BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000177
(1922 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 37.7 bits (86), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
Query: 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG 1563
CR + + C+ + D I G +KI+D N+ T H V +Q
Sbjct: 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ---YD 182
Query: 1564 ETQLLLSSSSQDVHLW--NASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILL 1621
E ++ SS V +W N + +H E RF+N + T + DR I +
Sbjct: 183 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-----GMMVTCSKDRSIAV 237
Query: 1622 YDIQT 1626
+D+ +
Sbjct: 238 WDMAS 242
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 33.9 bits (76), Expect = 0.87, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 172
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 173 DGLCRIWDTAS 183
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 33.9 bits (76), Expect = 0.87, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 172
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 173 DGLCRIWDTAS 183
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 33.9 bits (76), Expect = 0.88, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 172
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 173 DGLCRIWDTAS 183
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 33.9 bits (76), Expect = 0.89, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 175
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 176 DGLCRIWDTAS 186
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 33.9 bits (76), Expect = 0.89, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 168
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 169 DGLCRIWDTAS 179
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 33.9 bits (76), Expect = 0.89, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 186
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 187 DGLCRIWDTAS 197
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 33.9 bits (76), Expect = 0.89, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 174
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 175 DGLCRIWDTAS 185
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 33.9 bits (76), Expect = 0.90, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 165
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 166 DGLCRIWDTAS 176
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 33.9 bits (76), Expect = 0.90, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 169
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 170 DGLCRIWDTAS 180
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-5-
Nitrophenyl]benzamide
Length = 312
Score = 33.9 bits (76), Expect = 0.91, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 169
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 170 DGLCRIWDTAS 180
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 33.9 bits (76), Expect = 0.93, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 170
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 171 DGLCRIWDTAS 181
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 33.9 bits (76), Expect = 0.96, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 175
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 176 DGLCRIWDTAS 186
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone
Mark That Supports Euchromatin Maintenance
Length = 318
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 175
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 176 DGLCRIWDTAS 186
>pdb|3NI9|A Chain A, Ges-2 Carbapenemase Apo Form
pdb|3NI9|B Chain B, Ges-2 Carbapenemase Apo Form
pdb|3NIA|A Chain A, Ges-2 Carbapenemase Tazobactam Complex
Length = 269
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 812 DRKL--GPALVRTRWPAVDRFLSLNGHITLLELCQA 845
DRKL GP ++ PA +RFL+ +GH+T+LE QA
Sbjct: 68 DRKLSYGPDMIVEWSPATERFLA-SGHMTVLEAAQA 102
>pdb|3TSG|A Chain A, Crystal Structure Of Ges-14
pdb|3TSG|B Chain B, Crystal Structure Of Ges-14
Length = 287
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 812 DRKL--GPALVRTRWPAVDRFLSLNGHITLLELCQA 845
DRKL GP ++ PA +RFL+ +GH+T+LE QA
Sbjct: 86 DRKLSYGPDMIVEWSPATERFLA-SGHMTVLEAAQA 120
>pdb|3V3R|A Chain A, Crystal Structure Of Ges-11
pdb|3V3R|B Chain B, Crystal Structure Of Ges-11
Length = 287
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 812 DRKL--GPALVRTRWPAVDRFLSLNGHITLLELCQA 845
DRKL GP ++ PA +RFL+ +GH+T+LE QA
Sbjct: 86 DRKLSYGPDMIVEWSPATERFLA-SGHMTVLEAAQA 120
>pdb|3V3S|A Chain A, Crystal Structure Of Ges-18
pdb|3V3S|B Chain B, Crystal Structure Of Ges-18
Length = 287
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 812 DRKL--GPALVRTRWPAVDRFLSLNGHITLLELCQA 845
DRKL GP ++ PA +RFL+ +GH+T+LE QA
Sbjct: 86 DRKLSYGPDMIVEWSPATERFLA-SGHMTVLEAAQA 120
>pdb|2QPN|A Chain A, Ges-1 Beta-Lactamase
pdb|2QPN|B Chain B, Ges-1 Beta-Lactamase
Length = 287
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 812 DRKL--GPALVRTRWPAVDRFLSLNGHITLLELCQA 845
DRKL GP ++ PA +RFL+ +GH+T+LE QA
Sbjct: 86 DRKLSYGPDMIVEWSPATERFLA-SGHMTVLEAAQA 120
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
Length = 334
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 191
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 192 DGLCRIWDTAS 202
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 193
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 194 DGLCRIWDTAS 204
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 172
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 173 DGLCRIWDTAS 183
Score = 30.8 bits (68), Expect = 8.7, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 1482 SGVHRNRRDRQFVYSRF----RPW--------RTCRDDAGALLTCITFLGDSSHIAVGSH 1529
S VH NR V S + R W +T DD ++ + F + +I +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 1530 TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQD--VHLWN 1580
+LK++D + L++ T H+ + ++ S + S S+D V++WN
Sbjct: 216 DNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573
C F S+ I GS + ++I+D + L++ +H PV+ V H + + L++SSS
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV--HFNRDGSLIVSSSY 172
Query: 1574 QDV-HLWNASS 1583
+ +W+ +S
Sbjct: 173 DGLCRIWDTAS 183
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571
+TC+ + D + I G EL++++ + + L H+AP+ V+ + G T ++
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNVLNFHRAPIVSVKWNKDG-THIISMD 168
Query: 1572 SSQDVHLWNASSIAGGPMHSFE 1593
LWN I+G M FE
Sbjct: 169 VENVTILWNV--ISGTVMQHFE 188
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron
Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite Degron
Recognition By ApcC
Length = 431
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET 1565
+ G ++ + ++ + +++AVG+ + E++++D L + TSH A V +
Sbjct: 155 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS-----WN 209
Query: 1566 QLLLSSSSQDVHL 1578
+LSS S+ H+
Sbjct: 210 SYILSSGSRSGHI 222
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET 1565
+ G ++ + ++ + +++AVG+ + E++++D L + TSH A V LS +
Sbjct: 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV----GSLSWNS 199
Query: 1566 QLLLSSSSQDVHL 1578
+LSS S+ H+
Sbjct: 200 -YILSSGSRSGHI 211
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 1510 ALLTCITFLGDSSHI-AVGSHTKELKIFD-SNSSSPLESCTSHQAPVTLVQSHLSGETQL 1567
A + C++F S I A GS K + ++D N L S SH+ + VQ ET L
Sbjct: 282 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 341
Query: 1568 LLSSSSQDVHLWNASSIA 1585
S + + +H+W+ S I
Sbjct: 342 ASSGTDRRLHVWDLSKIG 359
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 1506 DDAGALLTCITFLGDSSHI-AVGSHTKELKIFD-SNSSSPLESCTSHQAPVTLVQSHLSG 1563
D A + C++F S I A GS K + ++D N L S SH+ + VQ
Sbjct: 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 333
Query: 1564 ETQLLLSSSSQDVHLWNASSIA 1585
ET L S + + +H+W+ S I
Sbjct: 334 ETILASSGTDRRLHVWDLSKIG 355
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 1506 DDAGALLTCITFLGDSSHI-AVGSHTKELKIFD-SNSSSPLESCTSHQAPVTLVQSHLSG 1563
D A + C++F S I A GS K + ++D N L S SH+ + VQ
Sbjct: 276 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 335
Query: 1564 ETQLLLSSSSQDVHLWNASSIA 1585
ET L S + + +H+W+ S I
Sbjct: 336 ETILASSGTDRRLHVWDLSKIG 357
>pdb|2NZ6|A Chain A, Crystal Structure Of The Ptprj Inactivating Mutant C1239s
Length = 316
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 1720 TITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVL 1779
T TF A +IY I N DV V+ R+ PL ++ + +++CVL
Sbjct: 251 TGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQ---------TEDQYVFLNQCVL 301
Query: 1780 DFATERTDSFVGLI 1793
D + DS V LI
Sbjct: 302 DIVRSQKDSKVDLI 315
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 1720 TITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVL 1779
T TF A +IY I N DV V+ R+ PL ++ + +++CVL
Sbjct: 251 TGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQ---------TEDQYVFLNQCVL 301
Query: 1780 DFATERTDSFVGLI 1793
D + DS V LI
Sbjct: 302 DIVRSQKDSKVDLI 315
>pdb|1M1J|C Chain C, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|F Chain F, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 409
Score = 31.2 bits (69), Expect = 5.9, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 17/141 (12%)
Query: 279 DQDIERVTHGDECGADDGEPHDGLAAGIDMSE-AYTDAREGKTKLGDNDETGRDDSSRRR 337
++D R+T+ G + G+ DG G D S+ +YT + DND + + +
Sbjct: 270 EEDKYRLTYAYFIGGEAGDAFDGFNFGDDPSDKSYTYHNGMRFSTFDNDNDNFEGNCAEQ 329
Query: 338 MNRGWIRSR-GKGRIN-----EGAIETDQGLTSPVSGSRLGQVRSIRDRSVSKSSDTKK- 390
GW +R G +N G D G S +G + RDR S T K
Sbjct: 330 DGSGWWMNRCHAGHLNGPYYIGGVYSRDTGTNSYDNGIIWA---TWRDRWYSMKKTTMKI 386
Query: 391 ------APDGRKHSGTIGSDG 405
+ DG++HSG + G
Sbjct: 387 IPFNRLSIDGQQHSGGLKQVG 407
>pdb|1EI3|C Chain C, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|F Chain F, Crystal Structure Of Native Chicken Fibrinogen
Length = 409
Score = 31.2 bits (69), Expect = 6.3, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 17/141 (12%)
Query: 279 DQDIERVTHGDECGADDGEPHDGLAAGIDMSE-AYTDAREGKTKLGDNDETGRDDSSRRR 337
++D R+T+ G + G+ DG G D S+ +YT + DND + + +
Sbjct: 270 EEDKYRLTYAYFIGGERGDAFDGFNFGDDPSDKSYTYHNGMRFSTFDNDNDNFEGNCAEQ 329
Query: 338 MNRGWIRSR-GKGRIN-----EGAIETDQGLTSPVSGSRLGQVRSIRDRSVSKSSDTKK- 390
GW +R G +N G D G S +G + RDR S T K
Sbjct: 330 DGSGWWMNRCHAGHLNGPYYIGGVYSRDTGTNSYDNGIIWA---TWRDRWYSMKKTTMKI 386
Query: 391 ------APDGRKHSGTIGSDG 405
+ DG++HSG + G
Sbjct: 387 IPFNRLSIDGQQHSGGLKQVG 407
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 1515 ITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS- 1573
+ + D +A G + ++I+D+ SS P + T+H A V V + ++ LL +
Sbjct: 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAV-AWCPWQSNLLATGGGT 281
Query: 1574 --QDVHLWNASSIA 1585
+ +H WNA++ A
Sbjct: 282 MDKQIHFWNAATGA 295
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 1509 GALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL 1568
G ++ + ++ + +++AVG+ + E++++D L + TSH A V + +
Sbjct: 67 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS-----WNSYI 121
Query: 1569 LSSSSQDVHL 1578
LSS S+ H+
Sbjct: 122 LSSGSRSGHI 131
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 1720 TITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVL 1779
T TF A +IY I N DV V+ R+ PL ++ + +++CVL
Sbjct: 251 TGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQ---------TEDQYVFLNQCVL 301
Query: 1780 DFATERTDSFVGLI 1793
D + DS V LI
Sbjct: 302 DIIRAQKDSKVDLI 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,221,746
Number of Sequences: 62578
Number of extensions: 1681270
Number of successful extensions: 3760
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 3712
Number of HSP's gapped (non-prelim): 81
length of query: 1922
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1809
effective length of database: 7,902,023
effective search space: 14294759607
effective search space used: 14294759607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)