacterized protein 99.0 1.4E-09 4.9E-14 119.3 15.1 160 1716-1880 8-172 (176)
122 4gco_A Protein STI-1; structur 99.0 3.8E-09 1.3E-13 109.4 15.9 118 1742-1861 5-124 (126)
123 3dss_A Geranylgeranyl transfer 99.0 1.3E-07 4.4E-12 113.7 31.4 232 1657-1901 46-318 (331)
124 2vsy_A XCC0866; transferase, g 99.0 3.6E-09 1.2E-13 139.1 18.8 152 1732-1887 5-161 (568)
125 3dra_A Protein farnesyltransfe 99.0 3.7E-08 1.3E-12 117.7 25.6 228 1681-1917 38-286 (306)
126 3q15_A PSP28, response regulat 99.0 5.8E-09 2E-13 129.5 18.8 224 1654-1880 114-364 (378)
127 2vsy_A XCC0866; transferase, g 99.0 6.9E-09 2.4E-13 136.4 19.5 152 1762-1918 2-157 (568)
128 3cw2_C Translation initiation 99.0 3.5E-10 1.2E-14 131.0 6.1 78 1453-1530 7-85 (266)
129 3psi_A Transcription elongatio 98.9 8.6E-10 3E-14 149.7 8.6 81 1451-1532 896-977 (1219)
130 3gyz_A Chaperone protein IPGC; 98.9 2.1E-09 7.1E-14 115.2 9.9 107 1772-1880 25-132 (151)
131 1e3p_A Guanosine pentaphosphat 98.9 3.8E-11 1.3E-15 156.7 -4.8 128 1366-1531 608-743 (757)
132 1a17_A Serine/threonine protei 98.9 2.9E-08 9.8E-13 106.5 18.6 129 1750-1880 14-145 (166)
133 1p5q_A FKBP52, FK506-binding p 98.9 4.7E-09 1.6E-13 128.3 13.6 144 1735-1880 132-293 (336)
134 4h7y_A Dual specificity protei 98.9 9.5E-09 3.3E-13 105.1 13.0 106 1780-1888 10-128 (161)
135 2fo7_A Synthetic consensus TPR 98.9 6.1E-08 2.1E-12 99.1 19.2 132 1716-1851 3-136 (136)
136 3q7a_A Farnesyltransferase alp 98.9 1.2E-07 4E-12 114.5 24.1 229 1657-1896 70-344 (349)
137 2ifu_A Gamma-SNAP; membrane fu 98.9 4.2E-08 1.4E-12 118.1 19.9 185 1721-1910 43-253 (307)
138 3cdi_A Polynucleotide phosphor 98.9 2.3E-10 8E-15 148.9 0.0 116 1375-1530 582-698 (723)
139 3gyz_A Chaperone protein IPGC; 98.9 1.1E-08 3.7E-13 109.5 12.8 113 1738-1852 24-138 (151)
140 3bzc_A TEX; helix-turn-helix, 98.9 8.9E-10 3.1E-14 144.1 5.0 79 1451-1530 648-726 (785)
141 4h7y_A Dual specificity protei 98.8 3.4E-08 1.1E-12 101.1 14.9 114 1669-1815 7-127 (161)
142 2vgx_A Chaperone SYCD; alterna 98.8 3.3E-08 1.1E-12 105.4 15.2 116 1737-1854 8-125 (148)
143 3cw2_C Translation initiation 98.8 2.9E-10 1E-14 131.6 -1.0 78 758-835 8-87 (266)
144 1go3_E DNA-directed RNA polyme 98.8 6.8E-09 2.3E-13 115.0 10.0 77 1454-1532 78-170 (187)
145 2xcb_A PCRH, regulatory protei 98.8 1.5E-08 5.2E-13 106.9 12.1 118 1737-1856 5-124 (142)
146 2e2e_A Formate-dependent nitri 98.8 3.2E-08 1.1E-12 108.2 14.9 117 1762-1880 23-143 (177)
147 2vyi_A SGTA protein; chaperone 98.8 8.8E-08 3E-12 97.6 17.2 117 1750-1868 13-130 (131)
148 3psf_A Transcription elongatio 98.8 4.8E-10 1.6E-14 150.1 0.1 81 1451-1532 899-980 (1030)
149 1xi4_A Clathrin heavy chain; a 98.8 5E-07 1.7E-11 122.6 28.3 149 1750-1909 1196-1375(1630)
150 2lni_A Stress-induced-phosphop 98.8 5.4E-08 1.9E-12 99.9 15.2 116 1750-1867 17-133 (133)
151 4gco_A Protein STI-1; structur 98.8 4.1E-08 1.4E-12 101.5 14.1 113 1778-1895 8-121 (126)
152 1p5q_A FKBP52, FK506-binding p 98.8 1.2E-08 4.1E-13 124.7 11.6 155 1763-1920 127-296 (336)
153 2c2l_A CHIP, carboxy terminus 98.8 4.5E-08 1.5E-12 116.3 16.2 191 1672-1880 1-198 (281)
154 4aid_A Polyribonucleotide nucl 98.8 7E-10 2.4E-14 143.4 0.0 77 1452-1530 632-708 (726)
155 1hh8_A P67PHOX, NCF-2, neutrop 98.8 8.9E-08 3.1E-12 107.7 17.2 129 1719-1851 11-154 (213)
156 2ifu_A Gamma-SNAP; membrane fu 98.8 7.2E-08 2.5E-12 116.1 17.0 190 1679-1873 40-253 (307)
157 3psi_A Transcription elongatio 98.8 8.9E-09 3E-13 140.0 9.8 82 1360-1441 895-977 (1219)
158 2nn6_I 3'-5' exoribonuclease C 98.8 1.3E-08 4.4E-13 113.6 9.3 79 1454-1532 78-165 (209)
159 3upv_A Heat shock protein STI1 98.7 1.4E-07 4.9E-12 96.7 16.4 112 1750-1863 5-123 (126)
160 1xi4_A Clathrin heavy chain; a 98.7 7.5E-07 2.6E-11 120.9 27.5 194 1672-1901 1102-1326(1630)
161 1na0_A Designed protein CTPR3; 98.7 2.5E-07 8.4E-12 93.3 17.9 115 1750-1866 10-125 (125)
162 1a17_A Serine/threonine protei 98.7 2.3E-07 7.8E-12 99.4 18.5 135 1782-1921 12-149 (166)
163 1elw_A TPR1-domain of HOP; HOP 98.7 1.8E-07 6.1E-12 93.5 16.5 111 1750-1862 5-116 (118)
164 4f3v_A ESX-1 secretion system 98.7 3.4E-08 1.1E-12 115.5 12.6 207 1653-1864 18-253 (282)
165 4ayb_E DNA-directed RNA polyme 98.7 1.9E-08 6.6E-13 110.6 9.7 77 1454-1532 78-169 (180)
166 2vgx_A Chaperone SYCD; alterna 98.7 2.7E-08 9.3E-13 106.0 10.2 109 1770-1880 8-117 (148)
167 2c2l_A CHIP, carboxy terminus 98.7 4.8E-08 1.6E-12 116.1 13.2 188 1715-1917 5-198 (281)
168 2e2e_A Formate-dependent nitri 98.7 7.7E-08 2.6E-12 105.1 13.8 140 1732-1880 26-170 (177)
169 4f3v_A ESX-1 secretion system 98.7 6.9E-08 2.4E-12 112.9 13.7 199 1687-1897 18-249 (282)
170 3sz7_A HSC70 cochaperone (SGT) 98.7 1.5E-07 5.1E-12 101.6 15.4 108 1750-1859 12-120 (164)
171 3e4b_A ALGK; tetratricopeptide 98.7 4.4E-07 1.5E-11 115.5 22.2 137 1733-1880 196-350 (452)
172 2xcb_A PCRH, regulatory protei 98.7 3.4E-08 1.2E-12 104.2 9.8 114 1770-1887 5-119 (142)
173 3rjv_A Putative SEL1 repeat pr 98.7 4.4E-07 1.5E-11 102.9 19.7 176 1733-1918 3-197 (212)
174 3bzc_A TEX; helix-turn-helix, 98.7 6E-09 2E-13 136.4 4.6 82 1359-1440 646-727 (785)
175 3rjv_A Putative SEL1 repeat pr 98.7 6.9E-07 2.3E-11 101.2 20.9 175 1693-1881 4-197 (212)
176 3dss_A Geranylgeranyl transfer 98.7 4.3E-06 1.5E-10 100.5 28.6 221 1686-1916 40-302 (331)
177 3upv_A Heat shock protein STI1 98.7 2.8E-07 9.6E-12 94.5 15.5 112 1782-1898 3-121 (126)
178 2lni_A Stress-induced-phosphop 98.7 2.6E-07 8.8E-12 94.7 14.8 119 1780-1903 13-132 (133)
179 1hh8_A P67PHOX, NCF-2, neutrop 98.6 5.9E-07 2E-11 100.9 19.1 125 1751-1880 8-149 (213)
180 2bh8_A 1B11; transcription, mo 98.6 4.3E-08 1.5E-12 96.3 8.2 85 1365-1496 11-99 (101)
181 1e3p_A Guanosine pentaphosphat 98.6 7.2E-10 2.5E-14 144.7 -6.0 83 1363-1446 663-749 (757)
182 3e4b_A ALGK; tetratricopeptide 98.6 1.3E-06 4.6E-11 111.0 24.1 169 1733-1917 162-350 (452)
183 2qfc_A PLCR protein; TPR, HTH, 98.6 7.4E-07 2.5E-11 106.2 20.1 164 1715-1880 76-265 (293)
184 2fbn_A 70 kDa peptidylprolyl i 98.6 2.7E-07 9.2E-12 103.0 15.2 127 1750-1878 39-183 (198)
185 1elw_A TPR1-domain of HOP; HOP 98.6 6.2E-07 2.1E-11 89.4 16.4 113 1782-1899 3-116 (118)
186 3m7n_A Putative uncharacterize 98.6 5.7E-08 1.9E-12 106.1 9.2 72 1455-1532 56-136 (179)
187 2qfc_A PLCR protein; TPR, HTH, 98.6 1.2E-06 4.2E-11 104.4 21.7 176 1670-1847 70-266 (293)
188 1y14_B B16, RPB7, DNA-directed 98.6 7.1E-08 2.4E-12 105.0 9.6 76 1454-1532 80-168 (171)
189 3q49_B STIP1 homology and U bo 98.6 3.4E-07 1.2E-11 94.9 14.4 98 1781-1880 7-105 (137)
190 1hxi_A PEX5, peroxisome target 98.6 2E-07 6.8E-12 95.6 12.3 93 1786-1880 20-113 (121)
191 2dba_A Smooth muscle cell asso 98.6 3.5E-07 1.2E-11 95.8 14.2 111 1750-1862 29-143 (148)
192 3q49_B STIP1 homology and U bo 98.6 5.4E-07 1.9E-11 93.4 15.4 115 1749-1865 9-129 (137)
193 2vyi_A SGTA protein; chaperone 98.6 1E-06 3.5E-11 89.5 17.1 119 1781-1904 10-129 (131)
194 2b8k_G B16, DNA-directed RNA p 98.6 6.1E-08 2.1E-12 108.2 8.3 76 1454-1532 80-168 (215)
195 2fbn_A 70 kDa peptidylprolyl i 98.6 8.7E-08 3E-12 107.1 9.7 150 1757-1909 12-176 (198)
196 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 9.8E-08 3.4E-12 121.7 11.3 129 1750-1880 269-414 (457)
197 3psf_A Transcription elongatio 98.6 5.9E-09 2E-13 139.6 -0.1 82 1360-1441 898-980 (1030)
198 3q7a_A Farnesyltransferase alp 98.6 2.6E-06 9E-11 102.8 23.0 221 1687-1916 66-329 (349)
199 1go3_E DNA-directed RNA polyme 98.6 1.2E-07 4E-12 105.1 10.3 80 1364-1444 78-173 (187)
200 1b89_A Protein (clathrin heavy 98.6 4.7E-08 1.6E-12 120.5 7.7 179 1656-1872 18-197 (449)
201 1wao_1 Serine/threonine protei 98.6 8.1E-08 2.8E-12 123.1 9.8 168 1752-1921 9-200 (477)
202 3u64_A Protein TP_0956; tetrat 98.6 1.9E-06 6.4E-11 99.4 19.8 88 1797-1886 178-272 (301)
203 3mv2_B Coatomer subunit epsilo 98.6 1.6E-06 5.4E-11 102.8 19.8 202 1660-1880 85-304 (310)
204 3u3w_A Transcriptional activat 98.6 1.3E-06 4.5E-11 104.0 19.5 126 1755-1880 121-265 (293)
205 2dba_A Smooth muscle cell asso 98.6 6.1E-07 2.1E-11 93.9 14.6 119 1780-1901 25-145 (148)
206 2xev_A YBGF; tetratricopeptide 98.5 1.1E-06 3.9E-11 89.8 16.2 112 1752-1863 5-121 (129)
207 3sz7_A HSC70 cochaperone (SGT) 98.5 6.3E-07 2.2E-11 96.7 14.9 104 1781-1888 9-113 (164)
208 1na0_A Designed protein CTPR3; 98.5 1.7E-06 5.7E-11 87.1 17.1 112 1783-1899 9-121 (125)
209 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 8.3E-08 2.8E-12 122.4 8.9 149 1764-1915 249-412 (457)
210 2c35_B Human RPB7, DNA-directe 98.5 1.3E-07 4.4E-12 103.2 8.9 75 1455-1532 79-168 (172)
211 4gcn_A Protein STI-1; structur 98.5 9.2E-07 3.2E-11 91.4 15.0 106 1750-1856 9-120 (127)
212 1hxi_A PEX5, peroxisome target 98.5 5.4E-07 1.8E-11 92.3 12.9 102 1750-1853 18-120 (121)
213 4aid_A Polyribonucleotide nucl 98.5 1.1E-08 3.8E-13 132.2 0.0 81 1363-1444 633-713 (726)
214 2if4_A ATFKBP42; FKBP-like, al 98.5 1.2E-07 4.2E-12 115.8 8.8 146 1715-1880 180-327 (338)
215 3u3w_A Transcriptional activat 98.5 1.6E-06 5.6E-11 103.2 18.1 167 1680-1848 80-267 (293)
216 1elr_A TPR2A-domain of HOP; HO 98.5 1E-06 3.5E-11 89.7 14.0 113 1750-1863 5-123 (131)
217 3rkv_A Putative peptidylprolyl 98.5 7.4E-07 2.5E-11 95.9 13.4 112 1750-1863 12-143 (162)
218 2z0s_A Probable exosome comple 98.5 1.5E-07 5E-12 107.5 7.9 77 1454-1532 63-143 (235)
219 1ihg_A Cyclophilin 40; ppiase 98.5 8.7E-07 3E-11 109.5 14.9 137 1715-1872 224-361 (370)
220 3cdi_A Polynucleotide phosphor 98.5 2.1E-08 7.1E-13 130.7 0.0 83 1363-1446 623-705 (723)
221 1dce_A Protein (RAB geranylger 98.5 2.2E-06 7.7E-11 111.7 19.1 173 1657-1836 45-244 (567)
222 1b89_A Protein (clathrin heavy 98.4 1.7E-07 5.8E-12 115.6 7.8 230 1655-1912 46-305 (449)
223 4ayb_E DNA-directed RNA polyme 98.4 4.8E-07 1.7E-11 99.4 10.4 79 1364-1443 78-171 (180)
224 2nn6_I 3'-5' exoribonuclease C 98.4 3.4E-07 1.2E-11 102.1 8.9 78 758-835 78-165 (209)
225 1dce_A Protein (RAB geranylger 98.4 3.9E-06 1.3E-10 109.4 19.6 158 1732-1894 45-231 (567)
226 2je6_I RRP4, exosome complex R 98.4 3.1E-07 1.1E-11 105.3 8.0 77 1454-1532 71-150 (251)
227 2kck_A TPR repeat; tetratricop 98.4 9.5E-07 3.2E-11 87.3 10.6 98 1781-1880 4-105 (112)
228 3gw4_A Uncharacterized protein 98.4 4.1E-06 1.4E-10 92.9 16.6 150 1731-1880 7-175 (203)
229 2xev_A YBGF; tetratricopeptide 98.4 5.3E-06 1.8E-10 84.8 16.0 102 1785-1888 4-110 (129)
230 2kck_A TPR repeat; tetratricop 98.4 1.4E-06 4.9E-11 85.9 11.3 102 1750-1851 7-110 (112)
231 3gw4_A Uncharacterized protein 98.4 4.4E-06 1.5E-10 92.6 16.3 162 1760-1921 3-179 (203)
232 3h0g_G DNA-directed RNA polyme 98.4 1.8E-07 6.1E-12 101.7 4.6 76 1454-1532 81-169 (172)
233 3rkv_A Putative peptidylprolyl 98.3 4.5E-06 1.5E-10 89.7 15.3 115 1783-1899 11-142 (162)
234 4gcn_A Protein STI-1; structur 98.3 3.6E-06 1.2E-10 86.9 13.8 97 1782-1880 7-111 (127)
235 2b8k_G B16, DNA-directed RNA p 98.3 7.3E-07 2.5E-11 99.6 8.9 77 1365-1443 81-170 (215)
236 2if4_A ATFKBP42; FKBP-like, al 98.3 8.3E-07 2.8E-11 108.4 10.1 101 1750-1852 231-333 (338)
237 3ro3_A PINS homolog, G-protein 98.3 2.7E-06 9.1E-11 89.8 12.9 131 1750-1880 10-157 (164)
238 1y14_B B16, RPB7, DNA-directed 98.3 8.4E-07 2.9E-11 96.5 9.0 65 1365-1430 81-155 (171)
239 1elr_A TPR2A-domain of HOP; HO 98.3 2.1E-06 7.2E-11 87.3 11.6 111 1782-1898 3-121 (131)
240 2ba0_A Archeal exosome RNA bin 98.3 1.1E-06 3.7E-11 99.6 9.8 76 1455-1532 55-131 (229)
241 3m7n_A Putative uncharacterize 98.3 7.4E-07 2.5E-11 97.3 7.9 71 1365-1441 56-136 (179)
242 2z0s_A Probable exosome comple 98.3 6.5E-07 2.2E-11 102.2 7.7 75 1364-1439 63-141 (235)
243 3k9i_A BH0479 protein; putativ 98.3 1.2E-06 4.2E-11 88.7 7.9 92 1762-1855 3-98 (117)
244 2hr2_A Hypothetical protein; a 98.2 6.3E-06 2.1E-10 87.7 12.7 102 1750-1853 12-137 (159)
245 2c35_B Human RPB7, DNA-directe 98.2 1.7E-06 5.9E-11 94.2 8.6 72 760-833 80-166 (172)
246 1ihg_A Cyclophilin 40; ppiase 98.2 5E-06 1.7E-10 102.7 13.8 139 1749-1909 223-361 (370)
247 4b4t_Q 26S proteasome regulato 98.2 1.7E-05 5.9E-10 99.5 18.5 165 1680-1846 9-203 (434)
248 4g26_A Pentatricopeptide repea 98.2 6.9E-05 2.4E-09 96.1 23.2 177 1717-1898 29-219 (501)
249 1zu2_A Mitochondrial import re 98.2 6.7E-06 2.3E-10 87.3 11.3 94 1761-1856 14-129 (158)
250 3ro3_A PINS homolog, G-protein 98.2 1.3E-05 4.3E-10 84.5 13.2 135 1714-1850 9-161 (164)
251 3mv2_B Coatomer subunit epsilo 98.2 6.6E-05 2.2E-09 88.9 20.4 181 1694-1888 85-287 (310)
252 2je6_I RRP4, exosome complex R 98.1 2.6E-06 9E-11 97.6 8.2 74 1365-1439 72-148 (251)
253 2hr2_A Hypothetical protein; a 98.1 1.1E-05 3.8E-10 85.7 12.2 103 1783-1887 11-135 (159)
254 4b4t_Q 26S proteasome regulato 98.1 6.1E-05 2.1E-09 94.4 20.0 193 1654-1848 17-246 (434)
255 2ba0_A Archeal exosome RNA bin 98.1 6.9E-06 2.4E-10 93.0 9.9 74 1365-1439 55-129 (229)
256 1hh2_P NUSA, N utilization sub 98.1 2.1E-06 7.1E-11 101.7 5.7 105 542-654 86-198 (344)
257 4g26_A Pentatricopeptide repea 98.1 0.00022 7.5E-09 91.5 24.6 180 1677-1862 28-220 (501)
258 1wao_1 Serine/threonine protei 98.0 1.6E-06 5.5E-11 111.0 4.1 125 1722-1850 14-153 (477)
259 3h0g_G DNA-directed RNA polyme 98.0 2.4E-06 8.1E-11 92.8 4.7 72 1365-1438 82-166 (172)
260 2bh8_A 1B11; transcription, mo 98.0 9.8E-06 3.4E-10 79.6 8.0 86 1259-1405 13-99 (101)
261 1hh2_P NUSA, N utilization sub 98.0 1.2E-05 4.3E-10 95.1 10.0 120 715-849 84-210 (344)
262 1zu2_A Mitochondrial import re 98.0 1.8E-05 6.2E-10 84.0 10.1 88 1797-1888 17-125 (158)
263 3k9i_A BH0479 protein; putativ 98.0 8.5E-06 2.9E-10 82.4 7.2 88 1797-1888 5-95 (117)
264 2kat_A Uncharacterized protein 98.0 3.1E-05 1.1E-09 77.7 11.0 79 1800-1880 3-81 (115)
265 2kat_A Uncharacterized protein 97.9 5.5E-05 1.9E-09 75.9 11.9 83 1766-1850 2-85 (115)
266 2id0_A Exoribonuclease 2; RNAs 97.9 1.6E-05 5.4E-10 104.1 9.3 75 1453-1527 554-642 (644)
267 1na3_A Designed protein CTPR2; 97.9 8.1E-05 2.8E-09 70.6 11.8 81 1783-1865 9-90 (91)
268 3ayh_B DNA-directed RNA polyme 97.8 4.3E-05 1.5E-09 85.1 9.2 64 1455-1520 79-161 (203)
269 2l6j_A TPR repeat-containing p 97.8 2E-05 7E-10 77.9 5.9 89 1783-1873 4-99 (111)
270 2l6j_A TPR repeat-containing p 97.7 1.4E-05 4.8E-10 79.1 4.1 95 1750-1844 5-104 (111)
271 1na3_A Designed protein CTPR2; 97.7 0.00027 9.3E-09 66.8 12.3 81 1750-1832 10-91 (91)
272 2ckz_B C25, DNA-directed RNA p 97.6 5.9E-05 2E-09 84.5 7.4 67 1454-1521 78-158 (218)
273 3u64_A Protein TP_0956; tetrat 97.5 0.0016 5.4E-08 75.3 16.7 111 1804-1917 139-268 (301)
274 2vnu_D Exosome complex exonucl 97.5 8.8E-05 3E-09 98.8 7.2 70 1459-1528 671-760 (760)
275 3ma5_A Tetratricopeptide repea 97.5 0.00024 8.3E-09 69.5 8.5 68 1780-1849 4-72 (100)
276 2kc7_A BFR218_protein; tetratr 97.5 0.0002 6.9E-09 69.4 7.9 61 1755-1815 6-68 (99)
277 3ma5_A Tetratricopeptide repea 97.5 0.00039 1.3E-08 68.1 9.8 63 1818-1880 7-69 (100)
278 2nn6_H Exosome complex exonucl 97.5 0.0001 3.6E-09 86.4 6.4 73 1365-1438 93-175 (308)
279 2wp8_J Exosome complex exonucl 97.4 0.0001 3.4E-09 99.9 6.9 71 1458-1528 887-977 (977)
280 2bx2_L Ribonuclease E, RNAse E 97.4 0.00023 7.7E-09 88.9 9.5 75 1453-1528 41-126 (517)
281 2kc7_A BFR218_protein; tetratr 97.4 0.00019 6.5E-09 69.6 6.4 67 1788-1856 5-73 (99)
282 2nn6_H Exosome complex exonucl 97.3 0.00016 5.5E-09 84.8 6.3 77 1454-1532 92-178 (308)
283 3n71_A Histone lysine methyltr 97.3 0.0006 2E-08 86.8 12.0 121 1760-1880 320-463 (490)
284 1klx_A Cysteine rich protein B 97.3 0.0021 7.3E-08 67.0 14.1 105 1733-1846 12-125 (138)
285 2id0_A Exoribonuclease 2; RNAs 97.3 0.0003 1E-08 92.1 9.1 72 1365-1436 556-642 (644)
286 3ayh_B DNA-directed RNA polyme 97.3 0.00035 1.2E-08 77.8 8.3 63 760-823 80-161 (203)
287 1k0r_A NUSA; two component arr 97.3 0.00051 1.7E-08 81.5 9.6 80 760-850 129-215 (366)
288 3n71_A Histone lysine methyltr 97.3 0.00059 2E-08 86.9 11.0 129 1726-1856 321-473 (490)
289 3bee_A Putative YFRE protein; 97.3 0.00084 2.9E-08 65.0 9.5 69 1780-1850 3-75 (93)
290 3esl_A Checkpoint serine/threo 97.2 0.0066 2.3E-07 66.1 16.7 133 1766-1901 9-162 (202)
291 1klx_A Cysteine rich protein B 97.2 0.0033 1.1E-07 65.5 14.2 109 1763-1881 9-126 (138)
292 4a1g_A Mitotic checkpoint seri 97.2 0.0025 8.4E-08 66.6 12.3 128 1766-1901 7-148 (152)
293 2bx2_L Ribonuclease E, RNAse E 97.2 0.00058 2E-08 85.3 8.8 77 1365-1441 43-130 (517)
294 2ckz_B C25, DNA-directed RNA p 97.2 0.00046 1.6E-08 77.3 7.1 65 760-824 80-158 (218)
295 3ly7_A Transcriptional activat 97.2 0.0059 2E-07 73.5 17.1 129 1765-1898 215-354 (372)
296 1k0r_A NUSA; two component arr 97.1 0.00061 2.1E-08 80.8 8.3 70 1452-1527 123-202 (366)
297 3esl_A Checkpoint serine/threo 97.1 0.014 4.8E-07 63.6 17.5 132 1733-1864 9-162 (202)
298 1pc2_A Mitochondria fission pr 97.1 0.0044 1.5E-07 65.0 13.1 89 1766-1855 15-108 (152)
299 2asb_A Transcription elongatio 97.1 0.0011 3.7E-08 74.4 8.9 70 1259-1337 7-83 (251)
300 3ly7_A Transcriptional activat 97.1 0.026 8.8E-07 68.0 21.4 173 1644-1851 165-343 (372)
301 2asb_A Transcription elongatio 97.0 0.0019 6.4E-08 72.5 10.1 78 760-850 6-92 (251)
302 2ja9_A Exosome complex exonucl 97.0 0.0016 5.6E-08 70.1 8.8 76 1455-1532 5-86 (175)
303 1pc2_A Mitochondria fission pr 96.9 0.0061 2.1E-07 64.0 12.5 88 1797-1888 13-105 (152)
304 2ja9_A Exosome complex exonucl 96.9 0.0021 7.3E-08 69.2 9.0 70 1365-1436 5-75 (175)
305 4aez_C MAD3, mitotic spindle c 96.9 0.0082 2.8E-07 66.5 13.7 126 1768-1901 54-197 (223)
306 3bee_A Putative YFRE protein; 96.9 0.0049 1.7E-07 59.6 10.6 63 1818-1880 6-71 (93)
307 4aez_C MAD3, mitotic spindle c 96.8 0.021 7.2E-07 63.3 15.6 127 1733-1864 52-197 (223)
308 4a1g_A Mitotic checkpoint seri 96.7 0.012 4.3E-07 61.4 12.6 112 1798-1917 6-129 (152)
309 2vnu_D Exosome complex exonucl 96.7 0.0013 4.4E-08 87.6 6.6 69 763-831 671-760 (760)
310 2wvi_A Mitotic checkpoint seri 96.7 0.011 3.7E-07 62.7 12.2 123 1772-1902 6-144 (164)
311 2wp8_J Exosome complex exonucl 96.7 0.0014 4.8E-08 88.9 6.6 70 762-831 887-977 (977)
312 2v5f_A Prolyl 4-hydroxylase su 96.5 0.021 7.2E-07 56.1 12.1 77 1783-1859 5-87 (104)
313 2wvi_A Mitotic checkpoint seri 96.2 0.022 7.5E-07 60.3 10.8 108 1803-1917 4-124 (164)
314 3qww_A SET and MYND domain-con 96.0 0.021 7.1E-07 71.5 11.8 84 1797-1880 313-410 (433)
315 2v5f_A Prolyl 4-hydroxylase su 95.8 0.037 1.3E-06 54.4 10.3 69 1818-1888 5-80 (104)
316 3qww_A SET and MYND domain-con 95.8 0.041 1.4E-06 68.8 12.8 94 1830-1924 310-417 (433)
317 1nzn_A CGI-135 protein, fissio 95.3 0.09 3.1E-06 53.1 10.7 90 1765-1855 17-111 (126)
318 3qwp_A SET and MYND domain-con 95.1 0.16 5.4E-06 63.5 15.0 87 1794-1880 298-399 (429)
319 3qwp_A SET and MYND domain-con 95.0 0.062 2.1E-06 67.2 10.8 89 1756-1845 294-398 (429)
320 2nn6_G Exosome complex exonucl 94.7 0.05 1.7E-06 63.1 8.0 70 1455-1527 125-194 (289)
321 3txn_A 26S proteasome regulato 94.5 1.7 5.9E-05 53.0 21.3 171 1679-1850 23-213 (394)
322 3txn_A 26S proteasome regulato 94.4 0.85 2.9E-05 55.7 18.3 165 1752-1916 22-208 (394)
323 2nn6_G Exosome complex exonucl 94.2 0.071 2.4E-06 61.9 7.7 71 1365-1437 125-195 (289)
324 1nzn_A CGI-135 protein, fissio 93.4 0.58 2E-05 47.3 11.6 87 1797-1887 16-107 (126)
325 3mkq_A Coatomer beta'-subunit; 92.6 2.2 7.5E-05 57.5 20.0 166 1679-1906 633-800 (814)
326 3o48_A Mitochondria fission 1 91.6 0.6 2.1E-05 47.4 9.1 71 1782-1853 39-113 (134)
327 1y8m_A FIS1; mitochondria, unk 90.7 2.2 7.4E-05 43.9 12.2 73 1781-1854 37-113 (144)
328 4gns_B Protein CSD3, chitin bi 89.7 1.8 6.2E-05 57.2 13.8 55 1821-1875 340-394 (754)
329 4b4t_P 26S proteasome regulato 89.3 18 0.00063 44.9 22.1 98 1819-1916 138-245 (445)
330 3mkq_A Coatomer beta'-subunit; 88.8 3.5 0.00012 55.4 16.4 130 1757-1917 660-794 (814)
331 3o48_A Mitochondria fission 1 88.2 2.1 7.2E-05 43.4 9.8 86 1798-1888 23-112 (134)
332 3spa_A Mtrpol, DNA-directed RN 87.5 3.5 0.00012 55.6 14.0 116 1780-1897 124-244 (1134)
333 4b4t_P 26S proteasome regulato 87.3 9.9 0.00034 47.4 17.7 172 1675-1850 137-327 (445)
334 1y8m_A FIS1; mitochondria, unk 86.4 3.2 0.00011 42.7 10.0 86 1798-1888 22-111 (144)
335 3ffl_A Anaphase-promoting comp 86.0 3 0.0001 44.0 9.9 25 1819-1843 123-147 (167)
336 3spa_A Mtrpol, DNA-directed RN 85.6 5.4 0.00018 53.8 14.3 96 1715-1812 128-231 (1134)
337 2r7d_A Ribonuclease II family 85.0 1.1 3.9E-05 56.0 7.3 59 1456-1527 402-460 (469)
338 2ff4_A Probable regulatory pro 84.7 6 0.00021 48.4 13.7 102 1760-1880 126-233 (388)
339 3ffl_A Anaphase-promoting comp 84.6 6.4 0.00022 41.6 11.5 91 1788-1878 25-148 (167)
340 3mkq_B Coatomer subunit alpha; 83.7 23 0.00078 37.9 15.7 43 1761-1808 17-60 (177)
341 4gns_B Protein CSD3, chitin bi 81.7 5.3 0.00018 52.8 11.9 110 1733-1844 266-397 (754)
342 4b4t_R RPN7, 26S proteasome re 80.1 7.4 0.00025 48.3 12.1 102 1675-1780 131-239 (429)
343 2rf4_A DNA-directed RNA polyme 78.2 4.7 0.00016 44.9 8.4 66 319-384 127-203 (214)
344 4b4t_S RPN3, 26S proteasome re 76.9 19 0.00066 45.0 14.1 99 1715-1815 182-303 (523)
345 2eqj_A Metal-response element- 75.9 13 0.00045 32.5 8.4 52 538-619 9-62 (66)
346 2rf4_A DNA-directed RNA polyme 75.8 6.8 0.00023 43.6 8.8 64 761-824 129-204 (214)
347 4b4t_R RPN7, 26S proteasome re 73.7 13 0.00045 46.0 11.8 119 1732-1850 110-240 (429)
348 3h8z_A FragIle X mental retard 73.6 4 0.00014 41.1 5.6 97 585-705 14-115 (128)
349 2ff4_A Probable regulatory pro 71.3 33 0.0011 41.7 14.4 109 1797-1923 130-239 (388)
350 3mkq_B Coatomer subunit alpha; 70.2 77 0.0026 33.9 14.9 129 1720-1878 11-141 (177)
351 3d0f_A Penicillin-binding 1 tr 68.7 8.2 0.00028 37.7 6.6 55 585-639 33-93 (106)
352 3h8z_A FragIle X mental retard 66.8 7.3 0.00025 39.3 5.7 55 761-815 14-70 (128)
353 3d0f_A Penicillin-binding 1 tr 65.0 13 0.00043 36.4 7.0 56 1366-1421 32-93 (106)
354 1zbp_A Hypothetical protein VP 64.8 22 0.00074 40.6 9.8 117 1792-1919 6-130 (273)
355 4fhn_B Nucleoporin NUP120; pro 64.4 58 0.002 45.7 16.4 22 1681-1702 848-869 (1139)
356 2r7d_A Ribonuclease II family 64.2 9.2 0.00031 47.8 7.3 59 1366-1436 402-460 (469)
357 4b4t_S RPN3, 26S proteasome re 62.5 28 0.00094 43.7 11.0 100 1750-1851 182-303 (523)
358 1qsa_A Protein (soluble lytic 62.3 3.4E+02 0.012 34.9 24.0 35 1671-1705 98-132 (618)
359 1qsa_A Protein (soluble lytic 61.0 3.6E+02 0.012 34.7 22.1 116 1797-1917 229-347 (618)
360 1zbp_A Hypothetical protein VP 59.4 1.1E+02 0.0037 35.0 14.2 116 1759-1880 7-128 (273)
361 3i4o_A Translation initiation 57.6 13 0.00044 34.2 5.1 62 1460-1527 15-78 (79)
362 1wfq_A UNR protein; beta-barre 52.8 51 0.0017 31.0 8.5 53 1366-1424 14-68 (89)
363 1jjg_A M156R; beta barrel, S1 52.3 23 0.00079 32.8 5.7 63 582-646 29-94 (102)
364 2k5n_A Putative cold-shock pro 50.4 50 0.0017 29.9 7.8 48 1461-1515 3-52 (74)
365 1h9m_A MODG, molybdenum-bindin 49.3 60 0.0021 32.9 9.6 49 234-285 82-135 (145)
366 4hcz_A PHD finger protein 1; p 47.9 26 0.0009 29.7 4.9 35 585-619 16-52 (58)
367 1wfq_A UNR protein; beta-barre 47.6 58 0.002 30.6 8.0 56 1455-1516 13-69 (89)
368 2yty_A Cold shock domain-conta 46.0 38 0.0013 31.8 6.5 52 1366-1423 14-67 (88)
369 4ady_A RPN2, 26S proteasome re 45.9 6.8E+02 0.023 33.8 20.7 178 1684-1866 79-276 (963)
370 1c9o_A CSPB, cold-shock protei 43.4 75 0.0026 27.9 7.7 50 1371-1424 2-53 (66)
371 2wpv_A GET4, UPF0363 protein Y 43.1 4.6E+02 0.016 30.6 17.8 25 1851-1875 133-157 (312)
372 2yty_A Cold shock domain-conta 42.3 38 0.0013 31.8 5.9 53 1456-1514 14-67 (88)
373 3dlm_A Histone-lysine N-methyl 42.3 2.8E+02 0.0096 30.2 13.2 92 499-618 22-121 (213)
374 4b9x_A TDRD1, tudor domain-con 41.0 2.1E+02 0.007 31.7 12.9 139 456-606 12-177 (226)
375 3a0j_A Cold shock protein; OB- 37.2 76 0.0026 28.6 6.8 50 1371-1424 2-53 (73)
376 4b9w_A TDRD1, tudor domain-con 36.8 3.3E+02 0.011 29.4 13.5 139 456-606 12-177 (201)
377 2ytx_A Cold shock domain-conta 36.4 46 0.0016 31.9 5.5 51 1367-1423 15-67 (97)
378 2xk0_A Polycomb protein PCL; t 36.2 1.1E+02 0.0037 27.0 7.0 51 538-618 11-61 (69)
379 2ytx_A Cold shock domain-conta 35.3 39 0.0013 32.4 4.8 52 1457-1514 15-67 (97)
380 2k5n_A Putative cold-shock pro 34.9 72 0.0025 28.8 6.3 48 588-642 2-52 (74)
381 3cam_A Cold-shock domain famil 33.3 1.2E+02 0.0041 26.8 7.3 50 1462-1515 3-54 (67)
382 4fhn_B Nucleoporin NUP120; pro 32.8 3.8E+02 0.013 37.3 16.5 121 1754-1878 817-964 (1139)
383 4dt4_A FKBP-type 16 kDa peptid 32.2 3.3E+02 0.011 28.7 11.9 75 867-990 70-145 (169)
384 1h95_A CSD, Y-box binding prot 30.0 2.3E+02 0.0078 25.8 8.9 59 1260-1318 6-65 (79)
385 1h95_A CSD, Y-box binding prot 29.8 1.7E+02 0.0059 26.7 8.0 56 587-642 7-65 (79)
386 1h9m_A MODG, molybdenum-bindin 29.8 3.5E+02 0.012 26.9 11.7 51 972-1027 82-136 (145)
387 2eqj_A Metal-response element- 28.7 65 0.0022 28.3 4.5 30 625-654 9-48 (66)
388 3lxu_X Tripeptidyl-peptidase 2 27.6 2.5E+02 0.0086 39.2 12.5 31 1657-1687 1123-1153(1354)
389 2cpt_A SKD1 protein, vacuolar 27.6 2E+02 0.0068 28.4 8.6 16 1865-1880 31-46 (117)
390 2kcm_A Cold shock domain famil 27.5 98 0.0033 28.0 5.8 47 1372-1422 2-51 (74)
391 3i2z_B RNA chaperone, negative 27.3 2.7E+02 0.0091 24.8 8.6 54 1262-1319 5-59 (71)
392 3i2z_B RNA chaperone, negative 27.3 1.6E+02 0.0056 26.2 7.3 51 1370-1424 5-58 (71)
393 2w2u_A Hypothetical P60 katani 27.3 1.5E+02 0.0051 27.4 7.2 26 1864-1899 31-56 (83)
394 1g6p_A Cold shock protein TMCS 27.1 72 0.0025 28.1 4.8 48 1372-1423 2-51 (66)
395 1jjg_A M156R; beta barrel, S1 27.0 2E+02 0.0069 26.7 7.5 66 962-1029 24-92 (102)
396 1ya0_A SMG-7 transcript varian 26.0 1.4E+02 0.0048 37.4 9.0 71 1788-1860 157-228 (497)
397 2e5p_A Protein PHF1, PHD finge 25.7 1.3E+02 0.0045 26.3 5.7 35 585-619 22-58 (68)
398 2v6x_A Vacuolar protein sortin 25.0 3.2E+02 0.011 25.1 9.1 17 1864-1880 25-41 (85)
399 2v6y_A AAA family ATPase, P60 25.0 1.7E+02 0.006 26.9 7.2 17 1864-1880 23-39 (83)
400 1c9o_A CSPB, cold-shock protei 24.4 3.5E+02 0.012 23.5 8.8 51 1264-1318 3-53 (66)
401 2vb2_X Copper protein, cation 23.4 3.2E+02 0.011 25.5 8.7 53 1417-1469 17-76 (88)
402 2qcp_X Cation efflux system pr 23.2 3.4E+02 0.012 24.8 8.7 53 1417-1469 9-68 (80)
403 4a5x_A MITD1, MIT domain-conta 23.0 2.8E+02 0.0097 25.7 8.2 17 1864-1880 28-44 (86)
404 1ya0_A SMG-7 transcript varian 22.3 3.5E+02 0.012 33.8 11.6 77 1750-1828 153-230 (497)
405 1wfd_A Hypothetical protein 15 22.1 3.1E+02 0.011 25.7 8.5 15 1830-1844 27-41 (93)
406 3p8b_B Transcription antitermi 21.6 2.6E+02 0.0089 28.8 8.7 50 783-833 64-129 (152)
407 1fr3_A MOP, molybdate/tungstat 21.5 46 0.0016 28.8 2.5 49 234-285 7-59 (67)
408 1gut_A Mopii, molybdate bindin 21.4 44 0.0015 29.2 2.3 47 235-284 8-59 (68)
409 3a0j_A Cold shock protein; OB- 21.2 3E+02 0.01 24.6 7.8 51 1264-1318 3-53 (73)
410 3ts2_A Protein LIN-28 homolog 21.1 1.7E+02 0.0057 30.3 7.0 51 1370-1424 9-69 (148)
411 4b9x_A TDRD1, tudor domain-con 21.0 5.4E+02 0.018 28.3 11.8 134 542-689 12-176 (226)
412 1g6p_A Cold shock protein TMCS 20.7 1.4E+02 0.0049 26.1 5.4 51 1264-1318 2-52 (66)
413 3kf6_B Protein TEN1; OB fold, 20.7 2.3E+02 0.0079 27.2 7.0 53 128-196 15-69 (105)
414 1x65_A UNR protein; cell-free 20.5 52 0.0018 31.0 2.6 48 1460-1514 8-56 (89)
415 3kae_A CDC27, possible protein 20.5 7.7E+02 0.026 26.0 11.4 99 1751-1850 116-240 (242)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.96 E-value=3.3e-28 Score=283.86 Aligned_cols=210 Identities=20% Similarity=0.135 Sum_probs=181.8
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeecccc
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLD 1338 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~~~ 1338 (1924)
+|++++|+|++++++ |+||+++ +.+|++|.+|++ . ++|+.|+|+|+. |. .+++.+|++.+
T Consensus 6 ~G~~v~g~V~~~~~~--G~fv~~~-g~egllp~se~~-------~---~vGdevev~v~~-d~----~~r~iat~~~p-- 65 (285)
T 3go5_A 6 LASFIVGLIIDENDR--FYFVQKD-GQTYALAKEEGQ-------H---TVGDTVKGFAYT-DM----KQKLRLTTLEV-- 65 (285)
T ss_dssp TTEEEEEEEEEECSS--EEEEEET-TEEEEEEGGGCC-------C---CTTSEEEEEEEE-CT----TSCEEEECSCC--
T ss_pred CCCEEEEEEEEEECC--EEEEEcC-CeEEEEEHHHCc-------c---ccCCEEEEEEEE-CC----CCCEEEecccc--
Confidence 899999999999999 9999997 899999999993 2 699999999984 54 35677776432
Q ss_pred CCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEe-eceEEEEeCC-CcEEEEECccCCCcccCCCCccCCCCc
Q 000176 1339 GMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGK 1416 (1924)
Q Consensus 1339 ~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~-~~G~fV~l~~-~v~g~v~~selsd~~~~~~~~~f~~G~ 1416 (1924)
.+++|+++.|+|++++ ++|+||+++. +++||||+++++|.... .+++||
T Consensus 66 -------------------------~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~~----~~~~Gd 116 (285)
T 3go5_A 66 -------------------------TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKEL----WPKKGD 116 (285)
T ss_dssp -------------------------CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGGG----SCCTTC
T ss_pred -------------------------cccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCccccc----ccCCCC
Confidence 2679999999999999 7999999997 79999999999986443 357999
Q ss_pred EEEEEEEEEeCCCCEEEEEeecc-cccccchhccccccccCCCcEEEEEEEEeecceEEE-EEecCceeEEeeccccCcc
Q 000176 1417 LVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI-TIENTNLVGLCHVSELSED 1494 (1924)
Q Consensus 1417 ~V~~kVl~vd~e~~ri~LSlk~~-~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV-~l~~~~v~gl~h~sels~~ 1494 (1924)
.|.++ +.+|+ ++||.+|+|+. ..+||. .....+++|++|+|+|+++++||+|| .+++ ++.||||+||+++
T Consensus 117 ~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~----~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~-g~~Glih~SEl~~- 188 (285)
T 3go5_A 117 QLYIR-LEVDK-KDRIWGLLAYQEDFQRLA----RPAYNNMQNQNWPAIVYRLKLSGTFVYLPEN-NMLGFIHPSERYA- 188 (285)
T ss_dssp EEEEE-EEECT-TSCEEEEECCHHHHHHHC----CCCCSCCTTCEEEEEEEEEETTEEEEEETTT-TEEEEECGGGCSS-
T ss_pred EEEEE-EEECC-CCcEEEEehhhhhcchhh----hhhhhCCCCCEEEEEEEEEeCCcEEEEEeCC-CeEEEEEHHHccc-
Confidence 99765 69998 79999999976 344443 24688999999999999999999999 9976 8999999999984
Q ss_pred cccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1495 HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1495 ~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
.+++||.|+|+|++||++++||+||+|+..+
T Consensus 189 -------~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~ 219 (285)
T 3go5_A 189 -------EPRLGQVLDARVIGFREVDRTLNLSLKPRSF 219 (285)
T ss_dssp -------CCCTTCEEEEEEEEEETTTTEEEEECSCCCC
T ss_pred -------cCCCCCEEEEEEEEEECCCCeEEEEeChhhh
Confidence 4899999999999999999999999999765
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.94 E-value=1.5e-25 Score=261.50 Aligned_cols=225 Identities=17% Similarity=0.117 Sum_probs=191.9
Q ss_pred CCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEeeCCCCccc
Q 000176 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663 (1924)
Q Consensus 584 ~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~~~~~~~ 663 (1924)
.+|++..|+|+++.++|+||++ ++++||||.+++. . ++||.|.|.|+ .|.+ +|+.+|.+
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~-~g~egllp~se~~-------~---~vGdevev~v~-~d~~-~r~iat~~-------- 63 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQK-DGQTYALAKEEGQ-------H---TVGDTVKGFAY-TDMK-QKLRLTTL-------- 63 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEE-TTEEEEEEGGGCC-------C---CTTSEEEEEEE-ECTT-SCEEEECS--------
T ss_pred cCCCEEEEEEEEEECCEEEEEc-CCeEEEEEHHHCc-------c---ccCCEEEEEEE-ECCC-CCEEEecc--------
Confidence 4799999999999999999999 5899999999993 1 89999999998 4764 56667753
Q ss_pred ccccCCCCEEEEEEEEEc-cCcEEEEEEecC-ceeEEEeCCcCCCCccchhhhccccCCCCeEeeEEEeecCCCeEEEEe
Q 000176 664 DDLVKLGSLVSGVVDVVT-PNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741 (1924)
Q Consensus 664 ~~~~~~G~iv~g~V~~~~-~~g~~V~l~~~~-~~~g~i~~~~Lsd~~~~~~~~~~~~~~G~~i~~vl~id~~~~~i~ls~ 741 (1924)
.+.+++|+++.|+|++++ ++|+||.+ +. +.+|+||.++++... ..++++|+++...|.+|+ ++|+.+|+
T Consensus 64 ~p~~~~G~~~~g~V~~v~~~~GaFVdi--G~~~~d~lvp~sel~~~~------~~~~~~Gd~v~v~l~iD~-~~Ri~ls~ 134 (285)
T 3go5_A 64 EVTATQDQFGWGRVTEVRKDLGVFVDT--GLPDKEIVVSLDILPELK------ELWPKKGDQLYIRLEVDK-KDRIWGLL 134 (285)
T ss_dssp CCCSCSSSCEEEEEEEEETTTEEEEEC--SCTTCCEEEEGGGSCSSG------GGSCCTTCEEEEEEEECT-TSCEEEEE
T ss_pred cccccCCCEEEEEEEEEccCceEEEEE--CCCCcEEEEEHHHCCccc------ccccCCCCEEEEEEEECC-CCcEEEEe
Confidence 245789999999999999 79999999 65 699999999998643 136799999987778888 68999999
Q ss_pred ccc-ccchhccCCCCcCccCCCCEEEEEEEEEecCeEEE-EECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEe
Q 000176 742 KYS-LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV-RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819 (1924)
Q Consensus 742 K~s-l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV-~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~i 819 (1924)
|+. ..++|... .+.+++|+.+.|+|++++++|+|| .+.+++.||+|.|++++ .+++||.|+|+|++|
T Consensus 135 k~~~~~~~~~~~---~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~--------~l~~Gd~v~~~V~~i 203 (285)
T 3go5_A 135 AYQEDFQRLARP---AYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA--------EPRLGQVLDARVIGF 203 (285)
T ss_dssp CCHHHHHHHCCC---CCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS--------CCCTTCEEEEEEEEE
T ss_pred hhhhhcchhhhh---hhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccc--------cCCCCCEEEEEEEEE
Confidence 976 56676543 456889999999999999999999 99999999999999973 589999999999999
Q ss_pred eCCCCeEEEeecccccCC--CchhhHHHHHHH
Q 000176 820 NSETGRITLSLKQSCCSS--TDASFMQEHFLL 849 (1924)
Q Consensus 820 d~~~~r~~lSlk~~~~~~--~d~~~~~~~~~~ 849 (1924)
|++++|+.||+|+..... .+++.+.+||.+
T Consensus 204 d~~d~kI~LSlk~~~~~~~~~~a~~il~~L~~ 235 (285)
T 3go5_A 204 REVDRTLNLSLKPRSFEMLENDAQMILTYLES 235 (285)
T ss_dssp ETTTTEEEEECSCCCCCCCCHHHHHHHHHHHH
T ss_pred ECCCCeEEEEeChhhhhccchHHHHHHHHHHh
Confidence 999999999999986432 556777777764
No 3
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.88 E-value=1.1e-21 Score=258.85 Aligned_cols=238 Identities=14% Similarity=0.229 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHhcC
Q 000176 1675 SFVWIKYMAFMLSMA-------DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV-KVFQRALQYC 1746 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~-------e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~-~vferAl~~~ 1746 (1924)
..+|.+|+.|+.+.+ ..++++.+|++||..+|... .+|+.|+.++...++ .+.|+ ++|+||+..+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~-----~lW~~ya~~~~~~~~--~~~a~r~il~rAi~~~ 374 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP-----EIWFNMANYQGEKNT--DSTVITKYLKLGQQCI 374 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH-----HHHHHHHHHHHHHSC--CTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHhcCc--HHHHHHHHHHHHHHhC
Confidence 589999999988754 24567789999999999754 499999999999994 47785 9999999999
Q ss_pred CCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhc-----------CC-----------CHHHHHHHHHHHHhc-CHHHHH
Q 000176 1747 DPK-KVHLALLGLYERTEQNKLADELLYKMIKKF-----------KH-----------SCKVWLRRVQRLLKQ-QQEGVQ 1802 (1924)
Q Consensus 1747 ~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~-----------~~-----------~~~vw~~~a~~l~~~-~~~~A~ 1802 (1924)
|.. .+|+.|+.++++.+++++|+++|++++... |. ...+|+.|+.+..+. ..+.||
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 864 889999999999999999999999999763 32 356899999999999 999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1803 AVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1803 ~l~~ral~~~p~~~~~~~~~~~A~le~~~g-~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
++|++|++..|... ..+|..+|.+|++.+ ++++||.+|+++|+.+|++..+|..|++++...|+.++||.+|+||+..
T Consensus 455 ~vf~~A~~~~~~~~-~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 455 KIFGKCRRLKKLVT-PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHTGGGSC-THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCC-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999844332 489999999999876 5999999999999999999999999999999999999999999999983
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1882 ~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
..+++.++.+|..|++||.++|+.+.++.|++|+++...
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 333456778999999999999999999999999987643
No 4
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=3.9e-21 Score=232.80 Aligned_cols=242 Identities=17% Similarity=0.262 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH-------cCCC-----C
Q 000176 1672 PNSSFVWIKYMAFMLSM----ADV----EKARSIAERALQTINIREENEKLNIWVAYFNLENE-------YGNP-----P 1731 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~----~e~----dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~-------~g~~-----~ 1731 (1924)
|.+..+|..|+.|+.+. .+. ++|+.+|++|+...|... .+|+.|+.++.. .|+. .
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~-----~~w~~~~~~~~~~~~~l~~~g~~~~~~~~ 79 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHhchhhhhccchhhcccc
Confidence 44567999999998875 344 789999999999888644 599999998764 4631 0
Q ss_pred HHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQ-YCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK-VWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1732 ~e~a~~vferAl~-~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~-vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
.++|+.+|+||++ ..|. ..+|..++.++.+.|++++|.++|+++++..|.++. +|..|+.++.+. ++++|+.+|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2889999999999 4665 489999999999999999999999999998888876 999999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCc
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPP 1885 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~-~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~-~~~p 1885 (1924)
|++..|.. ..+|..+|.+++. .|++++|+.+|++++..+|++.++|..|++++.+.|++++|+.+|++++.. .++|
T Consensus 160 a~~~~p~~--~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTCC--THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 99998876 4789999998875 699999999999999999999999999999999999999999999999994 2476
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1886 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1886 k~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
+....+|..|+.||..+|+.+.+..++++|++...
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 54458999999999999999999999999998654
No 5
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.85 E-value=5.1e-20 Score=236.94 Aligned_cols=252 Identities=18% Similarity=0.150 Sum_probs=207.6
Q ss_pred CCchHHHHHHHHHh---CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhcCCcch---------hh--------
Q 000176 1657 APRTPDEFERLVRS---SPNSSFVWIKYMAFML----SMADVEKARSIAERALQTINIREE---------NE-------- 1712 (1924)
Q Consensus 1657 ~p~a~~~ferll~~---~P~s~~~W~~y~~~~~----~~~e~dkAr~v~eraL~~i~~~ee---------~e-------- 1712 (1924)
....+..|++++.. +|++..+|..|+.|+. .+++++.+|.+|+|||. +|.... +|
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~ 142 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITG 142 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccH
Confidence 35667899999964 7999999999999976 45689999999999997 565321 00
Q ss_pred ----------------------------HHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHhcCCC-HHHHHHHHHH
Q 000176 1713 ----------------------------KLNIWVAYFNLENEYGNPP-----EEAVVKVFQRALQYCDP-KKVHLALLGL 1758 (1924)
Q Consensus 1713 ----------------------------kl~lWiayl~le~~~g~~~-----~e~a~~vferAl~~~~~-~~i~~~l~~i 1758 (1924)
.+.+|..|+.+|...+... .+.+..+|++|+..+|. ..+|+.|+.+
T Consensus 143 ~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 143 KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEY 222 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 0127888888877542101 24577899999998876 4999999999
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHH----------------------------------------HHHHHHHHHHhc-C
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHSCK----------------------------------------VWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~~~----------------------------------------vw~~~a~~l~~~-~ 1797 (1924)
+.+.|+.++|+.+|++++.. |.+.. +|..|+.|+.+. .
T Consensus 223 ~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 99999999999999999988 76544 455555555566 8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g-~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfe 1876 (1924)
.+.||.+|++| ..|.. ...+|..+|.+|+..+ ++++||.+|+++++.+|++.++|..|++++.+.|+.++||.+|+
T Consensus 302 ~~~AR~i~~~A--~~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 302 LELFRKLFIEL--GNEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHHH--TTSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--hCCCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999999999 44543 3579999999999877 69999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1877 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1877 ral~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
|+. +. ..+|..|++||..+|+.+.++.+++++++.+.
T Consensus 379 r~~------k~-~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 379 RLE------KT-SRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HSC------CB-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHH------HH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 973 22 37999999999999999999999999999775
No 6
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.84 E-value=3.4e-19 Score=235.24 Aligned_cols=254 Identities=11% Similarity=0.141 Sum_probs=184.2
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC-CCHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN-PPEEAV 1735 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~-~~~e~a 1735 (1924)
.++.+..||+.|..+|.+...|.+|+.++.+.++++.||.+|+|++..+|... .+|+.|+.+|...++ .+.+.+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~-----~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA-----NIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHTC--CCCHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHhhCCcchHHHH
Confidence 34455567777777777777777777777777777777777777777777543 477777777777762 004777
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHhCCh--------HHHHHHHHHHHHhc----CCCHHHHHHHHHHHHh-----
Q 000176 1736 VKVFQRALQYC---DPKKVHLALLGLYERTEQN--------KLADELLYKMIKKF----KHSCKVWLRRVQRLLK----- 1795 (1924)
Q Consensus 1736 ~~vferAl~~~---~~~~i~~~l~~i~~~~gk~--------e~A~~~fe~~lk~~----~~~~~vw~~~a~~l~~----- 1795 (1924)
+.+|+||+..+ +.-++|..|+.+..+.+.. +..+++|++++... +.+..+|..|+.|+..
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 77777777777 5557777777766665543 33446777776542 3456777777777652
Q ss_pred ----c-CHHHHHHHHHHHHHhCCCCCh-----------------------------------------------------
Q 000176 1796 ----Q-QQEGVQAVVQRALLSLPRHKH----------------------------------------------------- 1817 (1924)
Q Consensus 1796 ----~-~~~~A~~l~~ral~~~p~~~~----------------------------------------------------- 1817 (1924)
+ +.+.|+.+|+|+|. .|...+
T Consensus 203 ~~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred cHHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 2 56667777777764 343322
Q ss_pred --------------------HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 000176 1818 --------------------IKFISQTAILEFKNG-------VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1870 (1924)
Q Consensus 1818 --------------------~~~~~~~A~le~~~g-------~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ 1870 (1924)
+.+|..|+.||...+ ..+|.+.+|+++|..+|...++|..|++++...|+.+.
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHH
Confidence 355666666666543 24567889999999999999999999999999999999
Q ss_pred HH-HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1871 IR-GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1871 ar-~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
|+ .+|+||+. ..|+.. .+|..|+.+|...|+.+.|+.+|++|++.+
T Consensus 362 a~r~il~rAi~--~~P~s~-~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 362 VITKYLKLGQQ--CIPNSA-VLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 96 99999998 455666 699999999999999999999999999875
No 7
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=7.2e-19 Score=229.74 Aligned_cols=238 Identities=17% Similarity=0.264 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHcC----CH----HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH-------cCCCCHH------
Q 000176 1675 SFVWIKYMAFMLSMA----DV----EKARSIAERALQTINIREENEKLNIWVAYFNLENE-------YGNPPEE------ 1733 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~----e~----dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~-------~g~~~~e------ 1733 (1924)
..+|..|+.++.... +. .+|..+|++|+...|... .+|+.|+.++.. .|+. +
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~-----~~w~~~~~~~~~~~~~~~~~g~~--~~a~~~~ 302 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDM--NNAKLFS 302 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHTTTCC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhchhhhhccch--hhhhhhh
Confidence 479999999987642 33 478899999999888644 599999999886 5743 5
Q ss_pred -HHHHHHHHHHh-cCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhc-CHHHHHHHHHHH
Q 000176 1734 -AVVKVFQRALQ-YCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-KVWLRRVQRLLKQ-QQEGVQAVVQRA 1808 (1924)
Q Consensus 1734 -~a~~vferAl~-~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~-~vw~~~a~~l~~~-~~~~A~~l~~ra 1808 (1924)
.|+.+|+||++ .+|. ..+|..++.++.+.|++++|.++|++++...+.++ .+|+.|+.++.+. ++++|+++|++|
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 89999999997 6665 59999999999999999999999999999888775 6999999999999 999999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCch
Q 000176 1809 LLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPPK 1886 (1924)
Q Consensus 1809 l~~~p~~~~~~~~~~~A~le~-~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~-~~~pk 1886 (1924)
++..|.. ..+|...|.+++ ..|++++|+.+|+++|+.+|++.++|..|++++.+.|+.++||.+|++++.. ..+|.
T Consensus 383 l~~~~~~--~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCTTCC--THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HhccCCc--hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 9988765 366777777765 5899999999999999999999999999999999999999999999999984 23555
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1887 ~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
.+..+|..|+.||..+|+.+.+..++.||+++...
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 55679999999999999999999999999998764
No 8
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.1e-18 Score=211.32 Aligned_cols=219 Identities=17% Similarity=0.240 Sum_probs=195.9
Q ss_pred CchHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Q 000176 1658 PRTPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADV-------EKARSIAERALQTINIREENEKLNIWVAYFNL 1723 (1924)
Q Consensus 1658 p~a~~~ferll~~~P~s~~~W~~y~~~~~~-------~~e~-------dkAr~v~eraL~~i~~~ee~ekl~lWiayl~l 1723 (1924)
.++...|++++..+|+++.+|+.|+.++.+ .|++ ++|+.+|+||++.+++.. ..+|..|+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~----~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----MLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc----HHHHHHHHHH
Confidence 356679999999999999999999999874 5875 999999999998543322 3699999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCCCH-H-HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c-CHH
Q 000176 1724 ENEYGNPPEEAVVKVFQRALQYCDPK-K-VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-Q-QQE 1799 (1924)
Q Consensus 1724 e~~~g~~~~e~a~~vferAl~~~~~~-~-i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~-~-~~~ 1799 (1924)
+...| +.++|+++|++|++..|.. . +|..++.++.+.|++++|+.+|+++++..+....+|+.++.+... . +++
T Consensus 109 ~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 109 EESRM--KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHTT--CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred HHhcC--CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999 5699999999999988764 4 999999999999999999999999999888889999988888765 4 999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1800 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE---YP-KRTDLWSIYLDQEIRLGDVDLIRGLF 1875 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~---~P-k~~dlw~~y~~le~k~gd~~~ar~lf 1875 (1924)
+|+.+|+++++.+|.+ ..+|..++.++...|++++|+.+|++++.. .| +...+|..|+.++.+.|+.+.|+.++
T Consensus 187 ~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999986 699999999999999999999999999995 44 47889999999999999999999999
Q ss_pred HHHHhcCCCch
Q 000176 1876 ERAISLSLPPK 1886 (1924)
Q Consensus 1876 eral~~~~~pk 1886 (1924)
+|++. ..|+
T Consensus 265 ~~a~~--~~p~ 273 (308)
T 2ond_A 265 KRRFT--AFRE 273 (308)
T ss_dssp HHHHH--HTTT
T ss_pred HHHHH--Hccc
Confidence 99998 5554
No 9
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=3.7e-18 Score=222.94 Aligned_cols=251 Identities=14% Similarity=0.261 Sum_probs=209.8
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH-HcCCCCH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN-EYGNPPE 1732 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~-~~g~~~~ 1732 (1924)
.++..+++..|++++..+|++..+|+.|+.++.+.+++++|+.+|+||+...|. ..+|+.|+.+.. ..+++
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~------~~lw~~~~~~~~~~~~~~-- 96 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH------IDLWKCYLSYVRETKGKL-- 96 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC------HHHHHHHHHHHHHHTTTS--
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHccch--
Confidence 456889999999999999999999999999999999999999999999988872 348999998654 45643
Q ss_pred HHH----HHHHHHHHhcCC----CHHHHHHHHHHHHH---------hCChHHHHHHHHHHHHhcCCC--HHHHHHHHHH-
Q 000176 1733 EAV----VKVFQRALQYCD----PKKVHLALLGLYER---------TEQNKLADELLYKMIKKFKHS--CKVWLRRVQR- 1792 (1924)
Q Consensus 1733 e~a----~~vferAl~~~~----~~~i~~~l~~i~~~---------~gk~e~A~~~fe~~lk~~~~~--~~vw~~~a~~- 1792 (1924)
+.| +.+|++|+...+ ...+|..++.++.+ .++++.|+.+|+++++. |.. ..+|..|..|
T Consensus 97 ~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e 175 (530)
T 2ooe_A 97 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYE 175 (530)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHH
Confidence 444 459999998643 35999999999876 78999999999999973 322 3556555443
Q ss_pred ----------------------------------------------------------------HHhc-----C----HH
Q 000176 1793 ----------------------------------------------------------------LLKQ-----Q----QE 1799 (1924)
Q Consensus 1793 ----------------------------------------------------------------l~~~-----~----~~ 1799 (1924)
.... + .+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~ 255 (530)
T 2ooe_A 176 EGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITK 255 (530)
T ss_dssp HHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHH
T ss_pred HhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHH
Confidence 2211 0 12
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q 000176 1800 GVQAVVQRALLSLPRHKHIKFISQTAILEFK-------NGVAD-------RGRSMFEGILS-EYPKRTDLWSIYLDQEIR 1864 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p~~~~~~~~~~~A~le~~-------~g~~e-------~Ar~lfe~aL~-~~Pk~~dlw~~y~~le~k 1864 (1924)
+|..+|++|+..+|.+ ..+|..||.++.+ .|+++ +|+.+|+++++ ..|++..+|..|+.++.+
T Consensus 256 ~a~~~y~~al~~~p~~--~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHH--PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5667899999999877 6999999999986 79987 99999999997 799999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1865 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
.|++++|+.+|++++. .+|.....+|..|+.++.+.|+.+.|+.+|++|++
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999999999999 77776436899999999999999999999999975
No 10
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.79 E-value=1.8e-18 Score=222.50 Aligned_cols=251 Identities=15% Similarity=0.143 Sum_probs=202.2
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH----cCC
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENE----YGN 1729 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~-e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~----~g~ 1729 (1924)
++.+.+...|+|++...| +..+|..|+.|..+.+ ..+..+.+|++|+.++.. +.....+|..|+.++.. .+
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~--d~~s~~iW~~Yi~f~~~~~~~~~- 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN--YWDSYGLYKEYIEEEGKIEDEQT- 103 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT--CTTCHHHHHHHHHHTSSCSSHHH-
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--CcccHHHHHHHHHHHHhchhhhH-
Confidence 457788999999999888 8999999999998877 457889999999998653 12224799999999653 34
Q ss_pred CCHHHHHHHHHHHHhcCCC--HH------------------------------------------------HHHHHHHHH
Q 000176 1730 PPEEAVVKVFQRALQYCDP--KK------------------------------------------------VHLALLGLY 1759 (1924)
Q Consensus 1730 ~~~e~a~~vferAl~~~~~--~~------------------------------------------------i~~~l~~i~ 1759 (1924)
..+.++.+|+||++.... .. +|..|+.+.
T Consensus 104 -~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 104 -RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp -HHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 357899999999984221 13 455555554
Q ss_pred HHhC--C-----hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh--------------
Q 000176 1760 ERTE--Q-----NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------- 1817 (1924)
Q Consensus 1760 ~~~g--k-----~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-------------- 1817 (1924)
.... - ..++..+|++++..+|..+.+|+.|+.|+.++ +.++|+.+|+||+.. |....
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~ 261 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAV 261 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHH
Confidence 3321 1 34577899999999999999999999999999 999999999999999 87531
Q ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHH
Q 000176 1818 ------------------------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIR 1872 (1924)
Q Consensus 1818 ------------------------~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g-d~~~ar 1872 (1924)
..+|..|+.++.+.+++++||.+|+++ ...+...++|..++.+|...+ ++++||
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHH
Confidence 145777888888888999999999999 544446789999999999877 699999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1873 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1873 ~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rA 1915 (1924)
.+|++++. ..|+.. .+|..|++||...|+.+.++.+|++|
T Consensus 341 ~ife~al~--~~~~~~-~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 341 NIFSSGLL--KHPDST-LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHH--HCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHH--HCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999 456666 58999999999999999999999986
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.76 E-value=1.4e-16 Score=198.73 Aligned_cols=252 Identities=12% Similarity=0.085 Sum_probs=221.0
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..++...|++++..+|++...|..++.++...|++++|...|+++++..|.. ...|..+..+....| +.+
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~ 186 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-----AVAWSNLGCVFNAQG--EIW 186 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTTT--CHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--CHH
Confidence 3567888889999999999999999999999999999999999999999876642 357888888888888 558
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
.|...|++|++..|.. ..|..++.++...+++++|...|++++...|.+..+|..++..+... ++++|...|++++..
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999988874 88999999999999999999999999999898999999999999988 999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1891 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~l 1891 (1924)
.|.. ..+|..+|.++.+.|++++|...|++++...|.+.+.|..++.++.+.|++++|..+|++++. ..|... ..
T Consensus 267 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~ 341 (388)
T 1w3b_A 267 QPHF--PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFA-AA 341 (388)
T ss_dssp CSSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCH-HH
T ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcH-HH
Confidence 8876 578999999999999999999999999999999999999999999999999999999999988 667666 57
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1892 FKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1892 w~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
|..+.......|+.+.|...|++|++
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888889999999999998875
No 12
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.76 E-value=2.6e-16 Score=196.16 Aligned_cols=249 Identities=16% Similarity=0.131 Sum_probs=149.6
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
..++...|++++..+|++...|..++..+.+.|++++|...|+++++..|.. ...|..+..+....| +.++|.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~~A~ 155 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-----YCVRSDLGNLLKALG--RLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC-----THHHHHHHHHHHTTS--CHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcc--CHHHHH
Confidence 4455555555555555555555555555555555555555555555544421 134555555555555 336666
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
+.|+++++..|.. ..|..++.+|...|++++|...|++++...|.....|..++..+... ++++|...|++++...|.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6666666655542 55666666666666666666666666666666666666666666665 666666666666666655
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~ 1894 (1924)
+ ..+|..+|..+...|++++|...|++++...|...++|..++..+.+.|+++.|..+|++++. ..|... ..|..
T Consensus 236 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~ 310 (388)
T 1w3b_A 236 H--AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHA-DSLNN 310 (388)
T ss_dssp C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCH-HHHHH
T ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccH-HHHHH
Confidence 4 356666666666666666666666666666666666666666666666666666666666666 444444 45555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1895 YLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1895 yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
........|+.+.+...+++|++
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666666666654
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=2.2e-16 Score=190.80 Aligned_cols=252 Identities=11% Similarity=0.040 Sum_probs=175.6
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcC-CCCH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG-NPPE 1732 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g-~~~~ 1732 (1924)
.++..++...|++++..+|.+...|..++..+...+++++|...++++++..|... ..|..+.......+ .+
T Consensus 35 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~-- 107 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP-----VSWFAVGCYYLMVGHKN-- 107 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-----HHHHHHHHHHHHSCSCH--
T ss_pred cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH-----HHHHHHHHHHHHhhhhH--
Confidence 34566677777777777777777777777777777777777777777776655432 35666666666666 43
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
++|...|++|++..|.. ..|..++.+|...|++++|...|++++...+.....|..++..+... ++++|...|+++++
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66777777777766653 67777777777777777777777777777777777777777777777 77777777777777
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY---------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~---------Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~ 1881 (1924)
..|.+ ..+|..+|.+++..|++++|...|++++... |....+|..++.++.+.|++++|...|++++.
T Consensus 188 ~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~- 264 (330)
T 3hym_B 188 IAPED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV- 264 (330)
T ss_dssp TCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred hCCCC--hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 77665 4677777777777777777777777777665 55556777777777777777777777777776
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1882 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1882 ~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..|... ..|..+.......|+.+.|...+++|++
T Consensus 265 -~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 265 -LIPQNA-STYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp -HSTTCS-HHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred -hCccch-HHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 444444 4666666666667777777777766654
No 14
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=5.4e-17 Score=200.50 Aligned_cols=259 Identities=11% Similarity=-0.003 Sum_probs=225.1
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|++...|..++..+...|++++|+..|+++++..|.. ...|..+..++...| +.+
T Consensus 78 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~ 150 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN-----LKALMALAVSYTNTS--HQQ 150 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHccc--cHH
Confidence 4567889999999999999999999999999999999999999999999876643 358999999999999 569
Q ss_pred HHHHHHHHHHhcCCCH-HHH----------HHHHHHHHHhCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhc-CHH
Q 000176 1734 AVVKVFQRALQYCDPK-KVH----------LALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLKQ-QQE 1799 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~----------~~l~~i~~~~gk~e~A~~~fe~~lk~~~~--~~~vw~~~a~~l~~~-~~~ 1799 (1924)
+|...|+++++..|.. ..| ..++.+|...|++++|.+.|++++...|. .+.+|..++..+... +++
T Consensus 151 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~ 230 (365)
T 4eqf_A 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230 (365)
T ss_dssp HHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999988764 333 34588999999999999999999999998 899999999999999 999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1800 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal 1879 (1924)
+|...|+++++..|.+ ..+|..+|.++...|++++|+..|++++...|+...+|..++.++.+.|++++|+..|++++
T Consensus 231 ~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 231 RAIDAFNAALTVRPED--YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999887 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchh-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000176 1880 SLSLPPKK-----------MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923 (1924)
Q Consensus 1880 ~~~~~pk~-----------~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~~ 1923 (1924)
. +.|+. ...+|..+.......|..+.++.+..++++.++..+
T Consensus 309 ~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~ 361 (365)
T 4eqf_A 309 S--LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAF 361 (365)
T ss_dssp H--HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTT
T ss_pred H--hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhc
Confidence 8 33331 125788888888889999999999988877766654
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=2.6e-16 Score=194.01 Aligned_cols=257 Identities=12% Similarity=0.036 Sum_probs=231.9
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|++..+|..++..+...|++++|...|+++++..|.. ...|..+..+....| +.+
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~g--~~~ 149 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN-----QTALMALAVSFTNES--LQR 149 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcC--CHH
Confidence 4557889999999999999999999999999999999999999999999877642 357888889989999 569
Q ss_pred HHHHHHHHHHhcCCCH-HHHH----------------HHHHHHHHhCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHH
Q 000176 1734 AVVKVFQRALQYCDPK-KVHL----------------ALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLL 1794 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~----------------~l~~i~~~~gk~e~A~~~fe~~lk~~~~--~~~vw~~~a~~l~ 1794 (1924)
+|...|+++++..|.. ..|. .++.++ ..|++++|...|++++...|. ...+|..++..+.
T Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 9999999999998764 3332 355555 899999999999999999988 8999999999999
Q ss_pred hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1795 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1795 ~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~ 1873 (1924)
.. ++++|...|++++...|.. ..+|..+|.++...|++++|...|++++...|....+|..++.++.+.|+++.|..
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99 9999999999999999877 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchh-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000176 1874 LFERAISLSLPPKK-----------MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923 (1924)
Q Consensus 1874 lferal~~~~~pk~-----------~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~~ 1923 (1924)
.|++++. +.|+. . ..|..+.......|+.+.+..++.++++.+...+
T Consensus 307 ~~~~al~--~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 364 (368)
T 1fch_A 307 HFLEALN--MQRKSRGPRGEGGAMSE-NIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364 (368)
T ss_dssp HHHHHHH--HHHTC------CCCCCH-HHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHT
T ss_pred HHHHHHH--hCCCCCCccccccchhh-HHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhc
Confidence 9999998 55444 4 6899999999999999999999999999988765
No 16
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=5e-16 Score=187.44 Aligned_cols=258 Identities=9% Similarity=0.031 Sum_probs=228.9
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..++...|++++..+|++...|..++..+...+++++|...++++++..|.. ...|..+..+....| +.+
T Consensus 34 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~--~~~ 106 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-----IAVHAALAVSHTNEH--NAN 106 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-----HHHHHHHHHHHHHcC--CHH
Confidence 4557789999999999999999999999999999999999999999999876643 357888888888999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHH--------------HH-HHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLAL--------------LG-LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1796 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l--------------~~-i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~- 1796 (1924)
+|...|+++++..|.. ..|..+ +. ++...|++++|...|++++...+....+|..++..+...
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Confidence 9999999999988764 444444 44 577889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1876 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfe 1876 (1924)
++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..++.++.+.|+++.|...|+
T Consensus 187 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 187 NYDSAAANLRRAVELRPDD--AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999876 58999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCch------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000176 1877 RAISLSLPPK------------KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923 (1924)
Q Consensus 1877 ral~~~~~pk------------~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~~ 1923 (1924)
+++. ..|. .. ..|..+.......|+.+.+..++++|++.....+
T Consensus 265 ~a~~--~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 265 RAIY--MQVGGTTPTGEASREATR-SMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHH--HHTTSCC-----CCTHHH-HHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHH--hCCccccccccchhhcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 9998 5555 44 6888888889999999999999999998877643
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.72 E-value=6.1e-15 Score=180.02 Aligned_cols=249 Identities=11% Similarity=0.037 Sum_probs=120.2
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
..+|...|++++..+|++..+|..++..+...|++++|...++++++..|.. ...|..+..+....| +.+.|.
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~A~ 91 (359)
T 3ieg_A 19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF-----TAARLQRGHLLLKQG--KLDEAE 91 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHT--CHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----chHHHHHHHHHHHcC--ChHHHH
Confidence 4445555555555555555555555555555555555555555555443321 124444444444444 234555
Q ss_pred HHHHHHHhcCC-------------------------------------------------C-HHHHHHHHHHHHHhCChH
Q 000176 1737 KVFQRALQYCD-------------------------------------------------P-KKVHLALLGLYERTEQNK 1766 (1924)
Q Consensus 1737 ~vferAl~~~~-------------------------------------------------~-~~i~~~l~~i~~~~gk~e 1766 (1924)
..|+++++..| . ..+|..++.+|...|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3ieg_A 92 DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR 171 (359)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHH
Confidence 55555555444 3 244444444444555555
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHH------------HHHHHHcCC
Q 000176 1767 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQT------------AILEFKNGV 1833 (1924)
Q Consensus 1767 ~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~------------A~le~~~g~ 1833 (1924)
+|...|++++...|.++.+|..++..+... ++++|...|+++++..|... .+|..+ |..++..|+
T Consensus 172 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (359)
T 3ieg_A 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK--RCFAHYKQVKKLNKLIESAEELIRDGR 249 (359)
T ss_dssp HHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccch--HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555555555544444455555555544444 55555555555555444432 222211 444444555
Q ss_pred HHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 000176 1834 ADRGRSMFEGILSEYPKRTDL----WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1909 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~Pk~~dl----w~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~ 1909 (1924)
+++|...|++++...|++... |..++..+.+.|++++|...|++++. ..|... ..|..+.......|+.+.|.
T Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 250 YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ--MEPDNV-NALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccH-HHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555544322 33344455555555555555555555 344444 34555555555555555555
Q ss_pred HHHHHHHH
Q 000176 1910 YVKQKAME 1917 (1924)
Q Consensus 1910 ~v~~rAle 1917 (1924)
..|++|++
T Consensus 327 ~~~~~a~~ 334 (359)
T 3ieg_A 327 QDYEAAQE 334 (359)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 55555544
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=2.8e-16 Score=194.13 Aligned_cols=237 Identities=16% Similarity=0.056 Sum_probs=208.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHH
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVH 1752 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~ 1752 (1924)
+...|+..+..+.+.|++++|...|+++++..|.. ...|..+..++...| +.++|...|++|++..|. ...|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-----AEAWQFLGITQAENE--NEQAAIVALQRCLELQPNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHH
Confidence 44559999999999999999999999999887743 358999999999999 569999999999999887 4999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHH----------HHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHH
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR----------VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFI 1821 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~----------a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~ 1821 (1924)
..++.+|...|++++|...|+++++..|.....|..+ +..+... ++++|..+|++++...|...+..+|
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 9999999999999999999999999887666666554 7888888 9999999999999999985457899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
..+|.++...|++++|...|++++...|++..+|..++..+...|++++|+..|++++. +.|... ..|..+......
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~ 293 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFI-RSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCch-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 677777 688888889999
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q 000176 1902 VGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1902 ~G~~~~~~~v~~rAle~v~ 1920 (1924)
.|+.+.|...|++|++.-.
T Consensus 294 ~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 9999999999999998764
No 19
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.71 E-value=1.3e-15 Score=201.11 Aligned_cols=253 Identities=8% Similarity=0.002 Sum_probs=222.9
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|++...|..++..+.+.|++++|..+++++++..|.. ...|..++.++...| +.+
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g--~~~ 390 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK-----AVTWLAVGIYYLCVN--KIS 390 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-----HHHHHHHHHHHHHTT--CHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc-----HHHHHHHHHHHHHhc--cHH
Confidence 3557788889999998889999999999999999999999999999998766542 357888888888999 569
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
+|.+.|+++++..|. ...|..++.+|.+.|++++|.++|++++...+.+..+|..++..+.+. ++++|.++|+++++.
T Consensus 391 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999998876 479999999999999999999999999998888999999999999988 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE------YPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~------~Pk~-~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
.|.+ ..+|..++.++.+.|++++|..+|++++.. .|.. ..+|..++..+.+.|+++.|..+|++++. ..
T Consensus 471 ~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 546 (597)
T 2xpi_A 471 FQYD--PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LS 546 (597)
T ss_dssp CCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred CCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hC
Confidence 8875 588999999999999999999999999987 5554 67899999999999999999999999998 55
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
|... ..|..+.......|+.++|..+|++|++.
T Consensus 547 p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 547 TNDA-NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 6666 68888889999999999999999999875
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.70 E-value=3e-15 Score=182.81 Aligned_cols=242 Identities=7% Similarity=0.028 Sum_probs=208.9
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---Ccch--------------------
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN---IREE-------------------- 1710 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~---~~ee-------------------- 1710 (1924)
.++..++...|++++..+|++...|..++.++...|++++|...|+++++..| ...+
T Consensus 50 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (359)
T 3ieg_A 50 MGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577899999999999999999999999999999999999999999998766 2110
Q ss_pred ---------------------hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHH
Q 000176 1711 ---------------------NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLA 1768 (1924)
Q Consensus 1711 ---------------------~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A 1768 (1924)
.....+|..+..+....+ +.+.|...|+++++..|. ...|..++.+|...|++++|
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG--EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 001245666667777778 559999999999998876 49999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHH------------HHHHHhc-CHHHHHHHHHHHHHhCCCCChH--HHHHHHHHHHHHcCC
Q 000176 1769 DELLYKMIKKFKHSCKVWLRR------------VQRLLKQ-QQEGVQAVVQRALLSLPRHKHI--KFISQTAILEFKNGV 1833 (1924)
Q Consensus 1769 ~~~fe~~lk~~~~~~~vw~~~------------a~~l~~~-~~~~A~~l~~ral~~~p~~~~~--~~~~~~A~le~~~g~ 1833 (1924)
...|++++..++.....|..+ +..+... ++++|...|++++...|..... .++..+|.++...|+
T Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC
Confidence 999999999999999988765 6668888 9999999999999999986432 457788999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000176 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~ 1900 (1924)
+++|...|++++...|.+..+|..++.++...|++++|...|++++. +.|+.. .+|..+.....
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~l~~~~~ 351 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQ-QIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCh-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 777777 57776665544
No 21
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.70 E-value=2.4e-15 Score=191.00 Aligned_cols=256 Identities=10% Similarity=0.027 Sum_probs=224.8
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHH------------H
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY------------F 1721 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiay------------l 1721 (1924)
.++..+|...|++++..+|++..+|..++..+...|++++|...|+++++..|... .....|..+ .
T Consensus 73 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 73 MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN--EEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999999999999999999999998766422 001244443 3
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHH
Q 000176 1722 NLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQE 1799 (1924)
Q Consensus 1722 ~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~ 1799 (1924)
......+ +.+.|...|+++++..|. ..+|..++.+|...|++++|.+.|++++...+.+..+|..++..+... +++
T Consensus 151 ~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 151 LNAFGSG--DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp HHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 4466778 559999999999999886 489999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH
Q 000176 1800 GVQAVVQRALLSLPRHKHIKFISQT------------AILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEI 1863 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p~~~~~~~~~~~------------A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d----lw~~y~~le~ 1863 (1924)
+|...|++++...|.. ..+|..+ |..++..|++++|..+|++++...|.+.. +|..++.++.
T Consensus 229 ~A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 306 (450)
T 2y4t_A 229 LSLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS 306 (450)
T ss_dssp HHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999887 3556555 88999999999999999999999999854 7888899999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1864 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
+.|+++.|...|++++. +.|... ..|..........|+.+.|...+++|++.
T Consensus 307 ~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 307 KDEKPVEAIRVCSEVLQ--MEPDNV-NALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHH--hCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999998 667777 68989999999999999999999999764
No 22
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.70 E-value=4.7e-15 Score=188.24 Aligned_cols=254 Identities=11% Similarity=0.065 Sum_probs=228.1
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..+..++...| +.+
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~ 111 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF-----TAARLQRGHLLLKQG--KLD 111 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcC--CHH
Confidence 4568899999999999999999999999999999999999999999999877643 358889999999999 569
Q ss_pred HHHHHHHHHHhcCCCH----HHHHHH------------HHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q 000176 1734 AVVKVFQRALQYCDPK----KVHLAL------------LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1796 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~----~i~~~l------------~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~- 1796 (1924)
+|...|+++++..|.. ..|..+ +..|...|++++|...|++++...+.+..+|..++..+...
T Consensus 112 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (450)
T 2y4t_A 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG 191 (450)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC
Confidence 9999999999998874 555555 55699999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY------------LDQEIR 1864 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y------------~~le~k 1864 (1924)
++++|...|++++...|.. ..+|..+|.++...|++++|...|++++...|.....|..+ +..+.+
T Consensus 192 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 192 EPRKAISDLKAASKLKNDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269 (450)
T ss_dssp CGGGGHHHHHHHHHHHCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 68999999999999999999999999999999999999887 889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1865 LGDVDLIRGLFERAISLSLPPKKMK---FLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~~~~~pk~~k---~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.|+++.|..+|++++. ..|.... ..|..........|+.+.|...+++|++.
T Consensus 270 ~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 270 DGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999998 5555431 35677778888899999999999999864
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.69 E-value=2.8e-15 Score=181.06 Aligned_cols=243 Identities=15% Similarity=0.111 Sum_probs=215.5
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~-e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
++..++...|++++..+|++...|..++.++...+ ++++|...|+++++..|... ..|..+..+....+ +.+
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~--~~~ 142 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG-----PAWIAYGHSFAVES--EHD 142 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT-----HHHHHHHHHHHHHT--CHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH-----HHHHHHHHHHHHcc--CHH
Confidence 45678889999999999999999999999999999 99999999999998766432 47999999999999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
.|...|++|++..|.. ..|..++.+|...|++++|.+.|++++...+.+..+|..++..+... ++++|...|++++..
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999998874 88999999999999999999999999999999999999999999999 999999999999998
Q ss_pred CCC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000176 1812 LPR-------HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1812 ~p~-------~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~ 1884 (1924)
.+. .....+|..+|.++...|++++|...|++++...|++..+|..++.++.+.|++++|...|++++. +.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~ 300 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LR 300 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TC
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cC
Confidence 632 122479999999999999999999999999999999999999999999999999999999999998 77
Q ss_pred chhHHHHHHHHHH-HHHHcCCHHH
Q 000176 1885 PKKMKFLFKKYLE-YEKSVGEEER 1907 (1924)
Q Consensus 1885 pk~~k~lw~~yl~-~E~~~G~~~~ 1907 (1924)
|... ..|..... ++...|+.+.
T Consensus 301 p~~~-~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 301 RDDT-FSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp SCCH-HHHHHHHHHHHTTTTC---
T ss_pred CCch-HHHHHHHHHHHHHhCchhc
Confidence 7777 45555555 5677777653
No 24
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.68 E-value=5.8e-15 Score=194.92 Aligned_cols=252 Identities=9% Similarity=-0.003 Sum_probs=227.4
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1736 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~ 1736 (1924)
..++...|++++.. |.+...|..++..+.+.|++++|..+|+++++..|... ..|..++......| ..++|.
T Consensus 288 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g--~~~~A~ 359 (597)
T 2xpi_A 288 LRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNL-----DVYPLHLASLHESG--EKNKLY 359 (597)
T ss_dssp HHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC-----TTHHHHHHHHHHHT--CHHHHH
T ss_pred HHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH-----HHHHHHHHHHHHhC--CHHHHH
Confidence 45567777777655 78899999999999999999999999999998766432 47889999999999 569999
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
.+|+++++..|. ...|..++.+|.+.|++++|.++|++++...+.+...|..++..+.+. ++++|.++|++++...|.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999988876 489999999999999999999999999999999999999999999999 999999999999999987
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKF 1890 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~----~~~pk~~k~ 1890 (1924)
+. .+|..++..+.+.|++++|..+|++++...|.+..+|..++.++.+.|++++|..+|++++.. ...|.....
T Consensus 440 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 440 TH--LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp CS--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 64 899999999999999999999999999999999999999999999999999999999999983 235554226
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1891 LFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1891 lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.|..++......|+.+.|..++++|++.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999874
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.67 E-value=2.6e-15 Score=185.01 Aligned_cols=254 Identities=14% Similarity=0.063 Sum_probs=220.4
Q ss_pred CCCchHH-HHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC
Q 000176 1656 DAPRTPD-EFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1730 (1924)
Q Consensus 1656 ~~p~a~~-~ferll~~~P~s----~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~ 1730 (1924)
+..++.. .|++++...|++ ...|+..+..+...|++++|...|+++++..|.. ...|..+.......|
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g-- 112 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-----MEAWQYLGTTQAENE-- 112 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-----HHHHHHHHHHHHHTT--
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCc--
Confidence 3555666 777777667765 4669999999999999999999999999876643 357888888889999
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHH----------------HHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL----------------RRVQRL 1793 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~----------------~~a~~l 1793 (1924)
+.+.|...|++|++..|. ...|..++.+|...|++++|.+.|++++...+.....|. .++.++
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 559999999999999886 489999999999999999999999999999988777775 344444
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar 1872 (1924)
.. ++++|...|++++...|......+|..+|.++...|++++|...|++++...|++..+|..++.++...|+++.|.
T Consensus 193 -~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 66 9999999999999999985447899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1873 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1873 ~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
..|++++. +.|... ..|..+.......|+.+.|...+++|++.-.
T Consensus 272 ~~~~~al~--~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 272 AAYRRALE--LQPGYI-RSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHH--HCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999 667777 6888888889999999999999999998754
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=2.9e-15 Score=171.42 Aligned_cols=199 Identities=14% Similarity=0.042 Sum_probs=169.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1750 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1750 (1924)
|+++..|..++..+.+.|++++|...|+++++..|... ..|..+..+....| +.++|...|++|++..|.. .
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~P~~~~ 74 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP-----EALYWLARTQLKLG--LVNPALENGKTLVARTPRYLG 74 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH-----HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHH
Confidence 78889999999999999999999999999998777533 47888888888999 5699999999999999875 8
Q ss_pred HHHHHHHHHHHh-----------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH
Q 000176 1751 VHLALLGLYERT-----------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI 1818 (1924)
Q Consensus 1751 i~~~l~~i~~~~-----------gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~ 1818 (1924)
.|..++.+|... |++++|...|+++++..|.+..+|+.++..+... ++++|...|+++++.. . +.
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--~~ 151 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D--TP 151 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C--CH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c--ch
Confidence 999999999999 9999999999999999999999999999999999 9999999999999998 3 37
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.+|..+|.++...|++++|...|++++...|.+..+|..++.++...|+++.|...|+++-.
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998654
No 27
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.64 E-value=8.4e-14 Score=180.92 Aligned_cols=254 Identities=13% Similarity=0.037 Sum_probs=217.1
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|+++.+|..++.++.+.|++++|...|+++++..|... ..|..+..++...|+ .+
T Consensus 38 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~--~~ 110 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS-----KALLRRASANESLGN--FT 110 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTC--HH
T ss_pred hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH-----HHHHHHHHHHHHcCC--HH
Confidence 56699999999999999999999999999999999999999999999998776432 356666666555552 24
Q ss_pred HHH-----------------------------------------------------------------------------
Q 000176 1734 AVV----------------------------------------------------------------------------- 1736 (1924)
Q Consensus 1734 ~a~----------------------------------------------------------------------------- 1736 (1924)
+|.
T Consensus 111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 444
Q ss_pred --------------------------------HHHHHHHhcCCCH--------HHHHHHHHHHHHhCChHHHHHHHHHHH
Q 000176 1737 --------------------------------KVFQRALQYCDPK--------KVHLALLGLYERTEQNKLADELLYKMI 1776 (1924)
Q Consensus 1737 --------------------------------~vferAl~~~~~~--------~i~~~l~~i~~~~gk~e~A~~~fe~~l 1776 (1924)
..|+++++..|.. ..|..++.++...|++++|...|++++
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4445555555542 357777788899999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000176 1777 KKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1777 k~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw 1855 (1924)
...+. ..+|..++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+..+|
T Consensus 271 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 271 NLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp HHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred hcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99887 99999999999888 9999999999999999876 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1856 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1856 ~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
..++.++...|+++.|..+|++++. ..|... .+|..+.......|+.+.|...+++|++.-.
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKL--KFPTLP-EVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998 566666 5888888999999999999999999988653
No 28
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.62 E-value=6.3e-18 Score=183.64 Aligned_cols=123 Identities=18% Similarity=0.234 Sum_probs=101.6
Q ss_pred CCCCCEEEEEEEEEeeceEEEEe--CCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l--~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
.++|+++.|+|++++++|+||+| .++++|+||+|+++|.++.++.+.|++||.|.++|+++|+++++|.||+|....+
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~ 92 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPE 92 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCcC
Confidence 37999999999999999999999 5789999999999999999999999999999999999999999999999998887
Q ss_pred ccchhccccccccCCCcEEEEEEEEeec-ceEEEEEecCceeEEeeccccCcc
Q 000176 1443 TASQSEINNLSNLHVGDIVIGQIKRVES-YGLFITIENTNLVGLCHVSELSED 1494 (1924)
Q Consensus 1443 ~~~~~~~~~~~~l~~G~~v~G~V~~v~~-~GvFV~l~~~~v~gl~h~sels~~ 1494 (1924)
||.. ....++.|+++.|.|+++++ || |+|++ +++||+|+|++++.
T Consensus 93 p~~~----~~~~~~~g~~v~g~v~~i~~~~g--v~l~~-giegl~h~s~~~~~ 138 (182)
T 1kl9_A 93 EAIK----CEDKFTKSKTVYSILRHVAEVLE--YTKDE-QLESLFQRTAWVFD 138 (182)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHHTT--CCSHH-HHHHHHHHTHHHHH
T ss_pred hHHH----HHHhccCCCEEEEEEEEchhhcC--CcccC-ChhheEEeeecchh
Confidence 7643 25678999999999999998 99 78877 89999999988765
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=3.3e-14 Score=176.64 Aligned_cols=232 Identities=8% Similarity=0.020 Sum_probs=208.3
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD-VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1732 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e-~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~ 1732 (1924)
.++..+|...|+++|..+|++..+|..++..+..+++ +++|...|++|+...|.. ..+|..+..+....|.+
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-----~~a~~~~g~~~~~~g~~-- 182 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-----YQVWHHRRVLVEWLRDP-- 182 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCC--
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHccCH--
Confidence 3568899999999999999999999999999999996 999999999999877753 35899999999999965
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CHHHH-----HHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQEGV-----QAV 1804 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~--~~~~A-----~~l 1804 (1924)
++|...|++|++..|.. ..|..++.++...|++++|.+.|++++...+.+..+|+.++..+... ..++| .+.
T Consensus 183 ~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 183 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 99999999999999875 99999999999999999999999999999999999999999999994 54666 599
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------C-HHHHHH
Q 000176 1805 VQRALLSLPRHKHIKFISQTAILEFKNG--VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG--------D-VDLIRG 1873 (1924)
Q Consensus 1805 ~~ral~~~p~~~~~~~~~~~A~le~~~g--~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g--------d-~~~ar~ 1873 (1924)
|++|+...|.+ ..+|..++.++...| ++++|...++++ ...|++..+|..+++++.+.| + +++|..
T Consensus 263 ~~~Al~l~P~~--~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 263 TLEMIKLVPHN--ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHHHSTTC--HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCC--HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 99999999987 589999999999888 699999999998 889999999999999999874 2 589999
Q ss_pred HHHHH-HhcCCCchhHHHHHHHHHHH
Q 000176 1874 LFERA-ISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1874 lfera-l~~~~~pk~~k~lw~~yl~~ 1898 (1924)
+|+++ +. +.|.+. .+|..+...
T Consensus 340 ~~~~l~~~--~DP~r~-~~w~~~~~~ 362 (382)
T 2h6f_A 340 LCEILAKE--KDTIRK-EYWRYIGRS 362 (382)
T ss_dssp HHHHHHHT--TCGGGH-HHHHHHHHH
T ss_pred HHHHHHHH--hCchhH-HHHHHHHHH
Confidence 99999 87 888887 577766654
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=6.4e-14 Score=168.88 Aligned_cols=235 Identities=12% Similarity=0.030 Sum_probs=206.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHH
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVH 1752 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~ 1752 (1924)
+...|+..+..+...+++++|...|+++++..|.. ...|..+.......+ +.+.|...|+++++..|. ...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~ 92 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER-----EEAWRSLGLTQAENE--KDGLAIIALNHARMLDPKDIAVH 92 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCcCCHHHH
Confidence 44568899999999999999999999999877742 357888888888999 559999999999999886 4899
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHH--------------HH-HHHhc-CHHHHHHHHHHHHHhCCCCC
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR--------------VQ-RLLKQ-QQEGVQAVVQRALLSLPRHK 1816 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~--------------a~-~l~~~-~~~~A~~l~~ral~~~p~~~ 1816 (1924)
..++.+|...|++++|.+.|++++...+....+|..+ +. .+... ++++|...|+++++..|..
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~- 171 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND- 171 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC-
Confidence 9999999999999999999999999998888888777 55 34555 9999999999999999876
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1817 ~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
..+|..+|.++...|++++|...|++++...|.+..+|..++.++...|+++.|...|++++. ..|... ..|....
T Consensus 172 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-~~~~~l~ 247 (327)
T 3cv0_A 172 -AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYV-RVMYNMA 247 (327)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCH-HHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999 666666 5788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1897 EYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1897 ~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
......|+.+.|...+++|++.-.
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC
Confidence 888999999999999999988653
No 31
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=1.6e-14 Score=179.45 Aligned_cols=237 Identities=11% Similarity=0.054 Sum_probs=206.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 000176 1667 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1746 (1924)
Q Consensus 1667 ll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~ 1746 (1924)
++..+|++..+|..++..+...+++++|...|+++++..|.. ...|..+..+....+. +.++|...|++|++.+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~-----~~a~~~~g~~l~~~g~-d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN-----YTVWHFRRVLLKSLQK-DLHEEMNYITAIIEEQ 162 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHC
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC-----HHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHC
Confidence 345678999999999999999999999999999999877743 3589999999999994 1599999999999999
Q ss_pred CCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 000176 1747 DPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQT 1824 (1924)
Q Consensus 1747 ~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~ 1824 (1924)
|.. .+|..++.+|...|++++|...|++++...|.+..+|+.++..+... ++++|...|+++|...|.+ ..+|..+
T Consensus 163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~--~~a~~~l 240 (382)
T 2h6f_A 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQR 240 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence 975 99999999999999999999999999999999999999999999999 9999999999999999987 5899999
Q ss_pred HHHHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1825 AILEFK-NGVADRG-----RSMFEGILSEYPKRTDLWSIYLDQEIRLG--DVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1825 A~le~~-~g~~e~A-----r~lfe~aL~~~Pk~~dlw~~y~~le~k~g--d~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
|.++.. .|..++| ...|++++...|++..+|..++.++.+.| ++++|...++++ . ..|+.. ..+..+.
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~-~al~~La 316 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSP-YLIAFLV 316 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCH-HHHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCH-HHHHHHH
Confidence 999999 5665777 59999999999999999999999999888 689999999887 4 555555 4555566
Q ss_pred HHHHHcC--------C-HHHHHHHHHHH
Q 000176 1897 EYEKSVG--------E-EERIEYVKQKA 1915 (1924)
Q Consensus 1897 ~~E~~~G--------~-~~~~~~v~~rA 1915 (1924)
++..+.| + .+.|..+|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 5555443 2 47788888877
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=5.1e-14 Score=165.56 Aligned_cols=236 Identities=8% Similarity=0.000 Sum_probs=199.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----H
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----K 1749 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~----~ 1749 (1924)
+...|+.++.++...|++++|...|+++++..|... ..|..+...+...+ +.++|.+.|+++++..+. .
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~ 74 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP-----YIYNRRAVCYYELA--KYDLAQKDIETYFSKVNATKAKS 74 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS-----TTHHHHHHHHHHTT--CHHHHHHHHHHHHTTSCTTTCCH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHHh--hHHHHHHHHHHHHhccCchhHHH
Confidence 346788999999999999999999999998777533 36888888888889 559999999999994322 2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.+|...|++++|.+.|+++++..+....+|..++..+... ++++|...|++++...|.. ..+|..+|...
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~ 152 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD--PKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc--HHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999 9999999999999998776 58999999555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC-CCch----hHHHHHHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD---VDLIRGLFERAISLS-LPPK----KMKFLFKKYLEYEK 1900 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd---~~~ar~lferal~~~-~~pk----~~k~lw~~yl~~E~ 1900 (1924)
+..+++++|...|++++...|++...|..++..+...++ ++.|...|++++... ..|. .....|.....+..
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 556799999999999999999999999999999999888 888999999999831 0122 11245666777788
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 000176 1901 SVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1901 ~~G~~~~~~~v~~rAle~ 1918 (1924)
..|+.+.|...+++|++.
T Consensus 233 ~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 233 INRDKVKADAAWKNILAL 250 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 899999999999999875
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=3.6e-14 Score=163.50 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHH
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVH 1752 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~ 1752 (1924)
.+..|+..+..+...+++++|...|+++++..|.. ...|..+.......+ +.+.|...|+++++..+. ..+|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~ 94 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-----AIPYINFANLLSSVN--ELERALAFYDKALELDSSAATAY 94 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCcchHHH
Confidence 45677777888888888888888888888765532 346777777777788 458888888888888765 4888
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000176 1753 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831 (1924)
Q Consensus 1753 ~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~ 1831 (1924)
..++.+|...|++++|.+.|+++++.++....+|..++..+... ++++|...|+++++..|.. ..+|..+|.+++..
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND--TEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888888 8888888888888888765 57888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000176 1832 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1900 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~ 1900 (1924)
|++++|...|++++...|....+|..++.++.+.|+++.|...|++++. +.|... ..|..+..++.
T Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~-~~~~~~~~l~~ 238 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHM-LALHAKKLLGH 238 (243)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCH-HHHHHHTC---
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchH-HHHHHHHHHHh
Confidence 8888899999988888888888888888888888888889888988888 566655 45555544443
No 34
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.7e-14 Score=182.84 Aligned_cols=251 Identities=10% Similarity=0.030 Sum_probs=199.0
Q ss_pred CCCCchHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 000176 1655 KDAPRTPDEFERLVR-----S--S-------PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY 1720 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~-----~--~-------P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiay 1720 (1924)
++..+|...|++++. . + |.+...|..++..+...|++++|...+++++...|. ...|..+
T Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~l 276 (514)
T 2gw1_A 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR------VNSYIYM 276 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC------HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc------HHHHHHH
Confidence 336677777887776 3 3 455678888888888888888888888888876663 3467777
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CH
Q 000176 1721 FNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQ 1798 (1924)
Q Consensus 1721 l~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~ 1798 (1924)
..+....+.+ +.|...|+++++..|.. .+|..++.+|...|++++|...|++++...+.+..+|..++..+... ++
T Consensus 277 ~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 277 ALIMADRNDS--TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF 354 (514)
T ss_dssp HHHHHTSSCC--TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCH
T ss_pred HHHHHHCCCH--HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCH
Confidence 7777777854 78888888888887754 78888888888888888888888888888888888888888888888 88
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCHH
Q 000176 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD------LWSIYLDQEIR---LGDVD 1869 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d------lw~~y~~le~k---~gd~~ 1869 (1924)
++|..+|+++++..|... .+|..+|.+++..|++++|...|++++...|+... +|..++..+.. .|+++
T Consensus 355 ~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 355 DDCETLFSEAKRKFPEAP--EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp HHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred HHHHHHHHHHHHHcccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence 888888888888887764 78888888888888888888888888888777644 88888888888 88888
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.|...|++++. ..|... ..|.....+....|+.+.|...+++|++.
T Consensus 433 ~A~~~~~~a~~--~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 433 EATNLLEKASK--LDPRSE-QAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 88888888887 556666 56777777778888888888888888764
No 35
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.58 E-value=4.8e-14 Score=183.23 Aligned_cols=249 Identities=12% Similarity=0.044 Sum_probs=211.7
Q ss_pred CCchHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC
Q 000176 1657 APRTPDEFERLVRSSPNSSFV-------WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1729 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~-------W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~ 1729 (1924)
..++...|++++..+|++... |..++.++...+++++|...|++++...|. ...|..+..+....+.
T Consensus 218 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 218 LTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHhcC
Confidence 456788899999999998765 455556677889999999999999987663 2467777777777785
Q ss_pred CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 000176 1730 PPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1807 (1924)
Q Consensus 1730 ~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~r 1807 (1924)
+ +.|...|+++++..|. ..+|..++.+|...|++++|.+.|++++...+....+|..++..+... ++++|...|++
T Consensus 292 ~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 292 S--QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp C--HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 9999999999998876 489999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHc----------CCHHHH
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL------WSIYLDQEIRL----------GDVDLI 1871 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl------w~~y~~le~k~----------gd~~~a 1871 (1924)
++...|.+. .+|..+|.++...|++++|...|++++...|..... +...+.++... |+++.|
T Consensus 370 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 370 TKLKFPTLP--EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHHhCCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 999998874 789999999999999999999999999987765443 44556777777 999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1872 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1872 r~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
...|++++. ..|... ..|..+.......|+.+.|...|++|++.
T Consensus 448 ~~~~~~a~~--~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 448 IKLLTKACE--LDPRSE-QAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCCH-HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999998 666666 67888888888999999999999999875
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.7e-13 Score=158.92 Aligned_cols=214 Identities=7% Similarity=-0.033 Sum_probs=129.7
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHHHHHHcCCCCH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--ENEKLNIWVAYFNLENEYGNPPE 1732 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~e--e~ekl~lWiayl~le~~~g~~~~ 1732 (1924)
++..+|...|++++..+ ++...|..++..+...+++++|...+++++...|... ......+|..+.......+ +.
T Consensus 19 ~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 95 (258)
T 3uq3_A 19 RQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG--DL 95 (258)
T ss_dssp TCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CH
T ss_pred ccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc--cH
Confidence 34566666666666655 6666666666666666666666666666665443210 0011345555555555666 34
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
++|...|+++++..+... ++...+++++|...|++++...+....+|..++..+... ++++|...|++++..
T Consensus 96 ~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 96 KKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp HHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 666666666666665533 333344455666666666666555666666666666666 666666666666666
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.|.. ..+|..+|.++...|++++|...|++++...|....+|..++..+.+.|+++.|...|++++.
T Consensus 169 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 169 APED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6554 356666666666666666666666666666666666666666666666666666666666665
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.5e-13 Score=157.53 Aligned_cols=227 Identities=11% Similarity=-0.020 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhcCCC---
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP--EEAVVKVFQRALQYCDP--- 1748 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~--~e~a~~vferAl~~~~~--- 1748 (1924)
....|...+..+...+++++|...|+++++.. .. ...|..+.......++++ .+......+..-...+.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 77 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD-----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV 77 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH
Confidence 46789999999999999999999999999875 22 347888888878877741 23344444444443333
Q ss_pred -HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000176 1749 -KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1826 (1924)
Q Consensus 1749 -~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~ 1826 (1924)
..+|..++.+|...|++++|.+.|++++...+. .. .+... ++++|...|++++...|.. ..+|..+|.
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~-------~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~ 147 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-AD-------ILTKLRNAEKELKKAEAEAYVNPEK--AEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HH-------HHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-hH-------HHHHHhHHHHHHHHHHHHHHcCcch--HHHHHHHHH
Confidence 389999999999999999999999999998765 33 34444 6999999999999988765 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000176 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1827 le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~ 1906 (1924)
+++..|++++|...|++++...|.+..+|..++..+.+.|+++.|...|++++. ..|... ..|..........|+.+
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~-~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFV-RAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHH-HHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999999999999999 667777 57888888899999999
Q ss_pred HHHHHHHHHHHHH
Q 000176 1907 RIEYVKQKAMEYV 1919 (1924)
Q Consensus 1907 ~~~~v~~rAle~v 1919 (1924)
.|...+++|++.-
T Consensus 225 ~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 225 SALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999876
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=6e-14 Score=164.97 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=205.1
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|++...|..++..+...|++++|...+++++. .+...+ -....|..+..+....+ +.+
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~-~~~~~~~~lg~~~~~~~--~~~ 91 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK-AKSADFEYYGKILMKKG--QDS 91 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-CCHHHHHHHHHHHHHTT--CHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-HHHHHHHHHHHHHHHcc--cHH
Confidence 45578899999999999999999999999999999999999999999997 443222 12356888888889999 569
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
+|...|++|++..|.. .+|..++.+|...|++++|.+.|++++...+....+|..++..++.. ++++|...|+++++.
T Consensus 92 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998875 89999999999999999999999999999999999999999445555 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1812 LPRHKHIKFISQTAILEFKNGV---ADRGRSMFEGILSEY---PKR-----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~---~e~Ar~lfe~aL~~~---Pk~-----~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.|.. ...|..+|..+...|+ +++|...|++++... |.. ..+|..++.++.+.|++++|...|++++.
T Consensus 172 ~p~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 172 KPNI--YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp STTC--HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cccc--hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987 5899999999998898 899999999999886 542 35788899999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHH
Q 000176 1881 LSLPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1881 ~~~~pk~~k~lw~~yl~~E 1899 (1924)
+.|.+. ..|.....+.
T Consensus 250 --~~p~~~-~a~~~l~~~~ 265 (272)
T 3u4t_A 250 --LDPTNK-KAIDGLKMKL 265 (272)
T ss_dssp --HCTTCH-HHHHHHC---
T ss_pred --cCccHH-HHHHHhhhhh
Confidence 677776 4666554443
No 39
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.57 E-value=8.5e-14 Score=179.49 Aligned_cols=259 Identities=10% Similarity=-0.022 Sum_probs=223.1
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchh----------------------
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN---------------------- 1711 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~---------------------- 1711 (1924)
.++..+|...|++++..+|++..+|..++..+...|++++|...|++++...|.....
T Consensus 52 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (514)
T 2gw1_A 52 VGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFG 131 (514)
T ss_dssp HTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--
T ss_pred HhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557889999999999999999999999999999999999999999999766532111
Q ss_pred ----------------------------------------------------hHHHHHHHHHHHHHH---cCCCCHHHHH
Q 000176 1712 ----------------------------------------------------EKLNIWVAYFNLENE---YGNPPEEAVV 1736 (1924)
Q Consensus 1712 ----------------------------------------------------ekl~lWiayl~le~~---~g~~~~e~a~ 1736 (1924)
.....|......... .+ +.+.|.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~ 209 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPE--SYDKAD 209 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTT--HHHHHH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhc--cHHHHH
Confidence 002233333333333 46 459999
Q ss_pred HHHHHHHh-----c--CC-------C-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHH
Q 000176 1737 KVFQRALQ-----Y--CD-------P-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1800 (1924)
Q Consensus 1737 ~vferAl~-----~--~~-------~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~ 1800 (1924)
..|+++++ . .| . ...|..++.+|...|++++|...|++++...+. ..+|..++..+... ++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~ 288 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTE 288 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTT
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHH
Confidence 99999999 4 22 1 278999999999999999999999999999988 99999999999999 9999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1801 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1801 A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
|...|++++...|... .+|..+|.+++..|++++|...|++++...|.+..+|..++.++...|+++.|..+|++++.
T Consensus 289 A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 366 (514)
T 2gw1_A 289 YYNYFDKALKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR 366 (514)
T ss_dssp GGGHHHHHHTTCTTCT--HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999998874 79999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1881 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1881 ~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
..|... ..|..+.......|+.+.|...+++|++.-.
T Consensus 367 --~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 367 --KFPEAP-EVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp --HSTTCS-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --HcccCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 555555 5788888888999999999999999988644
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.5e-13 Score=159.65 Aligned_cols=207 Identities=12% Similarity=0.029 Sum_probs=173.7
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-
Q 000176 1671 SPNS-SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP- 1748 (1924)
Q Consensus 1671 ~P~s-~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~- 1748 (1924)
+|.. ..+|..++..+...+++++|...|+++++..|.. ...|..+..+....+ +.++|.+.|+++++..|.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~ 104 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS-----ADAHAALAVVFQTEM--EPKLADEEYRKALASDSRN 104 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCcCc
Confidence 4544 6788888888888899999999999998766532 347777778878888 558889999999888775
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1749 KKVHLALLGLYERTEQNKLADELLYKMIK--KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~gk~e~A~~~fe~~lk--~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
..+|..++.+|...|++++|.+.|++++. ..+....+|..++..+... ++++|...|+++++..|.. ..+|..+|
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la 182 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ--PSVALEMA 182 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc--HHHHHHHH
Confidence 48888889999999999999999999888 6677788888999888888 9999999999999888776 57888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
.+++..|++++|...|++++...|.....|..++.++.+.|+++.|+.+|++++. ..|...
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~ 243 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSL 243 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCH
Confidence 9999999999999999999998898888888888898899999999999999888 555554
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=5.5e-13 Score=151.16 Aligned_cols=208 Identities=13% Similarity=0.047 Sum_probs=187.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-
Q 000176 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP- 1748 (1924)
Q Consensus 1670 ~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~- 1748 (1924)
.+|++...|..++..+...|++++|...++++++..|.. ...|..+..+....+ +.+.|...|+++++..|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~ 75 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-----ELAWLVRAEIYQYLK--VNDKAQESFRQALSIKPDS 75 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTC
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-----hHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCC
Confidence 468889999999999999999999999999999877643 357888888888899 569999999999999876
Q ss_pred HHHHHHHHHHHHHh-CChHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 000176 1749 KKVHLALLGLYERT-EQNKLADELLYKMIK--KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQT 1824 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~-gk~e~A~~~fe~~lk--~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~ 1824 (1924)
...|..++.+|... |++++|...|++++. .++....+|..++..+... ++++|...|+++++..|.+ ..+|..+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l 153 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF--PPAFKEL 153 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--chHHHHH
Confidence 48999999999999 999999999999998 5566689999999999999 9999999999999999876 5899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1825 AILEFKNGVADRGRSMFEGILSEYP-KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1825 A~le~~~g~~e~Ar~lfe~aL~~~P-k~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
|.+++..|++++|...|++++...| .+...|...+.++...|+.+.|..+++.++. ..|...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~ 216 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSE 216 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCH
Confidence 9999999999999999999999999 9999999999999999999999999999987 455544
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=4.5e-13 Score=153.14 Aligned_cols=194 Identities=14% Similarity=0.078 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
..|..+.......| +.++|...|++|++..|.. ..|..++.+|.+.|++++|...|+++++..|++...|..++..+
T Consensus 6 ~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALG--RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 47888888888999 5699999999999999875 99999999999999999999999999999999999999999988
Q ss_pred Hhc------------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1794 LKQ------------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1794 ~~~------------~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
... ++++|...|+++++..|.+ ..+|..+|.++...|++++|...|+++++.. .+..+|..++.+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 753 7899999999999999987 5899999999999999999999999999999 999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1862 EIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1862 e~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
+...|+++.|...|++++. ..|... ..|..+.......|+.+.+...|+++-
T Consensus 161 ~~~~g~~~~A~~~~~~al~--~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALE--QAPKDL-DLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCh-HHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999 777777 578888888888999999988888764
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=3.8e-13 Score=154.87 Aligned_cols=204 Identities=12% Similarity=0.093 Sum_probs=179.7
Q ss_pred cCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++..+|...|++++..+|++...|..++..+...+++++|...++++++..|.. ...|..+..+....+ +.+
T Consensus 36 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~--~~~ 108 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA-----ATAYYGAGNVYVVKE--MYK 108 (243)
T ss_dssp ------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----hHHHHHHHHHHHHhc--cHH
Confidence 3457888999999999999999999999999999999999999999999876642 357888888888999 569
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
.|...|+++++..+. ..+|..++.+|...|++++|...|++++...+....+|..++..+... ++++|...|+++++.
T Consensus 109 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999876 589999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
.|.. ..+|..+|.+++..|++++|...|++++...|++..+|..+..+....+
T Consensus 189 ~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 189 DPGH--ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CTTC--HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred Cccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9876 5899999999999999999999999999999999999998877765544
No 44
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.52 E-value=5.1e-13 Score=160.12 Aligned_cols=245 Identities=11% Similarity=0.038 Sum_probs=146.5
Q ss_pred CCCCchHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1655 KDAPRTPDEFERLVRSSPNS-SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s-~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
+...+++..++++...+|++ ...+.-++..++.+|+++.|...++.. .+ ..+..+..+..+....+ +.+
T Consensus 13 g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~-----~~~~a~~~la~~~~~~~--~~~ 82 (291)
T 3mkr_A 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SA-----PELQAVRMFAEYLASHS--RRD 82 (291)
T ss_dssp TCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SC-----HHHHHHHHHHHHHHCST--THH
T ss_pred HHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CC-----hhHHHHHHHHHHHcCCC--cHH
Confidence 34444555555544444544 345555666667777776666554331 11 11233334444444445 446
Q ss_pred HHHHHHHHHHhc--CCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1734 AVVKVFQRALQY--CDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1734 ~a~~vferAl~~--~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
+|.+.|++++.. .|. ..+|+.++.+|.+.|++++|.+.|++ +.+..+|..++..+.+. ++++|...|++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 233 36667777777777777777777766 56667777777777766 7777777777777
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK 1889 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k 1889 (1924)
+..|......+...|..+....|++++|..+|++++..+|.+..+|+.++..+.+.|+++.|...|++++. ..|..+
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~- 234 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDSGHP- 234 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-
Confidence 76665422222233344444556677777777777777777777777777777777777777777777776 556666
Q ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHH
Q 000176 1890 FLFKKYLEYEKSVGEEE-RIEYVKQKAME 1917 (1924)
Q Consensus 1890 ~lw~~yl~~E~~~G~~~-~~~~v~~rAle 1917 (1924)
..|..++.+....|+.. .+..+++++++
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555566553 35566666654
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=1.6e-12 Score=151.06 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
...|..+.......+.+ ++|...|+++++..|. ..+|..++.+|...|++++|.+.|++++...+....+|..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNT--EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCT--GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 56888888888899955 9999999999999876 48999999999999999999999999999999999999999999
Q ss_pred HHhc-CHHHHHHHHHHHHH--hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALL--SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1869 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~--~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~ 1869 (1924)
+... ++++|..+|++++. ..|. +..+|..+|.+++..|++++|...|++++...|.+..+|..++.++...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPE--RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTT--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 9999 99999999999998 4444 36899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.|..+|++++. ..|... ..|.....+....|+.+.+..+++++++.
T Consensus 193 ~A~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQ--GGGQNA-RSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHT--TSCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCcCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999998 666666 57778888888899999999999999765
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=1.2e-12 Score=144.48 Aligned_cols=169 Identities=15% Similarity=0.072 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
..+|..+.+.+...| +.++|.+.|++|++.+|.. ..|..++.+|.+.|++++|...+++++...+....+|..++..
T Consensus 5 ~~iy~~lG~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKG--DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 358999999999999 5599999999999999875 9999999999999999999999999999999999999999999
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~a 1871 (1924)
+... +++.|...+.+++...|.+ ..+|..+|.+++..|++++|...|+++++..|.+..+|..++..+.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVY--ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999 9999999999999999887 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhH
Q 000176 1872 RGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1872 r~lferal~~~~~pk~~ 1888 (1924)
...|++|+. +.|+.+
T Consensus 161 ~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHh--CCccCH
Confidence 999999999 777765
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=9.1e-13 Score=164.05 Aligned_cols=265 Identities=10% Similarity=0.006 Sum_probs=218.7
Q ss_pred cCCCCchHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHHHHcC
Q 000176 1654 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYG 1728 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s----~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~-ee~ekl~lWiayl~le~~~g 1728 (1924)
.++..++...|++++...|++ ..+|..++..+...|++++|...+++++...... ........|..+..+....|
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 456889999999999999998 4688999999999999999999999998753211 12233467778888888889
Q ss_pred CCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCC--------------------hHHHHHHHHHHHHhcC-
Q 000176 1729 NPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQ--------------------NKLADELLYKMIKKFK- 1780 (1924)
Q Consensus 1729 ~~~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk--------------------~e~A~~~fe~~lk~~~- 1780 (1924)
+.+.|...|++|++..+. ..+|..++.+|...|+ +++|...|++++..+.
T Consensus 102 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 102 --NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 559999999999987653 2589999999999999 9999999999887642
Q ss_pred -----CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1781 -----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1781 -----~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
....+|..++..+... ++++|...|++++...+.... ..++..+|.+++..|++++|...|++++...|.
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 2355788999999999 999999999999988765422 348999999999999999999999999988765
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1851 R------TDLWSIYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1851 ~------~dlw~~y~~le~k~gd~~~ar~lferal~~----~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
. ..+|..++.++...|++++|...|++++.. ...+... ..|..+..+....|+.+.|...+++|++...
T Consensus 260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG-RACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5 568899999999999999999999999972 1122223 4677777788889999999999999999865
Q ss_pred h
Q 000176 1921 S 1921 (1924)
Q Consensus 1921 ~ 1921 (1924)
.
T Consensus 339 ~ 339 (406)
T 3sf4_A 339 E 339 (406)
T ss_dssp H
T ss_pred H
Confidence 4
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=6.4e-13 Score=170.69 Aligned_cols=209 Identities=11% Similarity=-0.008 Sum_probs=189.8
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 000176 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADV-EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1738 (1924)
Q Consensus 1660 a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~-dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~v 1738 (1924)
+...++..+...|++..+|..++..+...+++ ++|...|++|++..|.. ...|..+..++...| +.++|.+.
T Consensus 87 al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~g--~~~~A~~~ 159 (474)
T 4abn_A 87 TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-----VEAWNQLGEVYWKKG--DVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcC--CHHHHHHH
Confidence 34456666677899999999999999999999 99999999999887743 358999999999999 56999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHh---------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh---------cCHHH
Q 000176 1739 FQRALQYCDPKKVHLALLGLYERT---------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK---------QQQEG 1800 (1924)
Q Consensus 1739 ferAl~~~~~~~i~~~l~~i~~~~---------gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~---------~~~~~ 1800 (1924)
|++|++..|....|..++.+|... |++++|.+.|++++...|.+..+|+.++..+.. .++++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 999999999989999999999999 999999999999999999999999999998865 26999
Q ss_pred HHHHHHHHHHhCC---CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1801 VQAVVQRALLSLP---RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1801 A~~l~~ral~~~p---~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
|...|++|++..| .. ..+|..+|.+++..|++++|...|+++++..|++..+|..++.++...|+++.|...+.+
T Consensus 240 A~~~~~~al~~~p~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSN--PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999988 44 689999999999999999999999999999999999999999999999998888876654
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=1.4e-12 Score=163.26 Aligned_cols=265 Identities=9% Similarity=0.008 Sum_probs=218.3
Q ss_pred cCCCCchHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHHHHcC
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSS----FVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEKLNIWVAYFNLENEYG 1728 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~----~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~-~ee~ekl~lWiayl~le~~~g 1728 (1924)
.++..++...|++++...|++. .+|..++.++...|++++|...|++++..... .........|..+..++...|
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 4568899999999999999987 58899999999999999999999999975311 112233467888888888899
Q ss_pred CCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCC-----------------hHHHHHHHHHHHHhcC----
Q 000176 1729 NPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQ-----------------NKLADELLYKMIKKFK---- 1780 (1924)
Q Consensus 1729 ~~~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk-----------------~e~A~~~fe~~lk~~~---- 1780 (1924)
+.+.|...|++|++..+. ...|..++.+|...|+ +++|.+.|++++..+.
T Consensus 141 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~ 218 (411)
T 4a1s_A 141 --RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD 218 (411)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 559999999999987421 2789999999999999 9999999999887542
Q ss_pred --CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 000176 1781 --HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-- 1851 (1924)
Q Consensus 1781 --~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~-- 1851 (1924)
....+|..++..+... ++++|...|++++...+.... ..++..+|.+++..|++++|...|++++...|..
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 2345888999999999 999999999999998765321 2488999999999999999999999999987753
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1852 ----TDLWSIYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1852 ----~dlw~~y~~le~k~gd~~~ar~lferal~~----~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
..+|..++.++...|++++|..+|++++.. ...+... ..|..+..+....|+.+.|...+++|++..++
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA-RACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 567899999999999999999999999972 1122222 46777778888899999999999999987654
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=3.9e-12 Score=140.49 Aligned_cols=165 Identities=10% Similarity=0.010 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
..+|+.++.+|.+.|++++|.+.|+++++..|.+..+|..++..+... ++++|...+++++...|.. ..+|..+|.+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS--AEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--HHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999 9999999999999999887 5899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHH
Q 000176 1828 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1907 (1924)
Q Consensus 1828 e~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~ 1907 (1924)
+...++++.|...|++++...|.+.++|..++.++.+.|++++|...|++++. +.|... ..|..........|+.++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~-~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFI-RAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhh-hHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999 777777 688888888899999999
Q ss_pred HHHHHHHHHHH
Q 000176 1908 IEYVKQKAMEY 1918 (1924)
Q Consensus 1908 ~~~v~~rAle~ 1918 (1924)
|...|++|++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999999875
No 51
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=1.4e-12 Score=156.83 Aligned_cols=265 Identities=11% Similarity=0.007 Sum_probs=214.9
Q ss_pred cCCCCchHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHHHHcC
Q 000176 1654 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYG 1728 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s----~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~-ee~ekl~lWiayl~le~~~g 1728 (1924)
.++.+++...|++++...|++ ..+|..++..+...|++++|...+++++...... .......+|..+..+....|
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 466889999999999999998 5788899999999999999999999998753211 12223467778888888889
Q ss_pred CCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCC--------------------hHHHHHHHHHHHHhcC-
Q 000176 1729 NPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQ--------------------NKLADELLYKMIKKFK- 1780 (1924)
Q Consensus 1729 ~~~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk--------------------~e~A~~~fe~~lk~~~- 1780 (1924)
+.+.|...|++|++..+. ..+|..++.+|...|+ +++|.+.|++++..+.
T Consensus 98 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 98 --NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 559999999999987542 1589999999999999 9999999999886531
Q ss_pred -----CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1781 -----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1781 -----~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
....+|..++..+... ++++|...|++++...+.... ..++..+|.++...|++++|...|++++...|.
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 2355788999999999 999999999999987654321 348999999999999999999999999987765
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1851 R------TDLWSIYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1851 ~------~dlw~~y~~le~k~gd~~~ar~lferal~~----~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
. ..+|..++.++...|++++|...|++++.. ..++... ..|..........|+.+.|...+++|++..+
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG-RACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4 567888999999999999999999999972 1111222 4677777888889999999999999998765
Q ss_pred h
Q 000176 1921 S 1921 (1924)
Q Consensus 1921 ~ 1921 (1924)
+
T Consensus 335 ~ 335 (338)
T 3ro2_A 335 E 335 (338)
T ss_dssp -
T ss_pred h
Confidence 4
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=2.8e-11 Score=142.77 Aligned_cols=225 Identities=8% Similarity=-0.119 Sum_probs=182.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHhcC
Q 000176 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE----YGNPPEEAVVKVFQRALQYC 1746 (1924)
Q Consensus 1671 ~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~----~g~~~~e~a~~vferAl~~~ 1746 (1924)
+|+++..|..++..+...+++++|...|+++++.-+ ...|..+..+... .+ +.++|...|++|++..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE-------NSGCFNLGVLYYQGQGVEK--NLKKAASFYAKACDLN 72 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCcCC--CHHHHHHHHHHHHHCC
Confidence 578888999999999999999999999999997211 2466667777777 77 5689999999999875
Q ss_pred CCHHHHHHHHHHHHH----hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c-CHHHHHHHHHHHHHhCCCCCh
Q 000176 1747 DPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQEGVQAVVQRALLSLPRHKH 1817 (1924)
Q Consensus 1747 ~~~~i~~~l~~i~~~----~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~----~-~~~~A~~l~~ral~~~p~~~~ 1817 (1924)
....|..++.+|.. .+++++|...|++++.. ..+..|+.++.++.. . ++++|...|+++++.. +
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~ 145 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----D 145 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----c
Confidence 56888899999999 99999999999999876 478899999999988 7 9999999999999864 3
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchhHH
Q 000176 1818 IKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGLFERAISLSLPPKKMK 1889 (1924)
Q Consensus 1818 ~~~~~~~A~le~~----~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k----~gd~~~ar~lferal~~~~~pk~~k 1889 (1924)
...+..+|.++.. .+++++|...|++++.. .....|..++.++.. .+++++|...|++++. ..+.
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~~~~--- 218 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE--LENG--- 218 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH--TTCH---
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh--CCCH---
Confidence 5788889999888 88999999999999876 356788888999998 8999999999999998 3332
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 000176 1890 FLFKKYLEYEKS----VGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1890 ~lw~~yl~~E~~----~G~~~~~~~v~~rAle~ 1918 (1924)
..+.....+... .++.+.|...|++|++.
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 345555556666 78888899999888764
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=1.4e-11 Score=139.40 Aligned_cols=199 Identities=13% Similarity=0.001 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
...|..+.......| +.+.|...|+++++..|. ..+|..++.+|...|++++|.+.|++++...+....+|..++..
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQ--DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 468888888888999 569999999999999886 48999999999999999999999999999999999999999999
Q ss_pred HHhc--CHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000176 1793 LLKQ--QQEGVQAVVQRALLSLPRH-KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1869 (1924)
Q Consensus 1793 l~~~--~~~~A~~l~~ral~~~p~~-~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~ 1869 (1924)
+... ++++|...|++++. .|.. ....+|..+|..+...|++++|...|++++...|.+..+|..++.++.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9887 89999999999999 3322 236899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPP-KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1870 ~ar~lferal~~~~~p-k~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.|..+|++++. ..| ... ..|.....+....|+.+.+..+++.+++.
T Consensus 165 ~A~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQS--RVEVLQA-DDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHH--HHCSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999998 555 555 45667777888899999999998887653
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=2e-12 Score=151.76 Aligned_cols=217 Identities=12% Similarity=0.011 Sum_probs=184.3
Q ss_pred CchHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1658 PRTPDEFERLVRS----SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1658 p~a~~~ferll~~----~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
.++...|++++.. +|++...|..++..+...|++++|...|+++++..|.. ...|..+..+....+ +.+
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~~--~~~ 94 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIYLTQAG--NFD 94 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHTT--CHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcc--CHH
Confidence 3456677888765 35678999999999999999999999999999887743 358888999989999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1811 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~ 1811 (1924)
.|...|++|++..|.. .+|..++.+|...|++++|...|+++++..+.....+..++ .+... ++++|...|++++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhc
Confidence 9999999999998864 99999999999999999999999999999988876555444 34555 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1812 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1812 ~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~----~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
.|... ..| ..+.+++..++.+.|...|++++...|.. ..+|..++.++.+.|+++.|...|++++. ..|..
T Consensus 174 ~~~~~--~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 248 (275)
T 1xnf_A 174 SDKEQ--WGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 248 (275)
T ss_dssp SCCCS--THH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred CCcch--HHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh
Confidence 98874 233 47777788889999999999998776643 67899999999999999999999999998 55644
No 55
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=2.2e-12 Score=164.98 Aligned_cols=255 Identities=13% Similarity=0.035 Sum_probs=191.1
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFML---SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1733 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~---~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e 1733 (1924)
..+|...|++++..+|+++..|..++..+. ..++.++|.+.+++|++..|.... -..++...+..+....+ ..+
T Consensus 154 y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~--~~~ 230 (472)
T 4g1t_A 154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY-LKVLLALKLHKMREEGE--EEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH-HHHHHHHHHHHCC--------C
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH-HHHHHHHHHHHHHhhhh--HHH
Confidence 668999999999999999999999887754 457788999999999987664321 11122333344444445 348
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----------------
Q 000176 1734 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---------------- 1796 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~---------------- 1796 (1924)
+|.+.|++|+...|.. .+|..++.+|...|++++|.+.|+++++..|.+..+|..++..+...
T Consensus 231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8999999999998874 89999999999999999999999999999999999999988776432
Q ss_pred ----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH-HHcCCH
Q 000176 1797 ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIYLDQE-IRLGDV 1868 (1924)
Q Consensus 1797 ----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d---lw~~y~~le-~k~gd~ 1868 (1924)
.++.|...|++++...|... .+|..+|.++...|++++|...|+++|...|+..+ ++..|+.+. ...|++
T Consensus 311 ~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADEANDNLF--RVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTC--CCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHhhHHHHHHHHHHHhhcCCchh--hhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCH
Confidence 36789999999999998874 78999999999999999999999999999887654 456676654 467899
Q ss_pred HHHHHHHHHHHhcCCCch------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1869 DLIRGLFERAISLSLPPK------------------------KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1869 ~~ar~lferal~~~~~pk------------------------~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
++|...|++++. +.|+ .+ ..|..........|+.+.|...|++|++.-
T Consensus 389 ~~Ai~~y~kal~--i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~-~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 389 DKAIHHFIEGVK--INQKSREKEKMKDKLQKIAKMRLSKNGADS-EALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHCC-CT-THHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999998 4433 22 245555566777889999999999999853
No 56
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.42 E-value=4.7e-15 Score=161.12 Aligned_cols=118 Identities=17% Similarity=0.249 Sum_probs=90.2
Q ss_pred CCCCEEEEEEEEEecCeEEEEE--CCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccccCC
Q 000176 760 HPNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f--~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~~ 837 (1924)
++|+++.|.|++|++||+||++ ++++.||+|.|++++.++.++++.|++||.|.|+|+++|++++|+.||+|....
T Consensus 14 ~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~-- 91 (182)
T 1kl9_A 14 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSP-- 91 (182)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCH--
T ss_pred CCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCc--
Confidence 6899999999999999999999 689999999999999999999999999999999999999999999999998753
Q ss_pred CchhhHHHHHHHHHHHHHhhcccCCCccccccccccCccEEEEEEEEEec-ceeEEEeccCCceeEEEeeee
Q 000176 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVVSFEEHSDVYGFITHHQ 908 (1924)
Q Consensus 838 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~~-~g~~v~l~~~~~v~g~i~~~~ 908 (1924)
.+|......++.|+.++|+|..+.+ +| +.+++ ++.|+++.+.
T Consensus 92 -------------------------~p~~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~--giegl~h~s~ 134 (182)
T 1kl9_A 92 -------------------------EEAIKCEDKFTKSKTVYSILRHVAEVLE--YTKDE--QLESLFQRTA 134 (182)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSHH--HHHHHHHHTH
T ss_pred -------------------------ChHHHHHHhccCCCEEEEEEEEchhhcC--CcccC--ChhheEEeee
Confidence 1244445678889999999999998 99 45543 5667665543
No 57
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.42 E-value=2.5e-13 Score=136.47 Aligned_cols=93 Identities=25% Similarity=0.403 Sum_probs=77.4
Q ss_pred EEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEE
Q 000176 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1512 (1924)
Q Consensus 1433 ~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~ 1512 (1924)
.-|+|+...+||... ..++++|++|.|+|++|.+||+||+|++ ++.||||+|++++.++.++.+.|++||.|+|+
T Consensus 11 ~~~iKq~~~~p~~~~----~~~~~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~ 85 (109)
T 2khj_A 11 SSGLVPRGSHMFNNW----VALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAK 85 (109)
T ss_dssp ----------CHHHH----TTTCCSSSEEEEEEEEECSSCEEEECST-TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEE
T ss_pred ccchhhcccCHHHHH----hhcCCCCCEEEEEEEEEECCeEEEEECC-CCEEEEEHHHcCcccccChhhccCCCCEEEEE
Confidence 457888888887643 6789999999999999999999999976 89999999999999999999999999999999
Q ss_pred EEEEecCCCeeEEecccc
Q 000176 1513 ILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1513 Vl~id~e~~ri~lslK~s 1530 (1924)
|+++|++++||.||+|+.
T Consensus 86 V~~vd~~~~ki~LS~k~~ 103 (109)
T 2khj_A 86 FTGVDRKNRAISLSVRAK 103 (109)
T ss_dssp EEEEETTTTEEEEETTSS
T ss_pred EEEEECCCCEEEEEEeec
Confidence 999999999999999984
No 58
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.3e-11 Score=157.63 Aligned_cols=263 Identities=12% Similarity=0.080 Sum_probs=182.8
Q ss_pred cCCCCchHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---cchhhHHHHHHHHH
Q 000176 1654 EKDAPRTPDEFERLVRS---------SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENEKLNIWVAYF 1721 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~---------~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~---~ee~ekl~lWiayl 1721 (1924)
.++..+|...|++++.. +|.....|.+++..+..+|++++|...++++++..+. ....+...++....
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 45677888899988754 6888999999999999999999999999999974321 11111122333322
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH---HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q 000176 1722 NLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYE---RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1796 (1924)
Q Consensus 1722 ~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~---~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~- 1796 (1924)
.....++....++|.+.|++|++..|.. ..|..++.++. ..++.++|.+.|+++++..|....+|..++..+...
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~ 223 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR 223 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 2223333112488999999999988874 66777766543 446677788888888877777777777766555433
Q ss_pred ----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH---------------
Q 000176 1797 ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI--------------- 1857 (1924)
Q Consensus 1797 ----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~--------------- 1857 (1924)
++++|..+|++++...|.. ..+|..+|.++...|++++|...|++++...|++..+|..
T Consensus 224 ~~~~~~~~a~~~~~~al~~~~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 224 EEGEEEGEGEKLVEEALEKAPGV--TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp ------CHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhH
Confidence 5677778888888777766 4677777888888888888888887777777777665544
Q ss_pred --------------------------------------HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-
Q 000176 1858 --------------------------------------YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY- 1898 (1924)
Q Consensus 1858 --------------------------------------y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~- 1898 (1924)
++.++...|++++|...|++++.....+.....++..|..+
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 34445566888888888888888544444433456666654
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 000176 1899 EKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1899 E~~~G~~~~~~~v~~rAle~ 1918 (1924)
+...|+.+.|...|.+|++.
T Consensus 382 ~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHTSSCHHHHHHHHHHHHHS
T ss_pred HHHCCCHHHHHHHHHHHHhc
Confidence 44568888888888888765
No 59
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.40 E-value=3.1e-13 Score=129.41 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=72.3
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecC-ceeEEeecc-ccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecc
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVS-ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1528 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~-~v~gl~h~s-els~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK 1528 (1924)
.+...++|+++.|+|+ |++||+||+|.+. +++||+|+| ++++.++.++++.| +||.|+++|+++|++++||+||+|
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk 82 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYK 82 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEE
T ss_pred EecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEe
Confidence 4667799999999999 9999999999753 799999999 99999998899999 999999999999999999999999
Q ss_pred cc
Q 000176 1529 SS 1530 (1924)
Q Consensus 1529 ~s 1530 (1924)
+.
T Consensus 83 ~~ 84 (88)
T 1luz_A 83 RM 84 (88)
T ss_dssp EE
T ss_pred ec
Confidence 84
No 60
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=3.8e-12 Score=152.11 Aligned_cols=245 Identities=16% Similarity=0.125 Sum_probs=186.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCc---chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 000176 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR---EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1746 (1924)
Q Consensus 1670 ~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~---ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~ 1746 (1924)
.+|+....|..++..+...|++++|...++++++..... ........|..+..++...+ +.++|...|++|+...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKDAANLLNDALAIR 99 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999999999743211 12234567888888888899 5599999999999873
Q ss_pred ------CC---HHHHHHHHHHHHHhCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHhc-CHHHHHHHHHHH
Q 000176 1747 ------DP---KKVHLALLGLYERTEQNKLADELLYKMIKKF--------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1808 (1924)
Q Consensus 1747 ------~~---~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~--------~~~~~vw~~~a~~l~~~-~~~~A~~l~~ra 1808 (1924)
+. ..+|..++.+|...|++++|...|++++..+ +....+|..++.++... ++++|..+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 2889999999999999999999999999875 34567789999999999 999999999999
Q ss_pred HHhC-----C-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHH------HHHcCC
Q 000176 1809 LLSL-----P-RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK---------RTDLWSIYLDQ------EIRLGD 1867 (1924)
Q Consensus 1809 l~~~-----p-~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk---------~~dlw~~y~~l------e~k~gd 1867 (1924)
+... + ......+|..+|.+++..|++++|...|++++...|. ...+|.....+ ....+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 9872 1 1223578999999999999999999999999975432 22244433333 334566
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1868 ~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
+..+...|++++. ..|..+ ..|..+.......|+.+.|..++++|++.-
T Consensus 260 ~~~a~~~~~~~~~--~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 260 FGEYGGWYKACKV--DSPTVT-TTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp SCCCC-----------CHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCC--CCchHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 6677788888887 666666 688888889999999999999999999864
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=1.8e-11 Score=143.59 Aligned_cols=222 Identities=11% Similarity=-0.014 Sum_probs=188.4
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCh
Q 000176 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQN 1765 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~ 1765 (1924)
..+++++|...|+++++..+. ........|..+.......| +.+.|...|++|++..|. ..+|..++.+|...|++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRAL-TDDERAQLLYERGVLYDSLG--LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHhcccc-cCchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 457899999999999976432 12334578888899989999 559999999999999887 49999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1766 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1844 (1924)
Q Consensus 1766 e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~a 1844 (1924)
++|...|++++...|.+..+|..++..+... ++++|...|+++++..|.... .+ .+..+....|++++|...|+++
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~-~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF--RS-LWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HH-HHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH--HH-HHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999998742 22 2333446679999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1845 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK----MKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1845 L~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~----~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
+...|.....|. .+.++...++.+.|...|++++. ..|.. . ..|..........|+.+.|...|++|++.
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADAT--DNTSLAEHLS-ETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC--SHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhc--cccccccccc-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999998877776 66777788899999999999987 44432 3 57888888899999999999999999753
No 62
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.39 E-value=4.1e-11 Score=143.47 Aligned_cols=216 Identities=10% Similarity=0.043 Sum_probs=180.7
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCcchhhHHHHHHHHHHHHHHcCCCCH
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI--NIREENEKLNIWVAYFNLENEYGNPPE 1732 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i--~~~ee~ekl~lWiayl~le~~~g~~~~ 1732 (1924)
++..++...++. .+|.+...+..++.++...++.++|.+.+++++..- |.. ..+|+.+..+....| +.
T Consensus 48 g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~-----~~~~~~la~~~~~~g--~~ 117 (291)
T 3mkr_A 48 RKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN-----TTFLLMAASIYFYDQ--NP 117 (291)
T ss_dssp TCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC-----HHHHHHHHHHHHHTT--CH
T ss_pred CCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC-----HHHHHHHHHHHHHCC--CH
Confidence 334445544443 255567777888888999999999999999999652 432 347888888888999 56
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHH--HHHHHHhc-CHHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR--RVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~--~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
++|.+.|++ .+....|..++.+|.+.|++++|...|++++...|+.....+. |..++... ++++|..+|++++
T Consensus 118 ~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l 193 (291)
T 3mkr_A 118 DAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193 (291)
T ss_dssp HHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 999999998 3446899999999999999999999999999998877644443 44555555 8999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCchhH
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-IRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~-ar~lferal~~~~~pk~~ 1888 (1924)
...|.+ +.+|...|.++.+.|++++|...|+++|...|++.++|..++.++...|+.+. +..+|++++. +.|+.+
T Consensus 194 ~~~p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 194 DKCSPT--LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp HHSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred HhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 999976 68999999999999999999999999999999999999999999999999865 7899999998 777776
No 63
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.39 E-value=8.6e-13 Score=133.78 Aligned_cols=93 Identities=28% Similarity=0.447 Sum_probs=74.9
Q ss_pred EEEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcc-cccCcccccCCCcEEEE
Q 000176 1433 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKV 1511 (1924)
Q Consensus 1433 ~LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~-~~~~~~~~~~~Gd~Vk~ 1511 (1924)
.-|+|+...+||.. ...++++|+++.|+|++|.+||+||+|++ ++.||||+|++++. ++.++.+.|++||.|+|
T Consensus 10 ~~~~k~~~~~p~~~----~~~~~~~G~~~~G~V~~v~~~G~FV~l~~-~~~Glvhisel~~~~~~~~~~~~~~vGd~V~v 84 (115)
T 2khi_A 10 HSSGLVPRGSHWVA----IAKRYPEGTKLTGRVTNLTDYGCFVEIEE-GVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEV 84 (115)
T ss_dssp -----------CCC----SSCSSCSSCEEEEEEEEEETTEEEEECST-TCEEEEETTSSSCSSTTCSSTTTCCTTCEEEE
T ss_pred ccchhhcccCCHHH----HhhcCCCCCEEEEEEEEEECCEEEEEECC-CCEEEEEHHHCCccccccCcccEECCCCEEEE
Confidence 34788888877654 25689999999999999999999999976 79999999999984 67788899999999999
Q ss_pred EEEEEecCCCeeEEecccc
Q 000176 1512 KILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1512 ~Vl~id~e~~ri~lslK~s 1530 (1924)
+|+++|.+++||.||+|+.
T Consensus 85 kV~~vd~~~~rI~lslk~~ 103 (115)
T 2khi_A 85 MVLDIDEERRRISLGLKQC 103 (115)
T ss_dssp EEEEEETTTTEEEECCCCC
T ss_pred EEEEEECCCCEEEEEEEec
Confidence 9999999999999999985
No 64
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.38 E-value=1.6e-12 Score=122.77 Aligned_cols=72 Identities=24% Similarity=0.461 Sum_probs=67.6
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
++++|+++.|+|+++.+||+||+|++ +++||||+|++++.++ +.|++||.|+|+|+++|++++||+||+|+.
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~ 73 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNE-QVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPL 73 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEET-TEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSC
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECC-CCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 57899999999999999999999987 8999999999998765 679999999999999999999999999985
No 65
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.38 E-value=5.5e-14 Score=152.14 Aligned_cols=104 Identities=18% Similarity=0.258 Sum_probs=88.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccc
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1443 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~--~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~ 1443 (1924)
++|+++.|+|++++++|+||+|. ++++|+||+|+|+|.++.++.+.|++||.|.|+|+++|+++++|.||+|....+|
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~~ 93 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSED 93 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHHH
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcCh
Confidence 48999999999999999999994 7899999999999999999999999999999999999999999999999988877
Q ss_pred cchhccccccccCCCcEEEEEEEEee-cceE
Q 000176 1444 ASQSEINNLSNLHVGDIVIGQIKRVE-SYGL 1473 (1924)
Q Consensus 1444 ~~~~~~~~~~~l~~G~~v~G~V~~v~-~~Gv 1473 (1924)
|.. ....+++|+++.|+|+++. +||+
T Consensus 94 ~~~----~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 94 IIK----CEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHH----HHHhccCCCcceEEEEEchhhcCC
Confidence 653 3567899999999999998 7887
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=3.3e-11 Score=138.06 Aligned_cols=212 Identities=10% Similarity=0.024 Sum_probs=170.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000176 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1749 (1924)
Q Consensus 1671 ~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1749 (1924)
.|.++..|+..+..+...+++++|...|+++++..|... ...|..+.......+ +.++|...|++|++..|..
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD----SVTAYNCGVCADNIK--KYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTCSHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHhh--cHHHHHHHHHHHHHhCcchH
Confidence 456789999999999999999999999999998776211 235666777778888 5599999999999999986
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-------KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFI 1821 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~-------~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~ 1821 (1924)
.+|..++.+|...|++++|.+.|+++++.+|.++ .+|..++..+... ++++|...|+++++..|...+..+|
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 8999999999999999999999999999999988 6699999999999 9999999999999998871126899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
..+|.+++.. ++.+++++....+.....+. .......+.+++|...|++++. +.|+.. .++......
T Consensus 157 ~~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~--l~p~~~-~~~~~l~~i 223 (228)
T 4i17_A 157 YSLGVLFYNN-----GADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT--LSPNRT-EIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HCTTCH-HHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh--cCCCCH-HHHHHHHHH
Confidence 9999998754 45567777776666544332 2234456678899999999998 667666 455544443
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=8e-12 Score=160.47 Aligned_cols=211 Identities=9% Similarity=-0.075 Sum_probs=183.8
Q ss_pred CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHH
Q 000176 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE-EAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKL 1767 (1924)
Q Consensus 1690 e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~-e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~ 1767 (1924)
.+++|...+++++...+. ...+|..+...+...+ +. ++|.+.|++|++..|. ...|..++.+|...|++++
T Consensus 83 ~~~~al~~l~~~~~~~~~-----~a~~~~~lg~~~~~~g--~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV-----EAQALMLKGKALNVTP--DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHTSSS--SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccCch-----hHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 356666777776654442 2458888888888888 67 9999999999999987 4999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc------
Q 000176 1768 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ----------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN------ 1831 (1924)
Q Consensus 1768 A~~~fe~~lk~~~~~~~vw~~~a~~l~~~----------~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~------ 1831 (1924)
|.+.|++++...|. ..+|..++..+... ++++|...|++|++..|.+ ..+|..+|.++...
T Consensus 156 A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 156 AHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--GRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhhcc
Confidence 99999999999887 79999999988762 6899999999999999987 58999999999998
Q ss_pred --CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000176 1832 --GVADRGRSMFEGILSEYP---KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1832 --g~~e~Ar~lfe~aL~~~P---k~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~ 1906 (1924)
|++++|...|+++++..| .+..+|..++.++...|++++|...|++++. +.|... ..|..+.......|+.+
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~-~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWP-EPQQREQQLLEFLSRLT 309 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999 777777 57888888888788877
Q ss_pred HHHHHHH
Q 000176 1907 RIEYVKQ 1913 (1924)
Q Consensus 1907 ~~~~v~~ 1913 (1924)
++...+.
T Consensus 310 eAi~~~~ 316 (474)
T 4abn_A 310 SLLESKG 316 (474)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 7765543
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=8.6e-12 Score=156.17 Aligned_cols=244 Identities=9% Similarity=-0.071 Sum_probs=199.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC------
Q 000176 1673 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------ 1746 (1924)
Q Consensus 1673 ~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~------ 1746 (1924)
.....+...+..+...|++++|+..|+++++..|... .....+|..+...+...| +.+.|...|++|++..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-RTLSAIYSQLGNAYFYLG--DYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-hHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHccCc
Confidence 3455667788889999999999999999998765421 122357888888888889 5599999999999873
Q ss_pred CC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHhc-C-----------------HHHH
Q 000176 1747 DP-KKVHLALLGLYERTEQNKLADELLYKMIKKF------KHSCKVWLRRVQRLLKQ-Q-----------------QEGV 1801 (1924)
Q Consensus 1747 ~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~------~~~~~vw~~~a~~l~~~-~-----------------~~~A 1801 (1924)
+. ..+|..++.+|...|++++|...|++++..+ +....+|..++..+... + +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 21 2889999999999999999999999999874 34466899999999988 8 9999
Q ss_pred HHHHHHHHHhCCCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHH
Q 000176 1802 QAVVQRALLSLPRH----KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD------LWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1802 ~~l~~ral~~~p~~----~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d------lw~~y~~le~k~gd~~~a 1871 (1924)
...|++++...+.. ....+|..+|.+++..|++++|...|++++...|...+ +|..++.++...|++++|
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 99999998865321 12468999999999999999999999999998765333 789999999999999999
Q ss_pred HHHHHHHHhcCCCch-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1872 RGLFERAISLSLPPK-----KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1872 r~lferal~~~~~pk-----~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
...|++++. +.++ ..-..|..+..+....|+.+.|...+++|++....
T Consensus 283 ~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 283 AEHYKRTLA--LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999998 3322 11246777778888899999999999999987654
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=1.3e-11 Score=165.14 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
...|..+.+++...| +.++|.+.|++|++..|.. ..|..++.+|.+.|++++|.+.|+++++..|+...+|++++..
T Consensus 9 a~al~nLG~~~~~~G--~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQG--NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456777778888888 4588888888888888774 8888888888888888888888888888888888888888888
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~a 1871 (1924)
+... ++++|.+.|++|++..|.+ ..+|..+|.++...|++++|...|+++|+..|++.++|..++.++...|+++.|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~--~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAF--ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888 8888888888888888876 578888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 000176 1872 RGLFERAIS 1880 (1924)
Q Consensus 1872 r~lferal~ 1880 (1924)
...|++++.
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888887
No 70
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.36 E-value=1.3e-10 Score=137.09 Aligned_cols=212 Identities=12% Similarity=-0.051 Sum_probs=188.0
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH----
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE---- 1726 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~----~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~---- 1726 (1924)
++..++...|++++. |++...|..++.++.. .+++++|...|++|++.-. ...|..+..+...
T Consensus 20 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 20 KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-------SNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHhCCCCc
Confidence 457788899999987 8889999999999999 9999999999999997531 3467777777777
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c-C
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-Q 1797 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~----~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~----~-~ 1797 (1924)
.+ +.++|...|++|++.. ....|..++.+|.. .+++++|...|++++... ....|..++..+.. . +
T Consensus 91 ~~--~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~ 165 (273)
T 1ouv_A 91 SQ--NTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD 165 (273)
T ss_dssp CC--CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred cc--CHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC
Confidence 77 5699999999999874 67899999999999 999999999999999864 78999999999998 7 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVD 1869 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~----~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k----~gd~~ 1869 (1924)
+++|...|+++++.. +...+..+|.++.. .+++++|...|++++...| ...+..++.++.. .++++
T Consensus 166 ~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 166 LKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCST
T ss_pred HHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHH
Confidence 999999999999873 36899999999999 9999999999999999866 7889999999998 99999
Q ss_pred HHHHHHHHHHhcCCCchhH
Q 000176 1870 LIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~ 1888 (1924)
+|...|++++. +.|..+
T Consensus 240 ~A~~~~~~a~~--~~~~~a 256 (273)
T 1ouv_A 240 QAIENFKKGCK--LGAKGA 256 (273)
T ss_dssp THHHHHHHHHH--HTCHHH
T ss_pred HHHHHHHHHHH--cCCHHH
Confidence 99999999999 556555
No 71
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.35 E-value=1.1e-13 Score=149.85 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=84.0
Q ss_pred CCCEEEEEEEEEecCeEEEEE--CCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccccCCC
Q 000176 761 PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838 (1924)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f--~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~~~ 838 (1924)
+|+++.|.|++|++||+||++ ++++.||+|.|++++.++.++.+.|++||.|.|+|+++|++++|+.||+|....
T Consensus 15 ~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~--- 91 (175)
T 2a19_A 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSS--- 91 (175)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCH---
T ss_pred CCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCc---
Confidence 899999999999999999999 589999999999999999999999999999999999999999999999998753
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCccccccccccCccEEEEEEEEEe-ccee
Q 000176 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN-DFGV 890 (1924)
Q Consensus 839 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~-~~g~ 890 (1924)
.+|......+++|+.++|+|..+. ++|+
T Consensus 92 ------------------------~~~~~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 92 ------------------------EDIIKCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------------------ChHHHHHHhccCCCcceEEEEEchhhcCC
Confidence 124444567888999999988888 5676
No 72
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.35 E-value=3.4e-11 Score=149.69 Aligned_cols=245 Identities=10% Similarity=-0.048 Sum_probs=201.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC---C
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD---P 1748 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~---~ 1748 (1924)
+.....|...+..+...|++++|...|+++++..|... .....+|..+...+...| +.+.|...|++|+.... .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-KTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhccc
Confidence 45677899999999999999999999999998765422 122357888888888899 55999999999987632 1
Q ss_pred ----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-C--------------------
Q 000176 1749 ----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-Q-------------------- 1797 (1924)
Q Consensus 1749 ----~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~-------------------- 1797 (1924)
..+|..++.+|...|++++|...|++++..++.. ..+|..++..+... +
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 2789999999999999999999999999876422 55889999999988 8
Q ss_pred HHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCC
Q 000176 1798 QEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD------LWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d------lw~~y~~le~k~gd 1867 (1924)
+++|...|++++...+... ...++..+|.+++..|++++|...|++++...|+..+ +|..++.++...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999999988643221 2468999999999999999999999999988765433 78999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchh-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1868 VDLIRGLFERAISLSLPPKK-----MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1868 ~~~ar~lferal~~~~~pk~-----~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
+++|...|++++. +.+.. .-..|..........|+.+.|...+++|++....
T Consensus 243 ~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 243 FETASEYYKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 9999999999997 22221 1246777777888899999999999999987554
No 73
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.35 E-value=2.3e-12 Score=133.25 Aligned_cols=77 Identities=32% Similarity=0.702 Sum_probs=73.6
Q ss_pred cccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1453 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1453 ~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.++++|++|.|+|++|.+||+||+|.+ ++.||||+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+|+.
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~-~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~ 79 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDE-ETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRAT 79 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEET-TEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECC-CcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeec
Confidence 478999999999999999999999986 89999999999999999999999999999999999999999999999985
No 74
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.34 E-value=4.1e-12 Score=128.77 Aligned_cols=95 Identities=25% Similarity=0.298 Sum_probs=76.6
Q ss_pred EEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCc-ccccCcccCCCCCCEEEEEE
Q 000176 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-GQRADLSKTYYVGQSVRSNI 816 (1924)
Q Consensus 738 ~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~-~~~~~~~~~f~~Gq~V~~~V 816 (1924)
.-|+|+...++|..+. .++++|+++.|.|++++++|+||++.+++.||+|.|++++ .+..++.+.|++||.|+|+|
T Consensus 10 ~~~~k~~~~~p~~~~~---~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV 86 (115)
T 2khi_A 10 HSSGLVPRGSHWVAIA---KRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMV 86 (115)
T ss_dssp -----------CCCSS---CSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEE
T ss_pred ccchhhcccCCHHHHh---hcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEE
Confidence 3467888888887754 4588999999999999999999999999999999999997 46778889999999999999
Q ss_pred EEeeCCCCeEEEeeccccc
Q 000176 817 LDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 817 ~~id~~~~r~~lSlk~~~~ 835 (1924)
+++|++++|+.||+|+...
T Consensus 87 ~~vd~~~~rI~lslk~~~~ 105 (115)
T 2khi_A 87 LDIDEERRRISLGLKQCKA 105 (115)
T ss_dssp EEEETTTTEEEECCCCCCS
T ss_pred EEEECCCCEEEEEEEecCc
Confidence 9999999999999998643
No 75
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.34 E-value=8.2e-14 Score=163.22 Aligned_cols=108 Identities=16% Similarity=0.218 Sum_probs=100.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~--~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
+++|+++.|+|++++++|+||+|+ ++++|+||+++++|.++.++.+.|++||.|.|+|+++|+++++|.||+|....+
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~~ 90 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSPE 90 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCHH
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecccC
Confidence 569999999999999999999998 689999999999999999999999999999999999999999999999998877
Q ss_pred ccchhccccccccCCCcEEEEEEEEeec-ceEEEE
Q 000176 1443 TASQSEINNLSNLHVGDIVIGQIKRVES-YGLFIT 1476 (1924)
Q Consensus 1443 ~~~~~~~~~~~~l~~G~~v~G~V~~v~~-~GvFV~ 1476 (1924)
||.. ....+++|+++.|+|+++.+ ||+|++
T Consensus 91 p~~~----~~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 91 EAIK----CEDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred hHHH----HHHHccCCCeeEEEEEEcccccCCccC
Confidence 7654 35688999999999999998 699975
No 76
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=2.5e-11 Score=145.88 Aligned_cols=242 Identities=9% Similarity=-0.051 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC------
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------ 1748 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~------ 1748 (1924)
...|...+..+...|++++|...|+++++..|.. ......+|..+.......| +.+.|...|++|++....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED-LKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhcccccHH
Confidence 4567788889999999999999999999875542 2222467778888888889 559999999999877421
Q ss_pred -HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-C--------------------HHH
Q 000176 1749 -KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-Q--------------------QEG 1800 (1924)
Q Consensus 1749 -~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~--------------------~~~ 1800 (1924)
..+|..++.+|...|++++|.+.|++++...+.. ..+|..++..+... + +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 2789999999999999999999999999876432 44888999999888 8 999
Q ss_pred HHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Q 000176 1801 VQAVVQRALLSLPRH----KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------TDLWSIYLDQEIRLGDVDL 1870 (1924)
Q Consensus 1801 A~~l~~ral~~~p~~----~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~------~dlw~~y~~le~k~gd~~~ 1870 (1924)
|...|++++...+.. ....++..+|.+++..|++++|...|++++...|.. ..+|..++.++...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999998764321 124688999999999999999999999999876542 2378999999999999999
Q ss_pred HHHHHHHHHhcCCCchh-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1871 IRGLFERAISLSLPPKK-----MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1871 ar~lferal~~~~~pk~-----~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
|..+|++++. +.+.. .-..|..........|+.+.|...+++|++....
T Consensus 242 A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 242 ASEYYKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 9999999997 22221 1246777777888899999999999999987654
No 77
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.33 E-value=2e-12 Score=132.16 Aligned_cols=110 Identities=29% Similarity=0.411 Sum_probs=99.5
Q ss_pred EEechhhhccCCCcccccCCcEEEEEEeeeeceeEEEEecCCcceeeccCCCCCC-----CCCCccCCCcEEEEEEEEEc
Q 000176 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSID 288 (1924)
Q Consensus 214 LSl~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~-----~~~~~l~~G~~~~~~v~~~~ 288 (1924)
+||+|+.+|+.++.+++.+|+++.|.|++|+|+|+.+++|..+..||++.++... ..+..+++||.+.|.|.+++
T Consensus 3 ~sl~P~~vn~~~~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 82 (119)
T 1wi5_A 3 SGSSGKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVK 82 (119)
T ss_dssp CCCCCSCSSCCCCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECC
T ss_pred cccCHHHhhccccHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEe
Confidence 6899999999999999999999999999999999999999777889998876410 11237999999999999999
Q ss_pred CCCcEEEEccCccccccccccCcccccccccCCCc
Q 000176 289 RTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 323 (1924)
Q Consensus 289 ~~~~~v~ls~~~~~~~~~~~~~~~~~~~~~l~pG~ 323 (1924)
..++.+.||+.+..+.++.+++.+.+|+++|+||.
T Consensus 83 ~~~~~i~Lslk~~~l~~~~~~~~~~~~~~~l~p~~ 117 (119)
T 1wi5_A 83 GNGGVVSLSVGHSEVSTAIATEQQSWNLNNLSGPS 117 (119)
T ss_dssp TTSCEEEEECCCCCSCCCCCCSSCCCCCCCCCCCC
T ss_pred CCCCEEEEEEchhhcccceeeccCccChhhccCCC
Confidence 88899999999999999999998999999999995
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=2.8e-11 Score=161.86 Aligned_cols=167 Identities=12% Similarity=0.023 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.+|.+.|++++|.+.|+++++..|+...+|++++..+.+. ++++|.+.|++|++..|.+ ..+|..+|.++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999 9999999999999999987 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
...|++++|...|+++++..|++.++|..++.++...|++++|...|++|+. +.|+.. ..|..+.......|+.+++
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~-~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFP-DAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCH-HHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHHhhhhhHHHhcccHHHH
Confidence 9999999999999999999999999999999999999999999999999999 788888 6888888999999999999
Q ss_pred HHHHHHHHHHHHh
Q 000176 1909 EYVKQKAMEYVES 1921 (1924)
Q Consensus 1909 ~~v~~rAle~v~~ 1921 (1924)
...+++|++....
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 9999999998765
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=6.5e-11 Score=135.59 Aligned_cols=192 Identities=10% Similarity=0.026 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD--PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~--~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
..|..........+ +.++|...|++|++..| ....|..++.+|...|++++|...|+++++..|....+|..++..
T Consensus 8 ~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAK--NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 46888888888889 45999999999999985 458888899999999999999999999999999999999999999
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHI-----KFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIR 1864 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~-----~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk--~~dlw~~y~~le~k 1864 (1924)
+... ++++|...|+++++..|.+... .+|...|.+++..|++++|...|++++...|+ ...+|..++.++..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999 9999999999999999987433 67999999999999999999999999999999 88999999999865
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1865 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
. ++.+++++.. +.+.... .+.. ..+...+.++.|...+++|++.
T Consensus 166 ~-----~~~~~~~a~~--~~~~~~~-~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 166 N-----GADVLRKATP--LASSNKE-KYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp H-----HHHHHHHHGG--GTTTCHH-HHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHh--cccCCHH-HHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 4 4566777776 3333332 2222 2234456688899999999875
No 80
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.30 E-value=4e-12 Score=127.74 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=78.5
Q ss_pred EEEecccccchhccCCCCcCccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEE
Q 000176 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817 (1924)
Q Consensus 738 ~ls~K~sl~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~ 817 (1924)
.-|+|+...++|+.+. .++++|+++.|.|++++++|+||++.+++.||+|.+++++.+..++.+.|++||.|.|+|+
T Consensus 11 ~~~iKq~~~~p~~~~~---~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~ 87 (109)
T 2khj_A 11 SSGLVPRGSHMFNNWV---ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFT 87 (109)
T ss_dssp ----------CHHHHT---TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEE
T ss_pred ccchhhcccCHHHHHh---hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEE
Confidence 4467888889988754 4588999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCeEEEeecccc
Q 000176 818 DVNSETGRITLSLKQSC 834 (1924)
Q Consensus 818 ~id~~~~r~~lSlk~~~ 834 (1924)
++|++++++.||++...
T Consensus 88 ~vd~~~~ki~LS~k~~~ 104 (109)
T 2khj_A 88 GVDRKNRAISLSVRAKD 104 (109)
T ss_dssp EEETTTTEEEEETTSSS
T ss_pred EEECCCCEEEEEEeecC
Confidence 99999999999999764
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=1.1e-10 Score=127.56 Aligned_cols=163 Identities=13% Similarity=0.017 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
...|..+.......+ +.+.|...|+++++..|. ..+|..++.+|...|++++|...|+++++..+....+|..++..
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAG--RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 456666777777777 458888888888877665 47788888888888888888888888888888888888888888
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~a 1871 (1924)
+... ++++|...|++++...|.. ..+|..+|..+...|++++|...|++++...|.+..+|..++.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPIN--FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHh--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 8877 8888888888888887765 477888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 000176 1872 RGLFERAIS 1880 (1924)
Q Consensus 1872 r~lferal~ 1880 (1924)
...|++++.
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888876
No 82
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=3.9e-12 Score=129.24 Aligned_cols=80 Identities=30% Similarity=0.404 Sum_probs=72.9
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCC--CeeEEeccc
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK--RRISLGMKS 1529 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~--~ri~lslK~ 1529 (1924)
...+++|++|.|+|++|.+||+||+|.+.+++||||+|++++.++.++.+.|++||.|+|+|+++|+++ +||.||+|+
T Consensus 17 ~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~ 96 (119)
T 2cqo_A 17 ENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKV 96 (119)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTT
T ss_pred hcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEee
Confidence 567899999999999999999999995434799999999999999999999999999999999999864 799999998
Q ss_pred cc
Q 000176 1530 SY 1531 (1924)
Q Consensus 1530 s~ 1531 (1924)
..
T Consensus 97 ~~ 98 (119)
T 2cqo_A 97 VN 98 (119)
T ss_dssp BC
T ss_pred cc
Confidence 64
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=1.5e-10 Score=126.23 Aligned_cols=166 Identities=15% Similarity=0.037 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++..+...|++++|...|++++..++....+|..++..+... ++++|...|+++++..|.. ..+|..+|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN--VKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999 9999999999999998876 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
+..|++++|...|++++...|.+..+|..++..+...|++++|..+|++++. ..|... ..|..+.......|+.+.|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG--LRPNEG-KVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh--cCccch-HHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999 566666 6888888888999999999
Q ss_pred HHHHHHHHHHHH
Q 000176 1909 EYVKQKAMEYVE 1920 (1924)
Q Consensus 1909 ~~v~~rAle~v~ 1920 (1924)
...+++|++.-.
T Consensus 164 ~~~~~~~~~~~~ 175 (186)
T 3as5_A 164 LPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC
Confidence 999999998754
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=2.3e-10 Score=142.30 Aligned_cols=254 Identities=10% Similarity=-0.026 Sum_probs=196.8
Q ss_pred HHHHHHHHhCCCCHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHHHHcCCCCHHH
Q 000176 1662 DEFERLVRSSPNSSFVWIK------YMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYGNPPEEA 1734 (1924)
Q Consensus 1662 ~~ferll~~~P~s~~~W~~------y~~~~~~~~e~dkAr~v~eraL~~i~~~-ee~ekl~lWiayl~le~~~g~~~~e~ 1734 (1924)
..++++ ...|.+...++. .+.++...|++++|...|++|++..... ...+...+|..+..++...| +.+.
T Consensus 85 ~~~~~i-~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~--~~~~ 161 (383)
T 3ulq_A 85 DLLLEI-DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK--QTYF 161 (383)
T ss_dssp HHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHH
T ss_pred hHHHHH-HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--CHHH
Confidence 444443 334444444444 7777889999999999999999753221 13334567888888888889 5599
Q ss_pred HHHHHHHHHhcCCC--------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-CHH
Q 000176 1735 VVKVFQRALQYCDP--------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQE 1799 (1924)
Q Consensus 1735 a~~vferAl~~~~~--------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~~~ 1799 (1924)
|...|++|++..+. -..|..++.+|...|++++|.+.|++++..++.. ..+|..+|..+... +++
T Consensus 162 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 241 (383)
T 3ulq_A 162 SMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYE 241 (383)
T ss_dssp HHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHH
Confidence 99999999987432 1689999999999999999999999999876422 35899999999999 999
Q ss_pred HHHHHHHHHHHhCC---C-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC---
Q 000176 1800 GVQAVVQRALLSLP---R-HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK-----RTDLWSIYLDQEIRLGD--- 1867 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p---~-~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk-----~~dlw~~y~~le~k~gd--- 1867 (1924)
+|...|++|+...+ . .....++..+|.+++..|++++|...|++++...++ ....+..++.++...|+
T Consensus 242 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (383)
T 3ulq_A 242 DAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA 321 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999421 1 233689999999999999999999999999987532 22335567777888888
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000176 1868 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922 (1924)
Q Consensus 1868 ~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~ 1922 (1924)
+++|..+|+++ ...+... .++.....+....|+.+.|...+++|++.-++.
T Consensus 322 ~~~al~~~~~~---~~~~~~~-~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 322 IQGFFDFLESK---MLYADLE-DFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHHHT---TCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHC---cCHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 77788888875 2444444 577778888899999999999999999987653
No 85
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=8.8e-12 Score=123.60 Aligned_cols=78 Identities=33% Similarity=0.583 Sum_probs=70.9
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecC--ceeEEeecccc-CcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENT--NLVGLCHVSEL-SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~--~v~gl~h~sel-s~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
...++++|+++.|+|++|.+||+||+|.+. +++||||+|++ ++.++.++.+.|++||.|+|+|+++|+ +||+||+
T Consensus 6 ~~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSl 83 (103)
T 2eqs_A 6 SGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSM 83 (103)
T ss_dssp CCSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEES
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEE
Confidence 356789999999999999999999999752 79999999999 677788899999999999999999996 6999999
Q ss_pred ccc
Q 000176 1528 KSS 1530 (1924)
Q Consensus 1528 K~s 1530 (1924)
|..
T Consensus 84 k~~ 86 (103)
T 2eqs_A 84 KDV 86 (103)
T ss_dssp TTB
T ss_pred eec
Confidence 984
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=1.2e-10 Score=136.68 Aligned_cols=179 Identities=9% Similarity=0.023 Sum_probs=121.9
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000176 1669 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748 (1924)
Q Consensus 1669 ~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~ 1748 (1924)
..+|++...|+..+..+++.|++++|...|+++++..|.... ....|..+...+...+ +.+.|...|+++++..|.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~a~~~lg~~~~~~~--~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW--AADAQFYLARAYYQNK--EYLLAASEYERFIQIYQI 84 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT--HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc--hHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHCCC
Confidence 346889999999999999999999999999999988775421 1246667777777888 459999999999998764
Q ss_pred ----HHHHHHHHHHHHH--------hCChHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHhc-CH
Q 000176 1749 ----KKVHLALLGLYER--------TEQNKLADELLYKMIKKFKHSCKVW-----------------LRRVQRLLKQ-QQ 1798 (1924)
Q Consensus 1749 ----~~i~~~l~~i~~~--------~gk~e~A~~~fe~~lk~~~~~~~vw-----------------~~~a~~l~~~-~~ 1798 (1924)
...|+.++.+|.. .|++++|...|++++..+|.+..+| +.++.++... ++
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY 164 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 2788888888888 8899999999999999888776666 3344444444 44
Q ss_pred HHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCC
Q 000176 1799 EGVQAVVQRALLSLPRHK-HIKFISQTAILEFKN----------GVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~----------g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
++|...|+++++..|... ...+|..+|..++.. |++++|...|++++..+|++
T Consensus 165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 444444444444444432 123444444444433 44444444444444444444
No 87
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.22 E-value=1.2e-11 Score=118.41 Aligned_cols=78 Identities=18% Similarity=0.318 Sum_probs=71.9
Q ss_pred CcCccCCCCEEEEEEEEEecCeEEEEEC--CCeEEEecCC-ccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeec
Q 000176 755 DASHIHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRS-KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1924)
Q Consensus 755 ~~~~~~~G~~~~G~V~~i~~~G~fV~f~--~~l~Glv~~s-~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk 831 (1924)
.|...++|+++.|+|+ |++||+||++. +++.||+|.| ++++++..++++.| +||.|+|+|+++|++++|+.||+|
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk 82 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYK 82 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEE
T ss_pred EecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEe
Confidence 3566788999999999 99999999996 4899999999 99998888888889 999999999999999999999999
Q ss_pred ccc
Q 000176 832 QSC 834 (1924)
Q Consensus 832 ~~~ 834 (1924)
...
T Consensus 83 ~~~ 85 (88)
T 1luz_A 83 RMC 85 (88)
T ss_dssp EEC
T ss_pred ecC
Confidence 764
No 88
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.22 E-value=2.2e-11 Score=125.99 Aligned_cols=82 Identities=17% Similarity=0.410 Sum_probs=77.3
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
.++++|+++.|+|++++++|+||+|+.+++|+||+++++|.|+.++.+.|++||.|.|+|+++|+++++|.||+|+...+
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~~ 82 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAA 82 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHHHS
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecccC
Confidence 35889999999999999999999999899999999999999999999999999999999999999999999999998776
Q ss_pred cc
Q 000176 1443 TA 1444 (1924)
Q Consensus 1443 ~~ 1444 (1924)
|+
T Consensus 83 p~ 84 (130)
T 2k4k_A 83 PE 84 (130)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.21 E-value=1.1e-10 Score=156.55 Aligned_cols=185 Identities=6% Similarity=-0.098 Sum_probs=163.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000176 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERAL--------QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1741 (1924)
Q Consensus 1670 ~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL--------~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vfer 1741 (1924)
.+|++..+++..+ ...+++++|.+.+++++ +..|... ..|..+...+...| +.++|.+.|++
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~g--~~~~A~~~~~~ 458 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESV-----ELPLMEVRALLDLG--DVAKATRKLDD 458 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCS-----HHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccch-----hHHHHHHHHHHhcC--CHHHHHHHHHH
Confidence 4677776666544 77899999999999999 5555432 47888888888999 55999999999
Q ss_pred HHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH
Q 000176 1742 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1819 (1924)
Q Consensus 1742 Al~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~ 1819 (1924)
|++..|.. .+|+.++.+|...|++++|.+.|+++++..|.+..+|+.++..+.+. ++++ .+.|++|++..|.+ ..
T Consensus 459 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~--~~ 535 (681)
T 2pzi_A 459 LAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV--IS 535 (681)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC--HH
T ss_pred HhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch--HH
Confidence 99998875 99999999999999999999999999999999999999999999999 9999 99999999999987 58
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd 1867 (1924)
+|..+|.++...|++++|...|+++++..|.+..+|..++..++..++
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999998877655
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=1.9e-10 Score=134.82 Aligned_cols=221 Identities=11% Similarity=0.004 Sum_probs=158.2
Q ss_pred CCCchHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCcchhhHHHHHHHHHH
Q 000176 1656 DAPRTPDEFERLVR--------SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI-----NIREENEKLNIWVAYFN 1722 (1924)
Q Consensus 1656 ~~p~a~~~ferll~--------~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i-----~~~ee~ekl~lWiayl~ 1722 (1924)
+.++|...|++++. .+|....+|..++.++...|++++|...+++++... +. .......|..+..
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~l~~ 93 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD--HPAVAATLNNLAV 93 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc--chHHHHHHHHHHH
Confidence 35566666666654 236788999999999999999999999999999764 21 1223467777778
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHh--------cCCCHHH
Q 000176 1723 LENEYGNPPEEAVVKVFQRALQYC--------DP-KKVHLALLGLYERTEQNKLADELLYKMIKK--------FKHSCKV 1785 (1924)
Q Consensus 1723 le~~~g~~~~e~a~~vferAl~~~--------~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~--------~~~~~~v 1785 (1924)
+....+ +.++|.+.|++|+... +. ...|..++.+|...|++++|.+.|++++.. .+....+
T Consensus 94 ~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 94 LYGKRG--KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHhc--cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 877888 5599999999999873 22 278888899999999999999999998887 3344667
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhCCC-------CChHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCC
Q 000176 1786 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-------HKHIKFISQTAILEFKNGV------ADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1786 w~~~a~~l~~~-~~~~A~~l~~ral~~~p~-------~~~~~~~~~~A~le~~~g~------~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
|..++..+... ++++|..+|++++...+. .....+|...+.++...+. +..+...++.+....|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 88888888888 888999888888876321 1112567777766664443 344444444444444555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1852 TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1852 ~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..+|..++.++...|++++|..+|++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66788888888888888888888888886
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=1.4e-10 Score=155.77 Aligned_cols=167 Identities=8% Similarity=-0.070 Sum_probs=151.9
Q ss_pred HHcCCCCHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 000176 1725 NEYGNPPEEAVVKVFQRAL--------QYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1795 (1924)
Q Consensus 1725 ~~~g~~~~e~a~~vferAl--------~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~ 1795 (1924)
...+ +.++|.+.|++|+ +..|.. ..|+.++.+|.+.|++++|.+.|+++++..|++..+|+.++..+..
T Consensus 402 ~~~~--~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLS--QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTC--CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cccc--CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 5566 5699999999999 766664 9999999999999999999999999999999999999999999999
Q ss_pred c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1796 Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1796 ~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
. ++++|...|++|++..|.+. .+|..+|.++++.|++++ ...|+++++.+|++..+|..++.++.+.|+++.|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~--~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGEL--APKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9 99999999999999999884 899999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHH
Q 000176 1875 FERAISLSLPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1875 feral~~~~~pk~~k~lw~~yl~~E 1899 (1924)
|++|+. +.|... ..|.......
T Consensus 557 ~~~al~--l~P~~~-~a~~~~~~~~ 578 (681)
T 2pzi_A 557 LDEVPP--TSRHFT-TARLTSAVTL 578 (681)
T ss_dssp HHTSCT--TSTTHH-HHHHHHHHHT
T ss_pred HHhhcc--cCcccH-HHHHHHHHHH
Confidence 999998 778776 4555444443
No 92
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.20 E-value=1.5e-12 Score=150.85 Aligned_cols=108 Identities=16% Similarity=0.266 Sum_probs=98.4
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~--~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
.++|+++.|+|+++.++|+||+|+ ++++|+||+|+++|.++.++.+.|++||.|.++|+++|+++++|.||+|....+
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~~ 88 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQ 88 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCcc
Confidence 358999999999999999999998 689999999999999999999999999999999999999999999999998877
Q ss_pred ccchhccccccccCCCcEEEEEEEEee-cceEEEE
Q 000176 1443 TASQSEINNLSNLHVGDIVIGQIKRVE-SYGLFIT 1476 (1924)
Q Consensus 1443 ~~~~~~~~~~~~l~~G~~v~G~V~~v~-~~GvFV~ 1476 (1924)
||.. ....++.|+.+.|.|+++. +||++++
T Consensus 89 ~~~~----~~~~~~~g~~v~g~v~~v~~~~G~~~e 119 (275)
T 3aev_A 89 QRKA----KLQEFKRAQKAENLLRLAAEKLGKDFE 119 (275)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred hhHH----HHHhccCCCeEEEEEEEchhhcCCCHH
Confidence 6643 3567899999999999998 8999653
No 93
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.20 E-value=5.9e-11 Score=112.03 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=68.0
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000176 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~ 834 (1924)
++++|+++.|.|++++++|+||++.+++.||+|.|++++.+. +.|++||.|+|+|+++|++++|+.||+++..
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~ 74 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLE 74 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeecc
Confidence 467899999999999999999999999999999999997664 6799999999999999999999999999874
No 94
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=4.8e-11 Score=142.43 Aligned_cols=223 Identities=12% Similarity=0.019 Sum_probs=170.5
Q ss_pred cCCCCchHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCcchhhHHHHHHHH
Q 000176 1654 EKDAPRTPDEFERLVR--------SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI-----NIREENEKLNIWVAY 1720 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~--------~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i-----~~~ee~ekl~lWiay 1720 (1924)
.++..++...|++++. .+|....+|..++..+...|++++|...+++++... +. .......|..+
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~l 117 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD--HPAVAATLNNL 117 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Confidence 4557788899999987 467788999999999999999999999999999764 21 12234677788
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcC------CC---HHHHHHHHHHHHHhCChHHHHHHHHHHHHh--------cCCCH
Q 000176 1721 FNLENEYGNPPEEAVVKVFQRALQYC------DP---KKVHLALLGLYERTEQNKLADELLYKMIKK--------FKHSC 1783 (1924)
Q Consensus 1721 l~le~~~g~~~~e~a~~vferAl~~~------~~---~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~--------~~~~~ 1783 (1924)
..++...+ +.++|...|+++++.. +. ..+|..++.+|...|++++|.+.|++++.. .+...
T Consensus 118 ~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 195 (311)
T 3nf1_A 118 AVLYGKRG--KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA 195 (311)
T ss_dssp HHHHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHH
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 88888888 5599999999999874 22 278999999999999999999999999987 34456
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC---------CC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1784 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR---------HK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1784 ~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~---------~~----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
.+|..++..+... ++++|...|++++...+. .. +...+...+..+...+.+.+|...|+.++...|
T Consensus 196 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 275 (311)
T 3nf1_A 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP 275 (311)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc
Confidence 7899999999999 999999999999986432 11 122333334444456677788889999998899
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1850 KRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1850 k~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
....+|..++.++.+.|++++|..+|++++.
T Consensus 276 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 276 TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999997
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.19 E-value=3e-09 Score=127.14 Aligned_cols=228 Identities=9% Similarity=0.017 Sum_probs=197.8
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHH----HHc---
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA--DVEKARSIAERALQTINIREENEKLNIWVAYFNLE----NEY--- 1727 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~--e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le----~~~--- 1727 (1924)
.+++...++++|..+|++..+|..-.......+ .++++.+.++.+|...|... .+|.....+. ...
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y-----~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY-----QIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC-----HHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH-----HHHHHHHHHHHHHHHhcccc
Confidence 678999999999999999999999999999988 99999999999998777533 4787766665 444
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C------
Q 000176 1728 GNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNK--LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------ 1797 (1924)
Q Consensus 1728 g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e--~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~------ 1797 (1924)
+ +.+++.+.++++++.+|. ..+|.....++.+.+.++ ++.+.+++++...+.+..+|...+..+... .
T Consensus 124 ~--~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 F--DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp C--CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence 5 348899999999999986 499999999999999998 999999999999999999999888777766 5
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRSMFEGILSEY---PKRTDLWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~-~e~Ar~lfe~aL~~~---Pk~~dlw~~y~~le~k~gd~~~ar~ 1873 (1924)
++++.+.+.++|...|.+. .+|...+.++.+.|. .+.....+++++... |++..+|..+++.+.+.|+.++|..
T Consensus 202 ~~eEl~~~~~aI~~~p~n~--SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNP--STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCH--HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999999999884 899999999988886 455667888877655 8899999999999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHH
Q 000176 1874 LFERAISLSLPPKKMKFLFKKY 1895 (1924)
Q Consensus 1874 lferal~~~~~pk~~k~lw~~y 1895 (1924)
+|+++.. ++.|-+. .+|.--
T Consensus 280 ~~~~l~~-~~Dpir~-~yW~~~ 299 (306)
T 3dra_A 280 VYDLLKS-KYNPIRS-NFWDYQ 299 (306)
T ss_dssp HHHHHHH-TTCGGGH-HHHHHH
T ss_pred HHHHHHh-ccChHHH-HHHHHH
Confidence 9999886 5677777 477643
No 96
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.19 E-value=2.5e-12 Score=150.62 Aligned_cols=107 Identities=19% Similarity=0.258 Sum_probs=95.8
Q ss_pred cCCCCEEEEEEEEEecCeEEEEEC--CCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecccccC
Q 000176 759 IHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836 (1924)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G~fV~f~--~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~~ 836 (1924)
.++|+++.|+|++|+++|+||++. +++.||+|.|++++.++.++.+.|++||.|.|+|+++|++++|+.||+|....
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~- 89 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSP- 89 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCH-
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEeccc-
Confidence 458999999999999999999997 79999999999999999999999999999999999999999999999998743
Q ss_pred CCchhhHHHHHHHHHHHHHhhcccCCCccccccccccCccEEEEEEEEEec-ceeEE
Q 000176 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVV 892 (1924)
Q Consensus 837 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~i~~-~g~~v 892 (1924)
.+|..+...+++|+.++|+|..+.+ +|+++
T Consensus 90 --------------------------~p~~~~~~~~~~G~~v~G~V~~v~~~~G~fi 120 (308)
T 1q8k_A 90 --------------------------EEAIKCEDKFTKSKTVYSILRHVAEVLEYTK 120 (308)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred --------------------------ChHHHHHHHccCCCeeEEEEEEcccccCCcc
Confidence 1244456778899999999999998 59863
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=4.6e-11 Score=127.92 Aligned_cols=133 Identities=15% Similarity=0.093 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
.++|.+.|++|+...|.. ..|+.++.+|.+.|++++|.+.|+++++..|.++.+|..++..+... ++++|...|++++
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 355555555555544433 44555555666666666666666666655555566666666655555 5666666666666
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADR-GRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~-Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
+..|.+ ..+|..+|.++++.|++++ ++..++++++.+|++..+|.....++...|
T Consensus 93 ~~~p~~--~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 93 ELNPTQ--KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHCTTC--HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 555554 3555555655555555543 333345566656665555555555554444
No 98
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=5.8e-09 Score=128.84 Aligned_cols=267 Identities=10% Similarity=0.005 Sum_probs=199.7
Q ss_pred hcCCCCchHHHHHHHHHhCCCC-HH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchh-hHHHHHHHHHHHHHH
Q 000176 1653 LEKDAPRTPDEFERLVRSSPNS-SF----VWIKYMAFMLSMADVEKARSIAERALQTINIREEN-EKLNIWVAYFNLENE 1726 (1924)
Q Consensus 1653 ~~~~~p~a~~~ferll~~~P~s-~~----~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~-ekl~lWiayl~le~~ 1726 (1924)
..++.+++...|++++...|.+ .. ++..++..+...|++++|+..+++++...+...+. .....+..+..++..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3566888999999999877754 32 45566777888999999999999999754422111 112234455666777
Q ss_pred cCCCCHHHHHHHHHHHHhcCC-------C--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-----CHHHHHHHHHH
Q 000176 1727 YGNPPEEAVVKVFQRALQYCD-------P--KKVHLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVWLRRVQR 1792 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~-------~--~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-----~~~vw~~~a~~ 1792 (1924)
.| +.+.|...|+++++..+ + ...|..++.+|...|++++|...|++++...+. ....|..++..
T Consensus 106 ~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 106 QG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp TT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 89 56999999999998652 2 267788999999999999999999999987653 34678888998
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS-----QTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQE 1862 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~-----~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~----~dlw~~y~~le 1862 (1924)
+... ++++|...|++++...+.......|. ..+.++...|++++|+.++++++...|.. ...|..++.++
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 8888 99999999999998754422111222 23455778999999999999998876643 33677889999
Q ss_pred HHcCCHHHHHHHHHHHHhcC--CC-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1863 IRLGDVDLIRGLFERAISLS--LP-PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1863 ~k~gd~~~ar~lferal~~~--~~-pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
...|++++|..+|++++... .. +...-..+..........|+.+.+...+++|++..+.
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999998721 11 1112134555566677789999999999999987653
No 99
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=3.1e-11 Score=122.63 Aligned_cols=85 Identities=22% Similarity=0.265 Sum_probs=76.6
Q ss_pred hccCCCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCC--CEEEEEeec
Q 000176 1362 IEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--KRVEVTLKT 1438 (1924)
Q Consensus 1362 ~~~lk~G~~v~G~V~~v~~~G~fV~l~~-~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~--~ri~LSlk~ 1438 (1924)
...+++|+++.|+|++|+++|+||+|+. +.+|+||+++++|.++.++.+.|++||.|.++|+++|+++ ++|.||+|.
T Consensus 17 ~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~ 96 (119)
T 2cqo_A 17 ENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKV 96 (119)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTT
T ss_pred hcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEee
Confidence 3568899999999999999999999965 4799999999999999999999999999999999999864 799999999
Q ss_pred ccccccch
Q 000176 1439 SDSRTASQ 1446 (1924)
Q Consensus 1439 ~~~~~~~~ 1446 (1924)
...+||.+
T Consensus 97 ~~~~~~~~ 104 (119)
T 2cqo_A 97 VNQGTGKD 104 (119)
T ss_dssp BCSSSCCB
T ss_pred cccCCccc
Confidence 88776554
No 100
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=7.9e-11 Score=116.74 Aligned_cols=82 Identities=26% Similarity=0.411 Sum_probs=74.4
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCC---CcEEEEECccC-CCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeec
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSR---KLDAKVLLSNL-SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~---~v~g~v~~sel-sd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~ 1438 (1924)
.++++|+++.|+|+++.++|+||+|+. +++|+||++++ +|.++.++.+.|++||.|.++|+++|+ ++|.||+|.
T Consensus 8 ~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSlk~ 85 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSMKD 85 (103)
T ss_dssp SSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEESTT
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEEee
Confidence 467899999999999999999999996 89999999999 677888898999999999999999996 699999999
Q ss_pred ccccccch
Q 000176 1439 SDSRTASQ 1446 (1924)
Q Consensus 1439 ~~~~~~~~ 1446 (1924)
...+|+.+
T Consensus 86 ~~~~~~~~ 93 (103)
T 2eqs_A 86 VDQETGED 93 (103)
T ss_dssp BCTTTCCB
T ss_pred cccCCchh
Confidence 88776543
No 101
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=3e-09 Score=132.04 Aligned_cols=239 Identities=11% Similarity=0.023 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC------
Q 000176 1676 FVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------ 1748 (1924)
Q Consensus 1676 ~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~-~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~------ 1748 (1924)
..|...+.++...|++++|...|++|++.... ..+.+...+|..+..+....+ +.+.|...|++|+...+.
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK--QTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhCCCchh
Confidence 35667778888999999999999999975432 123344567777778888889 559999999999986431
Q ss_pred --HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC---C---CHHHHHHHHHHHHhc-CHHHHHHHHHHHHH-----hCCC
Q 000176 1749 --KKVHLALLGLYERTEQNKLADELLYKMIKKFK---H---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALL-----SLPR 1814 (1924)
Q Consensus 1749 --~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~---~---~~~vw~~~a~~l~~~-~~~~A~~l~~ral~-----~~p~ 1814 (1924)
-..|..++.+|...|++++|.+.|++++..++ + ...+|..+|..+... ++++|...|++|+. ..|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 16788999999999999999999999998653 1 245788999999999 99999999999999 4444
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCch
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK-----RTDLWSIYLDQEIRLGD---VDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk-----~~dlw~~y~~le~k~gd---~~~ar~lferal~~~~~pk 1886 (1924)
. ..++..+|.+++..|++++|...|++++...+. ....+..+..++...++ +.+|...|++. ...+.
T Consensus 260 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~ 334 (378)
T 3q15_A 260 L--PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAY 334 (378)
T ss_dssp H--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHH
T ss_pred H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhH
Confidence 3 689999999999999999999999999998654 23345555566667777 77788888772 23444
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000176 1887 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1922 (1924)
Q Consensus 1887 ~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~ 1922 (1924)
.. .++.....+....|+.+.|...|++|++.-++.
T Consensus 335 ~~-~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 335 IE-ACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 44 577788888899999999999999999887654
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=5.7e-10 Score=126.37 Aligned_cols=184 Identities=9% Similarity=-0.005 Sum_probs=122.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 000176 1674 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1753 (1924)
Q Consensus 1674 s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~ 1753 (1924)
+...|+..+..+++.|++++|...|+++++..|... ..|.. . ..... .+.+ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~---~--~~~~~-~~~~-------------~~~~~ 58 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT-----EMYYW---T--NVDKN-SEIS-------------SKLAT 58 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH-----HHHHH---H--HSCTT-SHHH-------------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-----HHHHH---h--hhcch-hhhh-------------HHHHH
Confidence 567788888899999999999999999998766321 23322 1 11110 0100 13455
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000176 1754 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1832 (1924)
Q Consensus 1754 ~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g 1832 (1924)
.++.+|.+.|++++|...|+++++..|.+..+|+.++..+... ++++|...|+++++..|.+ ..+|..+|.+++..|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN--LAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHh
Confidence 6777777788888888888888877777788888888877777 8888888888888877766 477777777776555
Q ss_pred C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000176 1833 V--ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1833 ~--~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk 1886 (1924)
. .+.+...|++++...|. ...|...+..+...|+++.|...|++++. +.|.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~ 189 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPS 189 (208)
T ss_dssp HHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCC
T ss_pred HHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence 3 34555666665432221 22455556666667778888888888777 4443
No 103
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.12 E-value=6.1e-11 Score=121.11 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=76.3
Q ss_pred EEeecccccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccC-cccccCcccccCCCcEEEEE
Q 000176 1434 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS-EDHVDNIETIYRAGEKVKVK 1512 (1924)
Q Consensus 1434 LSlk~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels-~~~~~~~~~~~~~Gd~Vk~~ 1512 (1924)
+||+++..+. ...+.++++|+++.|+|++|++||+||+|+..++.|++|.++.. +.+..++.+.|++||.|+|+
T Consensus 3 ~sl~P~~vn~-----~~~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vk 77 (119)
T 1wi5_A 3 SGSSGKNVNR-----VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCI 77 (119)
T ss_dssp CCCCCSCSSC-----CCCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEE
T ss_pred cccCHHHhhc-----cccHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEE
Confidence 5677766642 22478999999999999999999999999733566666655542 33445678899999999999
Q ss_pred EEEEecCCCeeEEeccccccCC
Q 000176 1513 ILKVDKEKRRISLGMKSSYFKN 1534 (1924)
Q Consensus 1513 Vl~id~e~~ri~lslK~s~~~~ 1534 (1924)
|+++|.+++||.||+|+.++..
T Consensus 78 V~~vd~~~~~i~Lslk~~~l~~ 99 (119)
T 1wi5_A 78 VEKVKGNGGVVSLSVGHSEVST 99 (119)
T ss_dssp EEECCTTSCEEEEECCCCCSCC
T ss_pred EEEEeCCCCEEEEEEchhhccc
Confidence 9999999999999999976644
No 104
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=2.7e-09 Score=124.94 Aligned_cols=169 Identities=15% Similarity=0.166 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWL 1787 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~----~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---~~vw~ 1787 (1924)
..|..........| +.++|...|+++++..|. ..+|+.++.+|.+.|++++|...|+++++.+|.+ ..+|+
T Consensus 16 ~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQG--KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45666667777888 459999999999999875 4899999999999999999999999999998743 67899
Q ss_pred HHHHHHHh--------c-CHHHHHHHHHHHHHhCCCCChH-HHH--------------HHHHHHHHHcCCHHHHHHHHHH
Q 000176 1788 RRVQRLLK--------Q-QQEGVQAVVQRALLSLPRHKHI-KFI--------------SQTAILEFKNGVADRGRSMFEG 1843 (1924)
Q Consensus 1788 ~~a~~l~~--------~-~~~~A~~l~~ral~~~p~~~~~-~~~--------------~~~A~le~~~g~~e~Ar~lfe~ 1843 (1924)
.++..++. . ++++|...|++++...|.+... .++ ..+|.+++..|++++|...|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999 8 9999999999999999987532 232 7889999999999999999999
Q ss_pred HHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCchh
Q 000176 1844 ILSEYPK---RTDLWSIYLDQEIRL----------GDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1844 aL~~~Pk---~~dlw~~y~~le~k~----------gd~~~ar~lferal~~~~~pk~ 1887 (1924)
++..+|+ ..++|..++..+... |++++|...|++++. ..|+.
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 228 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDS 228 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCC
Confidence 9999998 456899899988876 889999999999998 45544
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.12 E-value=3.3e-10 Score=121.28 Aligned_cols=145 Identities=12% Similarity=-0.010 Sum_probs=129.0
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000176 1755 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833 (1924)
Q Consensus 1755 l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~ 1833 (1924)
|+.++...+++++|.+.|++++...|..+..|+.+|..+++. ++++|...|+++++..|.+ ..+|..+|.+++..|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--PKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCc
Confidence 566777788999999999999988888889999999999999 9999999999999999987 6999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000176 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1904 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~-ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~ 1904 (1924)
+++|...|+++++..|++.++|..++.++.+.|+++. ++..+++|+. +.|+.. .+|.....+....|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~-~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSP-AVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCH-HHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999865 5556799999 888888 688888888777775
No 106
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.12 E-value=2.2e-08 Score=128.96 Aligned_cols=240 Identities=7% Similarity=-0.097 Sum_probs=189.6
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH----
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE---- 1726 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~----~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~---- 1726 (1924)
.+.+++...|++++.. ++...|..++.++.. .+++++|...|+++++.-+ ...+..+..+...
T Consensus 165 ~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~y~~g~g~ 235 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD-------ELGQLHLADMYYFGIGV 235 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCC
Confidence 3466788888888764 678899999998887 7899999999999986432 1234444444443
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc------
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ------ 1796 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~----~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~------ 1796 (1924)
.+ +.++|...|++|+.. .....+..++.+|.. .+++++|...|+++... .++..++.++.++...
T Consensus 236 ~~--~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 236 TQ--DYTQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp CC--CHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCC
T ss_pred CC--CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcC
Confidence 34 568899999999876 345788888889988 88999999999999865 5788888888888763
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVD 1869 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g---~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k----~gd~~ 1869 (1924)
++++|...|+++++.. +..++..+|.+++..| ++++|..+|++++.. .+.+.|..++.++.. .++++
T Consensus 311 ~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 311 NREQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp CHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 8999999999998763 3578999999998867 789999999999876 568899999999998 89999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKS----VGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~k~lw~~yl~~E~~----~G~~~~~~~v~~rAle~v 1919 (1924)
+|..+|++++... . . ..|.....+... .+|.+.|...|++|++.-
T Consensus 385 ~A~~~~~~A~~~~-~---~-~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 385 QAAIWMRKAAEQG-L---S-AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHTT-C---H-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-C---H-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999832 2 2 345555555555 689999999999998764
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.12 E-value=1.3e-09 Score=130.20 Aligned_cols=180 Identities=12% Similarity=0.042 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
.+.....+.+.+ |. ...++.++..+.+.|++++|.+.|++++...|++..+|+.++..+++. ++++|..+|++++
T Consensus 102 ~~~l~~~l~~~l---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 102 EEAIRALLDXVL---PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHS---CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHc---CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 344444454443 44 378889999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK-- 1887 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~-- 1887 (1924)
...|.. ...+...+..+...++.+.|...|++++...|++.++|..++.++...|+++.|...|++++. ..|..
T Consensus 179 ~~~p~~--~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~--~~p~~~~ 254 (287)
T 3qou_A 179 LQDQDT--RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR--XDLTAAD 254 (287)
T ss_dssp GGGCSH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTGGG
T ss_pred hhhcch--HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--ccccccc
Confidence 888843 344555555566778888899999999999999999999999999999999999999999998 44443
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000176 1888 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1888 ~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v 1919 (1924)
. ..|..++.+....|+.+.+...|+|++..+
T Consensus 255 ~-~a~~~l~~~~~~~g~~~~a~~~~r~al~~~ 285 (287)
T 3qou_A 255 G-QTRXTFQEILAALGTGDALASXYRRQLYAL 285 (287)
T ss_dssp G-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Confidence 4 578888888888999999999999988653
No 108
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=1.4e-09 Score=130.17 Aligned_cols=203 Identities=12% Similarity=0.061 Sum_probs=155.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHHHH
Q 000176 1682 MAFMLSMADVEKARSIAERALQTINIRE-ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKVHL 1753 (1924)
Q Consensus 1682 ~~~~~~~~e~dkAr~v~eraL~~i~~~e-e~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~i~~ 1753 (1924)
+..+...|++++|...|++|+...+... .......|.....++...| +.++|...|++|++..+. -..|.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--NSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5567788999999999999997532111 1122457788888888889 559999999999987642 26899
Q ss_pred HHHHHHHHh-CChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChH-----HH
Q 000176 1754 ALLGLYERT-EQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-----KF 1820 (1924)
Q Consensus 1754 ~l~~i~~~~-gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~-----~~ 1820 (1924)
.++.+|... |++++|.+.|++++..++.. ..+|..++.++... ++++|...|++++...|..... .+
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 999999996 99999999999999987533 56799999999999 9999999999999998876432 37
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL-----WSIYLDQEI--RLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1821 ~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl-----w~~y~~le~--k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
|...|.++...|+++.|+..|++++...|...+. +..++..+. ..++++.|...|++++. +.|...
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~~ 274 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWKI 274 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHHH
Confidence 8889999999999999999999999998876553 233333332 34668889999988877 776554
No 109
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=1.6e-09 Score=129.66 Aligned_cols=203 Identities=10% Similarity=0.009 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----C---HHHHHHHHHHHHHh
Q 000176 1690 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD----P---KKVHLALLGLYERT 1762 (1924)
Q Consensus 1690 e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~----~---~~i~~~l~~i~~~~ 1762 (1924)
++++|...|++|. ++....|.+ ++|.+.|++|+...+ . -..|..++.+|...
T Consensus 32 ~~~~A~~~~~~a~-------------------~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~ 90 (292)
T 1qqe_A 32 KFEEAADLCVQAA-------------------TIYRLRKEL--NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG 90 (292)
T ss_dssp HHHHHHHHHHHHH-------------------HHHHHTTCT--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHH-------------------HHHHHcCCH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC
Confidence 4889999999885 233567855 999999999998742 2 27899999999999
Q ss_pred CChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHh-c-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHH
Q 000176 1763 EQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLK-Q-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFK 1830 (1924)
Q Consensus 1763 gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~-~-~~~~A~~l~~ral~~~p~~~~----~~~~~~~A~le~~ 1830 (1924)
|++++|...|++++..++.. ..+|..++..+.. . ++++|...|++|+...|...+ ..++..+|.++..
T Consensus 91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999987532 5689999999998 5 999999999999998875422 3678999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHH----HHHHHHHHH
Q 000176 1831 NGVADRGRSMFEGILSEYPKRTD-------LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF----LFKKYLEYE 1899 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~~d-------lw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~----lw~~yl~~E 1899 (1924)
.|++++|...|++++...|.... .|..++..+...|+++.|+..|++++. +.|..... ++...+...
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~ 248 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAV 248 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999887543 577888889999999999999999998 55543311 222222222
Q ss_pred H--HcCCHHHHHHHHHHH
Q 000176 1900 K--SVGEEERIEYVKQKA 1915 (1924)
Q Consensus 1900 ~--~~G~~~~~~~v~~rA 1915 (1924)
. ..++++.+...|+++
T Consensus 249 ~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 249 NEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HTTCTTTHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHhccC
Confidence 2 235577766666554
No 110
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.11 E-value=1.5e-08 Score=125.10 Aligned_cols=241 Identities=12% Similarity=0.006 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC---H---
Q 000176 1676 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP---K--- 1749 (1924)
Q Consensus 1676 ~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~---~--- 1749 (1924)
.++...+..+...|++++|+..+++++...+..........+..+..++...| +.+.|...|++|+...+. .
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--ELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34455666778899999999999999987764332223344555666677788 569999999999986532 1
Q ss_pred -HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC---
Q 000176 1750 -KVHLALLGLYERTEQNKLADELLYKMIKKFK--------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--- 1816 (1924)
Q Consensus 1750 -~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~--------~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~--- 1816 (1924)
..+..++.+|...|++++|.+.|++++..++ ....+|..++..+... ++++|...|++++...+...
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 4467888999999999999999999998762 2345677888888888 99999999999999887532
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcCCCchh--
Q 000176 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSI-----YLDQEIRLGDVDLIRGLFERAISLSLPPKK-- 1887 (1924)
Q Consensus 1817 ~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk--~~dlw~~-----y~~le~k~gd~~~ar~lferal~~~~~pk~-- 1887 (1924)
...++..+|.++...|++++|+..|++++...+. ....|.. .+.++...|+++.|+.++++++. ..+..
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~ 250 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK--PEFANNH 250 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC--CCCTTCG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC--CCCCcch
Confidence 2467888999999999999999999999876433 2123432 33446789999999999999887 32221
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000176 1888 -MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1920 (1924)
Q Consensus 1888 -~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~ 1920 (1924)
....|..+.......|+.+.+...+++|++...
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 112456667778888999999999999987654
No 111
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.10 E-value=5.3e-10 Score=139.03 Aligned_cols=224 Identities=9% Similarity=-0.003 Sum_probs=181.8
Q ss_pred cCCCCchHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcch--hhHHHHHHHHHHHHH
Q 000176 1654 EKDAPRTPDEFERLVRS---SPN---SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE--NEKLNIWVAYFNLEN 1725 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~---~P~---s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee--~ekl~lWiayl~le~ 1725 (1924)
.++..+|...|++++.. .|+ ....|..++.++...|++++|...+++|++..+...+ ......|..+.....
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 46688999999999865 233 5688999999999999999999999999986554332 122345666677777
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhCChHHHHHHHHHHHHh-----c-CCCHHHHHHHHHH
Q 000176 1726 EYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKK-----F-KHSCKVWLRRVQR 1792 (1924)
Q Consensus 1726 ~~g~~~~e~a~~vferAl~~~~~~-------~i~~~l~~i~~~~gk~e~A~~~fe~~lk~-----~-~~~~~vw~~~a~~ 1792 (1924)
..| +.++|.+.|++|++..+.. .+|..++.+|...|++++|.+.|++++.. . +....+|..++..
T Consensus 196 ~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 196 DLK--QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred Hhc--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 889 5599999999999875321 68999999999999999999999999983 4 5567889999999
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCC---hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHK---HIKFISQTAILEFKNGV---ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1865 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~---~~~~~~~~A~le~~~g~---~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~ 1865 (1924)
+... ++++|...|++++...+... ....+..++.++...|+ +++|..++++. ...|....++..++.++.+.
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 352 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHER 352 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHC
Confidence 9999 99999999999998754321 12335668888889998 88888888886 33344456888999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 000176 1866 GDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1866 gd~~~ar~lferal~ 1880 (1924)
|++++|...|++++.
T Consensus 353 g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 353 KNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999997
No 112
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.09 E-value=1.9e-10 Score=133.33 Aligned_cols=75 Identities=29% Similarity=0.614 Sum_probs=71.2
Q ss_pred CCCcEEEEEEEEeecceEEEEEec-CceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~-~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
++|++|.|+|++|.+||+||+|++ .+++||||+|++++.++.++.+.|++||.|.|+|+++|+++++|+||+|..
T Consensus 10 ~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~ 85 (275)
T 3aev_A 10 EEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRV 85 (275)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 589999999999999999999973 389999999999999999999999999999999999999999999999984
No 113
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=2.3e-09 Score=125.60 Aligned_cols=227 Identities=14% Similarity=0.118 Sum_probs=173.9
Q ss_pred HcCCHHHHHHHHHHHHHhcCC---cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC------CC---HHHHHH
Q 000176 1687 SMADVEKARSIAERALQTINI---REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------DP---KKVHLA 1754 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~---~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~------~~---~~i~~~ 1754 (1924)
..+++++|...|++|++.... ........+|..+...+...| +.+.|...|++|++.. +. ..+|..
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 468999999999999985421 112345678888888888899 5599999999999873 22 278999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC-----C-CCChHH
Q 000176 1755 LLGLYERTEQNKLADELLYKMIKKF--------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL-----P-RHKHIK 1819 (1924)
Q Consensus 1755 l~~i~~~~gk~e~A~~~fe~~lk~~--------~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~-----p-~~~~~~ 1819 (1924)
++.+|...|++++|.+.|++++..+ +....+|..++..+... ++++|...|++++... + ......
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999999874 44577899999999999 9999999999999872 1 112357
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCC
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSE---------YPKRTDLWSIYLDQEIRLGD------VDLIRGLFERAISLSLP 1884 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~---------~Pk~~dlw~~y~~le~k~gd------~~~ar~lferal~~~~~ 1884 (1924)
++..+|.+++..|++++|...|++++.. .+....+|......+...+. +..+...++.+.. ..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 248 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DS 248 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CC
Confidence 8999999999999999999999999986 44555678887777765443 3334444443322 44
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1885 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1885 pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
|... ..|..+..+....|+.+.|..++++|++.
T Consensus 249 ~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVN-TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555 57888888889999999999999999863
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.08 E-value=4.4e-09 Score=120.51 Aligned_cols=167 Identities=13% Similarity=0.066 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHH---HHHH
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK----KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK---VWLR 1788 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~----~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~---vw~~ 1788 (1924)
.|..........| +.++|...|+++++..|.. ..|+.++.+|.+.|++++|.+.|+++++.+|.++. +|+.
T Consensus 6 ~~~~~a~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDG--NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4555556666778 4599999999999987752 78999999999999999999999999999987754 6777
Q ss_pred HHHHHHh------------------c-CHHHHHHHHHHHHHhCCCCChHH---------------HHHHHHHHHHHcCCH
Q 000176 1789 RVQRLLK------------------Q-QQEGVQAVVQRALLSLPRHKHIK---------------FISQTAILEFKNGVA 1834 (1924)
Q Consensus 1789 ~a~~l~~------------------~-~~~~A~~l~~ral~~~p~~~~~~---------------~~~~~A~le~~~g~~ 1834 (1924)
.+..+.. . ++++|...|+++++.+|.+.... .....|.++++.|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 7776654 4 78999999999999999875321 114678888999999
Q ss_pred HHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000176 1835 DRGRSMFEGILSEYPKRT---DLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~~Pk~~---dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk 1886 (1924)
+.|...|++++..+|+.. ++|...+..+.+.|+++.|+..|+++.. .+|+
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~--~~~~ 216 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA--NSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--CCSC
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCC
Confidence 999999999999999976 5799999999999999999999999887 4443
No 115
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.08 E-value=4.8e-08 Score=125.74 Aligned_cols=237 Identities=6% Similarity=-0.115 Sum_probs=150.8
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH----c
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE----Y 1727 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~----~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~----~ 1727 (1924)
+.+++...|+++.. ++++..|..++.++.. .+++++|...|++|...-. ...|..+..++.. .
T Consensus 94 ~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 94 DYAQAVIWYKKAAL--KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR-------DSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCCC
Confidence 35566666666654 3466677777776666 5677777777777765321 2234444444443 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c-CH
Q 000176 1728 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQ 1798 (1924)
Q Consensus 1728 g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~----~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~----~-~~ 1798 (1924)
+ +.++|.+.|++|++. .....|..++.+|.. .+++++|...|++++.. .++..++.++.++.. . ++
T Consensus 165 ~--d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 165 R--DYVMAREWYSKAAEQ-GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp C--CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred C--CHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 3 457777777777765 345677777777776 67777777777777764 456677777777765 4 77
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHH
Q 000176 1799 EGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-----GDVD 1869 (1924)
Q Consensus 1799 ~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~----~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~-----gd~~ 1869 (1924)
++|...|++++... +...+..+|.++.. .+++++|..+|++++.. .+.+.+..++.++... ++++
T Consensus 240 ~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHH
Confidence 77777777777542 24677777777776 67777777777777643 4566777777777766 7777
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG---EEERIEYVKQKAME 1917 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G---~~~~~~~v~~rAle 1917 (1924)
+|..+|++++. ..+. ..|.....+....| +.+.+...|++|++
T Consensus 314 ~A~~~~~~a~~--~~~~---~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 314 QAISWYTKSAE--QGDA---TAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHHHH--TTCH---HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCH---HHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 77777777777 2222 23333333433335 56667777777665
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=4.6e-09 Score=120.37 Aligned_cols=174 Identities=8% Similarity=-0.063 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----H
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK----K 1750 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~----~ 1750 (1924)
...|...+..+++.|++++|...|+++++..|..... ...|..+.......+ +.++|...|+++++..|.. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--~~a~~~lg~~~~~~~--~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS--QQVQLDLIYAYYKNA--DLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH--HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHCcCCCcHHH
Confidence 4556666666666777777777777777665543211 124444455555666 3366777777777666653 3
Q ss_pred HHHHHHHHHHH------------------hCChHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHh
Q 000176 1751 VHLALLGLYER------------------TEQNKLADELLYKMIKKFKHSCKVW-----------------LRRVQRLLK 1795 (1924)
Q Consensus 1751 i~~~l~~i~~~------------------~gk~e~A~~~fe~~lk~~~~~~~vw-----------------~~~a~~l~~ 1795 (1924)
.|+.++.+|.. .|++++|...|+++++.+|++..+| +.++.++++
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555655544 5678899999999998888877665 567778888
Q ss_pred c-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000176 1796 Q-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1852 (1924)
Q Consensus 1796 ~-~~~~A~~l~~ral~~~p~~~~-~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~ 1852 (1924)
. ++++|...|+++++.+|.... ..++...|..+.+.|++++|+..|++++...|+..
T Consensus 160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 8 999999999999999998743 37899999999999999999999999999998753
No 117
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=4.1e-09 Score=107.91 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.+|...|++++|...|++++...+.....|..++..+... ++++|..+|++++...|.. ..+|..+|.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHHHHHH
Confidence 36888899999999999999999999998888899999999998888 9999999999999988776 57889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
...|++++|..+|++++...|....+|..++.++.+.|++++|...|++++.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999987
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.06 E-value=6.7e-10 Score=122.01 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~ 1829 (1924)
.++.++..+.+.|++++|...|++++...|++..+|+.++..+... ++++|...|++++...| + ...+...+.+.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D--NSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C--hHHHHHHHHHHH
Confidence 3455555666666666666666666666666666666666666666 66666666666666655 3 233333333322
Q ss_pred -HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHHcCCHH
Q 000176 1830 -KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK--MKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1830 -~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~--~k~lw~~yl~~E~~~G~~~ 1906 (1924)
..+....|...|++++...|++..+|..++..+...|+++.|...|++++. ..|.. . ..|..+.......|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~-~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK--VNLGAQDG-EVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTTTTT-HHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCcccChH-HHHHHHHHHHHHhCCCC
Confidence 212223356666666666666666666666666666666666666666665 33321 2 24555555555566666
Q ss_pred HHHHHHHHHHHH
Q 000176 1907 RIEYVKQKAMEY 1918 (1924)
Q Consensus 1907 ~~~~v~~rAle~ 1918 (1924)
.+...|++|+..
T Consensus 162 ~A~~~y~~al~~ 173 (176)
T 2r5s_A 162 AIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 666666666543
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=4.5e-09 Score=125.40 Aligned_cols=169 Identities=10% Similarity=-0.040 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHH
Q 000176 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1750 (1924)
Q Consensus 1671 ~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~ 1750 (1924)
-|++...|+..+..+.+.|++++|...|+++++..|... ..|..+..++...| +.++|...|++++...|...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~~la~~~~~~g--~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG-----EIGLLLAETLIALN--RSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH-----HHHHHHHHHHHHTT--CHHHHHHHHTTSCGGGCSHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch-----hHHHHHHHHHHHCC--CHHHHHHHHHhCchhhcchH
Confidence 477888888888888888888888888888887766432 35666666666666 44666767776666665432
Q ss_pred H-HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1751 V-HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1751 i-~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
. +......+.+.++.+.|.+.|++++...|++..+|+.++..+... ++++|...|+++++..|......++..++.++
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 2 222222344445555555555555555555555555555555555 55555555555555555543335555555555
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~ 1846 (1924)
...|+.+.|...|+++|.
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 555555555555555543
No 120
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=3e-09 Score=120.39 Aligned_cols=163 Identities=11% Similarity=0.003 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR----------------RVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~----------------~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
..++..+..+.+.|++++|...|++++...|.++.+|+. ++..+... ++++|...|+++++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 345666677888899999999999999888888888888 99999999 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCchhHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD--VDLIRGLFERAISLSLPPKKMKF 1890 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd--~~~ar~lferal~~~~~pk~~k~ 1890 (1924)
|.+ ..+|..+|.+++..|++++|...|++++...|++.+.|..++.++...|+ ...+...|.+++. .+|...
T Consensus 85 p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-- 158 (208)
T 3urz_A 85 PNN--VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY-- 158 (208)
T ss_dssp TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH--
T ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH--
Confidence 987 68999999999999999999999999999999999999999999877654 4556778888765 444332
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000176 1891 LFKKYLEYEKSVGEEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1891 lw~~yl~~E~~~G~~~~~~~v~~rAle~ 1918 (1924)
.|..........|+++.|...|++|++.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2222222233468899999999998753
No 121
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=1.4e-09 Score=119.34 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1794 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~ 1794 (1924)
.++.........| +.++|...|+++++..|.. ..|..++.+|...|++++|...|++++...| ++..+..++...+
T Consensus 8 ~~~~~a~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQG--EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTT--CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 4777788888889 5699999999999998875 9999999999999999999999999999888 7877766655433
Q ss_pred -hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHH
Q 000176 1795 -KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDL 1870 (1924)
Q Consensus 1795 -~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~--~dlw~~y~~le~k~gd~~~ 1870 (1924)
.. ....|...|++++...|.+ ..+|..+|.++...|++++|...|+++++..|.. ..+|..++.++...|+.+.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDN--FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22 4456899999999999987 5899999999999999999999999999999976 5599999999999999999
Q ss_pred HHHHHHHHHh
Q 000176 1871 IRGLFERAIS 1880 (1924)
Q Consensus 1871 ar~lferal~ 1880 (1924)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.01 E-value=3.8e-09 Score=109.43 Aligned_cols=118 Identities=10% Similarity=-0.029 Sum_probs=104.7
Q ss_pred HHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH
Q 000176 1742 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1819 (1924)
Q Consensus 1742 Al~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~ 1819 (1924)
+...+|.. ..|...++.|.+.|++++|.+.|+++++..|.++.+|..++..+... ++++|...|+++++..|.+ ..
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~ 82 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--IK 82 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--hH
Confidence 33334443 78888999999999999999999999999999999999999999999 9999999999999999887 68
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
+|..+|..++..|++++|...|+++|+..|++.+++..+..+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999999998877654
No 123
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.01 E-value=1.3e-07 Score=113.71 Aligned_cols=232 Identities=10% Similarity=0.007 Sum_probs=185.3
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD----------VEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1726 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e----------~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~ 1726 (1924)
.+++.+.++++|..+|++..+|..-..+....+. ++++...++.++...|-. ..+|.....+...
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn-----y~aW~hR~wlL~~ 120 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----YGTWHHRCWLLSR 120 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHhc
Confidence 6688999999999999999999887777665543 688999999999876643 3589988888888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCC-hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--------
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQ-NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-------- 1796 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk-~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-------- 1796 (1924)
++.+..+.+.+.+.++++..|. ..+|....-++...+. ++++.+.+.+++...+.+..+|...+..+...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence 8742258899999999999886 4999999999999998 59999999999999999999999888776643
Q ss_pred -------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000176 1797 -------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN-----------GVADRGRSMFEGILSEYPKRTDLWSIY 1858 (1924)
Q Consensus 1797 -------~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~-----------g~~e~Ar~lfe~aL~~~Pk~~dlw~~y 1858 (1924)
.++++.+.+.+++...|.+. .+|.....++... +.++++...++.++...|++.-.+..+
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~d~--SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 37889999999999999984 7887666665544 357899999999999999984333333
Q ss_pred HHHHH---HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1859 LDQEI---RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1859 ~~le~---k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
+.+.. ..+..++++..|.+++. +.|-+. .+|.+++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~----~~y~d~~~~ 318 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKA--VDPMRA----AYLDDLRSK 318 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGH----HHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHH--hCcchh----hHHHHHHHH
Confidence 33322 25778899999999998 777665 244455543
No 124
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=3.6e-09 Score=139.07 Aligned_cols=152 Identities=11% Similarity=0.031 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
.++|.+.|++|++..|. ...|..++.+|.+.|++++|.+.|+++++..+.+..+|+.++..+... ++++|.+.|++++
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 84 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 48899999999999887 499999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCch
Q 000176 1810 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL---GDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1810 ~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~---gd~~~ar~lferal~~~~~pk 1886 (1924)
+..|.+ ..+|..+|.+++..|++++|...|+++++..|++..+|..++.++... |++++|...|++++. ..|.
T Consensus 85 ~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~--~~p~ 160 (568)
T 2vsy_A 85 DAAPEH--PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA--QGVG 160 (568)
T ss_dssp HHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH--HTCC
T ss_pred hcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh--cCCc
Confidence 999887 589999999999999999999999999999999999999999999999 999999999999998 4444
Q ss_pred h
Q 000176 1887 K 1887 (1924)
Q Consensus 1887 ~ 1887 (1924)
.
T Consensus 161 ~ 161 (568)
T 2vsy_A 161 A 161 (568)
T ss_dssp C
T ss_pred c
Confidence 3
No 125
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.99 E-value=3.7e-08 Score=117.72 Aligned_cols=228 Identities=11% Similarity=0.107 Sum_probs=186.9
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 000176 1681 YMAFMLSMADV-EKARSIAERALQTINIREENEKLNIWVAYFNLENEYG-NPPEEAVVKVFQRALQYCDPK-KVHLALLG 1757 (1924)
Q Consensus 1681 y~~~~~~~~e~-dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g-~~~~e~a~~vferAl~~~~~~-~i~~~l~~ 1757 (1924)
|....++.+++ ++|...++++|...|.. ..+|.....+....+ . ..+++.+.++++++.+|.. .+|.....
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~nP~~-----~taWn~R~~~L~~l~~~-~~~eeL~~~~~~L~~nPk~y~aW~~R~~ 111 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINELASH-----YTIWIYRFNILKNLPNR-NLYDELDWCEEIALDNEKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTCTTS-CHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCcHH-----HHHHHHHHHHHHHcccc-cHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 33444455555 68999999999876642 358988777777666 3 3599999999999999975 99999999
Q ss_pred HH----HHh---CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHH--HHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1758 LY----ERT---EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQE--GVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1758 i~----~~~---gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~--~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
++ ... ++++++.+.+++++..+|.+..+|...+-.+... .++ ++.+.+++++...|.+ ..+|..-+.+
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--~sAW~~R~~l 189 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--NSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Confidence 88 666 7899999999999999999999999998888777 777 9999999999999988 4799999998
Q ss_pred HHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHH
Q 000176 1828 EFKNGV------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD-VDLIRGLFERAISLS-LPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1828 e~~~g~------~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd-~~~ar~lferal~~~-~~pk~~k~lw~~yl~~E 1899 (1924)
....+. ++++...+++++..+|.+..+|+....++.+.|. .+.+...+++++..+ ..++.. ..|.-.++..
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~al~~la~~~ 268 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS-FALETLAKIY 268 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH-HHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH-HHHHHHHHHH
Confidence 888887 9999999999999999999999999888888886 444677788777622 113344 4566666666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 000176 1900 KSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1900 ~~~G~~~~~~~v~~rAle 1917 (1924)
.+.|+.++|..+|+++.+
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 678999999999999875
No 126
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.98 E-value=5.8e-09 Score=129.46 Aligned_cols=224 Identities=10% Similarity=-0.002 Sum_probs=181.0
Q ss_pred cCCCCchHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcch--hhHHHHHHHHHHHHH
Q 000176 1654 EKDAPRTPDEFERLVRSS------PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE--NEKLNIWVAYFNLEN 1725 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~------P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee--~ekl~lWiayl~le~ 1725 (1924)
.++..+|...|++++... |.....|..++.++...+++++|...+++|+...+...+ ......|..+.....
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 566889999999998642 235678889999999999999999999999986553322 123456777777788
Q ss_pred HcCCCCHHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHHhCChHHHHHHHHHHHH-----hcCCCHHHHHHHHHHH
Q 000176 1726 EYGNPPEEAVVKVFQRALQYCD---P----KKVHLALLGLYERTEQNKLADELLYKMIK-----KFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1726 ~~g~~~~e~a~~vferAl~~~~---~----~~i~~~l~~i~~~~gk~e~A~~~fe~~lk-----~~~~~~~vw~~~a~~l 1793 (1924)
..+ +.+.|.+.|++|++..+ . ..+|..++.+|...|++++|.+.|++++. ..+....++..++..+
T Consensus 194 ~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 194 DFK--HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HhC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 889 55999999999998642 2 26899999999999999999999999998 5566688999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCC---ChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRH---KHIKFISQTAILEFKNGV---ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~---~~~~~~~~~A~le~~~g~---~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
... ++++|...|++++...+.. .....+..++.++...++ +++|...|++. ...|....++..++.++.+.|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 999 9999999999999987642 223455666667777888 88888888872 233444567888999999999
Q ss_pred CHHHHHHHHHHHHh
Q 000176 1867 DVDLIRGLFERAIS 1880 (1924)
Q Consensus 1867 d~~~ar~lferal~ 1880 (1924)
++++|...|++++.
T Consensus 351 ~~~~A~~~~~~al~ 364 (378)
T 3q15_A 351 HFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999997
No 127
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=6.9e-09 Score=136.36 Aligned_cols=152 Identities=13% Similarity=0.158 Sum_probs=125.1
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1840 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~l 1840 (1924)
+|++++|.+.|+++++..+.+..+|+.++..+... ++++|.+.|+++++..|.+ ..+|..+|.+++..|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH--PEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC--HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHH
Confidence 57889999999999999999999999999999999 9999999999999999877 58999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 000176 1841 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV---GEEERIEYVKQKAME 1917 (1924)
Q Consensus 1841 fe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~---G~~~~~~~v~~rAle 1917 (1924)
|+++++..|++..+|..++..+.+.|++++|...|++++. +.|... ..|..+....... |+.+.+...+++|++
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEP-YITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 677776 5788888888888 999999999999987
Q ss_pred H
Q 000176 1918 Y 1918 (1924)
Q Consensus 1918 ~ 1918 (1924)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 5
No 128
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.96 E-value=3.5e-10 Score=130.97 Aligned_cols=78 Identities=28% Similarity=0.513 Sum_probs=72.9
Q ss_pred cccCCCcEEEEEEEEeecceEEEEEec-CceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1453 SNLHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1453 ~~l~~G~~v~G~V~~v~~~GvFV~l~~-~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
..+++|+++.|+|++|.+||+||+|++ .++.||+|+||+++.++.++.+.|++||.|.|+|+++|+++++|.||+|..
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~ 85 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKV 85 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTS
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 457899999999999999999999962 389999999999999999999999999999999999999999999999985
No 129
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.92 E-value=8.6e-10 Score=149.74 Aligned_cols=81 Identities=11% Similarity=0.189 Sum_probs=76.3
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccc-ccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~-~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
+..++++|++|.|+|++|.+||+||+|+. +++||||+|+|++.+ +.++.+.|++||.|+|+|++||.+++||+||||.
T Consensus 896 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 896 SEKTFFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp CTTTSCTTCEEEEEEEEECSSCEEEECTT-SCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCH
T ss_pred cHhhCCCCCEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecH
Confidence 46899999999999999999999999965 899999999999998 8899999999999999999999999999999998
Q ss_pred ccc
Q 000176 1530 SYF 1532 (1924)
Q Consensus 1530 s~~ 1532 (1924)
+.+
T Consensus 975 ~dl 977 (1219)
T 3psi_A 975 HDV 977 (1219)
T ss_dssp HHH
T ss_pred HHh
Confidence 644
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.92 E-value=2.1e-09 Score=115.16 Aligned_cols=107 Identities=8% Similarity=-0.045 Sum_probs=72.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1772 LYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1772 fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
|++++...|++...|+.++..+++. ++++|...|++++...|.+ ..+|..+|..++..|++++|...|+++++..|+
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 3444444555666667777666666 7777777777777776665 466777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1851 RTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1851 ~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+..+|..++..+.+.|+++.|...|++++.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777777777776
No 131
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.91 E-value=3.8e-11 Score=156.67 Aligned_cols=128 Identities=20% Similarity=0.372 Sum_probs=53.8
Q ss_pred CCCCEE--EEEEEE--EeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccc
Q 000176 1366 SPNMIV--QGYVKN--VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1441 (1924)
Q Consensus 1366 k~G~~v--~G~V~~--v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~ 1441 (1924)
+.|+++ .|++.+ +.++|+||+++. +|.|+++..++...+...+ +|.. ..
T Consensus 608 ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--dG~v~Is~~~~~~~~~a~~--------------------~i~~-----i~ 660 (757)
T 1e3p_A 608 KIGEVIGPKRQMINQIQEDTGAEITIED--DGTIYIGAADGPAAEAARA--------------------TING-----IA 660 (757)
T ss_dssp -------------CTTCCCCCSCC----------CCCBSSHHHHCC----------------------------------
T ss_pred HeehcccccceeeehhhHhhCCEEEecC--CceEEEecCCHHHHHHHHH--------------------HHHH-----hc
Confidence 455555 356665 478999999984 8999999887654332111 1100 00
Q ss_pred cccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeecccc----CcccccCcccccCCCcEEEEEEEEEe
Q 000176 1442 RTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL----SEDHVDNIETIYRAGEKVKVKILKVD 1517 (1924)
Q Consensus 1442 ~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sel----s~~~~~~~~~~~~~Gd~Vk~~Vl~id 1517 (1924)
+ ..++++|++|.|+|++|.+||+||+|.+ +++||+|+|++ +|.+++++.+.|++||.|+|+|+++|
T Consensus 661 ~---------p~~~~vG~i~~G~V~~i~~fGaFV~l~~-g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd 730 (757)
T 1e3p_A 661 N---------PTSPEVGERILGSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEID 730 (757)
T ss_dssp ---------------------CBEEECC-CSCEECCC----CCCCC-------------------CCSSCBCCCCCCCCC
T ss_pred c---------hhhcccccEEEEEEEEccccEEEEEEcC-CcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEEC
Confidence 1 1468899999999999999999999987 89999999999 99999999999999999999999999
Q ss_pred cCCCeeEEeccccc
Q 000176 1518 KEKRRISLGMKSSY 1531 (1924)
Q Consensus 1518 ~e~~ri~lslK~s~ 1531 (1924)
+ ++||+||+|+..
T Consensus 731 ~-~grI~LS~k~~~ 743 (757)
T 1e3p_A 731 S-RGKLSLIPVIEG 743 (757)
T ss_dssp S-SCC---------
T ss_pred C-CCCEEEEEecCC
Confidence 8 999999999853
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=2.9e-08 Score=106.49 Aligned_cols=129 Identities=13% Similarity=-0.001 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++..+...|++++|...|++++...+.+..+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHH
Confidence 67888899999999999999999999999999999999999999999 9999999999999998876 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHh
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ--EIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l--e~k~gd~~~ar~lferal~ 1880 (1924)
+..|++++|...|++++...|.+..+|..+... +.+.|++++|..+|+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888555444 7778899999988888764
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.91 E-value=4.7e-09 Score=128.29 Aligned_cols=144 Identities=13% Similarity=0.028 Sum_probs=127.1
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHhc-C
Q 000176 1735 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---------------CKVWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1735 a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---------------~~vw~~~a~~l~~~-~ 1797 (1924)
|.+.|++++...+.. ..|..++.+|.+.|++++|...|++++...+.. ..+|++++..+++. +
T Consensus 132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 211 (336)
T 1p5q_A 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211 (336)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444455555444433 788899999999999999999999999998877 69999999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI-RGLFE 1876 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~a-r~lfe 1876 (1924)
+++|...|++++...|.+ ..+|..+|.+++..|++++|+..|+++++..|++..+|..++.++.+.|++++| +.+|.
T Consensus 212 ~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 212 FSAAIESCNKALELDSNN--EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp HHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 689999999999999999999999999999999999999999999999999988 66777
Q ss_pred HHHh
Q 000176 1877 RAIS 1880 (1924)
Q Consensus 1877 ral~ 1880 (1924)
+++.
T Consensus 290 ~~~~ 293 (336)
T 1p5q_A 290 NMFE 293 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 134
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.90 E-value=9.5e-09 Score=105.06 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHhc-CH------HHHHHHHHHHHHhCCCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQ------EGVQAVVQRALLSLPRHKH------IKFISQTAILEFKNGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~------~~A~~l~~ral~~~p~~~~------~~~~~~~A~le~~~g~~e~Ar~lfe~aL~ 1846 (1924)
+.+++.|..|+..+.+. ++ ++.+++|+||+...|..++ +.+|..||.++ ..+|+++||.+|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Confidence 56888888888888877 66 8888999999988876432 57899999885 55899999999999998
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1847 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1847 ~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
.+.+..-+|..|++||+++|+..+||.++.+|+. +.|+..
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG--~~~k~~ 128 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE--RGAVPL 128 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCBCH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCCCcH
Confidence 8777788999999999999999999999999999 666555
No 135
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=6.1e-08 Score=99.06 Aligned_cols=132 Identities=19% Similarity=0.196 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1794 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~ 1794 (1924)
.|..+.......+ +.+.|...|+++++..+. ...|..++.++...+++++|...|++++...+....+|..++..+.
T Consensus 3 ~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQG--DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 5777777778888 569999999999998875 4889999999999999999999999999999999999999999999
Q ss_pred hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1795 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1795 ~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
.. ++++|...|++++...|.. ..+|..+|.++...|++++|...|++++...|..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99 9999999999999998876 5899999999999999999999999999998863
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.88 E-value=1.2e-07 Score=114.55 Aligned_cols=229 Identities=12% Similarity=0.066 Sum_probs=186.1
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHc-C-CCCHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY-G-NPPEE 1733 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~-e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~-g-~~~~e 1733 (1924)
.+++.+.++++|..+|++..+|..-.......+ .++++.+.++.+|...|.. ..+|.....+.... + .+ +
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn-----y~aW~hR~wlL~~l~~~~~--~ 142 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS-----YQVWHHRLLLLDRISPQDP--V 142 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHCCSCC--H
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhcCCCh--H
Confidence 678999999999999999999999999998888 5999999999999877743 35898877777766 5 55 7
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChH--------HHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C------
Q 000176 1734 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNK--------LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------ 1797 (1924)
Q Consensus 1734 ~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e--------~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~------ 1797 (1924)
++.+.++++++..|. ..+|....-++.+.+.++ ++.+.+++++...+.+..+|...+..+... .
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 889999999999886 499999999998888887 999999999999999999999998877666 5
Q ss_pred -HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhC------CC
Q 000176 1798 -QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA--------------------DRGRSMFEGILSEY------PK 1850 (1924)
Q Consensus 1798 -~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~--------------------e~Ar~lfe~aL~~~------Pk 1850 (1924)
++++.+.+.+++...|.+. .+|.....++.+.|.. +........++... +.
T Consensus 223 ~~~eELe~~~~aI~~~P~n~--SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNV--SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 7999999999999999984 8998888888777654 22222233332222 57
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000176 1851 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1896 (1924)
Q Consensus 1851 ~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl 1896 (1924)
...+|..+++++...|+.++|..+|+.+.. +..|-+. .+|.-.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~-~yw~~~~ 344 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRA-GYWEFRR 344 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGH-HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHH-HHHHHHH
Confidence 788999999999999999999999999775 5777666 4665443
No 137
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=4.2e-08 Score=118.10 Aligned_cols=185 Identities=9% Similarity=-0.021 Sum_probs=140.1
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC------CHHHHH
Q 000176 1721 FNLENEYGNPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQNKLADELLYKMIKKFKH------SCKVWL 1787 (1924)
Q Consensus 1721 l~le~~~g~~~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~------~~~vw~ 1787 (1924)
.+++...+ +.+.|...|++|+...+. -..|..++.+|...|++++|.+.|++++..+.. ....|.
T Consensus 43 ~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 120 (307)
T 2ifu_A 43 AVAFKNAK--QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120 (307)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556678 459999999999987532 268999999999999999999999999988632 245677
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 000176 1788 RRVQRLLKQQQEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------TDLWSI 1857 (1924)
Q Consensus 1788 ~~a~~l~~~~~~~A~~l~~ral~~~p~~~----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~------~dlw~~ 1857 (1924)
.++..+...++++|...|++|+...+... ...++..+|.++...|++++|...|++++...|+. ...|..
T Consensus 121 ~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 88877744499999999999999876532 24789999999999999999999999999986643 236777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1858 YLDQEIRLGDVDLIRGLFERAISLSLP---PKKMKFLFKKYLEYEKSVGEEERIEY 1910 (1924)
Q Consensus 1858 y~~le~k~gd~~~ar~lferal~~~~~---pk~~k~lw~~yl~~E~~~G~~~~~~~ 1910 (1924)
.+..+...|++++|+..|++++ .... .... .+....+... ..|+.+....
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~-~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDC-AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHH-HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHH-HHHHHHHHHH-HhcCHHHHHH
Confidence 7788888999999999999999 4321 1122 2233333322 3577665554
No 138
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.87 E-value=2.3e-10 Score=148.88 Aligned_cols=116 Identities=24% Similarity=0.530 Sum_probs=0.0
Q ss_pred EEEE-eeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecccccccchhcccccc
Q 000176 1375 VKNV-TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1453 (1924)
Q Consensus 1375 V~~v-~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~~~~~~~~ 1453 (1924)
|+.+ .+.|+||+++. +|.++++...+...+...+ +| . ....
T Consensus 582 I~~I~~~~G~~IdI~~--dg~v~I~~~~~~~~~~a~~--------------------~i---------~-------~i~~ 623 (723)
T 3cdi_A 582 IRALTEETGTTIEIED--DGTVKIAATDGEKAKHAIR--------------------RI---------E-------EITA 623 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeehhhCceEEecC--CccEEEecCCHHHHHHHHH--------------------HH---------H-------HHhh
Confidence 4455 45799999985 7888887655432221110 00 0 0135
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
++++|++|.|+|++|.+||+||+|.+ +++||+|+|++++.+++++.+.|++||.|+|+|+++|+ ++||+||+|+.
T Consensus 624 ~~~vG~i~~G~V~~i~~fGaFVel~~-g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~ 698 (723)
T 3cdi_A 624 EIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 698 (723)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred hhhcCcEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 78999999999999999999999987 89999999999999999999999999999999999997 99999999985
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.86 E-value=1.1e-08 Score=109.52 Aligned_cols=113 Identities=6% Similarity=-0.076 Sum_probs=105.3
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC
Q 000176 1738 VFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1815 (1924)
Q Consensus 1738 vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~ 1815 (1924)
.|++++...|.. ..|+.++..+.+.|++++|...|++++...|.++.+|+.++..+... ++++|...|++|+...|.+
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 366777777765 89999999999999999999999999999999999999999999999 9999999999999999988
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000176 1816 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1852 (1924)
Q Consensus 1816 ~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~ 1852 (1924)
. .+|..+|..+...|++++|+..|++++...|+..
T Consensus 104 ~--~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 Y--TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp C--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred c--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 4 8999999999999999999999999999999764
No 140
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.86 E-value=8.9e-10 Score=144.08 Aligned_cols=79 Identities=35% Similarity=0.605 Sum_probs=75.0
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
.+.++++|+++.|+|++|++||+||+|+. +++||||+|+|++.++.++.+.|++||.|+|+|++||.+++||+||+|.+
T Consensus 648 ~~~~l~vG~iv~G~V~~V~~fGaFV~l~~-~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~ 726 (785)
T 3bzc_A 648 SLKDLKPGMVLEGVVTNVTNFGAFVDIGV-HQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMS 726 (785)
T ss_dssp SSTTCCTTCBCCCEEEEEETTEEEEECSS-SSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSC
T ss_pred chhhcCCCCEEEEEEEEEecCCeEEEeCC-CcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecC
Confidence 47789999999999999999999999965 89999999999999999999999999999999999999999999999864
No 141
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.85 E-value=3.4e-08 Score=101.09 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=74.8
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000176 1669 RSSPNSSFVWIKYMAFMLSMADV------EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1742 (1924)
Q Consensus 1669 ~~~P~s~~~W~~y~~~~~~~~e~------dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferA 1742 (1924)
...|++++.|..|+......|+. ++.|++|+||+..+|+.. . ..|-.|+.+-.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--~--~~wrrYI~LWI----------------- 65 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--Y--GQNESFARIQV----------------- 65 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--G--TTCHHHHHHHH-----------------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--c--ccHHHHHHHHH-----------------
Confidence 45799999999999999988988 999999999999999752 1 24544444422
Q ss_pred HhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC
Q 000176 1743 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1815 (1924)
Q Consensus 1743 l~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~ 1815 (1924)
.||.+ ...++.++|+++|+.+++....-.++|+.||+|..++ +..+|+.++.+|+..+|..
T Consensus 66 -----------rYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 66 -----------RFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -----------HHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -----------HHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 22211 1123444555555555444334477777777777777 7777777777777776654
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=3.3e-08 Score=105.39 Aligned_cols=116 Identities=7% Similarity=-0.104 Sum_probs=93.4
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
..|++|+...|.. ..|+.++..+.+.|++++|...|++++...|.++.+|+.++..+... ++++|...|++++...|.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4577777777654 77888888888888888888888888888888888888888888888 888888888888888877
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1854 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl 1854 (1924)
+. .+|..+|.++...|++++|+..|++++...|++.+.
T Consensus 88 ~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EP--RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred Cc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 63 778888888888888888888888888887776544
No 143
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.83 E-value=2.9e-10 Score=131.62 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=73.6
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEEC--CCeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000176 758 HIHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~--~~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~~~~ 835 (1924)
.+++|+++.|+|++|+++|+||++. +++.||+|.|++++.++.++.+.|++||.|.|+|+++|++++++.||+|....
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~~~ 87 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTD 87 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTSCT
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEecch
Confidence 4678999999999999999999997 89999999999999999999999999999999999999999999999998753
No 144
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.83 E-value=6.8e-09 Score=115.04 Aligned_cols=77 Identities=25% Similarity=0.518 Sum_probs=68.8
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCcEEEEEEEEEecCCC-
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKR- 1521 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~-----------~~~~~~~~Gd~Vk~~Vl~id~e~~- 1521 (1924)
...+|+++.|+|+++.+||+||+|. .++||+|+|++++.++. +....|++||.|+++|+++|.+++
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~--~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 155 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLG--PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 155 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEc--CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCC
Confidence 4678999999999999999999996 49999999999988765 677899999999999999998765
Q ss_pred ----eeEEecccccc
Q 000176 1522 ----RISLGMKSSYF 1532 (1924)
Q Consensus 1522 ----ri~lslK~s~~ 1532 (1924)
||.||+|..++
T Consensus 156 p~~~~I~lS~k~~~L 170 (187)
T 1go3_E 156 KRGSKIALTMRQPYL 170 (187)
T ss_dssp ---CEEEEECCSTTC
T ss_pred CCccEEEEEEcCCCC
Confidence 99999998765
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.82 E-value=1.5e-08 Score=106.86 Aligned_cols=118 Identities=10% Similarity=-0.084 Sum_probs=89.0
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1737 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1737 ~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
..|++++...|.. ..|+.++..+.+.|++++|...|++++...|.++.+|+.++..+... ++++|...|++++...|.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3566666666654 67777888888888888888888888888888888888888888877 888888888888888877
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
+. .+|..+|.+++..|++++|...|++++...|.+...+.
T Consensus 85 ~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EP--RFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred Cc--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 63 67788888888888888888888888887776655443
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=3.2e-08 Score=108.23 Aligned_cols=117 Identities=10% Similarity=0.110 Sum_probs=71.0
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH-HHHcCCH--HHH
Q 000176 1762 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL-EFKNGVA--DRG 1837 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l-e~~~g~~--e~A 1837 (1924)
.+++++|...|++++...|.+..+|+.++..+... ++++|...|+++++..|.+ ..+|..+|.+ ++..|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN--AELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhcCCcchHHH
Confidence 45555666666666666666666666666666666 6666666666666666554 3566666666 5556665 666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1838 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
...|++++...|.+..+|..++.++...|+++.|...|++++.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666665
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.81 E-value=8.8e-08 Score=97.59 Aligned_cols=117 Identities=14% Similarity=0.014 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.++...+++++|...|++++...+.+..+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHHHHHH
Confidence 67888888899999999999999999988888899999999998888 9999999999999988876 57889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1868 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~ 1868 (1924)
+..|++++|...|++++...|.+..+|..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988999888888887764
No 148
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.81 E-value=4.8e-10 Score=150.06 Aligned_cols=81 Identities=11% Similarity=0.189 Sum_probs=0.4
Q ss_pred cccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCccc-ccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1451 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1451 ~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~-~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
...++++|++|.|+|++|.+||+||+|+. +++||||+|+|++.+ +.++.+.|++||.|+|+|++||.+++||+||||.
T Consensus 899 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 899 SEKTFFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cHHHhcCCCEEEEEEEEEccCeEEEEeCC-CcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 46899999999999999999999999975 899999999999998 8899999999999999999999999999999998
Q ss_pred ccc
Q 000176 1530 SYF 1532 (1924)
Q Consensus 1530 s~~ 1532 (1924)
+.+
T Consensus 978 ~dl 980 (1030)
T 3psf_A 978 HDV 980 (1030)
T ss_dssp ---
T ss_pred HHh
Confidence 644
No 149
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.80 E-value=5e-07 Score=122.56 Aligned_cols=149 Identities=10% Similarity=0.019 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC--------------
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-------------- 1814 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~-------------- 1814 (1924)
..|..++..+...|++++|...|.++ ..|.+++..+.+. ++++|.+.+.+|....+.
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence 34445555555555555555555553 2455555555555 555555555554221110
Q ss_pred ---------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCC
Q 000176 1815 ---------HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIRGLFERAISLSL 1883 (1924)
Q Consensus 1815 ---------~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~--gd~~~ar~lferal~~~~ 1883 (1924)
..|.+.+...+.+|...|.+++|..+||.+|...|.+..+|..++.++.+. +++..+..+|+..+. +
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin--i 1345 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--I 1345 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--c
Confidence 012345557777888999999999999999999999999999988888875 466677888888776 6
Q ss_pred Cc-----hhHHHHHHHHHHHHHHcCCHHHHH
Q 000176 1884 PP-----KKMKFLFKKYLEYEKSVGEEERIE 1909 (1924)
Q Consensus 1884 ~p-----k~~k~lw~~yl~~E~~~G~~~~~~ 1909 (1924)
++ .++ .+|..+.-+..++|+++.|.
T Consensus 1346 ~k~~r~~e~~-~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1346 PKVLRAAEQA-HLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred chHhHHHHHH-HHHHHHHHHHHhcccHHHHH
Confidence 65 566 68999999999999998776
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.80 E-value=5.4e-08 Score=99.87 Aligned_cols=116 Identities=10% Similarity=-0.050 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.++.+.+++++|...|++++...+.+..+|..++..+... ++++|...|+++++..|.. ..+|..+|.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHHHHHH
Confidence 67888888888888899999999888888888888888888888888 8888988999888888775 57888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1867 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd 1867 (1924)
+..|++++|+..|++++...|.+..+|..++.++.+.|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888889999999999888888888888888888776653
No 151
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.79 E-value=4.1e-08 Score=101.53 Aligned_cols=113 Identities=10% Similarity=-0.050 Sum_probs=103.0
Q ss_pred hcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1778 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1778 ~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
..|+....|...|..+++. ++++|...|++|++..|.+ ..+|..+|..++..|++++|...|++++...|++..+|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN--AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3456677899999999999 9999999999999999987 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 000176 1857 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1895 (1924)
Q Consensus 1857 ~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~y 1895 (1924)
.++..+...|++++|...|++++. +.|... ..+..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~-~a~~~l 121 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ--VDPSNE-EAREGV 121 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCcCCH-HHHHHH
Confidence 999999999999999999999999 777776 455443
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.79 E-value=1.2e-08 Score=124.67 Aligned_cols=155 Identities=10% Similarity=0.030 Sum_probs=134.9
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-------------HHHHHHHHHHH
Q 000176 1763 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------IKFISQTAILE 1828 (1924)
Q Consensus 1763 gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-------------~~~~~~~A~le 1828 (1924)
.++++|.+.|++++...+.....|..++..+++. ++++|...|++|+...|.... ..+|..+|.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777766667788999999999999 999999999999999988731 48999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
++.|++++|...|+++|...|++..+|+.++..+...|+++.|+..|++++. +.|... ..|..+.......|+.+.+
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~-~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNK-AAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 777777 5788888888888888777
Q ss_pred -HHHHHHHHHHHH
Q 000176 1909 -EYVKQKAMEYVE 1920 (1924)
Q Consensus 1909 -~~v~~rAle~v~ 1920 (1924)
+..|.+++..+.
T Consensus 284 ~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 284 EKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 567777776554
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.79 E-value=4.5e-08 Score=116.34 Aligned_cols=191 Identities=11% Similarity=-0.070 Sum_probs=152.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1750 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1750 (1924)
|++...|...+..+...|++++|...|++|++..|.. ..+|..+...+...+ +.++|...|++|++..|.. .
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~ 73 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALCYLKMQ--QPEQALADCRRALELDGQSVK 73 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHTTSCTTCHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHH
Confidence 6788999999999999999999999999999887753 357888888888999 5599999999999998874 8
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~-----~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
.|+.++.+|...|++++|...|++++...|++ ..+|..+. ..++...........+... .+...++
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~i~~~l~ 144 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-------IAKKKRWNSIEERRIHQES--ELHSYLT 144 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-------HHHHHHHHHHHHTCCCCCC--HHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhH--HHHHHHH
Confidence 99999999999999999999999999877643 33444331 2222333333334455553 5666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-GDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~-gd~~~ar~lferal~ 1880 (1924)
.+. .|++++|...|++++...|.+..++..+..++.+. +.+++|+.+|+++..
T Consensus 145 ~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 145 RLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 654 68999999999999999999888888887777776 678899999998875
No 154
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.78 E-value=7e-10 Score=143.38 Aligned_cols=77 Identities=31% Similarity=0.528 Sum_probs=0.0
Q ss_pred ccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1452 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1452 ~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
..++++|++|.|+|++|.+||+||+|.+ +++||||+|++++.++.++.+.|++||.|+|+|+++|+ ++||+||+|..
T Consensus 632 ~~~~~vG~v~~G~V~~I~~fGaFVel~~-g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~ 708 (726)
T 4aid_A 632 TDEAEVGKIYDGKVVKVVDFGAFVNFFG-AKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVV 708 (726)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hhhhcCCcEEEEEEEEEeccEEEEEECC-CcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeec
Confidence 4688999999999999999999999987 89999999999999999999999999999999999997 89999999984
No 155
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=8.9e-08 Score=107.72 Aligned_cols=129 Identities=11% Similarity=0.078 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C
Q 000176 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1719 ayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~ 1797 (1924)
.........+ +.++|...|++|+ .+...+|..++.+|...|++++|.+.|++++...+....+|+.++..+... +
T Consensus 11 ~~g~~~~~~~--~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 11 NEGVLAADKK--DWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhC--CHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 3334444445 2355555555553 223455555555555556666666666655555555555555555555555 5
Q ss_pred HHHHHHHHHHHHHhCCCCC--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1798 QEGVQAVVQRALLSLPRHK--------------HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~--------------~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
+++|...|++++...|... ...+|..+|.+++..|++++|...|++++...|+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 5556556666555555432 23455555555555555555555555555555554
No 156
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=7.2e-08 Score=116.05 Aligned_cols=190 Identities=9% Similarity=-0.005 Sum_probs=146.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HH
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIRE-ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KK 1750 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~e-e~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~ 1750 (1924)
.+.+..+...+++++|...|++|+...+... .......|.....++...+++ ++|...|++|++.... ..
T Consensus 40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~--~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM--PEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG--GGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3345667789999999999999997543211 112235666777777788854 9999999999987421 27
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh----HH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IK 1819 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~----~~ 1819 (1924)
.|..++.+|.. |++++|.+.|++++..++.. ..+|..++.++... ++++|...|++++...|.... ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 88999999998 99999999999999887532 67899999999999 999999999999998654421 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHHH
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTD-----LWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d-----lw~~y~~le~k~gd~~~ar~ 1873 (1924)
++...+.+++..|++++|+..|++++ ..|.... ++..++..+ ..|+.+.++.
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 78888889999999999999999999 8886432 233333332 5678776655
No 157
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.76 E-value=8.9e-09 Score=139.97 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=77.9
Q ss_pred hhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc-cCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeec
Q 000176 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438 (1924)
Q Consensus 1360 ~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~-~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~ 1438 (1924)
+++.++++|++|.|+|++|+++|+||+|+.+++|+||+|+|+|.+ +.+|.+.|++||.|+|+|++||.++++|.||+|.
T Consensus 895 et~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 895 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp CCTTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCH
T ss_pred CcHhhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecH
Confidence 456889999999999999999999999999999999999999998 8999999999999999999999999999999998
Q ss_pred ccc
Q 000176 1439 SDS 1441 (1924)
Q Consensus 1439 ~~~ 1441 (1924)
+..
T Consensus 975 ~dl 977 (1219)
T 3psi_A 975 HDV 977 (1219)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 158
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.76 E-value=1.3e-08 Score=113.59 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=71.5
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEec-------CceeEEeeccccCccccc--CcccccCCCcEEEEEEEEEecCCCeeE
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIEN-------TNLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRIS 1524 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~-------~~v~gl~h~sels~~~~~--~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ 1524 (1924)
.+++||+|.|+|++|.+||+||+|.. .++.|++|+||+++.+++ ++.+.|++||.|+|+|++++.+.+++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 57999999999999999999999852 267999999999999888 899999999999999999997778999
Q ss_pred Eecccccc
Q 000176 1525 LGMKSSYF 1532 (1924)
Q Consensus 1525 lslK~s~~ 1532 (1924)
||+|...+
T Consensus 158 LS~k~~~l 165 (209)
T 2nn6_I 158 LTTAENEL 165 (209)
T ss_dssp EECCSSSC
T ss_pred EEEecCCC
Confidence 99998544
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=1.4e-07 Score=96.74 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++..+.+.|++++|...|++++...|.++.+|..++..+... ++++|...|++++...|.+ ..+|..+|..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777 7777777777777777665 46777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEY------PKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~------Pk~~dlw~~y~~le~ 1863 (1924)
+..|++++|...|++++... |.+..+|..+.....
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 77777777777777777777 666666666655443
No 160
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.75 E-value=7.5e-07 Score=120.91 Aligned_cols=194 Identities=16% Similarity=0.105 Sum_probs=136.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHH
Q 000176 1672 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKV 1751 (1924)
Q Consensus 1672 P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i 1751 (1924)
.+++.+|.+|+..++..|++++|.+.|++|= + ...|...++...+.|. .++|.+.|..|.+..+...+
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKAd-------D---~say~eVa~~~~~lGk--yEEAIeyL~mArk~~~e~~I 1169 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-------D---PSSYMEVVQAANTSGN--WEELVKYLQMARKKARESYV 1169 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhcC-------C---hHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhcccccc
Confidence 5677777777777777777777777777761 1 1346666666667773 47777777777776655445
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
...++..|.+.+++++ .+.| ++ ..+..-|..+|..+... ++++|..+|.+| ..|...|..+.+
T Consensus 1170 dt~LafaYAKl~rlee-le~f---I~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAE-LEEF---IN--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVH 1233 (1630)
T ss_pred cHHHHHHHHhhcCHHH-HHHH---Hh--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHH
Confidence 5556777777766663 3333 21 23556788899999999 999999999996 478899999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHH------------------------------HHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1831 NGVADRGRSMFEGILSEYPKRTDLWS------------------------------IYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~~dlw~------------------------------~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.|+++.|...++++ .+...|. ..+.+|.+.|.++.|..+||.++.
T Consensus 1234 Lge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred hCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999999988 2234443 444556678888888888888887
Q ss_pred cCCCchhHHHHHHHHHHHHHH
Q 000176 1881 LSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1881 ~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
+.+..| .+|..+..+..+
T Consensus 1309 --LeraH~-gmftELaiLyaK 1326 (1630)
T 1xi4_A 1309 --LERAHM-GMFTELAILYSK 1326 (1630)
T ss_pred --cChhHh-HHHHHHHHHHHh
Confidence 666666 566444443333
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.75 E-value=2.5e-07 Score=93.34 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.++...+++++|.+.|++++..++....+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888888888 8888888888888887765 47888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
+..|++++|...|++++...|....+|..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888887777765543
No 162
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.74 E-value=2.3e-07 Score=99.36 Aligned_cols=135 Identities=10% Similarity=0.010 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000176 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
....|...+..++.. ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++..+|.+..+|..++.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 356788999999999 9999999999999999876 6899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000176 1861 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK--KYLEYEKSVGEEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1861 le~k~gd~~~ar~lferal~~~~~pk~~k~lw~--~yl~~E~~~G~~~~~~~v~~rAle~v~~ 1921 (1924)
.+...|+++.|...|++++. +.|... ..|. ..+......|+++.|...+.++.+....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVK--VKPHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 99999999999999999999 555555 3453 3333355678899999999998887654
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=1.8e-07 Score=93.48 Aligned_cols=111 Identities=13% Similarity=-0.080 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++..+...|++++|...|++++...+.+..+|..++..+... ++++|...|++++...|.+ ..+|..+|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777 7777777777777777664 46777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
...|++++|+..|++++...|.+..+|..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 7777777777777777777777777777666554
No 164
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=3.4e-08 Score=115.55 Aligned_cols=207 Identities=13% Similarity=0.034 Sum_probs=157.5
Q ss_pred hcCCCCchHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhcCC----cch-----------
Q 000176 1653 LEKDAPRTPDEFERLVRSSPNSSFVWIKY-------MAFMLSMADVEKARSIAERALQTINI----REE----------- 1710 (1924)
Q Consensus 1653 ~~~~~p~a~~~ferll~~~P~s~~~W~~y-------~~~~~~~~e~dkAr~v~eraL~~i~~----~ee----------- 1710 (1924)
...+..++...|.+++..+|...+.|+.+ ...+........+.-.+.|++..-|. +-.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 34557789999999999999999999999 46666666666777777777752221 000
Q ss_pred -hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHH
Q 000176 1711 -NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVW 1786 (1924)
Q Consensus 1711 -~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---~~vw 1786 (1924)
..+-.+|++|..+++..|. .++|.+.|++++...|....++.++.++.+.+++++|...|+.+... ++. ..+|
T Consensus 98 v~~r~dl~LayA~~L~~~g~--y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGN--YADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTC--HHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHHHHH
Confidence 0123588889999888994 48899999888877775558888888889999999999999866542 222 3578
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1787 LRRVQRLLKQ-QQEGVQAVVQRALLSL--PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1787 ~~~a~~l~~~-~~~~A~~l~~ral~~~--p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
+.++..+... ++++|...|++++... |.. ...+++.+|..+.++|+.++|+.+|++++...|. ..+|..+.+..+
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~ 252 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSY 252 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCC
Confidence 8888888888 9999999999888543 322 3578888888899999999999999999999998 888877766554
Q ss_pred H
Q 000176 1864 R 1864 (1924)
Q Consensus 1864 k 1864 (1924)
+
T Consensus 253 ~ 253 (282)
T 4f3v_A 253 R 253 (282)
T ss_dssp C
T ss_pred C
Confidence 3
No 165
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.73 E-value=1.9e-08 Score=110.62 Aligned_cols=77 Identities=27% Similarity=0.645 Sum_probs=66.8
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCcEEEEEEEEEecC---
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKE--- 1519 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~-----------~~~~~~~~~Gd~Vk~~Vl~id~e--- 1519 (1924)
+..+|++++|+|+++++||+||+++ .++||+|+|++++++. ++....|++||.|+++|+++|++
T Consensus 78 ~p~~Gev~~G~V~~v~~~G~fv~l~--~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~ 155 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNYGVFVNLG--PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTG 155 (180)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC----
T ss_pred eccCCCEEEEEEeeeccceEEEEEC--CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCc
Confidence 5678999999999999999999996 5899999999999876 45667899999999999999965
Q ss_pred -CCeeEEecccccc
Q 000176 1520 -KRRISLGMKSSYF 1532 (1924)
Q Consensus 1520 -~~ri~lslK~s~~ 1532 (1924)
..||.||||+.+.
T Consensus 156 ~~~rI~ls~k~~gL 169 (180)
T 4ayb_E 156 RLPRIALTMRQPYL 169 (180)
T ss_dssp ---CEEEECCSTTC
T ss_pred ccCcEEEEcCCCCC
Confidence 4599999999765
No 166
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=2.7e-08 Score=106.05 Aligned_cols=109 Identities=7% Similarity=-0.107 Sum_probs=103.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000176 1770 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1770 ~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
..|++++...|.+...|+.++..++.. ++++|...|++++...|.+ ..+|..+|..++..|++++|...|++++...
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 457888888888899999999999999 9999999999999999987 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1849 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1849 Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
|++..+|..++..+...|+++.|+..|++++.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=4.8e-08 Score=116.08 Aligned_cols=188 Identities=11% Similarity=-0.103 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1793 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l 1793 (1924)
..|....+.....| +.++|...|++|++..|. ..+|..++.+|...|++++|...|++++...+.+..+|+.+|..+
T Consensus 5 ~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGR--KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46777777777778 448888888888888775 478888888888888888888888888888888888888888888
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPRHKH---IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1869 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~~~~---~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~ 1869 (1924)
... ++++|...|++++...|.+.. ..+|..+. ..++...........|....++..+..+. .|+++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR--------IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH--------HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence 888 888888888888887765421 02232221 12222333333345666667777776654 68899
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV-GEEERIEYVKQKAME 1917 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~-G~~~~~~~v~~rAle 1917 (1924)
+|...|++++. +.|... .+......+..+. +.++.+..+|.+|.+
T Consensus 153 ~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDG-HIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGT--TTSCHH-HHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhc--cccchh-hhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999998 666655 4555555555554 557778888877643
No 168
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.71 E-value=7.7e-08 Score=105.14 Aligned_cols=140 Identities=11% Similarity=0.080 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhc-CH--HHHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR-LLKQ-QQ--EGVQAVVQ 1806 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~-l~~~-~~--~~A~~l~~ 1806 (1924)
.+.|...|+++++..|.. ..|..++.+|...|++++|...|++++...|.++.+|..++.. +... ++ ++|...|+
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~ 105 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMID 105 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 377899999999998864 9999999999999999999999999999999999999999999 6666 77 99999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1807 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1807 ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+++...|.+ ..+|..+|.+++..|++++|...|++++...|.+...+.... .+.+++.++.....
T Consensus 106 ~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------~i~~~~~~~~~~~~ 170 (177)
T 2e2e_A 106 KALALDSNE--ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE-------SINMAKLLQRRSDL 170 (177)
T ss_dssp HHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHhCCCc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH-------HHHHHHHhcCCCCC
Confidence 999999987 589999999999999999999999999999998766554332 23455666555443
No 169
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.70 E-value=6.9e-08 Score=112.89 Aligned_cols=199 Identities=7% Similarity=-0.123 Sum_probs=158.9
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHH-------HHHHHHcCCCCHHHHHHHHHHHHhcCCC-----------
Q 000176 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAY-------FNLENEYGNPPEEAVVKVFQRALQYCDP----------- 1748 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiay-------l~le~~~g~~~~e~a~~vferAl~~~~~----------- 1748 (1924)
+.++.+.|+..|.+++...|... ..|+.+ .......... ..+...+.+++...|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~-----Daw~g~~a~g~~~~~~L~~~~r~--~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESAC-----DAWIGRIRCGDTDRVTLFRAWYS--RRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHTTCCCHHHHHHHHHT--GGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred cCCCHHHHHHHHHHHHHhChhhh-----HHHHhHHHccCCcHHHHHHHHHH--HHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 46889999999999998877533 589988 4444444422 4566678888874431
Q ss_pred -----------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC
Q 000176 1749 -----------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1816 (1924)
Q Consensus 1749 -----------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~ 1816 (1924)
..+++.|+.++...|+|++|.++|+.++...|... .++..+..+++. ++++|...|+.++...+...
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 47889999999999999999999999988777667 888888888888 99999999997765321111
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000176 1817 HIKFISQTAILEFKNGVADRGRSMFEGILSEY--PK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1893 (1924)
Q Consensus 1817 ~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~--Pk-~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~ 1893 (1924)
...+++..|..+...|++++|...|++++... |. ..++|+.++..+.++|+.++|+.+|++++. ..|. . ..|.
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~-~-~~~~ 245 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE-P-KVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC-H-HHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-H-HHHH
Confidence 13589999999999999999999999998654 66 667999999999999999999999999999 6666 4 4665
Q ss_pred HHHH
Q 000176 1894 KYLE 1897 (1924)
Q Consensus 1894 ~yl~ 1897 (1924)
...+
T Consensus 246 aL~~ 249 (282)
T 4f3v_A 246 ALKD 249 (282)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 5543
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=1.5e-07 Score=101.65 Aligned_cols=108 Identities=10% Similarity=-0.073 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.+|.+.+++++|.+.|++++...+.+..+|+.++..++.. ++++|...|++++...|.+ ..+|..+|.++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 67888888999999999999999999999999999999999999988 9999999999999998876 58899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~ 1859 (1924)
+..|++++|+..|++++...|++...|....
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999998877665544
No 171
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.70 E-value=4.4e-07 Score=115.53 Aligned_cols=137 Identities=12% Similarity=0.027 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHh----CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---hc-CHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPK-KVHLALLGLYERT----EQNKLADELLYKMIKKFKHSCKVWLRRVQRLL---KQ-QQEGVQA 1803 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~-~i~~~l~~i~~~~----gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~---~~-~~~~A~~ 1803 (1924)
++|...|++|+...+.. ..|+.++.+|... .++++|...|+++. +.++..|+.++.+++ .. ++++|..
T Consensus 196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 44555555555554443 3445555555433 45555555555555 345555555555432 12 5555555
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 000176 1804 VVQRALLSLPRHKHIKFISQTAILEFKNG-----VADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGL 1874 (1924)
Q Consensus 1804 l~~ral~~~p~~~~~~~~~~~A~le~~~g-----~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k----~gd~~~ar~l 1874 (1924)
.|++++... +...+..+|.+++ .| ++++|...|++++ |.+...+..++.++.. ..++++|..+
T Consensus 273 ~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 273 YLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 555555332 2345555555554 33 5555555555555 5555555555555443 2255555555
Q ss_pred HHHHHh
Q 000176 1875 FERAIS 1880 (1924)
Q Consensus 1875 feral~ 1880 (1924)
|+++..
T Consensus 345 ~~~Aa~ 350 (452)
T 3e4b_A 345 LLTAAR 350 (452)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555554
No 172
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.69 E-value=3.4e-08 Score=104.19 Aligned_cols=114 Identities=10% Similarity=-0.014 Sum_probs=102.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000176 1770 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1770 ~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
..|++++...|.+...|+.++..++.. ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++...
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--ARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456677777777888999999999999 9999999999999999987 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1849 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1849 Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
|.+..+|..++..+...|+++.|...|++++. +.|..
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 119 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARA--LAAAQ 119 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHTC
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 99999999999999999999999999999998 44433
No 173
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.69 E-value=4.4e-07 Score=102.87 Aligned_cols=176 Identities=7% Similarity=-0.041 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRA 1808 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~----~~~~A~~l~~ra 1808 (1924)
.+|...|++|++. .....++.++.+|...+++++|...|++++.. .++..|+.++.++... ++++|...|++|
T Consensus 3 ~eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKA 79 (212)
T ss_dssp -CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3467788888876 44678888888888888888999999888875 5788888888887766 788888888888
Q ss_pred HHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 000176 1809 LLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIR----LGDVDLIRGLFERA 1878 (1924)
Q Consensus 1809 l~~~p~~~~~~~~~~~A~le~~----~g~~e~Ar~lfe~aL~~~Pk--~~dlw~~y~~le~k----~gd~~~ar~lfera 1878 (1924)
++. . +...+..+|.+++. .+++++|..+|++++...|. ....+..++.++.. .+++++|..+|+++
T Consensus 80 ~~~--g--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA--G--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT--T--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC--C--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 754 2 36788888888886 77888999999988887763 47788888888888 77888899999988
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Q 000176 1879 ISLSLPPKKMKFLFKKYLEYEKSVG-----EEERIEYVKQKAMEY 1918 (1924)
Q Consensus 1879 l~~~~~pk~~k~lw~~yl~~E~~~G-----~~~~~~~v~~rAle~ 1918 (1924)
+.. +.... ..+..-.-++...| |.+.|...|++|.+.
T Consensus 156 ~~~--~~~~~-a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 156 SSL--SRTGY-AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHT--SCTTH-HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHc--CCCHH-HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 883 21111 22222223344444 788888888888764
No 174
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.69 E-value=6e-09 Score=136.39 Aligned_cols=82 Identities=33% Similarity=0.574 Sum_probs=77.7
Q ss_pred hhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeec
Q 000176 1359 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438 (1924)
Q Consensus 1359 ~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~ 1438 (1924)
+..+.++++|+++.|+|++|+++|+||+|+.+++|+||+|+|+|.|+.+|.+.|++||.|+|+|+++|.++++|.||+|.
T Consensus 646 ve~~~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~ 725 (785)
T 3bzc_A 646 VESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRM 725 (785)
T ss_dssp CCSSTTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSS
T ss_pred ccchhhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEec
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cc
Q 000176 1439 SD 1440 (1924)
Q Consensus 1439 ~~ 1440 (1924)
..
T Consensus 726 ~~ 727 (785)
T 3bzc_A 726 SD 727 (785)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 175
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.68 E-value=6.9e-07 Score=101.24 Aligned_cols=175 Identities=10% Similarity=-0.099 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----ChHHH
Q 000176 1693 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE----QNKLA 1768 (1924)
Q Consensus 1693 kAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~g----k~e~A 1768 (1924)
+|...|+++.+.-+ ...|..+..++...+ +.++|...|++|++. .....++.++.+|.. + ++++|
T Consensus 4 eA~~~~~~aa~~g~-------~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEAGD-------RRAQYYLADTWVSSG--DYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHTTC-------HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHCCC-------HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 45566777775422 234555556656667 569999999999986 346889999999988 6 89999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh----c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHH
Q 000176 1769 DELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRS 1839 (1924)
Q Consensus 1769 ~~~fe~~lk~~~~~~~vw~~~a~~l~~----~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~----~g~~e~Ar~ 1839 (1924)
...|++++.. .++..++.++.++.. . ++++|...|++|+...+...++.++..+|.++.. .+++++|..
T Consensus 73 ~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 73 RQLAEKAVEA--GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999999864 689999999999987 5 9999999999999876543346899999999998 889999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhc
Q 000176 1840 MFEGILSEYPKRTDLWSIYLDQEIRL-G-----DVDLIRGLFERAISL 1881 (1924)
Q Consensus 1840 lfe~aL~~~Pk~~dlw~~y~~le~k~-g-----d~~~ar~lferal~~ 1881 (1924)
.|++++.. |.+...+..++.++..- | ++++|..+|++++..
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 99999988 66677888899988764 3 899999999999983
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.68 E-value=4.3e-06 Score=100.51 Aligned_cols=221 Identities=9% Similarity=-0.020 Sum_probs=169.6
Q ss_pred HHcCCHH-HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCC---C-----CHHHHHHHHHHHHhcCCC-HHHHHHH
Q 000176 1686 LSMADVE-KARSIAERALQTINIREENEKLNIWVAYFNLENEYGN---P-----PEEAVVKVFQRALQYCDP-KKVHLAL 1755 (1924)
Q Consensus 1686 ~~~~e~d-kAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~---~-----~~e~a~~vferAl~~~~~-~~i~~~l 1755 (1924)
.+.+++. +|...++++|...|.. ..+|...-.+....+. + ..+++...++.++..+|. ..+|...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~-----ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR 114 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDF-----ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 114 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTC-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh-----HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3456554 7999999999766632 3578765554444331 0 036778889999998886 5999999
Q ss_pred HHHHHHhCC--hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C-HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000176 1756 LGLYERTEQ--NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1831 (1924)
Q Consensus 1756 ~~i~~~~gk--~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~-~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~ 1831 (1924)
..++...++ ++++.+.+.+++...+.+..+|...+-.+... . ++++.+.+.+++...|.+ ..+|...+.+....
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N--~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHh
Confidence 999999885 89999999999999999999999998777776 5 699999999999999988 48999998888766
Q ss_pred --------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCch
Q 000176 1832 --------------GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-----------GDVDLIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1832 --------------g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~-----------gd~~~ar~lferal~~~~~pk 1886 (1924)
+.++++...+.+++..+|.+..+|+.+--++.+. +-.+++...|+.++. +.|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd 270 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPE 270 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTT
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcc
Confidence 4588999999999999999999998776666554 346789999999998 6776
Q ss_pred hHHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 000176 1887 KMKFLFKKYLEYEKS---VGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1887 ~~k~lw~~yl~~E~~---~G~~~~~~~v~~rAl 1916 (1924)
.. ..+...+.+... .|..+++...+++.+
T Consensus 271 ~~-w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 271 NK-WCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp CH-HHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred cc-hHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 64 344444443322 455666666665554
No 177
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.8e-07 Score=94.52 Aligned_cols=112 Identities=7% Similarity=-0.051 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000176 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
....|...+..++.. ++++|...|++++...|.. ..+|..+|..++..|++++|...|++++...|++...|..++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 456799999999999 9999999999999999987 5899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHH
Q 000176 1861 QEIRLGDVDLIRGLFERAISLSLP------PKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1861 le~k~gd~~~ar~lferal~~~~~------pk~~k~lw~~yl~~ 1898 (1924)
.+...|+++.|...|++++. +. |... .+|..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~p~~~-~~~~~l~~~ 121 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART--KDAEVNNGSSAR-EIDQLYYKA 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHH-HHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH--hCcccCCchhHH-HHHHHHHHH
Confidence 99999999999999999998 55 5554 455554443
No 178
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=2.6e-07 Score=94.74 Aligned_cols=119 Identities=10% Similarity=-0.030 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1858 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y 1858 (1924)
+.....|+.++..+... ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++...|.+..+|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD--AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 35678899999999999 9999999999999998876 68999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcC
Q 000176 1859 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG 1903 (1924)
Q Consensus 1859 ~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G 1903 (1924)
+..+.+.|+++.|+..|++++. ..|... ..|..+.......|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~--~~p~~~-~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALD--LDSSCK-EAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCGGGT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH--hCCCch-HHHHHHHHHHHHhc
Confidence 9999999999999999999998 666665 46666666555444
No 179
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=5.9e-07 Score=100.92 Aligned_cols=125 Identities=8% Similarity=-0.090 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~ 1829 (1924)
.|+.++..+...|++++|.+.|++++ +.++.+|+.++..+... ++++|...|++++...|.. ..+|..+|.+++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHH
Confidence 36778889999999999999999996 34789999999999999 9999999999999999876 689999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1830 KNGVADRGRSMFEGILSEYPKRT----------------DLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~aL~~~Pk~~----------------dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..|++++|...|++++...|.+. .+|..++..+.+.|+++.|...|++++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999888766 8999999999999999999999999998
No 180
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.65 E-value=4.3e-08 Score=96.34 Aligned_cols=85 Identities=31% Similarity=0.402 Sum_probs=67.4
Q ss_pred CCCCCEEEEEEEEE---eeceEEEEeCC-CcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccc
Q 000176 1365 LSPNMIVQGYVKNV---TSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1440 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v---~~~G~fV~l~~-~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~ 1440 (1924)
...++.++|+|+.. ..+| |+.... +.++|||+++|.+...
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~----------------------------------- 54 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA----------------------------------- 54 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC-----------------------------------
T ss_pred ccccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc-----------------------------------
Confidence 34678899999988 4478 887654 5899999999987521
Q ss_pred ccccchhccccccccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc
Q 000176 1441 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1496 (1924)
Q Consensus 1441 ~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~ 1496 (1924)
....+++|++|++.|+++.+||+||+|.+ +++||||+|+|+|.++
T Consensus 55 ----------~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~-~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 55 ----------VRGNPQQGDRVEGKIKSITDFGIFIGLDG-GIDGLVHLSDISWAQA 99 (101)
T ss_dssp ----------CCCCCCTTCEEEEEEEECCSEEEEECTTS-CEEEEEEEEEEEECCC
T ss_pred ----------cccCCCCCCEEEEEEEEeCCcEEEEEcCC-CceEEEEHHHCccCcC
Confidence 02457899999999999999999999976 7999999999999765
No 181
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.64 E-value=7.2e-10 Score=144.73 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=38.5
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccC----CCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeec
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNL----SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~sel----sd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~ 1438 (1924)
.++++|+++.|+|+++.++|+||+|.++++|+||+|++ +|.|+.++.+.|++||.|+++|+++|+ ++||.||+|+
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~ 741 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPVI 741 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCS-SCC-------
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCCEEEEEec
Confidence 35789999999999999999999999999999999999 999999999999999999999999998 9999999999
Q ss_pred ccccccch
Q 000176 1439 SDSRTASQ 1446 (1924)
Q Consensus 1439 ~~~~~~~~ 1446 (1924)
...+||..
T Consensus 742 ~~~~pw~~ 749 (757)
T 1e3p_A 742 EGEEAASD 749 (757)
T ss_dssp --------
T ss_pred CCCCchhh
Confidence 98887754
No 182
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.64 E-value=1.3e-06 Score=111.04 Aligned_cols=169 Identities=12% Similarity=0.018 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTE---QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQEGVQAV 1804 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~~i~~~l~~i~~~~g---k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-----~~~~A~~l 1804 (1924)
+.+...++.|....+. .++.++.+|...| ++++|...|+++....+.....|+.++.++... ++++|...
T Consensus 162 ~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 162 DDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 4455566666665554 8999999999999 999999999999999888999889999988754 89999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHH
Q 000176 1805 VQRALLSLPRHKHIKFISQTAIL-E--FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-----DVDLIRGLFE 1876 (1924)
Q Consensus 1805 ~~ral~~~p~~~~~~~~~~~A~l-e--~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g-----d~~~ar~lfe 1876 (1924)
|+++. |.+ ..++..+|.+ + ...+++++|..+|++++.. .+...+..++.++. .| ++++|..+|+
T Consensus 240 ~~~aa---~g~--~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 240 LEKIA---PGY--PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHG---GGS--THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHc---CCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 99998 555 4899999998 4 4678999999999999854 47889999998887 56 9999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHH-HHH---cCCHHHHHHHHHHHHH
Q 000176 1877 RAISLSLPPKKMKFLFKKYLEY-EKS---VGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1877 ral~~~~~pk~~k~lw~~yl~~-E~~---~G~~~~~~~v~~rAle 1917 (1924)
+++ .. .. ..+.....+ +.. ..|.+.+...|++|.+
T Consensus 312 ~Aa-~g----~~-~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 312 KAV-GR----EV-AADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp TTT-TT----CH-HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHh-CC----CH-HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 988 22 22 122222233 222 2288888888888764
No 183
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=7.4e-07 Score=106.24 Aligned_cols=164 Identities=6% Similarity=-0.058 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC-----
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHS----- 1782 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~----- 1782 (1924)
..|...+......+ +.++|.+.|+++++..+.. ..+..++.+|...|++++|...|++++......
T Consensus 76 ~~l~~~~~~~~~~~--~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 76 KQFKDQVIMLCKQK--RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 45666666667778 4589999999999876542 345567777888889999999999998765322
Q ss_pred -HHHHHHHHHHHHhc-CHHHHHHHHHHHH---HhCCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q 000176 1783 -CKVWLRRVQRLLKQ-QQEGVQAVVQRAL---LSLPRHKH--IKFISQTAILEFKNGVADRGRSMFEGILSEYPK----- 1850 (1924)
Q Consensus 1783 -~~vw~~~a~~l~~~-~~~~A~~l~~ral---~~~p~~~~--~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk----- 1850 (1924)
..+|..+|..+... ++++|...|++|+ +..|.... +.++..+|.+++..|++++|...|++++...++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 56888999999888 9999999999999 55555432 258889999999999999999999999876533
Q ss_pred -CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 000176 1851 -RTDLWSIYLDQEIRLGDVDLI-RGLFERAIS 1880 (1924)
Q Consensus 1851 -~~dlw~~y~~le~k~gd~~~a-r~lferal~ 1880 (1924)
...+|...+..+.+.|++++| ...|++|+.
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 256788889999999999999 888998886
No 184
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=2.7e-07 Score=103.04 Aligned_cols=127 Identities=11% Similarity=-0.017 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC----------------KVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~----------------~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
..|..++..+...+++++|...|++++...+..+ .+|..++..++.. ++++|...|++++...
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 5577777888888888888888888888776665 8899999999988 9999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 000176 1813 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR-GLFERA 1878 (1924)
Q Consensus 1813 p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar-~lfera 1878 (1924)
|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..+..++...++..++. ..|.++
T Consensus 119 p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 119 KNN--VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred ccc--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 5899999999999999999999999999999999999999988888777666554 444443
No 185
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.63 E-value=6.2e-07 Score=89.44 Aligned_cols=113 Identities=11% Similarity=0.004 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000176 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
....|+.++..+... ++++|...|++++...|.+ ..+|..+|.+++..|+++.|...|++++...|.+..+|..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 456889999999999 9999999999999999876 6899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000176 1861 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1861 le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E 1899 (1924)
.+...|+++.|+..|++++. ..|... ..|..+..++
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK--HEANNP-QLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TCTTCH-HHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH--cCCCCH-HHHHHHHHhh
Confidence 99999999999999999998 667666 5676665554
No 186
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.62 E-value=5.7e-08 Score=106.10 Aligned_cols=72 Identities=21% Similarity=0.384 Sum_probs=66.0
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecC---------ceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEE
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENT---------NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1525 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~---------~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~l 1525 (1924)
.+ ||+|.|+|++|.++|+||+|..- ++.|++|+|++++.+++++.+.|++||.|+|+|++ +++.|
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~L 129 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLRL 129 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTEE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEEE
Confidence 36 99999999999999999999751 68999999999999999999999999999999998 89999
Q ss_pred ecccccc
Q 000176 1526 GMKSSYF 1532 (1924)
Q Consensus 1526 slK~s~~ 1532 (1924)
|+|...+
T Consensus 130 S~k~~~l 136 (179)
T 3m7n_A 130 STKEEEM 136 (179)
T ss_dssp ECCSTTC
T ss_pred EEecCCC
Confidence 9998544
No 187
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=1.2e-06 Score=104.37 Aligned_cols=176 Identities=11% Similarity=0.015 Sum_probs=138.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000176 1670 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV-AYFNLENEYGNPPEEAVVKVFQRALQYCDP 1748 (1924)
Q Consensus 1670 ~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWi-ayl~le~~~g~~~~e~a~~vferAl~~~~~ 1748 (1924)
.+|.....|...+..+...+++++|.+.++++++..+...+......|. ....+....+ +.++|...|++|+.....
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~ 147 (293)
T 2qfc_A 70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHTTCCC
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhc
Confidence 3456667788888889999999999999999998766432222122232 3334444556 459999999999976432
Q ss_pred -------HHHHHHHHHHHHHhCChHHHHHHHHHHHHh---cCCCH----HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1749 -------KKVHLALLGLYERTEQNKLADELLYKMIKK---FKHSC----KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1749 -------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~---~~~~~----~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
..+|..++.+|...|++++|...|++++.. .+... .+|++++..+... ++++|...|++|+...+
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 268999999999999999999999999943 44432 6899999999999 99999999999998754
Q ss_pred CC----ChHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 000176 1814 RH----KHIKFISQTAILEFKNGVADRG-RSMFEGILSE 1847 (1924)
Q Consensus 1814 ~~----~~~~~~~~~A~le~~~g~~e~A-r~lfe~aL~~ 1847 (1924)
.. ....++...|.+++..|++++| ...|++++..
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 31 1257899999999999999999 8889999864
No 188
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.61 E-value=7.1e-08 Score=104.98 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=62.2
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCc----------ccccCCCcEEEEEEEEEecCCC--
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI----------ETIYRAGEKVKVKILKVDKEKR-- 1521 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~----------~~~~~~Gd~Vk~~Vl~id~e~~-- 1521 (1924)
...+|++++|+|+++++||+||+|.+ .+||+|+|+|++.+.-+. .+.|++||.|+++|+++|.+.+
T Consensus 80 ~~~~Gev~~G~V~~v~~fG~FV~l~~--~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~ 157 (171)
T 1y14_B 80 KPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157 (171)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETT--EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEE
T ss_pred cCCCCCEEEEEEEEEecCEEEEEecC--eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCCCc
Confidence 34689999999999999999999964 999999999986533111 2679999999999999998874
Q ss_pred -eeEEecccccc
Q 000176 1522 -RISLGMKSSYF 1532 (1924)
Q Consensus 1522 -ri~lslK~s~~ 1532 (1924)
+|. |||+.+.
T Consensus 158 ~~ig-sm~~~~L 168 (171)
T 1y14_B 158 HAIG-SIKEDYL 168 (171)
T ss_dssp EEEE-ECCSTTC
T ss_pred EEEE-EcCCCCC
Confidence 555 7776544
No 189
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.61 E-value=3.4e-07 Score=94.92 Aligned_cols=98 Identities=14% Similarity=0.074 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000176 1781 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859 (1924)
Q Consensus 1781 ~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~ 1859 (1924)
.....|+.++..++.. ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++...|.+..+|..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3444455555555555 5555555555555554443 345555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 000176 1860 DQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1860 ~le~k~gd~~~ar~lferal~ 1880 (1924)
..+...|+++.|...|++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555554
No 190
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.61 E-value=2e-07 Score=95.56 Aligned_cols=93 Identities=6% Similarity=-0.050 Sum_probs=44.9
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000176 1786 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1864 (1924)
Q Consensus 1786 w~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k 1864 (1924)
|+..+..+++. ++++|...|+++++..|.+ ..+|..+|.++...|++++|...|++++...|++..+|..++..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444444444 4444444444444444443 34444444444444455555555555554455444444444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 000176 1865 LGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~ 1880 (1924)
.|++++|+..|++++.
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555555555554444
No 191
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=3.5e-07 Score=95.83 Aligned_cols=111 Identities=11% Similarity=-0.061 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
..|..++..+...+++++|.+.|++++...+.+ ..+|+.++..+... ++++|...|++++...|.+ ..+|..+|
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a 106 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHHHH
Confidence 555566666666666666666666666555544 55566666666655 6666666666666665544 45666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000176 1826 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le 1862 (1924)
.+++..|++++|+..|++++...|++.++|..+..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666666666666666666666666666665555443
No 192
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=5.4e-07 Score=93.37 Aligned_cols=115 Identities=14% Similarity=-0.056 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000176 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1827 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~l 1827 (1924)
-..|..++..+...|++++|...|++++...+.+..+|+.++..+... ++++|...|++++...|.. ..+|..+|.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh--HHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999 9999999999999999886 6899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 000176 1828 EFKNGVADRGRSMFEGILSEYPK-----RTDLWSIYLDQEIRL 1865 (1924)
Q Consensus 1828 e~~~g~~e~Ar~lfe~aL~~~Pk-----~~dlw~~y~~le~k~ 1865 (1924)
++..|++++|...|++++...|+ ...+|..+.....+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 667777776665443
No 193
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.59 E-value=1e-06 Score=89.53 Aligned_cols=119 Identities=13% Similarity=0.020 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000176 1781 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859 (1924)
Q Consensus 1781 ~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~ 1859 (1924)
.....|..++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN--AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 4567899999999999 9999999999999999876 589999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000176 1860 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1904 (1924)
Q Consensus 1860 ~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~ 1904 (1924)
.++...|+++.|...|++++. ..|... ..|..+.......|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~--~~p~~~-~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALE--LDPDNE-TYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHh--cCccch-HHHHHHHHHHHHHhc
Confidence 999999999999999999999 666666 577777766666554
No 194
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.59 E-value=6.1e-08 Score=108.23 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=64.1
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCc----------ccccCCCcEEEEEEEEEecCCC--
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI----------ETIYRAGEKVKVKILKVDKEKR-- 1521 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~----------~~~~~~Gd~Vk~~Vl~id~e~~-- 1521 (1924)
...+|+++.|+|++|++||+||+|++ ++||+|+|+|++.+.-+. .+.|++||.|+++|+++|.+.+
T Consensus 80 ~p~vGev~~G~V~~vt~fG~FVelg~--~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i 157 (215)
T 2b8k_G 80 KPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157 (215)
T ss_dssp CCCTTEEEEEEEEEEETTEEEEECTT--SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEE
T ss_pred ccCCCCEEEEEEEEEecceEEEEecC--cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCcc
Confidence 34799999999999999999999964 899999999987643222 2679999999999999998875
Q ss_pred -eeEEecccccc
Q 000176 1522 -RISLGMKSSYF 1532 (1924)
Q Consensus 1522 -ri~lslK~s~~ 1532 (1924)
+|. |||+.+.
T Consensus 158 ~~Ig-Smk~~~L 168 (215)
T 2b8k_G 158 HAIG-SIKEDYL 168 (215)
T ss_dssp EEEE-ECCSTTC
T ss_pred EEEE-EcCCCCC
Confidence 777 8888655
No 195
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.59 E-value=8.7e-08 Score=107.06 Aligned_cols=150 Identities=11% Similarity=-0.020 Sum_probs=116.8
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh--------------HHHH
Q 000176 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH--------------IKFI 1821 (1924)
Q Consensus 1757 ~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~--------------~~~~ 1821 (1924)
......+.+++|.+.|+.....-......|...+..++.. ++++|...|++++...|.... ..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344456666666666655544445677899999999999 999999999999999887641 3799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1822 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1822 ~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
..+|.+++..|++++|...|++++...|.+..+|..++..+...|+++.|...|++++. +.|... .+|..+......
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~ 168 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNL-DIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 666666 577777766666
Q ss_pred cCCHHHHH
Q 000176 1902 VGEEERIE 1909 (1924)
Q Consensus 1902 ~G~~~~~~ 1909 (1924)
.++..++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 55554443
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.58 E-value=9.8e-08 Score=121.71 Aligned_cols=129 Identities=10% Similarity=0.011 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---------------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---------------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
..|..++..|.+.+++++|...|++++...+.. ..+|++++..+++. ++++|...|++||...|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 677888888999999999999999999888777 68999999999999 99999999999999998
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 000176 1814 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR-GLFERAIS 1880 (1924)
Q Consensus 1814 ~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar-~lferal~ 1880 (1924)
.+ ..+|..+|..++..|++++|+..|+++++..|++..+|..++.++.+.++++++. .+|.+++.
T Consensus 349 ~~--~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 349 AN--EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 86 6899999999999999999999999999999999999999999999988887653 45555443
No 197
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.58 E-value=5.9e-09 Score=139.64 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=0.9
Q ss_pred hhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc-cCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeec
Q 000176 1360 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1438 (1924)
Q Consensus 1360 ~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~-~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~ 1438 (1924)
+.+.++++|++|.|+|++|+++|+||.|+.+++|+||+|+|+|.| +.+|.+.|++||.|+|+|++||.+++||.||+|.
T Consensus 898 et~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 898 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ccHHHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 455789999999999999999999999999999999999999998 8999999999999999999999999999999998
Q ss_pred ccc
Q 000176 1439 SDS 1441 (1924)
Q Consensus 1439 ~~~ 1441 (1924)
+..
T Consensus 978 ~dl 980 (1030)
T 3psf_A 978 HDV 980 (1030)
T ss_dssp ---
T ss_pred HHh
Confidence 664
No 198
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.58 E-value=2.6e-06 Score=102.77 Aligned_cols=221 Identities=10% Similarity=-0.019 Sum_probs=171.3
Q ss_pred HcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh-C-
Q 000176 1687 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERT-E- 1763 (1924)
Q Consensus 1687 ~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~-g- 1763 (1924)
...-.++|.+.++++|...|.. ..+|.....+....+. ..+++.+.++++++.+|. ..+|.....++... +
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~-----ytaWn~R~~iL~~l~~-~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAH-----YTVWQYRFSLLTSLNK-SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS
T ss_pred hCCCCHHHHHHHHHHHHhCchh-----HHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence 3344578999999999876642 3589888777777774 268999999999999987 49999999999988 7
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHH--------HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-
Q 000176 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQE--------GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV- 1833 (1924)
Q Consensus 1764 k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~--------~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~- 1833 (1924)
+++++.+.+++++..++.+..+|....-.+.+. .++ ++.+.++++++..|.+ ..+|...+.+....+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N--~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN--NSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcccc
Confidence 899999999999999999999999887766665 555 8999999999999988 4899999999988886
Q ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhcC----C
Q 000176 1834 ------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV--------------------DLIRGLFERAISLS----L 1883 (1924)
Q Consensus 1834 ------~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~--------------------~~ar~lferal~~~----~ 1883 (1924)
++++...+.+++..+|.+..+|+.+..++.+.|.. .........++... .
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 79999999999999999999999888887776654 22222222222211 0
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1884 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1884 ~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
.++.. ..+.-.++.....|+.++|..+|+...
T Consensus 298 ~~~s~-~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 298 PLPVP-LALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 12223 456666666677899888888887764
No 199
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.58 E-value=1.2e-07 Score=105.07 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=70.2
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-----------CCCccCCCCcEEEEEEEEEeCCCC--
Q 000176 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLSK-- 1430 (1924)
Q Consensus 1364 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~-----------~~~~~f~~G~~V~~kVl~vd~e~~-- 1430 (1924)
...+|+++.|+|++++++|+||+|++ .+|++|++++++.+.. ++...|++||.|+++|+++|.+.+
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p 156 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERK 156 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC---
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCC
Confidence 35689999999999999999999986 9999999999988764 678899999999999999998755
Q ss_pred ---EEEEEeeccccccc
Q 000176 1431 ---RVEVTLKTSDSRTA 1444 (1924)
Q Consensus 1431 ---ri~LSlk~~~~~~~ 1444 (1924)
+|.||++.....+.
T Consensus 157 ~~~~I~lS~k~~~LG~~ 173 (187)
T 1go3_E 157 RGSKIALTMRQPYLGKL 173 (187)
T ss_dssp --CEEEEECCSTTCEEH
T ss_pred CccEEEEEEcCCCCCcH
Confidence 99999998765543
No 200
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.58 E-value=4.7e-08 Score=120.50 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=42.7
Q ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000176 1656 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1735 (1924)
Q Consensus 1656 ~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a 1735 (1924)
+..+|.+.|++. +.+.+|..++..+++.+++++|.+.|.++-.. ..|...++.....|.+ ++|
T Consensus 18 ~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~----------~~y~~V~~~ae~~g~~--EeA 80 (449)
T 1b89_A 18 NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP----------SSYMEVVQAANTSGNW--EEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH----------HHHHHHHHHHHhCCCH--HHH
Confidence 366777777777 33469999999999999999999999876421 1344444445556744 777
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC
Q 000176 1736 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1814 (1924)
Q Consensus 1736 ~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~ 1814 (1924)
...++.+.+..++..+...++..|.+.|+++++.+.|+. .+...|...|..+... ++++|+.+|.++
T Consensus 81 i~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 81 VKYLQMARKKARESYVETELIFALAKTNRLAELEEFING------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC------C----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 777877777544445666666677777776666665542 2334666666666666 666666666655
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000176 1815 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872 (1924)
Q Consensus 1815 ~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar 1872 (1924)
..|..+|..+.+.|+++.|...|+++ .++..|...+......|+++.|.
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHH
Confidence 24666666666666666666666666 24555555544444444444443
No 201
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.56 E-value=8.1e-08 Score=123.07 Aligned_cols=168 Identities=11% Similarity=0.024 Sum_probs=131.2
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1830 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~ 1830 (1924)
|..++..|.+.|++++|.+.|+++++..+....+|..++..+.+. ++++|.+.|++|++..|.. ..+|..+|..++.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Confidence 445566777889999999999999999999999999999999999 9999999999999998876 5899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcC---CC---ch--hHH
Q 000176 1831 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ--EIRLGDVDLIRGLFE-----------RAISLS---LP---PK--KMK 1889 (1924)
Q Consensus 1831 ~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l--e~k~gd~~~ar~lfe-----------ral~~~---~~---pk--~~k 1889 (1924)
.|++++|...|+++++..|++..+|..++.. +.+.|++++|..+|+ +++... .. +. -..
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl 166 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTI 166 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccH
Confidence 9999999999999999999998898888877 778899999999999 666521 00 11 011
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHh
Q 000176 1890 FLFKKYLEYEKSVG--EEERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1890 ~lw~~yl~~E~~~G--~~~~~~~v~~rAle~v~~ 1921 (1924)
..+..++......+ ..+.+..++.+|.+.+..
T Consensus 167 ~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 167 SFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp HHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 34445555444433 466777889999888765
No 202
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.56 E-value=1.9e-06 Score=99.40 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc-CCHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK-----NGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRL-GDVD 1869 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~-----~g~~e~Ar~lfe~aL~~~Pk~-~dlw~~y~~le~k~-gd~~ 1869 (1924)
....|+.+++||++..|...+-.+|..+|.+|.+ -|+.++|+.+|+++|+.+|+. .+.+..|++++... |+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4788999999999999997556799999999998 499999999999999999975 99999999999885 9999
Q ss_pred HHHHHHHHHHhcCCCch
Q 000176 1870 LIRGLFERAISLSLPPK 1886 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk 1886 (1924)
.++.+|++|+. .+|.
T Consensus 258 ~a~~~L~kAL~--a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALA--IDPE 272 (301)
T ss_dssp HHHHHHHHHHH--CCGG
T ss_pred HHHHHHHHHHc--CCCC
Confidence 99999999999 6665
No 203
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.56 E-value=1.6e-06 Score=102.75 Aligned_cols=202 Identities=11% Similarity=0.080 Sum_probs=153.1
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000176 1660 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1739 (1924)
Q Consensus 1660 a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vf 1739 (1924)
+...|++++...+.+...+...+..+...|++++|.+++.+++...|. ...+..+...+.+++..+ +.+.|++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~---~~~lea~~l~vqi~L~~~--r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA---EGTTELLLLAIEVALLNN--NVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS---TTHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---cCcHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 678899988776677778888888899999999999999999865441 234568888889999999 669999999
Q ss_pred HHHHhcCC-----CHHHHHHHHHH--HHHhC--ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 000176 1740 QRALQYCD-----PKKVHLALLGL--YERTE--QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1809 (1924)
Q Consensus 1740 erAl~~~~-----~~~i~~~l~~i--~~~~g--k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral 1809 (1924)
+++.+..| ...+...++.. ....| ++.+|..+|+.+...|++.......|. .++++ ++++|+..++.++
T Consensus 160 ~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 99988887 35555555543 33344 899999999999999886222222232 56677 9999999999877
Q ss_pred HhCCC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1810 LSLPR--------HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1810 ~~~p~--------~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+..|. ..++.++.+.+.+.+..|+ .|..+++++.+..|++.-+.. +......|++++.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d-----------~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH-----------HQEIDAKFDELVR 304 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH-----------HHHHHHHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH-----------HHHHHHHHHHHHH
Confidence 76432 2347888888888888887 889999999999999865422 2234466777776
No 204
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=1.3e-06 Score=104.03 Aligned_cols=126 Identities=8% Similarity=-0.035 Sum_probs=54.4
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC---CC--ChHHHHH
Q 000176 1755 LLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP---RH--KHIKFIS 1822 (1924)
Q Consensus 1755 l~~i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p---~~--~~~~~~~ 1822 (1924)
++.+|...+++++|...|++++...... ..+|..+|.++... ++++|...|++|++... .. ....++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 3344444444555555555554432111 22344444444444 55555555555443211 11 1123444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 000176 1823 QTAILEFKNGVADRGRSMFEGILSEYPKR------TDLWSIYLDQEIRLG-DVDLIRGLFERAIS 1880 (1924)
Q Consensus 1823 ~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~------~dlw~~y~~le~k~g-d~~~ar~lferal~ 1880 (1924)
.+|.+++..|++++|...|++++...++. ..+|...+..+.+.| ++++|...|++|+.
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 44445555555555555555554433221 334444444444444 23444444444443
No 205
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=6.1e-07 Score=93.91 Aligned_cols=119 Identities=15% Similarity=0.072 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1857 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~ 1857 (1924)
+.....|+..+..++.. ++++|..+|++++...|.+. ...+|..+|..++..|++++|...|++++...|++..+|..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 56789999999999999 99999999999999988641 15899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1858 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1858 y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
++..+...|+++.|...|++++. +.|... .+|..+..+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS--LEPKNK-VFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSCH-HHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCCCcH-HHHHHHHHHHhh
Confidence 99999999999999999999999 667666 577777666543
No 206
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.55 E-value=1.1e-06 Score=89.83 Aligned_cols=112 Identities=7% Similarity=0.091 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKHSC---KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAI 1826 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~---~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-~~~~~~~A~ 1826 (1924)
++.++..+...|++++|...|+++++.+|.++ .+|+.++..+... ++++|...|++++...|.+.. ..++..+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 56667777788888888888888888777666 6788888888777 888888888888888776532 366777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1827 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1827 le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
.++..|++++|+..|++++..+|+....+.....+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 8888888888888888888888877766655554443
No 207
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=6.3e-07 Score=96.70 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000176 1781 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1859 (1924)
Q Consensus 1781 ~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~ 1859 (1924)
.....|+.++..++.. ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++...|++..+|..++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN--PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3567899999999999 9999999999999999987 689999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1860 DQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1860 ~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
..+...|+++.|...|++++. +.|...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~--~~p~~~ 113 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE--AEGNGG 113 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HHSSSC
T ss_pred HHHHHccCHHHHHHHHHHHHH--hCCCch
Confidence 999999999999999999998 555444
No 208
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=1.7e-06 Score=87.10 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
...|+.++..+... ++++|..+|++++...|.. ..+|..+|..++..|++++|..+|++++...|.+..+|..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 67899999999999 9999999999999998876 58999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000176 1862 EIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1862 e~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E 1899 (1924)
+...|+++.|...|++++. ..|... ..+..+....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE--LDPNNA-EAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH--hCCCcH-HHHHHHHHHH
Confidence 9999999999999999998 566655 3454444443
No 209
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.54 E-value=8.3e-08 Score=122.38 Aligned_cols=149 Identities=9% Similarity=-0.000 Sum_probs=120.7
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-------------HHHHHHHHHHHH
Q 000176 1764 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------IKFISQTAILEF 1829 (1924)
Q Consensus 1764 k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-------------~~~~~~~A~le~ 1829 (1924)
++++|.+.|+.++...+.....|..++..+++. ++++|...|++|++..|.... ..+|..+|.+++
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556678899999999999 999999999999999988631 589999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 000176 1830 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1909 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~ 1909 (1924)
+.|++++|...|+++|..+|++..+|+.++..+...|+++.|+..|++|+. +.|... ..|..+..+....|+.+.+.
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~-~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNK-AARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 777776 57777777777777766554
Q ss_pred -HHHHHH
Q 000176 1910 -YVKQKA 1915 (1924)
Q Consensus 1910 -~v~~rA 1915 (1924)
..|.++
T Consensus 406 ~~~~~~~ 412 (457)
T 1kt0_A 406 RRIYANM 412 (457)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 334433
No 210
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.53 E-value=1.3e-07 Score=103.18 Aligned_cols=75 Identities=16% Similarity=0.341 Sum_probs=62.2
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccC------------cccccCCCcEEEEEEEEEecCCC-
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN------------IETIYRAGEKVKVKILKVDKEKR- 1521 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~------------~~~~~~~Gd~Vk~~Vl~id~e~~- 1521 (1924)
-.+|+++.|+|+++++||+||+|. .++||+|+|+|++.+.-+ -...|++||.|+++|+++|.+.+
T Consensus 79 ~~~Gev~~G~V~~v~~fG~fV~l~--~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 156 (172)
T 2c35_B 79 PFKGEVVDAVVTQVNKVGLFTEIG--PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKND 156 (172)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEET--TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTE
T ss_pred CCCCCEEEEEEEEEeCCEEEEEEC--CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCC
Confidence 358999999999999999999995 577999999998653311 14579999999999999998876
Q ss_pred --eeEEecccccc
Q 000176 1522 --RISLGMKSSYF 1532 (1924)
Q Consensus 1522 --ri~lslK~s~~ 1532 (1924)
+|. |||+.+.
T Consensus 157 ~~~ig-sm~~~~L 168 (172)
T 2c35_B 157 IFAIG-SLMDDYL 168 (172)
T ss_dssp EEEEE-ECCSTTC
T ss_pred cEEEE-EecCCCC
Confidence 676 8887554
No 211
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=9.2e-07 Score=91.36 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh-----HHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-----IKFISQ 1823 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~-----~~~~~~ 1823 (1924)
..|..+++.|.+.|++++|.+.|++++...|.+..+|..++..++.. ++++|...|+++++..|.... ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35667788888888888888888888888888888888888888888 888888888888877664321 246777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1824 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1824 ~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
+|.++...|++++|...|+++|...|+ .++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 777788888888888888888877765 34433
No 212
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.52 E-value=5.4e-07 Score=92.30 Aligned_cols=102 Identities=10% Similarity=-0.006 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|+.++..+.+.|++++|...|+++++..|.+..+|+.++..+... ++++|...|++++...|.+ ..+|..+|.++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--IAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 45888999999999999999999999999999999999999999999 9999999999999999987 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
...|++++|+..|+++++..|...+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999997654
No 213
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.52 E-value=1.1e-08 Score=132.25 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
.++++|+++.|+|+++.++|+||+|.++++|+||+|+++|.++.++.+.|++||.|+++|+++|+ ++||.||+|.....
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~~~~ 711 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVVDQE 711 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeecccC
Confidence 56899999999999999999999999999999999999999999999999999999999999997 89999999998776
Q ss_pred cc
Q 000176 1443 TA 1444 (1924)
Q Consensus 1443 ~~ 1444 (1924)
++
T Consensus 712 ~G 713 (726)
T 4aid_A 712 TG 713 (726)
T ss_dssp --
T ss_pred cc
Confidence 54
No 214
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.51 E-value=1.2e-07 Score=115.75 Aligned_cols=146 Identities=10% Similarity=0.000 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1794 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~ 1794 (1924)
..|....+.....+++ +.|...|++|++..+....|.. .+++.++...+ ...+|++++..++
T Consensus 180 ~~~~~~g~~~~~~g~~--~~A~~~y~~Al~~~p~~~~~~~-------~~~~~~~~~~l---------~~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKL--EEAMQQYEMAIAYMGDDFMFQL-------YGKYQDMALAV---------KNPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCC--HHHHHHHHHHHHHSCHHHHHTC-------CHHHHHHHHHH---------HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhccchhhhh-------cccHHHHHHHH---------HHHHHHHHHHHHH
Confidence 5677777777777855 9999999999998876543221 22222322221 1248899999999
Q ss_pred hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHH
Q 000176 1795 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI-RLGDVDLIR 1872 (1924)
Q Consensus 1795 ~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~-k~gd~~~ar 1872 (1924)
+. ++++|...|+++|...|.+ ..+|..+|..++..|++++|+..|+++++..|.+..+|..+..+.. ..+..+.++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKN--PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 9999999999999998876 5899999999999999999999999999999999889888887744 456778888
Q ss_pred HHHHHHHh
Q 000176 1873 GLFERAIS 1880 (1924)
Q Consensus 1873 ~lferal~ 1880 (1924)
.+|.+++.
T Consensus 320 ~~~~~~l~ 327 (338)
T 2if4_A 320 EMYKGIFK 327 (338)
T ss_dssp --------
T ss_pred HHHHHhhC
Confidence 99999887
No 215
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.50 E-value=1.6e-06 Score=103.24 Aligned_cols=167 Identities=11% Similarity=0.030 Sum_probs=129.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHH
Q 000176 1680 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA-YFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKV 1751 (1924)
Q Consensus 1680 ~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWia-yl~le~~~g~~~~e~a~~vferAl~~~~~-------~~i 1751 (1924)
..+..+...+++++|...++++++..+...+......|.. ...+....+ +.+.|...|++|+..... ..+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3466678899999999999999986554333222222433 344444445 459999999999985432 157
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC----hHH
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFK-------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HIK 1819 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~-------~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~----~~~ 1819 (1924)
|..++.+|...|++++|...|+++++.+. ....+|++++..+... ++++|...|++|++..+... -..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999999999999999999996432 2355889999999999 99999999999998764431 257
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 000176 1820 FISQTAILEFKNGV-ADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~-~e~Ar~lfe~aL~~~ 1848 (1924)
+|...|..++..|+ +++|...|++++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 89999999999994 699999999998653
No 216
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.49 E-value=1e-06 Score=89.66 Aligned_cols=113 Identities=10% Similarity=-0.016 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC--h---HHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--H---IKFISQ 1823 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~--~---~~~~~~ 1823 (1924)
..|..++.++...+++++|...|++++...+.+..+|+.++..+... ++++|...|++++...|... + ..+|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45777777777788888888888888877777777888888777777 88888888888877765431 1 467777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000176 1824 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1863 (1924)
Q Consensus 1824 ~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~ 1863 (1924)
+|..++..|+++.|...|++++...| +.++|..+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 77777788888888888888887777 4666666655544
No 217
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.49 E-value=7.4e-07 Score=95.92 Aligned_cols=112 Identities=9% Similarity=-0.059 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKK------------------FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1810 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~------------------~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~ 1810 (1924)
..|...++.+.+.|++++|...|++++.. .+....+|++++..++.. ++++|...|++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 56777888888888888888888888876 444556777777777777 77777777777777
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 000176 1811 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-DLWSIYLDQEI 1863 (1924)
Q Consensus 1811 ~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~-dlw~~y~~le~ 1863 (1924)
..|.+ ..+|...|..++..|++++|...|++++...|++. .++..+..+..
T Consensus 92 ~~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 92 REETN--EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred cCCcc--hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 77765 57777777777777777777777777777777776 45555544443
No 218
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.48 E-value=1.5e-07 Score=107.54 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=68.4
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcc----cccCcccccCCCcEEEEEEEEEecCCCeeEEeccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED----HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1529 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~----~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~ 1529 (1924)
..++||+|.|+|+++.++|+||.|+. ...|++|+|++++. +..++.+.|++||.|.|+|++++. .+++.||+|.
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~-~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~LS~k~ 140 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLLTVQG 140 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEEEEEec
Confidence 46899999999999999999999965 79999999999873 456788899999999999999995 5699999988
Q ss_pred ccc
Q 000176 1530 SYF 1532 (1924)
Q Consensus 1530 s~~ 1532 (1924)
..+
T Consensus 141 ~~l 143 (235)
T 2z0s_A 141 EGL 143 (235)
T ss_dssp SSC
T ss_pred ccC
Confidence 655
No 219
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.46 E-value=8.7e-07 Score=109.52 Aligned_cols=137 Identities=14% Similarity=-0.027 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1794 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~ 1794 (1924)
..|....+.....+ +.++|...|++|++..+... +...++...+..+....+|++++..++
T Consensus 224 ~~~~~~g~~~~~~g--~~~~Ai~~y~kAl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQ--NWEMAIKKYTKVLRYVEGSR-----------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHH-----------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhhcCc-----------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777 44888888888876533210 001122222234456788999999998
Q ss_pred hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000176 1795 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1872 (1924)
Q Consensus 1795 ~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar 1872 (1924)
+. ++++|...|++|++..|.+ ..+|..+|..++..|++++|+..|+++++..|.+..+|..++.++.+.++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSN--TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88 9999999999999988876 5889999999999999999999999999999999999998888888777766554
No 220
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.45 E-value=2.1e-08 Score=130.69 Aligned_cols=83 Identities=19% Similarity=0.371 Sum_probs=0.0
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeeccccc
Q 000176 1363 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1442 (1924)
Q Consensus 1363 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~~~~ 1442 (1924)
.++++|+++.|+|+++.++|+||+|.++++|+||+|+++|.|+.++.+.|++||.|+++|+++|+ ++||.||+|.....
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~ 701 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQ 701 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEeccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999997 99999999988766
Q ss_pred ccch
Q 000176 1443 TASQ 1446 (1924)
Q Consensus 1443 ~~~~ 1446 (1924)
|+.+
T Consensus 702 ~g~~ 705 (723)
T 3cdi_A 702 SQPA 705 (723)
T ss_dssp ----
T ss_pred CCcc
Confidence 5443
No 221
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.45 E-value=2.2e-06 Score=111.70 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=140.1
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD----------VEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1726 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e----------~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~ 1726 (1924)
.++|.+.|++++..+|+++.+|..-.......+. +++|.+.++++++..|.. ..+|.....+...
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-----y~aW~hR~w~l~~ 119 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----YGTWHHRCWLLSR 119 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Confidence 7788999999999999999999998888877776 888889999998776643 2578887777777
Q ss_pred cCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhC-ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--------
Q 000176 1727 YGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTE-QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-------- 1796 (1924)
Q Consensus 1727 ~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~g-k~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-------- 1796 (1924)
++.++.+++.+.+++|++..+. ...|.....++...+ .++++.+.++++++..+.+..+|...+..+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 7733337888888999888876 488888888888888 788888888888888888888888888777651
Q ss_pred -------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000176 1797 -------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1836 (1924)
Q Consensus 1797 -------~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~ 1836 (1924)
.+++|.+.+.+|+...|.+. .+|..++.++.+.+.+++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~--saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCS--HHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCc--cHHHHHHHHHhcCCCccc
Confidence 46888888888888888875 788888887777776554
No 222
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.45 E-value=1.7e-07 Score=115.60 Aligned_cols=230 Identities=10% Similarity=0.011 Sum_probs=122.4
Q ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcc-h---------------hhH-----
Q 000176 1655 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE-E---------------NEK----- 1713 (1924)
Q Consensus 1655 ~~~p~a~~~ferll~~~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~e-e---------------~ek----- 1713 (1924)
++.++|.+.|.++ .++..|...+..+.+.|++++|+..++.+.+..+... + .+.
T Consensus 46 g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~p 120 (449)
T 1b89_A 46 GMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP 120 (449)
T ss_dssp --------------------------------------------------------------------CHHHHTTTTTCC
T ss_pred CCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCC
Confidence 3477777777663 3455777777777778888888887777776432100 0 000
Q ss_pred -HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1714 -LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1792 (1924)
Q Consensus 1714 -l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~ 1792 (1924)
...|...++.....|.+ ++|...|.++ ..|..++..+.+.|++++|.+.|.++ .++..|...+..
T Consensus 121 n~~a~~~IGd~~~~~g~y--eeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~a 186 (449)
T 1b89_A 121 NNAHIQQVGDRCYDEKMY--DAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA 186 (449)
T ss_dssp ----------------CT--TTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCH--HHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHH
Confidence 02444444444455544 6666666665 46788888888888888888888888 377888888888
Q ss_pred HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHH
Q 000176 1793 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVD 1869 (1924)
Q Consensus 1793 l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~--gd~~ 1869 (1924)
+... +++.|...... |.. |++-......+|.+.|.+++|..+|+.+|...+....+|..++.++.+. +...
T Consensus 187 Cv~~~ef~lA~~~~l~-L~~-----~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ 260 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLH-IVV-----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 260 (449)
T ss_dssp HHHTTCHHHHHHTTTT-TTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCcHHHHHHHHHH-HHh-----CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 8888 88888554443 222 2344445777888999999999999999999999999999999988865 3555
Q ss_pred HHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPP-----KKMKFLFKKYLEYEKSVGEEERIEYVK 1912 (1924)
Q Consensus 1870 ~ar~lferal~~~~~p-----k~~k~lw~~yl~~E~~~G~~~~~~~v~ 1912 (1924)
....+|...+. +|+ .++ .+|..+.-+...+++++.|....
T Consensus 261 ehl~~~~~~in--i~k~~~~~~~~-~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 261 EHLELFWSRVN--IPKVLRAAEQA-HLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHSTTSC--HHHHHHHHHTT-TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhc--CcHHHHHHHHH-HHHHHHHHHHHhhchHHHHHHHH
Confidence 66667766554 666 566 68999999999999998765443
No 223
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.44 E-value=4.8e-07 Score=99.43 Aligned_cols=79 Identities=27% Similarity=0.363 Sum_probs=67.4
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-----------CCCCccCCCCcEEEEEEEEEeCC----
Q 000176 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-----------ESPEKEFPIGKLVAGRVLSVEPL---- 1428 (1924)
Q Consensus 1364 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~-----------~~~~~~f~~G~~V~~kVl~vd~e---- 1428 (1924)
...+|+++.|.|++++++|+||++++ .+|++|++++++++. ++....|++||.|++||+++|.+
T Consensus 78 ~p~~Gev~~G~V~~v~~~G~fv~l~~-~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~ 156 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNYGVFVNLGP-MDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGR 156 (180)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC-----
T ss_pred eccCCCEEEEEEeeeccceEEEEECC-ccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCcc
Confidence 35689999999999999999999984 899999999999875 46777899999999999999864
Q ss_pred CCEEEEEeecccccc
Q 000176 1429 SKRVEVTLKTSDSRT 1443 (1924)
Q Consensus 1429 ~~ri~LSlk~~~~~~ 1443 (1924)
..||.||+|+.-..+
T Consensus 157 ~~rI~ls~k~~gLG~ 171 (180)
T 4ayb_E 157 LPRIALTMRQPYLGK 171 (180)
T ss_dssp --CEEEECCSTTCEE
T ss_pred cCcEEEEcCCCCCCC
Confidence 458999999865544
No 224
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.43 E-value=3.4e-07 Score=102.13 Aligned_cols=78 Identities=13% Similarity=0.179 Sum_probs=71.3
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEEC--------CCeEEEecCCccCccccc--CcccCCCCCCEEEEEEEEeeCCCCeEE
Q 000176 758 HIHPNSVVHGYVCNIIETGCFVRFL--------GRLTGFAPRSKAVDGQRA--DLSKTYYVGQSVRSNILDVNSETGRIT 827 (1924)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~--------~~l~Glv~~s~~s~~~~~--~~~~~f~~Gq~V~~~V~~id~~~~r~~ 827 (1924)
..++|+++.|.|++|+++|+||++. .++.|++|++++++.+.. ++.+.|++||.|.|+|++++.+++++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 4678999999999999999999974 578999999999988887 899999999999999999998888999
Q ss_pred Eeeccccc
Q 000176 828 LSLKQSCC 835 (1924)
Q Consensus 828 lSlk~~~~ 835 (1924)
||+|....
T Consensus 158 LS~k~~~l 165 (209)
T 2nn6_I 158 LTTAENEL 165 (209)
T ss_dssp EECCSSSC
T ss_pred EEEecCCC
Confidence 99998754
No 225
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.41 E-value=3.9e-06 Score=109.43 Aligned_cols=158 Identities=11% Similarity=0.050 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhCC----------hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---C
Q 000176 1732 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQ----------NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---Q 1797 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~~-~i~~~l~~i~~~~gk----------~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~---~ 1797 (1924)
.++|.+.+++|+..+|.. .+|.....++...++ +++|.+.|++++..+|.+..+|...+-.+.+. +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 478999999999999984 999999999999888 99999999999999999999999998888776 4
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----------- 1865 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g-~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~----------- 1865 (1924)
+++|.+.+.+|++..|.+ ..+|...+.+....| .++++.+.+++++..+|.+..+|.....++.+.
T Consensus 125 ~~~el~~~~k~l~~d~~N--~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhcccc--ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 599999999999999988 479999999999999 899999999999999999999999988887774
Q ss_pred ---CCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000176 1866 ---GDVDLIRGLFERAISLSLPPKKMKFLFKK 1894 (1924)
Q Consensus 1866 ---gd~~~ar~lferal~~~~~pk~~k~lw~~ 1894 (1924)
+.++++.+.+.+|+. ..|... ..|.-
T Consensus 203 ~~~~~~~eel~~~~~ai~--~~P~~~-saW~y 231 (567)
T 1dce_A 203 LPENVLLKELELVQNAFF--TDPNDQ-SAWFY 231 (567)
T ss_dssp SCHHHHHHHHHHHHHHHH--HCSSCS-HHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--hCCCCc-cHHHH
Confidence 456889999999998 555554 35543
No 226
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.40 E-value=3.1e-07 Score=105.32 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=69.8
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc---cCcccccCCCcEEEEEEEEEecCCCeeEEecccc
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV---DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1530 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~---~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s 1530 (1924)
..++||+|.|+|+++.++|+||+|.. ...|++|+|++++.+. .++.+.|++||.|.|+|++++. .+++.||+|..
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~-~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~LS~r~~ 148 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKGK 148 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCST
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCC-CeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEEEEccc
Confidence 45899999999999999999999975 7999999999998777 7788999999999999999995 47999999986
Q ss_pred cc
Q 000176 1531 YF 1532 (1924)
Q Consensus 1531 ~~ 1532 (1924)
.+
T Consensus 149 ~l 150 (251)
T 2je6_I 149 DL 150 (251)
T ss_dssp TC
T ss_pred cC
Confidence 55
No 227
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=9.5e-07 Score=87.27 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 000176 1781 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSI 1857 (1924)
Q Consensus 1781 ~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk--~~dlw~~ 1857 (1924)
.+..+|+.++..+... ++++|...|+++++..|.. ..+|..+|.+++..|++++|...|++++...|. ...+|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE--SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 4455566666666666 6666666666666666554 356666666666666666666666666666666 6666666
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHh
Q 000176 1858 YLDQEIRL-GDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1858 y~~le~k~-gd~~~ar~lferal~ 1880 (1924)
++..+.+. |++++|...|++++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 66666666 666666666666665
No 228
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=4.1e-06 Score=92.85 Aligned_cols=150 Identities=10% Similarity=-0.036 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHhc-CHHHHH
Q 000176 1731 PEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQ 1802 (1924)
Q Consensus 1731 ~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~------~~~~vw~~~a~~l~~~-~~~~A~ 1802 (1924)
+.+.|++.++........ ..+|..++.+|...|++++|...|++++..+. ....+|..++..+... ++++|.
T Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (203)
T 3gw4_A 7 DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86 (203)
T ss_dssp CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 347777755544442212 37888889999999999999999999888542 3356778888888888 999999
Q ss_pred HHHHHHHHh---CCCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHH
Q 000176 1803 AVVQRALLS---LPRH--KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--R----TDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1803 ~l~~ral~~---~p~~--~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk--~----~dlw~~y~~le~k~gd~~~a 1871 (1924)
..|++++.. .+.. ....++..+|..++..|++++|+..|++++...+. . ..++..++..+...|++++|
T Consensus 87 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 999998887 3322 22456888888888889999999999998865422 1 12457778888888999999
Q ss_pred HHHHHHHHh
Q 000176 1872 RGLFERAIS 1880 (1924)
Q Consensus 1872 r~lferal~ 1880 (1924)
+..|++++.
T Consensus 167 ~~~~~~al~ 175 (203)
T 3gw4_A 167 QQHWLRARD 175 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988887
No 229
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.38 E-value=5.3e-06 Score=84.76 Aligned_cols=102 Identities=10% Similarity=0.017 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYL 1859 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~---~dlw~~y~ 1859 (1924)
.|+..+..++.. ++++|...|++++...|.+. ...+|..+|..++..|++++|...|++++..+|++ .++|..++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467888888888 99999999999999999874 12689999999999999999999999999999998 88899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1860 DQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1860 ~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
..+...|+++.|+..|++++. ..|...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~--~~p~~~ 110 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT--QYPGSD 110 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--HCCCCh
Confidence 999999999999999999998 555554
No 230
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=1.4e-06 Score=85.93 Aligned_cols=102 Identities=12% Similarity=-0.051 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.++...+++++|...|++++...+....+|..++..+... ++++|...|+++++..|...+..+|..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999 99999999999999998822368999999999
Q ss_pred HHc-CCHHHHHHHHHHHHHhCCCC
Q 000176 1829 FKN-GVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1829 ~~~-g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
... |++++|...|++++...|..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 999 99999999999999998864
No 231
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=4.4e-06 Score=92.61 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=118.4
Q ss_pred HHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHcCCH
Q 000176 1760 ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH----KHIKFISQTAILEFKNGVA 1834 (1924)
Q Consensus 1760 ~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~----~~~~~~~~~A~le~~~g~~ 1834 (1924)
...|++++|.+.++.+.........+|..++..+... ++++|...|++++...... ....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 3568888888866555443345678888999888888 9999999999998854322 1246788889999999999
Q ss_pred HHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHHHHcCC
Q 000176 1835 DRGRSMFEGILSE---YPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAISL---SLPPKKMKFLFKKYLEYEKSVGE 1904 (1924)
Q Consensus 1835 e~Ar~lfe~aL~~---~Pk~----~dlw~~y~~le~k~gd~~~ar~lferal~~---~~~pk~~k~lw~~yl~~E~~~G~ 1904 (1924)
++|...|++++.. .++. ..+|..++..+...|++++|+..|++++.. ...+...-..+..........|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999999887 4533 345778888888999999999999998862 11111111335566667778899
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000176 1905 EERIEYVKQKAMEYVES 1921 (1924)
Q Consensus 1905 ~~~~~~v~~rAle~v~~ 1921 (1924)
.+.+...+++|++..+.
T Consensus 163 ~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988765
No 232
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.37 E-value=1.8e-07 Score=101.68 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=63.6
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCc----------ccccCCCcEEEEEEEEEecCC---
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI----------ETIYRAGEKVKVKILKVDKEK--- 1520 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~----------~~~~~~Gd~Vk~~Vl~id~e~--- 1520 (1924)
...+|++++|+|+++++||+||+|+ .++||+|+|+|++.+.-+. ...|++||.|+++|+++|.+.
T Consensus 81 ~p~~Gev~~G~V~~v~~fG~FV~l~--~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~ 158 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNKMGFFANIG--PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEI 158 (172)
T ss_dssp CCCTTCEEECCCCEEETTEEECCBT--TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCE
T ss_pred ccCCCCEEEEEEEEEEcceEEEEeC--CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCc
Confidence 4568999999999999999999996 4789999999987644332 468999999999999999987
Q ss_pred CeeEEecccccc
Q 000176 1521 RRISLGMKSSYF 1532 (1924)
Q Consensus 1521 ~ri~lslK~s~~ 1532 (1924)
.+|. |||+.|.
T Consensus 159 ~~Ig-tm~~~~L 169 (172)
T 3h0g_G 159 FAIA-TMKEDYL 169 (172)
T ss_dssp EEEE-ECCSTTC
T ss_pred eEEE-EcCCCCC
Confidence 4666 8887654
No 233
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.35 E-value=4.5e-06 Score=89.69 Aligned_cols=115 Identities=11% Similarity=0.065 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC--------CC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL--------PR--------HKHIKFISQTAILEFKNGVADRGRSMFEGIL 1845 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~--------p~--------~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL 1845 (1924)
...|...|..+++. ++++|...|++|+..+ |. .....+|..+|..+++.|++++|...|+++|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 56788889999999 9999999999999982 21 1235799999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000176 1846 SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1846 ~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E 1899 (1924)
...|.+..+|..++..+...|+++.|...|++++. +.|.....++..+....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 77776644555544443
No 234
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=3.6e-06 Score=86.91 Aligned_cols=97 Identities=16% Similarity=0.089 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------H
Q 000176 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-------D 1853 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~-------d 1853 (1924)
....|..+|..++++ ++++|...|++|+...|.. ..+|...|..++..|++++|...|++++...|+.. .
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~--~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN--ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 355788899999999 9999999999999999987 58999999999999999999999999999877542 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1854 LWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1854 lw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+|...+..+...|+++.|...|++++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677788888999999999999999998
No 235
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.34 E-value=7.3e-07 Score=99.59 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=65.2
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCC----------ccCCCCcEEEEEEEEEeCCCC---E
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE----------KEFPIGKLVAGRVLSVEPLSK---R 1431 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~----------~~f~~G~~V~~kVl~vd~e~~---r 1431 (1924)
.++|+++.|.|++++++|+||+|++ .+|+||+++|++.|..++. +.|++||.|+++|+++|.+.+ +
T Consensus 81 p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~~ 159 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 159 (215)
T ss_dssp CCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEE
T ss_pred cCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccEE
Confidence 4689999999999999999999998 9999999999987664443 569999999999999998765 6
Q ss_pred EEEEeecccccc
Q 000176 1432 VEVTLKTSDSRT 1443 (1924)
Q Consensus 1432 i~LSlk~~~~~~ 1443 (1924)
|. |+++.-..+
T Consensus 160 Ig-Smk~~~LG~ 170 (215)
T 2b8k_G 160 IG-SIKEDYLGA 170 (215)
T ss_dssp EE-ECCSTTCEE
T ss_pred EE-EcCCCCCCC
Confidence 66 887755443
No 236
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.33 E-value=8.3e-07 Score=108.40 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
.+|+.++.+|.+.+++++|...|++++...+.+..+|++++..+... ++++|+..|+++++..|.+ ..++..++.+.
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~--~~a~~~L~~l~ 308 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD--KAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999 9999999999999999886 47888888884
Q ss_pred H-HcCCHHHHHHHHHHHHHhCCCCH
Q 000176 1829 F-KNGVADRGRSMFEGILSEYPKRT 1852 (1924)
Q Consensus 1829 ~-~~g~~e~Ar~lfe~aL~~~Pk~~ 1852 (1924)
. ..+..+.++.+|.+++...|.+.
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 4 56788999999999999888754
No 237
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.33 E-value=2.7e-06 Score=89.78 Aligned_cols=131 Identities=9% Similarity=-0.124 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC----hH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HI 1818 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~------~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~----~~ 1818 (1924)
.+|..++.+|...+++++|...|++++..++.. ..+|..++..+... ++++|...|++++...+... ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 456666666666777777777777666554211 13555666666666 66666666666665543321 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEYPK------RTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk------~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
.++..+|.+++..|++++|...|++++...+. ...++..++..+...|++++|...|++++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45666677777777777777777777654321 123455666666666777777777776665
No 238
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.33 E-value=8.4e-07 Score=96.49 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=56.4
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCC----------ccCCCCcEEEEEEEEEeCCCC
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE----------KEFPIGKLVAGRVLSVEPLSK 1430 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~----------~~f~~G~~V~~kVl~vd~e~~ 1430 (1924)
..+|+++.|.|++++++|+||+|++ .+|+||+|+|++.|.-++. +.|++||.|+++|+++|.+.+
T Consensus 81 ~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (171)
T 1y14_B 81 PFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS 155 (171)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETT
T ss_pred CCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCC
Confidence 4589999999999999999999998 9999999999876543332 569999999999999998764
No 239
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=2.1e-06 Score=87.31 Aligned_cols=111 Identities=10% Similarity=0.070 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 000176 1782 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-------TD 1853 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~-------~d 1853 (1924)
....|+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.. ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN--MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 356799999999999 9999999999999999876 5899999999999999999999999999998876 88
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1854 LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1854 lw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
+|..++..+...|+++.|...|++++. ..|. . ..+..+...
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~-~-~~~~~l~~~ 121 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA--EHRT-P-DVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCC-H-HHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC-H-HHHHHHHHH
Confidence 999999999999999999999999999 5553 3 345544444
No 240
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.32 E-value=1.1e-06 Score=99.63 Aligned_cols=76 Identities=29% Similarity=0.421 Sum_probs=68.8
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcc-cccCcccccCCCcEEEEEEEEEecCCCeeEEecccccc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1532 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~-~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lslK~s~~ 1532 (1924)
.++||+|.|+|+++.++|+||.|+. ...|++|+|++++. ...+..+.|++||.|.|+|++++. .+++.||+|...+
T Consensus 55 p~~GDiV~G~V~~v~~~~a~V~I~~-~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r~~~l 131 (229)
T 2ba0_A 55 PSVGDVVIGIIREVAANGWAVDIYS-PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDRIC 131 (229)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCSSSC
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEccccC
Confidence 5899999999999999999999964 69999999999974 667889999999999999999995 5799999988655
No 241
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.31 E-value=7.4e-07 Score=97.30 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=66.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC----------CcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSR----------KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~----------~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
.+ |++|.|+|+++.++|+||+|.. +.+|++|++++++.++.++.+.|++||.|.++|++ +++.|
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~L 129 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLRL 129 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTEE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEEE
Confidence 46 9999999999999999999987 89999999999999999999999999999999998 78999
Q ss_pred Eeecccc
Q 000176 1435 TLKTSDS 1441 (1924)
Q Consensus 1435 Slk~~~~ 1441 (1924)
|+|...-
T Consensus 130 S~k~~~l 136 (179)
T 3m7n_A 130 STKEEEM 136 (179)
T ss_dssp ECCSTTC
T ss_pred EEecCCC
Confidence 9987543
No 242
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.31 E-value=6.5e-07 Score=102.16 Aligned_cols=75 Identities=12% Similarity=0.229 Sum_probs=67.7
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCC----cccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1364 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD----GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1364 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd----~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
..++|++|.|+|+++.++|+||+|+...+|++|++++++ .+..++.+.|++||.|.++|++++. .+++.||+|..
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~LS~k~~ 141 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLLTVQGE 141 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEEECCSS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEEEEEecc
Confidence 368999999999999999999999999999999999987 3567888999999999999999995 56899998753
No 243
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.27 E-value=1.2e-06 Score=88.73 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=50.9
Q ss_pred hCChHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000176 1762 TEQNKLADELLYKMIKK---FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837 (1924)
Q Consensus 1762 ~gk~e~A~~~fe~~lk~---~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~A 1837 (1924)
.|++++|...|++++.. .|....+|+.++..+... ++++|...|+++++..|.+ ..++..+|..++..|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCCHHHH
Confidence 34555555555555554 244455555555555555 6666666666666655554 35555566666666666666
Q ss_pred HHHHHHHHHhCCCCHHHH
Q 000176 1838 RSMFEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw 1855 (1924)
...|++++...|.+.+++
T Consensus 81 ~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHH
Confidence 666666666666555543
No 244
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.23 E-value=6.3e-06 Score=87.67 Aligned_cols=102 Identities=10% Similarity=-0.046 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHhc-CHHHHHHHHHHHHHh-----
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKH-------SCK-----VWLRRVQRLLKQ-QQEGVQAVVQRALLS----- 1811 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-------~~~-----vw~~~a~~l~~~-~~~~A~~l~~ral~~----- 1811 (1924)
..|...++.+...|++++|.+.|++++...|. ... +|.+.+..+... ++++|...|.+||..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34556666666666666666666666666555 222 555555555555 555555555555555
Q ss_pred --CCCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1812 --LPRHKHIKFI----SQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1812 --~p~~~~~~~~----~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
.|.+ ..+| +..|..+...|++++|...|++++...|.+..
T Consensus 92 e~~pd~--~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 92 ELNQDE--GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp CTTSTH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCch--HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 5543 3455 55555555555555555555555555554433
No 245
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.23 E-value=1.7e-06 Score=94.23 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=59.7
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCc------------ccCCCCCCEEEEEEEEeeCCCC---
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL------------SKTYYVGQSVRSNILDVNSETG--- 824 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~------------~~~f~~Gq~V~~~V~~id~~~~--- 824 (1924)
.+|+++.|.|++++++|+||++ +.+.||+|.|++++.+.-++ ...|++||.|+++|+++|.+.+
T Consensus 80 ~~Gev~~G~V~~v~~fG~fV~l-~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~ 158 (172)
T 2c35_B 80 FKGEVVDAVVTQVNKVGLFTEI-GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIF 158 (172)
T ss_dssp CTTCEEEEEEEEEETTEEEEEE-TTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEE
T ss_pred CCCCEEEEEEEEEeCCEEEEEE-CCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCcE
Confidence 4799999999999999999999 57889999999986543222 4469999999999999998866
Q ss_pred eEEEeeccc
Q 000176 825 RITLSLKQS 833 (1924)
Q Consensus 825 r~~lSlk~~ 833 (1924)
++. ||++.
T Consensus 159 ~ig-sm~~~ 166 (172)
T 2c35_B 159 AIG-SLMDD 166 (172)
T ss_dssp EEE-ECCST
T ss_pred EEE-EecCC
Confidence 444 77754
No 246
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.23 E-value=5e-06 Score=102.73 Aligned_cols=139 Identities=11% Similarity=0.036 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1749 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1749 ~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
...|..++..|.+.+++++|.+.|+++++..+..+ .. ..++++....|. ...+|..+|.++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~~------~~~~~~~~~~~~--~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------AA------AEDADGAKLQPV--ALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HH------SCHHHHGGGHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------cc------cChHHHHHHHHH--HHHHHHHHHHHH
Confidence 36789999999999999999999999997542111 01 112222222222 258999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000176 1829 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1908 (1924)
Q Consensus 1829 ~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~ 1908 (1924)
++.|++++|...|+++|...|++..+|..++..+...|++++|...|++|+. +.|... .+|..+.......++.+.+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~-~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDK-AIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 677666 5777777777766666554
Q ss_pred H
Q 000176 1909 E 1909 (1924)
Q Consensus 1909 ~ 1909 (1924)
+
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 247
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.7e-05 Score=99.50 Aligned_cols=165 Identities=8% Similarity=0.012 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhh------------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 000176 1680 KYMAFMLSMADVEKARSIAERALQTINIREENE------------KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1747 (1924)
Q Consensus 1680 ~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~e------------kl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~ 1747 (1924)
.-+.-+.+.|++++|.+.|.++++..+...+.. ....+..+..++...| +.++|.+.|+++++..+
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~--~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG--AKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH
Confidence 344555677899999999999997655432110 0012233334444444 22444444444444322
Q ss_pred C--H-----HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 000176 1748 P--K-----KVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1813 (1924)
Q Consensus 1748 ~--~-----~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~------~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p 1813 (1924)
. . .++..+..++...++++.|.++|+.++...+ ....+|..++..+... ++++|..++++++....
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 1 0 2222333333344444444444444443221 1133444444444444 44444444444443322
Q ss_pred CC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1814 RH----KHIKFISQTAILEFKNGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1814 ~~----~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~ 1846 (1924)
.. ..+.++...++++...|++++|+.+|++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 11 1123444444444444444444444444443
No 248
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.17 E-value=6.9e-05 Score=96.13 Aligned_cols=177 Identities=11% Similarity=0.051 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCC---------hHHHHHHHHHHHHh-cCCCHH
Q 000176 1717 WVAYFNLENEYGNPPEEAVVKVFQRALQY--CDPKKVHLALLGLYERTEQ---------NKLADELLYKMIKK-FKHSCK 1784 (1924)
Q Consensus 1717 Wiayl~le~~~g~~~~e~a~~vferAl~~--~~~~~i~~~l~~i~~~~gk---------~e~A~~~fe~~lk~-~~~~~~ 1784 (1924)
+...++...+.| +.++|.++|+++.+. .|+...|..++..|.+.+. .++|.++|+.|... ...+..
T Consensus 29 l~~~id~c~k~G--~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 29 LKQKLDMCSKKG--DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHTTTSC--CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 444445545555 446666666666543 2344556666665554433 35566666666554 234555
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 000176 1785 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1785 vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~-Pk~~dlw~~y~~le 1862 (1924)
.|..++..+.+. +.++|.++|+++.+.-- ......|..+...+.+.|++++|..+|+.....- .-+...|..++..+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 566666666666 66666666666654321 1123455555555556666666666666655431 22344566666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1863 IRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1863 ~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
.+.|+.++|..+|++.-.....|... .|...+++
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~--T~~~l~~~ 219 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKS--TFDMIEEW 219 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHH--HHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHH--HHHHHHHH
Confidence 66666666666666655544444433 34444433
No 249
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.17 E-value=6.7e-06 Score=87.27 Aligned_cols=94 Identities=16% Similarity=0.028 Sum_probs=70.6
Q ss_pred HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C----------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000176 1761 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q----------QEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1829 (1924)
Q Consensus 1761 ~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~----------~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~ 1829 (1924)
+.+++++|.+.|++++...|.+...|++++..+... + +++|...|++||+..|.. ..+|..+|..+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~--~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK--DEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHH
Confidence 445667788888888888888888888888877766 4 458888888888888776 477888888877
Q ss_pred HcC-----------CHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1830 KNG-----------VADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1830 ~~g-----------~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
..| ++++|...|+++|...|++...|.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 664 788888888888888887654443
No 250
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.15 E-value=1.3e-05 Score=84.51 Aligned_cols=135 Identities=12% Similarity=-0.087 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCC----
Q 000176 1714 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---- 1782 (1924)
Q Consensus 1714 l~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~---- 1782 (1924)
..+|..+.......+ +.++|...|++|++..+.. .+|..++.+|...|++++|.+.|++++..++..
T Consensus 9 ~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 356777777777888 5599999999999876432 589999999999999999999999999876432
Q ss_pred --HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1783 --CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1783 --~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
..+|..++..+... ++++|...|++++...+... ...++..+|.+++..|++++|...|++++....+
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56788999999999 99999999999998754321 2467888999999999999999999999987544
No 251
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.15 E-value=6.6e-05 Score=88.91 Aligned_cols=181 Identities=9% Similarity=0.057 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhCChHHHHH
Q 000176 1694 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD---PKKVHLALLGLYERTEQNKLADE 1770 (1924)
Q Consensus 1694 Ar~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~---~~~i~~~l~~i~~~~gk~e~A~~ 1770 (1924)
|...+++.+..-+. .. ..+......+...| +.++|.+.+.+.+...+ ..+.+..++.+|.+.|+.+.|.+
T Consensus 85 a~~~l~~l~~~~~~-~~----~~~~~la~i~~~~g--~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDKQN-SP----YELYLLATAQAILG--DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTSCC-CH----HHHHHHHHHHHHHT--CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCC-Cc----HHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 77888887754322 11 23445556666778 56999999999998875 34999999999999999999999
Q ss_pred HHHHHHHhcCC----CHHHHHHHHHH----HHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1771 LLYKMIKKFKH----SCKVWLRRVQR----LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1841 (1924)
Q Consensus 1771 ~fe~~lk~~~~----~~~vw~~~a~~----l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lf 1841 (1924)
.++++.+..++ .-.+++.++.. .... ++.+|..+|+++...+|......++.. .++++|++++|..++
T Consensus 158 ~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 158 IFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHH
Confidence 99999887662 23444444433 3333 899999999999998886322233333 788899999999999
Q ss_pred HHHHHhC----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1842 EGILSEY----------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1842 e~aL~~~----------Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
+.+++.+ |++.+.....+.+....|+ .|..+++++.. ..|+.+
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 9888764 8899999888888888887 88999999998 777776
No 252
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.15 E-value=2.6e-06 Score=97.63 Aligned_cols=74 Identities=23% Similarity=0.259 Sum_probs=68.2
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc---CCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV---ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~---~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
.++|++|.|+|+++.++|+||+|+...+|++|++++++.+. .++.+.|++||.|.|+|++++. .+++.||+|..
T Consensus 72 p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~LS~r~~ 148 (251)
T 2je6_I 72 PKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKGK 148 (251)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCST
T ss_pred CCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEEEEccc
Confidence 57999999999999999999999989999999999998877 7888899999999999999995 57999998763
No 253
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.14 E-value=1.1e-05 Score=85.74 Aligned_cols=103 Identities=16% Similarity=0.035 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC------Ch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH------KH----IKFISQTAILEFKNGVADRGRSMFEGILSE---- 1847 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~------~~----~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~---- 1847 (1924)
...|...+..++.. ++++|...|++||...|.+ .+ ..+|...|..+...|++++|...|+++|..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 45688888889989 9999999999999999983 21 239999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000176 1848 ---YPKRTDLW----SIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1848 ---~Pk~~dlw----~~y~~le~k~gd~~~ar~lferal~~~~~pk~ 1887 (1924)
.|++...| +..+..+...|+++.|...|++++. +.|.+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle--l~p~d 135 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE--MIEER 135 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh--cCCCc
Confidence 99999999 9999999999999999999999998 55543
No 254
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=6.1e-05 Score=94.40 Aligned_cols=193 Identities=13% Similarity=0.128 Sum_probs=145.9
Q ss_pred cCCCCchHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhH-HH
Q 000176 1654 EKDAPRTPDEFERLVRSSPNSS-----------------FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-LN 1715 (1924)
Q Consensus 1654 ~~~~p~a~~~ferll~~~P~s~-----------------~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ek-l~ 1715 (1924)
.++..+|.+.|.+++...|+.. .++..++..+...|++++|.+.+.++++..+.-..... ..
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 4557788888888888777643 24678899999999999999999999975543221110 01
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcC------CC
Q 000176 1716 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQNKLADELLYKMIKKFK------HS 1782 (1924)
Q Consensus 1716 lWiayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~------~~ 1782 (1924)
+...+..+....+ +.+.|..++++++..... ..++..++.+|...|++++|..+++.++.... ..
T Consensus 97 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 97 LKTLIEKFEQVPD--SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHCSCCS--CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 2222222223345 468999999999876421 38999999999999999999999999987642 23
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-----HIKFISQTAILEFKNGVADRGRSMFEGILSEY 1848 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~-----~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~ 1848 (1924)
..+|...+..+... ++++|+.+|++++...+... ...++...+.++...++++.|...|..++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 66899999999999 99999999999997643321 13567788888889999999999999998764
No 255
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.09 E-value=6.9e-06 Score=93.04 Aligned_cols=74 Identities=22% Similarity=0.362 Sum_probs=67.9
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc-ccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEeecc
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1439 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~-~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk~~ 1439 (1924)
.++||+|.|+|+++.++|+||+|+...+|++|++++++. +..+..+.|++||.|.|+|++++. ++++.||+|..
T Consensus 55 p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r~~ 129 (229)
T 2ba0_A 55 PSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDR 129 (229)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCSS
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEccc
Confidence 579999999999999999999999889999999999974 678888999999999999999995 57999998763
No 256
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.08 E-value=2.1e-06 Score=101.72 Aligned_cols=105 Identities=16% Similarity=0.222 Sum_probs=80.3
Q ss_pred CCCCCCEEEEEEEEEe-CCeEEEEEccccccchhhH-----hhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeC
Q 000176 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKSKLAI-----LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~v~-~~~l~lT~K~~Lv~~~~~~-----~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~ 615 (1924)
.|.+|+.+.+.|...+ .+....|.|+.+....... +.+|. .+.|+++.|+|.++.++|+||++ |++.|+||.
T Consensus 86 ~~~vGd~ie~~I~~~dfgR~aa~~aKqvi~qkireaere~i~~e~~-~~~GeIV~G~V~ri~~~~v~VDl-Gk~EgiLp~ 163 (344)
T 1hh2_P 86 LAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKEKQFEKYS-ELKGTVTTAEVIRVMGEWADIRI-GKLETRLPK 163 (344)
T ss_dssp TCCTTCEEEEECCCCCSSSCSGGGHHHHHHHHHHHHTTCCSSCCTT-CCTTCEEEEEEEEECSSEEEEEE-TTEEEEEEG
T ss_pred cccCCCEEEEEEccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCEEEEEEEEEecCcEEEEe-CCeEEEEeH
Confidence 5899999999886664 3444445566554432221 33332 23799999999999999999999 589999999
Q ss_pred cccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCC--EEEEEE
Q 000176 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSF 654 (1924)
Q Consensus 616 sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~--ri~lS~ 654 (1924)
+|+. |.+.|++|+.|+|.|++++.+++ ++.||.
T Consensus 164 sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSR 198 (344)
T 1hh2_P 164 KEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSR 198 (344)
T ss_dssp GGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEES
T ss_pred HHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEe
Confidence 9996 55789999999999999998766 556665
No 257
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.07 E-value=0.00022 Score=91.48 Aligned_cols=180 Identities=7% Similarity=0.002 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHhc--CC
Q 000176 1677 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-------PEEAVVKVFQRALQY--CD 1747 (1924)
Q Consensus 1677 ~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~-------~~e~a~~vferAl~~--~~ 1747 (1924)
.+...+..+.+.|++++|.++|+++.+. ....+ ...|-.+++.....+.. ..+.|.++|++.... .|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 4666677778889999999999988864 22222 24566666665443321 147788888887764 36
Q ss_pred CHHHHHHHHHHHHHhCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000176 1748 PKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1825 (1924)
Q Consensus 1748 ~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~-~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A 1825 (1924)
+...|..++..|.+.|+.++|.++|+.|.+. ...+...|..+...+.+. +.++|.++|+++...-- ......|..+.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~-~Pd~~ty~~Li 182 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV-VPEEPELAALL 182 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHH
Confidence 6788999999999999999999999998875 456788888888888888 99999999999887632 22357888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 000176 1826 ILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQE 1862 (1924)
Q Consensus 1826 ~le~~~g~~e~Ar~lfe~aL~~--~Pk~~dlw~~y~~le 1862 (1924)
..+.+.|+.++|..+|++.-.. .|. ...|.......
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 8888999999999999887554 343 34555554443
No 258
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=1.6e-06 Score=110.99 Aligned_cols=125 Identities=15% Similarity=-0.014 Sum_probs=105.9
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHH
Q 000176 1722 NLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQE 1799 (1924)
Q Consensus 1722 ~le~~~g~~~~e~a~~vferAl~~~~~-~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~ 1799 (1924)
+.....+ +.++|.+.|++|++..|. ..+|..++.+|.+.+++++|.+.|+++++..+.+..+|+.++..+... +++
T Consensus 14 ~~~~~~g--~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAK--DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhC--CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3344566 459999999999999987 499999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCC
Q 000176 1800 GVQAVVQRALLSLPRHKHIKFISQTAIL--EFKNGVADRGRSMFE-----------GILSEYPK 1850 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p~~~~~~~~~~~A~l--e~~~g~~e~Ar~lfe-----------~aL~~~Pk 1850 (1924)
+|.+.|++|++..|... .+|..++.. +.+.|++++|..+++ +++...|+
T Consensus 92 eA~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 92 AALRDYETVVKVKPHDK--DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHHHHHHHHHSTTCT--THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999999875 566667666 788899999999999 77766654
No 259
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.04 E-value=2.4e-06 Score=92.83 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=60.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCC----------CccCCCCcEEEEEEEEEeCCCC---E
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP----------EKEFPIGKLVAGRVLSVEPLSK---R 1431 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~----------~~~f~~G~~V~~kVl~vd~e~~---r 1431 (1924)
..+|+++.|.|++++++|+||+|++ ++|+||+++|++.|.-++ ...|++||.|+++|+++|.+.+ +
T Consensus 82 p~~Gev~~G~V~~v~~fG~FV~l~~-~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~~~ 160 (172)
T 3h0g_G 82 PFRGEVVDAIVTTVNKMGFFANIGP-LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIFA 160 (172)
T ss_dssp CCTTCEEECCCCEEETTEEECCBTT-BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEEE
T ss_pred cCCCCEEEEEEEEEEcceEEEEeCC-eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCceE
Confidence 4589999999999999999999985 779999999988765554 4689999999999999998764 4
Q ss_pred EEEEeec
Q 000176 1432 VEVTLKT 1438 (1924)
Q Consensus 1432 i~LSlk~ 1438 (1924)
|. |+|+
T Consensus 161 Ig-tm~~ 166 (172)
T 3h0g_G 161 IA-TMKE 166 (172)
T ss_dssp EE-ECCS
T ss_pred EE-EcCC
Confidence 44 5554
No 260
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.01 E-value=9.8e-06 Score=79.55 Aligned_cols=86 Identities=21% Similarity=0.141 Sum_probs=65.3
Q ss_pred CCCEEEEEEEEEecCcCeEEEEeCC-ceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEEeeeccc
Q 000176 1259 EGDIVGGRISKILSGVGGLVVQIGP-HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1337 (1924)
Q Consensus 1259 ~G~~v~g~V~~v~~~~~g~~V~l~~-~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~LSlr~~~ 1337 (1924)
.++.++|+|...+...+.=|+.... +.++++|++++.+.. | .
T Consensus 13 ~~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~~-------~-----------------------------~- 55 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGA-------A-----------------------------V- 55 (101)
T ss_dssp ---CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSS-------C-----------------------------C-
T ss_pred ccccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecCC-------c-----------------------------c-
Confidence 7888999999986433223776544 589999999985321 0 0
Q ss_pred cCCCCCCCCCCCCCCCCCcchhhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc
Q 000176 1338 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV 1405 (1924)
Q Consensus 1338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~ 1405 (1924)
...+++|+.|++.|..++++|+||+|..+++|+||+|+|+|.++
T Consensus 56 ------------------------~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 56 ------------------------RGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQA 99 (101)
T ss_dssp ------------------------CCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECCC
T ss_pred ------------------------ccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCcC
Confidence 02367999999999999999999999889999999999998754
No 261
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.00 E-value=1.2e-05 Score=95.13 Aligned_cols=120 Identities=19% Similarity=0.209 Sum_probs=87.3
Q ss_pred ccccCCCCeEe-eEEEeecCCCeEEEEecccccchhcc--CCCCcCccC--CCCEEEEEEEEEecCeEEEEECCCeEEEe
Q 000176 715 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH--PNSVVHGYVCNIIETGCFVRFLGRLTGFA 789 (1924)
Q Consensus 715 ~~~~~~G~~i~-~vl~id~~~~~i~ls~K~sl~~~~~~--~~~~~~~~~--~G~~~~G~V~~i~~~G~fV~f~~~l~Glv 789 (1924)
...+.+|+.++ .+...+ -++....+.|+.+...... --.-|++++ .|++++|+|.+++++|+||.+ |++.|++
T Consensus 84 d~~~~vGd~ie~~I~~~d-fgR~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDl-Gk~EgiL 161 (344)
T 1hh2_P 84 DPLAEVGSIVKKELNVKN-FGRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRI-GKLETRL 161 (344)
T ss_dssp CTTCCTTCEEEEECCCCC-SSSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEE-TTEEEEE
T ss_pred CccccCCCEEEEEEcccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEe-CCeEEEE
Confidence 34678999998 332222 2344566667777644321 112234444 799999999999999999999 5999999
Q ss_pred cCCccCcccccCcccCCCCCCEEEEEEEEeeCCCC--eEEEeecccccCCCchhhHHHHHHH
Q 000176 790 PRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFLL 849 (1924)
Q Consensus 790 ~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~--r~~lSlk~~~~~~~d~~~~~~~~~~ 849 (1924)
|+++++ |.+.|++||.|+|.|++++.+++ ++.||.+ .|.++..+|..
T Consensus 162 p~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt-------~p~~lk~Lfel 210 (344)
T 1hh2_P 162 PKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR-------VPEFVIGLMKL 210 (344)
T ss_dssp EGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS-------SHHHHHHHHHH
T ss_pred eHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee-------ccHHHHHHHHh
Confidence 999986 56789999999999999998766 5666654 45667777763
No 262
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.99 E-value=1.8e-05 Score=83.96 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV----------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~----------~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
++++|+..|+++++..|.+ ..+|..+|..+...++ +++|+..|+++|+.+|+..++|+.++..+...|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~--aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLD--ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 6899999999999999988 5999999999988775 569999999999999999999999999999875
Q ss_pred -----------CHHHHHHHHHHHHhcCCCchhH
Q 000176 1867 -----------DVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1867 -----------d~~~ar~lferal~~~~~pk~~ 1888 (1924)
++++|...|++|+. +.|+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--hCCCCH
Confidence 89999999999999 777765
No 263
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=8.5e-06 Score=82.42 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHHhC---CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSL---PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~---p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~ 1873 (1924)
++++|...|+++++.. |. +..+|..+|.+++..|++++|...|++++..+|++..+|..++..+.+.|++++|..
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKD--LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 6788999999999984 43 368999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhH
Q 000176 1874 LFERAISLSLPPKKM 1888 (1924)
Q Consensus 1874 lferal~~~~~pk~~ 1888 (1924)
.|++++. ..|...
T Consensus 83 ~~~~al~--~~p~~~ 95 (117)
T 3k9i_A 83 LLLKIIA--ETSDDE 95 (117)
T ss_dssp HHHHHHH--HHCCCH
T ss_pred HHHHHHH--hCCCcH
Confidence 9999998 444443
No 264
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=3.1e-05 Score=77.72 Aligned_cols=79 Identities=11% Similarity=0.057 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1800 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1879 (1924)
Q Consensus 1800 ~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal 1879 (1924)
.|...|+++++..|.. ..+|..+|.+++..|++++|...|++++...|.....|..++..+...|+++.|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDN--MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666655544 35666666666666666666666666666666666666666666666666666666666666
Q ss_pred h
Q 000176 1880 S 1880 (1924)
Q Consensus 1880 ~ 1880 (1924)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 265
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.92 E-value=5.5e-05 Score=75.89 Aligned_cols=83 Identities=13% Similarity=-0.005 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1766 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1844 (1924)
Q Consensus 1766 e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~a 1844 (1924)
+.|.+.|+++++..|.++.+|+.++..+... ++++|...|++++...|.. ..+|..+|.++...|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY--SVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4688999999999999999999999999999 9999999999999999877 589999999999999999999999999
Q ss_pred HHhCCC
Q 000176 1845 LSEYPK 1850 (1924)
Q Consensus 1845 L~~~Pk 1850 (1924)
+...|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 998874
No 266
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.89 E-value=1.6e-05 Score=104.06 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=64.0
Q ss_pred cccCCCc--EEEEEEEEeecceEEEEEecCceeEEeeccccCc--ccc--c--------CcccccCCCcEEEEEEEEEec
Q 000176 1453 SNLHVGD--IVIGQIKRVESYGLFITIENTNLVGLCHVSELSE--DHV--D--------NIETIYRAGEKVKVKILKVDK 1518 (1924)
Q Consensus 1453 ~~l~~G~--~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~--~~~--~--------~~~~~~~~Gd~Vk~~Vl~id~ 1518 (1924)
-.-++|+ +++|+|++|++||+||+|.+.+++||+|+|+|++ ++. . +....|++||.|+|+|+++|.
T Consensus 554 l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~ 633 (644)
T 2id0_A 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRM 633 (644)
T ss_dssp HGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEET
T ss_pred hhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeC
Confidence 3457899 9999999999999999996558999999999974 221 0 234679999999999999999
Q ss_pred CCCeeEEec
Q 000176 1519 EKRRISLGM 1527 (1924)
Q Consensus 1519 e~~ri~lsl 1527 (1924)
++++|.|++
T Consensus 634 ~~~~I~~~l 642 (644)
T 2id0_A 634 ETRSIIARP 642 (644)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEE
Confidence 999999986
No 267
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.88 E-value=8.1e-05 Score=70.55 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1861 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~l 1861 (1924)
...|+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44566666666665 6666666666666666554 35666666666666666666666666666666666666666655
Q ss_pred HHHc
Q 000176 1862 EIRL 1865 (1924)
Q Consensus 1862 e~k~ 1865 (1924)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 268
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.78 E-value=4.3e-05 Score=85.10 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=55.4
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc-------------------cCcccccCCCcEEEEEEEE
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-------------------DNIETIYRAGEKVKVKILK 1515 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~-------------------~~~~~~~~~Gd~Vk~~Vl~ 1515 (1924)
-.+|+++.|+|+++++||+||+|+ .++|++|++++.+++. ++-...|+.||.|+++|++
T Consensus 79 p~~GEv~~G~Vs~vt~~GifV~lg--~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 156 (203)
T 3ayh_B 79 PFRGEVMLGKIKSCSEEGIRVTIS--FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIES 156 (203)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECS--SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEE
T ss_pred cCCCCEEEEEEEEEeccEEEEEEe--CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEE
Confidence 468999999999999999999994 6899999999987654 3445679999999999999
Q ss_pred EecCC
Q 000176 1516 VDKEK 1520 (1924)
Q Consensus 1516 id~e~ 1520 (1924)
++...
T Consensus 157 v~~~~ 161 (203)
T 3ayh_B 157 EDFVD 161 (203)
T ss_dssp EEECC
T ss_pred EEccc
Confidence 98644
No 269
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=2e-05 Score=77.87 Aligned_cols=89 Identities=15% Similarity=0.014 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------TDLW 1855 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~------~dlw 1855 (1924)
...|..++..++.. ++++|...|++++...|.+ ..+|..+|..++..|++++|...|++++...|++ ..+|
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34555556555555 6666666666666665554 3556666666666666666666666666666655 4455
Q ss_pred HHHHHHHHHcCCHHHHHH
Q 000176 1856 SIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1856 ~~y~~le~k~gd~~~ar~ 1873 (1924)
..++..+...|+++.|..
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 555555555544444433
No 270
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=1.4e-05 Score=79.07 Aligned_cols=95 Identities=9% Similarity=-0.004 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQT 1824 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~----~~~~~~~ 1824 (1924)
..|..++..+...|++++|.+.|++++...|.++.+|..++..+... ++++|...|++++...|.+.. ..++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999 999999999999999987621 4677888
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 000176 1825 AILEFKNGVADRGRSMFEGI 1844 (1924)
Q Consensus 1825 A~le~~~g~~e~Ar~lfe~a 1844 (1924)
+..+...|+++.|...|+++
T Consensus 85 ~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHhHhhhHhHHHHh
Confidence 88888888777766665543
No 271
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.70 E-value=0.00027 Score=66.80 Aligned_cols=81 Identities=17% Similarity=0.135 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
..|..++.+|...+++++|...|++++...+.+..+|+.++..+... ++++|...|++++...|.+ ..++..+|.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Confidence 67888899999999999999999999999888999999999999988 9999999999999998876 57888888887
Q ss_pred HHcC
Q 000176 1829 FKNG 1832 (1924)
Q Consensus 1829 ~~~g 1832 (1924)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6654
No 272
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.63 E-value=5.9e-05 Score=84.50 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=56.0
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccc--------------cCcccccCCCcEEEEEEEEEecC
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--------------DNIETIYRAGEKVKVKILKVDKE 1519 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~--------------~~~~~~~~~Gd~Vk~~Vl~id~e 1519 (1924)
.-.+|+++.|+|++|++||+||+|.+ .++|++|++++.+++. ++-...|+.||.|+++|.++|..
T Consensus 78 ~p~vGEv~~G~Is~Vt~fGifVeL~g-~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~ 156 (218)
T 2ckz_B 78 KPFLGEIVTGWISKCTAEGIKVSLLG-IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFV 156 (218)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECTT-SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEEC
T ss_pred cCCCCCEEEEEEEEEccCcEEEEccC-ccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcc
Confidence 45689999999999999999999964 6899999999977653 22356799999999999999975
Q ss_pred CC
Q 000176 1520 KR 1521 (1924)
Q Consensus 1520 ~~ 1521 (1924)
.+
T Consensus 157 ~~ 158 (218)
T 2ckz_B 157 DV 158 (218)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 273
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.49 E-value=0.0016 Score=75.28 Aligned_cols=111 Identities=11% Similarity=0.107 Sum_probs=86.3
Q ss_pred HHHHHHHhCCC-CChHHHHHHHHHHHH-H--cCC------HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHc-----C
Q 000176 1804 VVQRALLSLPR-HKHIKFISQTAILEF-K--NGV------ADRGRSMFEGILSEYPKRTD--LWSIYLDQEIRL-----G 1866 (1924)
Q Consensus 1804 l~~ral~~~p~-~~~~~~~~~~A~le~-~--~g~------~e~Ar~lfe~aL~~~Pk~~d--lw~~y~~le~k~-----g 1866 (1924)
-+..++..+.. +...-+|...+..-+ . .|+ ...|+.++++++..+|+..+ +|..++.+|.+. |
T Consensus 139 ~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG 218 (301)
T 3u64_A 139 RLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG 218 (301)
T ss_dssp HHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred hHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC
Confidence 34555655532 222346666666543 1 233 78999999999999999544 999999999995 9
Q ss_pred CHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 000176 1867 DVDLIRGLFERAISLSLPPKK-MKFLFKKYLEYEKS-VGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1867 d~~~ar~lferal~~~~~pk~-~k~lw~~yl~~E~~-~G~~~~~~~v~~rAle 1917 (1924)
+.++|+.+|+||+. +.|.. + ..+..|.+|... .|+.+.+..++++|+.
T Consensus 219 d~ekA~~~ferAL~--LnP~~~i-d~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 219 GMEKAHTAFEHLTR--YCSAHDP-DHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp CHHHHHHHHHHHHH--HCCTTCS-HHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 99999999999999 78765 6 689999999877 4999999999999976
No 274
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.49 E-value=8.8e-05 Score=98.77 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=53.6
Q ss_pred cEEEEEEEEeecceEEEEEecCceeEEeeccccC--cccc-----------cC----cccccCCCcEEEEEEEEEecC--
Q 000176 1459 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--EDHV-----------DN----IETIYRAGEKVKVKILKVDKE-- 1519 (1924)
Q Consensus 1459 ~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels--~~~~-----------~~----~~~~~~~Gd~Vk~~Vl~id~e-- 1519 (1924)
+++.|+|.+|.+||+||.|.+.+++||||+|+++ +++. .+ ....|++||.|+|+|+.+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 7999999999999999999766899999999996 4331 12 257899999999999999988
Q ss_pred -CCeeEEecc
Q 000176 1520 -KRRISLGMK 1528 (1924)
Q Consensus 1520 -~~ri~lslK 1528 (1924)
++||.||||
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 799999987
No 275
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.47 E-value=0.00024 Score=69.52 Aligned_cols=68 Identities=10% Similarity=-0.043 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1849 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~P 1849 (1924)
|.++.+|+.++..++.. ++++|...|+++++..|... .+|..+|.+++..|++++|+..|++++...|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV--GTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 45555666666666655 66666666666666665542 5566666666666666666666666665544
No 276
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.47 E-value=0.0002 Score=69.37 Aligned_cols=61 Identities=10% Similarity=-0.069 Sum_probs=33.4
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC
Q 000176 1755 LLGLYERTEQNKLADELLYKMIKKFKHSCK-VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1815 (1924)
Q Consensus 1755 l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~-vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~ 1815 (1924)
.+..+...|++++|.+.|+++++..+.+.. +|+.++..+... ++++|...|+++++..|.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 444455555555555555555555555555 555555555555 5555555555555555544
No 277
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.46 E-value=0.00039 Score=68.05 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..+|..+|..++..|++++|...|++++...|+...+|..++..+...|+++.|...|++++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999999999999998
No 278
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.45 E-value=0.0001 Score=86.37 Aligned_cols=73 Identities=21% Similarity=0.174 Sum_probs=60.9
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc-ccC---------CCCccCCCCcEEEEEEEEEeCCCCEEEE
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVE---------SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1434 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~-~~~---------~~~~~f~~G~~V~~kVl~vd~e~~ri~L 1434 (1924)
.++|++|.|+|+++..+|+||+|+...+|++|++++++. .+. +..+.|++||.|.|+|++++ +++.+.|
T Consensus 93 P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~-~~~~i~L 171 (308)
T 2nn6_H 93 GEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVF-SDGAVSL 171 (308)
T ss_dssp CCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEE-TTTEEEE
T ss_pred CCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcC-CCCCEEE
Confidence 579999999999999999999999778999999999752 221 23368999999999999999 4778999
Q ss_pred Eeec
Q 000176 1435 TLKT 1438 (1924)
Q Consensus 1435 Slk~ 1438 (1924)
|.|.
T Consensus 172 Str~ 175 (308)
T 2nn6_H 172 HTRS 175 (308)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9885
No 279
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0001 Score=99.86 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=61.1
Q ss_pred CcEEEEEEEEeecceEEEEEecCceeEEeeccccC--cccc-----------cC----cccccCCCcEEEEEEEEEecC-
Q 000176 1458 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--EDHV-----------DN----IETIYRAGEKVKVKILKVDKE- 1519 (1924)
Q Consensus 1458 G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels--~~~~-----------~~----~~~~~~~Gd~Vk~~Vl~id~e- 1519 (1924)
|+++.|.|.+|.+||+||.|.+.+++||+|+|+|+ +++. ++ ....|++||.|+|+|+.+|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 99999999999999999999766899999999997 4431 11 347899999999999999874
Q ss_pred --CCeeEEecc
Q 000176 1520 --KRRISLGMK 1528 (1924)
Q Consensus 1520 --~~ri~lslK 1528 (1924)
++||.||||
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 489999997
No 280
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.44 E-value=0.00023 Score=88.94 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=64.1
Q ss_pred cccCCCcEEEEEEEEeecc--eEEEEEecCceeEEeeccccCcccc---------cCcccccCCCcEEEEEEEEEecCCC
Q 000176 1453 SNLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSEDHV---------DNIETIYRAGEKVKVKILKVDKEKR 1521 (1924)
Q Consensus 1453 ~~l~~G~~v~G~V~~v~~~--GvFV~l~~~~v~gl~h~sels~~~~---------~~~~~~~~~Gd~Vk~~Vl~id~e~~ 1521 (1924)
....+|+++.|+|++|.++ |+||+|++ +..||+|+|++++.+. .++.+.+++||.|.|.|++.....+
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG~-gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~K 119 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNK 119 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESSS-SSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTC
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeCC-CcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccC
Confidence 3567999999999999999 99999976 8999999999988763 3466789999999999999987777
Q ss_pred eeEEecc
Q 000176 1522 RISLGMK 1528 (1924)
Q Consensus 1522 ri~lslK 1528 (1924)
...|+..
T Consensus 120 Ga~lTt~ 126 (517)
T 2bx2_L 120 GAALTTF 126 (517)
T ss_dssp CCEEESS
T ss_pred CceEEee
Confidence 7666544
No 281
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.38 E-value=0.00019 Score=69.56 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=47.8
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1788 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK-FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1788 ~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~-~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
..+..++.. ++++|...|+++++..|.+ .. +|..+|.+++..|++++|...|++++...|++..+|.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVG--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 445555666 7777777777777777665 35 7777777777777777777777777777777766663
No 282
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.35 E-value=0.00016 Score=84.79 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=63.2
Q ss_pred ccCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcc----ccc------CcccccCCCcEEEEEEEEEecCCCee
Q 000176 1454 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED----HVD------NIETIYRAGEKVKVKILKVDKEKRRI 1523 (1924)
Q Consensus 1454 ~l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~----~~~------~~~~~~~~Gd~Vk~~Vl~id~e~~ri 1523 (1924)
-.++||+|.|+|+++.++|+||+|.. ...|++|+|+++.. +.. +..+.|++||.|.|+|++++ +.+.+
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s-~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~-~~~~i 169 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNS-RLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVF-SDGAV 169 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSS-SSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEE-TTTEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECC-CcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcC-CCCCE
Confidence 45899999999999999999999963 57899999999753 221 34578999999999999999 56789
Q ss_pred EEecccccc
Q 000176 1524 SLGMKSSYF 1532 (1924)
Q Consensus 1524 ~lslK~s~~ 1532 (1924)
.||+|...+
T Consensus 170 ~LStr~~~L 178 (308)
T 2nn6_H 170 SLHTRSLKY 178 (308)
T ss_dssp EEECCSSTT
T ss_pred EEEecCcCC
Confidence 999987655
No 283
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.34 E-value=0.0006 Score=86.82 Aligned_cols=121 Identities=10% Similarity=0.070 Sum_probs=77.4
Q ss_pred HHhCChHHHHHHHHHHHHhcC-----C---CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC----C-CCCh-HHHHHHH
Q 000176 1760 ERTEQNKLADELLYKMIKKFK-----H---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL----P-RHKH-IKFISQT 1824 (1924)
Q Consensus 1760 ~~~gk~e~A~~~fe~~lk~~~-----~---~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~----p-~~~~-~~~~~~~ 1824 (1924)
...|+|++|..+|++++.... . ....+.+++..|..+ ++++|..+|+++|... + .+.+ ...+.++
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345666666666666665431 2 233455666666666 6666666666666532 2 2211 2467788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1825 AILEFKNGVADRGRSMFEGILSEY-----PKRTD---LWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1825 A~le~~~g~~e~Ar~lfe~aL~~~-----Pk~~d---lw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
|.+|..+|++++|..+|+++|... |+..+ +...+.+.+..++.+++|..+|.++..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888642 44443 455666666677788888888887765
No 284
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.33 E-value=0.0021 Score=66.99 Aligned_cols=105 Identities=8% Similarity=-0.081 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c-CHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQEGVQAVVQR 1807 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~----~-~~~~A~~l~~r 1807 (1924)
++|...|++|++..+..-. ++.+|......++|.+.|+++... .++..++.++.++.. . ++++|...|++
T Consensus 12 ~~A~~~~~~aa~~g~~~a~---lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 86 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC---LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSK 86 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH---HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHhhh---HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 4555555555555433322 555555445555555555555543 344555555555554 3 55555555555
Q ss_pred HHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 000176 1808 ALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILS 1846 (1924)
Q Consensus 1808 al~~~p~~~~~~~~~~~A~le~~----~g~~e~Ar~lfe~aL~ 1846 (1924)
|.+. .+...+..+|.++.. .+++++|..+|+++..
T Consensus 87 Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 87 ACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 5443 123445555555544 4455555555555443
No 285
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.32 E-value=0.0003 Score=92.07 Aligned_cols=72 Identities=10% Similarity=0.046 Sum_probs=62.2
Q ss_pred CCCCC--EEEEEEEEEeeceEEEEe-CCCcEEEEECccCCC--cc-cC---------CCCccCCCCcEEEEEEEEEeCCC
Q 000176 1365 LSPNM--IVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSD--GY-VE---------SPEKEFPIGKLVAGRVLSVEPLS 1429 (1924)
Q Consensus 1365 lk~G~--~v~G~V~~v~~~G~fV~l-~~~v~g~v~~selsd--~~-~~---------~~~~~f~~G~~V~~kVl~vd~e~ 1429 (1924)
-++|+ ++.|+|++++++|+||.| ..+++|+||+++|++ +| .- +....|++||.|+++|+++|.+.
T Consensus 556 ~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~ 635 (644)
T 2id0_A 556 DKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMET 635 (644)
T ss_dssp GGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTT
T ss_pred hccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCC
Confidence 46899 999999999999999999 468999999999984 22 11 33457999999999999999999
Q ss_pred CEEEEEe
Q 000176 1430 KRVEVTL 1436 (1924)
Q Consensus 1430 ~ri~LSl 1436 (1924)
++|.+++
T Consensus 636 ~~I~~~l 642 (644)
T 2id0_A 636 RSIIARP 642 (644)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 9999987
No 286
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.32 E-value=0.00035 Score=77.78 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=53.5
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccc-------------------cCcccCCCCCCEEEEEEEEee
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-------------------ADLSKTYYVGQSVRSNILDVN 820 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~-------------------~~~~~~f~~Gq~V~~~V~~id 820 (1924)
..|+++.|.|++++++|+||++ +.+.|++|.+++.+++. .+....|++||.|+++|.+++
T Consensus 80 ~~GEv~~G~Vs~vt~~GifV~l-g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 158 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSEEGIRVTI-SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESED 158 (203)
T ss_dssp CTTCEEEEEEEEEETTEEEEEC-SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEE-eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEEE
Confidence 4699999999999999999999 78999999999976542 334456999999999999998
Q ss_pred CCC
Q 000176 821 SET 823 (1924)
Q Consensus 821 ~~~ 823 (1924)
...
T Consensus 159 ~~~ 161 (203)
T 3ayh_B 159 FVD 161 (203)
T ss_dssp ECC
T ss_pred ccc
Confidence 743
No 287
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.29 E-value=0.00051 Score=81.48 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=65.5
Q ss_pred CCCCEEEEEEEE----EecCeEEEEECC---CeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEeecc
Q 000176 760 HPNSVVHGYVCN----IIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1924)
Q Consensus 760 ~~G~~~~G~V~~----i~~~G~fV~f~~---~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~~r~~lSlk~ 832 (1924)
++|++++|.|.+ +.+.++||.+.+ ++.|++|++++. |.+.|++||.|+|.|++|+.+.+...+.+..
T Consensus 129 r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~kgpqI~LSR 202 (366)
T 1k0r_A 129 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLSR 202 (366)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCCCccEEEEEe
Confidence 489999999999 999999999976 599999999986 4579999999999999999886654444322
Q ss_pred cccCCCchhhHHHHHHHH
Q 000176 833 SCCSSTDASFMQEHFLLE 850 (1924)
Q Consensus 833 ~~~~~~d~~~~~~~~~~~ 850 (1924)
+.|.|+..+|..+
T Consensus 203 -----T~p~lv~~Lfe~E 215 (366)
T 1k0r_A 203 -----THPNLVRKLFSLE 215 (366)
T ss_dssp -----SCHHHHHHHHHHH
T ss_pred -----CChHHHHHHHHhc
Confidence 3567788877743
No 288
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.28 E-value=0.00059 Score=86.86 Aligned_cols=129 Identities=12% Similarity=0.107 Sum_probs=99.2
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhc-----CCC---HHHHHH
Q 000176 1726 EYGNPPEEAVVKVFQRALQYCDP---------KKVHLALLGLYERTEQNKLADELLYKMIKKF-----KHS---CKVWLR 1788 (1924)
Q Consensus 1726 ~~g~~~~e~a~~vferAl~~~~~---------~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~-----~~~---~~vw~~ 1788 (1924)
..|. .++|...|++|++.... ...+..++.+|...|++++|..+|++++..+ ++. ...+.+
T Consensus 321 ~qg~--~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 321 SEGL--YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp TTTC--HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred hCCC--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4574 49999999999976421 2889999999999999999999999999765 334 445789
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHhC-----CCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1789 RVQRLLKQ-QQEGVQAVVQRALLSL-----PRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1789 ~a~~l~~~-~~~~A~~l~~ral~~~-----p~~~~-~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
+|..+..+ ++++|..+|++|+... |+|.. .++...+++.+..++.+++|..+|.++....-++..+|.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~~ 473 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQV 473 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999 9999999999999754 33321 245677788888899999999999998766555556663
No 289
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.28 E-value=0.00084 Score=64.97 Aligned_cols=69 Identities=13% Similarity=0.035 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1780 KHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
|+++.+|..|++.++.. ..++|+.+|++||+..|.+ +..+..+|..+++.|++++|...|++++...|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~--~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN--EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45566666666666544 2566666666666666655 466666666666666666666666666666665
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0066 Score=66.15 Aligned_cols=133 Identities=10% Similarity=0.057 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHh--c--CCCHHHHHHHHHHHHhc----CH---HHHH-HHHHHHHHhCCCCC-------hHHHHHHHHH
Q 000176 1766 KLADELLYKMIKK--F--KHSCKVWLRRVQRLLKQ----QQ---EGVQ-AVVQRALLSLPRHK-------HIKFISQTAI 1826 (1924)
Q Consensus 1766 e~A~~~fe~~lk~--~--~~~~~vw~~~a~~l~~~----~~---~~A~-~l~~ral~~~p~~~-------~~~~~~~~A~ 1826 (1924)
+..+..|+..+.. + .+...+|..|..+..+. .. ..-. .+++||+..+.... .+++|..||.
T Consensus 9 ~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~ 88 (202)
T 3esl_A 9 NQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYIN 88 (202)
T ss_dssp HHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 3455556555544 3 34456677777776655 11 1123 56777777554321 2567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1827 LEFKNGVADRGRSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1827 le~~~g~~e~Ar~lfe~aL~~~--Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
+. ..++...++.+|..+...- -+...+|..|+.++...|++.+|..+|+.++... ......+-.+|-.|+.+
T Consensus 89 ~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~--A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 89 LF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN--CRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBSHHHHHHHHHHHHHH
T ss_pred hh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CccHHHHHHHHHHHHHH
Confidence 65 2334567777777776543 3456677777777777788888888888888733 33344567777777655
No 291
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.22 E-value=0.0033 Score=65.49 Aligned_cols=109 Identities=10% Similarity=-0.095 Sum_probs=92.4
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHH
Q 000176 1763 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRG 1837 (1924)
Q Consensus 1763 gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~----~g~~e~A 1837 (1924)
.++++|...|+++..... +... ++.++... ..++|...|++|.+. .+...+..+|.+++. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 357889999999998753 3333 77777777 888899999999986 246899999999998 7899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 000176 1838 RSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGLFERAISL 1881 (1924)
Q Consensus 1838 r~lfe~aL~~~Pk~~dlw~~y~~le~k----~gd~~~ar~lferal~~ 1881 (1924)
..+|+++... .+.+.+..++.++.. .+++++|..+|+++...
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999999876 678899999999998 89999999999999984
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.18 E-value=0.0025 Score=66.62 Aligned_cols=128 Identities=13% Similarity=0.231 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHcCC
Q 000176 1766 KLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLSLPRHK-------HIKFISQTAILEFKNGV 1833 (1924)
Q Consensus 1766 e~A~~~fe~~lk~~--~~~~~vw~~~a~~l~~~---~~~~A~~l~~ral~~~p~~~-------~~~~~~~~A~le~~~g~ 1833 (1924)
..+++.|+..+..+ .+...+|..|+.+..+. ....-..+++|+++.+.... .+++|+.||.+.
T Consensus 7 ~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~----- 81 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN----- 81 (152)
T ss_dssp HHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB-----
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc-----
Confidence 34555666666555 24466788887777776 33335677888887764422 267888888753
Q ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1834 ADRGRSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~--Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
+.++.+|.-+...- -+...+|..|+.++...|++.+|..+|+.++.. .......+-.+|-.|+.+
T Consensus 82 -~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~--~A~P~~rL~~~~~~F~~R 148 (152)
T 4a1g_A 82 -SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN--QAEPREFLQQQYRLFQTR 148 (152)
T ss_dssp -SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBSHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCccHHHHHHHHHHHHHH
Confidence 33778888876543 345678888888888889999999999999983 444455678888877754
No 293
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.17 E-value=0.00058 Score=85.28 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=66.0
Q ss_pred CCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEECccCCCcccC---------CCCccCCCCcEEEEEEEEEeCCCCEEE
Q 000176 1365 LSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSDGYVE---------SPEKEFPIGKLVAGRVLSVEPLSKRVE 1433 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~--G~fV~l~~~v~g~v~~selsd~~~~---------~~~~~f~~G~~V~~kVl~vd~e~~ri~ 1433 (1924)
..+|+++.|+|+++.++ |+||+++.+.+||+|++++++.+.. +..+.+++||.|.|.|+.....++...
T Consensus 43 ~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~ 122 (517)
T 2bx2_L 43 QKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAA 122 (517)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCCE
T ss_pred CCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCce
Confidence 46899999999999999 9999999999999999999987742 345679999999999999887777777
Q ss_pred EEeecccc
Q 000176 1434 VTLKTSDS 1441 (1924)
Q Consensus 1434 LSlk~~~~ 1441 (1924)
||..-+..
T Consensus 123 lTt~isl~ 130 (517)
T 2bx2_L 123 LTTFISLA 130 (517)
T ss_dssp EESSCCEE
T ss_pred EEeeEEec
Confidence 77765543
No 294
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00046 Score=77.33 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=54.1
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccc--------------cCcccCCCCCCEEEEEEEEeeCCCC
Q 000176 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR--------------ADLSKTYYVGQSVRSNILDVNSETG 824 (1924)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~--------------~~~~~~f~~Gq~V~~~V~~id~~~~ 824 (1924)
..|+++.|.|++++++|+||++.|.+.|++|.+.+.+++. ++....|++||.|+++|.++|..++
T Consensus 80 ~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~ 158 (218)
T 2ckz_B 80 FLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDV 158 (218)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccC
Confidence 3599999999999999999999888999999999975442 2224459999999999999997653
No 295
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.16 E-value=0.0059 Score=73.53 Aligned_cols=129 Identities=11% Similarity=0.009 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---------CHHHHHHHHHHH--HHhCCCCChHHHHHHHHHHHHHcCC
Q 000176 1765 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---------QQEGVQAVVQRA--LLSLPRHKHIKFISQTAILEFKNGV 1833 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~---------~~~~A~~l~~ra--l~~~p~~~~~~~~~~~A~le~~~g~ 1833 (1924)
+.+|.++|+++++..|....+|-.++..+... .....+..++++ +...|.. ..++..+|..++..|+
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~--a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL--SIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC--HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC--HHHHHHHHHHHHhCCC
Confidence 35566666666666665555544322222111 111222233322 1222333 5677777777777799
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000176 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1898 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~ 1898 (1924)
++.|+..+++++..+|. ...|..++.++.-.|++++|.+.|++|+. +.|...-.+|..-+-|
T Consensus 293 ~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~~~l~F 354 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWIENGIF 354 (372)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHHhCcee
Confidence 99999999999998874 56677778888888999999999999998 5554443555554444
No 296
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.14 E-value=0.00061 Score=80.81 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=56.2
Q ss_pred ccccC--CCcEEEEEEEE----eecceEEEEEec--CceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCe-
Q 000176 1452 LSNLH--VGDIVIGQIKR----VESYGLFITIEN--TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR- 1522 (1924)
Q Consensus 1452 ~~~l~--~G~~v~G~V~~----v~~~GvFV~l~~--~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~r- 1522 (1924)
+..|+ +|++|+|+|.+ +.++++||.|+. .+++|++|.+|+.. .+.|++||+|+|.|++|+.+.+.
T Consensus 123 ~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP------~E~~~~GDrVkvyV~~V~~~~kgp 196 (366)
T 1k0r_A 123 YGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVP------GESYEHGNRLRCYVVGVTRGAREP 196 (366)
T ss_dssp ----CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCT------TCCCCTTCEEEEEEEEEECCSSSC
T ss_pred HHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCC------CccCCCCCEEEEEEEEEecCCCcc
Confidence 55665 99999999999 999999999963 14999999999874 46899999999999999987654
Q ss_pred -eEEec
Q 000176 1523 -ISLGM 1527 (1924)
Q Consensus 1523 -i~lsl 1527 (1924)
|.||.
T Consensus 197 qI~LSR 202 (366)
T 1k0r_A 197 LITLSR 202 (366)
T ss_dssp EEEEES
T ss_pred EEEEEe
Confidence 55554
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.014 Score=63.58 Aligned_cols=132 Identities=11% Similarity=0.057 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHh---CCh---HHHH-HHHHHHHHhcCCC---------HHHHHHHHH
Q 000176 1733 EAVVKVFQRALQY-----CDPKKVHLALLGLYERT---EQN---KLAD-ELLYKMIKKFKHS---------CKVWLRRVQ 1791 (1924)
Q Consensus 1733 e~a~~vferAl~~-----~~~~~i~~~l~~i~~~~---gk~---e~A~-~~fe~~lk~~~~~---------~~vw~~~a~ 1791 (1924)
+..+..|++.++. .++..+|..|+....++ |.. ..-. .+++++++.|.+. .++|+.|+.
T Consensus 9 ~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~ 88 (202)
T 3esl_A 9 NQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYIN 88 (202)
T ss_dssp HHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 5567778888876 24469999999866543 222 2344 7899999877432 678999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 000176 1792 RLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-DLWSIYLDQEIR 1864 (1924)
Q Consensus 1792 ~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~-dlw~~y~~le~k 1864 (1924)
++.......++++|.-+...-=...+..+|..||.++...|++.+|..+|+.+++....-. .+...|-.+..+
T Consensus 89 ~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 89 LFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred hhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 7621147789999999988776777789999999999999999999999999999875433 367777777765
No 298
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.08 E-value=0.0044 Score=65.02 Aligned_cols=89 Identities=8% Similarity=0.023 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1766 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSL-PRHKHIKFISQTAILEFKNGVADRGRSM 1840 (1924)
Q Consensus 1766 e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~-p~~~~~~~~~~~A~le~~~g~~e~Ar~l 1840 (1924)
..+++.|++.+...+.+..+.++|+-.+.+. +++++..+|+..++.. |. .+.+.++.+|..+++.|++++|+..
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~-~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHHccCHHHHHHH
Confidence 3455556555555555666666666666665 4456666676666665 31 1246666677777777777777777
Q ss_pred HHHHHHhCCCCHHHH
Q 000176 1841 FEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1841 fe~aL~~~Pk~~dlw 1855 (1924)
|+++|+..|++....
T Consensus 94 ~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHCTTCHHHH
T ss_pred HHHHHhcCCCCHHHH
Confidence 777777777665543
No 299
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.07 E-value=0.0011 Score=74.44 Aligned_cols=70 Identities=31% Similarity=0.472 Sum_probs=61.3
Q ss_pred CCCEEEEEEEE----EecCcCeEEEEeCC---ceEEEEecccccccccCCCCCCCCCCCEEEEEEEEEecccCCceEEEE
Q 000176 1259 EGDIVGGRISK----ILSGVGGLVVQIGP---HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEISRTVRGTFHVEL 1331 (1924)
Q Consensus 1259 ~G~~v~g~V~~----v~~~~~g~~V~l~~---~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~vd~~~~~~~~i~L 1331 (1924)
+|++|+|+|.+ +.+. .++|+||. +.+|+||..|+. |.+.|++|+.|+|+|++++.+.+ ..++.|
T Consensus 7 ~GeIVtG~V~r~~~~v~~~--~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~-gpqIiL 77 (251)
T 2asb_A 7 EGEIVAGVIQRDSRANARG--LVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAR-EPLITL 77 (251)
T ss_dssp TTCEEEEEEECCHHHHHTT--CEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSS-SCEEEE
T ss_pred CCCEEEEEEEEccccccCC--eEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCC-CCEEEE
Confidence 89999999999 7877 99999997 699999999984 67899999999999999997644 368999
Q ss_pred eeeccc
Q 000176 1332 SLRSSL 1337 (1924)
Q Consensus 1332 Slr~~~ 1337 (1924)
|...+.
T Consensus 78 SRt~p~ 83 (251)
T 2asb_A 78 SRTHPN 83 (251)
T ss_dssp ESSCHH
T ss_pred EeccHH
Confidence 986654
No 300
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.06 E-value=0.026 Score=68.00 Aligned_cols=173 Identities=7% Similarity=0.027 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCCHHHHHHHHHHH--HHc---CCHHHHHHHHHHHHHhcCCcchhhHHHHHH
Q 000176 1644 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM--LSM---ADVEKARSIAERALQTINIREENEKLNIWV 1718 (1924)
Q Consensus 1644 ~~~~~e~~~~~~~~p~a~~~ferll~~~P~s~~~W~~y~~~~--~~~---~e~dkAr~v~eraL~~i~~~ee~ekl~lWi 1718 (1924)
++...-...+....+ ....+++...-|.+..+|-.|+... +.. ..+.+|+.+|++|++..|.....- ..+++
T Consensus 165 ei~~~I~~aL~~~l~--~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~-A~la~ 241 (372)
T 3ly7_A 165 DLLESLSKALNQPWP--QRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYAR-AEKAL 241 (372)
T ss_dssp HHHHHHHHHTTCCCC--HHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHH
T ss_pred HHHHHHHHHhCchhh--HHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHH-HHHHH
Confidence 444444444454443 4456677777888888887777654 322 356899999999999888432111 12233
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-C
Q 000176 1719 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1797 (1924)
Q Consensus 1719 ayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~ 1797 (1924)
+|+.+...... . ........++ .+.. .++...+..+.+|..++..++.. +
T Consensus 242 a~~~~~~~~~~-~-~~~~~~l~~a--------------------------~~a~-~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 242 VDIVRHSQHPL-D-EKQLAALNTE--------------------------IDNI-VTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHSCC-C-HHHHHHHHHH--------------------------HHHH-HTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccCCC-c-hhhHHHHHHH--------------------------HHHH-HhcccCCcCHHHHHHHHHHHHhCCC
Confidence 44422222111 1 1111111111 1100 11123356777777777766666 8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
+++|...++||+...|. ...|..+|.++.-.|++++|.+.|++|+..+|..
T Consensus 293 ~d~A~~~l~rAl~Ln~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 88888888888888753 3567777888888888888888888888888864
No 301
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.01 E-value=0.0019 Score=72.53 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=66.3
Q ss_pred CCCCEEEEEEEE----EecCeEEEEECC---CeEEEecCCccCcccccCcccCCCCCCEEEEEEEEeeCCC--CeEEEee
Q 000176 760 HPNSVVHGYVCN----IIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSL 830 (1924)
Q Consensus 760 ~~G~~~~G~V~~----i~~~G~fV~f~~---~l~Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~V~~id~~~--~r~~lSl 830 (1924)
++|++++|.|.+ +.+..+||.+.. +..|++|++++. |.+.|++||.|+|.|++++.+. .++.||.
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLSR 79 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLSR 79 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEEe
Confidence 469999999999 888999999965 599999999985 5688999999999999999875 6788886
Q ss_pred cccccCCCchhhHHHHHHHH
Q 000176 831 KQSCCSSTDASFMQEHFLLE 850 (1924)
Q Consensus 831 k~~~~~~~d~~~~~~~~~~~ 850 (1924)
. .+.|+..+|..+
T Consensus 80 t-------~p~lvk~Lfe~E 92 (251)
T 2asb_A 80 T-------HPNLVRKLFSLE 92 (251)
T ss_dssp S-------CHHHHHHHHHHH
T ss_pred c-------cHHHHHHHHHhc
Confidence 4 567788888743
No 302
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=96.96 E-value=0.0016 Score=70.06 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=63.4
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEe------cc
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG------MK 1528 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~ls------lK 1528 (1924)
.++||+|-|.|+.+..++.+|+|.+....|++|++++.. ..++....|++||.|.|+|.+++. ...+.|+ +|
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g-~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Ltc~~~~~~r 82 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPN-ASKKNRPTLQVGDLVYARVCTAEK-ELEAEIECFDSTTGR 82 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTT-CCSSSCCCCCTTCEEEEEEEECCT-TSCCEEESSCTTTCS
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCc-hhhhhhccCCCCCEEEEEEEEecC-CCceEEEeccccccc
Confidence 368999999999999999999996315899999998863 345677889999999999999984 4688998 66
Q ss_pred cccc
Q 000176 1529 SSYF 1532 (1924)
Q Consensus 1529 ~s~~ 1532 (1924)
+..+
T Consensus 83 ~~~l 86 (175)
T 2ja9_A 83 DAGF 86 (175)
T ss_dssp CTTC
T ss_pred ccCC
Confidence 5544
No 303
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.93 E-value=0.0061 Score=63.95 Aligned_cols=88 Identities=10% Similarity=0.008 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEY-P-KRTDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g---~~e~Ar~lfe~aL~~~-P-k~~dlw~~y~~le~k~gd~~~a 1871 (1924)
....+++.|.+.++..+.. .++..+||..+.+.. +.++|..+|+.+++.. | .+.+.|+.++-.+++.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~~~--~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCC--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 4677889999998876643 699999999999888 6679999999999998 7 5789999999999999999999
Q ss_pred HHHHHHHHhcCCCchhH
Q 000176 1872 RGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1872 r~lferal~~~~~pk~~ 1888 (1924)
+..|++++. ..|.+.
T Consensus 91 ~~y~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHh--cCCCCH
Confidence 999999999 666544
No 304
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=96.89 E-value=0.0021 Score=69.19 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=61.5
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEe
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~-~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSl 1436 (1924)
.++||+|-|.|+++...+.+|+|++ ..+|++|++++. ...++....|++||.|.++|.+++. +..+.||.
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Ltc 75 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEK-ELEAEIEC 75 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEES
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecC-CCceEEEe
Confidence 3689999999999999999999998 899999999886 3456677889999999999999985 56788884
No 305
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.89 E-value=0.0082 Score=66.52 Aligned_cols=126 Identities=12% Similarity=0.187 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHhc--C----HHHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHc
Q 000176 1768 ADELLYKMIKKF---KHSCKVWLRRVQRLLKQ--Q----QEGVQAVVQRALLSLPRHK-------HIKFISQTAILEFKN 1831 (1924)
Q Consensus 1768 A~~~fe~~lk~~---~~~~~vw~~~a~~l~~~--~----~~~A~~l~~ral~~~p~~~-------~~~~~~~~A~le~~~ 1831 (1924)
.+..|+..+..+ .+...+|+.|+.+..+. . -..-..+++||+..+.... .+++|+.||.+
T Consensus 54 ~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---- 129 (223)
T 4aez_C 54 ERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---- 129 (223)
T ss_dssp HHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc----
Confidence 344444444332 34455666666666555 1 1123456666666654421 25677777763
Q ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000176 1832 GVADRGRSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1901 (1924)
Q Consensus 1832 g~~e~Ar~lfe~aL~~~--Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~ 1901 (1924)
.+.++.+|..+...- -+...+|..|+.++...|++.+|..+|+.+|..... ....+-.+|-.|+.+
T Consensus 130 --~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~--P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 130 --IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK--PFLRFQQKYQQFTHR 197 (223)
T ss_dssp --CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB--SHHHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--cHHHHHHHHHHHHHH
Confidence 135556666665542 344566777777777777777777777777773333 344466666666543
No 306
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.87 E-value=0.0049 Score=59.55 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1818 IKFISQTAILEFKNGV---ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~---~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
..+|..||+.++..++ .++|+.+|+++|+.+|++...+..++..+++.|++++|...|++++.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6899999999975554 79999999999999999999999999999999999999999999998
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.75 E-value=0.021 Score=63.28 Aligned_cols=127 Identities=12% Similarity=0.092 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhc----CCCHHHHHHHHHHHHHh---CC--hHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQY----CDPKKVHLALLGLYERT---EQ--NKLADELLYKMIKKFKHS---------CKVWLRRVQRLL 1794 (1924)
Q Consensus 1733 e~a~~vferAl~~----~~~~~i~~~l~~i~~~~---gk--~e~A~~~fe~~lk~~~~~---------~~vw~~~a~~l~ 1794 (1924)
+..+..|+++++. .++..+|..|+....++ |. -..-..+++++++.|.+. .++|+.|+.+
T Consensus 52 ~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~-- 129 (223)
T 4aez_C 52 QKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY-- 129 (223)
T ss_dssp HHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc--
Confidence 3455566666654 35568888888866654 21 223567888888877432 6678888874
Q ss_pred hcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHH
Q 000176 1795 KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIR 1864 (1924)
Q Consensus 1795 ~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d-lw~~y~~le~k 1864 (1924)
.+.++.+|.-+...-=...+..+|..||.++...|++.+|..+|+..++....=.+ +...|..|..+
T Consensus 130 ---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 130 ---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp ---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 24666788888776666667788999999999999999999999999987644333 55666666544
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=96.70 E-value=0.012 Score=61.36 Aligned_cols=112 Identities=12% Similarity=0.112 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHc
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN---GVADRGRSMFEGILSEYPK---------RTDLWSIYLDQEIRL 1865 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~---g~~e~Ar~lfe~aL~~~Pk---------~~dlw~~y~~le~k~ 1865 (1924)
...+++.|+..|.....++.+.+|..|..+-.+. |. ..-..++|++++.+.+ -..+|..|+++.
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--- 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence 3567788999999987788899999999988743 43 3467889999876533 245899999873
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1866 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1866 gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..++.+|..+...++-.+-+ .||..|+.+.+..|+++.|..||+++++
T Consensus 82 ---~dp~~if~~L~~~~IG~~~A-lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 82 ---SDLHQFFEFLYNHGIGTLSS-PLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp ---SCHHHHHHHHHTTTTTTTBH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCCcHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33889999999988888888 7999999999999999999999999976
No 309
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=96.69 E-value=0.0013 Score=87.60 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=52.3
Q ss_pred CEEEEEEEEEecCeEEEEECC-CeEEEecCCccC--ccc---c--------cC----cccCCCCCCEEEEEEEEeeCC--
Q 000176 763 SVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAV--DGQ---R--------AD----LSKTYYVGQSVRSNILDVNSE-- 822 (1924)
Q Consensus 763 ~~~~G~V~~i~~~G~fV~f~~-~l~Glv~~s~~s--~~~---~--------~~----~~~~f~~Gq~V~~~V~~id~~-- 822 (1924)
..+.|+|.+++++|+||.+.+ |+.||+|.++++ +++ . .. ....|++||.|+|+|.++|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 689999999999999999987 999999999995 322 1 12 246799999999999999998
Q ss_pred -CCeEEEeec
Q 000176 823 -TGRITLSLK 831 (1924)
Q Consensus 823 -~~r~~lSlk 831 (1924)
++|+.||||
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 699999986
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.68 E-value=0.011 Score=62.66 Aligned_cols=123 Identities=12% Similarity=0.195 Sum_probs=83.5
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHhc--CH---HHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHcCCHHHH
Q 000176 1772 LYKMIKKF--KHSCKVWLRRVQRLLKQ--QQ---EGVQAVVQRALLSLPRHK-------HIKFISQTAILEFKNGVADRG 1837 (1924)
Q Consensus 1772 fe~~lk~~--~~~~~vw~~~a~~l~~~--~~---~~A~~l~~ral~~~p~~~-------~~~~~~~~A~le~~~g~~e~A 1837 (1924)
|+..+..+ .+...+|..|+.+.... .- ..-..+++|++..+.... .+++|+.||.+. + .+
T Consensus 6 fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~---~p 79 (164)
T 2wvi_A 6 FEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N---EP 79 (164)
T ss_dssp HHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S---CH
T ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C---CH
Confidence 44444333 35577788888877765 11 123567888888775432 267888888763 3 36
Q ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc
Q 000176 1838 RSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV 1902 (1924)
Q Consensus 1838 r~lfe~aL~~~--Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~ 1902 (1924)
+.+|..+...- -+...+|..|+.++...|++.+|..+|..++.. .......+-.+|-.|+...
T Consensus 80 ~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~--~A~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 80 LDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ--KAEPLERLQSQHRQFQARV 144 (164)
T ss_dssp HHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHH
Confidence 67787776543 356678888999888999999999999999983 3444556788888887654
No 311
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0014 Score=88.86 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=59.9
Q ss_pred CCEEEEEEEEEecCeEEEEECC-CeEEEecCCccC--ccc---c--------cC----cccCCCCCCEEEEEEEEeeCC-
Q 000176 762 NSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAV--DGQ---R--------AD----LSKTYYVGQSVRSNILDVNSE- 822 (1924)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~-~l~Glv~~s~~s--~~~---~--------~~----~~~~f~~Gq~V~~~V~~id~~- 822 (1924)
|....|+|..++++|+||++.+ |+.||+|.++++ +++ . .. ....|++||.|+|+|.++|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 8999999999999999999997 999999999996 332 1 11 346799999999999999974
Q ss_pred --CCeEEEeec
Q 000176 823 --TGRITLSLK 831 (1924)
Q Consensus 823 --~~r~~lSlk 831 (1924)
++|+.||||
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 489999986
No 312
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.45 E-value=0.021 Score=56.13 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000176 1783 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP-----RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1856 (1924)
Q Consensus 1783 ~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p-----~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~ 1856 (1924)
+.-.+.+|.+++.. +++.|..-|+.|++..+ ......++..+|..+++.|+++.|...++++++..|.+..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 34455666666666 77777777777766542 1234567777777777777777777777777777777766654
Q ss_pred HHH
Q 000176 1857 IYL 1859 (1924)
Q Consensus 1857 ~y~ 1859 (1924)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.16 E-value=0.022 Score=60.35 Aligned_cols=108 Identities=6% Similarity=0.046 Sum_probs=84.4
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHH---cCCHH-HHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHH
Q 000176 1803 AVVQRALLSLPRHKHIKFISQTAILEFK---NGVAD-RGRSMFEGILSEYPKR---------TDLWSIYLDQEIRLGDVD 1869 (1924)
Q Consensus 1803 ~l~~ral~~~p~~~~~~~~~~~A~le~~---~g~~e-~Ar~lfe~aL~~~Pk~---------~dlw~~y~~le~k~gd~~ 1869 (1924)
..|+..|.....+..+.+|..|..+... .|..+ .-..++|++++.+-++ ..+|..|+++. +
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~--- 77 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N--- 77 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S---
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C---
Confidence 4577777766667779999999998764 23322 3467899999876442 45899999883 3
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1870 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1870 ~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
..+.+|..+...++-.+-+ .||..|+.+.+..|++..|..||+++++
T Consensus 78 ~p~~if~~L~~~~IG~~~A-lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLA-QFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3778899998888887878 7999999999999999999999999976
No 314
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.04 E-value=0.021 Score=71.46 Aligned_cols=84 Identities=8% Similarity=0.049 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHhC-----CCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSL-----PRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEY-----PKRTD---LWSIYLDQE 1862 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~-----p~~~~-~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~-----Pk~~d---lw~~y~~le 1862 (1924)
++++|..+|+++|... |.+.+ ..++..+|.+|..+|++++|..+|+++|..+ |++.+ .++.++.++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 3555555555555532 22211 2567778888888888888888888888653 44544 578888888
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 000176 1863 IRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1863 ~k~gd~~~ar~lferal~ 1880 (1924)
..+|++++|..+|++|+.
T Consensus 393 ~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 899999999999999887
No 315
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.85 E-value=0.037 Score=54.39 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000176 1818 IKFISQTAILEFKNGVADRGRSMFEGILSEY-------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1888 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~-------Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~ 1888 (1924)
..-...+|..++..|++++|...|+.++... +.+.+++..++..+.+.|+++.|..++++++. +.|...
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 3567789999999999999999999999864 34678999999999999999999999999998 666665
No 316
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.77 E-value=0.041 Score=68.76 Aligned_cols=94 Identities=9% Similarity=-0.065 Sum_probs=77.6
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCchhHHHHHHHH
Q 000176 1830 KNGVADRGRSMFEGILSE-----YPKRTD---LWSIYLDQEIRLGDVDLIRGLFERAISL------SLPPKKMKFLFKKY 1895 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~aL~~-----~Pk~~d---lw~~y~~le~k~gd~~~ar~lferal~~------~~~pk~~k~lw~~y 1895 (1924)
.+|++++|..+|+++|.. .|++.+ .+..++..+..+|++++|..+|++++.. ...|.-+ ..+...
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a-~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA-SMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH-HHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH-HHHHHH
Confidence 468999999999999985 355555 5788899999999999999999999972 2344444 457777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhhC
Q 000176 1896 LEYEKSVGEEERIEYVKQKAMEYVESTLA 1924 (1924)
Q Consensus 1896 l~~E~~~G~~~~~~~v~~rAle~v~~~~~ 1924 (1924)
......+|++++|..+|++|++..+..+|
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG 417 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHG 417 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcC
Confidence 78889999999999999999999887664
No 317
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.27 E-value=0.09 Score=53.15 Aligned_cols=90 Identities=8% Similarity=0.011 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1765 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSL-PRHKHIKFISQTAILEFKNGVADRGRS 1839 (1924)
Q Consensus 1765 ~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~-p~~~~~~~~~~~A~le~~~g~~e~Ar~ 1839 (1924)
...+++.|++.+...+.+...-++||-.+.+. +..++..+|+..+... |. ...+..+.+|..+++.|+|++|+.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~-~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34555666666655556666666676666665 3344666666666554 21 124667777777777777777777
Q ss_pred HHHHHHHhCCCCHHHH
Q 000176 1840 MFEGILSEYPKRTDLW 1855 (1924)
Q Consensus 1840 lfe~aL~~~Pk~~dlw 1855 (1924)
.++.+|+..|.+..+.
T Consensus 96 ~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhCCCCHHHH
Confidence 7777777777765544
No 318
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.14 E-value=0.16 Score=63.52 Aligned_cols=87 Identities=11% Similarity=-0.003 Sum_probs=71.6
Q ss_pred Hhc-CHHHHHHHHHHHHHhCCC---CCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHH
Q 000176 1794 LKQ-QQEGVQAVVQRALLSLPR---HKH---IKFISQTAILEFKNGVADRGRSMFEGILSEY-----PKRTD---LWSIY 1858 (1924)
Q Consensus 1794 ~~~-~~~~A~~l~~ral~~~p~---~~~---~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~-----Pk~~d---lw~~y 1858 (1924)
..+ ++++|.++|+++|..... ..| ..++..+|.++..+|++++|..+++++|..+ |++++ .++.+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 344 899999999999975321 223 3678888999999999999999999999753 44554 58889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 000176 1859 LDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1859 ~~le~k~gd~~~ar~lferal~ 1880 (1924)
+.++..+|++++|..+|++|+.
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999998
No 319
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.02 E-value=0.062 Score=67.20 Aligned_cols=89 Identities=10% Similarity=0.026 Sum_probs=70.2
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhcC-----CC---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC----CCCChH---H
Q 000176 1756 LGLYERTEQNKLADELLYKMIKKFK-----HS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL----PRHKHI---K 1819 (1924)
Q Consensus 1756 ~~i~~~~gk~e~A~~~fe~~lk~~~-----~~---~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~----p~~~~~---~ 1819 (1924)
+.-+.+.|++++|.++|++++.... .+ ..++.+++..+..+ ++++|..+++++|... +.. |+ .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-HPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHHH
Confidence 3345577899999999999997652 23 55677888888888 9999999999999753 322 33 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1820 FISQTAILEFKNGVADRGRSMFEGIL 1845 (1924)
Q Consensus 1820 ~~~~~A~le~~~g~~e~Ar~lfe~aL 1845 (1924)
.+.++|.++..+|++++|..+|++++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 68888999999999999999999986
No 320
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=94.70 E-value=0.05 Score=63.15 Aligned_cols=70 Identities=9% Similarity=0.036 Sum_probs=60.0
Q ss_pred cCCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1455 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
.++||+|-|+|+++......|.|.. ...|++|.+++.. ..++....|++||.|.|+|++++ ....+.|+.
T Consensus 125 P~vGDiVIG~Vt~v~~~~~~VdI~s-~~~a~L~~~~f~G-atk~~r~~f~~GDlV~ArV~s~~-~~~~~eLsc 194 (289)
T 2nn6_G 125 PVKGDHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSFEG-ATKRNRPNVQVGDLIYGQFVVAN-KDMEPEMVC 194 (289)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSS-SSCCCEESCSSSC-CSSCSSSSSCTTCEEEEEEEECC-TTSCCEEEC
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECC-CceeEEehhhcCc-chhhhhhhcCCCCEEEEEEEEcC-CCCceEEEe
Confidence 4899999999999999999999975 6889999998763 34567789999999999999998 455788887
No 321
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.51 E-value=1.7 Score=53.00 Aligned_cols=171 Identities=10% Similarity=0.074 Sum_probs=109.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHH-----
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVH----- 1752 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~-~i~----- 1752 (1924)
+.++..+.+.++.++.+++........+.-.-..-..+--.++++.....+ +.+.-.+++..+++.+... ..|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDA-GTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777766544322210000001222233333333222 3456666777777655432 333
Q ss_pred -HHHHHHHHHhCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC---CC--ChHH
Q 000176 1753 -LALLGLYERTEQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP---RH--KHIK 1819 (1924)
Q Consensus 1753 -~~l~~i~~~~gk~e~A~~~fe~~lk~~~~------~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p---~~--~~~~ 1819 (1924)
..++.+|...|+|.+|..++.++.+.... -.+++..-.+++... ++.+++++|.+|..... .+ -...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 37889999999999999999998876532 245566777777777 99999999998875431 11 1235
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Q 000176 1820 FISQTAILEF-KNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1820 ~~~~~A~le~-~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
+...-|.+++ ..+++..|...|=.++..+..
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 6666777888 799999999999998877643
No 322
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.39 E-value=0.85 Score=55.71 Aligned_cols=165 Identities=13% Similarity=0.053 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCC--hHH--H
Q 000176 1752 HLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHK--HIK--F 1820 (1924)
Q Consensus 1752 ~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~-----~~~vw~~~a~~l~~~--~~~~A~~l~~ral~~~p~~~--~~~--~ 1820 (1924)
.+.++.+|.+.+++++..+++.....-++. ..++-..+.+++... ..+.-.+++..+++-....+ .+. +
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777777665443322 233333444444443 33444445555554322111 112 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchhHHH
Q 000176 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPK---RTD---LWSIYLDQEIRLGDVDLIRGLFERAISLS----LPPKKMKF 1890 (1924)
Q Consensus 1821 ~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk---~~d---lw~~y~~le~k~gd~~~ar~lferal~~~----~~pk~~k~ 1890 (1924)
-.++|.+++..|++.+|.+++.++++...+ ... ++..-++++...+++.+++.+|..|.+.. .+|.-+-.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 337788888888888888888887775433 333 34444556677788888888887776521 34444422
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 000176 1891 LFKKYLEYEK-SVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1891 lw~~yl~~E~-~~G~~~~~~~v~~rAl 1916 (1924)
+...-.-+.. ..++++.|...|-.|.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3333333455 5677777777776664
No 323
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=94.19 E-value=0.071 Score=61.90 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=61.6
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEee
Q 000176 1365 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1437 (1924)
Q Consensus 1365 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSlk 1437 (1924)
.++||+|-|+|+++....+.|+|.....|.++++++. ...+.....|++||.|.++|++++. .+.++||.-
T Consensus 125 P~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc~ 195 (289)
T 2nn6_G 125 PVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVCI 195 (289)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEECS
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEec
Confidence 4799999999999999999999999899999999876 3456677889999999999999984 566888873
No 324
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.36 E-value=0.58 Score=47.30 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD---RGRSMFEGILSEY-P-KRTDLWSIYLDQEIRLGDVDLI 1871 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e---~Ar~lfe~aL~~~-P-k~~dlw~~y~~le~k~gd~~~a 1871 (1924)
....++..|.+++...+.. .++...||..+.+..+.. +|..+++.+++.. | .+.+..+.++-.+++.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s--~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 4677888899888865533 589999999998777654 5999999999987 6 5667788888899999999999
Q ss_pred HHHHHHHHhcCCCchh
Q 000176 1872 RGLFERAISLSLPPKK 1887 (1924)
Q Consensus 1872 r~lferal~~~~~pk~ 1887 (1924)
|..++.+|. ..|.+
T Consensus 94 ~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHH--hCCCC
Confidence 999999999 66644
No 325
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.61 E-value=2.2 Score=57.47 Aligned_cols=166 Identities=14% Similarity=-0.050 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000176 1679 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1758 (1924)
Q Consensus 1679 ~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i 1758 (1924)
...+.|+...+..+.|....+... .-+.+....+ +.+.|.++ ++..+....|..++.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~----------------~~f~~~l~~~--~~~~A~~~----~~~~~~~~~W~~la~~ 690 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD----------------QKFELALKVG--QLTLARDL----LTDESAEMKWRALGDA 690 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH----------------HHHHHHHHHT--CHHHHHHH----HTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc----------------hheehhhhcC--CHHHHHHH----HHhhCcHhHHHHHHHH
Confidence 556667777777777665553211 1123345566 34666544 3445667888888888
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1838 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar 1838 (1924)
+.+.++++.|...|.++-. ++.+..++.. ... .+.+..+|......|+++.|.
T Consensus 691 al~~~~~~~A~~~y~~~~d--------------------~~~l~~l~~~-----~~~--~~~~~~~~~~a~~~~~~~~A~ 743 (814)
T 3mkq_A 691 SLQRFNFKLAIEAFTNAHD--------------------LESLFLLHSS-----FNN--KEGLVTLAKDAETTGKFNLAF 743 (814)
T ss_dssp HHHTTCHHHHHHHHHHHTC--------------------HHHHHHHHHH-----TTC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHccC--------------------hhhhHHHHHH-----cCC--HHHHHHHHHHHHHcCchHHHH
Confidence 8888888888888887641 3333333222 011 234445555555566666665
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHHcCCHH
Q 000176 1839 SMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK--MKFLFKKYLEYEKSVGEEE 1906 (1924)
Q Consensus 1839 ~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~--~k~lw~~yl~~E~~~G~~~ 1906 (1924)
.+|.++ .-+..-++++.+.++++.|..+-++ ..|.. +..+...|.+.....|+.+
T Consensus 744 ~~~~~~--------g~~~~a~~~~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 744 NAYWIA--------GDIQGAKDLLIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp HHHHHH--------TCHHHHHHHHHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHc--------CCHHHHHHHHHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHhccchh
Confidence 555442 1233344555666677766665554 33334 4456666665555566544
No 326
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.61 E-value=0.6 Score=47.35 Aligned_cols=71 Identities=7% Similarity=0.045 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000176 1782 SCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1853 (1924)
Q Consensus 1782 ~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~d 1853 (1924)
++..-++||-.+.+. +..++..+|+..++..|.. .-+.++.+|.-+++.|++++|+...+.+|+..|.+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 444555555445444 3445555555555554432 1355555555666666666666666666666665544
No 327
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.67 E-value=2.2 Score=43.87 Aligned_cols=73 Identities=7% Similarity=0.049 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHhc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 000176 1781 HSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1854 (1924)
Q Consensus 1781 ~~~~vw~~~a~~l~~~----~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dl 1854 (1924)
.+...-++||-.|.+. +..++..+|+..+...|.. .-+..+.+|.-+++.|+|++||...+.+|+..|.+..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 4566666666666655 4556667777777666543 24667777777777777777777777777777776554
No 328
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.75 E-value=1.8 Score=57.16 Aligned_cols=55 Identities=5% Similarity=-0.038 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1821 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875 (1924)
Q Consensus 1821 ~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lf 1875 (1924)
+..-|.|+...|+++-|..+-.+++...|....-|..++..|++.|+++.|.-.+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 3334445555555555555555555555555555555555555555555554433
No 329
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.31 E-value=18 Score=44.91 Aligned_cols=98 Identities=9% Similarity=0.027 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCchhH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEGILSEY----PK--RTDLWSIYLDQEIRLGDVDLIRGLFERAIS----LSLPPKKM 1888 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~----Pk--~~dlw~~y~~le~k~gd~~~ar~lferal~----~~~~pk~~ 1888 (1924)
.+...+|.+++..|++.+|..++..+.... ++ ..++|..-++++...+|+.+|+.++.++.. ...+|.-.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 556667777777777777777777765421 11 133566666666677777777777776532 11222222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000176 1889 KFLFKKYLEYEKSVGEEERIEYVKQKAM 1916 (1924)
Q Consensus 1889 k~lw~~yl~~E~~~G~~~~~~~v~~rAl 1916 (1924)
-.++..++.+....+++.+|-..|..+.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1233333334444456655555554443
No 330
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.78 E-value=3.5 Score=55.40 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=88.1
Q ss_pred HHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000176 1757 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1835 (1924)
Q Consensus 1757 ~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e 1835 (1924)
.++.+.|+++.|.++.+. .+++..|..+|+.+++. +++.|..+|.++= + +.....++...|+.+
T Consensus 660 ~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~-----d-----~~~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAH-----D-----LESLFLLHSSFNNKE 724 (814)
T ss_dssp HHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-----C-----HHHHHHHHHHTTCHH
T ss_pred ehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc-----C-----hhhhHHHHHHcCCHH
Confidence 345678999999887543 36889999999999999 9999999999872 1 334445555688888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH----HHHHH
Q 000176 1836 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE----RIEYV 1911 (1924)
Q Consensus 1836 ~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E~~~G~~~----~~~~v 1911 (1924)
....+-+.+... .+ +.....++.+.|++++|.++|...-. |..-+.+-+.++..+ .+...
T Consensus 725 ~~~~~~~~a~~~-~~----~~~A~~~~~~~g~~~~a~~~~~~~~~-----------~~~A~~lA~~~~~~~~~i~~~~~~ 788 (814)
T 3mkq_A 725 GLVTLAKDAETT-GK----FNLAFNAYWIAGDIQGAKDLLIKSQR-----------FSEAAFLGSTYGLGDNEVNDIVTK 788 (814)
T ss_dssp HHHHHHHHHHHT-TC----HHHHHHHHHHHTCHHHHHHHHHHTTC-----------HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-Cc----hHHHHHHHHHcCCHHHHHHHHHHcCC-----------hHHHHHHHHHhCCChHHHHHHHHH
Confidence 766665554432 22 22233456678999999999876322 666666777787554 44444
Q ss_pred HHHHHH
Q 000176 1912 KQKAME 1917 (1924)
Q Consensus 1912 ~~rAle 1917 (1924)
+...|+
T Consensus 789 ~~~~L~ 794 (814)
T 3mkq_A 789 WKENLI 794 (814)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 331
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.19 E-value=2.1 Score=43.40 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV---ADRGRSMFEGILSEYP-KRTDLWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~---~e~Ar~lfe~aL~~~P-k~~dlw~~y~~le~k~gd~~~ar~ 1873 (1924)
....++-|.+=+ ..+...++...||..+.+..+ ..+|..+++.+++..| .+.+.|+.++--+.+.|++++||.
T Consensus 23 L~~l~~qy~~E~---~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~ 99 (134)
T 3o48_A 23 LEILRQQVVSEG---GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR 99 (134)
T ss_dssp HHHHHHHHHHTT---GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHH
Confidence 344445554433 233345888999988887664 5689999999999999 467889999999999999999999
Q ss_pred HHHHHHhcCCCchhH
Q 000176 1874 LFERAISLSLPPKKM 1888 (1924)
Q Consensus 1874 lferal~~~~~pk~~ 1888 (1924)
..++++. ..|.+.
T Consensus 100 y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 100 YVDTLFE--HERNNK 112 (134)
T ss_dssp HHHHHHT--TCTTCH
T ss_pred HHHHHHh--hCCCCH
Confidence 9999999 666544
No 332
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=87.48 E-value=3.5 Score=55.55 Aligned_cols=116 Identities=9% Similarity=-0.058 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHH
Q 000176 1780 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL--PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE-YPKRTDLW 1855 (1924)
Q Consensus 1780 ~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~--p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~-~Pk~~dlw 1855 (1924)
......|..+.+.+.+. +.++|.++|.++-... .-...+..|..+..-+.+.|++++|+.+|+..... ..-+.-.|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33455688889999988 9999999998865321 01123578999999999999999999999998765 33356778
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 000176 1856 SIYLDQEIRLGD-VDLIRGLFERAISLSLPPKKMKFLFKKYLE 1897 (1924)
Q Consensus 1856 ~~y~~le~k~gd-~~~ar~lferal~~~~~pk~~k~lw~~yl~ 1897 (1924)
+.+++-+.+.|. .+.|..+|+......+.|+.. ++.-.+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v--tY~~ll~ 244 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL--FTAVLLS 244 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH--HHHSCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh--hcccccC
Confidence 889999999987 578999999999988998765 5554443
No 333
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.26 E-value=9.9 Score=47.38 Aligned_cols=172 Identities=10% Similarity=0.020 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCC-
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ----YCDP- 1748 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~-i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~----~~~~- 1748 (1924)
..++..++..++..|++.+|..+....+.. ...-+..+++.+|+.-+.++...++ ...|...++++.. ..++
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d--~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGD--YSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhhcccCCcH
Confidence 456788999999999999999999887743 2333456778899999999999994 5999999998743 2222
Q ss_pred H---HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC--CCHHHHHHHHH---HH-Hhc--CHHHHHHHHHHHHHhCCCCCh
Q 000176 1749 K---KVHLALLGLYERTEQNKLADELLYKMIKKFK--HSCKVWLRRVQ---RL-LKQ--QQEGVQAVVQRALLSLPRHKH 1817 (1924)
Q Consensus 1749 ~---~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~--~~~~vw~~~a~---~l-~~~--~~~~A~~l~~ral~~~p~~~~ 1817 (1924)
. ..+..++.++...++|.+|...|..+...+. .++.-|..... ++ +-. ..+. ..++.+... .+....
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~-~~ll~~~~~-~~~~~~ 292 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQ-NDLIHKIQN-DNNLKK 292 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTT-HHHHHSHHH-HSSCHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchH-HHHHHHHhh-cccccc
Confidence 1 6788888899999999999999999987662 34444432111 11 111 1111 112222221 222234
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCC
Q 000176 1818 IKFISQTAILEFKN--GVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1818 ~~~~~~~A~le~~~--g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
+..+..++..+... .+++.....|+..|..+|.
T Consensus 293 l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 293 LESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp HHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred cHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 56667777766643 3677777778777766553
No 334
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.44 E-value=3.2 Score=42.67 Aligned_cols=86 Identities=13% Similarity=0.018 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV---ADRGRSMFEGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRG 1873 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~---~e~Ar~lfe~aL~~~Pk-~~dlw~~y~~le~k~gd~~~ar~ 1873 (1924)
....++-|.+-+. .....++...||..+.+..+ ..+|..+|+.+++..|. +.+..+.++--+++.|++++||.
T Consensus 22 L~~lr~qY~~E~~---~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~ 98 (144)
T 1y8m_A 22 LEILRQQVVSEGG---PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR 98 (144)
T ss_dssp HHHHHHHHHHTTS---TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHhcc---CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHH
Confidence 4445555554322 23346899999999987764 56899999999999995 56677777888899999999999
Q ss_pred HHHHHHhcCCCchhH
Q 000176 1874 LFERAISLSLPPKKM 1888 (1924)
Q Consensus 1874 lferal~~~~~pk~~ 1888 (1924)
..+++|. ..|.+.
T Consensus 99 y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 99 YVDTLFE--HERNNK 111 (144)
T ss_dssp HHHHHHH--TCCCCH
T ss_pred HHHHHHh--cCCCcH
Confidence 9999999 665443
No 335
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.05 E-value=3 Score=44.04 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1819 KFISQTAILEFKNGVADRGRSMFEG 1843 (1924)
Q Consensus 1819 ~~~~~~A~le~~~g~~e~Ar~lfe~ 1843 (1924)
++.++.|..+.+.++++.|..+++.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 4445555555555555555555554
No 336
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=85.61 E-value=5.4 Score=53.82 Aligned_cols=96 Identities=9% Similarity=-0.025 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh-cCCCHHHHHH
Q 000176 1715 NIWVAYFNLENEYGNPPEEAVVKVFQRALQ-----YCDPKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLR 1788 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~e~a~~vferAl~-----~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~-~~~~~~vw~~ 1788 (1924)
.-+.++++.+...| ..++|..+|++.-+ ..|+--.|..+++-|.+.|+.++|.++|+.|... +..+.-.|..
T Consensus 128 ~TynaLIdglcK~G--~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 128 QRLLAFFKCCLLTD--QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35677888888888 67999999977543 3566789999999999999999999999999875 4677888888
Q ss_pred HHHHHHhc-C-HHHHHHHHHHHHHhC
Q 000176 1789 RVQRLLKQ-Q-QEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1789 ~a~~l~~~-~-~~~A~~l~~ral~~~ 1812 (1924)
+...+-+. + .++|.++|++|...-
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88888777 4 678889999998764
No 337
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=85.00 E-value=1.1 Score=56.02 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=47.0
Q ss_pred CCCcEEEEEEEEeecceEEEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1456 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~GvFV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
++|+.+.|.| |++. +..|++|++++..+ -.....|+.||.|+++|.++|+.+++|.+..
T Consensus 402 ~~g~~f~g~v---------v~l~--~~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVV---------VDRR--GAQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEE---------EEEE--TTEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEE---------EEEe--CcEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 6899898865 4454 35799999999765 2234679999999999999999999998753
No 338
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.73 E-value=6 Score=48.39 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=77.8
Q ss_pred HHhCChHHHHHHHHHHHHhcCCC--H----HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000176 1760 ERTEQNKLADELLYKMIKKFKHS--C----KVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1833 (1924)
Q Consensus 1760 ~~~gk~e~A~~~fe~~lk~~~~~--~----~vw~~~a~~l~~~~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~ 1833 (1924)
...++.+.|.+.+.+++..|... + .-|.. ..+.-|++.. ..+...++..+...|+
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~-----------~~r~~l~~~~--------~~a~~~~~~~~l~~g~ 186 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVE-----------PFATALVEDK--------VLAHTAKAEAEIACGR 186 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHH-----------HHHHHHHHHH--------HHHHHHHHHHHHHTTC
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHH-----------HHHHHHHHHH--------HHHHHHHHHHHHHCCC
Confidence 34688999999999999988422 1 11221 1122222221 2455667888889999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000176 1834 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1834 ~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lferal~ 1880 (1924)
+++|...+++++..+|-+..+|..++..+.+.|+...|...|+++-.
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988765
No 339
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.57 E-value=6.4 Score=41.58 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=54.7
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhC---CC----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC------
Q 000176 1788 RRVQRLLKQ-QQEGVQAVVQRALLSL---PR----HKHIKFISQTAILEFKNGVADRGRSMFEGILSEY---PK------ 1850 (1924)
Q Consensus 1788 ~~a~~l~~~-~~~~A~~l~~ral~~~---p~----~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~---Pk------ 1850 (1924)
..+..++.. .++.|+-+...++... |. ..+.+++..||+.+|..+++-+|...|+++|+.. |+
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 333444444 5566655555544332 11 1123466666666666666666666666665321 11
Q ss_pred ----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1851 ----------------RTDLWSIYLDQEIRLGDVDLIRGLFERA 1878 (1924)
Q Consensus 1851 ----------------~~dlw~~y~~le~k~gd~~~ar~lfera 1878 (1924)
..++-+..+..+++.++++.|..+++.+
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 2357777888899999999999998863
No 340
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=83.72 E-value=23 Score=37.91 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=21.6
Q ss_pred HhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHH
Q 000176 1761 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1808 (1924)
Q Consensus 1761 ~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ra 1808 (1924)
+.|+++.|.++.+.+ ++...|..+++..+.+ +++-|...|+++
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344555555544332 3455555555555555 555555555544
No 341
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.74 E-value=5.3 Score=52.79 Aligned_cols=110 Identities=7% Similarity=-0.013 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHH--HHhC-ChHHHHHHHHHHHHhc------------------CCCHHHHHHHHH
Q 000176 1733 EAVVKVFQRALQYCDPKKVHLALLGLY--ERTE-QNKLADELLYKMIKKF------------------KHSCKVWLRRVQ 1791 (1924)
Q Consensus 1733 e~a~~vferAl~~~~~~~i~~~l~~i~--~~~g-k~e~A~~~fe~~lk~~------------------~~~~~vw~~~a~ 1791 (1924)
+.|...|++..+..|...++++.+.+. ...+ +--+|..+...+++.+ +....+...-+.
T Consensus 266 ~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~ 345 (754)
T 4gns_B 266 DFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTN 345 (754)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHH
Confidence 667777777777766655544433332 2221 2234455554444321 111234555677
Q ss_pred HHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1792 RLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1844 (1924)
Q Consensus 1792 ~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~a 1844 (1924)
|++.. +++-|..+-++|+.+.|.. ...|..+|..|...|++|.|.-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPse--F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDS--FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchh--hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 88888 9999999999999999887 689999999999999999998776655
No 342
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.07 E-value=7.4 Score=48.31 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----H-
Q 000176 1675 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----K- 1749 (1924)
Q Consensus 1675 ~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl~lWiayl~le~~~g~~~~e~a~~vferAl~~~~~----~- 1749 (1924)
..++..++.++.+.|++++|.++|.++...... ...++.+|+..+.+....+++ ..+...+++|-..... .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~kid~~l~~irl~l~~~d~--~~~~~~~~ka~~~~~~~~d~~~ 206 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS--TGAKIDVMLTIARLGFFYNDQ--LYVKEKLEAVNSMIEKGGDWER 206 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC--CCSHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHTTCCCTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhhhcCCCHHH
Confidence 346788999999999999999999999986654 345789999999999999954 9999999999765432 1
Q ss_pred --HHHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Q 000176 1750 --KVHLALLGLYERTEQNKLADELLYKMIKKFK 1780 (1924)
Q Consensus 1750 --~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~ 1780 (1924)
.+....+.++...++|..|...|-.++..|.
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 3444455566678999999999999888774
No 343
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=78.24 E-value=4.7 Score=44.87 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=50.2
Q ss_pred cCCCceEEEEEEEEecCeEEEEecCceEEEEeccccCCCCC---C------CCc--cccCCCCCEEEEEEEEEeCCC
Q 000176 319 LVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP---T------TNW--KNDYNQHKKVNARILFVDPTS 384 (1924)
Q Consensus 319 l~pG~~v~~~V~~v~~~Gl~v~~~~~~~g~v~~~hl~~~~~---~------~~~--~~~~~~G~~v~arVl~~~~~~ 384 (1924)
..+|+++.|.|+.+.++|+-+.++|.|+.+|+..+|+.... . .-| .+.-++|..||.||..++...
T Consensus 127 Pf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~ 203 (214)
T 2rf4_A 127 PQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTG 203 (214)
T ss_dssp CCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCS
T ss_pred cCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecC
Confidence 45799999999999999999988999999999999864431 0 111 112246999999999887543
No 344
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.86 E-value=19 Score=45.02 Aligned_cols=99 Identities=11% Similarity=0.188 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHhcC----CC---HHHHHHHHHHHHHhCChHHHHHHHHHHHHhc
Q 000176 1715 NIWVAYFNLENEYGNPPE--------EAVVKVFQRALQYC----DP---KKVHLALLGLYERTEQNKLADELLYKMIKKF 1779 (1924)
Q Consensus 1715 ~lWiayl~le~~~g~~~~--------e~a~~vferAl~~~----~~---~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~ 1779 (1924)
.+|.-|.......+.... ...+..+-.++++. +. ..+|..++..|...+.|+.|..+..++. |
T Consensus 182 k~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--f 259 (523)
T 4b4t_S 182 KLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--Y 259 (523)
T ss_dssp ---------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--S
T ss_pred HHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--C
Confidence 567766665555552100 12344555555443 33 2899999999999999999999999885 5
Q ss_pred CCC---HHH----HHHHHHHHHhc-CHHHHHHHHHHHHHhCCCC
Q 000176 1780 KHS---CKV----WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1815 (1924)
Q Consensus 1780 ~~~---~~v----w~~~a~~l~~~-~~~~A~~l~~ral~~~p~~ 1815 (1924)
|.. ..- .+.+|.+..-+ +|.+|.+.|..|+..+|..
T Consensus 260 P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 260 PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 532 222 33345555556 9999999999999988865
No 345
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=75.91 E-value=13 Score=32.53 Aligned_cols=52 Identities=29% Similarity=0.576 Sum_probs=42.6
Q ss_pred CCCCCCCCCCEEEEEEEEEeCCeEEEEEccccccchhhHhhhhcccCCCcEEEEEEEEEEc--ceEEEEEcCCeEEEeeC
Q 000176 538 KPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK--HGCFVRFYNGVQGFAPR 615 (1924)
Q Consensus 538 ~p~~~f~vG~~vk~rVl~v~~~~l~lT~K~~Lv~~~~~~~~~~~~~~~G~~~~G~V~~i~~--~G~~V~f~~~v~g~lp~ 615 (1924)
.+..+|++|+.|.|| | ..|..+.|+|++|.. .-|+|+|+.+..-++..
T Consensus 9 ~~~~~f~vGddVLA~---------------------------w---tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~ 58 (66)
T 2eqj_A 9 KPACKFEEGQDVLAR---------------------------W---SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLW 58 (66)
T ss_dssp CCCCCSCTTCEEEEE---------------------------C---TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred cccccccCCCEEEEE---------------------------E---ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEe
Confidence 455689999999884 1 249999999999986 35899999999999988
Q ss_pred cccC
Q 000176 616 SELG 619 (1924)
Q Consensus 616 sel~ 619 (1924)
.+|.
T Consensus 59 kdi~ 62 (66)
T 2eqj_A 59 KDIQ 62 (66)
T ss_dssp TTEE
T ss_pred eccc
Confidence 7763
No 346
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=75.75 E-value=6.8 Score=43.56 Aligned_cols=64 Identities=8% Similarity=0.018 Sum_probs=49.3
Q ss_pred CCCEEEEEEEEEecCeEEEEECCCeEEEecCCccCcccccCcc------------cCCCCCCEEEEEEEEeeCCCC
Q 000176 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS------------KTYYVGQSVRSNILDVNSETG 824 (1924)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f~~~l~Glv~~s~~s~~~~~~~~------------~~f~~Gq~V~~~V~~id~~~~ 824 (1924)
+|+++.|+|.++++.|+.+-..|-+..++|...+.++..-++. +.-++|+.|+.||.+++...+
T Consensus 129 ~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 129 VGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp TTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSS
T ss_pred CCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCC
Confidence 5999999999999988888778888899999998643221111 122479999999999987554
No 347
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.66 E-value=13 Score=45.98 Aligned_cols=119 Identities=11% Similarity=0.049 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHhc-CHHHHHH
Q 000176 1732 EEAVVKVFQRALQYCDP----KKVHLALLGLYERTEQNKLADELLYKMIKKF---KHSCKVWLRRVQRLLKQ-QQEGVQA 1803 (1924)
Q Consensus 1732 ~e~a~~vferAl~~~~~----~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~---~~~~~vw~~~a~~l~~~-~~~~A~~ 1803 (1924)
.+...+..+.+.+.+.. ...+..++.+|.+.|++++|.++|.++.... .....+|+..++..+.. ++..|..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34455555555543322 2688999999999999999999999988754 35578888888888888 9999999
Q ss_pred HHHHHHHhCCCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1804 VVQRALLSLPRHKHI----KFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1804 l~~ral~~~p~~~~~----~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
.+.+|-.......++ .+....|.++...+++..|...|-.++..+..
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 999987654332222 34444555566788999999999888877643
No 348
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=73.56 E-value=4 Score=41.15 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCcEEEEEEEEEEcceEEEEEcCCeE--EEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEeeCCCCcc
Q 000176 585 DRLITHGWITKIEKHGCFVRFYNGVQ--GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662 (1924)
Q Consensus 585 ~G~~~~G~V~~i~~~G~~V~f~~~v~--g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~~~~~~ 662 (1924)
.|..+.|+|+.+.+.+++|.|.|.-. --+|.+++..-+-......|.+||.|.|.--.-|.
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~----------------- 76 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQ----------------- 76 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC--------------------
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCC-----------------
Confidence 49999999999999999999987654 57888888544332333579999999984332111
Q ss_pred cccccCCCCEEEEEEEEEccCcEEEEEEecC---ceeEEEeCCcCC
Q 000176 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG---YSKGTIPTEHLA 705 (1924)
Q Consensus 663 ~~~~~~~G~iv~g~V~~~~~~g~~V~l~~~~---~~~g~i~~~~Ls 705 (1924)
.+-.=-.|+|+.+..+-..|+. .+ ...=+++..+|.
T Consensus 77 -----ep~gWw~a~I~~~kg~f~~V~y--~~~~~~~~EiV~~~rlR 115 (128)
T 3h8z_A 77 -----EPCGWWLARVRMMKGDFYVIEY--AACDATYNEIVTLERLR 115 (128)
T ss_dssp -----CCCEEEEEEEEEEETTEEEEEE--TTC----CEEECGGGEE
T ss_pred -----CcCccEEEEEEEeeCCEEEEEE--cCCCCCcceEEehhheE
Confidence 1112345777777776666765 22 344455555443
No 349
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=71.28 E-value=33 Score=41.73 Aligned_cols=109 Identities=9% Similarity=-0.042 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1875 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~-~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lf 1875 (1924)
+.+.|.+.|.+|+.......-..+ . ... .+..+.-|+... ..+...+++.+...|+++.|...+
T Consensus 130 ~~~~a~~~l~~Al~L~rG~~L~~~----~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~~a~~~l 194 (388)
T 2ff4_A 130 RFEQASRHLSAALREWRGPVLDDL----R-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRASAVIAEL 194 (388)
T ss_dssp CHHHHHHHHHHHHTTCCSSTTGGG----T-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCC----C-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 567777888888877644310000 0 011 122223333221 245666788888999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000176 1876 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1923 (1924)
Q Consensus 1876 eral~~~~~pk~~k~lw~~yl~~E~~~G~~~~~~~v~~rAle~v~~~~ 1923 (1924)
++++. ..|-+- .+|..++......|+...|..+|+++.+.+...+
T Consensus 195 ~~~~~--~~P~~E-~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL 239 (388)
T 2ff4_A 195 EALTF--EHPYRE-PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL 239 (388)
T ss_dssp HHHHH--HSTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 99998 555444 5899999999999999999999999998877644
No 350
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=70.24 E-value=77 Score=33.87 Aligned_cols=129 Identities=17% Similarity=0.122 Sum_probs=81.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--C
Q 000176 1720 YFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--Q 1797 (1924)
Q Consensus 1720 yl~le~~~g~~~~e~a~~vferAl~~~~~~~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~--~ 1797 (1924)
-+.+.+..| +.+.|.++.+.. +....|..++......|+++-|...|+++-. ... ..|++.. +
T Consensus 11 rF~LAL~lg--~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----~~~-----L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYG--NLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS----FDK-----LSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----HHH-----HHHHHHHHTC
T ss_pred HHHHHHhcC--CHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----HHH-----HHHHHHHhCC
Confidence 345667778 458888776654 6679999999999999999999999988752 122 2223222 5
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000176 1798 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1877 (1924)
Q Consensus 1798 ~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~lfer 1877 (1924)
.+....+-+.|.... + .-..| +.++..|+++++..+|.+. .+ |..-+-+...+|-.+.|..+.+.
T Consensus 76 ~e~L~kla~iA~~~g--~----~n~af-~~~l~lGdv~~~i~lL~~~-----~r---~~eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE--D----FGSML-LNTFYNNSTKERSSIFAEG-----GS---LPLAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHHTT--C----HHHHH-HHHHHHTCHHHHHHHHHHT-----TC---HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc--c----HHHHH-HHHHHcCCHHHHHHHHHHC-----CC---hHHHHHHHHHcCcHHHHHHHHHH
Confidence 666555555554332 1 11222 2344579999999998764 22 22222233346777778887765
Q ss_pred H
Q 000176 1878 A 1878 (1924)
Q Consensus 1878 a 1878 (1924)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 4
No 351
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=68.72 E-value=8.2 Score=37.73 Aligned_cols=55 Identities=9% Similarity=-0.051 Sum_probs=46.6
Q ss_pred CCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcccCCCCC-----CC-CCCCCCCCCEEEEE
Q 000176 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG-----CE-PSSMYHVGQVVKCR 639 (1924)
Q Consensus 585 ~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~sel~~~~~-----~~-~~~~~~vGq~v~~r 639 (1924)
.|....+.|+++.+.++-|.+.++-.+.||...|.|... .. +.+.+++|++|.++
T Consensus 33 ~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 33 SDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred cCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 488999999999999999999888888899999987531 23 45679999999998
No 352
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=66.77 E-value=7.3 Score=39.28 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=38.8
Q ss_pred CCCEEEEEEEEEecCeEEEEECCCeE--EEecCCccCcccccCcccCCCCCCEEEEE
Q 000176 761 PNSVVHGYVCNIIETGCFVRFLGRLT--GFAPRSKAVDGQRADLSKTYYVGQSVRSN 815 (1924)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f~~~l~--Glv~~s~~s~~~~~~~~~~f~~Gq~V~~~ 815 (1924)
.|....|+|+.|.+.+++|.|.|... --+|.+++..-+-......|.+||.|.|.
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~ 70 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVY 70 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEE
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEE
Confidence 38999999999999999999988643 35555555432222223569999999995
No 353
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=64.96 E-value=13 Score=36.39 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=47.9
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc--c---CC-CCccCCCCcEEEEE
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--V---ES-PEKEFPIGKLVAGR 1421 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~--~---~~-~~~~f~~G~~V~~k 1421 (1924)
..|+.+.+.|.++++.++-|.+..+-.+.|+..+|.|.. . +. +.+.+++|+.|.++
T Consensus 32 ~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 32 NSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred ccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 358899999999999999999988888899999999974 2 33 55669999999987
No 354
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.83 E-value=22 Score=40.63 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=80.8
Q ss_pred HHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 000176 1792 RLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1870 (1924)
Q Consensus 1792 ~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ 1870 (1924)
-+++. ..++|.+.++..++..|.+ ......|.+++.-.|+++||..-++-+.+.+|.....-..|.++.. -++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~d--a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~----aE~ 79 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKD--ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK----AAQ 79 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH----HHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH----HHH
Confidence 34555 8999999999999999998 5899999999999999999999999999999987665444433321 112
Q ss_pred HHHHHHHHHhcC----CCchhHHHHHHHHH-HH--HHHcCCHHHHHHHHHHHHHHH
Q 000176 1871 IRGLFERAISLS----LPPKKMKFLFKKYL-EY--EKSVGEEERIEYVKQKAMEYV 1919 (1924)
Q Consensus 1871 ar~lferal~~~----~~pk~~k~lw~~yl-~~--E~~~G~~~~~~~v~~rAle~v 1919 (1924)
.|. .++.-. +.-... . |...+ .. ....|+.+.+..+-++|++..
T Consensus 80 ~R~---~vfaG~~~P~~~g~~~-~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 80 ARK---DFAQGAATAKVLGENE-E-LTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp HHH---HHTTSCCCEECCCSCH-H-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHH---HHHcCCCCCCCCCCCH-H-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 222 122211 111222 2 44333 22 344699999999999998764
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.35 E-value=58 Score=45.69 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=13.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 000176 1681 YMAFMLSMADVEKARSIAERAL 1702 (1924)
Q Consensus 1681 y~~~~~~~~e~dkAr~v~eraL 1702 (1924)
.+..++..|++++|...|++|-
T Consensus 848 ~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHh
Confidence 3444566667777777776664
No 356
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=64.24 E-value=9.2 Score=47.81 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=46.0
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEEEeCCCCEEEEEe
Q 000176 1366 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1436 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~vd~e~~ri~LSl 1436 (1924)
..|+...|.|..+ . +..|+|+++++...+ .....|++||.|+++|.++|...++|.+..
T Consensus 402 ~~g~~f~g~vv~l---------~-~~~glV~v~~l~~d~--~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVVVDR---------R-GAQATLLIPDLAFDV--QVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEEEEE---------E-TTEEEEEEGGGTEEE--EEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEEEE---------e-CcEEEEEECCCCeEE--ecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 5799999887543 2 347888888887652 123468999999999999999999998765
No 357
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.47 E-value=28 Score=43.65 Aligned_cols=100 Identities=7% Similarity=0.075 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhCChHH----------HHHHHHHHHHhc------CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Q 000176 1750 KVHLALLGLYERTEQNKL----------ADELLYKMIKKF------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1812 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~----------A~~~fe~~lk~~------~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~ 1812 (1924)
++|+-|..+++..++... .+..+-.++... .....+|..+.+.|+.. .++.|..+..++. +
T Consensus 182 k~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--f 259 (523)
T 4b4t_S 182 KLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--Y 259 (523)
T ss_dssp ---------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--S
T ss_pred HHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--C
Confidence 678888888887776543 233333333221 12367899999999999 9999999999984 6
Q ss_pred CCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000176 1813 PRH-----KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1851 (1924)
Q Consensus 1813 p~~-----~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~ 1851 (1924)
|.. ..+...+..|.+..-+++|.+|...|..|++..|..
T Consensus 260 P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 260 PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 643 224566667889999999999999999999988753
No 358
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=62.28 E-value=3.4e+02 Score=34.88 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 000176 1671 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI 1705 (1924)
Q Consensus 1671 ~P~s~~~W~~y~~~~~~~~e~dkAr~v~eraL~~i 1705 (1924)
.|.+...-..|+......|+..+|...+..+-.+-
T Consensus 98 ~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 46788888888888888898887877777666443
No 359
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=61.02 E-value=3.6e+02 Score=34.70 Aligned_cols=116 Identities=12% Similarity=0.070 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000176 1797 QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1874 (1924)
Q Consensus 1797 ~~~~A~~l~~ral~~~p~~~--~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~gd~~~ar~l 1874 (1924)
+.+.|..+|.+.-....-.. ...++..+|.-.+..+...++...+.+.....+ +..+..-++.+.++.|+...|...
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHH
Confidence 78889999987765443321 123344444334445535677777777665443 444444556677788999999999
Q ss_pred HHHHHhcCCCchhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000176 1875 FERAISLSLPPKKMK-FLFKKYLEYEKSVGEEERIEYVKQKAME 1917 (1924)
Q Consensus 1875 feral~~~~~pk~~k-~lw~~yl~~E~~~G~~~~~~~v~~rAle 1917 (1924)
|+++-. -...... .+|... .....|+.+.++.+|+++.+
T Consensus 308 ~~~l~~--~~~~~~r~~YW~~r--a~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 308 LARLPM--EAKEKDEWRYWQAD--LLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHSCT--TGGGSHHHHHHHHH--HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHccc--cccccHhHHHHHHH--HHHHcCCHHHHHHHHHHHhc
Confidence 988544 1112221 345544 23557999999999988864
No 360
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=59.44 E-value=1.1e+02 Score=34.96 Aligned_cols=116 Identities=15% Similarity=-0.001 Sum_probs=73.9
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000176 1759 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1837 (1924)
Q Consensus 1759 ~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~A 1837 (1924)
..+.++.++|++..+..++..|.+.+.-..|.++|--. ++++|..-++-+.+..|.... . +++|...=..|+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~--~----a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP--G----ASQLRHLVKAAQA 80 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH--H----HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH--H----HHHHHHHHHHHHH
Confidence 45678888999999999998888999888888888777 999999999999888887631 1 1122111122333
Q ss_pred HHHHHHH--HHhCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHh
Q 000176 1838 RSMFEGI--LSEYPKRTDLWSIYLDQ---EIRLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1838 r~lfe~a--L~~~Pk~~dlw~~y~~l---e~k~gd~~~ar~lferal~ 1880 (1924)
|.-+=.. .-..+....-|...+.- ....|+.++|..+-++|..
T Consensus 81 R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 81 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 3221111 00112233446554332 2346888888888888876
No 361
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=57.58 E-value=13 Score=34.16 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=45.6
Q ss_pred EEEEEEEEeecceEE-EEEecCceeEEeeccccCcc-cccCcccccCCCcEEEEEEEEEecCCCeeEEec
Q 000176 1460 IVIGQIKRVESYGLF-ITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1527 (1924)
Q Consensus 1460 ~v~G~V~~v~~~GvF-V~l~~~~v~gl~h~sels~~-~~~~~~~~~~~Gd~Vk~~Vl~id~e~~ri~lsl 1527 (1924)
.+.|.|....+.|.| |.+++ +..=+||++---.. ++ ..-+||.|.+.+...|.+++||..-.
T Consensus 15 e~~G~Vik~l~n~~f~V~l~n-G~~~~c~i~GK~Rk~~I-----~Il~GD~V~ve~~~yd~~kgrIi~R~ 78 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELEN-GHKVLAHISGKMRQHYI-----RILPEDRVVVELSPYDLSRGRIVYRY 78 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETT-SCEEEEEECHHHHHTTC-----CCCTTCEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEEcCCCEEEEEeCC-CCEEEEEeCcceecCCc-----cCCCCCEEEEEECccCCCcEEEEEEc
Confidence 478999999877665 77765 66778998743222 21 25799999999888888888887643
No 362
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=52.78 E-value=51 Score=31.03 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=40.9
Q ss_pred CCCCEEEEEEEEEeeceE-EEEeCCC-cEEEEECccCCCcccCCCCccCCCCcEEEEEEEE
Q 000176 1366 SPNMIVQGYVKNVTSKGC-FIMLSRK-LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~-fV~l~~~-v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~ 1424 (1924)
.......|+|+... +|. ||.-..+ -+.|+|++.|... ...+..||.|...+..
T Consensus 14 s~~~~~~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~ 68 (89)
T 1wfq_A 14 SAALRETGVIEKLL-TSYGFIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSS 68 (89)
T ss_dssp SCCCEEEEEEEEEC-SSEEEEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEE
T ss_pred CcccccceEEEEEe-CCeeEEecCCCCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEE
Confidence 44568899999986 655 7777655 8999999998864 2356799999998765
No 363
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=52.30 E-value=23 Score=32.76 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=42.3
Q ss_pred ccCCCcEEEEEEEEEEcceEEEEEc--CCeEEEeeCcc-cCCCCCCCCCCCCCCCCEEEEEEEEEcCC
Q 000176 582 EATDRLITHGWITKIEKHGCFVRFY--NGVQGFAPRSE-LGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646 (1924)
Q Consensus 582 ~~~~G~~~~G~V~~i~~~G~~V~f~--~~v~g~lp~se-l~~~~~~~~~~~~~vGq~v~~rVl~vd~~ 646 (1924)
++.+|+++.|.|. +.++-++|.+. .|.+|++--.- +-.+...+.++.+ +|.+++++|+.+|.-
T Consensus 29 ~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~l 94 (102)
T 1jjg_A 29 DLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADGL 94 (102)
T ss_dssp CCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECSS
T ss_pred ccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEeccE
Confidence 5678999999875 56666778775 37888875432 2222222222332 899999999999853
No 364
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=50.40 E-value=50 Score=29.92 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=35.7
Q ss_pred EEEEEEEeec-ceE-EEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEE
Q 000176 1461 VIGQIKRVES-YGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515 (1924)
Q Consensus 1461 v~G~V~~v~~-~Gv-FV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~ 1515 (1924)
..|+|+...+ .|. ||.-++.+-. ++|+|.|.... .+.+||+|...+..
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD------LIKKDAAVTFEPTT 52 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG------GCCTTCEEEEEEEE
T ss_pred cceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC------CCCCCCEEEEEEEe
Confidence 5799998853 344 6776654566 99999987642 57999999998764
No 365
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=49.33 E-value=60 Score=32.88 Aligned_cols=49 Identities=27% Similarity=0.426 Sum_probs=30.7
Q ss_pred cEEEEEEeeeeceeE----EEEec-CCcceeeccCCCCCCCCCCccCCCcEEEEEEE
Q 000176 234 MVLTAYVKSIEDHGY----ILHFG-LPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285 (1924)
Q Consensus 234 ~~l~~~V~svedhG~----ild~G-i~~~~gFl~~~~~~~~~~~~l~~G~~~~~~v~ 285 (1924)
..+.|.|.+++..|. .++++ -..+...++...+. . ..+.+|+.+.+.+.
T Consensus 82 N~l~g~V~~i~~~G~~~~v~v~~~~g~~l~a~it~~~~~-~--l~l~~G~~V~~~~k 135 (145)
T 1h9m_A 82 NILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVA-E--LGLKPGASASAVIK 135 (145)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHH-H--TTCCTTCEEEEEEC
T ss_pred EEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEEcHHHHh-h--cCCCCCCEEEEEEc
Confidence 469999999998884 45552 12244555543221 1 15788888887763
No 366
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=47.90 E-value=26 Score=29.75 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=31.2
Q ss_pred CCcEEEEEEEEEEcc--eEEEEEcCCeEEEeeCcccC
Q 000176 585 DRLITHGWITKIEKH--GCFVRFYNGVQGFAPRSELG 619 (1924)
Q Consensus 585 ~G~~~~G~V~~i~~~--G~~V~f~~~v~g~lp~sel~ 619 (1924)
.|..+.|+|.+|... -|+|+|+.+..-++...+|.
T Consensus 16 DG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~ 52 (58)
T 4hcz_A 16 DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 52 (58)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEE
T ss_pred CCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHcc
Confidence 499999999999877 49999999999999988874
No 367
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=47.64 E-value=58 Score=30.64 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=42.3
Q ss_pred cCCCcEEEEEEEEeecceE-EEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEEE
Q 000176 1455 LHVGDIVIGQIKRVESYGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1516 (1924)
Q Consensus 1455 l~~G~~v~G~V~~v~~~Gv-FV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~i 1516 (1924)
..-.....|+|+... .|. ||.-++.+-+-|+|+|.|... ...+.+||+|...+..-
T Consensus 13 ~s~~~~~~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~~ 69 (89)
T 1wfq_A 13 TSAALRETGVIEKLL-TSYGFIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSSD 69 (89)
T ss_dssp SSCCCEEEEEEEEEC-SSEEEEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEEC
T ss_pred CCcccccceEEEEEe-CCeeEEecCCCCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEEC
Confidence 344467899999985 565 887766458999999998764 24578999999987654
No 368
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=45.95 E-value=38 Score=31.81 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=39.9
Q ss_pred CCCCEEEEEEEEEeeceE-EEEeCC-CcEEEEECccCCCcccCCCCccCCCCcEEEEEEE
Q 000176 1366 SPNMIVQGYVKNVTSKGC-FIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423 (1924)
Q Consensus 1366 k~G~~v~G~V~~v~~~G~-fV~l~~-~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl 1423 (1924)
..++...|+|+... +|. |+.-.. +-+-|+|++.+...+ ..+..||.|...+.
T Consensus 14 ~~~~~~~G~Vk~f~-kGfGFI~~ddgg~DvFvH~S~i~~~~-----~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 14 SNSKRLLGYVATLK-DNFGFIETANHDKEIFFHYSEFSGDV-----DSLELGDMVEYSLS 67 (88)
T ss_dssp SSCCCEEEEEEEEC-SSEEEEECSSSSCEEEEETTTCCSCT-----TTCCTTCEEEECCC
T ss_pred CCCCceeEEEEEEE-CCccEEecCCCCceEEEEEhhhcccc-----CcCCCCCEEEEEEE
Confidence 35788999999997 454 777655 589999999998652 35679999988653
No 369
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=45.86 E-value=6.8e+02 Score=33.80 Aligned_cols=178 Identities=11% Similarity=0.099 Sum_probs=94.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCcchhhHH--------HHHHHHHHHHHHc-CC-----CCHHHHHHHHHHHHhcCCCH
Q 000176 1684 FMLSMADVEKARSIAERALQTINIREENEKL--------NIWVAYFNLENEY-GN-----PPEEAVVKVFQRALQYCDPK 1749 (1924)
Q Consensus 1684 ~~~~~~e~dkAr~v~eraL~~i~~~ee~ekl--------~lWiayl~le~~~-g~-----~~~e~a~~vferAl~~~~~~ 1749 (1924)
.|+.+|++++|...+-.|=..++..+..|-. .-|+.+-.-...- +. .-.++...+++|.+.++=..
T Consensus 79 vyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl~h 158 (963)
T 4ady_A 79 VYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCLKA 158 (963)
T ss_dssp HHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHHHH
T ss_pred HheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHhC
Confidence 3566799999998887776666554432221 2233322211110 00 01356666677666655444
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CHHHH-HHHHHHHHHhCCCCChHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQEGV-QAVVQRALLSLPRHKHIKFISQ 1823 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-----~~~~A-~~l~~ral~~~p~~~~~~~~~~ 1823 (1924)
+.+...+.+.....+.+...++..+..+ .+...-+.+.+.|++.. ..+.- .++|+-++..+....+ .-|..
T Consensus 159 nae~~AvdLalE~erLD~Le~~vd~~~~--~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~-~dy~~ 235 (963)
T 4ady_A 159 SELKLALGIALEGYRLDIIESALKSKLD--QDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPN-CDYLT 235 (963)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHHHHHCC--C-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSS-CCHHH
T ss_pred CCHHHHHHHHHHHhhHHHHHHHHHhhcc--ccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCc-hhHHH
Confidence 5566666666666666655555443221 11223444444444433 33332 2445544443322110 23666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000176 1824 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1866 (1924)
Q Consensus 1824 ~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~le~k~g 1866 (1924)
..++..+.++.+.+..+|++++. .++..+-.+.+-.+.+.+
T Consensus 236 a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~ 276 (963)
T 4ady_A 236 LNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSA 276 (963)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhccc
Confidence 77788889999999999999884 344444444444444443
No 370
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=43.37 E-value=75 Score=27.93 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=36.8
Q ss_pred EEEEEEEEee-ceE-EEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEE
Q 000176 1371 VQGYVKNVTS-KGC-FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424 (1924)
Q Consensus 1371 v~G~V~~v~~-~G~-fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~ 1424 (1924)
..|+|+...+ +|. |+.-..+-+.|+|++.+...-. ..+..||.|...+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 53 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGF----KTLEEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSSC----CCCCTTCEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCCccEEEEHHHccccCC----CCCCCCCEEEEEEEE
Confidence 3689998863 444 7777667899999999985422 245699999988754
No 371
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=43.09 E-value=4.6e+02 Score=30.55 Aligned_cols=25 Identities=12% Similarity=-0.099 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 000176 1851 RTDLWSIYLDQEIRLGDVDLIRGLF 1875 (1924)
Q Consensus 1851 ~~dlw~~y~~le~k~gd~~~ar~lf 1875 (1924)
+.+++..++..+.+.+++..|+..|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3455666666666666666666555
No 372
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=42.31 E-value=38 Score=31.81 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=40.3
Q ss_pred CCCcEEEEEEEEeecceE-EEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEE
Q 000176 1456 HVGDIVIGQIKRVESYGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514 (1924)
Q Consensus 1456 ~~G~~v~G~V~~v~~~Gv-FV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl 1514 (1924)
..+....|+|+... .|. ||.-++.+-+-++|+|.|... -..+.+||.|...+.
T Consensus 14 ~~~~~~~G~Vk~f~-kGfGFI~~ddgg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 14 SNSKRLLGYVATLK-DNFGFIETANHDKEIFFHYSEFSGD-----VDSLELGDMVEYSLS 67 (88)
T ss_dssp SSCCCEEEEEEEEC-SSEEEEECSSSSCEEEEETTTCCSC-----TTTCCTTCEEEECCC
T ss_pred CCCCceeEEEEEEE-CCccEEecCCCCceEEEEEhhhccc-----cCcCCCCCEEEEEEE
Confidence 35677899999997 454 777665468899999999764 145789999998653
No 373
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=42.28 E-value=2.8e+02 Score=30.21 Aligned_cols=92 Identities=24% Similarity=0.364 Sum_probs=60.8
Q ss_pred CCeEEEEEEEEecC--c--eEEEeCCCeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEEeCCeEEEEEccccccchh
Q 000176 499 GMVVKGKVIAVDSF--G--AIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL 574 (1924)
Q Consensus 499 G~~v~g~V~~v~~~--G--~~V~l~~~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v~~~~l~lT~K~~Lv~~~~ 574 (1924)
+.-+.|+|++|.+. | +-|++.++-.-+++..|++- ...-+...+.+|..|-|+-- +..+
T Consensus 22 ~~W~rg~v~~I~~~~~g~~YkVkF~~~g~~ivs~~hiA~-~~~p~~~~l~vG~RVVA~~~--~~~~-------------- 84 (213)
T 3dlm_A 22 KTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAY-DYHPPADKLYVGSRVVAKYK--DGNQ-------------- 84 (213)
T ss_dssp SBEEEEEEEEEEEETTEEEEEEEESSSCEEEECGGGEEE-SSCCCGGGCCTTCEEEEEEE--CSSC--------------
T ss_pred CcEEEEEEEEEEECCCCeEEEEEEcCCCCEEeecceEEE-ecCCCccEEeEEEEEEEEec--CCCC--------------
Confidence 66678999998763 4 67788866667899999975 21222347889987766331 1111
Q ss_pred hHhhhhcccCCCcEEEEEEEEEE----cceEEEEEcCCeEEEeeCccc
Q 000176 575 AILSSYAEATDRLITHGWITKIE----KHGCFVRFYNGVQGFAPRSEL 618 (1924)
Q Consensus 575 ~~~~~~~~~~~G~~~~G~V~~i~----~~G~~V~f~~~v~g~lp~sel 618 (1924)
-..+.|.|...- .+=+.|=|.+|...++|..++
T Consensus 85 -----------~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~Yv~~~~V 121 (213)
T 3dlm_A 85 -----------VWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSEL 121 (213)
T ss_dssp -----------EEEEEEEEEECCCTTTTSCEEEEETTSCEEEECGGGE
T ss_pred -----------cceeeeEEEECCccCCCceEEEEEeCCCcceecCceE
Confidence 123566665442 345677778999999999885
No 374
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=41.02 E-value=2.1e+02 Score=31.73 Aligned_cols=139 Identities=11% Similarity=0.062 Sum_probs=84.5
Q ss_pred cccCCCEEEEEEEEEeecCCeEEEEeecc---ccc-----------ccccccccCCCCCe-----------EEEEEEEEe
Q 000176 456 KYKEGSCVRVRILGFRHLEGLATGILKAS---AFE-----------GLVFTHSDVKPGMV-----------VKGKVIAVD 510 (1924)
Q Consensus 456 ~~~vG~~~~~rV~~~~~~d~~~~~s~k~~---~~~-----------~~~~~~~~l~~G~~-----------v~g~V~~v~ 510 (1924)
.+.+|+.+.+.|..+......+.--.... .++ ........+++|++ ..|+|+++.
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~WyRa~V~~~~ 91 (226)
T 4b9x_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEIL 91 (226)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC--CCCCTTCEEEEEETTTTEEEEEEEEEEC
T ss_pred EcCCCCEEEEEEEEEeCCCEEEEEEcCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEEC
Confidence 38899999999999887766554322211 111 01112234556765 456788876
Q ss_pred cCc-eEEEeCC-CeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEEeCCeEEEEEccccccchhhHhhhhcccCCCcE
Q 000176 511 SFG-AIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588 (1924)
Q Consensus 511 ~~G-~~V~l~~-~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v~~~~l~lT~K~~Lv~~~~~~~~~~~~~~~G~~ 588 (1924)
+.| +.|.+-+ |-...||..+|-. ..++-.--+.+-++|+.-.+... -..-.......|.++..|..
T Consensus 92 ~~~~~~V~~vDyGn~~~v~~~~l~~---l~~~f~~lP~qA~~c~L~~v~p~---------~~~w~~ea~~~f~~l~~~k~ 159 (226)
T 4b9x_A 92 PSGNVKVHFVDYGNVEEVTTDQLQA---ILPQFLLLPFQGMQCWLVDIQPP---------NKHWTKEATARFQACVVGLK 159 (226)
T ss_dssp SSSEEEEECTTTCCEEEEEGGGEEC---CCGGGSSSCBCCEEEEESSEECS---------SSSCCHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEEEecCCEEEEEHHHhcc---ChHHHcccccceEEEEEecEECC---------CCCCCHHHHHHHHHHHCCCe
Confidence 665 5666654 5677888666543 22221223778899977555210 00111123444666667999
Q ss_pred EEEEEEEEEcceEEEEEc
Q 000176 589 THGWITKIEKHGCFVRFY 606 (1924)
Q Consensus 589 ~~G~V~~i~~~G~~V~f~ 606 (1924)
+.+.|..+.+.++.|+++
T Consensus 160 l~~~V~~~~~~~~~V~L~ 177 (226)
T 4b9x_A 160 LQARVVEITANGVGVELT 177 (226)
T ss_dssp EEEEEEEECSSCEEEEEE
T ss_pred EEEEEEEEeCCeEEEEEE
Confidence 999999999999999886
No 375
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=37.23 E-value=76 Score=28.57 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=36.7
Q ss_pred EEEEEEEEee-ceE-EEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEE
Q 000176 1371 VQGYVKNVTS-KGC-FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424 (1924)
Q Consensus 1371 v~G~V~~v~~-~G~-fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~ 1424 (1924)
..|+|+..+. +|. ||.-..+-+.|+|++.+...-. ..+..||.|...+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 53 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGF----RTLNEGDIVTFDVEP 53 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSSC----SSCCTTCEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEecCCCCcEEEEhhhccccCC----CCCCCCCEEEEEEEE
Confidence 3689998863 454 7777667899999999985422 346699999988754
No 376
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=36.82 E-value=3.3e+02 Score=29.36 Aligned_cols=139 Identities=11% Similarity=0.062 Sum_probs=84.7
Q ss_pred cccCCCEEEEEEEEEeecCCeEEEEeecc---ccc-----------ccccccccCCCCCe-----------EEEEEEEEe
Q 000176 456 KYKEGSCVRVRILGFRHLEGLATGILKAS---AFE-----------GLVFTHSDVKPGMV-----------VKGKVIAVD 510 (1924)
Q Consensus 456 ~~~vG~~~~~rV~~~~~~d~~~~~s~k~~---~~~-----------~~~~~~~~l~~G~~-----------v~g~V~~v~ 510 (1924)
.+.+|+.+.+.|..+......+.--.... .++ ........+++|++ ..|+|+++.
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~wyRa~V~~~~ 91 (201)
T 4b9w_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEIL 91 (201)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHHHSSSCCCCCCCTTCEEEEEETTTTEEEEEEEEEEC
T ss_pred EcCCCCEEEEEEEEEeCCCEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEEC
Confidence 38899999999999987766554322211 111 11112234556665 467788887
Q ss_pred cCc-eEEEeCC-CeEEeecCCCcccccccCCCCCCCCCCEEEEEEEEEeCCeEEEEEccccccchhhHhhhhcccCCCcE
Q 000176 511 SFG-AIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLI 588 (1924)
Q Consensus 511 ~~G-~~V~l~~-~v~g~vp~~hlsd~~~~~p~~~f~vG~~vk~rVl~v~~~~l~lT~K~~Lv~~~~~~~~~~~~~~~G~~ 588 (1924)
+.+ +.|.+-+ |-...||..++-. ..++-.--+.+-++|+.-.+... -..-.......|.++..|..
T Consensus 92 ~~~~~~V~~vDyG~~~~v~~~~l~~---l~~~f~~lP~qA~~c~L~~v~p~---------~~~w~~ea~~~f~~l~~~k~ 159 (201)
T 4b9w_A 92 PSGNVKVHFVDYGNVEEVTTDQLQA---ILPQFLLLPFQGMQCWLVDIQPP---------NKHWTKEATARFQACVVGLK 159 (201)
T ss_dssp TTSCEEEEETTTCCEEEECGGGEEE---CCGGGGSSCBCCEEEEESSEECS---------SSSCCHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEEEccCCEEEEEHHHhcc---ChHhHcccchhhEEEEEcCEEcC---------CCCCCHHHHHHHHHHHCCCE
Confidence 665 6676655 5677888766543 22221123678889977555210 00111123344666667889
Q ss_pred EEEEEEEEEcceEEEEEc
Q 000176 589 THGWITKIEKHGCFVRFY 606 (1924)
Q Consensus 589 ~~G~V~~i~~~G~~V~f~ 606 (1924)
+.+.|..+.+.++.|.++
T Consensus 160 l~~~V~~~~~~~~~V~L~ 177 (201)
T 4b9w_A 160 LQARVVEITANGVGVELT 177 (201)
T ss_dssp EEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEeCCEEEEEEE
Confidence 999999999999988886
No 377
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=36.39 E-value=46 Score=31.85 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=39.6
Q ss_pred CCCEEEEEEEEEeeceE-EEEeCCC-cEEEEECccCCCcccCCCCccCCCCcEEEEEEE
Q 000176 1367 PNMIVQGYVKNVTSKGC-FIMLSRK-LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423 (1924)
Q Consensus 1367 ~G~~v~G~V~~v~~~G~-fV~l~~~-v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl 1423 (1924)
......|+|+.. .+|. ||.-..+ -+.|+|++.+... ...+..||.|...+.
T Consensus 15 ~~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 15 KQARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred CCcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 356789999988 6665 7776554 8999999999865 235679999999874
No 378
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=36.20 E-value=1.1e+02 Score=27.04 Aligned_cols=51 Identities=14% Similarity=0.308 Sum_probs=42.1
Q ss_pred CCCCCCCCCCEEEEEEEEEeCCeEEEEEccccccchhhHhhhhcccCCCcEEEEEEEEEEcceEEEEEcCCeEEEeeCcc
Q 000176 538 KPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617 (1924)
Q Consensus 538 ~p~~~f~vG~~vk~rVl~v~~~~l~lT~K~~Lv~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~~V~f~~~v~g~lp~se 617 (1924)
.|...|.+|+-|-||- ..|..+.|+|+.....-|+|+|..+-+-++...+
T Consensus 11 ~pa~~~~~geDVL~rw------------------------------~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kd 60 (69)
T 2xk0_A 11 SPAVTYALQEDVFIKC------------------------------NDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDK 60 (69)
T ss_dssp CCCCCCCTTCEEEEEC------------------------------TTSCEEEEEEEEECSSCEEEEETTCCEEEECTTT
T ss_pred CcccccccCCeEEEEe------------------------------cCCCEEEEEEEecCCceEEEEecCCcceeeeHHH
Confidence 4567899999887741 2499999999988888999999998888888777
Q ss_pred c
Q 000176 618 L 618 (1924)
Q Consensus 618 l 618 (1924)
|
T Consensus 61 i 61 (69)
T 2xk0_A 61 L 61 (69)
T ss_dssp E
T ss_pred H
Confidence 6
No 379
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=35.33 E-value=39 Score=32.36 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=39.7
Q ss_pred CCcEEEEEEEEeecceE-EEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEE
Q 000176 1457 VGDIVIGQIKRVESYGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514 (1924)
Q Consensus 1457 ~G~~v~G~V~~v~~~Gv-FV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl 1514 (1924)
......|+|+.. ..|. ||.-++.+-+-++|+|.|... ...+.+||.|...+.
T Consensus 15 ~~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 15 KQARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred CCcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 356689999988 6555 777665457889999999764 245789999998873
No 380
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=34.94 E-value=72 Score=28.84 Aligned_cols=48 Identities=10% Similarity=0.020 Sum_probs=35.6
Q ss_pred EEEEEEEEEE---cceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEE
Q 000176 588 ITHGWITKIE---KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1924)
Q Consensus 588 ~~~G~V~~i~---~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~ 642 (1924)
...|+|+... .||.+-.-.++-. |+|.|.+.-. . .+.+||.|.+.+..
T Consensus 2 ~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~-----g-~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANP-----D-LIKKDAAVTFEPTT 52 (74)
T ss_dssp CEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSG-----G-GCCTTCEEEEEEEE
T ss_pred CcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccC-----C-CCCCCCEEEEEEEe
Confidence 3579998886 3566655445566 9999999632 1 68899999999874
No 381
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=33.30 E-value=1.2e+02 Score=26.77 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=0.0
Q ss_pred EEEEEEeec-ceE-EEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEEE
Q 000176 1462 IGQIKRVES-YGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1515 (1924)
Q Consensus 1462 ~G~V~~v~~-~Gv-FV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl~ 1515 (1924)
.|+|+...+ .|. ||.-++++-+-++|+|.|...-...+ .+||.|...+..
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~l----~~G~~V~f~~~~ 54 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTL----KEGQRVSFDVTT 54 (67)
T ss_dssp EEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGGSSC----CTTCEEEEEEEE
T ss_pred CEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCCCCC----CCCCEEEEEEEE
No 382
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.77 E-value=3.8e+02 Score=37.33 Aligned_cols=121 Identities=10% Similarity=-0.072 Sum_probs=83.4
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCC------------------
Q 000176 1754 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR------------------ 1814 (1924)
Q Consensus 1754 ~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~------------------ 1814 (1924)
.++..+...+.++.|.++ +.-.+.++-.-+..|..++.. ++++|.++|++|-.....
T Consensus 817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444556666777666553 233355555556777778888 999999999887432211
Q ss_pred ---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000176 1815 ---HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-----TDLWSIYLDQEIRLGDVDLIRGLFERA 1878 (1924)
Q Consensus 1815 ---~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~-----~dlw~~y~~le~k~gd~~~ar~lfera 1878 (1924)
......|...+.++.+.+.++.+...-..|+...+.. ..+|..........|+++.|-..+-+.
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 1113456677778888999999999999999876542 237999999999999999886666443
No 383
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=32.22 E-value=3.3e+02 Score=28.70 Aligned_cols=75 Identities=11% Similarity=0.264 Sum_probs=50.6
Q ss_pred cccccccCccEEEEEEEEEecceeEEEeccCCceeEEEeeeecCC-cccccCCeEEEEEEEeeccccEEEEeechhhhhh
Q 000176 867 KWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG-ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945 (1924)
Q Consensus 867 ~~~~~~~vG~~v~g~V~~i~~~g~~v~l~~~~~v~g~i~~~~l~~-~~~~~G~~v~~~Vl~vd~~~~~v~ls~k~~l~~~ 945 (1924)
+.+...++|+..+.+|---..||-. +++..-.++..++.+ ..+++|+.+..
T Consensus 70 eaL~gm~~Ge~~~v~Ipp~~AYG~~-----~~~lv~~vp~~~f~~~~~~~~G~~~~~----------------------- 121 (169)
T 4dt4_A 70 QHLLGLKVGDKTTFSLEPDAAFGVP-----SPDLIQYFSRREFMDAGEPEIGAIMLF----------------------- 121 (169)
T ss_dssp HHHTTCCTTCEEEEEECGGGTTCCC-----CGGGEEEEEGGGGTTTCCCCTTCEEEE-----------------------
T ss_pred HHHcCCCCCCEEEEEEChHHhcCCC-----ChHHEEEeCHHHCCCcCCCCCCcEEEE-----------------------
Confidence 3367788999888887655556532 223445566666653 35666665542
Q ss_pred hhhcchhhHHhHhhhhhccccccCCCcEEEEEEEEEeeeEEEEEe
Q 000176 946 FREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 990 (1924)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~v~vsl 990 (1924)
.-..|+.+.|+|..|.++.|.|++
T Consensus 122 ---------------------~~~~G~~~~~~V~~v~~~~V~vD~ 145 (169)
T 4dt4_A 122 ---------------------TAMDGSEMPGVIREINGDSITVDF 145 (169)
T ss_dssp ---------------------ECTTSCEEEEEEEEEETTEEEEEC
T ss_pred ---------------------ECCCCCEEEEEEEEEcCCEEEEeC
Confidence 012477889999999999999998
No 384
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=29.97 E-value=2.3e+02 Score=25.83 Aligned_cols=59 Identities=20% Similarity=0.099 Sum_probs=40.5
Q ss_pred CCEEEEEEEEEecCcCeEEEEeCC-ceEEEEecccccccccCCCCCCCCCCCEEEEEEEE
Q 000176 1260 GDIVGGRISKILSGVGGLVVQIGP-HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318 (1924)
Q Consensus 1260 G~~v~g~V~~v~~~~~g~~V~l~~-~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~ 1318 (1924)
.....|+|...+...+.=|+.-.. +.+-++|++.+...-...-...+..|+.|.+.+..
T Consensus 6 ~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE
T ss_pred ccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE
Confidence 345689999998654445665544 68999999999643111123456799999998755
No 385
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=29.82 E-value=1.7e+02 Score=26.67 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=39.1
Q ss_pred cEEEEEEEEEE---cceEEEEEcCCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEE
Q 000176 587 LITHGWITKIE---KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1924)
Q Consensus 587 ~~~~G~V~~i~---~~G~~V~f~~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~ 642 (1924)
....|+|+... .||.+..-.++-.-|+|.|.+.......--..+..||.|.+.+..
T Consensus 7 ~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE
T ss_pred cccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE
Confidence 45689999986 356666555578999999999532000012458899999998875
No 386
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=29.79 E-value=3.5e+02 Score=26.87 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=30.4
Q ss_pred cEEEEEEEEEeee----EEEEEecCCcceEEEEeeecCCCCCCCcccccCCCeEEEEEec
Q 000176 972 QTVNAIVEIVKEN----YLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 1027 (1924)
Q Consensus 972 ~~v~g~V~~i~~~----~v~vsl~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~~~V~~ 1027 (1924)
..+.|+|..+... .+.|.+.++..+...++...+. ...+.+|+.|.+.+..
T Consensus 82 N~l~g~V~~i~~~G~~~~v~v~~~~g~~l~a~it~~~~~-----~l~l~~G~~V~~~~k~ 136 (145)
T 1h9m_A 82 NILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVA-----ELGLKPGASASAVIKA 136 (145)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHH-----HTTCCTTCEEEEEECG
T ss_pred EEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEEcHHHHh-----hcCCCCCCEEEEEEcc
Confidence 4689999999643 3455554333444444432221 1247789999987654
No 387
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=28.74 E-value=65 Score=28.31 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=18.7
Q ss_pred CCCCCCCCCCEEEEE----------EEEEcCCCCEEEEEE
Q 000176 625 EPSSMYHVGQVVKCR----------IMSSIPASRRINLSF 654 (1924)
Q Consensus 625 ~~~~~~~vGq~v~~r----------Vl~vd~~~~ri~lS~ 654 (1924)
.+...|++||-|.|+ |.+||..++++.+-+
T Consensus 9 ~~~~~f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F 48 (66)
T 2eqj_A 9 KPACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIF 48 (66)
T ss_dssp CCCCCSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred cccccccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEE
Confidence 344569999998876 555555445555544
No 388
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=27.62 E-value=2.5e+02 Score=39.23 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=26.3
Q ss_pred CCchHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000176 1657 APRTPDEFERLVRSSPNSSFVWIKYMAFMLS 1687 (1924)
Q Consensus 1657 ~p~a~~~ferll~~~P~s~~~W~~y~~~~~~ 1687 (1924)
.+++.+.|+.++..+|++..+....++.+.+
T Consensus 1123 ~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~ 1153 (1354)
T 3lxu_X 1123 LEMAEKIYNDVVAAHPKHLQANLLLIQNIES 1153 (1354)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCccHHHHHHHHHhhhh
Confidence 4557789999999999999999998887653
No 389
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.59 E-value=2e+02 Score=28.45 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=8.8
Q ss_pred cCCHHHHHHHHHHHHh
Q 000176 1865 LGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1865 ~gd~~~ar~lferal~ 1880 (1924)
.|+++.|..+|..|+.
T Consensus 31 ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 31 AGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3555555555555554
No 390
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=27.55 E-value=98 Score=27.99 Aligned_cols=47 Identities=19% Similarity=0.039 Sum_probs=0.0
Q ss_pred EEEEEEEee-ceE-EEEeCCCcEEEEECccCC-CcccCCCCccCCCCcEEEEEE
Q 000176 1372 QGYVKNVTS-KGC-FIMLSRKLDAKVLLSNLS-DGYVESPEKEFPIGKLVAGRV 1422 (1924)
Q Consensus 1372 ~G~V~~v~~-~G~-fV~l~~~v~g~v~~sels-d~~~~~~~~~f~~G~~V~~kV 1422 (1924)
+|+|+..+. +|. |+.-..+-+-|+|++.+. ..-...+. .||.|...+
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~----~G~~V~F~~ 51 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDEGKLV----KGSMVHFDP 51 (74)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGGGTTCC----TTSEEEEEE
T ss_pred CEEEEEEECCCCEEEEecCCCceEEEEhhhcccCCCCCCCC----CCCEEEEEE
No 391
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=27.31 E-value=2.7e+02 Score=24.80 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=38.2
Q ss_pred EEEEEEEEEecCcCeEEEEeCC-ceEEEEecccccccccCCCCCCCCCCCEEEEEEEEE
Q 000176 1262 IVGGRISKILSGVGGLVVQIGP-HLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLEI 1319 (1924)
Q Consensus 1262 ~v~g~V~~v~~~~~g~~V~l~~-~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~v 1319 (1924)
...|+|...++..+.=|+.-.. +-+-++|++.+... ....+..|+.|.+.+..-
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~ 59 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTN----GFKTLAEGQRVEFEITNG 59 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCS----SCCCCCTTCEEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccc----cCcCCCCCCEEEEEEEEC
Confidence 4679999887654344565544 48899999999532 234567999999987653
No 392
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=27.28 E-value=1.6e+02 Score=26.17 Aligned_cols=51 Identities=25% Similarity=0.247 Sum_probs=36.5
Q ss_pred EEEEEEEEEee-ceE-EEEeCCC-cEEEEECccCCCcccCCCCccCCCCcEEEEEEEE
Q 000176 1370 IVQGYVKNVTS-KGC-FIMLSRK-LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424 (1924)
Q Consensus 1370 ~v~G~V~~v~~-~G~-fV~l~~~-v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~ 1424 (1924)
...|+|+..++ +|. |+.-..+ -+.|+|++.+...- ...+..||.|...+..
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~ 58 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITN 58 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSS----CCCCCTTCEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHccccc----CcCCCCCCEEEEEEEE
Confidence 46899998864 343 6665544 79999999998532 2346699999998765
No 393
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=27.28 E-value=1.5e+02 Score=27.40 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=17.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000176 1864 RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1899 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~~~~~pk~~k~lw~~yl~~E 1899 (1924)
+.|+++.|..+|..++. +|..++.+|
T Consensus 31 ~~g~y~eAl~lY~~aie----------~l~~alk~e 56 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE----------VLAQLVSLY 56 (83)
T ss_dssp HTTCHHHHHHHHHHHHH----------HHHHHHHHS
T ss_pred HhccHHHHHHHHHHHHH----------HHHHHHHHC
Confidence 56777777777777775 555556555
No 394
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=27.09 E-value=72 Score=28.09 Aligned_cols=48 Identities=29% Similarity=0.249 Sum_probs=34.8
Q ss_pred EEEEEEEee-ceE-EEEeCCCcEEEEECccCCCcccCCCCccCCCCcEEEEEEE
Q 000176 1372 QGYVKNVTS-KGC-FIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVL 1423 (1924)
Q Consensus 1372 ~G~V~~v~~-~G~-fV~l~~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl 1423 (1924)
+|+|+.... +|. |+.-..+-+-|+|++.+...-. ..+..||.|...+.
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~ 51 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGF----KTLKEGQVVEFEIQ 51 (66)
T ss_dssp CEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSSC----CCCCSSSEEEEEEE
T ss_pred cEEEEEEECCCCEEEEecCCCceEEEEhHHccccCC----CCCCCCCEEEEEEE
Confidence 588888863 443 7777667899999999875321 34669999998764
No 395
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=26.99 E-value=2e+02 Score=26.74 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=44.7
Q ss_pred hccccccCCCcEEEEEEEEEeeeEEEEEecCCcceEEEEeeecCC--CCCC-CcccccCCCeEEEEEeccC
Q 000176 962 REASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN--TQKF-PQKQFLNGQSVIATVMALP 1029 (1924)
Q Consensus 962 ~~~~~~l~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~~--~~~~-~~~~f~~Gq~v~~~V~~~~ 1029 (1924)
..+..+|.+|++..|+|- +++.-+.|.|++..++.+++- ..+| ..+. ..++=-+|.+|.++|..++
T Consensus 24 ~~~~~~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~-dYvnv~~dr~~klkkkLVGKtIkVqVIRvD 92 (102)
T 1jjg_A 24 RTSAMDLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILL-DYLNYRQDTLDRLKERLVGRVIKTRVVRAD 92 (102)
T ss_dssp SSCCCCCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEEC-TTCCSSCCCCCHHHHHHTTCEEEEEEEEEC
T ss_pred eeeccccCCCceEeeEEE-EeCCEEEEEecCCCCceeeee-hhhhhhHHHHHHHHHHhcCceEEEEEEEec
Confidence 345568999999999974 556667788887668888763 2233 2121 1122238999999999875
No 396
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=26.03 E-value=1.4e+02 Score=37.44 Aligned_cols=71 Identities=11% Similarity=-0.065 Sum_probs=42.6
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000176 1788 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1860 (1924)
Q Consensus 1788 ~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk~~dlw~~y~~ 1860 (1924)
.+|+..... .++.|+..|.+|+...|..- ..+.++|.+....|+.-+|.-.|-|+|.........+..+..
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G--~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~ 228 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNG--QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBS--HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 444444444 66666666676666666664 566666666666666666666666666654445555555443
No 397
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.75 E-value=1.3e+02 Score=26.33 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=30.9
Q ss_pred CCcEEEEEEEEEEc--ceEEEEEcCCeEEEeeCcccC
Q 000176 585 DRLITHGWITKIEK--HGCFVRFYNGVQGFAPRSELG 619 (1924)
Q Consensus 585 ~G~~~~G~V~~i~~--~G~~V~f~~~v~g~lp~sel~ 619 (1924)
.|..+.|+|++|.. .-|+|.|+.+..-++...+|.
T Consensus 22 DGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~ 58 (68)
T 2e5p_A 22 DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 58 (68)
T ss_dssp TSSEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEE
T ss_pred CCcEEEeEEEEEecCCcEEEEEEccCCeeeeeeeccc
Confidence 49999999999985 349999999999999988884
No 398
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=24.98 E-value=3.2e+02 Score=25.07 Aligned_cols=17 Identities=0% Similarity=-0.021 Sum_probs=10.1
Q ss_pred HcCCHHHHHHHHHHHHh
Q 000176 1864 RLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~ 1880 (1924)
..|+++.|..+|..++.
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44666666666666554
No 399
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.95 E-value=1.7e+02 Score=26.89 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=11.1
Q ss_pred HcCCHHHHHHHHHHHHh
Q 000176 1864 RLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~ 1880 (1924)
+.|+++.|..+|..++.
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 55666666666666665
No 400
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=24.42 E-value=3.5e+02 Score=23.55 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=38.1
Q ss_pred EEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEE
Q 000176 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318 (1924)
Q Consensus 1264 ~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~ 1318 (1924)
.|+|...++..+.=|+.-..+.+-++|++.+... ....+..|+.|.+.+..
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~ 53 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGE----GFKTLEEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSS----SCCCCCTTCEEEEEEEE
T ss_pred ceEEEEEECCCCeEEEecCCCccEEEEHHHcccc----CCCCCCCCCEEEEEEEE
Confidence 6899988865545577766668999999999542 12456799999998755
No 401
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=23.41 E-value=3.2e+02 Score=25.46 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=36.5
Q ss_pred EEEEEEEEEeCCCCEEEEEeecccccccch-------hccccccccCCCcEEEEEEEEee
Q 000176 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQ-------SEINNLSNLHVGDIVIGQIKRVE 1469 (1924)
Q Consensus 1417 ~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~-------~~~~~~~~l~~G~~v~G~V~~v~ 1469 (1924)
.+.+.|.+||++.++|.|+--+...-.|+. .....+..+++||.|+=.+.+..
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~ 76 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG 76 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEEEEEeC
Confidence 588999999999999888765533211111 11123788999999998776553
No 402
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=23.19 E-value=3.4e+02 Score=24.75 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=36.5
Q ss_pred EEEEEEEEEeCCCCEEEEEeecccccccch-------hccccccccCCCcEEEEEEEEee
Q 000176 1417 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQ-------SEINNLSNLHVGDIVIGQIKRVE 1469 (1924)
Q Consensus 1417 ~V~~kVl~vd~e~~ri~LSlk~~~~~~~~~-------~~~~~~~~l~~G~~v~G~V~~v~ 1469 (1924)
.+.+.|.+||++.+.|.|+.-+...-.|+. .....+..+++||.|+=.+.+..
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~ 68 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG 68 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEEEEEeC
Confidence 578999999999999888765533211111 11123778999999998776553
No 403
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=22.97 E-value=2.8e+02 Score=25.70 Aligned_cols=17 Identities=6% Similarity=-0.035 Sum_probs=8.7
Q ss_pred HcCCHHHHHHHHHHHHh
Q 000176 1864 RLGDVDLIRGLFERAIS 1880 (1924)
Q Consensus 1864 k~gd~~~ar~lferal~ 1880 (1924)
..|+++.|..+|..++.
T Consensus 28 ~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 28 SESRYPQALVCYQEGID 44 (86)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34555555555555553
No 404
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.28 E-value=3.5e+02 Score=33.81 Aligned_cols=77 Identities=5% Similarity=-0.118 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000176 1750 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1828 (1924)
Q Consensus 1750 ~i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~l~~~-~~~~A~~l~~ral~~~p~~~~~~~~~~~A~le 1828 (1924)
.....++++......+..|...|.+|....|.+...|..+|-..... +.-.|.-.|-|+|..... +..++..+..++
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P--f~~a~~nL~~~f 230 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP--FPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC--CHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC--ChhHHHHHHHHH
Confidence 35566778888888899999999999999999999999999988888 888899999999966432 345555555544
No 405
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=22.15 E-value=3.1e+02 Score=25.74 Aligned_cols=15 Identities=0% Similarity=-0.064 Sum_probs=7.0
Q ss_pred HcCCHHHHHHHHHHH
Q 000176 1830 KNGVADRGRSMFEGI 1844 (1924)
Q Consensus 1830 ~~g~~e~Ar~lfe~a 1844 (1924)
..|++++|..+|..+
T Consensus 27 ~~g~y~eAl~~Y~~A 41 (93)
T 1wfd_A 27 AESRYQQALVCYQEG 41 (93)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444444
No 406
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=21.65 E-value=2.6e+02 Score=28.80 Aligned_cols=50 Identities=8% Similarity=0.151 Sum_probs=35.3
Q ss_pred CCeEEEecCCccCcccc------cCcccCCCCCCEEEE----------EEEEeeCCCCeEEEeeccc
Q 000176 783 GRLTGFAPRSKAVDGQR------ADLSKTYYVGQSVRS----------NILDVNSETGRITLSLKQS 833 (1924)
Q Consensus 783 ~~l~Glv~~s~~s~~~~------~~~~~~f~~Gq~V~~----------~V~~id~~~~r~~lSlk~~ 833 (1924)
.|++||+.. -++++-+ ..+...|.+|+.|++ .|..+|.+++++.+.+...
T Consensus 64 ~gV~~fvg~-~v~~~Ei~~il~~~~~~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~ 129 (152)
T 3p8b_B 64 RHARGVLPG-EVPFKEIEHFLEEKPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDA 129 (152)
T ss_dssp TTEEEECSS-CBCGGGTGGGCCCSCTTTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSC
T ss_pred CCEEEeCCC-CCCHHHHHHHhCcCCccccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEec
Confidence 367788653 3333222 123456999999986 8999999999998887654
No 407
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=21.51 E-value=46 Score=28.85 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=32.1
Q ss_pred cEEEEEEeeeecee----EEEEecCCcceeeccCCCCCCCCCCccCCCcEEEEEEE
Q 000176 234 MVLTAYVKSIEDHG----YILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285 (1924)
Q Consensus 234 ~~l~~~V~svedhG----~ild~Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~v~ 285 (1924)
..+.|.|.+++..| +.+++|=..+.+.++...+. ...|.+|+.+.+.|.
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~s~~---~l~L~~G~~V~~~ik 59 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVA---DLDLVPGDKVTALVK 59 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHHH---HHTCCTTCEEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHHHHH---hCCCCCCCEEEEEEe
Confidence 36999999999988 44555411244445543321 126999999998874
No 408
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=21.41 E-value=44 Score=29.25 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=0.0
Q ss_pred EEEEEEeeeecee----EEEEec-CCcceeeccCCCCCCCCCCccCCCcEEEEEE
Q 000176 235 VLTAYVKSIEDHG----YILHFG-LPSFTGFLPRNNLAENSGIDVKPGLLLQGVV 284 (1924)
Q Consensus 235 ~l~~~V~svedhG----~ild~G-i~~~~gFl~~~~~~~~~~~~l~~G~~~~~~v 284 (1924)
.+.|.|.+++..| +.+++| -..+.+.++...+..- .|.+|+.+.+.|
T Consensus 8 ~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~~~l---~L~~G~~V~a~i 59 (68)
T 1gut_A 8 QLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEEL---GVKEGAELTAVV 59 (68)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHHH---TCCTTCEEEEEC
T ss_pred EEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHHHHC---CCCCCCEEEEEE
No 409
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=21.22 E-value=3e+02 Score=24.63 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=38.0
Q ss_pred EEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEE
Q 000176 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318 (1924)
Q Consensus 1264 ~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~ 1318 (1924)
+|+|...+...+.=|+.-..+.+-++|++.+... ....+.+|+.|.+.+..
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~ 53 (73)
T 3a0j_A 3 KGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAK----GFRTLNEGDIVTFDVEP 53 (73)
T ss_dssp EEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSS----SCSSCCTTCEEEEEEEC
T ss_pred CEEEEEEECCCCEEEEecCCCCcEEEEhhhcccc----CCCCCCCCCEEEEEEEE
Confidence 6899988876545577766678999999999542 12456799999988754
No 410
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=21.14 E-value=1.7e+02 Score=30.27 Aligned_cols=51 Identities=22% Similarity=0.125 Sum_probs=0.0
Q ss_pred EEEEEEEEEee-ceE-EEEeC--------CCcEEEEECccCCCcccCCCCccCCCCcEEEEEEEE
Q 000176 1370 IVQGYVKNVTS-KGC-FIMLS--------RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1424 (1924)
Q Consensus 1370 ~v~G~V~~v~~-~G~-fV~l~--------~~v~g~v~~selsd~~~~~~~~~f~~G~~V~~kVl~ 1424 (1924)
.+.|+|+-.+. +|. ||.-. .+-+.|||++.|.......+. .|+.|...|..
T Consensus 9 ~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~l~----eG~~V~f~~~~ 69 (148)
T 3ts2_A 9 HGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLK----EGEAVEFTFKK 69 (148)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCCCC----TTCEEEEEEEE
T ss_pred cceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCccCC----CCCEEEEEEEE
No 411
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=21.04 E-value=5.4e+02 Score=28.25 Aligned_cols=134 Identities=19% Similarity=0.158 Sum_probs=82.6
Q ss_pred CCCCCCEEEEEEEEE-eCCeEEEEEccc--c--ccchhhHhhh-hc-------ccC-----------CCcEEEEEEEEEE
Q 000176 542 KFKVGAELVFRVLGV-KSKRITVTHKKT--L--VKSKLAILSS-YA-------EAT-----------DRLITHGWITKIE 597 (1924)
Q Consensus 542 ~f~vG~~vk~rVl~v-~~~~l~lT~K~~--L--v~~~~~~~~~-~~-------~~~-----------~G~~~~G~V~~i~ 597 (1924)
.+.+|+.+.+.|..+ +..+..+-+... . ++.-..-+.. |. ..+ .|..+.|.|.++.
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~WyRa~V~~~~ 91 (226)
T 4b9x_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEIL 91 (226)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC--CCCCTTCEEEEEETTTTEEEEEEEEEEC
T ss_pred EcCCCCEEEEEEEEEeCCCEEEEEEcCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEEC
Confidence 578999999999998 678888765321 0 0000001111 10 111 3567788899987
Q ss_pred cce-EEEEEc-CCeEEEeeCcccCCCCCCCCCCCCCCCCEEEEEEEEEcCCCCEEEEEEeeCCCCccc-----ccccCCC
Q 000176 598 KHG-CFVRFY-NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE-----DDLVKLG 670 (1924)
Q Consensus 598 ~~G-~~V~f~-~~v~g~lp~sel~~~~~~~~~~~~~vGq~v~~rVl~vd~~~~ri~lS~k~~~~~~~~-----~~~~~~G 670 (1924)
+.| +-|.|- -|-...+|.+++..- .+.-.--+.|-++|++-++-|.++ .|.. ...+..|
T Consensus 92 ~~~~~~V~~vDyGn~~~v~~~~l~~l---~~~f~~lP~qA~~c~L~~v~p~~~-----------~w~~ea~~~f~~l~~~ 157 (226)
T 4b9x_A 92 PSGNVKVHFVDYGNVEEVTTDQLQAI---LPQFLLLPFQGMQCWLVDIQPPNK-----------HWTKEATARFQACVVG 157 (226)
T ss_dssp SSSEEEEECTTTCCEEEEEGGGEECC---CGGGSSSCBCCEEEEESSEECSSS-----------SCCHHHHHHHHHHHTT
T ss_pred CCCeEEEEEEecCCEEEEEHHHhccC---hHHHcccccceEEEEEecEECCCC-----------CCCHHHHHHHHHHHCC
Confidence 665 445442 245678899888522 111112367889999887765322 2221 1344578
Q ss_pred CEEEEEEEEEccCcEEEEE
Q 000176 671 SLVSGVVDVVTPNAVVVYV 689 (1924)
Q Consensus 671 ~iv~g~V~~~~~~g~~V~l 689 (1924)
..+.++|....++++.|.|
T Consensus 158 k~l~~~V~~~~~~~~~V~L 176 (226)
T 4b9x_A 158 LKLQARVVEITANGVGVEL 176 (226)
T ss_dssp CCEEEEEEEECSSCEEEEE
T ss_pred CeEEEEEEEEeCCeEEEEE
Confidence 8899999999999998888
No 412
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=20.68 E-value=1.4e+02 Score=26.13 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=36.7
Q ss_pred EEEEEEEecCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCEEEEEEEE
Q 000176 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFVKCKVLE 1318 (1924)
Q Consensus 1264 ~g~V~~v~~~~~g~~V~l~~~~~G~v~~selsd~~~~~p~~~~~~G~~v~~~Vl~ 1318 (1924)
+|+|...++..+.=|+.-..+.+-++|++.+... ....+.+|+.|.+.+-.
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~ 52 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEME----GFKTLKEGQVVEFEIQE 52 (66)
T ss_dssp CEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCS----SCCCCCSSSEEEEEEEC
T ss_pred cEEEEEEECCCCEEEEecCCCceEEEEhHHcccc----CCCCCCCCCEEEEEEEE
Confidence 5888888765445566666678899999998532 22456799999988643
No 413
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=20.68 E-value=2.3e+02 Score=27.20 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=34.2
Q ss_pred cCCcCcccE--EEEEEEEEecccEEEEcCCCcEEEEeccccCchhhccccccccCCCCCCcccCCCEEEEE
Q 000176 128 LKNISAGMK--LWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCI 196 (1924)
Q Consensus 128 ~k~l~~G~~--~lg~V~~i~~~~l~vslp~~l~g~v~~~~is~~~~~~~~~~~~~~~l~~~f~~Gq~v~~~ 196 (1924)
...+.+|++ .||||.+-+.--|++. ..+.+..|.++.+=+ +| ..++|.||.+.
T Consensus 15 lp~~~~G~KVRFLGCV~sY~tg~L~Le-~~~~~v~VDV~lvL~-------------~l--~~~vGeWvNVv 69 (105)
T 3kf6_B 15 INDCKDGQKLRFLGCVQSYKNGILRLI-DGSSSVTCDVTVVLP-------------DV--SIQKHEWLNIV 69 (105)
T ss_dssp GGGSCTTCEEEEEEEEEEEETTEEEEE-ETTEEEEEECTTSCC-------------SS--CCCTTCEEEEE
T ss_pred ccCCCCCCEEEEEEEeeeeccEEEEEc-cCCcEEEEEHHHhhc-------------hh--eeecccEEEEE
Confidence 455667776 5999999995556666 444554554433322 23 67899999875
No 414
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=20.54 E-value=52 Score=30.98 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=36.2
Q ss_pred EEEEEEEEeecceE-EEEEecCceeEEeeccccCcccccCcccccCCCcEEEEEEE
Q 000176 1460 IVIGQIKRVESYGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1514 (1924)
Q Consensus 1460 ~v~G~V~~v~~~Gv-FV~l~~~~v~gl~h~sels~~~~~~~~~~~~~Gd~Vk~~Vl 1514 (1924)
...|+|+... .|. ||.-++.+-+-++|+|.|... ..+++||+|...|.
T Consensus 8 r~~G~Vk~f~-KGfGFI~~~~gg~DvFvH~s~i~~~------~~L~~G~~V~F~v~ 56 (89)
T 1x65_A 8 REMGVIAAMR-DGFGFIKCVDRDVRMFFHFSEILDG------NQLHIADEVEFTVV 56 (89)
T ss_dssp CEEEEEEECC-TTBCEEEESSSSSCCCCBTTGGGGS------CCCCTTCCEEECCB
T ss_pred ceeEEEEEEe-CCcceeecCCCCccEEEEhhhccCC------CCCCCCCEEEEEEE
Confidence 4689999885 555 777765457889999998752 36789999987653
No 415
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.47 E-value=7.7e+02 Score=25.98 Aligned_cols=99 Identities=17% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHHH---------------------HHhc-CHHHHH----HH
Q 000176 1751 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR---------------------LLKQ-QQEGVQ----AV 1804 (1924)
Q Consensus 1751 i~~~l~~i~~~~gk~e~A~~~fe~~lk~~~~~~~vw~~~a~~---------------------l~~~-~~~~A~----~l 1804 (1924)
.+..|+.++.++|..++|...|.+..++++--+.+-.....- ..-. -.+--. +.
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ 195 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSL 195 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHH
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000176 1805 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1850 (1924)
Q Consensus 1805 ~~ral~~~p~~~~~~~~~~~A~le~~~g~~e~Ar~lfe~aL~~~Pk 1850 (1924)
.++-....|.-- .-+...+|..++..|..++.+.+|+.+-+.+|+
T Consensus 196 ikkY~n~iPGiG-SY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 196 VKKYMEHVPGIG-SYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHTSTTTHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhCCCch-hHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Done!