BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000177
(1922 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M086|DCAF1_ARATH DDB1- and CUL4-associated factor homolog 1 OS=Arabidopsis thaliana
GN=DCAF1 PE=1 SV=2
Length = 1883
Score = 1971 bits (5105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1124/1846 (60%), Positives = 1350/1846 (73%), Gaps = 181/1846 (9%)
Query: 34 KKVEEELMAKAQKLMEKITSSPDNPNPSVLHALSSLFEIQESLYLEESGFSSNNARASHN 93
+ VE+EL+AKAQKLME ITS +NPNP++LHALS L E QESL+LEE+G SN AR SHN
Sbjct: 44 QSVEDELIAKAQKLMEDITSVANNPNPNILHALSQLLESQESLFLEENGHFSN-ARGSHN 102
Query: 94 IGRLGNLVRENDDFFELISSKFLSESRYSTSVQAAAARLVLSCSLTWIYPHAFEEPVVDN 153
G+L L+REND+FFELISS FLSE+ YST+V+AA+ARL+++CSLTW+YPH F++ V +N
Sbjct: 103 SGKLCILIRENDEFFELISSTFLSENSYSTAVKAASARLLMNCSLTWMYPHVFDDAVTEN 162
Query: 154 VKNWVMDETARLSCEDRHLKHHMSRKEASDSEMLKTYATGLLAVCLAGGGQVVEDVLTSG 213
KNWVM+E + ED ++KEASD EMLKTY+TGLLA+ LA GQ+VEDVLTSG
Sbjct: 163 FKNWVMEEAVKFPGEDS------AKKEASDFEMLKTYSTGLLALSLASRGQIVEDVLTSG 216
Query: 214 LSAKLMRYLRIRVLGETSQKDANHLAESKNSASATSLRGREEGRVRLRQILEHPDERTID 273
LSAKLM YLR+RVL E S H E+K+ SL+ +EEGR R+R+I++
Sbjct: 217 LSAKLMHYLRVRVLKEPSTSRI-HTTETKH----VSLKTKEEGRSRVRKIVD-------- 263
Query: 274 ERSLDDQDIERVTHGDECGADDGEPHDGLAAGIDMSEAY--TDAREGKTKLGDNDETGRD 331
+++ + G E G D +P DG ID + + + + K K GD D + RD
Sbjct: 264 --TVEGDHVLETDSGREMGQTDVQP-DG-EFEIDGRDVFNVSGVVDCKIKPGD-DNSVRD 318
Query: 332 DSSRRRMNRGWIRSRGKGRINEGAIETDQGLTSPVSGSRLGQVRSIRDRSVSKSSDTKKA 391
D SR R+NR +SRG+GR++EGA +T+ L SP RLG++ +RDR +SK SD + A
Sbjct: 319 DPSRHRLNRS--KSRGRGRVHEGAPDTEVLLASP----RLGRLL-VRDRDLSKISDGRNA 371
Query: 392 PDGRKHSGTIGSDGVFMEREDGDDCFQECRVGSKDISDMVKKAVRAAEAEARAANAPLEA 451
D G + S + +ERED D+CFQ C +G+K+I+D+VK+AV AAE EARAA+AP +A
Sbjct: 372 EDVTVCLGKMKSGIMEIEREDNDECFQGCIIGTKNITDLVKRAVGAAETEARAAHAPDDA 431
Query: 452 IKAAGDAAAEVVKSAASEEFKTTNDEDAALLAASRAASTVIDAADAVEVSRNSISNNVDS 511
KAAGDAAAE+VK+AA EEFK++ E+AA+ AA+RAA TVIDAA EVSRN
Sbjct: 432 AKAAGDAAAELVKTAALEEFKSSGSEEAAVSAATRAAITVIDAA---EVSRNP------- 481
Query: 512 VSVSVTETETNEDVEEYFIPDVESLAQLREKYCIQCLETLGEYVEVLGPVLHEKGVDVCL 571
VT +T DV E +PD+ESLAQL+EKYCIQCLE LGEYVEVLGPVLHEKGVDVC+
Sbjct: 482 --TCVTSDQTT-DVSEVSLPDIESLAQLQEKYCIQCLEILGEYVEVLGPVLHEKGVDVCI 538
Query: 572 ALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRNNQTFFG 631
LL+R+S+ ++ S V+ LLPDVMKLICALAAHRKFAA+FV+R G+ KLLAVPR ++TF+G
Sbjct: 539 VLLERTSQLDDRSTVSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSETFYG 598
Query: 632 LSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVFRA 691
LSSCL+TIGSLQGIMERVCALP V+HQ+V+LAI+LL+C+QDQARKN+ALFFAAAFVFRA
Sbjct: 599 LSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRA 658
Query: 692 IIDAFDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVLTSSEKQIAY 751
I+DAFDAQD LQKLL +L DAASVR+G N DRS PEV+TSSEKQ+A+
Sbjct: 659 ILDAFDAQDSLQKLLAILKDAASVRTGAN-------------TDRSAPEVMTSSEKQMAF 705
Query: 752 HTCVALRQYFRAHLLLLVDSIRPNKSNRSA--GRNIPNVRAAYKPLDISNEAIDAVFLQL 809
HTC ALRQYFRAHLLLLVDSIRP++ +R PN+RAAYKPLDISNEA+DA+FLQL
Sbjct: 706 HTCFALRQYFRAHLLLLVDSIRPSRISRGGVPSSMKPNIRAAYKPLDISNEAVDAIFLQL 765
Query: 810 QKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHDLLQYALGVLHIVTLV 869
QKDR+LGP V+ +WPAV+ FL+ +GH+T+LELCQ PPV+RYLHDLLQYA GVLHIVT +
Sbjct: 766 QKDRRLGPTFVKAQWPAVNNFLASSGHVTMLELCQTPPVDRYLHDLLQYAFGVLHIVTSI 825
Query: 870 PNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLVCPPPSISNKPP 929
P+ RK I +ATLSNN GIAVILDAAN +S VDPEIIQPALNVLINLVCPPPS+SNKPP
Sbjct: 826 PDGRKAIAHATLSNNRAGIAVILDAANISNSIVDPEIIQPALNVLINLVCPPPSLSNKPP 885
Query: 930 LLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVDSSLLDRGSSAN 989
L AQ Q V GQ + PS + +
Sbjct: 886 L-AQNHQPVPGQATTRPSTD------------------------------------VAVG 908
Query: 990 TQLACSTSQTPVPTPTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRANNGIKVL 1049
TQ + QTPV +SGLVGDRRI LGAG G AGLAA+LEQ YRQAREAVR N+GIK+L
Sbjct: 909 TQSTGNAPQTPVAPASSGLVGDRRIFLGAGTGSAGLAAKLEQVYRQAREAVRGNDGIKIL 968
Query: 1050 LHLLQPRIY-SPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGGQT 1108
L LLQPRIY +PPA DCLRALACRVLLGLARDDTIA ILTKL+VGK LSELIRDSGGQ+
Sbjct: 969 LKLLQPRIYVNPPATPDCLRALACRVLLGLARDDTIAQILTKLEVGKSLSELIRDSGGQS 1028
Query: 1109 PATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAATPTLRRIERAAIAAATPISYHS 1168
T+QGRWQAEL+QVA+ELI IVTNSG A+TL A+DAATPTLRRIERAAIAAATPI+Y S
Sbjct: 1029 SGTDQGRWQAELAQVALELIGIVTNSGHATTLTASDAATPTLRRIERAAIAAATPITYDS 1088
Query: 1169 RELLLLIHEHLQASGLVTTAAQLLKEAQLTPL---------------------------- 1200
+ELLLLIHEHLQASGL TA+ LLKEAQLTPL
Sbjct: 1089 KELLLLIHEHLQASGLGDTASALLKEAQLTPLPSSASPSSIAYSTTQEMSTPLAQEQWPS 1148
Query: 1201 -----------PSLAA----PSS------------LAHQISTQESPSIQIQWPSGRSP-G 1232
P + A P+S LA +P Q QWPSGR+ G
Sbjct: 1149 GRANSGFFTSKPKVCAHDEDPNSRSNAALSAKKKHLASSTLEMPTPVAQQQWPSGRANCG 1208
Query: 1233 FLTGKSKLAARDEDISLKCDSSMSSKKKQLVFSPSFNLQSRHQSQSHDSQTPSSRKV--F 1290
F K+ ARDED S + +++ S+KKKQL FSPSF+ QSR QS SHD+ S++++
Sbjct: 1209 FCPSIPKINARDEDPSSRGNAAPSAKKKQLTFSPSFSSQSRKQSFSHDALPQSTQRINCC 1268
Query: 1291 SNSKQSAVPSVLEIPHESVSKSNPDTDSQSKTPIALPMKRKLSELKDTGLSLSGKRLHTG 1350
SNS A+ E E V K++ D D+Q KTPI+ P KRKLSEL+D+ S+ GKR+ G
Sbjct: 1269 SNS-DPALADTSETAAELVLKNDLDADAQFKTPISFPRKRKLSELRDS--SVPGKRIDLG 1325
Query: 1351 DLGLRSPSCPTPNSVRKSSLLNDPQGFSTPGSLAEYLDDNQCGNYHAGQATPSFQLGALN 1410
+ R++S D G TP S LD NQ G+ GQ TP+ QL +
Sbjct: 1326 E--------------RRNSTFADGSGLQTPAS---ALDANQSGSSRLGQMTPASQLRLPS 1368
Query: 1411 DPQPSNSERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTA 1470
DPQPSN ER++LDSLVVQYLKHQHRQC APITTLPP+SLLHPHVCPEPKR L+AP N+T
Sbjct: 1369 DPQPSNPERLSLDSLVVQYLKHQHRQCLAPITTLPPVSLLHPHVCPEPKRLLEAPLNMTG 1428
Query: 1471 RLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHT 1530
RLGTRE +S YSGVH NRRDRQFV+SRF+ WR+ RD+ AL TCI LG ++HIAVGSH
Sbjct: 1429 RLGTRELQSFYSGVHGNRRDRQFVFSRFKSWRSFRDET-ALFTCIALLGGTNHIAVGSHA 1487
Query: 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMH 1590
E+KIF+++S S LES + HQAPVTLVQ ++S +TQLLLSSSS DV LW+ASSI GGP H
Sbjct: 1488 GEIKIFEASSGSMLESVSGHQAPVTLVQPYVSRDTQLLLSSSSSDVQLWDASSITGGPRH 1547
Query: 1591 SFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650
SF+GCKAA+FSNSG FAAL E S + +LLYD+QT KL+DT + R + YS +
Sbjct: 1548 SFDGCKAAKFSNSGLQFAALSCEASRKDVLLYDVQTCSPCQKLTDTVT--SSRSNPYSLV 1605
Query: 1651 HFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKFRLL 1710
HFSP DT++LWNG+LWDRR V RFDQFTD+GGGGFHP+ NEVIINSE+WD+R F+LL
Sbjct: 1606 HFSPCDTLILWNGVLWDRRIPEKVRRFDQFTDYGGGGFHPSRNEVIINSEIWDMRTFKLL 1665
Query: 1711 RSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIA 1770
RSVPSLDQT ITFN+RGDVIYA+LRRN+EDVMSAVHTRRVKHPLFAAFRT+DAINYSDIA
Sbjct: 1666 RSVPSLDQTAITFNSRGDVIYAMLRRNIEDVMSAVHTRRVKHPLFAAFRTLDAINYSDIA 1725
Query: 1771 TIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRRPT 1816
TIPVDRC+LDFATE TDSF+GLITM+DQEDMFSSAR+YEIGRRRPT
Sbjct: 1726 TIPVDRCLLDFATEPTDSFLGLITMEDQEDMFSSARMYEIGRRRPT 1771
>sp|Q9Y4B6|VPRBP_HUMAN Protein VPRBP OS=Homo sapiens GN=VPRBP PE=1 SV=3
Length = 1507
Score = 240 bits (613), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 148/411 (36%), Positives = 216/411 (52%), Gaps = 37/411 (9%)
Query: 1421 TLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKST 1480
TLDS++ +YL+ QH +C P+ T PP SL PH CPEPK+ AP N T+RL R
Sbjct: 1003 TLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEPKQRRQAPINFTSRLNRRASFPK 1062
Query: 1481 YSGVHRNRRDRQFVYSRFRPWRTCR----DDAGALLTCITFLGDSSHIAVGSHTKELKIF 1536
Y GV DR ++SRFRP R D++G TC F + +G+ T +LK++
Sbjct: 1063 YGGVDGGCFDRHLIFSRFRPISVFREANEDESG--FTCCAFSARERFLMLGTCTGQLKLY 1120
Query: 1537 DSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVH-LWNASSIAGGPMHSFEGC 1595
+ S S H + +T ++ G L ++ SQ + LW S+ HSF
Sbjct: 1121 NVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMK-HSFTED 1179
Query: 1596 KAARFSNSGNLFAALPTETSDRGI-------LLYDIQT-YQLEAKLSDTSVNLTGRGHAY 1647
FS + DR I +YDIQT +L + N R A
Sbjct: 1180 HYVEFSK----------HSQDRVIGTKGDIAHIYDIQTGNKLLTLFNPDLANNYKRNCAT 1229
Query: 1648 SQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKF 1707
F+P+D ++L +G+LWD R++ +H+FD+F + G FHP G EVIIN+E+WDLR F
Sbjct: 1230 ----FNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTF 1285
Query: 1708 RLLRSVPSLDQTTITFNARGDVIY-AILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINY 1766
LL +VP+LDQ + FN G V+Y A+L+ + ED + R+K P ++FRT +A +Y
Sbjct: 1286 HLLHTVPALDQCRVVFNHTGTVMYGAMLQADDED---DLMEERMKSPFGSSFRTFNATDY 1342
Query: 1767 SDIATIPVDRCVLDFATERTDSFVGLITMD---DQEDMFSSARIYEIGRRR 1814
IATI V R + D T+ D ++ +I D +M + R+YE+GR+R
Sbjct: 1343 KPIATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEVGRQR 1393
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/393 (30%), Positives = 200/393 (50%), Gaps = 35/393 (8%)
Query: 539 LREKYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLIC 598
+ ++ +Q L LGEY E+L P+ + G L+ ++ + V +L + +K +
Sbjct: 325 IEQRLILQYLTPLGEYQELL-PIFMQLGSR---ELMMFYIDLKQTNDV-LLTFEALKHLA 379
Query: 599 ALAAHRKFAALFVDRGGMQKLLAVPRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVH 658
+L H KFA FV GG+QKLL +PR + G+S CL+ + Q MERVC P +V+
Sbjct: 380 SLLLHNKFATEFVAHGGVQKLLEIPRPSMAATGVSMCLYYLSYNQDAMERVCMHPHNVLS 439
Query: 659 QLVELAIQLLECTQDQARKNAALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDAASVRSG 718
+V + L+EC+ +A +FF+ F FRA+++ FD DGL++L+ L++
Sbjct: 440 DVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRYDGLRRLVNLIS-------- 491
Query: 719 VNAGAVGLSSSTSLRNDRSPPEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSN 778
+ L +L +D E+ S +Q HTC+ALR+YF AHL + ++ ++
Sbjct: 492 -TLEILNLEDQGALLSDD---EIFAS--RQTGKHTCMALRKYFEAHLAIKLEQVK-QSLQ 544
Query: 779 RSAGRNIPNVRAAYKPLDISNEAIDAVFLQLQKDRKLGPALVRTRWPAVDRFLSLNGHIT 838
R+ G + + + YK ++E I + L + GPA + W + FL L+
Sbjct: 545 RTEGGILVHPQPPYKACSYTHEQIVEMMEFLI---EYGPA--QLYWEPAEVFLKLSCVQL 599
Query: 839 LLELCQ-APPVERYL--HDLLQYALGVLHIVTLVPN-------SRKMIVNATLSNNHTGI 888
LL+L A + Y +D +++AL VL I+T+VP S ++ A + + GI
Sbjct: 600 LLQLISIACNWKTYYARNDTVRFALDVLAILTVVPKIQLQLAESVDVLDEAGSTVSTVGI 659
Query: 889 AVILDAANAVSSYVDPEIIQPALNVLINLVCPP 921
++IL A D EI + AL ++IN VC P
Sbjct: 660 SIILGVAEGEFFIHDAEIQKSALQIIINCVCGP 692
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 25/193 (12%)
Query: 1030 EQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILT 1089
E + V++NNGIKVLL LL I P D +RALAC+ L+GL+R T+ I++
Sbjct: 719 EHTLAKMWNVVQSNNGIKVLLSLLS--IKMPITDADQIRALACKALVGLSRSSTVRQIIS 776
Query: 1090 KLQVGK--KLSELIRDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAAT 1147
KL + ++ +L+++ Q ++ + + A ELI V SG+ L TD
Sbjct: 777 KLPLFSSCQIQQLMKEPVLQDKRSDH----VKFCKYAAELIERV--SGKP-LLIGTDV-- 827
Query: 1148 PTLRRIERAAIAAATPISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQL---------- 1197
+L R+++A + A + IS+ +ELLLLI HL + GL TA L KEA L
Sbjct: 828 -SLARLQKADVVAQSRISFPEKELLLLIRNHLISKGLGETATVLTKEADLPMTAASHSSA 886
Query: 1198 -TPLPSLAAPSSL 1209
TP+ + A+P SL
Sbjct: 887 FTPVTAAASPVSL 899
>sp|Q80TR8|VPRBP_MOUSE Protein VPRBP OS=Mus musculus GN=Vprbp PE=2 SV=4
Length = 1506
Score = 240 bits (612), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 148/411 (36%), Positives = 216/411 (52%), Gaps = 37/411 (9%)
Query: 1421 TLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKST 1480
TLDS++ +YL+ QH +C P+ T PP SL PH CPEPK+ AP N T+RL R
Sbjct: 1002 TLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEPKQRRQAPINFTSRLNRRASFPK 1061
Query: 1481 YSGVHRNRRDRQFVYSRFRPWRTCR----DDAGALLTCITFLGDSSHIAVGSHTKELKIF 1536
Y GV DR ++SRFRP R D++G TC F + +G+ T +LK++
Sbjct: 1062 YGGVDGGCFDRHLIFSRFRPISVFREANEDESG--FTCCAFSARERFLMLGTCTGQLKLY 1119
Query: 1537 DSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVH-LWNASSIAGGPMHSFEGC 1595
+ S S H + +T ++ G L ++ SQ + LW S+ HSF
Sbjct: 1120 NVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMK-HSFTED 1178
Query: 1596 KAARFSNSGNLFAALPTETSDRGI-------LLYDIQT-YQLEAKLSDTSVNLTGRGHAY 1647
FS + DR I +YDIQT +L + N R A
Sbjct: 1179 HYVEFSK----------HSQDRVIGTKGDIAHIYDIQTGNKLLTLFNPDLANNYKRNCAT 1228
Query: 1648 SQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKF 1707
F+P+D ++L +G+LWD R++ +H+FD+F + G FHP G EVIIN+E+WDLR F
Sbjct: 1229 ----FNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTF 1284
Query: 1708 RLLRSVPSLDQTTITFNARGDVIY-AILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINY 1766
LL +VP+LDQ + FN G V+Y A+L+ + ED + R+K P ++FRT +A +Y
Sbjct: 1285 HLLHTVPALDQCRVVFNHTGTVMYGAMLQADDED---DLLEERMKSPFGSSFRTFNATDY 1341
Query: 1767 SDIATIPVDRCVLDFATERTDSFVGLITMD---DQEDMFSSARIYEIGRRR 1814
IATI V R + D T+ D ++ +I D +M + R+YE+GR+R
Sbjct: 1342 KPIATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEVGRQR 1392
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/393 (30%), Positives = 200/393 (50%), Gaps = 35/393 (8%)
Query: 539 LREKYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLIC 598
+ ++ +Q L LGEY E+L P+ + G L+ ++ + V +L + +K +
Sbjct: 324 IEQRLILQYLTPLGEYQELL-PIFMQLGSR---ELMMFYIDLKQTNDV-LLTFEALKHLA 378
Query: 599 ALAAHRKFAALFVDRGGMQKLLAVPRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVH 658
+L H KFA FV GG+QKLL +PR + G+S CL+ + Q MERVC P +V+
Sbjct: 379 SLLLHNKFATEFVAHGGVQKLLEIPRPSMAATGVSMCLYYLSYNQDAMERVCMHPHNVLS 438
Query: 659 QLVELAIQLLECTQDQARKNAALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDAASVRSG 718
+V + L+EC+ +A +FF+ F FRA+++ FD DGL++L+ L++
Sbjct: 439 DVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRYDGLRRLVNLIS-------- 490
Query: 719 VNAGAVGLSSSTSLRNDRSPPEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSN 778
+ L +L +D E+ S +Q HTC+ALR+YF AHL + ++ ++
Sbjct: 491 -TLEILNLEDQGALLSDD---EIFAS--RQTGKHTCMALRKYFEAHLAIKLEQVK-QSLQ 543
Query: 779 RSAGRNIPNVRAAYKPLDISNEAIDAVFLQLQKDRKLGPALVRTRWPAVDRFLSLNGHIT 838
R+ G + + + YK ++E I + L + GPA + W + FL L+
Sbjct: 544 RTEGGILVHPQPPYKACSYTHEQIVEMMEFLI---EYGPA--QLYWEPAEVFLKLSCVQL 598
Query: 839 LLELCQ-APPVERYL--HDLLQYALGVLHIVTLVPN-------SRKMIVNATLSNNHTGI 888
LL+L A + Y +D +++AL VL I+T+VP S ++ A + + GI
Sbjct: 599 LLQLISIACNWKTYYARNDTVRFALDVLAILTVVPKIQLQLAESVDVLDEAGSAVSTVGI 658
Query: 889 AVILDAANAVSSYVDPEIIQPALNVLINLVCPP 921
++IL A D EI + AL ++IN VC P
Sbjct: 659 SIILGVAEGEFFIHDAEIQKSALQIIINCVCGP 691
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 25/193 (12%)
Query: 1030 EQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILT 1089
E + V++NNGIKVLL LL I P D +RALAC+ L+GL+R T+ I++
Sbjct: 718 EHTLAKMWNVVQSNNGIKVLLSLLS--IKMPITDADQIRALACKALVGLSRSSTVRQIIS 775
Query: 1090 KLQVGK--KLSELIRDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAAT 1147
KL + ++ +L+++ Q ++ + + A ELI V SG+ L TD
Sbjct: 776 KLPLFSSCQIQQLMKEPVLQDKRSDH----VKFCKYAAELIERV--SGKP-LLIGTDV-- 826
Query: 1148 PTLRRIERAAIAAATPISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQL---------- 1197
+L R+++A + A + IS+ +ELLLLI HL + GL TA L +EA L
Sbjct: 827 -SLARLQKADVVAQSRISFPEKELLLLIRNHLISKGLGETATVLTREADLPMTAASHSSA 885
Query: 1198 -TPLPSLAAPSSL 1209
TP+ + A+P SL
Sbjct: 886 FTPVTAAASPVSL 898
>sp|Q9W2F2|DCAF1_DROME DDB1- and CUL4-associated factor-like 1 OS=Drosophila melanogaster
GN=CG10080 PE=1 SV=2
Length = 1544
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 196/410 (47%), Gaps = 40/410 (9%)
Query: 1418 ERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPK--RSLDAPSNVTARLGTR 1475
+RITL+++V +YL +QH C P+TT P L PH CP+PK R L + N+T+R
Sbjct: 1065 KRITLNTIVTEYLTNQHSLCNNPVTTCPQFDLYEPHKCPDPKPSRLLSSNYNLTSR---- 1120
Query: 1476 EFKSTYSGVHRNRRDRQFVYSRFRPWRTCR--DDAGALLTCITFLGDSSHIAVGSHTKEL 1533
T +G + +R DR++V++ F PWR+ R D TC G +I VG+ +
Sbjct: 1121 -HARTQAGFNTSRFDRRYVHTHFSPWRSIRSADYEDLEFTCCDLAG--KYIIVGTQQGDG 1177
Query: 1534 KIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS---SQDVHLWNASSIAGGPMH 1590
++F+ N H V ++++ +G+ L+++SS + LW+ +
Sbjct: 1178 RVFNMNDGVEQFFSNCHNFSVDAIKANRAGD--LVITSSFWRTPTSILWSIADDEFKLKL 1235
Query: 1591 SFEGCKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648
FS + L T + L+DI T A + T NL + A
Sbjct: 1236 RLPDVTYCEFSQTVQDRLLG-----TQNECATLFDINTGSKVASFTPTIPNLYTKNRA-- 1288
Query: 1649 QIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWDLRKFR 1708
+D ++L +G+LWD R+ +H+FD+F G FHP E+I N+EVWDLR F
Sbjct: 1289 --TLCRTDELILSDGVLWDVRSGKEIHKFDKFNQCISGVFHPNCLEIIANTEVWDLRTFH 1346
Query: 1709 LLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSD 1768
LL++VP LDQ TF+ + A L + + M +F +DA +YS
Sbjct: 1347 LLQTVPVLDQRNCTFSPMHVIYGASLGADRDHDMETTTYD-------TSFNVLDAYDYSS 1399
Query: 1769 IATIPVDRCVLDFATERTDSFVGLIT----MDDQEDMFSSARIYEIGRRR 1814
IATI V R + D + S + ++ + +++ + +IY +G ++
Sbjct: 1400 IATIDVKRNINDLSVSANGSLIAVVEDYSGYESKQETY--VKIYAVGVKK 1447
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 187/406 (46%), Gaps = 40/406 (9%)
Query: 529 FIPDVESLAQLREKYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAM 588
+IP + A + ++ L +LGEY E L + + L+ + +
Sbjct: 377 YIPLHPATADTSQMLIMRFLTSLGEYQEFLAMAFENNVMQLIFGYLENLDRRD-----TC 431
Query: 589 LLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRNNQTFFGLSSCLFTIGSLQGIMER 648
L +V+K + +L H+KFA F+ GG++ LL VPR + G+S ++ + + MER
Sbjct: 432 LAYEVLKYLASLLCHKKFALEFISHGGLELLLKVPRPSLATTGVSIAIYYLAYCEDAMER 491
Query: 649 VCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVFRAIIDAFDAQDGLQKLLGL 708
+C++ ++ +LV A+ +L D ++ +A +FF+ +F F+ I+D FDAQDGL+KL +
Sbjct: 492 ICSMQRPLISELVRYALWILGRCHDSSKCHATMFFSLSFQFKVILDEFDAQDGLRKLYNV 551
Query: 709 LNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVLTSSEKQIAYHTCVALRQYFRAHLLLL 768
+ SV ++ S ND E + + +Q+ H CVAL++Y AH
Sbjct: 552 I----SVLKILDP------SHNDSDNDSDFNEDVECASRQMVRHVCVALKRYMEAHFFYK 601
Query: 769 VDSI-------RPNKSNRSAGRNIPNVRAAYKPLDISNEAIDAVFLQLQKDRKLGPALVR 821
+S P S+ P V AA D N+ I LQ+ +R
Sbjct: 602 YNSFLCQTNAASPAPSSAHYFNQNPTV-AAKLTFDQLNDQIRT----LQEHTS-----IR 651
Query: 822 TRWPAVDRFLSLNGHITLLELCQAPP--VERYLHDLLQYALGVLHIVTLVPNSRKMIVNA 879
W VD+ + L G LL + V + ++ AL VL + ++P ++
Sbjct: 652 AHWQPVDQLMKLGGITMLLRIIAFSYDWVNSGRSETVRSALDVLSVCCIIPRVYVVLCER 711
Query: 880 TLSNNHT---GIAVILD-AANAVSSYVDPEIIQPALNVLINLVCPP 921
L + T G +L AA +SS D E+I+ AL VL + VC P
Sbjct: 712 LLMLDKTTTSGFCSVLGAAAGEISS--DAEVIKSALAVLCHCVCSP 755
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 95/173 (54%), Gaps = 13/173 (7%)
Query: 1030 EQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILT 1089
E+ + E+V +NNGI VLL L+Q + P DC+R +ACR L GLAR D + I++
Sbjct: 783 EELIERVWESVCSNNGIVVLLSLMQTK--GPITDADCIRGMACRALAGLARSDRVRQIVS 840
Query: 1090 KLQV--GKKLSELIRDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAAT 1147
KL + +L L+RD Q E +Q + A+EL+ V SG+ L +
Sbjct: 841 KLPLFASGQLQTLMRDPILQEKRAEHVIFQ----KYALELLERV--SGKTKPL--NNPLD 892
Query: 1148 PTLRRIERAAIAAATPISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQLTPL 1200
P+L + +A + A T I Y+ ++L LI EHL+++GL TA L +E L PL
Sbjct: 893 PSLSNMHKANVIAQTRIQYNKQQLYQLIFEHLESNGLSQTAQMLQREVGL-PL 944
>sp|Q21106|DCAF1_CAEEL DDB1- and CUL4-associated factor homolog 1 OS=Caenorhabditis elegans
GN=dcaf-1 PE=3 SV=5
Length = 1701
Score = 167 bits (423), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/401 (28%), Positives = 195/401 (48%), Gaps = 26/401 (6%)
Query: 1422 LDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKSTY 1481
L+S+V Y ++QH C P+TT PP SL + H CPE + N++ R +E +
Sbjct: 1002 LNSIVTDYFRNQHSTCKNPVTTCPPFSLFYQHKCPELSYQTNVVRNISLRTLDQELLRPH 1061
Query: 1482 SGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS 1541
V+ + + ++SRFR W+T D + T TF D H+ VG E+ + ++
Sbjct: 1062 ERVYSQWTNERTIFSRFRNWKTIHDHDES-YTKATFSVDDEHLIVGLFNGEVHWINVDTG 1120
Query: 1542 SPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVH-LWNASSIAGGPMHSFEGCKAARF 1600
H + +T ++ G L S+ S+ + LW A +H++ +F
Sbjct: 1121 LDEGHTNCHGSALTNIEPSKDGSMMLTSSAFSRPLSALWRLGE-ALQRVHTYREDSCVKF 1179
Query: 1601 SNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659
+N+ + D+ +YD +T + L+ LS + G + + FSP D ++
Sbjct: 1180 ANTT--MQRIVGTCRDKAT-VYDTETNHVLDTYLS----GIDGLQYEKNYASFSPDDKLI 1232
Query: 1660 LWNGILWD-RRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLD 1717
+G+LWD R+ + +H FD+ + G FHP G +++INSEV+D+R FR+L VP L+
Sbjct: 1233 FNDGLLWDVRKKNSAIHVFDRLSKITLFGTFHPHGTQIVINSEVYDIRTFRMLHHVPELN 1292
Query: 1718 QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRC 1777
+ ++FN+ G+++YA ++ VH +F++FRT + +YS + T R
Sbjct: 1293 RCQVSFNSTGNIMYAT-------EVTDVHCPDYDEKIFSSFRTFETRDYSALTTFEGRRP 1345
Query: 1778 VLDFATERTDSFVGLI-----TMDDQEDMFSSA-RIYEIGR 1812
V+D D + +I M D S+ +I EIGR
Sbjct: 1346 VIDLCASHQDQKMCVIEKVRPQMSDYMIQASTQLKIVEIGR 1386
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 25/246 (10%)
Query: 541 EKYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICAL 600
+++ +Q L GEY ++L +++ + E+SK L D +K + +L
Sbjct: 322 QRFILQYLAACGEYQDLLLQTFEGNALEILFDYIDL-----EKSKDVRLTFDALKYLTSL 376
Query: 601 AAHRKFAALFVDRGGMQKLLAVPRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQL 660
HRKFA FV++GG+ LL VP+ + G+ +CL+ I +ME +C + ++V +
Sbjct: 377 LVHRKFALEFVNKGGIPALLKVPKTSLASVGVVTCLYYIAYSNDVMEILCQMSDEIVDET 436
Query: 661 VELAIQLLECTQDQARKNAALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDAASVRSGVN 720
V+ + LE + + +A +FF+ ++AI+ FD DG +K L N A++ N
Sbjct: 437 VQYVLWCLEHSHESGMASACMFFSQGLFYKAILRRFDQYDGPRK---LHNYIATLTLMQN 493
Query: 721 AGAVGLSSSTSLRNDRSPPEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRS 780
V L+ ++ TS+ Q C R Y AH+ + V++ + +
Sbjct: 494 NEDVELTEE----------QIHTST--QCTRGVCTTFRSYLTAHIFIKVENYK-----KL 536
Query: 781 AGRNIP 786
G N+P
Sbjct: 537 YGNNLP 542
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 1040 VRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQV--GKKL 1097
VR +GI L++L+ +I P D +R A L GLAR + IL KL + L
Sbjct: 731 VRKTDGIMALVNLINCKI--PLTEADSIRKTATNTLTGLARHPEVRQILAKLPLIAHNGL 788
Query: 1098 SELIRDSGGQTPATEQGR-WQAELSQVAIELIAIV----TNSGRASTLAATDAATPTLRR 1152
L+R+ P R A + A++L+ ++ + + + +++ +
Sbjct: 789 QNLMRE-----PVCSDKRDIHAAFCKEAVQLLQVIYGRKIHDQQGKEIQSSEKS------ 837
Query: 1153 IERAAIAAATPISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQLTPLPS 1202
R + T +S++ ELL LIH+HL S L + AA L EA+L P+
Sbjct: 838 -HRQWVIENTQVSFNQAELLQLIHDHLLKSKLDSVAAMLKSEAKLPDRPA 886
>sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2)
GN=rep PE=3 SV=1
Length = 7152
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 22/166 (13%)
Query: 1766 YSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRRPTEDDSDPDDA 1825
Y A V+ + A E T V T++D ED+ + DD D
Sbjct: 915 YCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTG-----------DNDDEDVVTG 963
Query: 1826 ESDEEDEEDDDDVDVDPLLGADLDGD---GDSEGDDL---SNSDEDDSVSDLDDEDDGDF 1879
++D+ED D+ D D + G + D D GD++ +D+ N DED D DDED
Sbjct: 964 DNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTG 1023
Query: 1880 MMDDVDYDGGGGLLEIVTEGDEDEDSQLV-----ESLSSGDEEDFI 1920
DD D G E V GD D++ + E + +GD +D I
Sbjct: 1024 DNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEEIVTGDNDDQI 1069
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 1816 TEDDSDPDDAESDEEDEE----DDDDVDVDPLLGADLDGD---GDSEGDDL---SNSDED 1865
T D+ D D D +DE+ D+DD DV + G + D D GD++ +D+ N DED
Sbjct: 982 TGDNDDEDVVTGDNDDEDVVTGDNDDEDV--VTGDNDDEDVVTGDNDDEDVVTGDNDDED 1039
Query: 1866 DSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLV 1908
D DDED DD + G +IV GD+ +D + V
Sbjct: 1040 VVTGDNDDEDVVTGDNDDEEIVTGDNDDQIVVTGDDVDDIESV 1082
Score = 35.0 bits (79), Expect = 7.0, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 1816 TEDDSDPDDAESDEEDEE----DDDDVDVDPLLGADLDGD---GDSEGDDLSNSDEDDS- 1867
T D+ D D D +DE+ D+DD DV + G + D D GD++ +++ D DD
Sbjct: 1012 TGDNDDEDVVTGDNDDEDVVTGDNDDEDV--VTGDNDDEDVVTGDNDDEEIVTGDNDDQI 1069
Query: 1868 VSDLDDEDDGDFMMD 1882
V DD DD + + D
Sbjct: 1070 VVTGDDVDDIESVYD 1084
>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1)
GN=rep PE=3 SV=1
Length = 7182
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 22/159 (13%)
Query: 1766 YSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRRPTEDDSDPDDA 1825
Y A V+ + A E T V T++D ED+ + DD D
Sbjct: 915 YCTFAIEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTG-----------DNDDEDVVTG 963
Query: 1826 ESDEEDEEDDDDVDVDPLLGADLDGD---GDSEGDDL---SNSDEDDSVSDLDDEDDGDF 1879
++D+ED D+ D D + G + D D GD++ +D+ N DED D DDED
Sbjct: 964 DNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTG 1023
Query: 1880 MMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLSSGDEED 1918
DD D G E V GD D+ E + +GD +D
Sbjct: 1024 DNDDEDVVTGDNDDEDVVTGDNDD-----EDVVTGDNDD 1057
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 17/120 (14%)
Query: 1816 TEDDSDPDDAESDEEDEE----DDDDVDVDPLLGADLDGD---GDSEGDDL---SNSDED 1865
T D+ D D D +DE+ D+DD DV + G + D D GD++ +D+ N DED
Sbjct: 982 TGDNDDEDVVTGDNDDEDVVTGDNDDEDV--VTGDNDDEDVVTGDNDDEDVVTGDNDDED 1039
Query: 1866 DSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLV-----ESLSSGDEEDFI 1920
D DDED DD D G E V GD D++ + E + +GD +D I
Sbjct: 1040 VVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNNDEEIVTGDNDDQI 1099
>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5)
GN=rep PE=3 SV=1
Length = 7132
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 1795 MDDQEDMFSSARIYEI--GRRRPT-EDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGD 1851
++D ED+ SS + + G T DD D ++D+ED D+ D D + G + D D
Sbjct: 920 IEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDED 979
Query: 1852 ---GDSEGDDL---SNSDEDDSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVTEGDEDEDS 1905
GD++ +D+ N DED D DDED DD D G E V GD +++
Sbjct: 980 VVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNNDEDVVTGDNNDEE 1039
Query: 1906 QLVESLSSGDEEDFI 1920
+ +GD +D I
Sbjct: 1040 SV-----TGDNDDQI 1049
Score = 34.7 bits (78), Expect = 7.6, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 1816 TEDDSDPDDAESDEEDEE------DDDDVDVDPLLGADLDGD---GDSEGDDLSNSDEDD 1866
T D+ D D D +DE+ DD+DV + G + D D GD+ +D+ D +D
Sbjct: 982 TGDNDDEDVVTGDNDDEDVVTGDNDDEDV----VTGDNDDEDVVTGDNNDEDVVTGDNND 1037
Query: 1867 SVSDLDDEDDGDFMM-DDVD 1885
S D DD + DDVD
Sbjct: 1038 EESVTGDNDDQIVVTGDDVD 1057
>sp|A1ZA92|NOL9_DROME Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Drosophila melanogaster
GN=CG8414 PE=2 SV=1
Length = 995
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 1804 SARIYEIGRRRPTEDDSDPDDAESDEED-------EEDDDDVDVDPLLGADLDGDGD--- 1853
+ R ++ + E DSD DD + + ED E D ++ D + AD D DGD
Sbjct: 267 TVRKIKVFKSAQEETDSDEDDIDYEPEDSDDFGSEEFDSEESDSEDTSSADYDSDGDFYS 326
Query: 1854 --SEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVDYDG 1888
S+ +D+S+SD ++ SD+ D DD D + D +G
Sbjct: 327 EYSDMEDVSDSDSEEFGSDIFDTDDLDSTYEPPDIEG 363
>sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N2) GN=1a
PE=3 SV=1
Length = 4441
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 1817 EDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGD---GDSEGDDL---SNSDEDDSVSD 1870
DD D ++D+ED D+ D D + G + D D GD++ +D+ N DED D
Sbjct: 955 NDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGD 1014
Query: 1871 LDDED--DGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLSSGDEED 1918
DDED GD DD D G E V GD D+ E + +GD +D
Sbjct: 1015 NDDEDVVTGD--NDDEDVVTGDNDDEDVVTGDNDD-----EDVVTGDNDD 1057
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 62/136 (45%), Gaps = 30/136 (22%)
Query: 1795 MDDQEDMFSSARIYEI--GRRRPTEDDSDPDDAESDEEDEE----DDDDVDVDPLLGADL 1848
++D ED+ SS + + G T +D D D D +DE+ D+DD DV +
Sbjct: 920 IEDVEDVISSEAVEDTIDGVVEDTIND-DEDVVTGDNDDEDVVTGDNDDEDV-------V 971
Query: 1849 DGDGDSE----GDDLSNSDEDDSVSDLDDED--DGDFMMDDVDYDGGGGLLEIVTEGDED 1902
GD D E GD N DED D DDED GD DD D G E V GD D
Sbjct: 972 TGDNDDEDVVTGD---NDDEDVVTGDNDDEDVVTGD--NDDEDVVTGDNDDEDVVTGDND 1026
Query: 1903 EDSQLVESLSSGDEED 1918
+ E + +GD +D
Sbjct: 1027 D-----EDVVTGDNDD 1037
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 13/107 (12%)
Query: 1817 EDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGD---GDSEGDDL---SNSDEDDSVSD 1870
DD D ++D+ED D+ D D + G + D D GD++ +D+ N DED D
Sbjct: 985 NDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGD 1044
Query: 1871 LDDED--DGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLSSGD 1915
DDED GD DD + G +IV GD+ +D +ES+ D
Sbjct: 1045 NDDEDVVTGD--NDDEEIVTGDNDDQIVVTGDDVDD---IESVYDFD 1086
>sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N1) GN=1a
PE=1 SV=1
Length = 4471
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 1817 EDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGD---GDSEGDDL---SNSDEDDSVSD 1870
DD D ++D+ED D+ D D + G + D D GD++ +D+ N DED D
Sbjct: 955 NDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGD 1014
Query: 1871 LDDED--DGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLSSGDEED 1918
DDED GD DD D G E V GD D+ E + +GD +D
Sbjct: 1015 NDDEDVVTGD--NDDEDVVTGDNDDEDVVTGDNDD-----EDVVTGDNDD 1057
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 1817 EDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGD---GDSEGDDL---SNSDEDDSVSD 1870
DD D ++D+ED D+ D D + G + D D GD++ +D+ N DED D
Sbjct: 985 NDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGD 1044
Query: 1871 LDDED--DGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLV-----ESLSSGDEED 1918
DDED GD DD D G E V GD D++ + E + +GD +D
Sbjct: 1045 NDDEDVVTGD--NDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNNDEEIVTGDNDD 1097
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 62/136 (45%), Gaps = 30/136 (22%)
Query: 1795 MDDQEDMFSSARIYEI--GRRRPTEDDSDPDDAESDEEDEE----DDDDVDVDPLLGADL 1848
++D ED+ SS + + G T +D D D D +DE+ D+DD DV +
Sbjct: 920 IEDVEDVISSEAVEDTIDGVVEDTIND-DEDVVTGDNDDEDVVTGDNDDEDV-------V 971
Query: 1849 DGDGDSE----GDDLSNSDEDDSVSDLDDED--DGDFMMDDVDYDGGGGLLEIVTEGDED 1902
GD D E GD N DED D DDED GD DD D G E V GD D
Sbjct: 972 TGDNDDEDVVTGD---NDDEDVVTGDNDDEDVVTGD--NDDEDVVTGDNDDEDVVTGDND 1026
Query: 1903 EDSQLVESLSSGDEED 1918
+ E + +GD +D
Sbjct: 1027 D-----EDVVTGDNDD 1037
>sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N5) GN=1a
PE=3 SV=1
Length = 4421
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 1795 MDDQEDMFSSARIYEI--GRRRPT-EDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGD 1851
++D ED+ SS + + G T DD D ++D+ED D+ D D + G + D D
Sbjct: 920 IEDVEDVISSEAVEDTIDGVVEDTINDDEDVVTGDNDDEDVVTGDNDDEDVVTGDNDDED 979
Query: 1852 ---GDSEGDDL---SNSDEDDSVSDLDDED--DGDFMMDDVDYDGGGGLLEIVTEGDEDE 1903
GD++ +D+ N DED D DDED GD DD D G E V GD ++
Sbjct: 980 VVTGDNDDEDVVTGDNDDEDVVTGDNDDEDVVTGD--NDDEDVVTGDNNDEDVVTGDNND 1037
Query: 1904 DSQLVESLSSGDEED 1918
+ + +GD +D
Sbjct: 1038 EESV-----TGDNDD 1047
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 703,628,161
Number of Sequences: 539616
Number of extensions: 31389199
Number of successful extensions: 178705
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 870
Number of HSP's that attempted gapping in prelim test: 139791
Number of HSP's gapped (non-prelim): 15493
length of query: 1922
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1790
effective length of database: 120,340,147
effective search space: 215408863130
effective search space used: 215408863130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 69 (31.2 bits)