Query 000177
Match_columns 1922
No_of_seqs 781 out of 4299
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 22:05:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1832 HIV-1 Vpr-binding prot 100.0 2E-284 5E-289 2509.0 66.2 1398 118-1834 1-1421(1516)
2 KOG0272 U4/U6 small nuclear ri 100.0 4.8E-32 1E-36 315.5 23.0 259 1510-1809 176-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.1E-29 2.5E-34 292.1 24.2 281 1490-1809 139-479 (480)
4 KOG0271 Notchless-like WD40 re 100.0 3.4E-29 7.3E-34 288.2 24.6 279 1498-1819 105-447 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-28 4.8E-33 285.1 20.1 238 1481-1737 192-452 (459)
6 KOG0293 WD40 repeat-containing 100.0 4.8E-28 1.1E-32 280.6 21.7 339 1382-1813 152-515 (519)
7 KOG0286 G-protein beta subunit 100.0 5.3E-26 1.1E-30 256.1 31.9 272 1497-1809 44-343 (343)
8 KOG0279 G protein beta subunit 99.9 2.8E-25 6E-30 249.4 28.4 270 1501-1812 8-314 (315)
9 KOG0279 G protein beta subunit 99.9 3E-25 6.5E-30 249.1 23.2 228 1495-1738 50-306 (315)
10 KOG0284 Polyadenylation factor 99.9 5E-25 1.1E-29 256.2 22.3 266 1510-1814 97-383 (464)
11 cd00200 WD40 WD40 domain, foun 99.9 8.7E-23 1.9E-27 225.5 34.1 269 1501-1809 2-289 (289)
12 KOG0263 Transcription initiati 99.9 2E-24 4.3E-29 267.6 22.9 192 1498-1706 441-650 (707)
13 KOG0285 Pleiotropic regulator 99.9 6E-24 1.3E-28 243.6 23.9 274 1496-1809 139-437 (460)
14 KOG0263 Transcription initiati 99.9 3.9E-24 8.5E-29 265.0 22.0 218 1510-1741 379-645 (707)
15 KOG0266 WD40 repeat-containing 99.9 5.4E-23 1.2E-27 256.6 31.4 272 1501-1810 151-453 (456)
16 KOG0295 WD40 repeat-containing 99.9 2.9E-23 6.4E-28 239.3 23.6 274 1495-1809 95-404 (406)
17 KOG0265 U5 snRNP-specific prot 99.9 1E-22 2.2E-27 230.6 25.8 260 1500-1794 39-327 (338)
18 KOG0291 WD40-repeat-containing 99.9 4.2E-22 9.1E-27 244.1 31.6 229 1492-1734 291-539 (893)
19 KOG0286 G-protein beta subunit 99.9 2E-22 4.4E-27 227.4 26.1 220 1500-1734 89-334 (343)
20 KOG0273 Beta-transducin family 99.9 2.6E-22 5.7E-27 236.9 27.7 248 1510-1794 236-512 (524)
21 KOG0315 G-protein beta subunit 99.9 1.3E-21 2.8E-26 217.0 28.3 226 1496-1736 28-279 (311)
22 KOG0282 mRNA splicing factor [ 99.9 4.9E-23 1.1E-27 244.0 15.2 271 1497-1809 203-503 (503)
23 KOG0266 WD40 repeat-containing 99.9 8.9E-22 1.9E-26 245.7 26.5 221 1500-1734 195-441 (456)
24 KOG0273 Beta-transducin family 99.9 2.3E-21 4.9E-26 229.1 24.4 238 1479-1736 250-514 (524)
25 KOG0265 U5 snRNP-specific prot 99.9 2.1E-21 4.4E-26 220.2 23.1 238 1480-1735 63-328 (338)
26 PLN00181 protein SPA1-RELATED; 99.9 2.6E-20 5.5E-25 247.0 37.5 275 1504-1810 479-792 (793)
27 KOG0284 Polyadenylation factor 99.9 1.2E-22 2.7E-27 236.4 13.3 223 1502-1742 132-377 (464)
28 KOG0315 G-protein beta subunit 99.9 9.6E-21 2.1E-25 210.2 26.2 253 1522-1812 11-289 (311)
29 KOG0295 WD40 repeat-containing 99.9 1.9E-21 4.1E-26 224.5 21.0 229 1491-1734 133-395 (406)
30 KOG1407 WD40 repeat protein [F 99.9 7.6E-21 1.7E-25 212.2 24.7 273 1502-1809 14-309 (313)
31 KOG0292 Vesicle coat complex C 99.9 5.9E-21 1.3E-25 236.0 26.1 291 1493-1793 36-383 (1202)
32 cd00200 WD40 WD40 domain, foun 99.9 6.5E-20 1.4E-24 202.7 29.3 226 1495-1735 38-281 (289)
33 KOG0292 Vesicle coat complex C 99.9 1.4E-20 3.1E-25 232.7 25.7 255 1505-1793 6-310 (1202)
34 KOG0291 WD40-repeat-containing 99.9 9.4E-20 2E-24 223.8 31.9 265 1504-1810 261-549 (893)
35 KOG0640 mRNA cleavage stimulat 99.9 2.2E-20 4.7E-25 211.4 24.1 272 1502-1809 106-424 (430)
36 KOG0643 Translation initiation 99.9 1.7E-20 3.6E-25 209.9 22.5 285 1504-1811 6-317 (327)
37 KOG0276 Vesicle coat complex C 99.9 2.7E-20 5.8E-25 224.6 25.1 228 1493-1734 40-288 (794)
38 KOG0645 WD40 repeat protein [G 99.9 4.9E-20 1.1E-24 206.9 25.5 272 1499-1811 5-311 (312)
39 KOG0276 Vesicle coat complex C 99.9 2.2E-20 4.9E-25 225.3 24.0 259 1501-1793 6-287 (794)
40 KOG1832 HIV-1 Vpr-binding prot 99.9 4E-21 8.7E-26 235.8 16.1 176 1542-1733 1092-1284(1516)
41 PTZ00421 coronin; Provisional 99.8 1.3E-19 2.8E-24 227.6 28.2 207 1503-1726 70-314 (493)
42 KOG0275 Conserved WD40 repeat- 99.8 1.6E-20 3.5E-25 212.6 16.3 303 1416-1735 154-499 (508)
43 KOG0283 WD40 repeat-containing 99.8 3E-20 6.4E-25 232.6 19.6 234 1495-1745 253-575 (712)
44 KOG0316 Conserved WD40 repeat- 99.8 1.3E-19 2.8E-24 199.8 22.2 250 1501-1788 10-283 (307)
45 KOG0293 WD40 repeat-containing 99.8 4.2E-20 9E-25 215.3 18.9 222 1497-1735 258-502 (519)
46 KOG0296 Angio-associated migra 99.8 8.3E-19 1.8E-23 203.1 29.3 268 1500-1811 56-398 (399)
47 KOG0282 mRNA splicing factor [ 99.8 2.2E-20 4.9E-25 221.7 15.8 239 1479-1733 230-492 (503)
48 KOG0318 WD40 repeat stress pro 99.8 1.6E-18 3.5E-23 207.1 31.4 279 1495-1814 177-563 (603)
49 KOG0275 Conserved WD40 repeat- 99.8 6.1E-20 1.3E-24 207.9 16.1 258 1510-1809 214-507 (508)
50 KOG0306 WD40-repeat-containing 99.8 6.1E-19 1.3E-23 216.7 24.8 271 1503-1812 368-665 (888)
51 KOG0319 WD40-repeat-containing 99.8 1.2E-19 2.6E-24 223.3 18.5 219 1502-1735 359-609 (775)
52 KOG0310 Conserved WD40 repeat- 99.8 4.9E-19 1.1E-23 210.9 22.6 252 1449-1736 29-300 (487)
53 KOG0973 Histone transcription 99.8 1.5E-18 3.2E-23 221.8 26.1 259 1505-1796 9-346 (942)
54 KOG1446 Histone H3 (Lys4) meth 99.8 1.6E-17 3.4E-22 190.6 31.3 262 1496-1792 2-292 (311)
55 KOG1273 WD40 repeat protein [G 99.8 1E-18 2.2E-23 198.8 21.3 265 1512-1812 26-323 (405)
56 KOG0296 Angio-associated migra 99.8 3.8E-18 8.2E-23 197.7 26.0 245 1481-1737 81-390 (399)
57 KOG0319 WD40-repeat-containing 99.8 1.6E-18 3.5E-23 213.4 23.9 280 1496-1809 311-617 (775)
58 KOG0278 Serine/threonine kinas 99.8 6.6E-19 1.4E-23 195.4 18.6 273 1502-1815 8-301 (334)
59 KOG0316 Conserved WD40 repeat- 99.8 1.2E-18 2.6E-23 192.3 20.4 227 1490-1733 41-288 (307)
60 KOG0772 Uncharacterized conser 99.8 1.8E-18 3.9E-23 205.9 23.2 269 1502-1794 161-476 (641)
61 KOG0973 Histone transcription 99.8 2E-18 4.4E-23 220.5 24.1 230 1499-1737 60-347 (942)
62 PLN00181 protein SPA1-RELATED; 99.8 1.3E-17 2.7E-22 221.5 31.3 209 1510-1735 533-783 (793)
63 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 9.2E-17 2E-21 184.4 34.2 255 1521-1813 1-281 (300)
64 PTZ00420 coronin; Provisional 99.8 1.3E-17 2.8E-22 211.4 29.6 214 1496-1727 62-318 (568)
65 KOG0643 Translation initiation 99.8 1.7E-18 3.7E-23 194.1 18.3 227 1495-1734 38-306 (327)
66 KOG0268 Sof1-like rRNA process 99.8 5.7E-19 1.2E-23 203.8 14.6 265 1502-1810 60-344 (433)
67 PTZ00421 coronin; Provisional 99.8 2.8E-17 6E-22 206.8 30.1 213 1510-1734 21-278 (493)
68 KOG0278 Serine/threonine kinas 99.8 4.7E-19 1E-23 196.6 12.5 225 1497-1737 48-289 (334)
69 KOG1274 WD40 repeat protein [G 99.8 5.6E-17 1.2E-21 203.7 31.7 251 1506-1794 11-289 (933)
70 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.7E-16 3.6E-21 182.3 33.3 255 1495-1785 18-300 (300)
71 KOG0306 WD40-repeat-containing 99.8 4.6E-18 9.9E-23 209.1 21.1 228 1492-1736 398-655 (888)
72 KOG0281 Beta-TrCP (transducin 99.8 7.4E-19 1.6E-23 201.1 13.1 200 1510-1734 198-417 (499)
73 KOG0288 WD40 repeat protein Ti 99.8 2.1E-18 4.6E-23 201.9 16.7 262 1504-1808 171-458 (459)
74 KOG0274 Cdc4 and related F-box 99.8 2.4E-17 5.2E-22 208.2 26.6 268 1501-1814 200-485 (537)
75 KOG0305 Anaphase promoting com 99.8 2.3E-17 5E-22 202.9 25.2 212 1507-1737 216-453 (484)
76 KOG0285 Pleiotropic regulator 99.8 9.3E-18 2E-22 193.3 19.7 226 1491-1734 176-428 (460)
77 KOG0288 WD40 repeat protein Ti 99.8 3.2E-18 6.9E-23 200.4 16.1 237 1481-1735 192-451 (459)
78 KOG0281 Beta-TrCP (transducin 99.8 1.8E-18 4E-23 197.9 12.7 191 1495-1708 224-431 (499)
79 KOG0310 Conserved WD40 repeat- 99.8 2.7E-17 5.9E-22 196.2 23.0 252 1503-1793 22-297 (487)
80 KOG0289 mRNA splicing factor [ 99.8 5.9E-17 1.3E-21 190.6 25.0 262 1511-1809 221-504 (506)
81 KOG0289 mRNA splicing factor [ 99.8 3.8E-17 8.3E-22 192.1 22.9 226 1492-1734 245-495 (506)
82 KOG0274 Cdc4 and related F-box 99.8 4.4E-17 9.5E-22 205.9 25.0 218 1493-1734 233-471 (537)
83 KOG0313 Microtubule binding pr 99.8 7.1E-17 1.5E-21 187.8 24.3 224 1495-1734 131-407 (423)
84 KOG0318 WD40 repeat stress pro 99.8 3.5E-16 7.7E-21 187.4 30.3 309 1483-1811 122-473 (603)
85 PTZ00420 coronin; Provisional 99.8 2.9E-16 6.2E-21 199.2 30.8 199 1526-1737 49-285 (568)
86 KOG0267 Microtubule severing p 99.7 1.9E-18 4.2E-23 211.9 9.1 217 1502-1735 22-258 (825)
87 KOG1407 WD40 repeat protein [F 99.7 1.3E-16 2.9E-21 178.7 22.1 230 1489-1736 45-293 (313)
88 KOG0313 Microtubule binding pr 99.7 2.9E-16 6.4E-21 182.8 24.6 270 1506-1809 103-416 (423)
89 KOG2096 WD40 repeat protein [G 99.7 5.3E-16 1.1E-20 177.1 25.4 259 1501-1793 79-391 (420)
90 KOG0640 mRNA cleavage stimulat 99.7 2.8E-17 6.2E-22 186.5 15.1 223 1499-1734 163-415 (430)
91 KOG0305 Anaphase promoting com 99.7 4.4E-16 9.5E-21 191.8 26.7 257 1513-1811 181-461 (484)
92 KOG0294 WD40 repeat-containing 99.7 3.2E-16 7E-21 179.2 23.6 222 1497-1737 32-273 (362)
93 KOG0641 WD40 repeat protein [G 99.7 5.4E-16 1.2E-20 170.0 23.3 221 1505-1733 86-337 (350)
94 KOG1446 Histone H3 (Lys4) meth 99.7 1E-15 2.2E-20 175.9 25.7 227 1494-1733 42-293 (311)
95 KOG0308 Conserved WD40 repeat- 99.7 1.1E-16 2.4E-21 195.1 17.8 218 1514-1736 29-276 (735)
96 KOG0772 Uncharacterized conser 99.7 2.3E-16 5.1E-21 188.1 18.7 229 1498-1737 206-479 (641)
97 KOG0283 WD40 repeat-containing 99.7 2.4E-16 5.3E-21 198.0 18.1 201 1498-1708 359-579 (712)
98 KOG0277 Peroxisomal targeting 99.7 5.7E-16 1.2E-20 173.1 18.9 210 1510-1733 61-297 (311)
99 KOG2055 WD40 repeat protein [G 99.7 1.1E-15 2.4E-20 181.3 21.6 269 1510-1810 214-511 (514)
100 KOG0300 WD40 repeat-containing 99.7 9E-16 2E-20 174.4 19.6 273 1497-1814 137-431 (481)
101 KOG0645 WD40 repeat protein [G 99.7 2.9E-15 6.3E-20 168.9 22.6 217 1498-1736 50-302 (312)
102 KOG0267 Microtubule severing p 99.7 5.9E-17 1.3E-21 199.1 9.1 189 1495-1700 57-258 (825)
103 KOG0641 WD40 repeat protein [G 99.7 5.7E-14 1.2E-18 154.3 30.1 275 1496-1810 21-348 (350)
104 KOG0639 Transducin-like enhanc 99.7 1.7E-15 3.6E-20 179.9 19.3 270 1499-1810 411-703 (705)
105 KOG0647 mRNA export protein (c 99.7 1.1E-14 2.3E-19 166.3 23.4 252 1510-1798 28-317 (347)
106 KOG0277 Peroxisomal targeting 99.6 1.2E-15 2.5E-20 170.7 12.9 187 1498-1699 94-298 (311)
107 KOG1273 WD40 repeat protein [G 99.6 7.7E-15 1.7E-19 167.6 19.1 227 1492-1733 49-311 (405)
108 KOG0639 Transducin-like enhanc 99.6 3.7E-15 8E-20 177.0 15.5 213 1510-1737 466-696 (705)
109 KOG0308 Conserved WD40 repeat- 99.6 4.6E-15 9.9E-20 181.3 15.7 185 1501-1700 66-275 (735)
110 KOG0299 U3 snoRNP-associated p 99.6 5.1E-14 1.1E-18 167.6 23.8 254 1502-1793 136-443 (479)
111 KOG0301 Phospholipase A2-activ 99.6 5.8E-14 1.3E-18 172.9 24.9 270 1498-1818 4-295 (745)
112 KOG1063 RNA polymerase II elon 99.6 2E-14 4.3E-19 176.8 20.7 286 1496-1813 179-650 (764)
113 KOG0650 WD40 repeat nucleolar 99.6 3.9E-14 8.4E-19 171.7 21.9 286 1502-1808 394-732 (733)
114 KOG1274 WD40 repeat protein [G 99.6 9E-14 2E-18 175.5 25.8 215 1507-1733 55-288 (933)
115 KOG0299 U3 snoRNP-associated p 99.6 4.6E-14 9.9E-19 168.0 21.8 221 1498-1735 191-445 (479)
116 KOG0647 mRNA export protein (c 99.6 1.1E-13 2.4E-18 158.1 23.6 222 1502-1735 66-313 (347)
117 KOG4227 WD40 repeat protein [G 99.6 1.1E-13 2.4E-18 160.6 22.2 118 1503-1628 51-182 (609)
118 KOG0264 Nucleosome remodeling 99.6 6.7E-14 1.4E-18 166.8 20.1 218 1506-1734 122-392 (422)
119 KOG1332 Vesicle coat complex C 99.6 2.6E-14 5.6E-19 159.4 14.3 222 1505-1737 8-278 (299)
120 KOG1539 WD repeat protein [Gen 99.6 7.7E-13 1.7E-17 165.6 28.8 271 1493-1796 187-638 (910)
121 KOG0301 Phospholipase A2-activ 99.6 1.5E-13 3.3E-18 169.3 21.9 211 1498-1733 47-277 (745)
122 KOG0300 WD40 repeat-containing 99.5 9.6E-14 2.1E-18 158.1 17.2 214 1495-1726 177-455 (481)
123 KOG1036 Mitotic spindle checkp 99.5 6.2E-13 1.3E-17 152.8 23.6 250 1510-1794 14-293 (323)
124 KOG4283 Transcription-coupled 99.5 6.6E-13 1.4E-17 150.9 23.5 269 1505-1810 40-364 (397)
125 KOG2055 WD40 repeat protein [G 99.5 2.1E-13 4.6E-18 162.2 20.2 240 1480-1733 229-500 (514)
126 KOG0646 WD40 repeat protein [G 99.5 9.9E-14 2.1E-18 165.5 17.4 211 1510-1733 82-337 (476)
127 KOG0294 WD40 repeat-containing 99.5 2.8E-13 6.1E-18 155.5 20.4 201 1491-1707 66-283 (362)
128 KOG0268 Sof1-like rRNA process 99.5 5.7E-14 1.2E-18 163.1 13.7 233 1482-1737 85-337 (433)
129 KOG0269 WD40 repeat-containing 99.5 4.9E-14 1.1E-18 175.1 13.7 180 1497-1690 122-319 (839)
130 KOG2919 Guanine nucleotide-bin 99.5 1.3E-12 2.8E-17 150.2 22.7 257 1512-1793 52-358 (406)
131 KOG0264 Nucleosome remodeling 99.5 3.1E-13 6.6E-18 161.3 17.8 194 1497-1705 166-404 (422)
132 KOG0269 WD40 repeat-containing 99.5 1.6E-13 3.4E-18 170.6 15.0 198 1512-1725 90-319 (839)
133 KOG1009 Chromatin assembly com 99.5 1.2E-12 2.6E-17 154.3 20.6 272 1507-1794 11-361 (434)
134 KOG4328 WD40 protein [Function 99.5 1.6E-12 3.4E-17 154.9 20.8 233 1494-1735 172-484 (498)
135 KOG2106 Uncharacterized conser 99.5 1.2E-11 2.7E-16 148.2 27.6 256 1499-1793 236-509 (626)
136 KOG0307 Vesicle coat complex C 99.5 1.3E-13 2.8E-18 177.8 10.8 217 1510-1737 65-319 (1049)
137 KOG1539 WD repeat protein [Gen 99.5 2.4E-12 5.1E-17 161.3 21.5 176 1510-1699 449-636 (910)
138 KOG0303 Actin-binding protein 99.5 1.4E-12 3.1E-17 152.8 18.1 209 1503-1726 76-320 (472)
139 KOG0646 WD40 repeat protein [G 99.4 1.1E-12 2.5E-17 156.6 17.1 201 1481-1690 98-329 (476)
140 KOG1408 WD40 repeat protein [F 99.4 1.1E-12 2.3E-17 160.8 15.9 221 1510-1737 460-705 (1080)
141 KOG2445 Nuclear pore complex c 99.4 8.9E-12 1.9E-16 143.0 21.8 228 1505-1737 10-310 (361)
142 COG2319 FOG: WD40 repeat [Gene 99.4 3.8E-10 8.3E-15 130.1 35.1 275 1498-1812 145-443 (466)
143 KOG0644 Uncharacterized conser 99.4 3.1E-13 6.7E-18 168.1 9.6 295 1420-1733 105-456 (1113)
144 KOG4378 Nuclear protein COP1 [ 99.4 3.7E-12 8E-17 152.0 17.6 203 1511-1731 84-308 (673)
145 KOG1332 Vesicle coat complex C 99.4 3.9E-12 8.4E-17 142.3 16.4 188 1499-1699 47-275 (299)
146 KOG4378 Nuclear protein COP1 [ 99.4 4.3E-12 9.2E-17 151.5 17.0 195 1480-1692 95-305 (673)
147 KOG1009 Chromatin assembly com 99.4 5.6E-12 1.2E-16 148.8 17.9 226 1501-1734 58-361 (434)
148 KOG2096 WD40 repeat protein [G 99.4 1.1E-11 2.4E-16 142.3 19.5 242 1545-1810 80-359 (420)
149 KOG1036 Mitotic spindle checkp 99.4 2.1E-11 4.6E-16 140.3 21.4 215 1506-1735 52-294 (323)
150 COG2319 FOG: WD40 repeat [Gene 99.4 2E-09 4.4E-14 124.1 35.9 218 1500-1733 100-346 (466)
151 KOG0302 Ribosome Assembly prot 99.4 1.5E-11 3.2E-16 144.0 17.8 189 1506-1706 149-379 (440)
152 PRK01742 tolB translocation pr 99.4 3E-11 6.4E-16 150.6 21.9 193 1529-1736 182-392 (429)
153 KOG2048 WD40 repeat protein [G 99.4 2.3E-10 5E-15 141.8 28.7 237 1486-1733 47-307 (691)
154 PRK11028 6-phosphogluconolacto 99.4 5E-10 1.1E-14 134.2 31.2 252 1525-1811 6-304 (330)
155 KOG1063 RNA polymerase II elon 99.3 7.6E-11 1.6E-15 145.9 23.7 262 1504-1786 263-675 (764)
156 KOG2919 Guanine nucleotide-bin 99.3 4.7E-11 1E-15 137.6 19.4 211 1510-1734 105-359 (406)
157 KOG0321 WD40 repeat-containing 99.3 3.4E-11 7.5E-16 147.8 19.3 221 1502-1727 94-372 (720)
158 KOG0642 Cell-cycle nuclear pro 99.3 9.5E-12 2.1E-16 151.4 14.2 226 1498-1737 284-553 (577)
159 PRK01742 tolB translocation pr 99.3 7.1E-11 1.5E-15 147.2 22.3 204 1501-1726 196-426 (429)
160 KOG0270 WD40 repeat-containing 99.3 3.7E-11 7.9E-16 143.2 18.4 197 1520-1734 191-437 (463)
161 KOG0642 Cell-cycle nuclear pro 99.3 1.6E-11 3.5E-16 149.5 15.3 212 1496-1716 332-572 (577)
162 KOG0302 Ribosome Assembly prot 99.3 2.5E-11 5.5E-16 142.1 15.7 163 1495-1670 198-379 (440)
163 KOG0270 WD40 repeat-containing 99.3 4.7E-11 1E-15 142.4 17.8 193 1505-1710 240-454 (463)
164 PRK11028 6-phosphogluconolacto 99.3 1.1E-09 2.5E-14 131.1 29.7 227 1499-1734 26-292 (330)
165 KOG2106 Uncharacterized conser 99.3 1.5E-09 3.2E-14 130.8 29.8 294 1502-1811 98-477 (626)
166 KOG1538 Uncharacterized conser 99.3 6.3E-11 1.4E-15 144.6 18.5 226 1493-1737 38-285 (1081)
167 KOG1408 WD40 repeat protein [F 99.3 2.9E-11 6.2E-16 148.6 15.3 204 1490-1705 483-713 (1080)
168 KOG2048 WD40 repeat protein [G 99.3 3.3E-10 7.1E-15 140.4 24.1 211 1510-1733 26-263 (691)
169 KOG0321 WD40 repeat-containing 99.3 1.9E-10 4.2E-15 141.4 20.8 215 1514-1735 54-337 (720)
170 KOG1310 WD40 repeat protein [G 99.3 4.1E-11 8.9E-16 144.5 14.5 210 1497-1710 39-308 (758)
171 KOG0649 WD40 repeat protein [G 99.3 7E-10 1.5E-14 124.3 23.0 199 1511-1725 12-256 (325)
172 KOG4283 Transcription-coupled 99.2 2.3E-10 4.9E-15 130.7 18.8 217 1505-1733 98-353 (397)
173 PRK03629 tolB translocation pr 99.2 1.4E-09 3E-14 135.9 27.0 193 1530-1735 178-393 (429)
174 PRK03629 tolB translocation pr 99.2 1.5E-09 3.3E-14 135.5 26.5 208 1502-1725 192-427 (429)
175 PRK04922 tolB translocation pr 99.2 1.2E-09 2.6E-14 136.4 25.2 192 1531-1734 184-397 (433)
176 KOG0307 Vesicle coat complex C 99.2 3.5E-11 7.7E-16 155.7 10.8 195 1498-1706 106-328 (1049)
177 KOG1334 WD40 repeat protein [G 99.2 1.6E-10 3.5E-15 138.8 15.5 285 1495-1810 129-465 (559)
178 KOG1007 WD repeat protein TSSC 99.2 3.1E-10 6.8E-15 129.5 17.0 226 1502-1742 57-357 (370)
179 KOG1034 Transcriptional repres 99.2 3.3E-10 7.2E-15 131.2 16.4 218 1507-1734 88-372 (385)
180 KOG4328 WD40 protein [Function 99.2 3.1E-10 6.7E-15 135.8 16.3 210 1482-1699 206-483 (498)
181 KOG4497 Uncharacterized conser 99.2 2.6E-10 5.5E-15 131.7 14.6 203 1514-1736 13-231 (447)
182 PRK05137 tolB translocation pr 99.2 4.5E-09 9.9E-14 131.3 26.7 190 1530-1734 181-395 (435)
183 PRK04922 tolB translocation pr 99.1 2.2E-09 4.7E-14 134.2 22.7 208 1501-1725 196-432 (433)
184 KOG1538 Uncharacterized conser 99.1 1.6E-09 3.5E-14 132.7 20.3 248 1511-1797 14-285 (1081)
185 PF02239 Cytochrom_D1: Cytochr 99.1 4E-08 8.7E-13 120.8 32.6 283 1493-1810 21-346 (369)
186 PRK02889 tolB translocation pr 99.1 5.1E-09 1.1E-13 130.7 24.9 189 1531-1735 176-390 (427)
187 KOG1524 WD40 repeat-containing 99.1 1.1E-09 2.4E-14 132.2 17.8 240 1507-1794 13-275 (737)
188 PF08662 eIF2A: Eukaryotic tra 99.1 2.3E-09 4.9E-14 120.6 18.6 136 1514-1663 10-162 (194)
189 PRK02889 tolB translocation pr 99.1 5.7E-09 1.2E-13 130.3 24.1 184 1500-1699 187-389 (427)
190 KOG1034 Transcriptional repres 99.1 5.1E-10 1.1E-14 129.7 13.2 207 1490-1704 117-380 (385)
191 PRK05137 tolB translocation pr 99.1 9.1E-09 2E-13 128.6 25.3 186 1498-1699 191-395 (435)
192 KOG0771 Prolactin regulatory e 99.1 6.9E-10 1.5E-14 132.4 13.6 87 1513-1604 148-241 (398)
193 KOG0303 Actin-binding protein 99.1 4.6E-09 9.9E-14 124.1 19.9 195 1596-1812 85-295 (472)
194 KOG2139 WD40 repeat protein [G 99.0 2E-08 4.4E-13 117.8 23.1 215 1510-1737 99-367 (445)
195 PRK00178 tolB translocation pr 99.0 5E-08 1.1E-12 121.6 26.5 192 1532-1735 180-393 (430)
196 KOG1445 Tumor-specific antigen 99.0 1.1E-09 2.4E-14 133.6 11.4 177 1510-1699 628-832 (1012)
197 KOG1524 WD40 repeat-containing 99.0 1.9E-09 4.2E-14 130.2 12.8 177 1497-1699 93-275 (737)
198 KOG2110 Uncharacterized conser 99.0 3.5E-08 7.5E-13 116.5 22.6 209 1510-1737 6-240 (391)
199 KOG1963 WD40 repeat protein [G 99.0 6.8E-08 1.5E-12 123.5 26.6 275 1506-1812 203-539 (792)
200 KOG1587 Cytoplasmic dynein int 99.0 2.2E-08 4.8E-13 127.3 22.1 230 1498-1734 233-505 (555)
201 KOG1007 WD repeat protein TSSC 99.0 7.2E-09 1.6E-13 118.6 15.8 185 1497-1695 111-345 (370)
202 KOG1188 WD40 repeat protein [G 99.0 5.3E-09 1.1E-13 122.1 15.0 184 1522-1714 41-251 (376)
203 KOG0290 Conserved WD40 repeat- 99.0 1.2E-08 2.5E-13 117.1 16.9 217 1506-1735 94-356 (364)
204 PRK04792 tolB translocation pr 99.0 5.6E-08 1.2E-12 122.4 24.7 191 1532-1735 199-412 (448)
205 PRK04792 tolB translocation pr 99.0 6.3E-08 1.4E-12 121.9 25.2 207 1502-1725 211-446 (448)
206 PF08662 eIF2A: Eukaryotic tra 99.0 1.6E-08 3.4E-13 113.8 17.8 132 1555-1699 7-162 (194)
207 TIGR02800 propeller_TolB tol-p 99.0 7.4E-08 1.6E-12 118.8 25.2 192 1530-1736 169-385 (417)
208 KOG1272 WD40-repeat-containing 99.0 2.1E-09 4.5E-14 128.9 10.7 204 1512-1731 132-350 (545)
209 KOG1445 Tumor-specific antigen 99.0 4.9E-09 1.1E-13 128.1 13.9 184 1499-1699 70-281 (1012)
210 KOG0650 WD40 repeat nucleolar 99.0 1.1E-08 2.4E-13 125.4 16.7 183 1545-1735 394-627 (733)
211 PRK00178 tolB translocation pr 98.9 6.6E-08 1.4E-12 120.5 24.2 183 1501-1699 191-392 (430)
212 KOG0649 WD40 repeat protein [G 98.9 7.9E-08 1.7E-12 108.2 21.9 201 1500-1714 54-282 (325)
213 KOG1188 WD40 repeat protein [G 98.9 1.5E-08 3.2E-13 118.5 15.3 234 1490-1734 52-335 (376)
214 TIGR02800 propeller_TolB tol-p 98.9 1.2E-07 2.6E-12 117.0 23.4 183 1501-1699 182-383 (417)
215 KOG1354 Serine/threonine prote 98.9 2.1E-08 4.5E-13 117.1 15.2 192 1510-1707 85-361 (433)
216 KOG2315 Predicted translation 98.9 7.8E-07 1.7E-11 109.7 28.8 276 1511-1812 75-391 (566)
217 KOG2314 Translation initiation 98.9 4.2E-07 9E-12 111.3 26.1 275 1506-1810 248-572 (698)
218 KOG0322 G-protein beta subunit 98.9 3.3E-08 7.1E-13 112.4 15.7 274 1500-1810 6-322 (323)
219 KOG0644 Uncharacterized conser 98.9 3.5E-09 7.6E-14 132.9 8.7 199 1488-1699 212-457 (1113)
220 KOG3881 Uncharacterized conser 98.9 1.2E-07 2.7E-12 112.5 20.1 249 1510-1785 56-341 (412)
221 PF02239 Cytochrom_D1: Cytochr 98.8 1.3E-06 2.7E-11 107.7 29.8 271 1524-1811 9-302 (369)
222 KOG4497 Uncharacterized conser 98.8 3.5E-08 7.6E-13 114.5 13.5 161 1560-1733 15-196 (447)
223 COG5354 Uncharacterized protei 98.8 1.1E-06 2.4E-11 107.3 26.6 276 1511-1813 73-397 (561)
224 KOG1523 Actin-related protein 98.8 2.7E-07 5.7E-12 107.6 19.3 182 1510-1699 11-225 (361)
225 KOG1963 WD40 repeat protein [G 98.8 7.4E-07 1.6E-11 114.3 24.7 246 1480-1734 221-528 (792)
226 KOG2139 WD40 repeat protein [G 98.8 8.5E-07 1.8E-11 104.6 23.1 211 1510-1735 141-421 (445)
227 KOG1517 Guanine nucleotide bin 98.7 1.4E-07 3.1E-12 121.3 17.1 235 1490-1737 1088-1373(1387)
228 PRK01029 tolB translocation pr 98.7 2.2E-06 4.7E-11 107.6 27.6 194 1531-1734 165-389 (428)
229 KOG3881 Uncharacterized conser 98.7 2.4E-07 5.2E-12 110.2 17.7 199 1510-1725 106-341 (412)
230 KOG0771 Prolactin regulatory e 98.7 7.9E-08 1.7E-12 115.2 13.9 170 1555-1737 148-346 (398)
231 KOG2314 Translation initiation 98.7 1.3E-06 2.9E-11 107.0 23.6 234 1554-1811 213-478 (698)
232 KOG1354 Serine/threonine prote 98.7 2.1E-07 4.6E-12 108.9 16.2 277 1510-1794 26-424 (433)
233 KOG2445 Nuclear pore complex c 98.7 9.2E-07 2E-11 102.7 20.5 202 1496-1704 47-317 (361)
234 PRK01029 tolB translocation pr 98.7 2.5E-06 5.4E-11 107.1 26.2 212 1504-1727 180-426 (428)
235 COG2706 3-carboxymuconate cycl 98.7 1.2E-05 2.5E-10 96.0 29.5 266 1523-1812 4-322 (346)
236 PF10282 Lactonase: Lactonase, 98.7 1.5E-05 3.3E-10 97.2 31.7 258 1524-1810 2-321 (345)
237 KOG2394 WD40 protein DMR-N9 [G 98.7 1.1E-07 2.4E-12 115.9 12.2 129 1510-1654 220-384 (636)
238 KOG1240 Protein kinase contain 98.7 6.9E-07 1.5E-11 116.9 19.7 207 1496-1714 1036-1282(1431)
239 KOG1334 WD40 repeat protein [G 98.6 6.9E-08 1.5E-12 116.8 9.8 241 1493-1742 169-463 (559)
240 KOG2315 Predicted translation 98.6 1.3E-06 2.8E-11 107.9 20.3 244 1513-1785 129-410 (566)
241 KOG0290 Conserved WD40 repeat- 98.6 3.7E-07 8E-12 105.1 14.6 178 1506-1699 148-355 (364)
242 KOG1517 Guanine nucleotide bin 98.6 1.8E-06 4E-11 111.5 21.8 275 1511-1813 1066-1383(1387)
243 KOG2110 Uncharacterized conser 98.6 9.5E-06 2.1E-10 96.5 26.1 227 1552-1814 6-251 (391)
244 KOG4227 WD40 repeat protein [G 98.6 1E-06 2.2E-11 103.9 17.9 142 1478-1626 70-226 (609)
245 KOG2321 WD40 repeat protein [G 98.6 2E-06 4.4E-11 105.8 20.6 225 1500-1733 44-331 (703)
246 KOG2394 WD40 protein DMR-N9 [G 98.6 2.8E-07 6E-12 112.6 13.1 161 1518-1690 182-384 (636)
247 KOG1272 WD40-repeat-containing 98.6 1.9E-07 4.1E-12 112.5 9.8 194 1489-1699 190-398 (545)
248 PF10282 Lactonase: Lactonase, 98.5 2.3E-05 5E-10 95.7 27.0 208 1510-1723 87-345 (345)
249 KOG2041 WD40 repeat protein [G 98.5 2.4E-06 5.2E-11 106.4 17.5 257 1510-1793 15-326 (1189)
250 COG5354 Uncharacterized protei 98.5 1.1E-05 2.4E-10 98.9 21.8 242 1534-1794 15-293 (561)
251 KOG4547 WD40 repeat-containing 98.5 4E-06 8.7E-11 104.3 17.9 185 1518-1733 2-207 (541)
252 KOG2111 Uncharacterized conser 98.4 4.1E-05 8.8E-10 89.9 24.8 209 1511-1737 7-248 (346)
253 PF07433 DUF1513: Protein of u 98.4 5.6E-05 1.2E-09 90.2 25.3 215 1514-1733 9-274 (305)
254 KOG1064 RAVE (regulator of V-A 98.4 8.4E-07 1.8E-11 119.0 10.9 204 1506-1733 2206-2426(2439)
255 KOG2321 WD40 repeat protein [G 98.4 4E-06 8.7E-11 103.3 15.8 161 1524-1699 148-332 (703)
256 KOG1587 Cytoplasmic dynein int 98.4 2E-05 4.3E-10 101.0 22.8 253 1531-1811 222-516 (555)
257 KOG1310 WD40 repeat protein [G 98.4 2.8E-06 6.1E-11 103.9 14.1 189 1480-1677 66-311 (758)
258 KOG0322 G-protein beta subunit 98.4 2.1E-06 4.5E-11 98.2 11.3 147 1510-1668 151-322 (323)
259 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00043 9.3E-09 85.0 31.7 251 1531-1811 27-330 (352)
260 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00034 7.3E-09 85.9 29.8 245 1496-1772 35-338 (352)
261 PRK04043 tolB translocation pr 98.3 3.6E-05 7.7E-10 96.6 21.3 138 1511-1663 189-337 (419)
262 PRK04043 tolB translocation pr 98.3 9.5E-05 2.1E-09 92.9 24.7 168 1553-1734 189-386 (419)
263 KOG1523 Actin-related protein 98.3 9.7E-06 2.1E-10 94.9 13.8 160 1498-1663 45-225 (361)
264 KOG4190 Uncharacterized conser 98.2 2.7E-06 5.8E-11 103.3 9.1 170 1501-1680 728-917 (1034)
265 KOG0974 WD-repeat protein WDR6 98.2 3.9E-06 8.5E-11 109.3 11.2 135 1479-1626 148-289 (967)
266 COG5170 CDC55 Serine/threonine 98.2 8.3E-06 1.8E-10 94.6 10.8 219 1510-1734 27-356 (460)
267 KOG1240 Protein kinase contain 98.1 2.9E-05 6.3E-10 102.4 16.1 194 1536-1734 1034-1260(1431)
268 KOG1064 RAVE (regulator of V-A 98.1 7.3E-06 1.6E-10 110.5 10.5 190 1488-1703 2230-2433(2439)
269 COG2706 3-carboxymuconate cycl 98.1 0.00052 1.1E-08 82.3 24.7 220 1506-1735 37-310 (346)
270 KOG2111 Uncharacterized conser 98.1 0.00022 4.8E-09 83.9 20.2 161 1531-1705 75-256 (346)
271 COG5170 CDC55 Serine/threonine 98.0 3E-05 6.5E-10 90.2 11.2 184 1511-1699 87-356 (460)
272 KOG4547 WD40 repeat-containing 98.0 0.00016 3.4E-09 90.6 17.7 133 1520-1670 69-221 (541)
273 PF00400 WD40: WD domain, G-be 98.0 1.9E-05 4E-10 65.6 6.3 38 1499-1537 2-39 (39)
274 KOG2695 WD40 repeat protein [G 97.9 1.6E-05 3.6E-10 93.6 7.5 118 1510-1634 253-385 (425)
275 PF04762 IKI3: IKI3 family; I 97.9 0.0017 3.7E-08 88.7 27.5 175 1509-1692 120-360 (928)
276 COG4946 Uncharacterized protei 97.9 0.001 2.2E-08 81.4 22.2 277 1506-1813 357-656 (668)
277 KOG0974 WD-repeat protein WDR6 97.9 7.6E-05 1.6E-09 97.8 12.5 139 1515-1669 139-288 (967)
278 COG4946 Uncharacterized protei 97.9 0.0011 2.5E-08 80.9 21.3 205 1514-1734 271-507 (668)
279 PLN02919 haloacid dehalogenase 97.8 0.004 8.6E-08 86.6 29.4 210 1514-1733 572-876 (1057)
280 PLN02919 haloacid dehalogenase 97.8 0.0012 2.6E-08 91.6 24.2 189 1512-1709 626-892 (1057)
281 KOG2041 WD40 repeat protein [G 97.8 0.0002 4.3E-09 90.1 14.4 222 1498-1733 61-326 (1189)
282 KOG0309 Conserved WD40 repeat- 97.8 6.5E-05 1.4E-09 94.8 9.1 169 1502-1684 108-302 (1081)
283 PF08450 SGL: SMP-30/Gluconola 97.7 0.0089 1.9E-07 69.4 25.5 204 1514-1733 4-243 (246)
284 KOG0280 Uncharacterized conser 97.7 0.00014 3E-09 84.8 9.4 125 1497-1628 154-287 (339)
285 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.0053 1.1E-07 75.5 23.4 255 1518-1794 1-346 (353)
286 PF04762 IKI3: IKI3 family; I 97.6 0.012 2.5E-07 80.9 27.6 269 1510-1811 22-333 (928)
287 KOG4532 WD40-like repeat conta 97.5 0.0044 9.4E-08 72.0 18.6 204 1520-1733 83-308 (344)
288 KOG3914 WD repeat protein WDR4 97.5 0.00012 2.6E-09 88.3 6.3 84 1504-1593 147-232 (390)
289 KOG1645 RING-finger-containing 97.5 0.0021 4.5E-08 77.8 16.3 247 1533-1810 175-460 (463)
290 KOG4190 Uncharacterized conser 97.5 0.00016 3.5E-09 88.4 7.1 161 1544-1714 728-915 (1034)
291 KOG4532 WD40-like repeat conta 97.4 0.0048 1E-07 71.7 16.5 168 1523-1699 130-321 (344)
292 KOG3914 WD repeat protein WDR4 97.4 0.0015 3.3E-08 79.2 13.1 151 1511-1679 64-233 (390)
293 COG0823 TolB Periplasmic compo 97.3 0.0096 2.1E-07 75.2 20.3 166 1560-1734 199-388 (425)
294 PF15492 Nbas_N: Neuroblastoma 97.3 0.012 2.7E-07 69.3 19.3 186 1511-1716 45-270 (282)
295 PF07433 DUF1513: Protein of u 97.3 0.066 1.4E-06 64.7 24.8 198 1560-1787 11-269 (305)
296 KOG2695 WD40 repeat protein [G 97.3 0.00086 1.9E-08 79.7 9.0 143 1562-1715 222-386 (425)
297 KOG1409 Uncharacterized conser 97.2 0.0019 4E-08 77.0 11.6 89 1492-1583 181-271 (404)
298 KOG0280 Uncharacterized conser 97.2 0.0034 7.5E-08 73.7 13.2 174 1512-1699 124-320 (339)
299 PF13360 PQQ_2: PQQ-like domai 97.2 0.018 3.9E-07 65.6 19.0 183 1519-1711 34-236 (238)
300 PF15492 Nbas_N: Neuroblastoma 97.2 0.055 1.2E-06 64.0 22.3 136 1560-1699 4-166 (282)
301 PF04931 DNA_pol_phi: DNA poly 97.1 0.00037 7.9E-09 94.0 5.3 49 662-713 2-50 (784)
302 PF00400 WD40: WD domain, G-be 97.1 0.00063 1.4E-08 56.4 4.7 38 1541-1580 1-39 (39)
303 PRK02888 nitrous-oxide reducta 97.1 0.069 1.5E-06 69.5 24.5 179 1598-1812 198-405 (635)
304 KOG1645 RING-finger-containing 97.1 0.0061 1.3E-07 74.0 14.1 99 1491-1593 176-276 (463)
305 TIGR03300 assembly_YfgL outer 97.1 0.2 4.3E-06 62.0 27.8 223 1520-1775 104-349 (377)
306 KOG1912 WD40 repeat protein [G 97.1 0.042 9E-07 71.1 21.7 191 1497-1693 44-285 (1062)
307 PF04931 DNA_pol_phi: DNA poly 97.1 0.00017 3.6E-09 97.2 0.9 13 1422-1434 409-421 (784)
308 PF08450 SGL: SMP-30/Gluconola 97.1 0.049 1.1E-06 63.3 20.9 172 1512-1698 42-243 (246)
309 TIGR03300 assembly_YfgL outer 97.0 0.2 4.4E-06 61.8 26.6 107 1520-1634 64-172 (377)
310 COG0823 TolB Periplasmic compo 97.0 0.013 2.9E-07 74.0 16.3 174 1510-1699 193-388 (425)
311 PF13360 PQQ_2: PQQ-like domai 97.0 0.15 3.3E-06 58.1 23.6 193 1530-1734 2-219 (238)
312 KOG2066 Vacuolar assembly/sort 96.9 0.023 5E-07 74.0 18.0 141 1518-1669 80-233 (846)
313 PF08513 LisH: LisH; InterPro 96.9 0.0013 2.8E-08 51.9 4.0 27 1169-1195 1-27 (27)
314 KOG2114 Vacuolar assembly/sort 96.8 0.11 2.5E-06 68.3 22.1 208 1511-1733 27-271 (933)
315 PRK02888 nitrous-oxide reducta 96.8 0.049 1.1E-06 70.8 19.0 203 1515-1735 198-451 (635)
316 KOG2066 Vacuolar assembly/sort 96.7 0.0088 1.9E-07 77.6 12.2 165 1510-1697 40-222 (846)
317 KOG1920 IkappaB kinase complex 96.6 0.23 4.9E-06 67.7 24.0 206 1510-1727 69-346 (1265)
318 KOG1409 Uncharacterized conser 96.6 0.022 4.8E-07 68.3 13.3 125 1496-1627 102-272 (404)
319 KOG4714 Nucleoporin [Nuclear s 96.6 0.0063 1.4E-07 70.6 8.4 90 1492-1583 160-255 (319)
320 KOG1275 PAB-dependent poly(A) 96.6 0.019 4.2E-07 75.2 13.6 169 1520-1703 146-340 (1118)
321 smart00320 WD40 WD40 repeats. 96.5 0.0055 1.2E-07 47.0 5.4 38 1499-1537 3-40 (40)
322 KOG0882 Cyclophilin-related pe 96.5 0.031 6.8E-07 68.8 14.0 206 1501-1714 46-314 (558)
323 KOG2038 CAATT-binding transcri 96.5 0.0022 4.7E-08 82.3 4.2 17 905-921 319-335 (988)
324 PF06524 NOA36: NOA36 protein; 96.4 0.0053 1.2E-07 70.6 6.4 16 1804-1819 228-243 (314)
325 KOG0309 Conserved WD40 repeat- 96.4 0.011 2.4E-07 75.7 9.3 115 1512-1634 70-198 (1081)
326 PF04053 Coatomer_WDAD: Coatom 96.4 0.31 6.8E-06 62.2 22.3 161 1550-1733 31-213 (443)
327 KOG3621 WD40 repeat-containing 96.3 0.1 2.2E-06 67.5 17.6 112 1510-1626 34-155 (726)
328 PF11768 DUF3312: Protein of u 96.3 0.011 2.4E-07 75.0 8.9 73 1506-1583 257-330 (545)
329 PF14583 Pectate_lyase22: Olig 96.2 1.5 3.2E-05 54.9 25.9 207 1516-1732 42-299 (386)
330 PF00930 DPPIV_N: Dipeptidyl p 96.0 0.58 1.3E-05 57.9 22.0 93 1562-1661 1-117 (353)
331 KOG1275 PAB-dependent poly(A) 96.0 0.061 1.3E-06 70.8 13.5 157 1494-1667 163-340 (1118)
332 KOG1920 IkappaB kinase complex 95.9 0.8 1.7E-05 62.7 23.4 231 1552-1811 69-322 (1265)
333 KOG1912 WD40 repeat protein [G 95.8 0.17 3.7E-06 65.8 16.1 118 1510-1634 16-152 (1062)
334 KOG0882 Cyclophilin-related pe 95.8 0.021 4.6E-07 70.2 8.0 195 1507-1714 8-240 (558)
335 PF11768 DUF3312: Protein of u 95.7 0.083 1.8E-06 67.5 12.5 111 1512-1629 208-333 (545)
336 PF06977 SdiA-regulated: SdiA- 95.7 0.63 1.4E-05 55.3 19.1 116 1503-1625 16-147 (248)
337 COG3490 Uncharacterized protei 95.5 0.95 2.1E-05 54.0 19.4 203 1515-1721 73-326 (366)
338 PF00780 CNH: CNH domain; Int 95.2 5.6 0.00012 47.0 25.3 162 1520-1700 6-208 (275)
339 PRK11138 outer membrane biogen 95.2 3.7 8.1E-05 51.4 25.0 107 1520-1634 68-187 (394)
340 smart00667 LisH Lissencephaly 95.1 0.033 7.2E-07 44.8 4.4 31 1167-1197 2-32 (34)
341 PF02897 Peptidase_S9_N: Proly 95.1 4.7 0.0001 50.7 25.6 112 1512-1627 126-262 (414)
342 PF06433 Me-amine-dh_H: Methyl 95.0 1.9 4.2E-05 53.1 20.9 235 1513-1774 39-330 (342)
343 PF06433 Me-amine-dh_H: Methyl 95.0 1.7 3.8E-05 53.5 20.4 197 1513-1718 98-333 (342)
344 KOG4714 Nucleoporin [Nuclear s 95.0 0.05 1.1E-06 63.4 7.0 90 1531-1626 159-255 (319)
345 COG3391 Uncharacterized conser 94.8 11 0.00025 47.4 27.8 211 1512-1734 33-271 (381)
346 COG3391 Uncharacterized conser 94.7 1.5 3.3E-05 54.9 19.5 156 1512-1679 118-293 (381)
347 PF04147 Nop14: Nop14-like fam 94.6 0.042 9E-07 75.0 5.9 15 1422-1436 85-99 (840)
348 PF05096 Glu_cyclase_2: Glutam 94.4 3 6.4E-05 50.0 19.7 189 1499-1703 34-253 (264)
349 PF04053 Coatomer_WDAD: Coatom 94.3 0.71 1.5E-05 59.1 15.7 157 1510-1691 33-207 (443)
350 PRK11138 outer membrane biogen 94.2 6.6 0.00014 49.3 23.7 106 1520-1633 119-231 (394)
351 PF14583 Pectate_lyase22: Olig 93.8 10 0.00023 47.7 23.7 240 1487-1735 59-370 (386)
352 smart00320 WD40 WD40 repeats. 93.7 0.13 2.9E-06 39.1 4.9 38 1541-1580 2-40 (40)
353 KOG0943 Predicted ubiquitin-pr 93.6 0.053 1.1E-06 71.7 3.6 88 1069-1181 885-972 (3015)
354 KOG3617 WD40 and TPR repeat-co 93.5 0.8 1.7E-05 60.3 13.6 70 1512-1583 62-132 (1416)
355 KOG1008 Uncharacterized conser 93.3 0.035 7.5E-07 70.8 1.4 169 1510-1692 57-255 (783)
356 PF08553 VID27: VID27 cytoplas 93.1 0.87 1.9E-05 61.6 13.9 132 1526-1668 499-646 (794)
357 KOG2114 Vacuolar assembly/sort 93.1 3.2 6.8E-05 55.6 18.2 172 1495-1681 51-256 (933)
358 KOG4640 Anaphase-promoting com 92.8 0.28 6.1E-06 63.1 8.3 77 1510-1591 21-99 (665)
359 PF08553 VID27: VID27 cytoplas 92.3 4.3 9.3E-05 55.3 18.6 127 1491-1625 507-647 (794)
360 KOG2395 Protein involved in va 92.2 1.4 2.9E-05 56.2 12.9 129 1520-1663 344-490 (644)
361 PF04841 Vps16_N: Vps16, N-ter 92.2 14 0.00031 47.1 22.4 65 1515-1582 34-109 (410)
362 KOG4649 PQQ (pyrrolo-quinoline 92.2 13 0.00028 44.4 19.7 105 1521-1634 23-132 (354)
363 COG3386 Gluconolactonase [Carb 92.0 10 0.00022 46.7 20.0 128 1596-1733 28-180 (307)
364 PF14783 BBS2_Mid: Ciliary BBS 91.8 3.2 6.9E-05 43.8 13.1 66 1512-1582 2-71 (111)
365 KOG1008 Uncharacterized conser 91.5 0.088 1.9E-06 67.4 1.8 155 1503-1669 97-275 (783)
366 KOG0943 Predicted ubiquitin-pr 91.1 0.15 3.4E-06 67.7 3.4 21 285-305 82-102 (3015)
367 PF06977 SdiA-regulated: SdiA- 90.3 11 0.00024 45.0 17.5 176 1546-1733 16-239 (248)
368 cd00216 PQQ_DH Dehydrogenases 90.3 55 0.0012 42.7 25.3 109 1522-1634 111-273 (488)
369 KOG2079 Vacuolar assembly/sort 90.0 0.77 1.7E-05 62.2 8.3 74 1507-1582 128-203 (1206)
370 COG3386 Gluconolactonase [Carb 89.9 36 0.00079 42.0 21.9 202 1516-1733 31-273 (307)
371 PF08596 Lgl_C: Lethal giant l 89.6 19 0.00042 45.8 19.9 213 1511-1733 3-324 (395)
372 PF00780 CNH: CNH domain; Int 89.4 52 0.0011 38.9 23.1 199 1510-1718 36-268 (275)
373 PF05694 SBP56: 56kDa selenium 89.4 20 0.00044 45.8 19.2 204 1520-1733 86-391 (461)
374 COG3490 Uncharacterized protei 89.0 4.1 8.8E-05 49.0 12.2 142 1650-1794 73-244 (366)
375 PRK13616 lipoprotein LpqB; Pro 88.7 9 0.00019 51.1 16.7 138 1510-1660 350-512 (591)
376 PF04841 Vps16_N: Vps16, N-ter 88.5 37 0.00079 43.5 21.4 27 1595-1625 83-109 (410)
377 PF15390 DUF4613: Domain of un 88.1 5 0.00011 52.2 13.0 139 1551-1705 19-186 (671)
378 KOG0262 RNA polymerase I, larg 87.9 0.52 1.1E-05 64.1 4.6 25 648-672 184-208 (1640)
379 TIGR03074 PQQ_membr_DH membran 86.4 63 0.0014 44.7 22.8 111 1521-1634 194-353 (764)
380 PF05694 SBP56: 56kDa selenium 85.9 29 0.00062 44.5 17.7 183 1603-1812 86-343 (461)
381 PF12894 Apc4_WD40: Anaphase-p 85.9 1.8 3.9E-05 38.8 5.5 33 1510-1543 12-44 (47)
382 PF02897 Peptidase_S9_N: Proly 85.8 64 0.0014 40.7 21.4 187 1514-1709 174-408 (414)
383 KOG4649 PQQ (pyrrolo-quinoline 84.9 58 0.0013 39.2 18.3 69 1520-1593 62-132 (354)
384 KOG1897 Damage-specific DNA bi 84.9 1.9E+02 0.0041 40.6 26.2 272 1510-1813 531-858 (1096)
385 PF12234 Rav1p_C: RAVE protein 84.7 11 0.00023 50.4 14.0 110 1511-1625 31-156 (631)
386 KOG2051 Nonsense-mediated mRNA 84.5 0.58 1.3E-05 63.3 2.6 18 695-712 141-158 (1128)
387 cd00216 PQQ_DH Dehydrogenases 84.1 49 0.0011 43.2 19.6 100 1529-1634 173-328 (488)
388 TIGR02604 Piru_Ver_Nterm putat 84.1 17 0.00036 45.6 14.9 142 1510-1663 14-202 (367)
389 KOG1189 Global transcriptional 84.0 0.84 1.8E-05 59.8 3.6 22 749-770 149-170 (960)
390 KOG1189 Global transcriptional 83.6 0.81 1.8E-05 59.9 3.2 9 712-720 207-215 (960)
391 KOG1991 Nuclear transport rece 83.5 0.52 1.1E-05 63.4 1.6 12 1095-1106 457-468 (1010)
392 PF07995 GSDH: Glucose / Sorbo 83.1 10 0.00022 46.9 12.4 107 1554-1663 4-132 (331)
393 PF02724 CDC45: CDC45-like pro 82.8 0.77 1.7E-05 61.1 2.7 6 1804-1809 98-103 (622)
394 PF08596 Lgl_C: Lethal giant l 82.0 57 0.0012 41.7 18.5 190 1497-1699 75-325 (395)
395 PRK10115 protease 2; Provision 81.8 2.2E+02 0.0048 39.1 27.0 111 1511-1625 128-255 (686)
396 cd00020 ARM Armadillo/beta-cat 81.7 2.1 4.7E-05 43.1 4.9 111 561-685 3-117 (120)
397 PLN03200 cellulose synthase-in 80.7 77 0.0017 47.9 20.9 72 544-625 469-541 (2102)
398 KOG4640 Anaphase-promoting com 80.4 5 0.00011 52.3 8.4 74 1552-1633 21-100 (665)
399 KOG2079 Vacuolar assembly/sort 80.4 4.7 0.0001 55.2 8.5 87 1520-1610 98-193 (1206)
400 COG5271 MDN1 AAA ATPase contai 80.1 1.6 3.4E-05 61.5 4.0 109 1813-1921 3947-4069(4600)
401 PF02724 CDC45: CDC45-like pro 79.9 1 2.2E-05 60.1 2.3 6 1772-1777 81-86 (622)
402 KOG1991 Nuclear transport rece 79.8 1 2.2E-05 60.8 2.3 11 1067-1077 478-488 (1010)
403 KOG3621 WD40 repeat-containing 79.6 27 0.00058 46.6 14.4 72 1510-1583 77-155 (726)
404 KOG0262 RNA polymerase I, larg 79.4 1.4 3.1E-05 60.3 3.3 19 1059-1077 565-583 (1640)
405 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.1 1.3E+02 0.0028 39.9 21.0 111 1521-1634 69-198 (527)
406 PRK10115 protease 2; Provision 78.9 1.9E+02 0.004 39.8 22.9 95 1596-1699 130-241 (686)
407 PF03344 Daxx: Daxx Family; I 78.0 0.7 1.5E-05 62.0 0.0 10 1122-1131 112-121 (713)
408 KOG2395 Protein involved in va 77.7 39 0.00084 43.9 14.6 126 1490-1625 358-500 (644)
409 PF03224 V-ATPase_H_N: V-ATPas 77.6 5.7 0.00012 48.6 7.6 137 536-683 120-281 (312)
410 PF15390 DUF4613: Domain of un 77.6 23 0.0005 46.5 12.9 141 1511-1670 21-187 (671)
411 KOG3617 WD40 and TPR repeat-co 77.4 4.3 9.4E-05 54.0 6.6 102 1512-1625 18-131 (1416)
412 COG3204 Uncharacterized protei 76.3 1.3E+02 0.0027 37.2 17.6 108 1510-1625 86-210 (316)
413 KOG4499 Ca2+-binding protein R 75.1 1.2E+02 0.0026 36.3 16.4 64 1560-1628 115-193 (310)
414 PF05096 Glu_cyclase_2: Glutam 73.7 2.2E+02 0.0048 34.7 20.8 172 1596-1795 48-250 (264)
415 PF07250 Glyoxal_oxid_N: Glyox 73.3 25 0.00054 42.1 11.0 140 1576-1718 48-210 (243)
416 KOG2444 WD40 repeat protein [G 73.2 10 0.00022 44.5 7.6 100 1521-1630 70-171 (238)
417 PF14870 PSII_BNR: Photosynthe 73.2 2.4E+02 0.0053 35.0 21.7 144 1548-1699 141-294 (302)
418 KOG3630 Nuclear pore complex, 72.5 16 0.00034 50.8 10.0 151 1505-1663 96-262 (1405)
419 TIGR02604 Piru_Ver_Nterm putat 72.4 72 0.0016 40.1 15.5 103 1554-1663 16-142 (367)
420 PF07569 Hira: TUP1-like enhan 69.7 16 0.00034 42.9 8.3 65 1517-1583 18-96 (219)
421 COG5406 Nucleosome binding fac 69.6 2.5 5.4E-05 54.4 1.9 15 756-770 188-202 (1001)
422 KOG4441 Proteins containing BT 69.0 2.1E+02 0.0046 38.5 19.3 110 1514-1630 327-457 (571)
423 PRK13616 lipoprotein LpqB; Pro 68.4 79 0.0017 42.5 15.3 56 1552-1610 350-414 (591)
424 PF07250 Glyoxal_oxid_N: Glyox 68.0 74 0.0016 38.2 13.4 144 1534-1681 49-209 (243)
425 PF03178 CPSF_A: CPSF A subuni 67.4 92 0.002 38.1 14.7 96 1521-1625 42-157 (321)
426 PF05935 Arylsulfotrans: Aryls 65.4 82 0.0018 41.2 14.3 48 1560-1611 154-208 (477)
427 KOG2280 Vacuolar assembly/sort 64.9 1.3E+02 0.0028 41.0 15.5 190 1528-1732 61-276 (829)
428 PF10647 Gmad1: Lipoprotein Lp 64.4 3.1E+02 0.0068 32.8 20.9 149 1511-1663 25-184 (253)
429 PRK13684 Ycf48-like protein; P 63.5 2.1E+02 0.0046 35.6 16.9 139 1510-1663 173-321 (334)
430 TIGR03606 non_repeat_PQQ dehyd 63.0 3.5E+02 0.0076 35.5 18.9 53 1510-1564 30-89 (454)
431 PF14870 PSII_BNR: Photosynthe 63.0 1.8E+02 0.0039 36.0 15.8 117 1510-1633 145-268 (302)
432 COG5593 Nucleic-acid-binding p 62.9 6.1 0.00013 50.4 3.4 18 1164-1181 204-221 (821)
433 COG3823 Glutamine cyclotransfe 61.7 1.1E+02 0.0023 36.2 12.4 101 1520-1632 55-165 (262)
434 TIGR03118 PEPCTERM_chp_1 conse 60.9 4.2E+02 0.0092 33.1 23.6 209 1512-1725 25-307 (336)
435 PF10313 DUF2415: Uncharacteri 60.8 19 0.00042 32.1 5.1 31 1510-1540 1-34 (43)
436 COG3204 Uncharacterized protei 60.1 4.2E+02 0.0092 32.9 17.9 109 1548-1663 82-199 (316)
437 PF14783 BBS2_Mid: Ciliary BBS 59.9 1.1E+02 0.0024 32.7 11.3 64 1554-1625 2-71 (111)
438 PHA02790 Kelch-like protein; P 59.1 1.5E+02 0.0032 38.8 15.1 141 1521-1672 272-426 (480)
439 KOG4499 Ca2+-binding protein R 58.7 4E+02 0.0087 32.2 17.5 206 1521-1737 27-276 (310)
440 TIGR03075 PQQ_enz_alc_DH PQQ-d 58.2 1.3E+02 0.0028 40.0 14.3 26 1519-1544 310-338 (527)
441 PF10214 Rrn6: RNA polymerase 57.6 6E+02 0.013 35.5 21.0 151 1549-1702 77-272 (765)
442 KOG1897 Damage-specific DNA bi 56.5 8E+02 0.017 35.0 25.1 171 1512-1699 586-794 (1096)
443 PF12894 Apc4_WD40: Anaphase-p 56.0 19 0.00041 32.5 4.4 32 1595-1630 14-45 (47)
444 cd00020 ARM Armadillo/beta-cat 55.9 20 0.00044 36.1 5.3 74 541-622 24-99 (120)
445 KOG0526 Nucleosome-binding fac 55.2 8.5 0.00018 49.4 2.8 13 1645-1657 272-284 (615)
446 PF14655 RAB3GAP2_N: Rab3 GTPa 55.1 65 0.0014 41.5 10.5 77 1551-1634 307-407 (415)
447 PF14655 RAB3GAP2_N: Rab3 GTPa 54.8 79 0.0017 40.7 11.2 86 1503-1592 302-406 (415)
448 PF03178 CPSF_A: CPSF A subuni 54.8 59 0.0013 39.7 10.0 105 1510-1625 89-202 (321)
449 KOG1916 Nuclear protein, conta 53.5 15 0.00033 49.8 4.7 69 1512-1581 186-264 (1283)
450 PF09398 FOP_dimer: FOP N term 53.3 16 0.00034 36.7 3.8 30 1169-1198 19-48 (81)
451 COG5593 Nucleic-acid-binding p 52.0 13 0.00029 47.6 3.7 17 1071-1087 369-385 (821)
452 PHA03098 kelch-like protein; P 51.6 2.5E+02 0.0055 36.9 15.6 105 1520-1629 294-418 (534)
453 PF07995 GSDH: Glucose / Sorbo 51.0 5.8E+02 0.013 31.8 22.6 30 1595-1629 4-33 (331)
454 KOG4364 Chromatin assembly fac 50.8 16 0.00035 48.0 4.2 8 1422-1429 245-252 (811)
455 PF10647 Gmad1: Lipoprotein Lp 50.4 5.2E+02 0.011 31.0 16.6 95 1553-1660 25-127 (253)
456 PF14781 BBS2_N: Ciliary BBSom 48.9 3.6E+02 0.0077 30.0 13.2 112 1513-1631 2-131 (136)
457 KOG4264 Nucleo-cytoplasmic pro 48.6 19 0.00041 46.2 4.3 101 1805-1909 59-174 (694)
458 PF14761 HPS3_N: Hermansky-Pud 48.6 1.8E+02 0.004 34.4 11.8 102 1516-1625 22-163 (215)
459 KOG2444 WD40 repeat protein [G 48.3 28 0.00061 41.1 5.3 73 1509-1583 102-178 (238)
460 PF11841 DUF3361: Domain of un 47.8 42 0.0009 37.8 6.4 86 827-922 4-92 (160)
461 PF11841 DUF3361: Domain of un 47.8 9.6 0.00021 42.7 1.5 58 606-664 3-67 (160)
462 PF12234 Rav1p_C: RAVE protein 47.1 1.1E+02 0.0025 41.2 11.2 128 1531-1667 1-154 (631)
463 PF05764 YL1: YL1 nuclear prot 46.0 19 0.00041 42.8 3.7 46 1855-1909 36-81 (240)
464 PF04050 Upf2: Up-frameshift s 45.9 4.7 0.0001 45.4 -1.2 65 1851-1919 1-65 (170)
465 PF05764 YL1: YL1 nuclear prot 45.5 14 0.0003 44.0 2.4 42 1871-1912 36-77 (240)
466 KOG4460 Nuclear pore complex, 45.1 3.5E+02 0.0075 35.8 14.2 188 1446-1663 33-233 (741)
467 PF14727 PHTB1_N: PTHB1 N-term 45.0 8.4E+02 0.018 31.8 22.0 224 1489-1725 5-288 (418)
468 COG5137 Histone chaperone invo 44.8 16 0.00034 42.3 2.6 88 1814-1901 171-258 (279)
469 KOG2076 RNA polymerase III tra 44.4 12 0.00025 50.9 1.8 94 1818-1916 12-105 (895)
470 PF05935 Arylsulfotrans: Aryls 44.3 8.8E+02 0.019 31.9 20.0 174 1515-1699 153-435 (477)
471 PF00514 Arm: Armadillo/beta-c 44.1 30 0.00066 29.5 3.7 40 1034-1080 2-41 (41)
472 KOG3130 Uncharacterized conser 44.1 14 0.00031 45.9 2.3 40 1846-1885 266-305 (514)
473 PF10214 Rrn6: RNA polymerase 43.8 5.4E+02 0.012 35.9 17.3 155 1509-1697 145-325 (765)
474 KOG2652 RNA polymerase II tran 43.2 17 0.00037 44.8 2.7 48 1858-1916 254-302 (348)
475 KOG1980 Uncharacterized conser 42.9 7.6 0.00016 50.8 -0.2 64 1858-1922 379-443 (754)
476 TIGR01651 CobT cobaltochelatas 42.7 22 0.00048 47.0 3.8 79 1819-1906 198-276 (600)
477 PHA02713 hypothetical protein; 42.6 2.2E+02 0.0049 38.0 13.1 185 1520-1718 303-546 (557)
478 PLN00033 photosystem II stabil 41.7 5.5E+02 0.012 33.2 15.7 141 1509-1662 238-388 (398)
479 KOG2147 Nucleolar protein invo 41.1 21 0.00046 47.7 3.3 83 1820-1911 285-367 (823)
480 PF05804 KAP: Kinesin-associat 40.9 1E+02 0.0022 42.4 9.5 154 541-707 307-460 (708)
481 KOG1980 Uncharacterized conser 40.6 9.8 0.00021 49.8 0.2 73 1849-1921 380-457 (754)
482 PRK13684 Ycf48-like protein; P 40.4 8.3E+02 0.018 30.5 19.3 168 1520-1698 141-320 (334)
483 KOG0526 Nucleosome-binding fac 40.1 26 0.00056 45.4 3.7 58 1820-1877 448-505 (615)
484 PHA02608 67 prohead core prote 40.0 19 0.00041 35.6 1.9 35 1846-1880 46-80 (80)
485 PF05793 TFIIF_alpha: Transcri 39.7 9.7 0.00021 50.1 0.0 100 1819-1918 215-329 (527)
486 TIGR03606 non_repeat_PQQ dehyd 38.8 1.9E+02 0.0041 37.8 11.2 104 1555-1663 33-164 (454)
487 TIGR03074 PQQ_membr_DH membran 38.6 9.5E+02 0.02 33.8 18.2 143 1520-1678 259-486 (764)
488 KOG0699 Serine/threonine prote 38.5 25 0.00054 43.4 3.1 51 1852-1911 259-312 (542)
489 KOG1789 Endocytosis protein RM 38.4 40 0.00086 46.6 5.0 73 541-622 1789-1861(2235)
490 KOG3630 Nuclear pore complex, 38.4 3.6E+02 0.0078 38.7 13.7 235 1565-1800 54-333 (1405)
491 COG5271 MDN1 AAA ATPase contai 37.5 31 0.00067 50.1 3.9 105 1809-1916 3976-4093(4600)
492 PTZ00482 membrane-attack compl 37.4 38 0.00083 46.7 4.9 111 1810-1920 80-224 (844)
493 COG2133 Glucose/sorbosone dehy 36.5 5.6E+02 0.012 33.2 14.4 157 1513-1697 70-256 (399)
494 KOG2377 Uncharacterized conser 36.5 3.4E+02 0.0074 35.3 12.2 167 1454-1631 19-191 (657)
495 PF04050 Upf2: Up-frameshift s 35.9 7.9 0.00017 43.6 -1.4 64 1830-1902 1-64 (170)
496 KOG2652 RNA polymerase II tran 35.6 31 0.00068 42.6 3.3 48 1845-1894 255-302 (348)
497 PF03985 Paf1: Paf1 ; InterPr 35.0 39 0.00084 43.7 4.3 72 1844-1918 365-436 (436)
498 PF03066 Nucleoplasmin: Nucleo 35.0 13 0.00028 41.3 0.0 33 1851-1883 110-142 (149)
499 PF03066 Nucleoplasmin: Nucleo 35.0 13 0.00028 41.3 0.0 33 1854-1886 110-142 (149)
500 PF06025 DUF913: Domain of Unk 34.9 23 0.00049 45.0 2.1 33 590-622 337-369 (379)
No 1
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.5e-284 Score=2509.03 Aligned_cols=1398 Identities=57% Similarity=0.900 Sum_probs=1192.3
Q ss_pred cccchhHHHHHHHHHHhhhccccccccccchhHhhhhhcccccccccCccccccccccCCCCccchHHHHHHhhhhhHHh
Q 000177 118 ESRYSTSVQAAAARLVLSCSLTWIYPHAFEEPVVDNVKNWVMDETARLSCEDRHLKHHMSRKEASDSEMLKTYATGLLAV 197 (1922)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1922)
|++|||+|. ++|+||.|+++||||||| .|.+|+|+|||++..+|++| ++.+|+|+|-|||+||+||+||+
T Consensus 1 ~~s~~~~v~--s~~~l~~~~~~w~~~h~~--~~~~~~~~~~m~~~v~~~~e------~~~k~~~~~f~~~~~~~~~~~~l 70 (1516)
T KOG1832|consen 1 ENSYSTAVK--SARLLMNCSLTWMYPHVF--AVTENFKNWVMEEAVKFPGE------DSAKKEASDFEMLKTYSTGLLAL 70 (1516)
T ss_pred CCceeeehh--hHHHHHHHHHHhcccccc--cccccHHHHHHHHHHcCCch------hhccCCCChhhhcCCCchhhHHH
Confidence 689999999 789999999999999999 77799999999999999999 67789999999999999999999
Q ss_pred hhcCCCceehhhhhhhhHHHHHHhheeeeeccCccccccccccccccccccCcccccccccceeeeccCCCccccccccc
Q 000177 198 CLAGGGQVVEDVLTSGLSAKLMRYLRIRVLGETSQKDANHLAESKNSASATSLRGREEGRVRLRQILEHPDERTIDERSL 277 (1922)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (1922)
.|+..||+||||||+|||+|||||-|.| -|.||+||. ++...+| .|+|.+.+. ..+
T Consensus 71 ~~~~r~~~~~d~~~~~l~~~~~~~~~~~----------~~~t~~~~~----~l~~~~~--~~~~~i~~e-~~~------- 126 (1516)
T KOG1832|consen 71 SLASRGQIVEDVLTSGLSAKLMHYRVLR----------IHTTETKHV----SLKTKEE--SRVRKIVDE-GDH------- 126 (1516)
T ss_pred HHhhhceehhHHHHHHHHHHHHHhhccc----------cccchhhhe----eeecccc--ceeeeeecc-cch-------
Confidence 9999999999999999999999995554 367889997 7777777 678888773 222
Q ss_pred chhhhhcccC-C-CcCCCCCC----CCCCCcccccccccccccccccccccCCCCCCCCCchhhccccCCcccccCCccC
Q 000177 278 DDQDIERVTH-G-DECGADDG----EPHDGLAAGIDMSEAYTDAREGKTKLGDNDETGRDDSSRRRMNRGWIRSRGKGRI 351 (1922)
Q Consensus 278 ~~~~~~~~~~-~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1922)
-+|-+-+ | .++-.||+ +-++ .....|+|+|+|| |++.|+++++||++| +++||+||+
T Consensus 127 ---v~e~~~~~~~~~~qp~~~~~~~~~~~-----------~~~~~d~~~~~~d-~ns~~~~~~~~rl~~--~~~~~~~~~ 189 (1516)
T KOG1832|consen 127 ---VLETGREMGQTDVQPDGEFEIDDVFN-----------VSGVVDCKIKPGD-DNSVRDDPSRHRLNR--SKSRGRGRV 189 (1516)
T ss_pred ---HHHHHHHHhhhccCCCcceecchhcc-----------ccccceeccCCCC-ccchhhhHHHHHHHH--Hhhhhhhhh
Confidence 1221110 1 11222222 2333 6788999999999 899999999999999 899999999
Q ss_pred CCCCcccccccCCCCCCCccCCcccccccCcCccCCCCCCCCccccccccCCCccccccccCccccccccccccchHHHH
Q 000177 352 NEGAIETDQGLTSPVSGSRLGQVRSIRDRSVSKSSDTKKAPDGRKHSGTIGSDGVFMEREDGDDCFQECRVGSKDISDMV 431 (1922)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (1922)
-||++.+|+.+.||.- -.|||.+++..|++.+.||.-|.|+|.++.|.|++| +|+|.|+|
T Consensus 190 ~e~~~~t~~~l~s~~l--------l~~d~~~~~~~~g~~a~dv~~~~~~~~sg~mei~~~------------~~~~~~~~ 249 (1516)
T KOG1832|consen 190 HEGAPDTEVLLASPRL--------LVRDRDLSKISDGRNAEDVTVCLGKMKSGIMEIERE------------TKNITDLV 249 (1516)
T ss_pred hcCCCCCcccccCCcc--------cccchhhhhccccccchhhhhccchhcccceEEeec------------ccchhhHH
Confidence 9999999999999854 389999999999999999999999999999999998 89999999
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHhhhhhHHHHHhhhhhhhcccCchhHHHHHHhhhhhhHhhccccceecccccccCccc
Q 000177 432 KKAVRAAEAEARAANAPLEAIKAAGDAAAEVVKSAASEEFKTTNDEDAALLAASRAASTVIDAADAVEVSRNSISNNVDS 511 (1922)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1922)
++||.+||.| | ++||+.|.||||||||++| +||+|+|||++++ |||| |||||..+
T Consensus 250 ~r~~~~~~~e-~-~~~~~~~~~~~gd~~~~~~-~~~~~~f~ss~~~--------------~~~~---e~s~~~~s----- 304 (1516)
T KOG1832|consen 250 KRAVGAAETE-R-AHAPDDAAKAAGDAAAELV-TAALEEFKSSGSE--------------IDAA---EVSRNVTS----- 304 (1516)
T ss_pred HHhhccCCcc-c-cCCCcchhhhcccHHHHHH-HHHHhhccCCCcc--------------hhHH---HHhccccc-----
Confidence 9999999999 4 4999999999999999999 9999999999998 6666 99999655
Q ss_pred ccccccccccccccccccccChHHHHHHHHHHHHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchh
Q 000177 512 VSVSVTETETNEDVEEYFIPDVESLAQLREKYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLP 591 (1922)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~q~~~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~ 591 (1922)
+...+|.+...||.++|++++||||||||+|||||||+| |||+++|+++|+.|+.+- ...++.+|+|
T Consensus 305 --------~~t~~v~~~~~~~~~~~~~~~~~~~~q~l~~lgey~e~l-pv~~~~g~~~~~~~~~~~----~q~~d~~l~~ 371 (1516)
T KOG1832|consen 305 --------DQTTDVSEVSLPDIESLAQLQEKYCIQCLEILGEYVEVL-PVLHEKGVDVCIVLLERT----SQLDDSPLLP 371 (1516)
T ss_pred --------ccCccccccccccccchHHHHHHHHHHHHHHHHhHHHHH-HHHHHhCchhhhhhhhhh----hccccccccH
Confidence 778899999999999999999999999999999999999 999999999999988763 3347789999
Q ss_pred hHHHHHHHHhhhhhhHHHHhccccchhhhccCCCcccccccceeeehhcchhhHHHHhhcCChhhHHHHHHHHHHHHhcC
Q 000177 592 DVMKLICALAAHRKFAALFVDRGGMQKLLAVPRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECT 671 (1922)
Q Consensus 592 eaLk~l~aLl~HkKfA~eFV~~gGlq~LL~vPR~s~a~tgvS~Clyylay~~~aMERvC~lp~~vl~~lV~yaLwLLecs 671 (1922)
||||+||+|++|||||++||++|||||||.|||+|+||+|||+|||||+|+|++|||||++|.-||+++|+||||||+||
T Consensus 372 ~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs 451 (1516)
T KOG1832|consen 372 DVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCS 451 (1516)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCchhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhhHhhHhhhhcchhHHHHHhhhcccHHHHHHHHhhhhccccccCCCccccCCccCcCCCCCChhhhchhhhHHHH
Q 000177 672 QDQARKNAALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVLTSSEKQIAY 751 (1922)
Q Consensus 672 hds~r~~A~mFF~~sf~Fr~il~~FD~~dGLrkL~N~i~~l~~l~~~~~~~~~~~~~~~~~~~d~~~~e~~~~s~rQ~~~ 751 (1922)
||+||||++|||+++|+||+|||+||+|||||||+|+|++++|+ +++|. |++-+|+..+++|||++
T Consensus 452 ~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~-~~~n~-------------d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 452 QDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASV-TGANT-------------DRSLPEVMISSSKQMAF 517 (1516)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-hccCc-------------CccccHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999 67764 34444555578899999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCC-CCCCCCCcCcccccccCCHHHHHHHHHHhhcccccCcccccCcchHHHHH
Q 000177 752 HTCVALRQYFRAHLLLLVDSIRPNKSNRS-AGRNIPNVRAAYKPLDISNEAIDAVFLQLQKDRKLGPALVRTRWPAVDRF 830 (1922)
Q Consensus 752 h~c~aLR~Yf~aHL~~~v~~~~~~~~~~s-~~~~~~~~~~~~k~~~~s~e~~~~~~~~l~~~r~~~~~~~~~~W~pvd~f 830 (1922)
|||+||||||||||+|||+++|++...+. ++...+..+++|||.+++++++++++++++++|++|+.|+...|++++.|
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 99999999999999999999988765543 44455667789999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHhhhcCCCchhhH---HHHHHHHhccceEEEeecchhhhhhhccccCCcc--chHHHHhhhhccCCC-CCc
Q 000177 831 LSLNGHITLLELCQAPPVERYL---HDLLQYALGVLHIVTLVPNSRKMIVNATLSNNHT--GIAVILDAANAVSSY-VDP 904 (1922)
Q Consensus 831 ~~l~g~~~lL~l~~~~~~~r~~---~e~v~~aL~vL~i~tvvP~~r~~l~~~~~s~~~~--Gi~ilL~~a~~g~~~-~D~ 904 (1922)
++|+|+.+||+||+.+|.|+|+ +|+++|||+||+|+|++|+.|+.|+..+++|++. ||+|||++|+ |+.+ +||
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~-g~~~i~Dp 676 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAAN-GSNSIVDP 676 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccc-ccccccCH
Confidence 9999999999999999999987 9999999999999999999999999999888776 9999999999 8854 599
Q ss_pred cchhHHHHHhhhcccCCCcCCCCCCccccCccccccccCCCCCCCcccccccccccccccccCccccccccccccccccc
Q 000177 905 EIIQPALNVLINLVCPPPSISNKPPLLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVDSSLLDR 984 (1922)
Q Consensus 905 ev~~~AL~Vl~ncVc~P~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 984 (1922)
|||++||+|||||||+||. ++++.+.+ .|+
T Consensus 677 ei~~~AL~vIincVc~pp~--~r~s~i~~----------v~S-------------------------------------- 706 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVCPPPT--TRPSTIVA----------VGS-------------------------------------- 706 (1516)
T ss_pred HHHHHHHhhhheeecCCCC--cchhhhhh----------ccc--------------------------------------
Confidence 9999999999999999984 34332111 010
Q ss_pred CCCcccccccCCCCCCCCCCCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHhhccccCCCCchh
Q 000177 985 GSSANTQLACSTSQTPVPTPTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAAL 1064 (1922)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~e~~~~~~~~~VR~nnGIkvLL~LL~~k~~~Pit~a 1064 (1922)
..||+|+.+|.|.+.+ .+|+.|+|||++||.|||||+||+||+.| .|||+|
T Consensus 707 -----------------------~~g~~r~~l~~~~ks~----~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k--~P~t~a 757 (1516)
T KOG1832|consen 707 -----------------------QSGDRRIFLGAGTKSA----KLEQVLRQMWEAVRGNDGIKILLKLLQYK--NPPTTA 757 (1516)
T ss_pred -----------------------cCCCccccccCCCchH----HHHHHHHHHHHHHhcCccHHHHHHHHhcc--CCCCcH
Confidence 0267788888877654 67999999999999999999999999966 799999
Q ss_pred hHHHHHHHHHHhCccccHHHHHHHHhhcc--hHHHHHHHhccCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCccccc
Q 000177 1065 DCLRALACRVLLGLARDDTIAHILTKLQV--GKKLSELIRDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAA 1142 (1922)
Q Consensus 1065 D~iRaLAcraL~GLaR~~~vrqIlskLpl--~~~lq~Lmr~p~lq~~~~e~~~f~~~f~~~A~eLie~vt~sGk~~~~~a 1142 (1922)
|||||||||+|+||||+++|||||+|||| +.++|+||++|+.++||.+|+.|| |||.+||+++ +|++.+.-+
T Consensus 758 D~IRalAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fc----k~A~~Ll~~~--~g~~lp~~~ 831 (1516)
T KOG1832|consen 758 DCIRALACRVLLGLARDDTVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFC----KLASALLKEA--QGTPLPSSA 831 (1516)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHhCccccchHHHHHhhCcccccchhHHHHHH----HHHHHHHHHH--hCCcCcccc
Confidence 99999999999999999999999999999 479999999999999999999887 6999999999 599876433
Q ss_pred -ccccCchHHHHHHHhhhhccccccChHHHHHHHHHHHHhcCchHHHHHHHHHcCCCCCCCcCCCCccccccccCCCCcc
Q 000177 1143 -TDAATPTLRRIERAAIAAATPISYHSRELLLLIHEHLQASGLVTTAAQLLKEAQLTPLPSLAAPSSLAHQISTQESPSI 1221 (1922)
Q Consensus 1143 -~da~~~sL~~i~RA~IvA~T~I~y~e~ELL~LI~~HL~~~GL~~TA~~L~kEA~L~~~p~l~~p~~~~~~~~~~~~~~~ 1221 (1922)
.+ ..+.+.+|++|+++|+|+|++.|||+|||+||.++||..+|.+|++||.||..| +.....| +|..
T Consensus 832 g~~---~~~~~~~~~~v~~~aq~sfp~~elL~li~~HL~ss~L~~~a~vl~~ea~LP~~~---As~~s~f------TP~~ 899 (1516)
T KOG1832|consen 832 GPS---SIAYSTTQEMVTPLAQESFPSNELLSLIKKHLASSTLEMPAPVLQQEAPLPKIN---ASKQSTF------TPSF 899 (1516)
T ss_pred Ccc---hhhhhhHHhhhhhhhhccCCHHHHHHHHHHHHhhcccCCchhhhhccCCCCCcc---ccccccc------Cccc
Confidence 43 577889999999999999999999999999999999999999999999994432 1111112 1211
Q ss_pred cccCCCCCCCCccCccccccccccccccccCCCccccccccccCCccccccccCCCCCCCCCCcccccccCCCCC-CCCC
Q 000177 1222 QIQWPSGRSPGFLTGKSKLAARDEDISLKCDSSMSSKKKQLVFSPSFNLQSRHQSQSHDSQTPSSRKVFSNSKQS-AVPS 1300 (1922)
Q Consensus 1222 ~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~ 1300 (1922)
..+.|.+ ..-+| .+.++.+-..++. +.+-
T Consensus 900 ~~~~p~S--~~~~p------------------------------------------------~~~~~In~~~~s~~a~~~ 929 (1516)
T KOG1832|consen 900 SSKQPFS--HDALP------------------------------------------------QSTQRINCCSNSDPALAD 929 (1516)
T ss_pred cCCCCCC--CCccc------------------------------------------------hhhhhhhccCCCchhhcc
Confidence 1111221 00000 0000000000000 0000
Q ss_pred cccccccccCCCCCCCCCCCCcCccccccccccccccccccccccccccCCCCCCCCCCCCCchhhccccCCCCCCCCCC
Q 000177 1301 VLEIPHESVSKSNPDTDSQSKTPIALPMKRKLSELKDTGLSLSGKRLHTGDLGLRSPSCPTPNSVRKSSLLNDPQGFSTP 1380 (1922)
Q Consensus 1301 ~~~~~~~~~~~~~~~~~~~~~tp~~~p~~r~~~~~~~~~~~~~~~r~~~~~~~~~s~~c~~~~~~rk~~~~~~~~~~~tp 1380 (1922)
.++......-++..++..++.+|++.|.+++.+.+.++. .|...|.+.....|.++++|
T Consensus 930 ~Se~~a~~a~~~~~~a~~q~p~~~~~p~~~~~s~l~~~~---------------------~p~rer~s~~f~~k~~l~~~ 988 (1516)
T KOG1832|consen 930 TSETAAELALKNDLDADAQFPTPISFPRKRKLSELRDSS---------------------VPGRERRSSTFADKSGLQTP 988 (1516)
T ss_pred cccccchhccCCCCCccccCCCCCCCCcccCCccccCcc---------------------cccccccCCCCcccccccCh
Confidence 000000000112445556777888888888776654221 12222333333445567778
Q ss_pred CCcccccccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCCCCCCcccCCCCCC
Q 000177 1381 GSLAEYLDDNQCGNYHAGQATPSFQLGALNDPQPSNSERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKR 1460 (1922)
Q Consensus 1381 ~s~~~~~d~~q~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~LdsIVtqyLr~QH~qC~~PVtt~PpfSLl~pH~CPePk~ 1460 (1922)
+|. ++.+|.+-.-.| +..|.+|.+.+||+||+||||+||++|+|||+||||||||+||+||+|++
T Consensus 989 ~s~---l~a~~~g~s~~g------------q~~~~~p~~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~ 1053 (1516)
T KOG1832|consen 989 ASA---LDANQSGSSRLG------------QMTPANPERLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKR 1053 (1516)
T ss_pred hhh---cCCCCCCccccc------------cCCCcCCCCCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHH
Confidence 776 666663322222 23466888999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeecccccceecccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000177 1461 SLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS 1540 (1922)
Q Consensus 1461 ~lsAP~N~aaRl~sr~l~~~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t 1540 (1922)
.+.+|.|++.|+.+|.+++.|+|.+|.++++++++++|++|++|+.|. ..++|++|+.+.++|+.|+..|.|++|++.+
T Consensus 1054 ~~~ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~~frd~~-~~fTc~afs~~~~hL~vG~~~Geik~~nv~s 1132 (1516)
T KOG1832|consen 1054 LLEAPLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWRSFRDET-ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS 1132 (1516)
T ss_pred HhhcchhhhhcccchhhcCcccccccCcccchhhHhhcccchhhhccc-cceeeEEeecCCceEEeeeccceEEEEEccC
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCceeeeccCCCCeeEEEeeecCCCcEEEEec---CCcEEEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCC
Q 000177 1541 SSPLESCTSHQAPVTLVQSHLSGETQLLLSSS---SQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDR 1617 (1922)
Q Consensus 1541 gk~l~tL~gHss~VtsLq~afSpDG~lLaSSs---DgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~Dg 1617 (1922)
|.....+.||.++|+.| ..+.||..+++++ .--..+|++.. .+.+.++|.+..++.|+..-..-+.| +...
T Consensus 1133 G~~e~s~ncH~SavT~v--ePs~dgs~~Ltsss~S~PlsaLW~~~s-~~~~~Hsf~ed~~vkFsn~~q~r~~g---t~~d 1206 (1516)
T KOG1832|consen 1133 GSMEESVNCHQSAVTLV--EPSVDGSTQLTSSSSSSPLSALWDASS-TGGPRHSFDEDKAVKFSNSLQFRALG---TEAD 1206 (1516)
T ss_pred ccccccccccccccccc--cccCCcceeeeeccccCchHHHhcccc-ccCccccccccceeehhhhHHHHHhc---cccc
Confidence 99999999999999999 6688898888753 23578999987 47889999999999999864433333 3335
Q ss_pred eEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeeccEEEEcCCCcceeeeccCCCceEEEEecCCCEEEE
Q 000177 1618 GILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVII 1697 (1922)
Q Consensus 1618 tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSggrLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LAS 1697 (1922)
.+.|||++|+..+.++-.+... ..+..+.+.|+|++.+++..|.+||+|....||+|+.++..+...|||+|+.|++
T Consensus 1207 ~a~~YDvqT~~~l~tylt~~~~---~~y~~n~a~FsP~D~LIlndGvLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVII 1283 (1516)
T KOG1832|consen 1207 DALLYDVQTCSPLQTYLTDTVT---SSYSNNLAHFSPCDTLILNDGVLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVII 1283 (1516)
T ss_pred ceEEEecccCcHHHHhcCcchh---hhhhccccccCCCcceEeeCceeeeeccHHHHhhhhhheecccccccCCCceEEe
Confidence 6899999999988884322222 2466778999999999999999999999999999999998789999999999999
Q ss_pred EeEEEecCCCeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCc
Q 000177 1698 NSEVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRC 1777 (1922)
Q Consensus 1698 GSeIWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~ 1777 (1922)
+++|||++|++++++++..+++.|.||..|++||+.. +..+.+..+|++++++|++++|++|++.+|++|+|++++|+
T Consensus 1284 NSEIwD~RTF~lLh~VP~Ldqc~VtFNstG~VmYa~~--~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~ 1361 (1516)
T KOG1832|consen 1284 NSEIWDMRTFKLLHSVPSLDQCAVTFNSTGDVMYAML--NIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRC 1361 (1516)
T ss_pred echhhhhHHHHHHhcCccccceEEEeccCccchhhhh--hhhhhhhhhcccccccchhhhhccccccccccceeeecccc
Confidence 9999999999999999999999999999999999985 55677888999999999999999999999999999999999
Q ss_pred eEEEEEcCCCceEEEEecCCCCCc---cceEEEEEecCCCCCCCCCCCCCCCCCcCccCC
Q 000177 1778 VLDFATERTDSFVGLITMDDQEDM---FSSARIYEIGRRRPTEDDSDPDDAESDEEDEED 1834 (1922)
Q Consensus 1778 I~dLa~SPdds~LAVVe~dds~d~---dSsVRLyEVGr~r~~EDDeDdEDedDeDDDEDD 1834 (1922)
|.|+|.+|.+++++||++.+..++ .+++|+||+||+++.+||+|+||+++++|+|+|
T Consensus 1362 ~~Dlct~~~D~~l~vIe~~~~~d~dq~sT~~r~yEIGR~r~~~dd~DeeeD~e~Ed~dEd 1421 (1516)
T KOG1832|consen 1362 LLDLCTEPTDSFLGVIEMEDQEDMDQFSTSARMYEIGRRRPTDDDSDEEEDDETEDEDED 1421 (1516)
T ss_pred hhhhhcCCccceEEEEeccChhhhhhhhhhhhhhhhcccCCCccccCccccchhhccccc
Confidence 999999999999999998775544 568999999999998877777665555554444
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.8e-32 Score=315.49 Aligned_cols=259 Identities=19% Similarity=0.330 Sum_probs=232.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC--CcEEEEe-cCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE--TQLLLSS-SSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD--G~lLaSS-sDgtVkLWDl~t~~g 1586 (1922)
.+|..|.||.|++.|+|||.+|.++||+..+.+.+.+|.||+..|.++ .|+|. +.-++|+ .||+|++|++.+ .
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~--~fhP~~~~~~lat~s~Dgtvklw~~~~--e 251 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAA--VFHPVDSDLNLATASADGTVKLWKLSQ--E 251 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeE--EEccCCCccceeeeccCCceeeeccCC--C
Confidence 789999999999999999999999999999999999999999999999 78886 5577775 599999999997 6
Q ss_pred CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEe
Q 000177 1587 GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLL 1660 (1922)
Q Consensus 1587 k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLa 1660 (1922)
.++..+.+| ..++|||+|++|+|+ +.|.+.++||+++++.+.... ||...+ ++|+|||.+++
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~Ta---sfD~tWRlWD~~tk~ElL~QE---------GHs~~v~~iaf~~DGSL~~ 319 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTA---SFDSTWRLWDLETKSELLLQE---------GHSKGVFSIAFQPDGSLAA 319 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeec---ccccchhhcccccchhhHhhc---------ccccccceeEecCCCceee
Confidence 889999987 679999999999999 889999999999988766443 666555 99999999999
Q ss_pred ecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEcc-C
Q 000177 1661 WNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNA-R 1726 (1922)
Q Consensus 1661 Sgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSP-d 1726 (1922)
|+| +|||+|+|++|..|.+|...| +|.|+|||..||+|| +|||++..+.+.++++|.+ +.|.|+| .
T Consensus 320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 999 999999999999999999999 999999999999999 6999999999999999998 8999999 7
Q ss_pred CCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceE
Q 000177 1727 GDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSA 1805 (1922)
Q Consensus 1727 G~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsV 1805 (1922)
|.+|++++ ++...++|...+++++.+... +..|..+.+++++.+|+... .|.++
T Consensus 400 g~fL~Tas-------------------yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s------~DRT~ 454 (459)
T KOG0272|consen 400 GYFLVTAS-------------------YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSS------FDRTI 454 (459)
T ss_pred CeEEEEcc-------------------cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEec------cCcee
Confidence 88888885 566778888899999888876 55699999999999998653 55788
Q ss_pred EEEE
Q 000177 1806 RIYE 1809 (1922)
Q Consensus 1806 RLyE 1809 (1922)
++|.
T Consensus 455 KLW~ 458 (459)
T KOG0272|consen 455 KLWR 458 (459)
T ss_pred eecc
Confidence 8884
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=292.06 Aligned_cols=281 Identities=19% Similarity=0.304 Sum_probs=234.7
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce-eeeccCCCCeeEEEe---eecCCC
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL-ESCTSHQAPVTLVQS---HLSGET 1565 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l-~tL~gHss~VtsLq~---afSpDG 1565 (1922)
.|-|...+-.|..++++|. ..|.|++|+|||++||+|+.||+|++||..+|+++ ..+.+|...|++++| ...|..
T Consensus 139 vR~WD~~TeTp~~t~KgH~-~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~ 217 (480)
T KOG0271|consen 139 VRLWDLDTETPLFTCKGHK-NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPC 217 (480)
T ss_pred EEeeccCCCCcceeecCCc-cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCc
Confidence 3444456677899999999 99999999999999999999999999999998776 578999999999965 344577
Q ss_pred cEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc
Q 000177 1566 QLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL 1640 (1922)
Q Consensus 1566 ~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~ 1640 (1922)
++|++++ ||+|+|||+.. ++++..+.+| +|+.|--+| +|+++ +.|++|++|+...|++...+.
T Consensus 218 r~las~skDg~vrIWd~~~--~~~~~~lsgHT~~VTCvrwGG~g-liySg---S~DrtIkvw~a~dG~~~r~lk------ 285 (480)
T KOG0271|consen 218 RRLASSSKDGSVRIWDTKL--GTCVRTLSGHTASVTCVRWGGEG-LIYSG---SQDRTIKVWRALDGKLCRELK------ 285 (480)
T ss_pred cceecccCCCCEEEEEccC--ceEEEEeccCccceEEEEEcCCc-eEEec---CCCceEEEEEccchhHHHhhc------
Confidence 7888854 99999999987 8899999987 789997654 67888 999999999999999988886
Q ss_pred cCCCCcceEEEE-----------cCCCCe-------------------------Eeecc-----EEEEcCC-Ccceeeec
Q 000177 1641 TGRGHAYSQIHF-----------SPSDTM-------------------------LLWNG-----ILWDRRN-SVPVHRFD 1678 (1922)
Q Consensus 1641 ~~~gh~~~vVaF-----------SPdG~l-------------------------LaSgg-----rLWDlrt-gk~I~kf~ 1678 (1922)
+|+|-++.++. .|.++. +++++ .+|+... .+++.+..
T Consensus 286 -GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt 364 (480)
T KOG0271|consen 286 -GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT 364 (480)
T ss_pred -ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh
Confidence 44555555444 455554 88877 8999875 45999999
Q ss_pred cCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhccccc
Q 000177 1679 QFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRV 1750 (1922)
Q Consensus 1679 gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ 1750 (1922)
+|...| .+.||||+++|+++| ++||.++|+.+.++.||-. ..|+|+.|.+.|++++
T Consensus 365 gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S---------------- 428 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGS---------------- 428 (480)
T ss_pred chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcC----------------
Confidence 999988 999999999999999 7999999999999999977 8999999999999995
Q ss_pred ccCCcceEEEEecCCCceeeeec-cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEE
Q 000177 1751 KHPLFAAFRTVDAINYSDIATIP-VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1751 ksp~~ssFrt~Da~dys~IaTid-vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyE 1809 (1922)
.++.+++|+..+-+...... ....|+.+.|+|+|..++ +...+.++|+|.
T Consensus 429 ---kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~------sggkdkv~~lw~ 479 (480)
T KOG0271|consen 429 ---KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA------SGGKDKVLRLWR 479 (480)
T ss_pred ---CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee------cCCCceEEEeec
Confidence 34567788877766655555 355699999999999877 455668889884
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.4e-29 Score=288.22 Aligned_cols=279 Identities=15% Similarity=0.264 Sum_probs=237.5
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtV 1576 (1922)
++....+.||. +.|.|++|+|+|..|+||+.|.++++||+.+..+..+.++|...|.|| +|+|||+.|++|+ ||+|
T Consensus 105 trCssS~~GH~-e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcv--awsPDgk~iASG~~dg~I 181 (480)
T KOG0271|consen 105 TRCSSSIAGHG-EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCV--AWSPDGKKIASGSKDGSI 181 (480)
T ss_pred ceeccccCCCC-CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEE--EECCCcchhhccccCCeE
Confidence 34556788999 999999999999999999999999999999999999999999999999 8999999999965 9999
Q ss_pred EEeccCCCCCCc-ceEeccc----eeEEEcC-----CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1577 HLWNASSIAGGP-MHSFEGC----KAARFSN-----SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1577 kLWDl~t~~gk~-l~tf~gh----~sVaFSP-----DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++||..+ +++ ...|.+| ++++|.| ..++|+++ +.||.|+|||+..+.++.++. +|.
T Consensus 182 ~lwdpkt--g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~---skDg~vrIWd~~~~~~~~~ls---------gHT 247 (480)
T KOG0271|consen 182 RLWDPKT--GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASS---SKDGSVRIWDTKLGTCVRTLS---------GHT 247 (480)
T ss_pred EEecCCC--CCcccccccCcccceeEEeecccccCCCccceecc---cCCCCEEEEEccCceEEEEec---------cCc
Confidence 9999988 544 4667776 7899987 46789998 999999999999999999987 777
Q ss_pred ceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EE-----------EEecCCCE-------------
Q 000177 1647 YSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GG-----------GFHPAGNE------------- 1694 (1922)
Q Consensus 1647 ~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sV-----------aFSPdG~~------------- 1694 (1922)
..+ +.|--+ .++.+++ ++|+...|++++.+.+|..+| .+ +|.|.|++
T Consensus 248 ~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 248 ASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred cceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 665 666543 3667777 999999999999999998877 33 56676666
Q ss_pred ------------EEEEeE-----EEecCC-CeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCC
Q 000177 1695 ------------VIINSE-----VWDLRK-FRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPL 1754 (1922)
Q Consensus 1695 ------------LASGSe-----IWDLrT-gklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~ 1754 (1922)
+++|+. +|+-.. .+++..+.+|.. +.|.||||+++|++++ |
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS-------------------F 387 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS-------------------F 387 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee-------------------c
Confidence 999994 898754 458888899988 8999999999999996 6
Q ss_pred cceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCCCCCCCC
Q 000177 1755 FAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRRPTEDD 1819 (1922)
Q Consensus 1755 ~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~r~~EDD 1819 (1922)
+.+++.|+..+.+-++++.. -..|+.++|+.+.+.+. +...|+++++|+|..++...|-
T Consensus 388 DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlV------S~SkDsTLKvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 388 DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLV------SGSKDSTLKVWDVRTKKLKQDL 447 (480)
T ss_pred ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEE------EcCCCceEEEEEeeeeeecccC
Confidence 77889999999999998874 45699999999988766 3556789999999888765543
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.2e-28 Score=285.12 Aligned_cols=238 Identities=18% Similarity=0.235 Sum_probs=212.8
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEE
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGD--SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQ 1558 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPD--G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq 1558 (1922)
.|+..|....|. ......+++|+||. +.|.++.|+|. +..||||+.||+|++|++.+..++..+.+|...|..+
T Consensus 192 T~swsG~~kvW~--~~~~~~~~~l~gH~-~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~V- 267 (459)
T KOG0272|consen 192 TGSWSGLVKVWS--VPQCNLLQTLRGHT-SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRV- 267 (459)
T ss_pred EeecCCceeEee--cCCcceeEEEeccc-cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheee-
Confidence 344444444444 45568899999999 99999999996 6699999999999999999989999999999999999
Q ss_pred eeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1559 SHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1559 ~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
+|+|+|++|.|+ -|.+-+|||+++ +..+....|| .+++|+|||..+++| +.|..-+|||+++|.++..+
T Consensus 268 -afHPsG~~L~TasfD~tWRlWD~~t--k~ElL~QEGHs~~v~~iaf~~DGSL~~tG---GlD~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 268 -AFHPSGKFLGTASFDSTWRLWDLET--KSELLLQEGHSKGVFSIAFQPDGSLAATG---GLDSLGRVWDLRTGRCIMFL 341 (459)
T ss_pred -eecCCCceeeecccccchhhccccc--chhhHhhcccccccceeEecCCCceeecc---CccchhheeecccCcEEEEe
Confidence 999999999995 599999999998 6666666665 889999999999999 88999999999999999998
Q ss_pred ccccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEec-CCCEEEEEe-----
Q 000177 1634 SDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHP-AGNEVIINS----- 1699 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSP-dG~~LASGS----- 1699 (1922)
. +|...+ +.|+|+|..++|++ +|||++..++++++.+|.+.| .|.|+| .|.+|++++
T Consensus 342 ~---------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 342 A---------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred c---------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcce
Confidence 6 677766 99999999999999 999999999999999999999 899999 788999999
Q ss_pred EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1700 EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1700 eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+||..+++.+++++.||+. .++.++|+|.+|++++.+.
T Consensus 413 kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCc
Confidence 6999999999999999988 7999999999999986333
No 6
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.8e-28 Score=280.57 Aligned_cols=339 Identities=17% Similarity=0.219 Sum_probs=268.5
Q ss_pred CcccccccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCCCCCCcccCCCCCCC
Q 000177 1382 SLAEYLDDNQCGNYHAGQATPSFQLGALNDPQPSNSERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRS 1461 (1922)
Q Consensus 1382 s~~~~~d~~q~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~LdsIVtqyLr~QH~qC~~PVtt~PpfSLl~pH~CPePk~~ 1461 (1922)
.|.++++.++ .|+||..++ |+.||..++.|++..|..+|.+++ +|..++|+.+|+|..-
T Consensus 152 ~R~~ll~els-kyi~p~ill----------------P~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~~--- 210 (519)
T KOG0293|consen 152 ERDKLLDELS-KYIPPNILL----------------PKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGRL--- 210 (519)
T ss_pred hHHHHHHHHH-hhCCHhhcC----------------ChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCcc---
Confidence 5677899999 899999887 689999999999999999998887 6888999999999943
Q ss_pred CCCCCcceeecccccceecccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000177 1462 LDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS 1541 (1922)
Q Consensus 1462 lsAP~N~aaRl~sr~l~~~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg 1541 (1922)
+ -.++..++|..|+ +.||.+.||++|++|||+|+|.+..||.+...
T Consensus 211 --------------q-------------------ip~qt~qil~~ht-dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d 256 (519)
T KOG0293|consen 211 --------------Q-------------------IPSQTWQILQDHT-DEVWFLQFSHNGKYLASASKDSTAIIWIVVYD 256 (519)
T ss_pred --------------c-------------------CCchhhhhHhhCC-CcEEEEEEcCCCeeEeeccCCceEEEEEEecC
Confidence 1 0123356788999 99999999999999999999999999998654
Q ss_pred C---ceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEecc-----ceeEEEcCCCCEEEEeec
Q 000177 1542 S---PLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEG-----CKAARFSNSGNLFAALPT 1612 (1922)
Q Consensus 1542 k---~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~ 1612 (1922)
. ..+++.+|..+|..| .||||.++|++|. |..+++||+.+ +.+.+.+.. ..+++|.|||..|++|
T Consensus 257 ~~~kl~~tlvgh~~~V~yi--~wSPDdryLlaCg~~e~~~lwDv~t--gd~~~~y~~~~~~S~~sc~W~pDg~~~V~G-- 330 (519)
T KOG0293|consen 257 VHFKLKKTLVGHSQPVSYI--MWSPDDRYLLACGFDEVLSLWDVDT--GDLRHLYPSGLGFSVSSCAWCPDGFRFVTG-- 330 (519)
T ss_pred cceeeeeeeecccCceEEE--EECCCCCeEEecCchHheeeccCCc--chhhhhcccCcCCCcceeEEccCCceeEec--
Confidence 3 467889999999999 8999999999965 88899999998 777666642 3789999999999999
Q ss_pred CCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEE
Q 000177 1613 ETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGG 1687 (1922)
Q Consensus 1613 ~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVa 1687 (1922)
+.|+++..||+.. .....+.. .+...+..++.++||+++++.+ ++++..+...+.....+....+.+
T Consensus 331 -s~dr~i~~wdlDg-n~~~~W~g------vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~ 402 (519)
T KOG0293|consen 331 -SPDRTIIMWDLDG-NILGNWEG------VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFS 402 (519)
T ss_pred -CCCCcEEEecCCc-chhhcccc------cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEE
Confidence 8899999999973 44444430 0112244499999999998766 788887765555555554444999
Q ss_pred EecCCCEEEEEe-----EEEecCCCeEEEEEcCCCce----eEEEcc-CCCEEEEEEccCchhhhhhhcccccccCCcce
Q 000177 1688 FHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQT----TITFNA-RGDVIYAILRRNLEDVMSAVHTRRVKHPLFAA 1757 (1922)
Q Consensus 1688 FSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~~----sVaFSP-dG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ss 1757 (1922)
.|.+|++++++- .+||+...++++.+.||.+. .-+|.. +..+|++|+ -++.
T Consensus 403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-------------------ED~k 463 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS-------------------EDSK 463 (519)
T ss_pred EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC-------------------CCce
Confidence 999999998887 49999999999999999872 233443 336676663 2245
Q ss_pred EEEEecCCCceeeeeccC-CceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1758 FRTVDAINYSDIATIPVD-RCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1758 Frt~Da~dys~IaTidvk-r~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
+++|+....+++++.... +.|+.++|+|.+..+-. +...|+++|||..++.
T Consensus 464 vyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~A-----SasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 464 VYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFA-----SASDDGTIRIWGPSDN 515 (519)
T ss_pred EEEEEccCCceeEeecCCcceeeEEecCCCCHHHhh-----ccCCCCeEEEecCCcc
Confidence 788888899999988774 56999999998875432 3344689999987643
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=5.3e-26 Score=256.09 Aligned_cols=272 Identities=19% Similarity=0.278 Sum_probs=228.5
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCc
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQD 1575 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-Dgt 1575 (1922)
.++..++|+||. +.|.++.|++|.++|+++|.||.+.|||..+.+.+..+.-....|..+ +|+|.|+++++|. |+.
T Consensus 44 ~~~~rr~LkGH~-~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtC--A~sPSg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 44 QMRTRRTLKGHL-NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTC--AYSPSGNFVACGGLDNK 120 (343)
T ss_pred eeeeEEEecccc-cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEE--EECCCCCeEEecCcCce
Confidence 355568999999 999999999999999999999999999999999888887778888888 9999999999965 999
Q ss_pred EEEeccCCCC--C--CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1576 VHLWNASSIA--G--GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1576 VkLWDl~t~~--g--k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
..||++.+.. + ...+.+.+| .++.|-+| ..|+|+ +.|.+..+||+++++.+..|. ||..
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~---SGD~TCalWDie~g~~~~~f~---------GH~g 187 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTG---SGDMTCALWDIETGQQTQVFH---------GHTG 187 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEec---CCCceEEEEEcccceEEEEec---------CCcc
Confidence 9999998521 1 234567777 56788775 567888 889999999999999999886 7877
Q ss_pred eE--EEEcC-CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1648 SQ--IHFSP-SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1648 ~v--VaFSP-dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
.+ +.++| +++.+++++ +|||+|.+.++++|.+|..-| ++.|+|+|.-+++|+ ++||+|..+.+..+
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence 76 88899 999999998 999999999999999999999 999999999999999 69999999999888
Q ss_pred cCCCc----eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCc
Q 000177 1714 PSLDQ----TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDS 1788 (1922)
Q Consensus 1714 ~gH~~----~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds 1788 (1922)
..... ++|+||..|++|++++.+.. ..+||......+..... +.+|..+..+|+|.
T Consensus 268 s~~~~~~gitSv~FS~SGRlLfagy~d~~-------------------c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 268 SHDSIICGITSVAFSKSGRLLFAGYDDFT-------------------CNVWDTLKGERVGVLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred ccCcccCCceeEEEcccccEEEeeecCCc-------------------eeEeeccccceEEEeeccCCeeEEEEECCCCc
Confidence 74333 79999999999999964432 23445444444455544 44599999999999
Q ss_pred eEEEEecCCCCCccceEEEEE
Q 000177 1789 FVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1789 ~LAVVe~dds~d~dSsVRLyE 1809 (1922)
-++ +...|+.+|||.
T Consensus 329 av~------TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 AVA------TGSWDSTLRIWA 343 (343)
T ss_pred EEE------ecchhHheeecC
Confidence 877 456788999983
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=2.8e-25 Score=249.39 Aligned_cols=270 Identities=18% Similarity=0.268 Sum_probs=223.2
Q ss_pred eEEecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECC-----CCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecC
Q 000177 1501 WRTCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSN-----SSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSS 1573 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~-----tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsD 1573 (1922)
..+|++|. +.|+.++..+. .+.|++++.|.+|.+|++. .|..++.|.||...|..+ ..++||++.++ |.|
T Consensus 8 ~~tl~gh~-d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv--~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 8 RGTLEGHT-DWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDV--VLSSDGNFALSASWD 84 (315)
T ss_pred eeeecCCC-ceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecce--EEccCCceEEecccc
Confidence 45789999 99999999985 5689999999999999985 466788999999999999 88999999999 569
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc--
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY-- 1647 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~-- 1647 (1922)
+++++||+.+ +++.+.|.+| .+++|++|.+.|++| +.|++|++|++.. .+..++.. ..+..
T Consensus 85 ~~lrlWDl~~--g~~t~~f~GH~~dVlsva~s~dn~qivSG---SrDkTiklwnt~g-~ck~t~~~-------~~~~~WV 151 (315)
T KOG0279|consen 85 GTLRLWDLAT--GESTRRFVGHTKDVLSVAFSTDNRQIVSG---SRDKTIKLWNTLG-VCKYTIHE-------DSHREWV 151 (315)
T ss_pred ceEEEEEecC--CcEEEEEEecCCceEEEEecCCCceeecC---CCcceeeeeeecc-cEEEEEec-------CCCcCcE
Confidence 9999999998 7889999887 789999999999999 9999999999985 44455531 12233
Q ss_pred eEEEEcCC--CCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE-----EEecCCCeEEEEEc
Q 000177 1648 SQIHFSPS--DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE-----VWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1648 ~vVaFSPd--G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe-----IWDLrTgklL~tl~ 1714 (1922)
.++.|+|+ ..+|++++ ++||+++.+..+.|.+|+..+ .+.+||||..+++|++ +||++.++.+.++.
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~ 231 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE 231 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence 44999998 68888888 999999999999999999999 9999999999999995 99999999999998
Q ss_pred CCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc----------CCceEEEEE
Q 000177 1715 SLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV----------DRCVLDFAT 1783 (1922)
Q Consensus 1715 gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv----------kr~I~dLa~ 1783 (1922)
+... ++++|+|+-.+|+++. .+++++||..+-..+.+... ...-..++|
T Consensus 232 a~~~v~sl~fspnrywL~~at--------------------~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaw 291 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLCAAT--------------------ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAW 291 (315)
T ss_pred CCCeEeeEEecCCceeEeecc--------------------CCceEEEeccchhhhhhccccccccccccCCcEEEEEEE
Confidence 6665 8999999998888872 23455555544443333322 223567899
Q ss_pred cCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1784 ERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1784 SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+++|..+-. +..++.+|+|+|.+
T Consensus 292 s~dG~tLf~------g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 292 SADGQTLFA------GYTDNVIRVWQVAK 314 (315)
T ss_pred cCCCcEEEe------eecCCcEEEEEeec
Confidence 999987662 45668999999864
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=3e-25 Score=249.13 Aligned_cols=228 Identities=18% Similarity=0.337 Sum_probs=195.2
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
...+.+.+.|+||. -.|..+..++||++.+++|.|+++++||+.+++..+.|.||...|.++ +|++|++.|++++ |
T Consensus 50 ~~~G~~~r~~~GHs-H~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsv--a~s~dn~qivSGSrD 126 (315)
T KOG0279|consen 50 IKYGVPVRRLTGHS-HFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSV--AFSTDNRQIVSGSRD 126 (315)
T ss_pred cccCceeeeeeccc-eEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEE--EecCCCceeecCCCc
Confidence 34467889999999 999999999999999999999999999999999999999999999999 8999999999966 9
Q ss_pred CcEEEeccCCCCCCcceEecc------ceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG------CKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g------h~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
.+|++||+. +.+..++.. +.|+.|+|+ ..+|+++ +.|++|++||+++.+...++. ++.+
T Consensus 127 kTiklwnt~---g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~---s~DktvKvWnl~~~~l~~~~~-------gh~~ 193 (315)
T KOG0279|consen 127 KTIKLWNTL---GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA---SWDKTVKVWNLRNCQLRTTFI-------GHSG 193 (315)
T ss_pred ceeeeeeec---ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc---cCCceEEEEccCCcchhhccc-------cccc
Confidence 999999997 567766644 479999997 6788888 999999999999988877764 2344
Q ss_pred cceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEc--
Q 000177 1646 AYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVP-- 1714 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~-- 1714 (1922)
..+.+++||||.+++++| .+||++.++.++.+.......+++|+|+-.+|+.+. +|||+.+..++..+.
T Consensus 194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccc
Confidence 455599999999999998 899999999998886544333999999999888776 799999988877665
Q ss_pred --CC-----Cc--eeEEEccCCCEEEEEEccCc
Q 000177 1715 --SL-----DQ--TTITFNARGDVIYAILRRNL 1738 (1922)
Q Consensus 1715 --gH-----~~--~sVaFSPdG~~LaSgs~~d~ 1738 (1922)
+. .. .+++|+++|..|++++.++.
T Consensus 274 ~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 274 GIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred ccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 22 11 58999999999999976554
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=5e-25 Score=256.22 Aligned_cols=266 Identities=16% Similarity=0.280 Sum_probs=223.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~ 1588 (1922)
..|..|.|.|+|+.|++|+..|.+.+|+..+......++.|.++|+++ .|++++.++++|+ +|.||+|+..- ..
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m--~ws~~g~wmiSgD~gG~iKyWqpnm---nn 171 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTM--KWSHNGTWMISGDKGGMIKYWQPNM---NN 171 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeE--EEccCCCEEEEcCCCceEEecccch---hh
Confidence 569999999999999999999999999987766666779999999999 8899999999986 89999999874 34
Q ss_pred ceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1589 MHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1589 l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
+..++. +++++|+|+...|+++ +.|++|+|||....+....+. +++..+.++.|+|.-.+|+++|
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~---SdDg~ikiWdf~~~kee~vL~-------GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTC---SDDGTIKIWDFRMPKEERVLR-------GHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEe---cCCCeEEEEeccCCchhheec-------cCCCCcceeccCCccceeEEcc
Confidence 445544 4899999999999999 999999999999888776664 5667777899999999999999
Q ss_pred -----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEE
Q 000177 1664 -----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVI 1730 (1922)
Q Consensus 1664 -----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~L 1730 (1922)
++||.++|.++.++.+|.+.| .+.|+|++++|+++| +++|+++-+.+.++.+|.. +++.|+|-..-|
T Consensus 242 kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence 999999999999999999999 999999999999999 4999999999999999987 899999988777
Q ss_pred EEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc--CCceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1731 YAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV--DRCVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1731 aSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv--kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
++.... +.++..+......++..+.. ...|++++|+|-|..++. ...+..+|.|
T Consensus 322 ftsgg~------------------Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~t------gsnd~t~rfw 377 (464)
T KOG0284|consen 322 FTSGGS------------------DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILAT------GSNDRTVRFW 377 (464)
T ss_pred eeeccC------------------CCceEEEeccccccccCCCcccccceeeeeccccceeEee------cCCCcceeee
Confidence 765332 23344444444455555554 557999999999999985 3345789999
Q ss_pred EecCCC
Q 000177 1809 EIGRRR 1814 (1922)
Q Consensus 1809 EVGr~r 1814 (1922)
.-+|..
T Consensus 378 ~r~rp~ 383 (464)
T KOG0284|consen 378 TRNRPG 383 (464)
T ss_pred ccCCCC
Confidence 754443
No 11
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=8.7e-23 Score=225.51 Aligned_cols=269 Identities=22% Similarity=0.377 Sum_probs=220.4
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEe
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLW 1579 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLW 1579 (1922)
+++|++|. +.|++++|+|++++|++|+.||.|++|++.+++....+.+|...+..+ .|++++++++++ .|+.|++|
T Consensus 2 ~~~~~~h~-~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHT-GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDV--AASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccC-CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEE--EECCCCCEEEEEcCCCeEEEE
Confidence 35678999 999999999999999999999999999999998888899999999999 889999888875 59999999
Q ss_pred ccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1580 NASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
|+.. ++.+..+.. +.++.|+|++++++++ +.|+.|++||+.+++....+. .+......+.|+|+
T Consensus 79 ~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~ 146 (289)
T cd00200 79 DLET--GECVRTLTGHTSYVSSVAFSPDGRILSSS---SRDKTIKVWDVETGKCLTTLR-------GHTDWVNSVAFSPD 146 (289)
T ss_pred EcCc--ccceEEEeccCCcEEEEEEcCCCCEEEEe---cCCCeEEEEECCCcEEEEEec-------cCCCcEEEEEEcCc
Confidence 9987 566666654 4789999998888887 678999999999888877765 11223555999999
Q ss_pred CCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEE
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTIT 1722 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVa 1722 (1922)
+.++++++ ++||+++++++..+..|...+ ++.|+|+++.+++++ .+||+++++.+..+..|.. .++.
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 226 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEE
Confidence 99888764 899999999999999888777 999999998888887 4999999999988877764 7999
Q ss_pred EccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCc
Q 000177 1723 FNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDM 1801 (1922)
Q Consensus 1723 FSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~ 1801 (1922)
|+|++.+++++.. ...+++|+..+...+..+.. ...|..++|+|++.++++.. .
T Consensus 227 ~~~~~~~~~~~~~-------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~ 281 (289)
T cd00200 227 FSPDGYLLASGSE-------------------DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS------A 281 (289)
T ss_pred EcCCCcEEEEEcC-------------------CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEec------C
Confidence 9999888888731 23456666665666555543 34699999999998887653 3
Q ss_pred cceEEEEE
Q 000177 1802 FSSARIYE 1809 (1922)
Q Consensus 1802 dSsVRLyE 1809 (1922)
++.+++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 35677774
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.92 E-value=2e-24 Score=267.61 Aligned_cols=192 Identities=23% Similarity=0.344 Sum_probs=179.0
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
.-..+++.||+ ++|..+.|+|+.++|+++|.|++|++|.+.+..++..++||..||+.+ .|+|-|.+++|+ .|++.
T Consensus 441 ~~~~~~L~GH~-GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV--~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 441 SGTSRTLYGHS-GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV--QFAPRGYYFATASHDQTA 517 (707)
T ss_pred CceeEEeecCC-CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeE--EecCCceEEEecCCCcee
Confidence 34456799999 999999999999999999999999999999999999999999999999 789999999995 59999
Q ss_pred EEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--E
Q 000177 1577 HLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--I 1650 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--V 1650 (1922)
+||.... ..+++.|.+| .|+.|||+..++++| +.|++|++||+.+|..+..|. ||..++ +
T Consensus 518 rLWs~d~--~~PlRifaghlsDV~cv~FHPNs~Y~aTG---SsD~tVRlWDv~~G~~VRiF~---------GH~~~V~al 583 (707)
T KOG0263|consen 518 RLWSTDH--NKPLRIFAGHLSDVDCVSFHPNSNYVATG---SSDRTVRLWDVSTGNSVRIFT---------GHKGPVTAL 583 (707)
T ss_pred eeeeccc--CCchhhhcccccccceEEECCcccccccC---CCCceEEEEEcCCCcEEEEec---------CCCCceEEE
Confidence 9999987 7889998886 789999999999999 999999999999999999996 677666 9
Q ss_pred EEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCC
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT 1706 (1922)
+|||+|++|++++ ++||+.+++++..+.+|.+.+ ++.|+.+|..||+|+ ++||+..
T Consensus 584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 584 AFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999 999999999999999998888 999999999999999 6999875
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=6e-24 Score=243.63 Aligned_cols=274 Identities=18% Similarity=0.264 Sum_probs=230.1
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
..++..+++.+|. +.|.|+++.|-.++++||+.|++|+|||+.+|+...++.||-..|..+ ++|+-..|++++ .|+
T Consensus 139 apwKl~rVi~gHl-gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~v--avS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 139 APWKLYRVISGHL-GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGV--AVSKRHPYLFSAGEDK 215 (460)
T ss_pred Ccceehhhhhhcc-ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeee--eecccCceEEEecCCC
Confidence 3456678889999 999999999999999999999999999999999999999999999999 889999999995 699
Q ss_pred cEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE-
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ- 1649 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v- 1649 (1922)
.|+-||+.. .+.++.+.|| .|++.+|.-+.|++| +.|.+++|||+++...+.++. ||...+
T Consensus 216 ~VKCwDLe~--nkvIR~YhGHlS~V~~L~lhPTldvl~t~---grDst~RvWDiRtr~~V~~l~---------GH~~~V~ 281 (460)
T KOG0285|consen 216 QVKCWDLEY--NKVIRHYHGHLSGVYCLDLHPTLDVLVTG---GRDSTIRVWDIRTRASVHVLS---------GHTNPVA 281 (460)
T ss_pred eeEEEechh--hhhHHHhccccceeEEEeccccceeEEec---CCcceEEEeeecccceEEEec---------CCCCcce
Confidence 999999998 7888887776 889999999999999 899999999999999999986 676665
Q ss_pred -EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCCCeEEEEEcCCCc
Q 000177 1650 -IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1650 -VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH~~ 1718 (1922)
+.+.|.+..+++++ ++||++.|+...++..|...+ +++.||....+++++ +-|++..+..++.+.+|..
T Consensus 282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~ 361 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNA 361 (460)
T ss_pred eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccc
Confidence 88899999999988 999999999999999999888 999999999999999 6899999999999999987
Q ss_pred --eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceee------eeccCCceEEEEEcCCCceE
Q 000177 1719 --TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIA------TIPVDRCVLDFATERTDSFV 1790 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~Ia------Tidvkr~I~dLa~SPdds~L 1790 (1922)
++++.+.|| ++++| .++....+|.. -+..+|+... +++.+..|+..+|+..+..|
T Consensus 362 iintl~~nsD~-v~~~G-~dng~~~fwdw---------------ksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 362 IINTLSVNSDG-VLVSG-GDNGSIMFWDW---------------KSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred eeeeeeeccCc-eEEEc-CCceEEEEEec---------------CcCcccccccccccCCccccccceeEEeecccCceE
Confidence 788888886 44444 23322221111 1233444443 33456789999999999988
Q ss_pred EEEecCCCCCccceEEEEE
Q 000177 1791 GLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1791 AVVe~dds~d~dSsVRLyE 1809 (1922)
... +.+..+++|+
T Consensus 425 it~------eadKtIk~~k 437 (460)
T KOG0285|consen 425 ITG------EADKTIKMYK 437 (460)
T ss_pred Eec------cCCcceEEEe
Confidence 754 4557788885
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.92 E-value=3.9e-24 Score=264.97 Aligned_cols=218 Identities=21% Similarity=0.344 Sum_probs=193.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------------------------------CceeeeccCCCCeeEEE
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSS-------------------------------SPLESCTSHQAPVTLVQ 1558 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg-------------------------------k~l~tL~gHss~VtsLq 1558 (1922)
..++|+.|++|+++||.|-.|..|++|.+... ...+++.||.++|+.+
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~- 457 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC- 457 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee-
Confidence 57999999999999999999999999998631 1134678999999999
Q ss_pred eeecCCCcEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1559 SHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1559 ~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
.|+|+.++|++|+ |++|+||.+.+ ..++-.++|| +.+.|+|-|-+|+++ +.|++.++|.....+.+..|
T Consensus 458 -sFsPd~rfLlScSED~svRLWsl~t--~s~~V~y~GH~~PVwdV~F~P~GyYFata---s~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 458 -SFSPDRRFLLSCSEDSSVRLWSLDT--WSCLVIYKGHLAPVWDVQFAPRGYYFATA---SHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred -eecccccceeeccCCcceeeeeccc--ceeEEEecCCCcceeeEEecCCceEEEec---CCCceeeeeecccCCchhhh
Confidence 9999999999976 99999999998 7888888887 679999999999999 99999999999987777766
Q ss_pred ccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEE
Q 000177 1634 SDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVW 1702 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIW 1702 (1922)
. ++-..+.++.|+|+..|+++++ ++||+.+|..++.|.||...| +++|||+|++|++|+ .||
T Consensus 532 a-------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 532 A-------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred c-------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEE
Confidence 4 2333456699999999999999 999999999999999999999 999999999999999 499
Q ss_pred ecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhh
Q 000177 1703 DLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDV 1741 (1922)
Q Consensus 1703 DLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv 1741 (1922)
|+.+++++..+.+|.. +++.||.+|.+|++++.++...+
T Consensus 605 Dl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 605 DLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred EcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEE
Confidence 9999999999999976 79999999999999965554333
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=5.4e-23 Score=256.61 Aligned_cols=272 Identities=20% Similarity=0.341 Sum_probs=228.3
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
..++.+|....|+|+.|+++|++|++++.|+.|++|+..+++ ....+.+|...|+.+ .|+|++++++++ .|++|+
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~--~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDV--AFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeee--EECCCCcEEEEecCCceEE
Confidence 455656532889999999999999999999999999998877 778889999999999 899999999996 499999
Q ss_pred EeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc--ceEEE
Q 000177 1578 LWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA--YSQIH 1651 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~--~~vVa 1651 (1922)
|||+.. .+..++++.+| ++++|+|+|+.+++| +.|++|+|||+++++++..+. +|. +..++
T Consensus 229 iwd~~~-~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sg---s~D~tvriWd~~~~~~~~~l~---------~hs~~is~~~ 295 (456)
T KOG0266|consen 229 IWDLKD-DGRNLKTLKGHSTYVTSVAFSPDGNLLVSG---SDDGTVRIWDVRTGECVRKLK---------GHSDGISGLA 295 (456)
T ss_pred EeeccC-CCeEEEEecCCCCceEEEEecCCCCEEEEe---cCCCcEEEEeccCCeEEEeee---------ccCCceEEEE
Confidence 999943 25788999987 889999999999999 899999999999999999997 454 44499
Q ss_pred EcCCCCeEeecc-----EEEEcCCCc--ceeeeccCCCc--e-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSV--PVHRFDQFTDH--G-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk--~I~kf~gh~~~--V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
|+++|++|++++ ++||+.++. ++..+.++... + ++.|+|+|.++++++ ++||++.++.+..+.+|
T Consensus 296 f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~ 375 (456)
T KOG0266|consen 296 FSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH 375 (456)
T ss_pred ECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc
Confidence 999999999888 999999998 67888887776 5 999999999999999 59999999999999988
Q ss_pred Cce-----eEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC--CceEEEEEcCCCce
Q 000177 1717 DQT-----TITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD--RCVLDFATERTDSF 1789 (1922)
Q Consensus 1717 ~~~-----sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk--r~I~dLa~SPdds~ 1789 (1922)
... +..+++.|.+++++.. +..+.+|+..+...+..+... ..+..++|+|...+
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~sg~~-------------------d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~ 436 (456)
T KOG0266|consen 376 SNLVRCIFSPTLSTGGKLIYSGSE-------------------DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENL 436 (456)
T ss_pred CCcceeEecccccCCCCeEEEEeC-------------------CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCe
Confidence 772 4455778999999852 334666776665555555554 56899999999999
Q ss_pred EEEEecCCCCCccceEEEEEe
Q 000177 1790 VGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1790 LAVVe~dds~d~dSsVRLyEV 1810 (1922)
++... ...+..+++|..
T Consensus 437 ~~s~s----~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 437 IASSS----FEGDGLIRLWKY 453 (456)
T ss_pred eeecC----cCCCceEEEecC
Confidence 88653 334578899964
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.9e-23 Score=239.31 Aligned_cols=274 Identities=16% Similarity=0.219 Sum_probs=233.0
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cC
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SS 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sD 1573 (1922)
..++...+.+.+|. ..|+.+-|+|+-..+++++.|++|++||..+|+++..++||++.|..| +|+..|++|+++ +|
T Consensus 95 ipRp~l~~~l~g~r-~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di--~~~a~Gk~l~tcSsD 171 (406)
T KOG0295|consen 95 IPRPNLVQKLAGHR-SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDI--SFDASGKYLATCSSD 171 (406)
T ss_pred CCCCCchhhhhccc-cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEE--EEecCccEEEecCCc
Confidence 34555566778999 999999999999999999999999999999999999999999999999 899999999995 48
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
-.+++||..+. .+++..+.+| .++.|-|.|.+|+++ +.|++|+.|++.++-++.+|. +|..++
T Consensus 172 l~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~---srD~tik~We~~tg~cv~t~~---------~h~ewv 238 (406)
T KOG0295|consen 172 LSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSC---SRDNTIKAWECDTGYCVKTFP---------GHSEWV 238 (406)
T ss_pred cchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeec---ccccceeEEecccceeEEecc---------CchHhE
Confidence 88999999862 4556666554 789999999999999 999999999999999999997 777776
Q ss_pred --EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecC---------------CCEEEEEe-----EE
Q 000177 1650 --IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPA---------------GNEVIINS-----EV 1701 (1922)
Q Consensus 1650 --VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPd---------------G~~LASGS-----eI 1701 (1922)
+..+.||.++++++ ++|-+.++++...+..|...+ +++|-|. |.++.+++ ++
T Consensus 239 r~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 239 RMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred EEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 89999999999999 999999999988999999998 8888763 35888888 59
Q ss_pred EecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC-ce
Q 000177 1702 WDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR-CV 1778 (1922)
Q Consensus 1702 WDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr-~I 1778 (1922)
||+.++.++.++.+|++ +.++|+|.|+||++... +.++++||-.+.....+..... -+
T Consensus 319 wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD-------------------Dktlrvwdl~~~~cmk~~~ah~hfv 379 (406)
T KOG0295|consen 319 WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD-------------------DKTLRVWDLKNLQCMKTLEAHEHFV 379 (406)
T ss_pred EeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec-------------------CCcEEEEEeccceeeeccCCCccee
Confidence 99999999999999999 69999999999999842 2457788877777776666533 36
Q ss_pred EEEEEcCCCceEEEEecCCCCCccceEEEEE
Q 000177 1779 LDFATERTDSFVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1779 ~dLa~SPdds~LAVVe~dds~d~dSsVRLyE 1809 (1922)
..+.++.+-.++. ++..+..+++|+
T Consensus 380 t~lDfh~~~p~Vv------TGsVdqt~KvwE 404 (406)
T KOG0295|consen 380 TSLDFHKTAPYVV------TGSVDQTVKVWE 404 (406)
T ss_pred EEEecCCCCceEE------eccccceeeeee
Confidence 7777777666533 355668889987
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=1e-22 Score=230.59 Aligned_cols=260 Identities=18% Similarity=0.260 Sum_probs=214.8
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEE
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN-SSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVH 1577 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~-tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVk 1577 (1922)
|+-.+.+|. +.|+++.|+|+|.+|+||+.|..|.+|++. ..+...++++|.++|..+ .|.+|+..|++ |.|.+|+
T Consensus 39 p~m~l~gh~-geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l--~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 39 PIMLLPGHK-GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMEL--HGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred hhhhcCCCc-ceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEee--eeccCCCEEEEecCCceEE
Confidence 455678899 999999999999999999999999999964 344566789999999999 88999999998 5699999
Q ss_pred EeccCCCCCCcceEecccee----EEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1578 LWNASSIAGGPMHSFEGCKA----ARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh~s----VaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
.||+++ +++++.+++|+. +.-+.-|. ++.++ +.|+++++||+++..+++++. ..++...++|
T Consensus 116 ~wD~~t--G~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg---sdD~t~kl~D~R~k~~~~t~~--------~kyqltAv~f 182 (338)
T KOG0265|consen 116 GWDAET--GKRIRKHKGHTSFVNSLDPSRRGPQLVCSG---SDDGTLKLWDIRKKEAIKTFE--------NKYQLTAVGF 182 (338)
T ss_pred EEeccc--ceeeehhccccceeeecCccccCCeEEEec---CCCceEEEEeecccchhhccc--------cceeEEEEEe
Confidence 999999 999999998733 33222244 44454 899999999999999999886 3467777999
Q ss_pred cCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCC----eEEEEEcCCC
Q 000177 1653 SPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKF----RLLRSVPSLD 1717 (1922)
Q Consensus 1653 SPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTg----klL~tl~gH~ 1717 (1922)
..++..+.+++ ++||++.+...+.+.||.+.| .+..+|+|.++.+.+ ++||++-+ +++..+.+|.
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 99999999999 999999999999999999999 999999999999999 69999864 4577777765
Q ss_pred c------eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceE
Q 000177 1718 Q------TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFV 1790 (1922)
Q Consensus 1718 ~------~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~L 1790 (1922)
- -.++|+|+++.+.+++.+ ....+||......+..... ...|..+.++|...+|
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~d-------------------r~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~ii 323 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSAD-------------------RFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPII 323 (338)
T ss_pred hhhhhhcceeeccCCCCcccccccc-------------------ceEEEeecccccEEEEcCCcceeEEEeeecCCCcEE
Confidence 4 488999999999998522 2345666665555555554 3458999999999988
Q ss_pred EEEe
Q 000177 1791 GLIT 1794 (1922)
Q Consensus 1791 AVVe 1794 (1922)
..+.
T Consensus 324 ls~~ 327 (338)
T KOG0265|consen 324 LSCS 327 (338)
T ss_pred EEec
Confidence 8764
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=4.2e-22 Score=244.07 Aligned_cols=229 Identities=17% Similarity=0.313 Sum_probs=200.3
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHT-KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~D-GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
-|.+..|..++.+.--. ..|..+.|+..|.+|+.|+.. |.+-||++++...+...++|...++++ .++|||++++|
T Consensus 291 LyelP~f~lih~LSis~-~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l--~YSpDgq~iaT 367 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISD-QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSL--AYSPDGQLIAT 367 (893)
T ss_pred EEecCCceEEEEeeccc-ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeE--EECCCCcEEEe
Confidence 45678888898887654 679999999999999998865 899999999999888999999999999 89999999999
Q ss_pred e-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1571 S-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
| .|++|+|||..+ +-|+.+|..| +.+.|+..|+.+++. +-||+|+.||+..+.+..+|..|.. -
T Consensus 368 G~eDgKVKvWn~~S--gfC~vTFteHts~Vt~v~f~~~g~~llss---SLDGtVRAwDlkRYrNfRTft~P~p------~ 436 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQS--GFCFVTFTEHTSGVTAVQFTARGNVLLSS---SLDGTVRAWDLKRYRNFRTFTSPEP------I 436 (893)
T ss_pred ccCCCcEEEEeccC--ceEEEEeccCCCceEEEEEEecCCEEEEe---ecCCeEEeeeecccceeeeecCCCc------e
Confidence 5 599999999998 8899999876 679999999999998 8999999999999999999974332 2
Q ss_pred cceEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCC-eEEEE
Q 000177 1646 AYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKF-RLLRS 1712 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTg-klL~t 1712 (1922)
+-.+++..|.|.++..++ .+|++++|+.+-.+.||.++| +++|+|.|..|+++| ++||+-.. ..+.+
T Consensus 437 QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt 516 (893)
T KOG0291|consen 437 QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVET 516 (893)
T ss_pred eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeee
Confidence 345599999999999888 899999999999999999999 899999999999999 69998543 34455
Q ss_pred Ec-CCCceeEEEccCCCEEEEEE
Q 000177 1713 VP-SLDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1713 l~-gH~~~sVaFSPdG~~LaSgs 1734 (1922)
+. .|+...++|+|+|+-|+++.
T Consensus 517 l~i~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 517 LEIRSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred EeeccceeEEEEcCCCCeEEEEE
Confidence 55 35558999999999999874
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.90 E-value=2e-22 Score=227.45 Aligned_cols=220 Identities=15% Similarity=0.246 Sum_probs=193.1
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------CceeeeccCCCCeeEEEeeecCCCcEEEEecC
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS------SPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg------k~l~tL~gHss~VtsLq~afSpDG~lLaSSsD 1573 (1922)
..+.++-.+ ..|..|+|+|.|+++|.|+-|....||++.+. +..+.+.+|++.+.++ .|.+|+++|.+|.|
T Consensus 89 K~haipl~s-~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC--~f~dD~~ilT~SGD 165 (343)
T KOG0286|consen 89 KVHAIPLPS-SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCC--RFLDDNHILTGSGD 165 (343)
T ss_pred ceeEEecCc-eeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEE--EEcCCCceEecCCC
Confidence 344455556 88999999999999999999999999999754 3456789999999999 78888888888889
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
.++.+||+++ ++.+..|.+| .++.++| +++.|++| +-|++.++||++.+.++++|. ++...++
T Consensus 166 ~TCalWDie~--g~~~~~f~GH~gDV~slsl~p~~~ntFvSg---~cD~~aklWD~R~~~c~qtF~-------ghesDIN 233 (343)
T KOG0286|consen 166 MTCALWDIET--GQQTQVFHGHTGDVMSLSLSPSDGNTFVSG---GCDKSAKLWDVRSGQCVQTFE-------GHESDIN 233 (343)
T ss_pred ceEEEEEccc--ceEEEEecCCcccEEEEecCCCCCCeEEec---ccccceeeeeccCcceeEeec-------ccccccc
Confidence 9999999999 8999999997 6799999 89999999 889999999999999999996 2333455
Q ss_pred EEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCC--Cce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC
Q 000177 1649 QIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFT--DHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~--~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g 1715 (1922)
.+.|.|+|.-+++++ ++||+|..+.+..|.... .++ +++||..|++|..|. .+||.-.++.+..+.|
T Consensus 234 sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G 313 (343)
T KOG0286|consen 234 SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG 313 (343)
T ss_pred eEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec
Confidence 699999999999998 999999999988887443 234 999999999999987 4999999999999999
Q ss_pred CCc--eeEEEccCCCEEEEEE
Q 000177 1716 LDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSgs 1734 (1922)
|.+ .++..+|||..+++++
T Consensus 314 HeNRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 314 HENRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred cCCeeEEEEECCCCcEEEecc
Confidence 998 7999999999999984
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.90 E-value=2.6e-22 Score=236.90 Aligned_cols=248 Identities=15% Similarity=0.265 Sum_probs=214.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~ 1588 (1922)
..|++++|+.+|.+||+|+.||.++||+. +|..+.+|..|.+||.+| .|+.+|.||++++ |+++.|||..+ +..
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~sl--KWnk~G~yilS~~vD~ttilwd~~~--g~~ 310 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSL--KWNKKGTYILSGGVDGTTILWDAHT--GTV 310 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEE--EEcCCCCEEEeccCCccEEEEeccC--ceE
Confidence 57999999999999999999999999997 688889999999999999 7899999999965 99999999988 667
Q ss_pred ceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEeec
Q 000177 1589 MHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWN 1662 (1922)
Q Consensus 1589 l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSg 1662 (1922)
...|.-| ..|.|-.+ ..|+++ +.|+.|++|-+....++.++. +|...+ +.|+|.|.+|+++
T Consensus 311 ~q~f~~~s~~~lDVdW~~~-~~F~ts---~td~~i~V~kv~~~~P~~t~~---------GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSN-DEFATS---STDGCIHVCKVGEDRPVKTFI---------GHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred EEeeeeccCCccceEEecC-ceEeec---CCCceEEEEEecCCCcceeee---------cccCceEEEEECCCCceEEEe
Confidence 6666654 45778765 456777 889999999999888888886 565554 9999999999999
Q ss_pred c-----EEEEcCCCcceeeeccCCCce-EEEEecCC---------CEEEEEe-----EEEecCCCeEEEEEcCCCc--ee
Q 000177 1663 G-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAG---------NEVIINS-----EVWDLRKFRLLRSVPSLDQ--TT 1720 (1922)
Q Consensus 1663 g-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG---------~~LASGS-----eIWDLrTgklL~tl~gH~~--~s 1720 (1922)
+ +||......+++.|+.|...| .+.|+|.| ..+++++ ++||+..+.+++++..|.. .+
T Consensus 378 SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS 457 (524)
T ss_pred cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE
Confidence 8 999999999999999999888 89999865 3567766 6999999999999988876 89
Q ss_pred EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEe
Q 000177 1721 ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe 1794 (1922)
|+|+|+|+++++|. ++..+.+|+...++...+......|+.++|+..|.++++..
T Consensus 458 vafS~~g~ylAsGs-------------------~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 458 VAFSPNGRYLASGS-------------------LDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred EEecCCCcEEEecC-------------------CCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEe
Confidence 99999999999995 44566777778888888887778899999999999988764
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=217.02 Aligned_cols=226 Identities=16% Similarity=0.274 Sum_probs=188.9
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEEe-c
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLSS-S 1572 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaSS-s 1572 (1922)
.+++.+++++.. ++.|+.+...||++.||+++.. .|++||+++++ ++.+|.+|+..|+.| .|..+|+.+.+| .
T Consensus 28 ~tG~C~rTiqh~-dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV--gF~~dgrWMyTgse 103 (311)
T KOG0315|consen 28 LTGICSRTIQHP-DSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV--GFQCDGRWMYTGSE 103 (311)
T ss_pred hcCeEEEEEecC-ccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE--EEeecCeEEEecCC
Confidence 455667777544 4999999999999999999875 69999999875 588999999999999 889999999996 4
Q ss_pred CCcEEEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
||+++|||++. ..+-+.|+ .++++..+|+...|++| ..+|.|++||+.+..+...+-+. ..-....
T Consensus 104 Dgt~kIWdlR~--~~~qR~~~~~spVn~vvlhpnQteLis~---dqsg~irvWDl~~~~c~~~liPe------~~~~i~s 172 (311)
T KOG0315|consen 104 DGTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPNQTELISG---DQSGNIRVWDLGENSCTHELIPE------DDTSIQS 172 (311)
T ss_pred CceEEEEeccC--cccchhccCCCCcceEEecCCcceEEee---cCCCcEEEEEccCCccccccCCC------CCcceee
Confidence 99999999998 44444443 36999999999899998 88899999999988776655411 1334555
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCC------cceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCC-eEEE
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNS------VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKF-RLLR 1711 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtg------k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTg-klL~ 1711 (1922)
++..|||.+++... ++|++-+. .++++|+.|+..+ .+.|||++++|+++| +||+..++ ++-.
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~ 252 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL 252 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence 99999999998655 89998764 4788999999988 999999999999999 69999987 7777
Q ss_pred EEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1712 SVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
++.+|.. |..+||.+|.||++++.+
T Consensus 253 ~l~gh~rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 253 VLTGHQRWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred EeecCCceEEeeeeccCccEEEecCCC
Confidence 8889966 899999999999999644
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=4.9e-23 Score=244.04 Aligned_cols=271 Identities=14% Similarity=0.206 Sum_probs=215.1
Q ss_pred CceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CCceeeeccCCCCeeEEEeeecCCCcEEEEe-cC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNS-SSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SS 1573 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~t-gk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sD 1573 (1922)
.-+.++++.||. ..|+++.|.| .+.+|++|+.|+.|+||++.. +.++++|.||..+|..+ .|+++|.-++|+ -|
T Consensus 203 Pkk~~~~~~gH~-kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~--~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 203 PKKLSHNLSGHT-KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDA--SFNNCGTSFLSASFD 279 (503)
T ss_pred cHhheeeccCCc-cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhh--hccccCCeeeeeecc
Confidence 345678899999 9999999999 899999999999999999976 89999999999999999 899999988885 59
Q ss_pred CcEEEeccCCCCCCcceEecc---ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc--
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG---CKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY-- 1647 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~-- 1647 (1922)
+.|++||+++ |+++..|.. .+|+.|+|++ +.|++| +.|+.|+.||+++++.++.+. .|-.
T Consensus 280 ~~lKlwDtET--G~~~~~f~~~~~~~cvkf~pd~~n~fl~G---~sd~ki~~wDiRs~kvvqeYd---------~hLg~i 345 (503)
T KOG0282|consen 280 RFLKLWDTET--GQVLSRFHLDKVPTCVKFHPDNQNIFLVG---GSDKKIRQWDIRSGKVVQEYD---------RHLGAI 345 (503)
T ss_pred eeeeeecccc--ceEEEEEecCCCceeeecCCCCCcEEEEe---cCCCcEEEEeccchHHHHHHH---------hhhhhe
Confidence 9999999999 999988865 3899999988 788888 889999999999999888775 3333
Q ss_pred eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce--EEEEecCCCEEEEEe---E--EEecCC---CeEEEE
Q 000177 1648 SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG--GGGFHPAGNEVIINS---E--VWDLRK---FRLLRS 1712 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V--sVaFSPdG~~LASGS---e--IWDLrT---gklL~t 1712 (1922)
..+.|-++|+.+++.+ ++|+.+.+.+++....+.... ++..||++++++.=+ . ++.+.. ...-+.
T Consensus 346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~ 425 (503)
T KOG0282|consen 346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKR 425 (503)
T ss_pred eeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhh
Confidence 3499999999999887 999999988776554444433 899999999988766 1 333321 233455
Q ss_pred EcCCCc----eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC-CceEEEEEcCCC
Q 000177 1713 VPSLDQ----TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD-RCVLDFATERTD 1787 (1922)
Q Consensus 1713 l~gH~~----~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk-r~I~dLa~SPdd 1787 (1922)
+.||.. +.|.|||||.+|++|..+ ..+.+||-.+-+.+..+... ..+..+.|+|..
T Consensus 426 feGh~vaGys~~v~fSpDG~~l~SGdsd-------------------G~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 426 FEGHSVAGYSCQVDFSPDGRTLCSGDSD-------------------GKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred hcceeccCceeeEEEcCCCCeEEeecCC-------------------ccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 677766 799999999999999422 23445555555555555554 568899999965
Q ss_pred c-eEEEEecCCCCCccceEEEEE
Q 000177 1788 S-FVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1788 s-~LAVVe~dds~d~dSsVRLyE 1809 (1922)
. .+|. ...++.|++|+
T Consensus 487 ~Skvat------~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVAT------CGWDGLIKIWD 503 (503)
T ss_pred cceeEe------cccCceeEecC
Confidence 5 4443 33567888884
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=8.9e-22 Score=245.72 Aligned_cols=221 Identities=23% Similarity=0.367 Sum_probs=194.6
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDS-NSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl-~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
..+++.+|. ..|++++|+|+|++|++|+.|++|+|||+ ..+..++++.+|...|+++ +|+|+++++++| .|++|+
T Consensus 195 ~~~~l~~h~-~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~--~f~p~g~~i~Sgs~D~tvr 271 (456)
T KOG0266|consen 195 LLRELSGHT-RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSV--AFSPDGNLLVSGSDDGTVR 271 (456)
T ss_pred hhccccccc-cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEE--EecCCCCEEEEecCCCcEE
Confidence 677778999 99999999999999999999999999999 6668999999999999999 899999999995 599999
Q ss_pred EeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc--eeeeeccccccccCCCC-cceEE
Q 000177 1578 LWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQ--LEAKLSDTSVNLTGRGH-AYSQI 1650 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk--~i~tL~d~s~~~~~~gh-~~~vV 1650 (1922)
|||+++ ++++..+.+| .+++|++++++|+++ +.|+.|+|||+.++. +...+.. .... ....+
T Consensus 272 iWd~~~--~~~~~~l~~hs~~is~~~f~~d~~~l~s~---s~d~~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~ 340 (456)
T KOG0266|consen 272 IWDVRT--GECVRKLKGHSDGISGLAFSPDGNLLVSA---SYDGTIRVWDLETGSKLCLKLLSG------AENSAPVTSV 340 (456)
T ss_pred EEeccC--CeEEEeeeccCCceEEEEECCCCCEEEEc---CCCccEEEEECCCCceeeeecccC------CCCCCceeEE
Confidence 999998 8999999886 789999999999998 889999999999999 4555541 0112 35569
Q ss_pred EEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce----EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG----GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V----sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
.|+|++.+++++. ++||++.++++..+.+|...+ +..+++.|.++++|+ .+||+.++..+..+.+|
T Consensus 341 ~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 341 QFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred EECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 9999999999887 999999999999999998753 556688999999999 49999999999999999
Q ss_pred -Cc--eeEEEccCCCEEEEEE
Q 000177 1717 -DQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1717 -~~--~sVaFSPdG~~LaSgs 1734 (1922)
.. ..+.|+|...++++..
T Consensus 421 ~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 421 SKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred CCCceeccccCCCcCeeeecC
Confidence 44 6899999999999874
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.88 E-value=2.3e-21 Score=229.11 Aligned_cols=238 Identities=19% Similarity=0.302 Sum_probs=204.3
Q ss_pred ecccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEE
Q 000177 1479 STYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQ 1558 (1922)
Q Consensus 1479 ~~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq 1558 (1922)
..+|..+|..+.| ...+..+.+|..|. ++|.+++|+.+|++|++|+.|+++.|||..++.....|.-|..+-..|
T Consensus 250 LatG~~~G~~riw---~~~G~l~~tl~~Hk-gPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDV- 324 (524)
T KOG0273|consen 250 LATGSEDGEARIW---NKDGNLISTLGQHK-GPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDV- 324 (524)
T ss_pred EEEeecCcEEEEE---ecCchhhhhhhccC-CceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccce-
Confidence 4455554443322 45777888999999 999999999999999999999999999999999999999999887788
Q ss_pred eeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1559 SHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1559 ~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
.|-.+..+..++.|+.|+|+.+.. ..|+.+|.+| .++.|+|.|..|+++ +.|++++||.+....+...+.
T Consensus 325 -dW~~~~~F~ts~td~~i~V~kv~~--~~P~~t~~GH~g~V~alk~n~tg~LLaS~---SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 325 -DWQSNDEFATSSTDGCIHVCKVGE--DRPVKTFIGHHGEVNALKWNPTGSLLASC---SDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred -EEecCceEeecCCCceEEEEEecC--CCcceeeecccCceEEEEECCCCceEEEe---cCCCeeEeeecCCCcchhhhh
Confidence 566676777777899999999987 7899999987 789999999999999 999999999998888877775
Q ss_pred cccccccCCCCcce--EEEEcCCC---------CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEE
Q 000177 1635 DTSVNLTGRGHAYS--QIHFSPSD---------TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1635 d~s~~~~~~gh~~~--vVaFSPdG---------~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LAS 1697 (1922)
.|... .+.|+|+| ..+++++ ++||+..+.++++|.+|..+| +++|+|+|.|+++
T Consensus 399 ---------~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs 469 (524)
T KOG0273|consen 399 ---------AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS 469 (524)
T ss_pred ---------hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence 55544 48888876 3455555 999999999999999999999 9999999999999
Q ss_pred Ee-----EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEcc
Q 000177 1698 NS-----EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1698 GS-----eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~ 1736 (1922)
|+ .||+.+++++++++.+... ..++||.+|+.|.+...+
T Consensus 470 Gs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 470 GSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred cCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence 99 4999999999999998777 899999999999887533
No 25
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.88 E-value=2.1e-21 Score=220.16 Aligned_cols=238 Identities=20% Similarity=0.309 Sum_probs=202.4
Q ss_pred cccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEe
Q 000177 1480 TYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQS 1559 (1922)
Q Consensus 1480 ~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~ 1559 (1922)
..||.+...+.|+. +...+..-++++|+ +.|..+.|.+|++.|++++.|++|+.||+++|+..+.+++|...|+++
T Consensus 63 aSgG~Dr~I~LWnv-~gdceN~~~lkgHs-gAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~-- 138 (338)
T KOG0265|consen 63 ASGGSDRAIVLWNV-YGDCENFWVLKGHS-GAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSL-- 138 (338)
T ss_pred eecCCcceEEEEec-cccccceeeecccc-ceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeec--
Confidence 34455444444443 55566667788999 999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcEEEE-e-cCCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1560 HLSGETQLLLS-S-SSQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1560 afSpDG~lLaS-S-sDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
..+.-|..+++ + .|++++|||+++ ..+++++.. .+++.|.-++..+++| +-|+.|++||++.+....++.
T Consensus 139 ~p~rrg~~lv~SgsdD~t~kl~D~R~--k~~~~t~~~kyqltAv~f~d~s~qv~sg---gIdn~ikvWd~r~~d~~~~ls 213 (338)
T KOG0265|consen 139 DPSRRGPQLVCSGSDDGTLKLWDIRK--KEAIKTFENKYQLTAVGFKDTSDQVISG---GIDNDIKVWDLRKNDGLYTLS 213 (338)
T ss_pred CccccCCeEEEecCCCceEEEEeecc--cchhhccccceeEEEEEecccccceeec---cccCceeeeccccCcceEEee
Confidence 55556666665 3 599999999998 677777743 4889999999999999 889999999999999999886
Q ss_pred cccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCC----CcceeeeccCCCce-----EEEEecCCCEEEEE
Q 000177 1635 DTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRN----SVPVHRFDQFTDHG-----GGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1635 d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrt----gk~I~kf~gh~~~V-----sVaFSPdG~~LASG 1698 (1922)
||...+ +..+|+|.++++.+ ++||++- .+++..|.+|...+ .++|+|++.++..|
T Consensus 214 ---------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ag 284 (338)
T KOG0265|consen 214 ---------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAG 284 (338)
T ss_pred ---------cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccc
Confidence 777766 89999999999988 9999994 34688898876443 78999999999988
Q ss_pred e-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1699 S-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1699 S-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
+ -+||..+...+..++||.. +++.|+|...+|.+++.
T Consensus 285 s~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 285 SADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred cccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence 8 3999998899999999987 89999999999998853
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.88 E-value=2.6e-20 Score=246.96 Aligned_cols=275 Identities=15% Similarity=0.186 Sum_probs=202.4
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----C----ceeeeccCCCCeeEEEeeecC-CCcEEEEe-cC
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS----S----PLESCTSHQAPVTLVQSHLSG-ETQLLLSS-SS 1573 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg----k----~l~tL~gHss~VtsLq~afSp-DG~lLaSS-sD 1573 (1922)
+..|. +.|++++|+|+|++|++|+.|++|+||++.+. . ....+. +...|.++ .|++ ++.+|+++ .|
T Consensus 479 ~~~~~-~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l--~~~~~~~~~las~~~D 554 (793)
T PLN00181 479 LLNSS-NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGI--CWNSYIKSQVASSNFE 554 (793)
T ss_pred ccCCC-CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeE--EeccCCCCEEEEEeCC
Confidence 34588 99999999999999999999999999997542 1 122333 35678999 6665 46777775 59
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
++|+|||+.+ ++.+..+.+| ++++|+| ++.+|++| +.|++|++||++++.++.++. ......
T Consensus 555 g~v~lWd~~~--~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg---s~Dg~v~iWd~~~~~~~~~~~--------~~~~v~ 621 (793)
T PLN00181 555 GVVQVWDVAR--SQLVTEMKEHEKRVWSIDYSSADPTLLASG---SDDGSVKLWSINQGVSIGTIK--------TKANIC 621 (793)
T ss_pred CeEEEEECCC--CeEEEEecCCCCCEEEEEEcCCCCCEEEEE---cCCCEEEEEECCCCcEEEEEe--------cCCCeE
Confidence 9999999987 7777788765 7899997 78999999 889999999999998888775 123445
Q ss_pred EEEEc-CCCCeEeecc-----EEEEcCCCc-ceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCC------CeE
Q 000177 1649 QIHFS-PSDTMLLWNG-----ILWDRRNSV-PVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK------FRL 1709 (1922)
Q Consensus 1649 vVaFS-PdG~lLaSgg-----rLWDlrtgk-~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT------gkl 1709 (1922)
++.|+ ++|.+|++++ ++||+++++ ++..+.+|...+ ++.|. ++.+|++++ +|||+++ +++
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~ 700 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETP 700 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcc
Confidence 58884 5788999877 999999876 678888999888 88997 678888888 5999974 367
Q ss_pred EEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceee---eeccCCceEEEEEc
Q 000177 1710 LRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIA---TIPVDRCVLDFATE 1784 (1922)
Q Consensus 1710 L~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~Ia---Tidvkr~I~dLa~S 1784 (1922)
++++.+|.. +++.|+|+|.+|++++.++...+|... .+ .....+.......+. .......|.+++|+
T Consensus 701 l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~------~~--~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws 772 (793)
T PLN00181 701 LHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA------FP--MPVLSYKFKTIDPVSGLEVDDASQFISSVCWR 772 (793)
T ss_pred eEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC------CC--CceEEEecccCCcccccccCCCCcEEEEEEEc
Confidence 888999877 789999999999999654433332110 00 000001100011111 11223459999999
Q ss_pred CCCceEEEEecCCCCCccceEEEEEe
Q 000177 1785 RTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1785 Pdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
|++..+++.. .++.+++|++
T Consensus 773 ~~~~~lva~~------~dG~I~i~~~ 792 (793)
T PLN00181 773 GQSSTLVAAN------STGNIKILEM 792 (793)
T ss_pred CCCCeEEEec------CCCcEEEEec
Confidence 9999877653 3467899974
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.88 E-value=1.2e-22 Score=236.45 Aligned_cols=223 Identities=14% Similarity=0.251 Sum_probs=186.3
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc-CCCCeeEEEeeecCCCcEEEE-ecCCcEEEe
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS-HQAPVTLVQSHLSGETQLLLS-SSSQDVHLW 1579 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-Hss~VtsLq~afSpDG~lLaS-SsDgtVkLW 1579 (1922)
..+..|. +.|+++.|+++|.+++||+.+|.||+|+.+-.. ++.+.+ |...|+++ +|+|+...+++ |+|++|+||
T Consensus 132 tilQaHD-s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdl--afSpnDskF~t~SdDg~ikiW 207 (464)
T KOG0284|consen 132 TILQAHD-SPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDL--AFSPNDSKFLTCSDDGTIKIW 207 (464)
T ss_pred HHhhhhc-ccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhhee--ccCCCCceeEEecCCCeEEEE
Confidence 3457899 999999999999999999999999999985444 455554 45999999 88987776666 569999999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEc
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFS 1653 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFS 1653 (1922)
|... .+....+.+| +++.|||....|+++ +.|+.|++||.+++.|+.++. +|...+ +.|+
T Consensus 208 df~~--~kee~vL~GHgwdVksvdWHP~kgLiasg---skDnlVKlWDprSg~cl~tlh---------~HKntVl~~~f~ 273 (464)
T KOG0284|consen 208 DFRM--PKEERVLRGHGWDVKSVDWHPTKGLIASG---SKDNLVKLWDPRSGSCLATLH---------GHKNTVLAVKFN 273 (464)
T ss_pred eccC--CchhheeccCCCCcceeccCCccceeEEc---cCCceeEeecCCCcchhhhhh---------hccceEEEEEEc
Confidence 9987 6666777876 899999999999998 899999999999999999885 666665 9999
Q ss_pred CCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCC-EEEEEe-----EEEecCCCeEEEEEc-CCCc--
Q 000177 1654 PSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGN-EVIINS-----EVWDLRKFRLLRSVP-SLDQ-- 1718 (1922)
Q Consensus 1654 PdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~-~LASGS-----eIWDLrTgklL~tl~-gH~~-- 1718 (1922)
|++++|++++ +++|+++-+.+.+|.+|...+ ++.|||-.. .+.+|+ ..|.+...+++..++ +|+.
T Consensus 274 ~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~i 353 (464)
T KOG0284|consen 274 PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEI 353 (464)
T ss_pred CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccce
Confidence 9999999999 999999999999999999988 999999654 555555 378887666666665 6665
Q ss_pred eeEEEccCCCEEEEEEccCchhhh
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVM 1742 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~ 1742 (1922)
++++|+|-|.+|++++++....++
T Consensus 354 wsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 354 WSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred eeeeccccceeEeecCCCcceeee
Confidence 899999999999998655544443
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.88 E-value=9.6e-21 Score=210.17 Aligned_cols=253 Identities=13% Similarity=0.216 Sum_probs=205.2
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc----ee
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC----KA 1597 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh----~s 1597 (1922)
-+|+|+|+|.+|++|...+|.|.++++-..+.|+.+ ...|++++|+++....|++||+++....|+.+|.+| ..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrL--eiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRL--EITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeE--EEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEE
Confidence 489999999999999999999999999888999999 889999999999999999999998666689999886 78
Q ss_pred EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCc
Q 000177 1598 ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSV 1672 (1922)
Q Consensus 1598 VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk 1672 (1922)
+.|.-+|+.+++| +.||+++|||++.-.+...+. +..+++.+..+|+...|+++. ++||++...
T Consensus 89 VgF~~dgrWMyTg---seDgt~kIWdlR~~~~qR~~~--------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 89 VGFQCDGRWMYTG---SEDGTVKIWDLRSLSCQRNYQ--------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred EEEeecCeEEEec---CCCceEEEEeccCcccchhcc--------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence 9999999999999 999999999999977766665 345666799999988888766 999999887
Q ss_pred ceeeeccCC-Cce-EEEEecCCCEEEEEe-----EEEecCCC------eEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1673 PVHRFDQFT-DHG-GGGFHPAGNEVIINS-----EVWDLRKF------RLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1673 ~I~kf~gh~-~~V-sVaFSPdG~~LASGS-----eIWDLrTg------klL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+.+.+.... ..+ ++..+|+|.+++.+. -+|++-+. +++..++.|.. ..+.+||++++|++++.+.
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk 237 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK 237 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc
Confidence 666554332 344 899999999998877 29998653 46677788877 6889999999999985333
Q ss_pred chhhhhhhcccccccCCcceEEEEecCCC-ceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1738 LEDVMSAVHTRRVKHPLFAAFRTVDAINY-SDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1738 ~~dv~s~lh~rr~ksp~~ssFrt~Da~dy-s~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
..++|...++ +.-..++. .+=++|.+||.++.||...+ .+..+|+|++..
T Consensus 238 -------------------tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTas------sd~~~rlW~~~~ 289 (311)
T KOG0315|consen 238 -------------------TVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTAS------SDHTARLWDLSA 289 (311)
T ss_pred -------------------eEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecC------CCCceeeccccc
Confidence 3455655555 33333333 34599999999999988653 347899998743
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.9e-21 Score=224.50 Aligned_cols=229 Identities=19% Similarity=0.331 Sum_probs=203.8
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CCceeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS-SSPLESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t-gk~l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
+.|.+.++...+.|+||. +.|..++|+..|++|+++|.|-.+++||.++ .++++.+.+|...|.++ .|-|.|.+|+
T Consensus 133 kv~D~~tg~~e~~LrGHt-~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V--~f~P~gd~il 209 (406)
T KOG0295|consen 133 KVFDTETGELERSLRGHT-DSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSV--FFLPLGDHIL 209 (406)
T ss_pred EEEEccchhhhhhhhccc-cceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeE--EEEecCCeee
Confidence 345566677789999999 8899999999999999999999999999987 57888899999999999 8889999999
Q ss_pred Ee-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1570 SS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1570 SS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
++ .|.+|+.|++.+ +-++.+|.+| +.+..+.||..++++ +.|.++++|-+.+++|...+. .+.
T Consensus 210 S~srD~tik~We~~t--g~cv~t~~~h~ewvr~v~v~~DGti~As~---s~dqtl~vW~~~t~~~k~~lR-------~hE 277 (406)
T KOG0295|consen 210 SCSRDNTIKAWECDT--GYCVKTFPGHSEWVRMVRVNQDGTIIASC---SNDQTLRVWVVATKQCKAELR-------EHE 277 (406)
T ss_pred ecccccceeEEeccc--ceeEEeccCchHhEEEEEecCCeeEEEec---CCCceEEEEEeccchhhhhhh-------ccc
Confidence 95 499999999999 8999999987 678888899999999 899999999999998877664 356
Q ss_pred CcceEEEEcCC---------------CCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----
Q 000177 1645 HAYSQIHFSPS---------------DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS---- 1699 (1922)
Q Consensus 1645 h~~~vVaFSPd---------------G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS---- 1699 (1922)
|.+.+++|-|. ++++.+++ ++||+.+|.++.++.+|.++| .++|||.|+||+++.
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT 357 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc
Confidence 77777888763 24666766 999999999999999999999 999999999999998
Q ss_pred -EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1700 -EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1700 -eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
++||+++.++++++..|.. +++.|+.+-.++++|+
T Consensus 358 lrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 358 LRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred EEEEEeccceeeeccCCCcceeEEEecCCCCceEEecc
Confidence 5999999999999998876 8999999999999984
No 30
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=7.6e-21 Score=212.22 Aligned_cols=273 Identities=17% Similarity=0.288 Sum_probs=216.5
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee--eccCCCCeeEEEeeecCC-CcEEEE-ecCCcEE
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGE-TQLLLS-SSSQDVH 1577 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpD-G~lLaS-SsDgtVk 1577 (1922)
+.+++|. ..|.+++|+-+|..|++|+.|+++++|+++....... +.+|++.|-.++ |+|. ..++++ +.|.+|+
T Consensus 14 r~~~~~~-~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~--w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 14 RELQGHV-QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLC--WDPKHPDLFATASGDKTIR 90 (313)
T ss_pred HHhhhhh-hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhhe--eCCCCCcceEEecCCceEE
Confidence 4567899 9999999999999999999999999999988765544 489999999994 4443 334444 7899999
Q ss_pred EeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC
Q 000177 1578 LWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
+||++. ++++..... ...+.|+|+|.+++.+ +.|..|.+.|.++.+.....+ .....+-++|+.
T Consensus 91 ~wd~r~--~k~~~~i~~~~eni~i~wsp~g~~~~~~---~kdD~it~id~r~~~~~~~~~--------~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 91 IWDIRS--GKCTARIETKGENINITWSPDGEYIAVG---NKDDRITFIDARTYKIVNEEQ--------FKFEVNEISWNN 157 (313)
T ss_pred EEEecc--CcEEEEeeccCcceEEEEcCCCCEEEEe---cCcccEEEEEecccceeehhc--------ccceeeeeeecC
Confidence 999998 888877643 4678999999999999 889999999999988776654 223344488887
Q ss_pred CCCeEe-ecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeE
Q 000177 1655 SDTMLL-WNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTI 1721 (1922)
Q Consensus 1655 dG~lLa-Sgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sV 1721 (1922)
++.+++ +.| .|-....-+++..++.|.... ++.|+|+|+|+|+|+ .+||+...-+++.+.-++- ..+
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTl 237 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTL 237 (313)
T ss_pred CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEE
Confidence 776655 555 677777889999999998655 999999999999999 4999998888888887765 899
Q ss_pred EEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCC--
Q 000177 1722 TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQE-- 1799 (1922)
Q Consensus 1722 aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~-- 1799 (1922)
.||.+|++|++++.+-..+ +-+..+...+..+....+.+.++|+|+...||-...+..+
T Consensus 238 SFS~dg~~lASaSEDh~ID-------------------IA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~ 298 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFID-------------------IAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDS 298 (313)
T ss_pred EeccCcceeeccCccceEE-------------------eEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCcc
Confidence 9999999999995333222 2334456667777788889999999999999987644322
Q ss_pred -CccceEEEEE
Q 000177 1800 -DMFSSARIYE 1809 (1922)
Q Consensus 1800 -d~dSsVRLyE 1809 (1922)
-..+.+++|-
T Consensus 299 ~reag~vKiFG 309 (313)
T KOG1407|consen 299 NREAGTVKIFG 309 (313)
T ss_pred ccccceeEEec
Confidence 2235677774
No 31
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5.9e-21 Score=236.03 Aligned_cols=291 Identities=18% Similarity=0.227 Sum_probs=221.3
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S 1571 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S 1571 (1922)
|.|.-...+..|.+|. ++|..+.|+|++.++++|+.|-.|+||+..+.+++.++.||-..|..+ .|++.-.+|++ |
T Consensus 36 WDYRM~tli~rFdeHd-GpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~--~FHheyPWIlSAS 112 (1202)
T KOG0292|consen 36 WDYRMGTLIDRFDEHD-GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTV--FFHHEYPWILSAS 112 (1202)
T ss_pred ehhhhhhHHhhhhccC-CccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEe--eccCCCceEEEcc
Confidence 3455556677788999 999999999999999999999999999999999999999999999999 88999999999 5
Q ss_pred cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee---------------
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK--------------- 1632 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t--------------- 1632 (1922)
+|.||+||++++ .+++..+.|| .|..|||....++++ +-|.+|+|||+..-+....
T Consensus 113 DDQTIrIWNwqs--r~~iavltGHnHYVMcAqFhptEDlIVSa---SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~ 187 (1202)
T KOG0292|consen 113 DDQTIRIWNWQS--RKCIAVLTGHNHYVMCAQFHPTEDLIVSA---SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN 187 (1202)
T ss_pred CCCeEEEEeccC--CceEEEEecCceEEEeeccCCccceEEEe---cccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence 699999999998 8999999997 578999999999999 8999999999863111100
Q ss_pred ---ec--cccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCc--ceeeeccCCCce-EEEEecCCCEEEE
Q 000177 1633 ---LS--DTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSV--PVHRFDQFTDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1633 ---L~--d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk--~I~kf~gh~~~V-sVaFSPdG~~LAS 1697 (1922)
|. |........||...+ ++|+|+-.+|++++ ++|.....+ .+.+..+|.+.| ++.|||..+.|++
T Consensus 188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlS 267 (1202)
T KOG0292|consen 188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILS 267 (1202)
T ss_pred hhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEe
Confidence 00 111122224565544 99999999999999 899988655 567788999999 9999999999999
Q ss_pred Ee-----EEEecCCCeEEEEEcC-CCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccC---------CcceEEEE
Q 000177 1698 NS-----EVWDLRKFRLLRSVPS-LDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHP---------LFAAFRTV 1761 (1922)
Q Consensus 1698 GS-----eIWDLrTgklL~tl~g-H~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp---------~~ssFrt~ 1761 (1922)
+| +|||+...+.++++.- ++. |.++-+|..+.++++. +.+-.++. +..+|+.+. ....++.+
T Consensus 268 nsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFk-leRErpa~~v~~n~LfYvkd~~i~~~ 345 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFK-LERERPAYAVNGNGLFYVKDRFIRSY 345 (1202)
T ss_pred cCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEE-EcccCceEEEcCCEEEEEccceEEee
Confidence 99 5999999999999963 333 9999999999999883 33322221 111121111 12233444
Q ss_pred ecCCCceeeeeccC------CceEEEEEcCCCceEEEE
Q 000177 1762 DAINYSDIATIPVD------RCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1762 Da~dys~IaTidvk------r~I~dLa~SPdds~LAVV 1793 (1922)
|-.+-++......+ .+.+.++++|....+.+.
T Consensus 346 d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 346 DLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred eccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence 44443333333332 357788999977655554
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=6.5e-20 Score=202.69 Aligned_cols=226 Identities=23% Similarity=0.377 Sum_probs=193.8
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
....+....+..|. ..++++.|+|++++|++++.||.|++||+.+++....+..|...|.++ .|++++++++++. |
T Consensus 38 ~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~ 114 (289)
T cd00200 38 LETGELLRTLKGHT-GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV--AFSPDGRILSSSSRD 114 (289)
T ss_pred eeCCCcEEEEecCC-cceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEE--EEcCCCCEEEEecCC
Confidence 34455677788898 899999999999999999999999999999988889999999999999 8899999999977 9
Q ss_pred CcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
+.|.+||+.+ ++++..+.. +.++.|+|++.+++++ +.|+.|++||+++++.+..+. .+......
T Consensus 115 ~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~~~~i~i~d~~~~~~~~~~~-------~~~~~i~~ 182 (289)
T cd00200 115 KTIKVWDVET--GKCLTTLRGHTDWVNSVAFSPDGTFVASS---SQDGTIKLWDLRTGKCVATLT-------GHTGEVNS 182 (289)
T ss_pred CeEEEEECCC--cEEEEEeccCCCcEEEEEEcCcCCEEEEE---cCCCcEEEEEccccccceeEe-------cCccccce
Confidence 9999999986 666666664 4789999999988887 668999999999888877775 12223555
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~ 1718 (1922)
+.|+|+++.+++++ ++||+++++.+..+..|...+ ++.|+|++.++++++ .+||+.+++.+..+..|..
T Consensus 183 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 262 (289)
T cd00200 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN 262 (289)
T ss_pred EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCC
Confidence 99999998777666 999999999999998888777 999999999999887 4999999999999988765
Q ss_pred --eeEEEccCCCEEEEEEc
Q 000177 1719 --TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSgs~ 1735 (1922)
.++.|+|++.+++++..
T Consensus 263 ~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 263 SVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred cEEEEEECCCCCEEEEecC
Confidence 79999999999998853
No 33
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.4e-20 Score=232.67 Aligned_cols=255 Identities=15% Similarity=0.270 Sum_probs=218.6
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCC
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASS 1583 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t 1583 (1922)
..-+ ..|..++|+|.-.+|+++-..|.|++||..-+.++..|..|.++|..| .|+|+..++++| +|.+|+||+..+
T Consensus 6 EskS-sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv--~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 6 ESKS-SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGV--DFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hccc-ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCcccee--eecCCCCeEEecCCccEEEEEeccc
Confidence 3344 779999999999999999999999999999999999999999999999 899999999995 699999999998
Q ss_pred CCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1584 IAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1584 ~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
.+|+.++.|| +.+.||+.--+|+++ ++|.+|+||+..+++++..+. +|+|-+.+..|+|...++
T Consensus 83 --rrclftL~GHlDYVRt~~FHheyPWIlSA---SDDQTIrIWNwqsr~~iavlt-------GHnHYVMcAqFhptEDlI 150 (1202)
T KOG0292|consen 83 --RRCLFTLLGHLDYVRTVFFHHEYPWILSA---SDDQTIRIWNWQSRKCIAVLT-------GHNHYVMCAQFHPTEDLI 150 (1202)
T ss_pred --ceehhhhccccceeEEeeccCCCceEEEc---cCCCeEEEEeccCCceEEEEe-------cCceEEEeeccCCccceE
Confidence 8999999997 789999999999999 999999999999999999986 677888889999999999
Q ss_pred eecc-----EEEEcCC--------C-------------------cc--eeeeccCCCce-EEEEecCCCEEEEEe-----
Q 000177 1660 LWNG-----ILWDRRN--------S-------------------VP--VHRFDQFTDHG-GGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1660 aSgg-----rLWDlrt--------g-------------------k~--I~kf~gh~~~V-sVaFSPdG~~LASGS----- 1699 (1922)
++++ ++||+.- + .. .+.+.||...| -++|||.-..|++|+
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 230 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence 9999 9999862 1 01 13457788778 889999999999999
Q ss_pred EEEecCCCe--EEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-
Q 000177 1700 EVWDLRKFR--LLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV- 1774 (1922)
Q Consensus 1700 eIWDLrTgk--lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv- 1774 (1922)
++|-+...+ .+.+..||.+ .++-|+|..+.|.+.+ -+.+|++||......+.++.-
T Consensus 231 KlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSns-------------------EDksirVwDm~kRt~v~tfrre 291 (1202)
T KOG0292|consen 231 KLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNS-------------------EDKSIRVWDMTKRTSVQTFRRE 291 (1202)
T ss_pred eEEEeccccceeehhhhcccCCcceEEecCccceeEecC-------------------CCccEEEEecccccceeeeecc
Confidence 588886543 3456778877 7999999999999874 234689999888888888743
Q ss_pred CCceEEEEEcCCCceEEEE
Q 000177 1775 DRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1775 kr~I~dLa~SPdds~LAVV 1793 (1922)
..+.|-++.+|..+.+|..
T Consensus 292 ndRFW~laahP~lNLfAAg 310 (1202)
T KOG0292|consen 292 NDRFWILAAHPELNLFAAG 310 (1202)
T ss_pred CCeEEEEEecCCcceeeee
Confidence 4468889999988887754
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=9.4e-20 Score=223.76 Aligned_cols=265 Identities=15% Similarity=0.241 Sum_probs=227.6
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec--CCcEEEecc
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS--SQDVHLWNA 1581 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs--DgtVkLWDl 1581 (1922)
|.... ..|+|++|++.-+.|++|-..|...+|.+....+++.+.-...+|..+ +|+..|.+|+.++ -|.+-||++
T Consensus 261 ln~~~-~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~--~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 261 LNQNS-SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTV--SFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred ecccc-cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEE--EecccCCEEEEcCCccceEEEEEe
Confidence 33444 679999999999999999999999999999999999988778899999 8888999999965 569999999
Q ss_pred CCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCC
Q 000177 1582 SSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPS 1655 (1922)
Q Consensus 1582 ~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPd 1655 (1922)
++ ...+...++| ++++++|||+++++| +.||.|+|||.++|-|..+|. .|...+ ++|+..
T Consensus 338 qs--EsYVlKQQgH~~~i~~l~YSpDgq~iaTG---~eDgKVKvWn~~SgfC~vTFt---------eHts~Vt~v~f~~~ 403 (893)
T KOG0291|consen 338 QS--ESYVLKQQGHSDRITSLAYSPDGQLIATG---AEDGKVKVWNTQSGFCFVTFT---------EHTSGVTAVQFTAR 403 (893)
T ss_pred ec--cceeeeccccccceeeEEECCCCcEEEec---cCCCcEEEEeccCceEEEEec---------cCCCceEEEEEEec
Confidence 98 5556666666 899999999999999 999999999999999999997 455444 999999
Q ss_pred CCeEeecc-----EEEEcCCCcceeeeccCCCce--EEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCCc--ee
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG--GGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLDQ--TT 1720 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V--sVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~~--~s 1720 (1922)
|+.+++.+ +.||+...+..++|......- +++..|.|..++.|+ .||+++||+++..+.||.. .+
T Consensus 404 g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~ 483 (893)
T KOG0291|consen 404 GNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSG 483 (893)
T ss_pred CCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCccee
Confidence 99999887 999999999999998776544 899999999999998 3999999999999999988 78
Q ss_pred EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC-CceeeeeccCCceEEEEEcCCCceEEEEecCCCC
Q 000177 1721 ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN-YSDIATIPVDRCVLDFATERTDSFVGLITMDDQE 1799 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d-ys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~ 1799 (1922)
++|+|.|..|++++ ++.+++.|+..+ ...+.++++...+..+++.|+|..+||...
T Consensus 484 l~f~~~~~~LaS~S-------------------WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTl---- 540 (893)
T KOG0291|consen 484 LSFSPDGSLLASGS-------------------WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATL---- 540 (893)
T ss_pred eEEccccCeEEecc-------------------ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEe----
Confidence 99999999999985 455677777654 345677888889999999999999998853
Q ss_pred CccceEEEEEe
Q 000177 1800 DMFSSARIYEI 1810 (1922)
Q Consensus 1800 d~dSsVRLyEV 1810 (1922)
++.+.+|++
T Consensus 541 --dgqItf~d~ 549 (893)
T KOG0291|consen 541 --DGQITFFDI 549 (893)
T ss_pred --cceEEEEEh
Confidence 345666654
No 35
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=2.2e-20 Score=211.45 Aligned_cols=272 Identities=18% Similarity=0.262 Sum_probs=209.8
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------------C------CceeeeccCCCCeeEEEeeecC
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS------------S------SPLESCTSHQAPVTLVQSHLSG 1563 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t------------g------k~l~tL~gHss~VtsLq~afSp 1563 (1922)
..+..|+ +++.+.+||+||.+++|||.|..|||+|++. | -.++++..|...|+++ .|+|
T Consensus 106 ~ylt~HK-~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l--~FHP 182 (430)
T KOG0640|consen 106 KYLTSHK-SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL--DFHP 182 (430)
T ss_pred EEEeecc-cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce--eecc
Confidence 3467899 9999999999999999999999999999851 1 2367889999999999 8999
Q ss_pred CCcEEEEec-CCcEEEeccCCCCCC-cceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1564 ETQLLLSSS-SQDVHLWNASSIAGG-PMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1564 DG~lLaSSs-DgtVkLWDl~t~~gk-~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
...+|++++ |++|++||+.....+ ....|+ .++++.|||.|.+++.| +...++++||+.|.+|...-.
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg---TdHp~~rlYdv~T~Qcfvsan---- 255 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG---TDHPTLRLYDVNTYQCFVSAN---- 255 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe---cCCCceeEEeccceeEeeecC----
Confidence 999999965 999999999762111 112233 35899999999999998 888999999999998866543
Q ss_pred cccCCCCcc--eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC--ce-EEEEecCCCEEEEEe-----EEEe
Q 000177 1639 NLTGRGHAY--SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD--HG-GGGFHPAGNEVIINS-----EVWD 1703 (1922)
Q Consensus 1639 ~~~~~gh~~--~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~--~V-sVaFSPdG~~LASGS-----eIWD 1703 (1922)
+..+|.. ..+.++++|++.++++ +|||--+++|+.+|....+ .| +..|..||+||++.+ ++|.
T Consensus 256 --Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 256 --PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred --cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence 2234554 4499999999999998 9999999999999965433 23 889999999999998 5999
Q ss_pred cCCCeEEEEEcCCCc-------eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec--c
Q 000177 1704 LRKFRLLRSVPSLDQ-------TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP--V 1774 (1922)
Q Consensus 1704 LrTgklL~tl~gH~~-------~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid--v 1774 (1922)
+.+++++.++.|... +...||.+..|++.--. ...++..||+.+-..+.... .
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE------------------as~slcsWdaRtadr~~l~slgH 395 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE------------------ASNSLCSWDARTADRVALLSLGH 395 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc------------------ccCceeeccccchhhhhhcccCC
Confidence 999999999986522 57789998888875410 22456677776654443333 3
Q ss_pred CCceEEEEEcCCCceEEEEecCCCCCccceEEEEE
Q 000177 1775 DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1775 kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyE 1809 (1922)
...+..+.-+|.+.-+... ..|-..|.|-
T Consensus 396 n~a~R~i~HSP~~p~FmTc------sdD~raRFWy 424 (430)
T KOG0640|consen 396 NGAVRWIVHSPVEPAFMTC------SDDFRARFWY 424 (430)
T ss_pred CCCceEEEeCCCCCceeee------cccceeeeee
Confidence 4457777778887755433 2335677774
No 36
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.86 E-value=1.7e-20 Score=209.91 Aligned_cols=285 Identities=15% Similarity=0.159 Sum_probs=219.1
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccC
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNAS 1582 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~ 1582 (1922)
|+||. .+++.++|+.+|.+|+++++|.++.||-..+|+.+-++.||++.|+|+ ..+.+.+.+++| .|.+++|||+.
T Consensus 6 l~GHE-RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~--Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 6 LQGHE-RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCC--DIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccCc-cccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEE--EecCCcceeeeccccceeEEEEcC
Confidence 67999 999999999999999999999999999999999999999999999999 666788899996 59999999999
Q ss_pred CCCCCcceEecc---ceeEEEcCCCCEEEEeecC--CCCCeEEEEECCCC-------ceeeeeccccccccCCCCcceEE
Q 000177 1583 SIAGGPMHSFEG---CKAARFSNSGNLFAALPTE--TSDRGILLYDIQTY-------QLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1583 t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~--S~DgtIrIWDlrTg-------k~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
+ ++++.+++- ++.+.|+++|++++.+... +.-+.|.+||++.. .+...+. .......++
T Consensus 83 t--Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-------t~~skit~a 153 (327)
T KOG0643|consen 83 T--GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-------TPDSKITSA 153 (327)
T ss_pred C--CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-------CCccceeee
Confidence 9 899888864 5889999999988876322 24467999999843 3333333 233455669
Q ss_pred EEcCCCCeEeecc-----EEEEcCCCc-ceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRRNSV-PVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlrtgk-~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~ 1718 (1922)
-|.|-+++|+++. ..||+++|+ .+..-..|...| .++|+|+..+++++| ++||+++.++++++.....
T Consensus 154 ~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P 233 (327)
T KOG0643|consen 154 LWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP 233 (327)
T ss_pred eecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc
Confidence 9999999999887 899999985 566667788888 999999999999999 5999999999999985544
Q ss_pred -eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecC
Q 000177 1719 -TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMD 1796 (1922)
Q Consensus 1719 -~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~d 1796 (1922)
++.+++|..++++.+...+-.++... ......+.. ++++...-..|..+.. -.+|+.++++|+|+..+
T Consensus 234 vN~aaisP~~d~VilgGGqeA~dVTTT---~~r~GKFEA--rFyh~i~eEEigrvkGHFGPINsvAfhPdGksYs----- 303 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQEAMDVTTT---STRAGKFEA--RFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYS----- 303 (327)
T ss_pred ccceecccccceEEecCCceeeeeeee---cccccchhh--hHHHHHHHHHhccccccccCcceeEECCCCcccc-----
Confidence 89999998888887754443333211 000010111 1122222223333333 35799999999999766
Q ss_pred CCCCccceEEEEEec
Q 000177 1797 DQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1797 ds~d~dSsVRLyEVG 1811 (1922)
++..|+.||++-..
T Consensus 304 -SGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 304 -SGGEDGYVRLHHFD 317 (327)
T ss_pred -cCCCCceEEEEEec
Confidence 56677899998653
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.7e-20 Score=224.59 Aligned_cols=228 Identities=17% Similarity=0.320 Sum_probs=198.6
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS- 1571 (1922)
|.|.+...++.|.-.. -+|.+++|-+.-+++++|+.|..|+||+.++++.+.+|.+|...|.+| +.+|.-.+++|+
T Consensus 40 WnyetqtmVksfeV~~-~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~i--avHPt~P~vLtsS 116 (794)
T KOG0276|consen 40 WNYETQTMVKSFEVSE-VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSI--AVHPTLPYVLTSS 116 (794)
T ss_pred Eecccceeeeeeeecc-cchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeee--eecCCCCeEEecC
Confidence 3455666666666555 789999999999999999999999999999999999999999999999 889999999995
Q ss_pred cCCcEEEeccCCCCCCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
+|-+|++||++. ...+.++|+|| .+++|+| |.+.|+++ +-|++|++|.+.+..+..++. +|...
T Consensus 117 DDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~---sLDrTVKVWslgs~~~nfTl~-------gHekG 185 (794)
T KOG0276|consen 117 DDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKDPNTFASA---SLDRTVKVWSLGSPHPNFTLE-------GHEKG 185 (794)
T ss_pred CccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCCccceeee---eccccEEEEEcCCCCCceeee-------ccccC
Confidence 588999999986 46788999997 5789999 67899999 899999999999988888886 33445
Q ss_pred ceEEEEcCCC--CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1647 YSQIHFSPSD--TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1647 ~~vVaFSPdG--~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
++++.|-+-| .++++++ ++||.++..|+.++.||.+.+ .++|||.=..|++|| +||+-.|.++..++
T Consensus 186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 6668888766 6899988 999999999999999999999 899999999999999 59999999988887
Q ss_pred c-CCCc-eeEEEccCCCEEEEEE
Q 000177 1714 P-SLDQ-TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1714 ~-gH~~-~sVaFSPdG~~LaSgs 1734 (1922)
. +... |+++-.+.+..|+.|+
T Consensus 266 n~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 266 NYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred hcCCceEEEEeecCCCCeEEEec
Confidence 6 3333 9999999988888884
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.9e-20 Score=206.85 Aligned_cols=272 Identities=15% Similarity=0.203 Sum_probs=203.8
Q ss_pred eeeEEecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC---Cceeee-ccCCCCeeEEEeeecCCCcEEEEec-
Q 000177 1499 RPWRTCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNSS---SPLESC-TSHQAPVTLVQSHLSGETQLLLSSS- 1572 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tg---k~l~tL-~gHss~VtsLq~afSpDG~lLaSSs- 1572 (1922)
-.++++.+|. +.|+.++|+|- |..|||||.|+.|+||+...+ .+...+ .+|+..|.++ +|+|.|++|++++
T Consensus 5 ~~~~~~~gh~-~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsv--Awsp~g~~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHK-DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSV--AWSPHGRYLASASF 81 (312)
T ss_pred eeEEeecCCC-CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeee--eecCCCcEEEEeec
Confidence 4567889999 89999999997 899999999999999998743 344444 6899999999 8999999999965
Q ss_pred CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc---eeeeeccccccccCCCC
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQ---LEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk---~i~tL~d~s~~~~~~gh 1645 (1922)
|.++.||.-.....+++.+++|| .+++|+++|++|+++ +.|+.|.||.+..+. ++..++ +|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATC---SRDKSVWiWe~deddEfec~aVL~---------~H 149 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATC---SRDKSVWIWEIDEDDEFECIAVLQ---------EH 149 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEe---eCCCeEEEEEecCCCcEEEEeeec---------cc
Confidence 99999998876567788999987 899999999999999 999999999998544 334443 45
Q ss_pred cce--EEEEcCCCCeEeecc-----EEEEcC---CCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeE
Q 000177 1646 AYS--QIHFSPSDTMLLWNG-----ILWDRR---NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRL 1709 (1922)
Q Consensus 1646 ~~~--vVaFSPdG~lLaSgg-----rLWDlr---tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgkl 1709 (1922)
... .+.|+|...+|++++ ++|+-. ...++.++.+|++.+ +++|+|+|..|++++ +||-+.+.
T Consensus 150 tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-- 227 (312)
T KOG0645|consen 150 TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-- 227 (312)
T ss_pred cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--
Confidence 544 499999999999999 788766 235899999999988 999999999999999 58886522
Q ss_pred EEEEcC-C--CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc--CCceEEEEEc
Q 000177 1710 LRSVPS-L--DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV--DRCVLDFATE 1784 (1922)
Q Consensus 1710 L~tl~g-H--~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv--kr~I~dLa~S 1784 (1922)
+++ | ....+.|. ...|+++..++...++. ...+| +...|..+...+. .-.|+.+.|+
T Consensus 228 ---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~-----~s~~~--------d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 228 ---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFK-----ESDSP--------DEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred ---cchhcccceEeeeec--ccceEeccCCCEEEEEE-----ecCCC--------CCchHHHHHhhhcccccccceEEEc
Confidence 221 2 12678888 45777775443222211 00111 1123333333322 2359999999
Q ss_pred CC-CceEEEEecCCCCCccceEEEEEec
Q 000177 1785 RT-DSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1785 Pd-ds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
|. ...|+. ...|+.|++|++.
T Consensus 290 p~~~~~L~s------~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 290 PKVSNRLAS------GGDDGIVNFWELE 311 (312)
T ss_pred CCCCCceee------cCCCceEEEEEec
Confidence 95 444442 3334889999863
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.2e-20 Score=225.26 Aligned_cols=259 Identities=14% Similarity=0.247 Sum_probs=225.7
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEe
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLW 1579 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLW 1579 (1922)
.++|..|+ ..|.|+.|+|...+++++-..|.|.|||.++...+++|.-..-||... .|-...+++++| +|..|+||
T Consensus 6 krk~~~rS-dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~--kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 6 KRKFQSRS-DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAA--KFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhHhhccC-CceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhh--eeeeccceEEEecCCceEEEE
Confidence 34556688 899999999999999999999999999999999999998888999998 777788888886 59999999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCcceEEEEcC
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
+.++ +..+++|..| ++++.||...+++++ ++|-+|++||.+. ..+.++|. +|.|-+..++|+|
T Consensus 83 nynt--~ekV~~FeAH~DyIR~iavHPt~P~vLts---SDDm~iKlW~we~~wa~~qtfe-------GH~HyVMqv~fnP 150 (794)
T KOG0276|consen 83 NYNT--GEKVKTFEAHSDYIRSIAVHPTLPYVLTS---SDDMTIKLWDWENEWACEQTFE-------GHEHYVMQVAFNP 150 (794)
T ss_pred eccc--ceeeEEeeccccceeeeeecCCCCeEEec---CCccEEEEeeccCceeeeeEEc-------CcceEEEEEEecC
Confidence 9999 8889999987 899999999999998 9999999999985 46677775 4555666699999
Q ss_pred CC-CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCC--CEEEEEe-----EEEecCCCeEEEEEcCCCc--
Q 000177 1655 SD-TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAG--NEVIINS-----EVWDLRKFRLLRSVPSLDQ-- 1718 (1922)
Q Consensus 1655 dG-~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG--~~LASGS-----eIWDLrTgklL~tl~gH~~-- 1718 (1922)
.+ +.+++++ ++|.+.+..+..++++|...| ++.|-+-| .+|++|+ +|||.+|..+++++.||.+
T Consensus 151 kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv 230 (794)
T KOG0276|consen 151 KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV 230 (794)
T ss_pred CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence 66 6788888 999999999999999999999 99998765 6999999 6999999999999999988
Q ss_pred eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEE
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVV 1793 (1922)
+.+.|+|.=..|++++. +.+.++|++.+|+...+... -.++++++..+.+..+++-
T Consensus 231 s~v~fhp~lpiiisgsE-------------------DGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG 287 (794)
T KOG0276|consen 231 SFVFFHPELPIIISGSE-------------------DGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVG 287 (794)
T ss_pred eEEEecCCCcEEEEecC-------------------CccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEe
Confidence 69999999999999952 34678899999988887766 4569999998888877654
No 40
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=4e-21 Score=235.83 Aligned_cols=176 Identities=18% Similarity=0.226 Sum_probs=125.6
Q ss_pred CceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCC
Q 000177 1542 SPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSD 1616 (1922)
Q Consensus 1542 k~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~D 1616 (1922)
+..++|..|+..-+|+ +|+.+.++|+.|. .|.|++|++.+ |.......+| +.+.-+.+|..+++.+. ...
T Consensus 1092 r~w~~frd~~~~fTc~--afs~~~~hL~vG~~~Geik~~nv~s--G~~e~s~ncH~SavT~vePs~dgs~~Ltsss-~S~ 1166 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCI--AFSGGTNHLAVGSHAGEIKIFNVSS--GSMEESVNCHQSAVTLVEPSVDGSTQLTSSS-SSS 1166 (1516)
T ss_pred ccchhhhccccceeeE--EeecCCceEEeeeccceEEEEEccC--ccccccccccccccccccccCCcceeeeecc-ccC
Confidence 4456788889999999 8999988888865 99999999998 7766677666 44666778888877632 222
Q ss_pred CeEEEEECCC-CceeeeeccccccccCCCCcceEEEEcCCCCeEe--ecc---EEEEcCCCcceeeeccCCC-----ceE
Q 000177 1617 RGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL--WNG---ILWDRRNSVPVHRFDQFTD-----HGG 1685 (1922)
Q Consensus 1617 gtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa--Sgg---rLWDlrtgk~I~kf~gh~~-----~Vs 1685 (1922)
--..+|++.. +...++|. ....+.|+..-+.-+ +.+ .+||+.++.++.+|-.... ..+
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~-----------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFD-----------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred chHHHhccccccCcccccc-----------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccc
Confidence 3467899864 44444443 122377776543333 333 8999999988777432211 127
Q ss_pred EEEecCCCEEEEEeEEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEE
Q 000177 1686 GGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1686 VaFSPdG~~LASGSeIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSg 1733 (1922)
+.|+|+...|.-.+-+||++..+.++.|..... -.-.|+|+|.-++.-
T Consensus 1236 a~FsP~D~LIlndGvLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIIN 1284 (1516)
T KOG1832|consen 1236 AHFSPCDTLILNDGVLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIIN 1284 (1516)
T ss_pred cccCCCcceEeeCceeeeeccHHHHhhhhhheecccccccCCCceEEee
Confidence 899999999998889999998877777764444 366799999888764
No 41
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=1.3e-19 Score=227.58 Aligned_cols=207 Identities=15% Similarity=0.250 Sum_probs=166.6
Q ss_pred EecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------CceeeeccCCCCeeEEEeeecCCC-cEEEE-ec
Q 000177 1503 TCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSS-------SPLESCTSHQAPVTLVQSHLSGET-QLLLS-SS 1572 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tg-------k~l~tL~gHss~VtsLq~afSpDG-~lLaS-Ss 1572 (1922)
.|.+|. +.|++++|+| ++++|++|+.|++|+|||+.++ .++.++.+|...|.+| .|+|++ .+|++ +.
T Consensus 70 ~l~GH~-~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l--~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 70 ILLGQE-GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIV--SFHPSAMNVLASAGA 146 (493)
T ss_pred eEeCCC-CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEE--EeCcCCCCEEEEEeC
Confidence 478999 9999999999 8899999999999999999765 3567889999999999 889875 57777 56
Q ss_pred CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc-
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY- 1647 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~- 1647 (1922)
|++|+|||+.+ ++.+..+.+| .+++|+|+|++|+++ +.|++|+|||+++++.+.++. +|..
T Consensus 147 DgtVrIWDl~t--g~~~~~l~~h~~~V~sla~spdG~lLatg---s~Dg~IrIwD~rsg~~v~tl~---------~H~~~ 212 (493)
T PTZ00421 147 DMVVNVWDVER--GKAVEVIKCHSDQITSLEWNLDGSLLCTT---SKDKKLNIIDPRDGTIVSSVE---------AHASA 212 (493)
T ss_pred CCEEEEEECCC--CeEEEEEcCCCCceEEEEEECCCCEEEEe---cCCCEEEEEECCCCcEEEEEe---------cCCCC
Confidence 99999999998 7777777764 789999999999999 899999999999999887775 3432
Q ss_pred --eEEEEcCCCCeEeecc---------EEEEcCCCc-ceeeeccCCC-ce-EEEEecCCCEEEEEe------EEEecCCC
Q 000177 1648 --SQIHFSPSDTMLLWNG---------ILWDRRNSV-PVHRFDQFTD-HG-GGGFHPAGNEVIINS------EVWDLRKF 1707 (1922)
Q Consensus 1648 --~vVaFSPdG~lLaSgg---------rLWDlrtgk-~I~kf~gh~~-~V-sVaFSPdG~~LASGS------eIWDLrTg 1707 (1922)
..+.|.+++.++++.+ ++||+++.. ++..+..+.. .+ ...|++++++|++++ ++||+.++
T Consensus 213 ~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 213 KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 3478999988887543 899999754 5554443332 33 668999999998876 49999999
Q ss_pred eEEEEEcCCC---ceeEEEccC
Q 000177 1708 RLLRSVPSLD---QTTITFNAR 1726 (1922)
Q Consensus 1708 klL~tl~gH~---~~sVaFSPd 1726 (1922)
+++....... ...++|.|.
T Consensus 293 ~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 293 RLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ceEEEeeccCCCCCcceEeccc
Confidence 8877654322 257777774
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=212.56 Aligned_cols=303 Identities=19% Similarity=0.231 Sum_probs=232.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCCcCCCCCCCCCCccc---------CCCC----CCCCCCCCcceeecccccceecc
Q 000177 1416 NSERITLDSLVVQYLKHQHRQC-PAPITTLPPLSLLHPHV---------CPEP----KRSLDAPSNVTARLGTREFKSTY 1481 (1922)
Q Consensus 1416 ~~p~~~LdsIVtqyLr~QH~qC-~~PVtt~PpfSLl~pH~---------CPeP----k~~lsAP~N~aaRl~sr~l~~~~ 1481 (1922)
..||.||-.++-|.|+-|+.|- ..|-++ +.||.... .|.- ...-..++--++++.....+...
T Consensus 154 VVppSRLlaLlGQaLKWQqHQGLLPPGt~---iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvs 230 (508)
T KOG0275|consen 154 VVPPSRLLALLGQALKWQQHQGLLPPGTT---IDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVS 230 (508)
T ss_pred EcChHHHHHHHHHHhhhHhhcCCCCCCce---eeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEee
Confidence 3578999999999999886664 333333 45554221 1110 00112234446788888888888
Q ss_pred cCCccccccceeeecCceeeE------EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCe
Q 000177 1482 SGVHRNRRDRQFVYSRFRPWR------TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPV 1554 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi~srfrpir------tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~V 1554 (1922)
|..+|-..+|+|.....+.-- .|.-|. +.|.|+.||.|...|++|+.||.|+||.+.+|.|++.| .+|+..|
T Consensus 231 gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd-~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGv 309 (508)
T KOG0275|consen 231 GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD-DAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGV 309 (508)
T ss_pred ccccceeeeehhccchhhhhhhhhhhcceeecc-cceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCe
Confidence 888888888888665544322 233466 89999999999999999999999999999999999999 5999999
Q ss_pred eEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1555 TLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1555 tsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
+++ .||.|+..+++ |-|.+++|.-+.+ ++++..|.|| +.+.|.++|.+++++ +.||+|++|+..+..|
T Consensus 310 t~l--~FSrD~SqiLS~sfD~tvRiHGlKS--GK~LKEfrGHsSyvn~a~ft~dG~~iisa---SsDgtvkvW~~KtteC 382 (508)
T KOG0275|consen 310 TCL--SFSRDNSQILSASFDQTVRIHGLKS--GKCLKEFRGHSSYVNEATFTDDGHHIISA---SSDGTVKVWHGKTTEC 382 (508)
T ss_pred eEE--EEccCcchhhcccccceEEEecccc--chhHHHhcCccccccceEEcCCCCeEEEe---cCCccEEEecCcchhh
Confidence 999 89999988888 5599999999998 9999999998 568999999999999 8999999999999999
Q ss_pred eeeeccccccccCCCCcceEEEEcCCC-CeEeecc-----EEEEcCCCcceeeeccCC----CceEEEEecCCCEEEEEe
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSD-TMLLWNG-----ILWDRRNSVPVHRFDQFT----DHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG-~lLaSgg-----rLWDlrtgk~I~kf~gh~----~~VsVaFSPdG~~LASGS 1699 (1922)
+.+|.+. +..+.++.+-.-|.+ ..++.+. ++.++ .|+.+++|.... ..++++.+|.|.++.+.+
T Consensus 383 ~~Tfk~~-----~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig 456 (508)
T KOG0275|consen 383 LSTFKPL-----GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG 456 (508)
T ss_pred hhhccCC-----CCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEc
Confidence 9999732 134556666555544 4444443 44444 478888886432 344899999999999888
Q ss_pred E-----EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1700 E-----VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1700 e-----IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
+ .|.+.+|++-++++-|.. -.++-+|..+.|++.+.
T Consensus 457 ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 457 EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE 499 (508)
T ss_pred cCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc
Confidence 4 577888999999998876 68888998888887643
No 43
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3e-20 Score=232.60 Aligned_cols=234 Identities=15% Similarity=0.208 Sum_probs=185.1
Q ss_pred ecCceeeEEec-CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------C
Q 000177 1495 YSRFRPWRTCR-DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS--------------------------------S 1541 (1922)
Q Consensus 1495 ~srfrpirtLr-gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t--------------------------------g 1541 (1922)
++.....+.+. .|. +.||++.||+||+|||+|+.||.|+||.+.. .
T Consensus 253 lsal~~~Qe~~~ah~-gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 253 LSALTVVQEISNAHK-GAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred ceeeEEeeccccccC-CcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 34445566677 799 9999999999999999999999999998744 0
Q ss_pred ----------------------------CceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEec
Q 000177 1542 ----------------------------SPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFE 1593 (1922)
Q Consensus 1542 ----------------------------k~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~ 1593 (1922)
+++..|.||...|..| +||.++-+|.+|-|.||+||++.. ..|+..|.
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDl--SWSKn~fLLSSSMDKTVRLWh~~~--~~CL~~F~ 407 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDL--SWSKNNFLLSSSMDKTVRLWHPGR--KECLKVFS 407 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheec--ccccCCeeEeccccccEEeecCCC--cceeeEEe
Confidence 1234578999999999 889887666667799999999998 88999986
Q ss_pred c---ceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----E
Q 000177 1594 G---CKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----I 1664 (1922)
Q Consensus 1594 g---h~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----r 1664 (1922)
- ++||+|+| |.++|++| +-|+.|+||++...+.+.-.. ....+..++|.|+|++.+.|+ +
T Consensus 408 HndfVTcVaFnPvDDryFiSG---SLD~KvRiWsI~d~~Vv~W~D--------l~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISG---SLDGKVRLWSISDKKVVDWND--------LRDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred cCCeeEEEEecccCCCcEeec---ccccceEEeecCcCeeEeehh--------hhhhheeEEeccCCceEEEEEeccEEE
Confidence 5 59999999 78999999 899999999999877665443 124455699999999999887 8
Q ss_pred EEEcCCCcceeeeccC--------CCce-EEEEecCCC--EEEEEe----EEEecCCCeEEEEEcCCCc----eeEEEcc
Q 000177 1665 LWDRRNSVPVHRFDQF--------TDHG-GGGFHPAGN--EVIINS----EVWDLRKFRLLRSVPSLDQ----TTITFNA 1725 (1922)
Q Consensus 1665 LWDlrtgk~I~kf~gh--------~~~V-sVaFSPdG~--~LASGS----eIWDLrTgklL~tl~gH~~----~sVaFSP 1725 (1922)
+|+....+.+..++-+ ...| ++.|.|... .|++.. +|+|+++..++..++|+.+ ....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 9998877765554321 1235 888987654 455544 6999999999999997765 6889999
Q ss_pred CCCEEEEEEccCchhhhhhh
Q 000177 1726 RGDVIYAILRRNLEDVMSAV 1745 (1922)
Q Consensus 1726 dG~~LaSgs~~d~~dv~s~l 1745 (1922)
+|++|++++ ++.+.+.|..
T Consensus 557 Dgk~IVs~s-eDs~VYiW~~ 575 (712)
T KOG0283|consen 557 DGKHIVSAS-EDSWVYIWKN 575 (712)
T ss_pred CCCEEEEee-cCceEEEEeC
Confidence 999999996 5556665543
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=199.82 Aligned_cols=250 Identities=14% Similarity=0.197 Sum_probs=204.3
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEe
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLW 1579 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLW 1579 (1922)
.+++..|. ++|..+.|+-||+|.++++.|.+|++||...|.+++++.+|...|..+ +.+.|+..+++ |.|..|.+|
T Consensus 10 ~~~l~~~q-gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~--~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQ-GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDA--ALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeecccc-cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeec--cccccccccccCCCCceEEEE
Confidence 45677899 999999999999999999999999999999999999999999999999 67778888877 569999999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCC--ceeeeeccccccccCCCCcceEEEEc
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTY--QLEAKLSDTSVNLTGRGHAYSQIHFS 1653 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg--k~i~tL~d~s~~~~~~gh~~~vVaFS 1653 (1922)
|+.+ ++.++.|.+| +.+.|+.+...+++| +-|.++++||.++. ++++.+. .....+..+.
T Consensus 87 DV~T--Gkv~Rr~rgH~aqVNtV~fNeesSVv~Sg---sfD~s~r~wDCRS~s~ePiQild---------ea~D~V~Si~ 152 (307)
T KOG0316|consen 87 DVNT--GKVDRRFRGHLAQVNTVRFNEESSVVASG---SFDSSVRLWDCRSRSFEPIQILD---------EAKDGVSSID 152 (307)
T ss_pred Eccc--CeeeeecccccceeeEEEecCcceEEEec---cccceeEEEEcccCCCCccchhh---------hhcCceeEEE
Confidence 9999 9999999987 889999999999999 88999999999864 3455443 3344445555
Q ss_pred CCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc----
Q 000177 1654 PSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ---- 1718 (1922)
Q Consensus 1654 PdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~---- 1718 (1922)
-.+..|++++ +.||+|.|+...-+-+ .+| ++.|+++|+.++.++ ++.|-.||++++.++||.+
T Consensus 153 v~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 153 VAEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred ecccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence 6677788776 9999999987655544 456 999999999999888 6999999999999999988
Q ss_pred eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC--ceEEEEEcCCCc
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR--CVLDFATERTDS 1788 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr--~I~dLa~SPdds 1788 (1922)
...+++.....+++++.+. ...+||-.+-..+..+.+.. .|.++.++|.-.
T Consensus 231 ldc~l~qsdthV~sgSEDG-------------------~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSEDG-------------------KVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD 283 (307)
T ss_pred eeeeecccceeEEeccCCc-------------------eEEEEEeccceeeeeeccCCceeEEeeecccCcc
Confidence 4677888888888885322 23455555555555555533 378999999544
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.2e-20 Score=215.26 Aligned_cols=222 Identities=15% Similarity=0.252 Sum_probs=190.5
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEEec-CC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLSSS-SQ 1574 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSSs-Dg 1574 (1922)
+++..+++.+|. .+|..+.||||.++|++++.|..+++||+.+|.+...+ .+|...+.++ +|.|||.-+++|+ |+
T Consensus 258 ~~kl~~tlvgh~-~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc--~W~pDg~~~V~Gs~dr 334 (519)
T KOG0293|consen 258 HFKLKKTLVGHS-QPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSC--AWCPDGFRFVTGSPDR 334 (519)
T ss_pred ceeeeeeeeccc-CceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCccee--EEccCCceeEecCCCC
Confidence 478889999999 99999999999999999999999999999999998888 5677888999 8899999999965 99
Q ss_pred cEEEeccCCCCCCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1575 DVHLWNASSIAGGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
++..||+. +..+..+++ +++++..+||+++++. +.|..|++|+..+......+. ..+....
T Consensus 335 ~i~~wdlD---gn~~~~W~gvr~~~v~dlait~Dgk~vl~v---~~d~~i~l~~~e~~~dr~lis--------e~~~its 400 (519)
T KOG0293|consen 335 TIIMWDLD---GNILGNWEGVRDPKVHDLAITYDGKYVLLV---TVDKKIRLYNREARVDRGLIS--------EEQPITS 400 (519)
T ss_pred cEEEecCC---cchhhcccccccceeEEEEEcCCCcEEEEE---ecccceeeechhhhhhhcccc--------ccCceeE
Confidence 99999997 556666666 3789999999999998 789999999998866654443 3567777
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce---EEEEe-cCCCEEEEEeE-----EEecCCCeEEEEEcC
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG---GGGFH-PAGNEVIINSE-----VWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V---sVaFS-PdG~~LASGSe-----IWDLrTgklL~tl~g 1715 (1922)
++.|.+++++++.- ++||+...+.+.+|.||.... .-||. .+..+|++||+ ||+..+++++.++.|
T Consensus 401 ~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 401 FSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred EEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 99999999988654 999999999999999998754 44554 45689999994 999999999999999
Q ss_pred CCc--eeEEEccCCCEEEEEEc
Q 000177 1716 LDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
|.. ++|+|||....++++..
T Consensus 481 Hs~~vNcVswNP~~p~m~ASas 502 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASAS 502 (519)
T ss_pred CcceeeEEecCCCCHHHhhccC
Confidence 988 79999998877766533
No 46
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.84 E-value=8.3e-19 Score=203.09 Aligned_cols=268 Identities=18% Similarity=0.253 Sum_probs=205.7
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEE
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHL 1578 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkL 1578 (1922)
.+.+|..|+ +.|.+|+.+|+.++++||+.|-...||++.++.....+.+|...|+++ .||.+|.||+||+ +|.|+|
T Consensus 56 S~~tF~~H~-~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~--~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHT-DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCC--SFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcC-CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEE--EEccCceEEEecCCCccEEE
Confidence 356789999 999999999999999999999999999999999999999999999999 8899999999987 999999
Q ss_pred eccCCCCCCcceEec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEE
Q 000177 1579 WNASSIAGGPMHSFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHF 1652 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaF 1652 (1922)
|...+ +.....+. ...-+.|||-+..|++| +.||.+.+|.+.++...+.+. ||..++ -.|
T Consensus 133 ~~~st--g~~~~~~~~e~~dieWl~WHp~a~illAG---~~DGsvWmw~ip~~~~~kv~~---------Gh~~~ct~G~f 198 (399)
T KOG0296|consen 133 FKVST--GGEQWKLDQEVEDIEWLKWHPRAHILLAG---STDGSVWMWQIPSQALCKVMS---------GHNSPCTCGEF 198 (399)
T ss_pred EEccc--CceEEEeecccCceEEEEecccccEEEee---cCCCcEEEEECCCcceeeEec---------CCCCCcccccc
Confidence 99998 55555553 34678999999999998 999999999999987777775 565554 789
Q ss_pred cCCCCeEeecc-----EEEEcCCCcceeeeccCCCce--EEEEecCCCEEEEEeE-------------------------
Q 000177 1653 SPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG--GGGFHPAGNEVIINSE------------------------- 1700 (1922)
Q Consensus 1653 SPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V--sVaFSPdG~~LASGSe------------------------- 1700 (1922)
.|+|+.++++. ++||..++++++++.+..+.- ++.++.++..++.|++
T Consensus 199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l 278 (399)
T KOG0296|consen 199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL 278 (399)
T ss_pred cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence 99999999765 999999999999886433221 4444444444444441
Q ss_pred ---------------------------------EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhh
Q 000177 1701 ---------------------------------VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAV 1745 (1922)
Q Consensus 1701 ---------------------------------IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~l 1745 (1922)
|||+.+.++-+.+. |.. ..+.|-+ -.+|+++.
T Consensus 279 ~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c----------- 345 (399)
T KOG0296|consen 279 KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTAC----------- 345 (399)
T ss_pred cccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeec-----------
Confidence 44444333322222 222 3444444 33344332
Q ss_pred cccccccCCcceEEEEecCCCceeeeeccC-CceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1746 HTRRVKHPLFAAFRTVDAINYSDIATIPVD-RCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1746 h~rr~ksp~~ssFrt~Da~dys~IaTidvk-r~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.+..++.||+.+.....+.... ..|++++++|+.+++..+. .++..++|++.
T Consensus 346 --------~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s------~D~~a~VF~v~ 398 (399)
T KOG0296|consen 346 --------ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS------DDNTALVFEVP 398 (399)
T ss_pred --------cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEec------CCCeEEEEecC
Confidence 3456889999999988888764 4699999999999887663 34778898874
No 47
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.83 E-value=2.2e-20 Score=221.72 Aligned_cols=239 Identities=15% Similarity=0.262 Sum_probs=197.3
Q ss_pred ecccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEE
Q 000177 1479 STYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQ 1558 (1922)
Q Consensus 1479 ~~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq 1558 (1922)
...+++++..+.|.+ |...+.+++|.+|. .+|..++|+++|..++|+|.|+.|++||+++|+++..|.- ...++|+
T Consensus 230 lLS~gmD~~vklW~v-y~~~~~lrtf~gH~-k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cv- 305 (503)
T KOG0282|consen 230 LLSGGMDGLVKLWNV-YDDRRCLRTFKGHR-KPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCV- 305 (503)
T ss_pred EEecCCCceEEEEEE-ecCcceehhhhcch-hhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceee-
Confidence 456788888888887 77899999999999 9999999999999999999999999999999999988852 3567888
Q ss_pred eeecCCC-cEEEE-ecCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1559 SHLSGET-QLLLS-SSSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1559 ~afSpDG-~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
.|+||+ +++++ ++|+.|+.||+++ ++.++.+.. +..+.|-++|++|++. +.|++++||+.+....++.
T Consensus 306 -kf~pd~~n~fl~G~sd~ki~~wDiRs--~kvvqeYd~hLg~i~~i~F~~~g~rFiss---SDdks~riWe~~~~v~ik~ 379 (503)
T KOG0282|consen 306 -KFHPDNQNIFLVGGSDKKIRQWDIRS--GKVVQEYDRHLGAILDITFVDEGRRFISS---SDDKSVRIWENRIPVPIKN 379 (503)
T ss_pred -ecCCCCCcEEEEecCCCcEEEEeccc--hHHHHHHHhhhhheeeeEEccCCceEeee---ccCccEEEEEcCCCccchh
Confidence 788888 55555 5799999999998 777766654 4889999999999998 8999999999998877665
Q ss_pred eccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC---cceeeeccCCCc---eEEEEecCCCEEEEEe--
Q 000177 1633 LSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS---VPVHRFDQFTDH---GGGGFHPAGNEVIINS-- 1699 (1922)
Q Consensus 1633 L~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg---k~I~kf~gh~~~---VsVaFSPdG~~LASGS-- 1699 (1922)
+.+ ...|..+++..+|++++++.-+ .+|.+... ..-++|.+|.-. +.+.|||||.+|++|.
T Consensus 380 i~~------~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 380 IAD------PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred hcc------hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC
Confidence 541 2358888899999999999776 45554422 234567777643 3799999999999998
Q ss_pred ---EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1700 ---EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1700 ---eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
-+||.+|-+++..+++|+. ..+.|+|...-.+++
T Consensus 454 G~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 454 GKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVAT 492 (503)
T ss_pred ccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEe
Confidence 3999999999999999977 689999976544443
No 48
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.83 E-value=1.6e-18 Score=207.12 Aligned_cols=279 Identities=14% Similarity=0.202 Sum_probs=193.4
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec---cCCCCeeEEEeeecCCCcEEEE-
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT---SHQAPVTLVQSHLSGETQLLLS- 1570 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~---gHss~VtsLq~afSpDG~lLaS- 1570 (1922)
-..|+...+++.|. .-|+|+.|+|||++++|.+.||+|.|||-.+|+.+..+. +|.+.|+.| +|+||++.++|
T Consensus 177 GPPFKFk~s~r~Hs-kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfal--sWsPDs~~~~T~ 253 (603)
T KOG0318|consen 177 GPPFKFKSSFREHS-KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFAL--SWSPDSTQFLTV 253 (603)
T ss_pred CCCeeeeecccccc-cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEE--EECCCCceEEEe
Confidence 34566677889999 899999999999999999999999999999999999986 999999999 89999999988
Q ss_pred ecCCcEEEeccCCCCCCcceEec-------------------------------------------cc----eeEEEcCC
Q 000177 1571 SSSQDVHLWNASSIAGGPMHSFE-------------------------------------------GC----KAARFSNS 1603 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~gk~l~tf~-------------------------------------------gh----~sVaFSPD 1603 (1922)
|.|.+++|||+.+ .+++.+|. || +++..+|+
T Consensus 254 SaDkt~KIWdVs~--~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 254 SADKTIKIWDVST--NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred cCCceEEEEEeec--cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence 5699999999987 44433321 22 67899999
Q ss_pred CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE----------------------------------
Q 000177 1604 GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ---------------------------------- 1649 (1922)
Q Consensus 1604 G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v---------------------------------- 1649 (1922)
+++|++| +.||.|.-||+.+|..-.... .+|...+
T Consensus 332 ~~~i~Sg---syDG~I~~W~~~~g~~~~~~g--------~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~ 400 (603)
T KOG0318|consen 332 GKTIYSG---SYDGHINSWDSGSGTSDRLAG--------KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE 400 (603)
T ss_pred CCEEEee---ccCceEEEEecCCcccccccc--------ccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence 9999999 999999999998876543221 1222222
Q ss_pred ----------EEEcCCCCeEeecc--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEE
Q 000177 1650 ----------IHFSPSDTMLLWNG--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRS 1712 (1922)
Q Consensus 1650 ----------VaFSPdG~lLaSgg--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~t 1712 (1922)
++..+++.+++... .|-=++..+.+.+..-.-..-+++++|++.++++|+ .||.+....+...
T Consensus 401 ~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee 480 (603)
T KOG0318|consen 401 VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE 480 (603)
T ss_pred eeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce
Confidence 33333332222111 111111111111121111122789999999999999 3888876543322
Q ss_pred --EcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCcee-eeec-cCCceEEEEEcCC
Q 000177 1713 --VPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDI-ATIP-VDRCVLDFATERT 1786 (1922)
Q Consensus 1713 --l~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~I-aTid-vkr~I~dLa~SPd 1786 (1922)
...|.. ++|+|||+|.||+++- .... .-.++..++... .... ...+|..++|+|+
T Consensus 481 ~~~~~h~a~iT~vaySpd~~yla~~D-a~rk------------------vv~yd~~s~~~~~~~w~FHtakI~~~aWsP~ 541 (603)
T KOG0318|consen 481 AKLLEHRAAITDVAYSPDGAYLAAGD-ASRK------------------VVLYDVASREVKTNRWAFHTAKINCVAWSPN 541 (603)
T ss_pred eeeecccCCceEEEECCCCcEEEEec-cCCc------------------EEEEEcccCceecceeeeeeeeEEEEEeCCC
Confidence 234544 8999999999999982 1111 222333332221 1111 2456999999999
Q ss_pred CceEEEEecCCCCCccceEEEEEecCCC
Q 000177 1787 DSFVGLITMDDQEDMFSSARIYEIGRRR 1814 (1922)
Q Consensus 1787 ds~LAVVe~dds~d~dSsVRLyEVGr~r 1814 (1922)
...+| ++..|+.|-||+|.+..
T Consensus 542 n~~vA------TGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 542 NKLVA------TGSLDTNVIIYSVKKPA 563 (603)
T ss_pred ceEEE------eccccceEEEEEccChh
Confidence 99988 45678999999996643
No 49
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.83 E-value=6.1e-20 Score=207.93 Aligned_cols=258 Identities=14% Similarity=0.283 Sum_probs=202.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee--------eccCCCCeeEEEeeecCCCcEEEEec-CCcEEEec
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES--------CTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWN 1580 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t--------L~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWD 1580 (1922)
+-+-|..|||||++|++||.||.|.+||..+|+..+. |--|..+|.|+ .||.|..+|++|+ ||.|++|.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci--~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCI--SFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEE--eecccHHHhhccCcCCcEEEEE
Confidence 5678999999999999999999999999999976543 34478899999 8999999999976 99999999
Q ss_pred cCCCCCCcceEec-----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEc
Q 000177 1581 ASSIAGGPMHSFE-----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFS 1653 (1922)
Q Consensus 1581 l~t~~gk~l~tf~-----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFS 1653 (1922)
+.+ +.|++.|. |++|+.|+.|+..++++ +.|.+++|.-+.+|++++.|. ||...+ +.|+
T Consensus 292 i~t--G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~---sfD~tvRiHGlKSGK~LKEfr---------GHsSyvn~a~ft 357 (508)
T KOG0275|consen 292 IET--GQCLRRFDRAHTKGVTCLSFSRDNSQILSA---SFDQTVRIHGLKSGKCLKEFR---------GHSSYVNEATFT 357 (508)
T ss_pred Eec--chHHHHhhhhhccCeeEEEEccCcchhhcc---cccceEEEeccccchhHHHhc---------CccccccceEEc
Confidence 999 99999886 46899999999999998 889999999999999999885 777666 9999
Q ss_pred CCCCeEeecc-----EEEEcCCCcceeeeccCCC--ce-EEEEecCC-CEEEEEeE-----EEecCCCeEEEEEcCCCc-
Q 000177 1654 PSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD--HG-GGGFHPAG-NEVIINSE-----VWDLRKFRLLRSVPSLDQ- 1718 (1922)
Q Consensus 1654 PdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~--~V-sVaFSPdG-~~LASGSe-----IWDLrTgklL~tl~gH~~- 1718 (1922)
++|..+++++ ++|+.++..|+.+|+.... .+ ++..-|.. ..++.+.+ |-++. |+.++++.....
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkRE 436 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKRE 436 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCcc
Confidence 9999999877 9999999999999976543 33 66666643 45666653 55664 889998874433
Q ss_pred ----eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEE
Q 000177 1719 ----TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1719 ----~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVV 1793 (1922)
-+...||.|.++|+...+. .+..|.......-.+..+ ++.+..++-+|..+.+|..
T Consensus 437 gGdFi~~~lSpkGewiYcigED~-------------------vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 437 GGDFINAILSPKGEWIYCIGEDG-------------------VLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred CCceEEEEecCCCcEEEEEccCc-------------------EEEEEEeecCceeeeeecccccccccccCcccchhhhh
Confidence 5788999999999884222 122233333333344444 4457788889998888854
Q ss_pred ecCCCCCccceEEEEE
Q 000177 1794 TMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1794 e~dds~d~dSsVRLyE 1809 (1922)
. .|+..++|.
T Consensus 498 s------EDgllKLWk 507 (508)
T KOG0275|consen 498 S------EDGLLKLWK 507 (508)
T ss_pred c------ccchhhhcC
Confidence 2 345666763
No 50
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=6.1e-19 Score=216.66 Aligned_cols=271 Identities=12% Similarity=0.159 Sum_probs=220.5
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEecc
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNA 1581 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl 1581 (1922)
++.||. ..|.+++||.+...+++|+ .+.|+||+..+.++++++.+- .+.+. .|-|.+++++.|. .|.+.|||+
T Consensus 368 ~~~GHR-~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~--~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 368 EIGGHR-SDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILAS--KFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eeccch-hheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEE--EecCCCceEEEeccCCceEEEEe
Confidence 456899 9999999998887777765 468999999999999999754 66676 8899999999975 899999999
Q ss_pred CCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCC-----Cc--eeeeec-cccccccCCCCcceE
Q 000177 1582 SSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQT-----YQ--LEAKLS-DTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1582 ~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-----gk--~i~tL~-d~s~~~~~~gh~~~v 1649 (1922)
.+ ...+-+...| ++++.+||++.+++| +.|++|++||..- |. .+..+. ...+. ....+-+
T Consensus 442 aS--~~l~Eti~AHdgaIWsi~~~pD~~g~vT~---saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe---l~ddvL~ 513 (888)
T KOG0306|consen 442 AS--ASLVETIRAHDGAIWSISLSPDNKGFVTG---SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE---LEDDVLC 513 (888)
T ss_pred eh--hhhhhhhhccccceeeeeecCCCCceEEe---cCCcEEEEEeEEEEeccCcccceeeeeccceEEe---ccccEEE
Confidence 87 5666666654 889999999999999 9999999999752 11 111111 00000 1344556
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~ 1718 (1922)
+.+||||++|+.+= ++|-+.+-+..-++.||.-+| |+..+||++.+++|| +||-+.-|.+-+++-+|+.
T Consensus 514 v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence 99999999998665 899999988888899999998 999999999999999 6999999999999999987
Q ss_pred --eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC-ceEEEEEcCCCceEEEEec
Q 000177 1719 --TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR-CVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr-~I~dLa~SPdds~LAVVe~ 1795 (1922)
.+|.|-|....++++++ +..++-||+..+..|.+.+... .|+.+++.|+|.++.
T Consensus 594 Svm~V~F~P~~~~FFt~gK-------------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vv---- 650 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGK-------------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVV---- 650 (888)
T ss_pred ceeEEEEcccceeEEEecC-------------------cceEEeechhhhhhheeeccchheeeeeEEcCCCCeEE----
Confidence 79999998888888742 2357788999999999888754 599999999999976
Q ss_pred CCCCCccceEEEEEecC
Q 000177 1796 DDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1796 dds~d~dSsVRLyEVGr 1812 (1922)
+..+|.++|+|+-++
T Consensus 651 --s~shD~sIRlwE~td 665 (888)
T KOG0306|consen 651 --SSSHDKSIRLWERTD 665 (888)
T ss_pred --eccCCceeEeeeccC
Confidence 345678999998543
No 51
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=1.2e-19 Score=223.26 Aligned_cols=219 Identities=16% Similarity=0.244 Sum_probs=185.8
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC----ceeeeccCCCCeeEEEeeecCCC-cEEEE-ecCCc
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS----PLESCTSHQAPVTLVQSHLSGET-QLLLS-SSSQD 1575 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk----~l~tL~gHss~VtsLq~afSpDG-~lLaS-SsDgt 1575 (1922)
+.+.||+ ..|.++....+|-+|+|||+|.+|++|.++.+. ++....||++.|.+| +++..+ .++++ |.|++
T Consensus 359 ~ii~GH~-e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgav--a~~~~~asffvsvS~D~t 435 (775)
T KOG0319|consen 359 QIIPGHT-EAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAV--AGSKLGASFFVSVSQDCT 435 (775)
T ss_pred EEEeCch-hheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccccee--eecccCccEEEEecCCce
Confidence 3678999 999999966678999999999999999874443 445668999999999 555544 46777 56999
Q ss_pred EEEeccCCCC-CCcceEe----------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1576 VHLWNASSIA-GGPMHSF----------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1576 VkLWDl~t~~-gk~l~tf----------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+++|++.... ......| +.+++++++|+.+.|+|| +.|++.+||++.......++. |
T Consensus 436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~---SqDktaKiW~le~~~l~~vLs---------G 503 (775)
T KOG0319|consen 436 LKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG---SQDKTAKIWDLEQLRLLGVLS---------G 503 (775)
T ss_pred EEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec---ccccceeeecccCceEEEEee---------C
Confidence 9999997510 1111122 125999999999999999 999999999999888888886 6
Q ss_pred Ccc--eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1645 HAY--SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1645 h~~--~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
|.. +++.|+|.+++++|++ +||.+.+..|+++|.||...| .+.|-.+|+.|++++ +||++.+..++.
T Consensus 504 H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 504 HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh
Confidence 665 4599999999999888 999999999999999999999 999999999999998 799999999999
Q ss_pred EEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1712 SVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
++..|.. |.++-+|.+.+++++..
T Consensus 584 tlD~H~DrvWaL~~~~~~~~~~tgg~ 609 (775)
T KOG0319|consen 584 TLDAHNDRVWALSVSPLLDMFVTGGG 609 (775)
T ss_pred hhhhccceeEEEeecCccceeEecCC
Confidence 9999987 89999999998888743
No 52
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=4.9e-19 Score=210.89 Aligned_cols=252 Identities=17% Similarity=0.275 Sum_probs=198.8
Q ss_pred CCCcccCCCCCCCCCCCCcceeecccccceecccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe
Q 000177 1449 LLHPHVCPEPKRSLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS 1528 (1922)
Q Consensus 1449 Ll~pH~CPePk~~lsAP~N~aaRl~sr~l~~~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS 1528 (1922)
+.+.++.|. .|++|+.....+-. .|+.. ...+.++|.--. ..|+++.|-.||++|+.|.
T Consensus 29 vssl~fsp~------~P~d~aVt~S~rvq--ly~~~------------~~~~~k~~srFk-~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 29 VSSLCFSPK------HPYDFAVTSSVRVQ--LYSSV------------TRSVRKTFSRFK-DVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred ceeEecCCC------CCCceEEecccEEE--EEecc------------hhhhhhhHHhhc-cceeEEEeecCCeEEEccC
Confidence 334555553 48888887776642 22211 111222222223 6799999999999999999
Q ss_pred CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEE-EEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcC
Q 000177 1529 HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL-LSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSN 1602 (1922)
Q Consensus 1529 ~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lL-aSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSP 1602 (1922)
..|.|+|||..+...++.+.+|+.+|..+ .|+|++..+ ++|+ |+.+++||+.+ ......+.+| +|.+|+|
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~--~f~~~d~t~l~s~sDd~v~k~~d~s~--a~v~~~l~~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVT--KFSPQDNTMLVSGSDDKVVKYWDLST--AYVQAELSGHTDYVRCGDISP 163 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEE--EecccCCeEEEecCCCceEEEEEcCC--cEEEEEecCCcceeEeecccc
Confidence 99999999987777889999999999999 788876554 4454 78899999987 4444467776 7899999
Q ss_pred C-CCEEEEeecCCCCCeEEEEECCCC-ceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCC-ccee
Q 000177 1603 S-GNLFAALPTETSDRGILLYDIQTY-QLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNS-VPVH 1675 (1922)
Q Consensus 1603 D-G~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtg-k~I~ 1675 (1922)
- +..+++| +.||+|++||+++. ..+..+. +++++..+.|-|.|.+|+++| ++||+.+| +.+.
T Consensus 164 ~~~hivvtG---sYDg~vrl~DtR~~~~~v~eln--------hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 164 ANDHIVVTG---SYDGKVRLWDTRSLTSRVVELN--------HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT 232 (487)
T ss_pred CCCeEEEec---CCCceEEEEEeccCCceeEEec--------CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh
Confidence 5 5577887 99999999999987 6666666 788888899999999999888 99999965 5666
Q ss_pred eeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEcc
Q 000177 1676 RFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1676 kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~ 1736 (1922)
.+..|+..| |+.+..++..|++++ ++||+.+.+.++++.-... -+++.+|+++.++.|..+
T Consensus 233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred hhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 666688888 999999999999999 7999999999998874443 799999999999998543
No 53
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=1.5e-18 Score=221.76 Aligned_cols=259 Identities=14% Similarity=0.230 Sum_probs=204.5
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCC------------CCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGS--HTKELKIFDSNS------------SSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS--~DGtIkIWDl~t------------gk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
-+|.+..|.++..+|||..++||+ .||.++||+.+. .+.+.+...|.+.|+|+ .|++||++|++
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CV--R~S~dG~~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCV--RFSPDGSYLAS 86 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEE--EECCCCCeEee
Confidence 457667899999999999999999 999999999742 23455668899999999 89999999999
Q ss_pred ec-CCcEEEeccCC-----CCC-----------CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1571 SS-SQDVHLWNASS-----IAG-----------GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1571 Ss-DgtVkLWDl~t-----~~g-----------k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
|+ |+.|.||.... ..+ +++..+.+| ..++|+|++.+++++ +.|++|.|||.++.++
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~---s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV---SLDNSVIIWNAKTFEL 163 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe---cccceEEEEcccccee
Confidence 65 88899999872 111 234455555 679999999999999 9999999999999988
Q ss_pred eeeeccccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC------ce-EEEEecCCCEE
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD------HG-GGGFHPAGNEV 1695 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~------~V-sVaFSPdG~~L 1695 (1922)
+.++. +|...+ ++|.|-|+|+++-+ ++|++.+....+.+.++.. .+ .+.|||||.+|
T Consensus 164 ~~vl~---------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 164 LKVLR---------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred eeeee---------cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCee
Confidence 88886 777777 99999999999887 9999888777777766543 12 78999999999
Q ss_pred EEEe---------EEEecCCCeEEEEEcCCCc--eeEEEccC--------C-------C--EEEEEEccCchhhhhhhcc
Q 000177 1696 IINS---------EVWDLRKFRLLRSVPSLDQ--TTITFNAR--------G-------D--VIYAILRRNLEDVMSAVHT 1747 (1922)
Q Consensus 1696 ASGS---------eIWDLrTgklL~tl~gH~~--~sVaFSPd--------G-------~--~LaSgs~~d~~dv~s~lh~ 1747 (1922)
++.. .|.+-.+++.-..+-||.. .++.|||. | . .+++|+
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS------------- 301 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS------------- 301 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec-------------
Confidence 9987 3888888888888999988 79999982 1 1 222332
Q ss_pred cccccCCcceEEEEecCCCceeeeecc--CCceEEEEEcCCCceEEEEecC
Q 000177 1748 RRVKHPLFAAFRTVDAINYSDIATIPV--DRCVLDFATERTDSFVGLITMD 1796 (1922)
Q Consensus 1748 rr~ksp~~ssFrt~Da~dys~IaTidv--kr~I~dLa~SPdds~LAVVe~d 1796 (1922)
.+.++.+|....-.++..+.. ...|.|++|+|+|..|-++.+|
T Consensus 302 ------qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~D 346 (942)
T KOG0973|consen 302 ------QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLD 346 (942)
T ss_pred ------CCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecC
Confidence 234566666655566555532 5679999999999988877533
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.6e-17 Score=190.63 Aligned_cols=262 Identities=15% Similarity=0.209 Sum_probs=211.1
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec--C
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS--S 1573 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs--D 1573 (1922)
..|++.+.|+.-. +.|+++.|+++|.+|++++.|-+|+|||..+++.++++..+...|..++|. +++...+.++. |
T Consensus 2 ~s~~~ak~f~~~~-~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Ft-h~~~~~i~sStk~d 79 (311)
T KOG1446|consen 2 RSFRPAKVFRETN-GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFT-HHSNTVIHSSTKED 79 (311)
T ss_pred cccccccccccCC-CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEe-cCCceEEEccCCCC
Confidence 4577778888866 889999999999999999999999999999999999999999999999542 23444555554 8
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
.+|+.-++.+ .+.++-|.|| ++++.+|-++.|+++ +.|++|++||++..+|...+. -...++
T Consensus 80 ~tIryLsl~d--NkylRYF~GH~~~V~sL~~sP~~d~FlS~---S~D~tvrLWDlR~~~cqg~l~---------~~~~pi 145 (311)
T KOG1446|consen 80 DTIRYLSLHD--NKYLRYFPGHKKRVNSLSVSPKDDTFLSS---SLDKTVRLWDLRVKKCQGLLN---------LSGRPI 145 (311)
T ss_pred CceEEEEeec--CceEEEcCCCCceEEEEEecCCCCeEEec---ccCCeEEeeEecCCCCceEEe---------cCCCcc
Confidence 9999999998 8999999997 789999988999999 899999999999988877664 344567
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCC--cceeeeccC----CCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNS--VPVHRFDQF----TDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtg--k~I~kf~gh----~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
++|+|+|-+++.+. +|||+|+- .|-.+|.-. ..+..+.|||||++|+.++ .+.|--+|.++.++
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence 99999999998665 99999963 466666433 3344899999999998888 37788889999999
Q ss_pred cCCCc-----eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC--CceEEEEEcCC
Q 000177 1714 PSLDQ-----TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD--RCVLDFATERT 1786 (1922)
Q Consensus 1714 ~gH~~-----~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk--r~I~dLa~SPd 1786 (1922)
.++.+ -...|+|+|++|+++.. +..+.+|+..+...+..+... ..+..+.|+|.
T Consensus 226 s~~~~~~~~~~~a~ftPds~Fvl~gs~-------------------dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDSKFVLSGSD-------------------DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred eeccCCCCcceeEEECCCCcEEEEecC-------------------CCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 88776 38899999999999953 234566666666666666552 34667778887
Q ss_pred CceEEE
Q 000177 1787 DSFVGL 1792 (1922)
Q Consensus 1787 ds~LAV 1792 (1922)
-..++.
T Consensus 287 ~~mf~s 292 (311)
T KOG1446|consen 287 YAMFVS 292 (311)
T ss_pred eeeeee
Confidence 666553
No 55
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1e-18 Score=198.84 Aligned_cols=265 Identities=16% Similarity=0.186 Sum_probs=192.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcce
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~ 1590 (1922)
-.||.|++.|.+||+|..||.|.|||+.|...-+++.+|..+|+++ +||+||++|+|+ .|+.|++||+.. +.+++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl--~WS~dgr~LltsS~D~si~lwDl~~--gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSL--CWSRDGRKLLTSSRDWSIKLWDLLK--GSPLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEE--EecCCCCEeeeecCCceeEEEeccC--CCcee
Confidence 6899999999999999999999999999999999999999999999 889999999995 599999999998 77877
Q ss_pred Eec---cceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeec-cccccccCCCCcceEEEEcCCCCeEeecc--
Q 000177 1591 SFE---GCKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLS-DTSVNLTGRGHAYSQIHFSPSDTMLLWNG-- 1663 (1922)
Q Consensus 1591 tf~---gh~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~-d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-- 1663 (1922)
.+. .++.+.|+|- .+.++++ -.+..-.+.++..++. ..++ ++.. ..+.......|.+.|+++++|.
T Consensus 102 rirf~spv~~~q~hp~k~n~~va~---~~~~sp~vi~~s~~~h-~~Lp~d~d~---dln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 102 RIRFDSPVWGAQWHPRKRNKCVAT---IMEESPVVIDFSDPKH-SVLPKDDDG---DLNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred EEEccCccceeeeccccCCeEEEE---EecCCcEEEEecCCce-eeccCCCcc---ccccccccccccCCCCEEEEecCc
Confidence 664 3689999994 3444443 2233344555543221 1111 0000 0111122246999999999887
Q ss_pred ---EEEEcCCCcceeeeccCC-Cce-EEEEecCCCEEEEEe-----EEEecCC-------CeE--EEEEcC---CCc-ee
Q 000177 1664 ---ILWDRRNSVPVHRFDQFT-DHG-GGGFHPAGNEVIINS-----EVWDLRK-------FRL--LRSVPS---LDQ-TT 1720 (1922)
Q Consensus 1664 ---rLWDlrtgk~I~kf~gh~-~~V-sVaFSPdG~~LASGS-----eIWDLrT-------gkl--L~tl~g---H~~-~s 1720 (1922)
.++|..+-++++.|.--. +.| .+.|+..|.++++++ +.|+++. +++ .+.+.. ..+ ++
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 799999999999887666 566 899999999999998 4565541 111 111111 111 58
Q ss_pred EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC--ceEEEEEcCCCceEEEEecCCC
Q 000177 1721 ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR--CVLDFATERTDSFVGLITMDDQ 1798 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr--~I~dLa~SPdds~LAVVe~dds 1798 (1922)
+.||.+|.|+++++. ....+.+|+....+.+.-....+ -..|+.|+|....|+.++
T Consensus 255 ccfs~dgeYv~a~s~------------------~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~---- 312 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSA------------------RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA---- 312 (405)
T ss_pred eeecCCccEEEeccc------------------cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc----
Confidence 999999999999842 23456777777777766666533 488999999999888662
Q ss_pred CCccceEEEEEecC
Q 000177 1799 EDMFSSARIYEIGR 1812 (1922)
Q Consensus 1799 ~d~dSsVRLyEVGr 1812 (1922)
-+++++|.+-.
T Consensus 313 ---sg~v~iw~~~~ 323 (405)
T KOG1273|consen 313 ---SGVVYIWAVVQ 323 (405)
T ss_pred ---CCceEEEEeec
Confidence 25789997644
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.81 E-value=3.8e-18 Score=197.68 Aligned_cols=245 Identities=14% Similarity=0.160 Sum_probs=186.5
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEe-
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQS- 1559 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~- 1559 (1922)
.||-+-..+.|. .+.......+.+|+ +.|+|+.||.||.+||||+-+|.|+||...++.....+. ..+..|.|
T Consensus 81 TGGgDD~AflW~--~~~ge~~~eltgHK-DSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---~e~~dieWl 154 (399)
T KOG0296|consen 81 TGGGDDLAFLWD--ISTGEFAGELTGHK-DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---QEVEDIEWL 154 (399)
T ss_pred ecCCCceEEEEE--ccCCcceeEecCCC-CceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee---cccCceEEE
Confidence 344433333333 35556778899999 999999999999999999999999999999999888886 44555555
Q ss_pred eecCCCcEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1560 HLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1560 afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
.|+|.+.+|+.|+ ||.|.+|.+.+ +...+.+.|| ++-.|.|+|++++++ ..|++|++||..+++++.++.
T Consensus 155 ~WHp~a~illAG~~DGsvWmw~ip~--~~~~kv~~Gh~~~ct~G~f~pdGKr~~tg---y~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 155 KWHPRAHILLAGSTDGSVWMWQIPS--QALCKVMSGHNSPCTCGEFIPDGKRILTG---YDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred EecccccEEEeecCCCcEEEEECCC--cceeeEecCCCCCcccccccCCCceEEEE---ecCceEEEEecCCCceeEEec
Confidence 8999999999965 99999999987 5667888886 667899999999999 889999999999999988776
Q ss_pred ------ccccccc--------------------------------------CCCCcceEEEEcC---CCCeEeecc----
Q 000177 1635 ------DTSVNLT--------------------------------------GRGHAYSQIHFSP---SDTMLLWNG---- 1663 (1922)
Q Consensus 1635 ------d~s~~~~--------------------------------------~~gh~~~vVaFSP---dG~lLaSgg---- 1663 (1922)
.+..... .+.+...++.|.| .=.+.++++
T Consensus 230 ~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~ 309 (399)
T KOG0296|consen 230 QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGT 309 (399)
T ss_pred ccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccce
Confidence 1110000 0011111122222 223333333
Q ss_pred -EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1664 -ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1664 -rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
.|||+.+.++-+.+......+.+.|-+ ..+|++++ ++||.|+|+++.++.||.. .+++++|+++.+++++.
T Consensus 310 i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 310 IAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred EEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 799999888777775444444999999 67777777 6999999999999999987 79999999999999965
Q ss_pred cC
Q 000177 1736 RN 1737 (1922)
Q Consensus 1736 ~d 1737 (1922)
++
T Consensus 389 D~ 390 (399)
T KOG0296|consen 389 DN 390 (399)
T ss_pred CC
Confidence 54
No 57
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=1.6e-18 Score=213.42 Aligned_cols=280 Identities=14% Similarity=0.178 Sum_probs=223.7
Q ss_pred cCceeeEEecCCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFL-GDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFS-PDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
...++.+.+-|-. +.|..++|- |+.++|+.+++.+.+|+|++.+..+. .+.||+..|.++ ....+|-+|+|++ |
T Consensus 311 ~~l~i~k~ivG~n-dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL--~~~~~g~llat~sKD 386 (775)
T KOG0319|consen 311 DELTIVKQIVGYN-DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSL--DVWSSGDLLATGSKD 386 (775)
T ss_pred cccEEehhhcCCc-hhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeee--eecccCcEEEEecCC
Confidence 5677777788866 789988876 57789999999999999998877775 789999999999 4445677888865 9
Q ss_pred CcEEEeccCCCC--CCcceEeccc----eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccc----cccC
Q 000177 1574 QDVHLWNASSIA--GGPMHSFEGC----KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV----NLTG 1642 (1922)
Q Consensus 1574 gtVkLWDl~t~~--gk~l~tf~gh----~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~----~~~~ 1642 (1922)
+++++|.++..- ..++....+| .+++++..+ .+|+++ +.|.++++|++...+.... +... ....
T Consensus 387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsv---S~D~tlK~W~l~~s~~~~~--~~~~~~~~t~~a 461 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSV---SQDCTLKLWDLPKSKETAF--PIVLTCRYTERA 461 (775)
T ss_pred ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEe---cCCceEEEecCCCcccccc--cceehhhHHHHh
Confidence 999999884411 1233444555 568887754 678888 9999999999986322111 0111 1122
Q ss_pred CCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
|+..+++++++|++++++|++ +||++...+...++.||...+ +|.|+|+.+.++++| +||.+.++.+++
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk 541 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK 541 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee
Confidence 556677899999999999999 999999999999999999999 999999999999999 799999999999
Q ss_pred EEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC-CceEEEEEcCCCc
Q 000177 1712 SVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD-RCVLDFATERTDS 1788 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk-r~I~dLa~SPdds 1788 (1922)
++.||.. -.+.|-.+|+.|+++. .+.-+++|+..+...+.++|.. .+|+.++.++.+.
T Consensus 542 T~eGH~~aVlra~F~~~~~qliS~~-------------------adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 542 TFEGHTSAVLRASFIRNGKQLISAG-------------------ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred eecCccceeEeeeeeeCCcEEEecc-------------------CCCcEEEEeccchhhhhhhhhccceeEEEeecCccc
Confidence 9999998 5888999999999884 2345678888888888888884 4699999999988
Q ss_pred eEEEEecCCCCCccceEEEEE
Q 000177 1789 FVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1789 ~LAVVe~dds~d~dSsVRLyE 1809 (1922)
++.. ...|+.+-+|.
T Consensus 603 ~~~t------gg~Dg~i~~wk 617 (775)
T KOG0319|consen 603 MFVT------GGGDGRIIFWK 617 (775)
T ss_pred eeEe------cCCCeEEEEee
Confidence 6553 34557788885
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.81 E-value=6.6e-19 Score=195.43 Aligned_cols=273 Identities=17% Similarity=0.243 Sum_probs=221.0
Q ss_pred EEecCCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEE
Q 000177 1502 RTCRDDAGALLTCITFLG---DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVH 1577 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSP---DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVk 1577 (1922)
.++.||+ .+|-.++||| +|-+|+++++||.-.+-+-++|..+.+|.||.+.|++. ..+.+....++ +.|-+-+
T Consensus 8 l~c~ght-rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~--~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHT-RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSA--TLNKNATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCC-cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeee--ecCchhhhhhhhcccchhh
Confidence 4678999 9999999996 89999999999999999999999999999999999998 67766666666 4599999
Q ss_pred EeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEE
Q 000177 1578 LWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHF 1652 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaF 1652 (1922)
|||.-+ +..+++|.. +..++|+.|.++|++| +.++.++|||++..+.... ...+|+..+ +.|
T Consensus 85 vw~a~t--gdelhsf~hkhivk~~af~~ds~~lltg---g~ekllrvfdln~p~App~--------E~~ghtg~Ir~v~w 151 (334)
T KOG0278|consen 85 VWDAVT--GDELHSFEHKHIVKAVAFSQDSNYLLTG---GQEKLLRVFDLNRPKAPPK--------EISGHTGGIRTVLW 151 (334)
T ss_pred hhhhhh--hhhhhhhhhhheeeeEEecccchhhhcc---chHHHhhhhhccCCCCCch--------hhcCCCCcceeEEE
Confidence 999988 888888864 3889999999999999 8889999999986442111 123666655 889
Q ss_pred cCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEcCCCc-eeEE
Q 000177 1653 SPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSLDQ-TTIT 1722 (1922)
Q Consensus 1653 SPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH~~-~sVa 1722 (1922)
...++.|++.. ++||.++++.++++.......++-++++|.+|.++- ++||..++.+++.+....+ .+..
T Consensus 152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SAS 231 (334)
T KOG0278|consen 152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESAS 231 (334)
T ss_pred eccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcccccccc
Confidence 98888888755 999999999999997665555999999999987765 6999999999999886554 7899
Q ss_pred EccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeee-c-cCCceEEEEEcCCCceEEEEecCCCCC
Q 000177 1723 FNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI-P-VDRCVLDFATERTDSFVGLITMDDQED 1800 (1922)
Q Consensus 1723 FSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi-d-vkr~I~dLa~SPdds~LAVVe~dds~d 1800 (1922)
.+|+..+++++. ++++ .+.+|-.+...|..+ . ...+|.++.++|+|...| ++.
T Consensus 232 L~P~k~~fVaGg----ed~~---------------~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA------sGS 286 (334)
T KOG0278|consen 232 LHPKKEFFVAGG----EDFK---------------VYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYA------SGS 286 (334)
T ss_pred ccCCCceEEecC----cceE---------------EEEEeccCCceeeecccCCCCceEEEEECCCCceee------ccC
Confidence 999987777772 2221 344565666666664 2 245799999999999877 455
Q ss_pred ccceEEEEEecCCCC
Q 000177 1801 MFSSARIYEIGRRRP 1815 (1922)
Q Consensus 1801 ~dSsVRLyEVGr~r~ 1815 (1922)
.|+++|||.+...+.
T Consensus 287 EDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 287 EDGTIRLWQTTPGKT 301 (334)
T ss_pred CCceEEEEEecCCCc
Confidence 679999999876554
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.2e-18 Score=192.30 Aligned_cols=227 Identities=19% Similarity=0.251 Sum_probs=196.2
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
.+-|.-.+...++++.+|. ..|..++.+.|...+++|+.|..|.+||+.+|+..+.|.+|...|+.+ .|+.+...++
T Consensus 41 vrLWNp~rg~liktYsghG-~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV--~fNeesSVv~ 117 (307)
T KOG0316|consen 41 VRLWNPLRGALIKTYSGHG-HEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTV--RFNEESSVVA 117 (307)
T ss_pred EEeecccccceeeeecCCC-ceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEE--EecCcceEEE
Confidence 3334455777899999999 999999999999999999999999999999999999999999999999 8899999999
Q ss_pred Eec-CCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1570 SSS-SQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1570 SSs-DgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+++ |.++++||.++...+|++.+.. +.++..+ +..|++| +.||+++.||++.|+...-. .+
T Consensus 118 SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG---S~DGtvRtydiR~G~l~sDy---------~g 183 (307)
T KOG0316|consen 118 SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG---SVDGTVRTYDIRKGTLSSDY---------FG 183 (307)
T ss_pred eccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee---ccCCcEEEEEeecceeehhh---------cC
Confidence 966 9999999999866778888764 4555554 5678888 89999999999998875544 48
Q ss_pred CcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce---EEEEecCCCEEEEEeE-----EEecCCCeEEE
Q 000177 1645 HAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG---GGGFHPAGNEVIINSE-----VWDLRKFRLLR 1711 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V---sVaFSPdG~~LASGSe-----IWDLrTgklL~ 1711 (1922)
|++++++|+++++..+.++ ++.|-.+|+.+..|++|.+.- .++++.....+++||+ +||+-..+.+.
T Consensus 184 ~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 184 HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeee
Confidence 9999999999999998776 999999999999999998744 7889988999999995 99999999998
Q ss_pred EEcCCCc---eeEEEccCCCEEEEE
Q 000177 1712 SVPSLDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1712 tl~gH~~---~sVaFSPdG~~LaSg 1733 (1922)
.++.+.. .++.++|.-..++++
T Consensus 264 k~~~~~~v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 264 KLSVVSTVIVTDLSCHPTMDDFITA 288 (307)
T ss_pred eeccCCceeEEeeecccCccceeEe
Confidence 8886654 799999987666655
No 60
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.81 E-value=1.8e-18 Score=205.88 Aligned_cols=269 Identities=14% Similarity=0.208 Sum_probs=196.7
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC----ceeee-ccCCCCeeEEEeeecCCCcEEEE-ecCCc
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS----PLESC-TSHQAPVTLVQSHLSGETQLLLS-SSSQD 1575 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk----~l~tL-~gHss~VtsLq~afSpDG~lLaS-SsDgt 1575 (1922)
-.|++|+ ..|.++++.|.|..|+|||.|-+|++||+..-. ..+.+ .+....|+++ .|++.|..|++ +....
T Consensus 161 i~l~hgt-k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl--~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 161 IQLKHGT-KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSL--QYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EeccCCc-eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccccccee--eecCCCCeEEEEecCcc
Confidence 3477888 999999999999999999999999999996432 22233 4556789999 77888776655 77888
Q ss_pred EEEeccCCCCCCcceEe-------------ccc----eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCc-eeeeeccc
Q 000177 1576 VHLWNASSIAGGPMHSF-------------EGC----KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQ-LEAKLSDT 1636 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf-------------~gh----~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~ 1636 (1922)
.+|+|-.- ..+..| +|| +|.+|+|.. ..|+++ +.|++++|||+...+ ..+.|. +
T Consensus 238 akl~DRdG---~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~---s~DgtlRiWdv~~~k~q~qVik-~ 310 (641)
T KOG0772|consen 238 AKLLDRDG---FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC---SYDGTLRIWDVNNTKSQLQVIK-T 310 (641)
T ss_pred eeEEccCC---ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe---cCCCcEEEEecCCchhheeEEe-e
Confidence 99998763 222221 234 789999964 578888 899999999998654 333343 1
Q ss_pred cccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC--cceeee-ccCCC--ce-EEEEecCCCEEEEEe-----E
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS--VPVHRF-DQFTD--HG-GGGFHPAGNEVIINS-----E 1700 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg--k~I~kf-~gh~~--~V-sVaFSPdG~~LASGS-----e 1700 (1922)
.... +..-...+++|+|+|++|+++. .+||.++. ++.+.+ +.|.. .| |+.||++|++|++-+ +
T Consensus 311 k~~~-g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 311 KPAG-GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred ccCC-CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 1111 1122333499999999988665 89998643 343333 45655 55 999999999999988 6
Q ss_pred EEecCCC-eEEEEEcCCCc----eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC
Q 000177 1701 VWDLRKF-RLLRSVPSLDQ----TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD 1775 (1922)
Q Consensus 1701 IWDLrTg-klL~tl~gH~~----~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk 1775 (1922)
+||++.+ +++.+..+... +.++|||+.++|++|... .+......+.++|..+|..+..+++.
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~-------------~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSA-------------PNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccc-------------cCCCCCceEEEEeccceeeEEEecCC
Confidence 9999985 56776666554 799999999999998421 11212346889999999999999985
Q ss_pred C-ceEEEEEcCCCceEEEEe
Q 000177 1776 R-CVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1776 r-~I~dLa~SPdds~LAVVe 1794 (1922)
. .|..+.|+|.=+.|.+..
T Consensus 457 ~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred CceEEEEeecchhhheeeec
Confidence 4 599999999777666553
No 61
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=2e-18 Score=220.46 Aligned_cols=230 Identities=19% Similarity=0.282 Sum_probs=185.8
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CCceeeeccCCCCeeEEEee
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS------------------SSPLESCTSHQAPVTLVQSH 1560 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t------------------gk~l~tL~gHss~VtsLq~a 1560 (1922)
+.+.+...|. +.|+|+.|+|||++||+||.|+.|.||.... .++..++.+|...|..+ +
T Consensus 60 k~l~~m~~h~-~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv--~ 136 (942)
T KOG0973|consen 60 KHLCTMDDHD-GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV--N 136 (942)
T ss_pred hhheeecccc-CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcccee--c
Confidence 4456677899 9999999999999999999999999999762 12466789999999999 8
Q ss_pred ecCCCcEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecc
Q 000177 1561 LSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1561 fSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
|+|++.+|++++ |++|.|||..+ .+.+.++.+| ..+.|.|-|++|++- +.|++|+||++.+..+.+++..
T Consensus 137 Wsp~~~~lvS~s~DnsViiwn~~t--F~~~~vl~~H~s~VKGvs~DP~Gky~ASq---sdDrtikvwrt~dw~i~k~It~ 211 (942)
T KOG0973|consen 137 WSPDDSLLVSVSLDNSVIIWNAKT--FELLKVLRGHQSLVKGVSWDPIGKYFASQ---SDDRTLKVWRTSDWGIEKSITK 211 (942)
T ss_pred cCCCccEEEEecccceEEEEcccc--ceeeeeeecccccccceEECCccCeeeee---cCCceEEEEEcccceeeEeecc
Confidence 899999999965 99999999998 6888999987 679999999999998 8999999999988888888763
Q ss_pred ccccccCCCCcceEEEEcCCCCeEeecc---------EEEEcCCCcceeeeccCCCce-EEEEecC------C-------
Q 000177 1636 TSVNLTGRGHAYSQIHFSPSDTMLLWNG---------ILWDRRNSVPVHRFDQFTDHG-GGGFHPA------G------- 1692 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~vVaFSPdG~lLaSgg---------rLWDlrtgk~I~kf~gh~~~V-sVaFSPd------G------- 1692 (1922)
+.-... .......+.|||||++|++.. .|.+-.+.+.-..|-||..++ ++.|+|. .
T Consensus 212 pf~~~~-~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 212 PFEESP-LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred chhhCC-CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCC
Confidence 321110 111122399999999999654 688877778888899999998 9999972 1
Q ss_pred C----EEEEEe-----EEEecCCCeEEEEEc---CCCceeEEEccCCCEEEEEEccC
Q 000177 1693 N----EVIINS-----EVWDLRKFRLLRSVP---SLDQTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1693 ~----~LASGS-----eIWDLrTgklL~tl~---gH~~~sVaFSPdG~~LaSgs~~d 1737 (1922)
+ .+|+|+ .||....-+++..+. .+....++|+|||..|++++.+.
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG 347 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG 347 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence 1 456666 399998777765544 45558999999999999886443
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.80 E-value=1.3e-17 Score=221.49 Aligned_cols=209 Identities=19% Similarity=0.285 Sum_probs=169.4
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC-CCcEEEEe-cCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp-DG~lLaSS-sDgtVkLWDl~t~~g 1586 (1922)
..|.+++|++ ++.+|++|+.||+|+|||+.+++.+..+.+|...|+++ .|+| ++.+|+++ .|++|++||+.+ +
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l--~~~p~~~~~L~Sgs~Dg~v~iWd~~~--~ 608 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSI--DYSSADPTLLASGSDDGSVKLWSINQ--G 608 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEE--EEcCCCCCEEEEEcCCCEEEEEECCC--C
Confidence 5799999987 57899999999999999999999999999999999999 7886 77888885 599999999987 6
Q ss_pred CcceEecc---ceeEEEc-CCCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCCc--ceEEEEcCCCCeE
Q 000177 1587 GPMHSFEG---CKAARFS-NSGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGHA--YSQIHFSPSDTML 1659 (1922)
Q Consensus 1587 k~l~tf~g---h~sVaFS-PDG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh~--~~vVaFSPdG~lL 1659 (1922)
.++.++.. +.++.|+ +++.+|++| +.|++|++||+++++ .+.++. +|. +..+.|. ++.++
T Consensus 609 ~~~~~~~~~~~v~~v~~~~~~g~~latg---s~dg~I~iwD~~~~~~~~~~~~---------~h~~~V~~v~f~-~~~~l 675 (793)
T PLN00181 609 VSIGTIKTKANICCVQFPSESGRSLAFG---SADHKVYYYDLRNPKLPLCTMI---------GHSKTVSYVRFV-DSSTL 675 (793)
T ss_pred cEEEEEecCCCeEEEEEeCCCCCEEEEE---eCCCeEEEEECCCCCccceEec---------CCCCCEEEEEEe-CCCEE
Confidence 67766654 3778885 478999999 889999999998765 344443 454 4448887 67788
Q ss_pred eecc-----EEEEcCC------CcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc--------
Q 000177 1660 LWNG-----ILWDRRN------SVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP-------- 1714 (1922)
Q Consensus 1660 aSgg-----rLWDlrt------gk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~-------- 1714 (1922)
++++ ++||++. .+++++|.+|...+ ++.|+|++.+|++|+ .+|+......+.++.
T Consensus 676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~ 755 (793)
T PLN00181 676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS 755 (793)
T ss_pred EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence 8776 9999985 36788999999887 899999999999999 499987654443221
Q ss_pred -----CCC--ceeEEEccCCCEEEEEEc
Q 000177 1715 -----SLD--QTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1715 -----gH~--~~sVaFSPdG~~LaSgs~ 1735 (1922)
.+. ..+++|+|+|.+|+++..
T Consensus 756 ~~~~~~~~~~V~~v~ws~~~~~lva~~~ 783 (793)
T PLN00181 756 GLEVDDASQFISSVCWRGQSSTLVAANS 783 (793)
T ss_pred ccccCCCCcEEEEEEEcCCCCeEEEecC
Confidence 122 279999999999999853
No 63
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.80 E-value=9.2e-17 Score=184.39 Aligned_cols=255 Identities=14% Similarity=0.200 Sum_probs=188.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEE-EEe-cCCcEEEeccCCCCCCcceEecc---c
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL-LSS-SSQDVHLWNASSIAGGPMHSFEG---C 1595 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lL-aSS-sDgtVkLWDl~t~~gk~l~tf~g---h 1595 (1922)
+..+++++.|+.|++||+.+++.+..+..|.. +.++ .|+|+++.+ +++ .++.|++||..+ ++.+..+.. .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l--~~~~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGI--TLSKDGKLLYVCASDSDTIQVIDLAT--GEVIGTLPSGPDP 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCce--EECCCCCEEEEEECCCCeEEEEECCC--CcEEEeccCCCCc
Confidence 35788999999999999999999888876654 6778 789999876 444 589999999987 665555543 3
Q ss_pred eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcC
Q 000177 1596 KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRR 1669 (1922)
Q Consensus 1596 ~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlr 1669 (1922)
..+.|+|+++.+++++ ..++.|++||+.+++.+..+. .++....++|+|+|++++++. .+||..
T Consensus 76 ~~~~~~~~g~~l~~~~--~~~~~l~~~d~~~~~~~~~~~--------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 76 ELFALHPNGKILYIAN--EDDNLVTVIDIETRKVLAEIP--------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred cEEEECCCCCEEEEEc--CCCCeEEEEECCCCeEEeEee--------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence 6788999999776551 567899999999988777664 223345599999999988655 577998
Q ss_pred CCcceeeeccCCCceEEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCC---------ceeEEEccCCCEEEEEE
Q 000177 1670 NSVPVHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLD---------QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1670 tgk~I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~---------~~sVaFSPdG~~LaSgs 1734 (1922)
+++.+..+.......++.|+|+|++|+.++ .+||+.+++.+..+..+. ...+.|+|+|++++.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 146 TYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred CCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 887766554333444899999999886544 499999998877664221 14689999999987663
Q ss_pred ccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1735 RRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1735 ~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
..+ ..+.+||..+++.+..+.....+..++|+|++.++++.. ..++.+++|++...
T Consensus 226 ~~~------------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~-----~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 226 GPA------------------NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTN-----GVSNDVSVIDVAAL 281 (300)
T ss_pred CCC------------------CeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEc-----CCCCeEEEEECCCC
Confidence 211 235677777766665555566799999999999987653 12357889987543
No 64
>PTZ00420 coronin; Provisional
Probab=99.79 E-value=1.3e-17 Score=211.39 Aligned_cols=214 Identities=14% Similarity=0.204 Sum_probs=162.6
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC--------ceeeeccCCCCeeEEEeeecCCCc
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSS--------PLESCTSHQAPVTLVQSHLSGETQ 1566 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk--------~l~tL~gHss~VtsLq~afSpDG~ 1566 (1922)
.+..++.+|.+|. +.|++++|+|+ +.+|+||+.||+|+|||+.++. ++..+.+|...|.+| .|+|++.
T Consensus 62 ~r~~~v~~L~gH~-~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV--af~P~g~ 138 (568)
T PTZ00420 62 MRKPPVIKLKGHT-SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII--DWNPMNY 138 (568)
T ss_pred CCCceEEEEcCCC-CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEE--EECCCCC
Confidence 3456788899999 99999999996 7899999999999999997642 344678999999999 8899887
Q ss_pred EE-EE-ecCCcEEEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc
Q 000177 1567 LL-LS-SSSQDVHLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1567 lL-aS-SsDgtVkLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
.+ ++ |.|++|+|||+++ ++.+..+. .+.+++|+|+|++|+++ +.|++|+|||+++++.+.++.
T Consensus 139 ~iLaSgS~DgtIrIWDl~t--g~~~~~i~~~~~V~SlswspdG~lLat~---s~D~~IrIwD~Rsg~~i~tl~------- 206 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIEN--EKRAFQINMPKKLSSLKWNIKGNLLSGT---CVGKHMHIIDPRKQEIASSFH------- 206 (568)
T ss_pred eEEEEEeCCCeEEEEECCC--CcEEEEEecCCcEEEEEECCCCCEEEEE---ecCCEEEEEECCCCcEEEEEe-------
Confidence 54 55 5699999999987 55555553 24889999999999988 789999999999999888775
Q ss_pred CCCCcce-------EEEEcCCCCeEeecc---------EEEEcCC-CcceeeeccCC--CceEEEE-ecCCCEEEEEe--
Q 000177 1642 GRGHAYS-------QIHFSPSDTMLLWNG---------ILWDRRN-SVPVHRFDQFT--DHGGGGF-HPAGNEVIINS-- 1699 (1922)
Q Consensus 1642 ~~gh~~~-------vVaFSPdG~lLaSgg---------rLWDlrt-gk~I~kf~gh~--~~VsVaF-SPdG~~LASGS-- 1699 (1922)
+|... ...|++++.+|+++| +|||+++ ++++..+..+. ..+...| .++|.++++|+
T Consensus 207 --gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 207 --IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred --cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 44432 134678999988755 7999995 66777664433 3333344 45588888886
Q ss_pred ---EEEecCCCeEEEEEcCC----CceeEEEccCC
Q 000177 1700 ---EVWDLRKFRLLRSVPSL----DQTTITFNARG 1727 (1922)
Q Consensus 1700 ---eIWDLrTgklL~tl~gH----~~~sVaFSPdG 1727 (1922)
++|++..+. +..+... ....++|.|.-
T Consensus 285 ~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 285 GNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 699998764 2333221 12688888853
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.79 E-value=1.7e-18 Score=194.05 Aligned_cols=227 Identities=19% Similarity=0.218 Sum_probs=186.2
Q ss_pred ec-CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecC
Q 000177 1495 YS-RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573 (1922)
Q Consensus 1495 ~s-rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsD 1573 (1922)
|+ .+..+.++.||+ +.||||..+-+.++|+||+.|.++++||+.+|+++.+++ -..+|..+ .|+.+|++++.+.|
T Consensus 38 ~s~nGerlGty~GHt-GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~--~F~~~gn~~l~~tD 113 (327)
T KOG0643|consen 38 YSLNGERLGTYDGHT-GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRV--DFSFGGNLILASTD 113 (327)
T ss_pred EecCCceeeeecCCC-ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEE--eeccCCcEEEEEeh
Confidence 44 677789999999 999999999999999999999999999999999999986 35789999 88999998888643
Q ss_pred ------CcEEEeccCCCC-----CCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1574 ------QDVHLWNASSIA-----GGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1574 ------gtVkLWDl~t~~-----gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
+.|.++|++... ..|...+.. .+.+-|.|-+++|++| ..||.|.+||+++|+....-.
T Consensus 114 ~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G---he~G~is~~da~~g~~~v~s~---- 186 (327)
T KOG0643|consen 114 KQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG---HEDGSISIYDARTGKELVDSD---- 186 (327)
T ss_pred hhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe---cCCCcEEEEEcccCceeeech----
Confidence 468999998421 344555543 4788999999999999 899999999999986544322
Q ss_pred cccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe--E-----------
Q 000177 1639 NLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--E----------- 1700 (1922)
Q Consensus 1639 ~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--e----------- 1700 (1922)
..+.+.++.+.|+|+..++++++ ++||+++-.++++|.......+.+++|...+++.|+ +
T Consensus 187 --~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~ 264 (327)
T KOG0643|consen 187 --EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRA 264 (327)
T ss_pred --hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccc
Confidence 12456677799999999999998 999999999999997665555999999988888887 2
Q ss_pred ------EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1701 ------VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1701 ------IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
+|++-..+.+..+++|-. ++|+|+|+|+..+++.
T Consensus 265 GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 265 GKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred cchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence 444444455778889976 9999999999888883
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=5.7e-19 Score=203.84 Aligned_cols=265 Identities=16% Similarity=0.247 Sum_probs=206.4
Q ss_pred EEecCCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEec
Q 000177 1502 RTCRDDAGALLTCITFLGDS-SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWN 1580 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWD 1580 (1922)
..|.||. ++|.|++=+|.. ..+++|+.||.|+|||+...++..+|.+|.+.|..| .++. +.++.+|+|.+|+.|.
T Consensus 60 ~~L~gHr-dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi--~v~~-~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 60 GSLDGHR-DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGI--CVTQ-TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhccccc-cccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeE--Eecc-cceEEecCCcceeeee
Confidence 4568999 999999999976 789999999999999999999999999999999999 5554 6677778999999999
Q ss_pred cCCCCCCcceEeccc---eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC
Q 000177 1581 ASSIAGGPMHSFEGC---KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh---~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
+. +.+++++-+. ..+.-+..+..|+|| + ..|.|||.+...++.++.. .-....++.|+|...
T Consensus 136 ~~---~~p~~tilg~s~~~gIdh~~~~~~FaTc---G--e~i~IWD~~R~~Pv~smsw-------G~Dti~svkfNpvET 200 (433)
T KOG0268|consen 136 ID---GPPLHTILGKSVYLGIDHHRKNSVFATC---G--EQIDIWDEQRDNPVSSMSW-------GADSISSVKFNPVET 200 (433)
T ss_pred cc---CCcceeeecccccccccccccccccccc---C--ceeeecccccCCccceeec-------CCCceeEEecCCCcc
Confidence 97 4578887653 556666667888988 3 3499999998888887761 123456699999886
Q ss_pred eEe-ecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE-----EEecCC-CeEEEEEcCCCc--eeEEE
Q 000177 1658 MLL-WNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE-----VWDLRK-FRLLRSVPSLDQ--TTITF 1723 (1922)
Q Consensus 1658 lLa-Sgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe-----IWDLrT-gklL~tl~gH~~--~sVaF 1723 (1922)
.|+ +++ .|||+++++++++.........++|+|.+-.++++++ .+|++. .+++....+|.. .+|.|
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF 280 (433)
T ss_pred hheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEecc
Confidence 655 443 8999999999988865555558999998777788874 667775 356777778876 79999
Q ss_pred ccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC--CceEEEEEcCCCceEEEEecCCCCCc
Q 000177 1724 NARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD--RCVLDFATERTDSFVGLITMDDQEDM 1801 (1922)
Q Consensus 1724 SPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk--r~I~dLa~SPdds~LAVVe~dds~d~ 1801 (1922)
||.|+-+++++ ++.+++++.......--..-.+ ..|+++.|+-+.+||. ++..
T Consensus 281 sptG~Efvsgs-------------------yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~------SGSd 335 (433)
T KOG0268|consen 281 SPTGQEFVSGS-------------------YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYII------SGSD 335 (433)
T ss_pred CCCcchhcccc-------------------ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEE------ecCC
Confidence 99999999985 5566777765544332222223 3699999999999976 3445
Q ss_pred cceEEEEEe
Q 000177 1802 FSSARIYEI 1810 (1922)
Q Consensus 1802 dSsVRLyEV 1810 (1922)
+..||+|..
T Consensus 336 d~nvRlWka 344 (433)
T KOG0268|consen 336 DGNVRLWKA 344 (433)
T ss_pred Ccceeeeec
Confidence 578999964
No 67
>PTZ00421 coronin; Provisional
Probab=99.79 E-value=2.8e-17 Score=206.76 Aligned_cols=213 Identities=15% Similarity=0.186 Sum_probs=162.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc----------e---eeeccCCCCeeEEEeeecC-CCcEEEEe-cCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP----------L---ESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQ 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~----------l---~tL~gHss~VtsLq~afSp-DG~lLaSS-sDg 1574 (1922)
..|+...+++|+..+++++.+..+..|+...+.. . ..+.+|.+.|+++ .|+| ++++|+++ .|+
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v--~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDV--AFNPFDPQKLFTASEDG 98 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEE--EEcCCCCCEEEEEeCCC
Confidence 4456666777777777777777777777543321 1 2468999999999 8898 78888885 599
Q ss_pred cEEEeccCCCC-----CCcceEeccc----eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1575 DVHLWNASSIA-----GGPMHSFEGC----KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1575 tVkLWDl~t~~-----gk~l~tf~gh----~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+|+|||+.... ..++..+.+| .+++|+|++ ++|+++ +.|++|+|||+.+++.+..+. .+.
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg---s~DgtVrIWDl~tg~~~~~l~-------~h~ 168 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA---GADMVVNVWDVERGKAVEVIK-------CHS 168 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE---eCCCEEEEEECCCCeEEEEEc-------CCC
Confidence 99999997521 1356677775 789999985 688998 889999999999998887775 122
Q ss_pred CcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce--EEEEecCCCEEEEEe---------EEEecCCCe
Q 000177 1645 HAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG--GGGFHPAGNEVIINS---------EVWDLRKFR 1708 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V--sVaFSPdG~~LASGS---------eIWDLrTgk 1708 (1922)
..+..++|+|+|.+|++++ ++||+++++.+.++.+|.... .+.|+|++..+++++ ++||+++..
T Consensus 169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 3345599999999999887 899999999999999887654 788999988877653 599998754
Q ss_pred -EEEEEcCCCc---eeEEEccCCCEEEEEE
Q 000177 1709 -LLRSVPSLDQ---TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1709 -lL~tl~gH~~---~sVaFSPdG~~LaSgs 1734 (1922)
++..+..+.. ....|++++.+|+++.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 4444433322 4567999999999875
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.79 E-value=4.7e-19 Score=196.60 Aligned_cols=225 Identities=14% Similarity=0.181 Sum_probs=194.7
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCc
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQD 1575 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-Dgt 1575 (1922)
++.-+.+|.||. +.||.+.++.+...-++++.|-+.+|||.-+|..+.+|. |..-|..+ +|+.|.++|++|. +.-
T Consensus 48 tgdwigtfeghk-gavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~--af~~ds~~lltgg~ekl 123 (334)
T KOG0278|consen 48 TGDWIGTFEGHK-GAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAV--AFSQDSNYLLTGGQEKL 123 (334)
T ss_pred CCCcEEeeeccC-cceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeE--EecccchhhhccchHHH
Confidence 344578999999 999999999999999999999999999999999999886 88899999 8999999999965 889
Q ss_pred EEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
++|||++.+ ..+...+.+| +.+.|....+.|++. +.|++|++||.+++..++++. ..+.+.++.
T Consensus 124 lrvfdln~p-~App~E~~ghtg~Ir~v~wc~eD~~iLSS---add~tVRLWD~rTgt~v~sL~--------~~s~VtSlE 191 (334)
T KOG0278|consen 124 LRVFDLNRP-KAPPKEISGHTGGIRTVLWCHEDKCILSS---ADDKTVRLWDHRTGTEVQSLE--------FNSPVTSLE 191 (334)
T ss_pred hhhhhccCC-CCCchhhcCCCCcceeEEEeccCceEEee---ccCCceEEEEeccCcEEEEEe--------cCCCCccee
Confidence 999999874 3345556554 778999988999997 889999999999999999987 467788899
Q ss_pred EcCCCCeEeecc----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE-----EEecCCCeEEEEE-cCCCc--e
Q 000177 1652 FSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE-----VWDLRKFRLLRSV-PSLDQ--T 1719 (1922)
Q Consensus 1652 FSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe-----IWDLrTgklL~tl-~gH~~--~ 1719 (1922)
++++|++|.+.- ++||..+-.+++.++...+.-+...+|+..+++.|++ .||..|+..+..+ ++|.. .
T Consensus 192 vs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 192 VSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH 271 (334)
T ss_pred eccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceE
Confidence 999999987543 9999999999999987766669999999988888884 6799999988886 78876 7
Q ss_pred eEEEccCCCEEEEEEccC
Q 000177 1720 TITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1720 sVaFSPdG~~LaSgs~~d 1737 (1922)
||.|+|+|...++++.+.
T Consensus 272 cVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDG 289 (334)
T ss_pred EEEECCCCceeeccCCCc
Confidence 999999999999886444
No 69
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.6e-17 Score=203.75 Aligned_cols=251 Identities=18% Similarity=0.217 Sum_probs=192.6
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-CceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS-SPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSI 1584 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg-k~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~ 1584 (1922)
.|+ .+.+.++|.|+|++|+|++.||.|++|+.... ..-.++.-|...|.+++ .. .+.+++++.+++|.+|.+..+
T Consensus 11 aht-~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia--~~-s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 11 AHT-GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIA--CY-SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hcc-CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEe--ec-ccceEEeeccceEEEeeCCCC
Confidence 588 88999999999999999999999999998766 33344444888999993 32 224444567999999999873
Q ss_pred CC-CcceEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEe
Q 000177 1585 AG-GPMHSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLL 1660 (1922)
Q Consensus 1585 ~g-k~l~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLa 1660 (1922)
.. ..+..|.- .++++|+.+|++++.| +.|-.|++-++.+.....++. +|..++ +.|+|.+++|+
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaag---sdD~~vK~~~~~D~s~~~~lr---------gh~apVl~l~~~p~~~fLA 154 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAG---SDDTAVKLLNLDDSSQEKVLR---------GHDAPVLQLSYDPKGNFLA 154 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEee---cCceeEEEEeccccchheeec---------ccCCceeeeeEcCCCCEEE
Confidence 22 24555553 5899999999999999 899999999999888888775 676666 99999999999
Q ss_pred ecc-----EEEEcCCCcceeeeccCC-------Cce--EEEEecCC-CEEEEEe----EEEecCCCeEEEEEcCCCc---
Q 000177 1661 WNG-----ILWDRRNSVPVHRFDQFT-------DHG--GGGFHPAG-NEVIINS----EVWDLRKFRLLRSVPSLDQ--- 1718 (1922)
Q Consensus 1661 Sgg-----rLWDlrtgk~I~kf~gh~-------~~V--sVaFSPdG-~~LASGS----eIWDLrTgklL~tl~gH~~--- 1718 (1922)
+.+ ++||+.++.+.+++.+.. ..+ .++|||+| .+++.+. ++|+..++.....+.....
T Consensus 155 vss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred EEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc
Confidence 655 999999998877775432 122 68999995 4555555 5999999888887764322
Q ss_pred -eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEe
Q 000177 1719 -TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1719 -~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe 1794 (1922)
+.+.|+|+|.||+++. ++..+.+|+..+ ..+....+.|..++|.|+...|.++.
T Consensus 235 ~~~~~wsPnG~YiAAs~-------------------~~g~I~vWnv~t---~~~~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAAST-------------------LDGQILVWNVDT---HERHEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred eEEEEEcCCCcEEeeec-------------------cCCcEEEEeccc---chhccccceeEEEecCCCCCeeEEEe
Confidence 7999999999999984 233455666544 22345567899999999998887775
No 70
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.78 E-value=1.7e-16 Score=182.29 Aligned_cols=255 Identities=12% Similarity=0.126 Sum_probs=190.8
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e-
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S- 1571 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S- 1571 (1922)
....+.++++..|. .+.+++|+|+|+.+ ++++.++.|++||+.+++....+..|.. +..+ .|+|+++.+++ +
T Consensus 18 ~~t~~~~~~~~~~~--~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~--~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 18 TATLEVTRTFPVGQ--RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF--ALHPNGKILYIANE 92 (300)
T ss_pred CCCCceEEEEECCC--CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE--EECCCCCEEEEEcC
Confidence 44566777777665 36789999999976 6778899999999999988877765544 4566 78999987755 3
Q ss_pred cCCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCC-CeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSD-RGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~D-gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
.++.|++||+.+ .+.+..+.. ..+++|+|+|++++++ ..+ ..+.+||..+++....+. .++..
T Consensus 93 ~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~dg~~l~~~---~~~~~~~~~~d~~~~~~~~~~~--------~~~~~ 159 (300)
T TIGR03866 93 DDNLVTVIDIET--RKVLAEIPVGVEPEGMAVSPDGKIVVNT---SETTNMAHFIDTKTYEIVDNVL--------VDQRP 159 (300)
T ss_pred CCCeEEEEECCC--CeEEeEeeCCCCcceEEECCCCCEEEEE---ecCCCeEEEEeCCCCeEEEEEE--------cCCCc
Confidence 489999999987 666666652 3789999999999987 433 467888999887765543 12334
Q ss_pred eEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCC--------CceEEEEecCCCEEEEEe------EEEecCCC
Q 000177 1648 SQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFT--------DHGGGGFHPAGNEVIINS------EVWDLRKF 1707 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~--------~~VsVaFSPdG~~LASGS------eIWDLrTg 1707 (1922)
..+.|+|++++++..+ ++||+.+++.+..+..+. ....+.|+|+|++++++. .+||++++
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 4589999999875322 899999998877664321 123688999999865542 49999999
Q ss_pred eEEEEEc-CCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcC
Q 000177 1708 RLLRSVP-SLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATER 1785 (1922)
Q Consensus 1708 klL~tl~-gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SP 1785 (1922)
+.+..+. ++..++++|+|+|++|+++.. ....+.+||..+...+.++......+.++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~------------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 240 EVLDYLLVGQRVWQLAFTPDEKYLLTTNG------------------VSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred cEEEEEEeCCCcceEEECCCCCEEEEEcC------------------CCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 8887654 444589999999999998732 23457889988888888888777778777764
No 71
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=4.6e-18 Score=209.09 Aligned_cols=228 Identities=18% Similarity=0.299 Sum_probs=198.9
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
.|.....+.++++.. +.+.|+.|-|.++++++|...|.+.|||+.+...+.++.+|.+.|+++ +.+||++.++++
T Consensus 398 iWn~~t~kciRTi~~---~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi--~~~pD~~g~vT~ 472 (888)
T KOG0306|consen 398 IWNRDTLKCIRTITC---GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSI--SLSPDNKGFVTG 472 (888)
T ss_pred EEEccCcceeEEecc---ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeee--eecCCCCceEEe
Confidence 344566888888865 569999999999999999999999999999999999999999999999 889999999885
Q ss_pred -cCCcEEEeccCCCCC---Ccc--------eEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1572 -SSQDVHLWNASSIAG---GPM--------HSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~g---k~l--------~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
.|.+|++||+..... ... ++++ .+.|+.+||||++++.+ --|++|+||-+.+-+...++.
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs---LLdnTVkVyflDtlKFflsLY-- 547 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS---LLDNTVKVYFLDTLKFFLSLY-- 547 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE---eccCeEEEEEecceeeeeeec--
Confidence 599999999864211 111 1111 25899999999999998 889999999999988877775
Q ss_pred cccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEe
Q 000177 1637 SVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWD 1703 (1922)
Q Consensus 1637 s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWD 1703 (1922)
||.-++ +..+||+++++|++ ++|-+.-|.|-+.|-+|.+.| ++.|-|....+.+++ +-||
T Consensus 548 -------GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 548 -------GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred -------ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 776666 88999999999999 999999999999999999998 999999999999999 4899
Q ss_pred cCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1704 LRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1704 LrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
-..++.++++.+|.. ++++.+|+|.++++++++
T Consensus 621 g~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 621 GEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred hhhhhhheeeccchheeeeeEEcCCCCeEEeccCC
Confidence 999999999999987 999999999999999643
No 72
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.78 E-value=7.4e-19 Score=201.08 Aligned_cols=200 Identities=21% Similarity=0.338 Sum_probs=165.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~ 1588 (1922)
..|+|+.+. ...+++|..|.+|+|||.++..+++.+.||++.|.|+++ +.++|++| +|.+|++||+++ +++
T Consensus 198 kgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy----d~rviisGSSDsTvrvWDv~t--ge~ 269 (499)
T KOG0281|consen 198 KGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY----DERVIVSGSSDSTVRVWDVNT--GEP 269 (499)
T ss_pred CceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec----cceEEEecCCCceEEEEeccC--Cch
Confidence 679999985 668999999999999999999999999999999999954 77788885 599999999999 899
Q ss_pred ceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEeec
Q 000177 1589 MHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWN 1662 (1922)
Q Consensus 1589 l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSg 1662 (1922)
+.++-+| ..+.|+ ..+++++ +.|.+|.+||+.....+... ....||...+ +.|+ +++++++
T Consensus 270 l~tlihHceaVLhlrf~--ng~mvtc---SkDrsiaVWdm~sps~it~r------rVLvGHrAaVNvVdfd--~kyIVsA 336 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS--NGYMVTC---SKDRSIAVWDMASPTDITLR------RVLVGHRAAVNVVDFD--DKYIVSA 336 (499)
T ss_pred hhHHhhhcceeEEEEEe--CCEEEEe---cCCceeEEEeccCchHHHHH------HHHhhhhhheeeeccc--cceEEEe
Confidence 8888766 445665 5789999 99999999999875432211 1123565444 6664 5699887
Q ss_pred c-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCE
Q 000177 1663 G-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDV 1729 (1922)
Q Consensus 1663 g-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~ 1729 (1922)
+ ++|++.++..++++.+|...| |+.| +|+++++|| ++||+..|.+++.+.||.. .++.|+. +.
T Consensus 337 SgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--kr 412 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KR 412 (499)
T ss_pred cCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ce
Confidence 7 999999999999999999888 6555 689999999 6999999999999999988 7999964 67
Q ss_pred EEEEE
Q 000177 1730 IYAIL 1734 (1922)
Q Consensus 1730 LaSgs 1734 (1922)
|++|.
T Consensus 413 IVSGa 417 (499)
T KOG0281|consen 413 IVSGA 417 (499)
T ss_pred eeecc
Confidence 77774
No 73
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.78 E-value=2.1e-18 Score=201.91 Aligned_cols=262 Identities=16% Similarity=0.219 Sum_probs=208.3
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEec
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWN 1580 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWD 1580 (1922)
+..|. +.|..+.|-++...|++|+.|..|++|++...+ ...++.|..++|+.+ .|.++++.+++ +.|+.+++|+
T Consensus 171 ld~h~-gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~--d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHE-GEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSI--DFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhccc-cccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCccee--eecCCCceEEeecCCCceeeee
Confidence 45688 999999999998999999999999999998776 567888999999999 88888887777 6799999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
+.. .+..+++.+| +++.|......+++| +.|.+|++||+....|..++. .+...+.+..+ .
T Consensus 248 vd~--~r~~~TLsGHtdkVt~ak~~~~~~~vVsg---s~DRtiK~WDl~k~~C~kt~l--------~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 248 VDS--LRLRHTLSGHTDKVTAAKFKLSHSRVVSG---SADRTIKLWDLQKAYCSKTVL--------PGSQCNDIVCS--I 312 (459)
T ss_pred ccc--hhhhhhhcccccceeeehhhccccceeec---cccchhhhhhhhhhheecccc--------ccccccceEec--c
Confidence 998 8888999997 677887776668888 999999999999988888764 12333334444 4
Q ss_pred CeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC------CCcee
Q 000177 1657 TMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS------LDQTT 1720 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g------H~~~s 1720 (1922)
..++++. ++||++++.++.....+....++..+++|..|.+++ ++.|+++....+++.. ++.+.
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtr 392 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTR 392 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccce
Confidence 4555555 999999999999988877444999999999999999 4999999998888763 34479
Q ss_pred EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc---CCceEEEEEcCCCceEEEEecCC
Q 000177 1721 ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV---DRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv---kr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
+.|||++.|+++|+ .+.++++|+..+.+....... ...|..++|+|.|..+..+.
T Consensus 393 vvfSpd~~YvaAGS-------------------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad--- 450 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGS-------------------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD--- 450 (459)
T ss_pred eEECCCCceeeecc-------------------CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc---
Confidence 99999999999995 334556666555554444333 22599999999999887553
Q ss_pred CCCccceEEEE
Q 000177 1798 QEDMFSSARIY 1808 (1922)
Q Consensus 1798 s~d~dSsVRLy 1808 (1922)
....+++|
T Consensus 451 ---k~~~v~lW 458 (459)
T KOG0288|consen 451 ---KQKAVTLW 458 (459)
T ss_pred ---CCcceEec
Confidence 23456666
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.77 E-value=2.4e-17 Score=208.19 Aligned_cols=268 Identities=16% Similarity=0.230 Sum_probs=215.9
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee-eccCCCCeeEEEeeecCCCcEEEEec-CCcEEE
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES-CTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHL 1578 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t-L~gHss~VtsLq~afSpDG~lLaSSs-DgtVkL 1578 (1922)
.+.+.+|.+..|.|..|. +.++++|+.|++|++||..++..+.+ +.||.+.|+++ .+..-+.+|++|+ |.++++
T Consensus 200 ~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l--~~~~~~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 200 YKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGL--AFPSGGDKLVSGSTDKTERV 275 (537)
T ss_pred ceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeE--EEecCCCEEEEEecCCcEEe
Confidence 455666554789999998 66899999999999999999999988 99999999999 5554567777765 999999
Q ss_pred eccCCCCCCcceEecccee--EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1579 WNASSIAGGPMHSFEGCKA--ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~gh~s--VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
||+.+ +.|.+++.+|.+ .+++-.+.++++| +.|.+|++|++.+++++.++. +|...+-+..-++
T Consensus 276 Wd~~s--g~C~~~l~gh~stv~~~~~~~~~~~sg---s~D~tVkVW~v~n~~~l~l~~---------~h~~~V~~v~~~~ 341 (537)
T KOG0274|consen 276 WDCST--GECTHSLQGHTSSVRCLTIDPFLLVSG---SRDNTVKVWDVTNGACLNLLR---------GHTGPVNCVQLDE 341 (537)
T ss_pred EecCC--CcEEEEecCCCceEEEEEccCceEeec---cCCceEEEEeccCcceEEEec---------cccccEEEEEecC
Confidence 99998 999999999843 3344456677776 899999999999999999885 5777775555568
Q ss_pred CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCC-eEEEEEcCCCceeEEEc
Q 000177 1657 TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKF-RLLRSVPSLDQTTITFN 1724 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTg-klL~tl~gH~~~sVaFS 1724 (1922)
.++++++ ++||+.++++++++.+|+..| ++.+.+. .++++|+ ++||+++. +++.++.+|....-.+.
T Consensus 342 ~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~ 420 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL 420 (537)
T ss_pred CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc
Confidence 8999887 999999999999999999999 8887776 8899998 69999999 99999999988555555
Q ss_pred cCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC--CceEEEEEcCCCceEEEEecCCCCCcc
Q 000177 1725 ARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD--RCVLDFATERTDSFVGLITMDDQEDMF 1802 (1922)
Q Consensus 1725 PdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk--r~I~dLa~SPdds~LAVVe~dds~d~d 1802 (1922)
..+++|.++. .+..+++||..++..+.++... ..|..+++. +..+++.. .+
T Consensus 421 ~~~~~Lvs~~-------------------aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~-------~~ 473 (537)
T KOG0274|consen 421 LRDNFLVSSS-------------------ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSS-------DD 473 (537)
T ss_pred cccceeEecc-------------------ccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEe-------cC
Confidence 5677888773 4457889999999998888874 567777766 23333322 34
Q ss_pred ceEEEEEecCCC
Q 000177 1803 SSARIYEIGRRR 1814 (1922)
Q Consensus 1803 SsVRLyEVGr~r 1814 (1922)
+.+++|++....
T Consensus 474 ~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 474 GSVKLWDLRSGT 485 (537)
T ss_pred CeeEEEecccCc
Confidence 778999775443
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.3e-17 Score=202.91 Aligned_cols=212 Identities=16% Similarity=0.278 Sum_probs=182.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc-CCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCC
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS-HQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSI 1584 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-Hss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~ 1584 (1922)
+. ..|+++.|+++|.+|++|..+|.|.|||..+.+.+.++.+ |...|-++ +|+ +..+.+|+ |+.|..||++.
T Consensus 216 ~~-~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~l--aW~--~~~lssGsr~~~I~~~dvR~- 289 (484)
T KOG0305|consen 216 GE-ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSL--AWN--SSVLSSGSRDGKILNHDVRI- 289 (484)
T ss_pred CC-CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEE--ecc--CceEEEecCCCcEEEEEEec-
Confidence 45 8899999999999999999999999999999999999988 99999999 564 56777754 99999999997
Q ss_pred CCCcce-Eeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCC-C
Q 000177 1585 AGGPMH-SFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPS-D 1656 (1922)
Q Consensus 1585 ~gk~l~-tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPd-G 1656 (1922)
.+... ++.+| ..+.|++|++++++| +.|+.+.|||......+.++. +|...+ ++|+|- .
T Consensus 290 -~~~~~~~~~~H~qeVCgLkws~d~~~lASG---gnDN~~~Iwd~~~~~p~~~~~---------~H~aAVKA~awcP~q~ 356 (484)
T KOG0305|consen 290 -SQHVVSTLQGHRQEVCGLKWSPDGNQLASG---GNDNVVFIWDGLSPEPKFTFT---------EHTAAVKALAWCPWQS 356 (484)
T ss_pred -chhhhhhhhcccceeeeeEECCCCCeeccC---CCccceEeccCCCccccEEEe---------ccceeeeEeeeCCCcc
Confidence 33333 35555 668999999999999 899999999998777777775 576666 999995 4
Q ss_pred CeEeecc-------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-------EEEecCCCeEEEEEcCCCc--ee
Q 000177 1657 TMLLWNG-------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-------EVWDLRKFRLLRSVPSLDQ--TT 1720 (1922)
Q Consensus 1657 ~lLaSgg-------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-------eIWDLrTgklL~tl~gH~~--~s 1720 (1922)
.+|+++| ++||..+|+.+...+...+..++.|++..+.|+++. .||+..+.+.+..+.+|.. ..
T Consensus 357 ~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~ 436 (484)
T KOG0305|consen 357 GLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLY 436 (484)
T ss_pred CceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEE
Confidence 6777777 999999999999998877777999999999998887 4999999999999999988 69
Q ss_pred EEEccCCCEEEEEEccC
Q 000177 1721 ITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d 1737 (1922)
+++||+|..|+++..+.
T Consensus 437 la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 437 LALSPDGETIVTGAADE 453 (484)
T ss_pred EEECCCCCEEEEecccC
Confidence 99999999999985433
No 76
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.77 E-value=9.3e-18 Score=193.32 Aligned_cols=226 Identities=11% Similarity=0.169 Sum_probs=192.6
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
..|....++...++.||. ..|..++||+.-.||++++.|+.|+-||+...+.++.+.||-+.|+++ ..+|.-..|++
T Consensus 176 kIwDlatg~LkltltGhi-~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L--~lhPTldvl~t 252 (460)
T KOG0285|consen 176 KIWDLATGQLKLTLTGHI-ETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL--DLHPTLDVLVT 252 (460)
T ss_pred EEEEcccCeEEEeecchh-heeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE--eccccceeEEe
Confidence 345567788889999999 999999999999999999999999999999999999999999999999 88998888988
Q ss_pred e-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1571 S-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
| .|.+++|||+++ ...++.+.|| ..+.+.|..-.+++| +.|++|++||++.|+...++. .|
T Consensus 253 ~grDst~RvWDiRt--r~~V~~l~GH~~~V~~V~~~~~dpqvit~---S~D~tvrlWDl~agkt~~tlt---------~h 318 (460)
T KOG0285|consen 253 GGRDSTIRVWDIRT--RASVHVLSGHTNPVASVMCQPTDPQVITG---SHDSTVRLWDLRAGKTMITLT---------HH 318 (460)
T ss_pred cCCcceEEEeeecc--cceEEEecCCCCcceeEEeecCCCceEEe---cCCceEEEeeeccCceeEeee---------cc
Confidence 5 599999999998 7789999997 568888877778998 999999999999999988886 34
Q ss_pred cce--EEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1646 AYS--QIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1646 ~~~--vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
... .++.+|....+++++ +-|++..|..++.+.+|+..+ ++....||- +++|+ -+||.+++...+.+
T Consensus 319 kksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred cceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccc
Confidence 444 499999999999998 899999999999999999988 777777765 45555 28999988765554
Q ss_pred c---CC---Cc----eeEEEccCCCEEEEEE
Q 000177 1714 P---SL---DQ----TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1714 ~---gH---~~----~sVaFSPdG~~LaSgs 1734 (1922)
. .. .. ...+|...|..|+++-
T Consensus 398 ~t~vqpGSl~sEagI~as~fDktg~rlit~e 428 (460)
T KOG0285|consen 398 QTIVQPGSLESEAGIFASCFDKTGSRLITGE 428 (460)
T ss_pred cccccCCccccccceeEEeecccCceEEecc
Confidence 2 11 11 5778888999999883
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.77 E-value=3.2e-18 Score=200.45 Aligned_cols=237 Identities=18% Similarity=0.233 Sum_probs=192.0
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEee
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSH 1560 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~a 1560 (1922)
.||.+.....|+....+...+.+|.|-. +.|+.+.|.++++++++.++|+.+++|+++..+...++.||++.|+++ .
T Consensus 192 tgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a--k 268 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLGEKSELISTLAGSL-GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA--K 268 (459)
T ss_pred hcchhhhhhhhhcccchhhhhhhhhccC-CCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee--h
Confidence 3455555555555555566778888887 899999999999999999999999999999999999999999999999 5
Q ss_pred ecCCCcEEEEe-cCCcEEEeccCCCCCCcceEec-c--ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1561 LSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFE-G--CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1561 fSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~-g--h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
|.....-++++ .|.+||+||+.. ..|..++- + ++.|+.+ +..+++| ..|++|++||+++..+...++
T Consensus 269 ~~~~~~~vVsgs~DRtiK~WDl~k--~~C~kt~l~~S~cnDI~~~--~~~~~Sg---H~DkkvRfwD~Rs~~~~~sv~-- 339 (459)
T KOG0288|consen 269 FKLSHSRVVSGSADRTIKLWDLQK--AYCSKTVLPGSQCNDIVCS--ISDVISG---HFDKKVRFWDIRSADKTRSVP-- 339 (459)
T ss_pred hhccccceeeccccchhhhhhhhh--hheeccccccccccceEec--ceeeeec---ccccceEEEeccCCceeeEee--
Confidence 55555547775 599999999997 66665542 2 3445544 5567777 889999999999999988886
Q ss_pred cccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccC-----CCceEEEEecCCCEEEEEe-----EE
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF-----TDHGGGGFHPAGNEVIINS-----EV 1701 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh-----~~~VsVaFSPdG~~LASGS-----eI 1701 (1922)
.+..+..+..+++|..|++++ .+.|+++....+.|... .++..++|||++.|+++|| .|
T Consensus 340 ------~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i 413 (459)
T KOG0288|consen 340 ------LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI 413 (459)
T ss_pred ------cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE
Confidence 344666799999999999888 89999998887777543 2344899999999999999 59
Q ss_pred EecCCCeEEEEEcCCC----ceeEEEccCCCEEEEEEc
Q 000177 1702 WDLRKFRLLRSVPSLD----QTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1702 WDLrTgklL~tl~gH~----~~sVaFSPdG~~LaSgs~ 1735 (1922)
|++.++++.+.+.... .++++|+|.|..++++.+
T Consensus 414 W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 414 WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred EEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 9999999988887432 279999999999999853
No 78
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.76 E-value=1.8e-18 Score=197.87 Aligned_cols=191 Identities=17% Similarity=0.342 Sum_probs=161.9
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecC
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSS 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsD 1573 (1922)
.......++|.||+ +.|.|+.|. .+.|++||.|.+|+|||+++|+++.++.+|...|..+ .|+ +.++++ |.|
T Consensus 224 ~n~~~c~~~L~GHt-GSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhl--rf~--ng~mvtcSkD 296 (499)
T KOG0281|consen 224 KNSLECLKILTGHT-GSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHL--RFS--NGYMVTCSKD 296 (499)
T ss_pred cccHHHHHhhhcCC-CcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEE--EEe--CCEEEEecCC
Confidence 34556678899999 999999996 5699999999999999999999999999999999999 674 346666 459
Q ss_pred CcEEEeccCCCCC-CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1574 QDVHLWNASSIAG-GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1574 gtVkLWDl~t~~g-k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
.++.+||+..+.. .+.+.+.|| +.+.|+ .++|+++ +.|.+|++|++.|+.++.++. +|...
T Consensus 297 rsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsA---SgDRTikvW~~st~efvRtl~---------gHkRG 362 (499)
T KOG0281|consen 297 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSA---SGDRTIKVWSTSTCEFVRTLN---------GHKRG 362 (499)
T ss_pred ceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEe---cCCceEEEEeccceeeehhhh---------ccccc
Confidence 9999999987321 123445565 566664 6799999 899999999999999999986 89988
Q ss_pred EEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCe
Q 000177 1649 QIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFR 1708 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgk 1708 (1922)
+.+.--.|+++++++ ++||+..|.+++.+.||..-+ ++.|. .+.|++|. +|||+.++.
T Consensus 363 IAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 363 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred ceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEeccccc
Confidence 888888999999998 999999999999999999998 89985 47889888 699998753
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.7e-17 Score=196.19 Aligned_cols=252 Identities=19% Similarity=0.274 Sum_probs=201.6
Q ss_pred EecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEec
Q 000177 1503 TCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWN 1580 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWD 1580 (1922)
+.+.| +.|++++|||... -+|+.+ .-.+.||+..+....+++.-....|+++ .|-.||+++++|+ .|.|+|||
T Consensus 22 ~~ke~--~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~--~fR~DG~LlaaGD~sG~V~vfD 96 (487)
T KOG0310|consen 22 VHKEH--NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSV--DFRSDGRLLAAGDESGHVKVFD 96 (487)
T ss_pred ccccc--CcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEE--EeecCCeEEEccCCcCcEEEec
Confidence 34455 4899999999443 233332 3468999998888888887778999999 8889999999986 89999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEc
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFS 1653 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFS 1653 (1922)
+.+ ...++.+.+| +.+.|+|.+ ..|++| ++|+.+++||+.+......+. +|...+ .+|+
T Consensus 97 ~k~--r~iLR~~~ah~apv~~~~f~~~d~t~l~s~---sDd~v~k~~d~s~a~v~~~l~---------~htDYVR~g~~~ 162 (487)
T KOG0310|consen 97 MKS--RVILRQLYAHQAPVHVTKFSPQDNTMLVSG---SDDKVVKYWDLSTAYVQAELS---------GHTDYVRCGDIS 162 (487)
T ss_pred ccc--HHHHHHHhhccCceeEEEecccCCeEEEec---CCCceEEEEEcCCcEEEEEec---------CCcceeEeeccc
Confidence 765 4456777776 678999965 566666 889999999999988644554 677665 8899
Q ss_pred CCCC-eEeecc-----EEEEcCCC-cceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCCC-eEEEEEcCCCc--
Q 000177 1654 PSDT-MLLWNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRKF-RLLRSVPSLDQ-- 1718 (1922)
Q Consensus 1654 PdG~-lLaSgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrTg-klL~tl~gH~~-- 1718 (1922)
|-.. +++||| ++||+++. ..+..| .|..+| ++.|-|.|..|++++ +|||+-+| +++.....|..
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtV 241 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTV 241 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceE
Confidence 8765 677877 99999987 566666 466777 999999999999988 79999965 55555555766
Q ss_pred eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEE
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVV 1793 (1922)
+|+.+..++..|++++ ++...++|+..+|+-+.++....+|.+++++|+++.+++-
T Consensus 242 TcL~l~s~~~rLlS~s-------------------LD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGS-------------------LDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEEEeecCCceEeecc-------------------cccceEEEEccceEEEEeeecccceeeEEecCCCceEEEe
Confidence 8999999999999984 5566889999999999999999999999999999877654
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.76 E-value=5.9e-17 Score=190.55 Aligned_cols=262 Identities=17% Similarity=0.289 Sum_probs=206.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l 1589 (1922)
.++++...|....++||+.|.++.++|..+++.+.+|+||+..|+.+ .|+++...+++ +.|..|+||.... ....
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v--~~~~~~~~v~~aSad~~i~vws~~~--~s~~ 296 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSV--KFHKDLDTVITASADEIIRVWSVPL--SSEP 296 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEE--EeccchhheeecCCcceEEeecccc--ccCc
Confidence 46777777777899999999999999999999999999999999999 89999888888 5699999999976 3333
Q ss_pred eEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--
Q 000177 1590 HSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-- 1663 (1922)
Q Consensus 1590 ~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-- 1663 (1922)
..... ++.+..+|+|.||+++ +.|+++.+.|++++.++....+. ..+-...+++|+|||-++.++.
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsA---s~d~~w~Fsd~~~g~~lt~vs~~-----~s~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSA---SNDGTWAFSDISSGSQLTVVSDE-----TSDVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred cccccccccceeeeeccCCcEEEEe---cCCceEEEEEccCCcEEEEEeec-----cccceeEEeeEcCCceEEeccCCC
Confidence 33333 4889999999999999 89999999999999998877521 0122345599999999999887
Q ss_pred ---EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC---ceeEEEccCCCEEE
Q 000177 1664 ---ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD---QTTITFNARGDVIY 1731 (1922)
Q Consensus 1664 ---rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~---~~sVaFSPdG~~La 1731 (1922)
++||+.++..+.+|.+|...| .+.|+-||.||+++. ++||+|..+..+++.-.+ ..++.|.+.|.+|+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEE
Confidence 999999999999999999999 999999999999998 599999988888887555 38999999999999
Q ss_pred EEEccCchhhhhhhcccccccCCcceEEEEe--cCCCceeeeeccCC-ceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1732 AILRRNLEDVMSAVHTRRVKHPLFAAFRTVD--AINYSDIATIPVDR-CVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1732 Sgs~~d~~dv~s~lh~rr~ksp~~ssFrt~D--a~dys~IaTidvkr-~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
++. .+... ..++ ...|..+..+.... ....+.|.....+++.. .++...++|
T Consensus 449 ~~g-~~l~V------------------y~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~------smd~~l~~~ 503 (506)
T KOG0289|consen 449 IAG-SDLQV------------------YICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLAST------SMDAILRLY 503 (506)
T ss_pred eec-ceeEE------------------EEEecccccceeeehhhhcccccceeeecccceEEeec------cchhheEEe
Confidence 882 11111 1111 12344444444333 45666777778888754 355567776
Q ss_pred E
Q 000177 1809 E 1809 (1922)
Q Consensus 1809 E 1809 (1922)
.
T Consensus 504 a 504 (506)
T KOG0289|consen 504 A 504 (506)
T ss_pred e
Confidence 5
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.76 E-value=3.8e-17 Score=192.13 Aligned_cols=226 Identities=20% Similarity=0.270 Sum_probs=194.0
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS- 1570 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS- 1570 (1922)
.|.+..-+.+.+|+||. -.|+.+.|+|+...+++++.|..|+||.+....+......|..+|+.+ ..+|.|.||++
T Consensus 245 ~~d~~s~q~l~~~~Gh~-kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~l--s~h~tgeYllsA 321 (506)
T KOG0289|consen 245 LFDKPSNQILATLKGHT-KKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGL--SLHPTGEYLLSA 321 (506)
T ss_pred EEecchhhhhhhccCcc-eEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceee--eeccCCcEEEEe
Confidence 34455667788999999 999999999999999999999999999998888888889999999999 88999999998
Q ss_pred ecCCcEEEeccCCCCCCcceEecc------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1571 SSSQDVHLWNASSIAGGPMHSFEG------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~gk~l~tf~g------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+.|++..+.|+++ +.++..... .++.+|||||..|.+| ..|+.|+|||+.++..+..|+ +
T Consensus 322 s~d~~w~Fsd~~~--g~~lt~vs~~~s~v~~ts~~fHpDgLifgtg---t~d~~vkiwdlks~~~~a~Fp---------g 387 (506)
T KOG0289|consen 322 SNDGTWAFSDISS--GSQLTVVSDETSDVEYTSAAFHPDGLIFGTG---TPDGVVKIWDLKSQTNVAKFP---------G 387 (506)
T ss_pred cCCceEEEEEccC--CcEEEEEeeccccceeEEeeEcCCceEEecc---CCCceEEEEEcCCccccccCC---------C
Confidence 5699999999998 666654433 4889999999999998 899999999999988888776 6
Q ss_pred CcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC--ceEEEEecCCCEEEEEe---EEEecC----CCe
Q 000177 1645 HAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD--HGGGGFHPAGNEVIINS---EVWDLR----KFR 1708 (1922)
Q Consensus 1645 h~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~--~VsVaFSPdG~~LASGS---eIWDLr----Tgk 1708 (1922)
|..++ ++|+-+|.|+++.. ++||+|.-+...+|..... ..++.|.+.|.+|++++ .||-.. ++.
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT 467 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence 77666 99999999999776 9999999888888865543 33999999999999988 366655 677
Q ss_pred EEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1709 LLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1709 lL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
.+..+..|.. +.+.|.....++++++
T Consensus 468 ~~~~~~~~sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 468 EIKELADHSGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred eeehhhhcccccceeeecccceEEeecc
Confidence 8888887774 8999999999999874
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.76 E-value=4.4e-17 Score=205.86 Aligned_cols=218 Identities=17% Similarity=0.266 Sum_probs=179.1
Q ss_pred eeecCceeeEE-ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1493 FVYSRFRPWRT-CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1493 fi~srfrpirt-LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
|.......+.+ |.||. +.|++++|..-+.+|++|+.|.+++|||+.+|++..++.+|.+.|.++ .. ...++++|
T Consensus 233 ~~~~~~~~i~~~l~GH~-g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~--~~--~~~~~~sg 307 (537)
T KOG0274|consen 233 WDLNNGYLILTRLVGHF-GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL--TI--DPFLLVSG 307 (537)
T ss_pred eecccceEEEeeccCCC-CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE--Ec--cCceEeec
Confidence 33344556666 99999 999999999878899999999999999999999999999999999999 33 45566664
Q ss_pred -cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
.|.+|++|++.+ +.+++.+.+| +++..+ +.++++| +.|++|++||+.+++++.++. +|.
T Consensus 308 s~D~tVkVW~v~n--~~~l~l~~~h~~~V~~v~~~--~~~lvsg---s~d~~v~VW~~~~~~cl~sl~---------gH~ 371 (537)
T KOG0274|consen 308 SRDNTVKVWDVTN--GACLNLLRGHTGPVNCVQLD--EPLLVSG---SYDGTVKVWDPRTGKCLKSLS---------GHT 371 (537)
T ss_pred cCCceEEEEeccC--cceEEEeccccccEEEEEec--CCEEEEE---ecCceEEEEEhhhceeeeeec---------CCc
Confidence 599999999998 8899999876 666666 8899999 889999999999999999997 788
Q ss_pred ceEEEEcCCC-CeEeecc-----EEEEcCCC-cceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1647 YSQIHFSPSD-TMLLWNG-----ILWDRRNS-VPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1647 ~~vVaFSPdG-~lLaSgg-----rLWDlrtg-k~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
..+.++..++ ..+++++ ++||+++. ++++++.+|...+ -.....+++|++++ ++||..++++++++.
T Consensus 372 ~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 372 GRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred ceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccc-cccccccceeEeccccccEEEeecccCceeeeec
Confidence 8875555556 8888888 99999999 9999999998877 33345578899888 699999999999999
Q ss_pred CCC-c--eeEEEccCCCEEEEEE
Q 000177 1715 SLD-Q--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1715 gH~-~--~sVaFSPdG~~LaSgs 1734 (1922)
++. . ..+.+. ...+++++
T Consensus 451 ~~~~~~v~~l~~~--~~~il~s~ 471 (537)
T KOG0274|consen 451 GRHVGGVSALALG--KEEILCSS 471 (537)
T ss_pred cCCcccEEEeecC--cceEEEEe
Confidence 843 3 344443 34555553
No 83
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.76 E-value=7.1e-17 Score=187.83 Aligned_cols=224 Identities=17% Similarity=0.325 Sum_probs=183.1
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCCce----eeeccCCCCeeEEEeeecCCCcE
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSS---HIAVGSHTKELKIFDSNSSSPL----ESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~---lLASGS~DGtIkIWDl~tgk~l----~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
-..++.+.++.||. ++|..++|.-... .++++|.|.++++|.++.+... ....||...|-+| +..++|..
T Consensus 131 d~~Gk~~~~~~Ght-~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV--sv~~sgtr 207 (423)
T KOG0313|consen 131 DLKGKSIKTIVGHT-GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV--SVDSSGTR 207 (423)
T ss_pred ecCCceEEEEecCC-cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE--EecCCCCe
Confidence 44778889999999 9999888865333 5999999999999999877543 3346999999999 88899999
Q ss_pred EEEec-CCcEEEeccCC-----------------------CCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeE
Q 000177 1568 LLSSS-SQDVHLWNASS-----------------------IAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGI 1619 (1922)
Q Consensus 1568 LaSSs-DgtVkLWDl~t-----------------------~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtI 1619 (1922)
+++++ |.+|+||+... ....++.++.|| .++.|++ ...++++ +.|++|
T Consensus 208 ~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~---SwDHTI 283 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSV---SWDHTI 283 (423)
T ss_pred EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEee---cccceE
Confidence 98865 99999999322 012345566676 5688988 6678888 899999
Q ss_pred EEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCc---ceeeeccCCCce-EEEEec
Q 000177 1620 LLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSV---PVHRFDQFTDHG-GGGFHP 1690 (1922)
Q Consensus 1620 rIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk---~I~kf~gh~~~V-sVaFSP 1690 (1922)
+.||+.+++++.++. .+...+++.++|..++|++++ ++||.|++. +.++|.+|.++| ++.|+|
T Consensus 284 k~WDletg~~~~~~~--------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp 355 (423)
T KOG0313|consen 284 KVWDLETGGLKSTLT--------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP 355 (423)
T ss_pred EEEEeecccceeeee--------cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence 999999999998886 456777899999999999988 999999864 568899999999 999999
Q ss_pred CCCE-EEEEe-----EEEecCCCe-EEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1691 AGNE-VIINS-----EVWDLRKFR-LLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1691 dG~~-LASGS-----eIWDLrTgk-lL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
...+ |++++ ++||+|+.+ ++..+.+|.. -++.|+. |..|++|.
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGG 407 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGG 407 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEecc
Confidence 7764 56666 699999987 9999999977 6888886 45777774
No 84
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.75 E-value=3.5e-16 Score=187.35 Aligned_cols=309 Identities=14% Similarity=0.170 Sum_probs=226.9
Q ss_pred CCccccccceeeecCceeeEEecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeee
Q 000177 1483 GVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHL 1561 (1922)
Q Consensus 1483 g~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~af 1561 (1922)
|.+..++.+.|.+..+..+..+.||. ..|++|.|-|. .-+++|||.|++|.+|+-...+...++..|...|+++ .|
T Consensus 122 GEGrerfg~~F~~DSG~SvGei~GhS-r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~V--Ry 198 (603)
T KOG0318|consen 122 GEGRERFGHVFLWDSGNSVGEITGHS-RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCV--RY 198 (603)
T ss_pred ecCccceeEEEEecCCCccceeeccc-eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeE--EE
Confidence 34444677888899999999999999 99999999994 4489999999999999988888888999999999999 89
Q ss_pred cCCCcEEEE-ecCCcEEEeccCCCCCCcceEec---cc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1562 SGETQLLLS-SSSQDVHLWNASSIAGGPMHSFE---GC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1562 SpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~---gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
+|||.++++ |+|++|.+||-.+ ++.+..|. +| ..+.|+||++.|+++ +.|++++|||+.+.+++.++
T Consensus 199 sPDG~~Fat~gsDgki~iyDGkt--ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~---SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 199 SPDGSRFATAGSDGKIYIYDGKT--GEKVGELEDSDAHKGSIFALSWSPDSTQFLTV---SADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred CCCCCeEEEecCCccEEEEcCCC--ccEEEEecCCCCccccEEEEEECCCCceEEEe---cCCceEEEEEeeccceEEEe
Confidence 999999999 7899999999998 77788887 33 789999999999999 99999999999999999998
Q ss_pred ccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEE
Q 000177 1634 SDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVW 1702 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIW 1702 (1922)
.-... ...+.--+-|. ...|++.+ .+++...+.+++.+.+|+..| ++..+|++++|++|+ .-|
T Consensus 274 ~~~~~----v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 274 PMGST----VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred ecCCc----hhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 61111 01111114555 33444333 789999899999999999999 999999999999999 379
Q ss_pred ecCCCeEEEEE-cCCCc--eeEEEccCCCEEEEEEccCchhhhh---hh-cccccccCCcc-eEEEEec-----------
Q 000177 1703 DLRKFRLLRSV-PSLDQ--TTITFNARGDVIYAILRRNLEDVMS---AV-HTRRVKHPLFA-AFRTVDA----------- 1763 (1922)
Q Consensus 1703 DLrTgklL~tl-~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s---~l-h~rr~ksp~~s-sFrt~Da----------- 1763 (1922)
+..++..-+-. .+|.. .+++-+..+.++..++.+....+-- .. ....++-...+ .+.+...
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence 99888765444 45655 6777777777777775332111100 00 00001111111 1111111
Q ss_pred ----CCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1764 ----INYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1764 ----~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.+...+.+++.......++++|++..+||-. .|..+++|.+.
T Consensus 428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG------~Dgkvhvysl~ 473 (603)
T KOG0318|consen 428 IVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG------QDGKVHVYSLS 473 (603)
T ss_pred EEEEecCCcceeeccccccceEEEcCCCCEEEEec------ccceEEEEEec
Confidence 1223334444556678889999999988753 34679999874
No 85
>PTZ00420 coronin; Provisional
Probab=99.75 E-value=2.9e-16 Score=199.23 Aligned_cols=199 Identities=12% Similarity=0.184 Sum_probs=152.3
Q ss_pred EEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEEe-cCCcEEEeccCCCCC------CcceEeccc--
Q 000177 1526 VGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLSS-SSQDVHLWNASSIAG------GPMHSFEGC-- 1595 (1922)
Q Consensus 1526 SGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaSS-sDgtVkLWDl~t~~g------k~l~tf~gh-- 1595 (1922)
.|+.++.|++|+......+..+.+|..+|+++ .|+|+ +.+|+++ .|++|+|||+.+... .++..+.+|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~l--afsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDL--QFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEE--EEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 37788999999998888888999999999999 78986 6788885 599999999975211 133455554
Q ss_pred --eeEEEcCCCCEE-EEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEE
Q 000177 1596 --KAARFSNSGNLF-AALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWD 1667 (1922)
Q Consensus 1596 --~sVaFSPDG~~L-aSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWD 1667 (1922)
.+++|+|++..+ +++ +.|++|+|||+++++.+..+. +...+..++|+|+|.+|++++ +|||
T Consensus 127 ~V~sVaf~P~g~~iLaSg---S~DgtIrIWDl~tg~~~~~i~--------~~~~V~SlswspdG~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSS---GFDSFVNIWDIENEKRAFQIN--------MPKKLSSLKWNIKGNLLSGTCVGKHMHIID 195 (568)
T ss_pred cEEEEEECCCCCeEEEEE---eCCCeEEEEECCCCcEEEEEe--------cCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence 789999998765 577 789999999999998776664 234456699999999999765 9999
Q ss_pred cCCCcceeeeccCCCce--E----EEEecCCCEEEEEe---------EEEecCC-CeEEEEEcCCCc-e---eEEEccCC
Q 000177 1668 RRNSVPVHRFDQFTDHG--G----GGFHPAGNEVIINS---------EVWDLRK-FRLLRSVPSLDQ-T---TITFNARG 1727 (1922)
Q Consensus 1668 lrtgk~I~kf~gh~~~V--s----VaFSPdG~~LASGS---------eIWDLrT-gklL~tl~gH~~-~---sVaFSPdG 1727 (1922)
+++++.+.++.+|.+.+ . ..|++++.+|++++ +|||+++ .+++.++..+.. . .....++|
T Consensus 196 ~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 196 PRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 99999999999998764 2 23568999998866 4999995 667766653332 2 22334558
Q ss_pred CEEEEEEccC
Q 000177 1728 DVIYAILRRN 1737 (1922)
Q Consensus 1728 ~~LaSgs~~d 1737 (1922)
.++++|..+.
T Consensus 276 ~l~lsGkGD~ 285 (568)
T PTZ00420 276 LIYLIGKGDG 285 (568)
T ss_pred CEEEEEECCC
Confidence 8888875444
No 86
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.9e-18 Score=211.91 Aligned_cols=217 Identities=19% Similarity=0.399 Sum_probs=192.9
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEec
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWN 1580 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWD 1580 (1922)
+.+..|. ..|.|+..-..++.+++|+.|..+-+|.+.....+..|.+|..+|.+| .|+.+..+|++|. +|+|++||
T Consensus 22 ~~~~~hs-aav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl--~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHS-AAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL--TFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhh-hhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee--ecCcchhhhcccccCCceeeee
Confidence 4455788 889999987788999999999999999998888888999999999999 8899999998865 99999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc--ceEEEEcC
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA--YSQIHFSP 1654 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~--~~vVaFSP 1654 (1922)
+.. .+.++++.+| .++.|+|-+.+++.| +.|..+++||++...|.+++. +|. ..++.|+|
T Consensus 99 lee--Ak~vrtLtgh~~~~~sv~f~P~~~~~a~g---Stdtd~~iwD~Rk~Gc~~~~~---------s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 99 LEE--AKIVRTLTGHLLNITSVDFHPYGEFFASG---STDTDLKIWDIRKKGCSHTYK---------SHTRVVDVLRLSP 164 (825)
T ss_pred hhh--hhhhhhhhccccCcceeeeccceEEeccc---cccccceehhhhccCceeeec---------CCcceeEEEeecC
Confidence 998 7888888886 679999999999888 889999999999888988886 454 44599999
Q ss_pred CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeE
Q 000177 1655 SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTI 1721 (1922)
Q Consensus 1655 dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sV 1721 (1922)
+|+++++++ +|||+..|+.++.|..|...+ ++.|||..-.+++|+ ++||+++++++........ .++
T Consensus 165 ~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~ 244 (825)
T KOG0267|consen 165 DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSL 244 (825)
T ss_pred CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceee
Confidence 999999988 999999999999999999888 999999999999999 5999999999887764433 799
Q ss_pred EEccCCCEEEEEEc
Q 000177 1722 TFNARGDVIYAILR 1735 (1922)
Q Consensus 1722 aFSPdG~~LaSgs~ 1735 (1922)
+|+|+|..++++..
T Consensus 245 ~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 245 AFNPDGKIVLSGEQ 258 (825)
T ss_pred eecCCceeeecCch
Confidence 99999999999854
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.74 E-value=1.3e-16 Score=178.73 Aligned_cols=230 Identities=13% Similarity=0.163 Sum_probs=187.5
Q ss_pred ccceeeecCceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcE
Q 000177 1489 RDRQFVYSRFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1489 ~dr~fi~srfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
.++.....++..--..++|. +.|-.++|+| ....+++++.|.+|++||+..+++...+....+.|+. .|+|+|.+
T Consensus 45 ~v~n~e~~r~~~~~~~~gh~-~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i---~wsp~g~~ 120 (313)
T KOG1407|consen 45 SVWNLERDRFRKELVYRGHT-DSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINI---TWSPDGEY 120 (313)
T ss_pred EEEEecchhhhhhhcccCCC-cchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEE---EEcCCCCE
Confidence 33333333555555678999 8999999998 6679999999999999999999999888655555554 58999999
Q ss_pred EEEec-CCcEEEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1568 LLSSS-SQDVHLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1568 LaSSs-DgtVkLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
++.+. |..|...|.++ .+.+...+ ..+-+.|+.++++|+.. ..-|+|.|.....-+.+++++
T Consensus 121 ~~~~~kdD~it~id~r~--~~~~~~~~~~~e~ne~~w~~~nd~Fflt---~GlG~v~ILsypsLkpv~si~--------- 186 (313)
T KOG1407|consen 121 IAVGNKDDRITFIDART--YKIVNEEQFKFEVNEISWNNSNDLFFLT---NGLGCVEILSYPSLKPVQSIK--------- 186 (313)
T ss_pred EEEecCcccEEEEEecc--cceeehhcccceeeeeeecCCCCEEEEe---cCCceEEEEeccccccccccc---------
Confidence 98865 88999999987 55554433 24778899888877776 566899999888888888776
Q ss_pred CCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE-----EEecCCCeEE
Q 000177 1644 GHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE-----VWDLRKFRLL 1710 (1922)
Q Consensus 1644 gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe-----IWDLrTgklL 1710 (1922)
.|+.++ +.|+|+|+++++++ .|||+..--+++.|..+.-+| .+.|+.+|++||++|+ |=++.||..+
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence 677776 88999999999999 899999988999999999889 9999999999999994 6677899999
Q ss_pred EEEcCCCc-eeEEEccCCCEEEEEEcc
Q 000177 1711 RSVPSLDQ-TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1711 ~tl~gH~~-~sVaFSPdG~~LaSgs~~ 1736 (1922)
..++.... ..|+|+|....|+-+..+
T Consensus 267 ~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 267 WEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EEeeccCCceeEEecCCCceeeEEecC
Confidence 99885444 799999999888876543
No 88
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.73 E-value=2.9e-16 Score=182.80 Aligned_cols=270 Identities=16% Similarity=0.202 Sum_probs=198.8
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEE-ecCCcEEEeccCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLS-SSSQDVHLWNASS 1583 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaS-SsDgtVkLWDl~t 1583 (1922)
-|. +.|.++... +++|+||++||+++|||. .|++..++.||+++|.++.|....+ ...+++ |.|.++++|-++.
T Consensus 103 ~hd-DWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHD-DWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cch-hhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 377 899999887 789999999999999997 7999999999999999886633222 223444 6799999999986
Q ss_pred CCCC--cceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec-----------------cccccc
Q 000177 1584 IAGG--PMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS-----------------DTSVNL 1640 (1922)
Q Consensus 1584 ~~gk--~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~-----------------d~s~~~ 1640 (1922)
+... .+..-.|| -++...++|.+|++| +.|.+|+||+..+. ....+. ......
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg---S~D~~lkiWs~~~~-~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG---SWDTMLKIWSVETD-EEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEee---cccceeeecccCCC-ccccccccchhhhhhhhhhhcccccCceE
Confidence 3221 12222355 678889999999999 99999999993211 000000 001111
Q ss_pred cCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCe
Q 000177 1641 TGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFR 1708 (1922)
Q Consensus 1641 ~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgk 1708 (1922)
...||..++ +.|++ ...+.+++ +.||+.+++.+.++.+.....++.++|..+.|++|+ ++||.+++.
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC
Confidence 224777766 88988 66677777 999999999998887776666999999999999999 699999853
Q ss_pred ---EEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc-eeeeecc-CCceEEE
Q 000177 1709 ---LLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS-DIATIPV-DRCVLDF 1781 (1922)
Q Consensus 1709 ---lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys-~IaTidv-kr~I~dL 1781 (1922)
..+++.+|.+ ..+.|||...+++.... ++...++||...-+ ++.++.. ..+|+++
T Consensus 334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S------------------~D~t~klWDvRS~k~plydI~~h~DKvl~v 395 (423)
T KOG0313|consen 334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS------------------YDNTVKLWDVRSTKAPLYDIAGHNDKVLSV 395 (423)
T ss_pred CceeEEeeecchhhhhheecCCCCceEEEEEe------------------cCCeEEEEEeccCCCcceeeccCCceEEEE
Confidence 4577889998 69999999888775521 44566777766655 7777765 4568999
Q ss_pred EEcCCCceEEEEecCCCCCccceEEEEE
Q 000177 1782 ATERTDSFVGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1782 a~SPdds~LAVVe~dds~d~dSsVRLyE 1809 (1922)
.|+..+-. + ++..|..+++++
T Consensus 396 dW~~~~~I-v------SGGaD~~l~i~~ 416 (423)
T KOG0313|consen 396 DWNEGGLI-V------SGGADNKLRIFK 416 (423)
T ss_pred eccCCceE-E------eccCcceEEEec
Confidence 98865432 2 355668888885
No 89
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=5.3e-16 Score=177.07 Aligned_cols=259 Identities=12% Similarity=0.200 Sum_probs=181.2
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--eeec--cCCCCeeEEEeeecCCCcEEEE-ec-CC
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL--ESCT--SHQAPVTLVQSHLSGETQLLLS-SS-SQ 1574 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l--~tL~--gHss~VtsLq~afSpDG~lLaS-Ss-Dg 1574 (1922)
..+|++|. +.|++++|+.||++|+|++.|++|+||++...... +.+. -.-+--+.+ .|+||-+-++. .. ..
T Consensus 79 ~~~LKgH~-~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V--~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 79 VSVLKGHK-KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRV--VFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhhccC-CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEE--EECCCcceEEEEEccCC
Confidence 45688999 99999999999999999999999999999764221 1110 011223566 78998765554 43 66
Q ss_pred cEEEeccCCC-CCCcceEec--------c-c----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc
Q 000177 1575 DVHLWNASSI-AGGPMHSFE--------G-C----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL 1640 (1922)
Q Consensus 1575 tVkLWDl~t~-~gk~l~tf~--------g-h----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~ 1640 (1922)
++++|.+... .|...+.+. . | -.+-...++++|+++ +.|.+|.+||++ |+.+.++...
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa---s~dt~i~lw~lk-Gq~L~~idtn---- 227 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA---SLDTKICLWDLK-GQLLQSIDTN---- 227 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe---cCCCcEEEEecC-Cceeeeeccc----
Confidence 7999987541 122222111 1 1 234445567899999 889999999999 8888887511
Q ss_pred cCCCCcceEEEEcCCCCeEeecc-----EEEEcCC---C-----cceeeeccCCCce-EEEEecCCCEEEEEe-----EE
Q 000177 1641 TGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN---S-----VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EV 1701 (1922)
Q Consensus 1641 ~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt---g-----k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eI 1701 (1922)
.-....++.||+|+++++++ ++|.+-- | +.+..+.||...+ ..+|+|+...+++.| +|
T Consensus 228 ---q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri 304 (420)
T KOG2096|consen 228 ---QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI 304 (420)
T ss_pred ---cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE
Confidence 11122389999999999988 8998753 2 2356678999988 999999999999999 59
Q ss_pred EecCC-------CeEEEEEc--CC----CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCce
Q 000177 1702 WDLRK-------FRLLRSVP--SL----DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSD 1768 (1922)
Q Consensus 1702 WDLrT-------gklL~tl~--gH----~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~ 1768 (1922)
||+.- -+.+++.+ -| ....+..+|+|+.++.+. .+.++.+.+.+...
T Consensus 305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~--------------------gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF--------------------GSDLKVFASEDGKD 364 (420)
T ss_pred eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec--------------------CCceEEEEcccCcc
Confidence 99752 22333332 12 126899999999999883 34455555544443
Q ss_pred eeeecc--CCceEEEEEcCCCceEEEE
Q 000177 1769 IATIPV--DRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1769 IaTidv--kr~I~dLa~SPdds~LAVV 1793 (1922)
..+.+. ...|..++|+++|++++.+
T Consensus 365 ~~~~e~~h~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 365 YPELEDIHSTTISSISYSSDGKYIATC 391 (420)
T ss_pred chhHHHhhcCceeeEEecCCCcEEeee
Confidence 333322 4569999999999999977
No 90
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.73 E-value=2.8e-17 Score=186.49 Aligned_cols=223 Identities=17% Similarity=0.268 Sum_probs=179.3
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEecCC-c
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSSSSQ-D 1575 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSSsDg-t 1575 (1922)
..+++|-+|. +.|+++.|+|....|++|+.|++||+||+.+....+.+ -....+|.+| +|+|.|.+|+.|.|. +
T Consensus 163 PvIRTlYDH~-devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsi--SfHPsGefllvgTdHp~ 239 (430)
T KOG0640|consen 163 PVIRTLYDHV-DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSI--SFHPSGEFLLVGTDHPT 239 (430)
T ss_pred ceEeehhhcc-CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeE--eecCCCceEEEecCCCc
Confidence 3578999999 99999999999999999999999999999765433322 2346789999 999999999998765 7
Q ss_pred EEEeccCCCCCCcceEe-------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1576 VHLWNASSIAGGPMHSF-------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf-------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
++|||+++ .+|...- .+++++.+++.+++.+++ +.||.|+|||--+++|+.++.. ...+..+.
T Consensus 240 ~rlYdv~T--~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTa---SkDG~IklwDGVS~rCv~t~~~-----AH~gsevc 309 (430)
T KOG0640|consen 240 LRLYDVNT--YQCFVSANPDDQHTGAITQVRYSSTGSLYVTA---SKDGAIKLWDGVSNRCVRTIGN-----AHGGSEVC 309 (430)
T ss_pred eeEEeccc--eeEeeecCcccccccceeEEEecCCccEEEEe---ccCCcEEeeccccHHHHHHHHh-----hcCCceee
Confidence 99999998 5543322 125889999999999999 9999999999999999999861 01122344
Q ss_pred EEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC--ce----EEEEecCCCEEEEEeE------EEecCCCeEEE
Q 000177 1649 QIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD--HG----GGGFHPAGNEVIINSE------VWDLRKFRLLR 1711 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~--~V----sVaFSPdG~~LASGSe------IWDLrTgklL~ 1711 (1922)
.+.|..+|+++++.| ++|.+.+++++..|.|... .. ...|+.+..|++.-.+ -||-++...+.
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA 389 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence 488999999999998 9999999999999976521 11 5678888888876653 79999987666
Q ss_pred EEc-CCCc--eeEEEccCCCEEEEEE
Q 000177 1712 SVP-SLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1712 tl~-gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
-+. +|.. ..+.-||.+..+++++
T Consensus 390 l~slgHn~a~R~i~HSP~~p~FmTcs 415 (430)
T KOG0640|consen 390 LLSLGHNGAVRWIVHSPVEPAFMTCS 415 (430)
T ss_pred hcccCCCCCceEEEeCCCCCceeeec
Confidence 555 6666 7889999999999885
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.4e-16 Score=191.76 Aligned_cols=257 Identities=16% Similarity=0.212 Sum_probs=203.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceE
Q 000177 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~t 1591 (1922)
+-+.|+ ..+.|++|.. ..|.+|+..++........+...|+++ .|+++|.+|+.| .+|.|.|||... .+.+..
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv--~ws~~G~~LavG~~~g~v~iwD~~~--~k~~~~ 254 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSV--KWSPDGSHLAVGTSDGTVQIWDVKE--QKKTRT 254 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEE--EECCCCCEEEEeecCCeEEEEehhh--cccccc
Confidence 456788 4456666654 469999999998766666668999999 889999999997 599999999987 666777
Q ss_pred ecc-c----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEeecc-
Q 000177 1592 FEG-C----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG- 1663 (1922)
Q Consensus 1592 f~g-h----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg- 1663 (1922)
+.+ | -+++|. +..+.+| +.|+.|.+||++..+..... ..+|...+ +.|++++.+++++|
T Consensus 255 ~~~~h~~rvg~laW~--~~~lssG---sr~~~I~~~dvR~~~~~~~~--------~~~H~qeVCgLkws~d~~~lASGgn 321 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWN--SSVLSSG---SRDGKILNHDVRISQHVVST--------LQGHRQEVCGLKWSPDGNQLASGGN 321 (484)
T ss_pred ccCCcCceeEEEecc--CceEEEe---cCCCcEEEEEEecchhhhhh--------hhcccceeeeeEECCCCCeeccCCC
Confidence 766 4 567887 6677777 89999999999987765541 12455444 99999999999999
Q ss_pred ----EEEEcCCCcceeeeccCCCce-EEEEecC-CCEEEEEe-------EEEecCCCeEEEEEcCCCc-eeEEEccCCCE
Q 000177 1664 ----ILWDRRNSVPVHRFDQFTDHG-GGGFHPA-GNEVIINS-------EVWDLRKFRLLRSVPSLDQ-TTITFNARGDV 1729 (1922)
Q Consensus 1664 ----rLWDlrtgk~I~kf~gh~~~V-sVaFSPd-G~~LASGS-------eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~ 1729 (1922)
.|||.....++.+|..|...| .++|+|- ...||+|+ ++||..+++.+..+....+ +++.|++..+-
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kE 401 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKE 401 (484)
T ss_pred ccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCE
Confidence 899998889999999999999 9999995 56888888 5999999999998875555 99999999988
Q ss_pred EEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1730 IYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1730 LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
|+++.... ...+.+|.-.+++.+..+.. ..+|..++++|++..+++.. .|.++|+|
T Consensus 402 i~sthG~s-----------------~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a------~DETlrfw 458 (484)
T KOG0305|consen 402 LLSTHGYS-----------------ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGA------ADETLRFW 458 (484)
T ss_pred EEEecCCC-----------------CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEec------ccCcEEec
Confidence 88874321 12355666666677776655 34599999999999999774 34578888
Q ss_pred Eec
Q 000177 1809 EIG 1811 (1922)
Q Consensus 1809 EVG 1811 (1922)
.+-
T Consensus 459 ~~f 461 (484)
T KOG0305|consen 459 NLF 461 (484)
T ss_pred ccc
Confidence 763
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=3.2e-16 Score=179.23 Aligned_cols=222 Identities=15% Similarity=0.231 Sum_probs=179.1
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC---cEEEEecC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET---QLLLSSSS 1573 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG---~lLaSSsD 1573 (1922)
++.|+..+..|. +.|++++.+ +.++|+||.|-+|+|||+.+...+..+..|.+.|+++ .|.++- .+|.++.|
T Consensus 32 ~l~~lF~~~aH~-~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL--~F~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 32 TLKPLFAFSAHA-GSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITAL--KFYPPLSKSHLLSGSDD 106 (362)
T ss_pred eeeccccccccc-cceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEE--EecCCcchhheeeecCC
Confidence 456778889999 999999997 8999999999999999999999999999999999999 666665 44444679
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
|.|.+|+... ..++.++++| +.++.||.++.-++. +.|+.+++||+-+|+.-..++ ..+....
T Consensus 107 G~i~iw~~~~--W~~~~slK~H~~~Vt~lsiHPS~KLALsV---g~D~~lr~WNLV~Gr~a~v~~--------L~~~at~ 173 (362)
T KOG0294|consen 107 GHIIIWRVGS--WELLKSLKAHKGQVTDLSIHPSGKLALSV---GGDQVLRTWNLVRGRVAFVLN--------LKNKATL 173 (362)
T ss_pred CcEEEEEcCC--eEEeeeecccccccceeEecCCCceEEEE---cCCceeeeehhhcCccceeec--------cCCccee
Confidence 9999999988 8888999876 789999999999998 889999999999988766654 3455556
Q ss_pred EEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--
Q 000177 1650 IHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-- 1718 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-- 1718 (1922)
+.|+|.|.+++..+ -+|.+.+.+....+.......++.|-. +.++++|. .+||..+..++..+.+|..
T Consensus 174 v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RV 252 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRV 252 (362)
T ss_pred eEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecC-CceEEEecCCceEEEeccCCCccceeeecchhhe
Confidence 99999999777666 688887766655554443333666654 55666666 4999999999999999988
Q ss_pred eeEE--EccCCCEEEEEEccC
Q 000177 1719 TTIT--FNARGDVIYAILRRN 1737 (1922)
Q Consensus 1719 ~sVa--FSPdG~~LaSgs~~d 1737 (1922)
..+. -+|.+.+|++++.+.
T Consensus 253 K~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 253 KDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred eeeEEEecCCceEEEEeccCc
Confidence 3443 477889999986433
No 93
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.4e-16 Score=170.00 Aligned_cols=221 Identities=18% Similarity=0.273 Sum_probs=168.7
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-----eeeeccCCCCeeEEEee--ecCCCcEEEEec--CCc
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP-----LESCTSHQAPVTLVQSH--LSGETQLLLSSS--SQD 1575 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~-----l~tL~gHss~VtsLq~a--fSpDG~lLaSSs--Dgt 1575 (1922)
+.|. +.|+|.+|||+|++|+|||.|++|++.-.+...+ ...|.-|.+.|..++|- ....+.+|+++. |..
T Consensus 86 khhk-gsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 86 KHHK-GSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred cccC-ccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 3577 9999999999999999999999999976543322 24678899999999541 122467888854 777
Q ss_pred EEEeccCCCCCCcceEecccee---EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC-CCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFEGCKA---ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG-RGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh~s---VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~-~gh~~~vVa 1651 (1922)
|.+-|... ++..+.+.+|+. .-++-+|-+|++| +.|++|++||++-..++.++.. .....+ ....+..++
T Consensus 165 iy~tdc~~--g~~~~a~sghtghilalyswn~~m~~sg---sqdktirfwdlrv~~~v~~l~~-~~~~~glessavaav~ 238 (350)
T KOG0641|consen 165 IYITDCGR--GQGFHALSGHTGHILALYSWNGAMFASG---SQDKTIRFWDLRVNSCVNTLDN-DFHDGGLESSAVAAVA 238 (350)
T ss_pred EEEeecCC--CCcceeecCCcccEEEEEEecCcEEEcc---CCCceEEEEeeeccceeeeccC-cccCCCcccceeEEEE
Confidence 77777776 888999988732 3355678999998 9999999999999999988751 111111 112334499
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeE-----EEEEcC
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRL-----LRSVPS 1715 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgkl-----L~tl~g 1715 (1922)
..|.|++|+++- .+||++-+++|+.|..|...| ++.|+|.-.|+++++ ++-|++ |.+ +..+..
T Consensus 239 vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~e 317 (350)
T KOG0641|consen 239 VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAE 317 (350)
T ss_pred ECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEe
Confidence 999999999876 899999999999999999999 999999999999999 466665 322 334445
Q ss_pred CCc--eeEEEccCCCEEEEE
Q 000177 1716 LDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSg 1733 (1922)
|.. -.+.|+|+.-.+++.
T Consensus 318 hkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred ccCceEEEEecCccceeeec
Confidence 554 578899987666655
No 94
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1e-15 Score=175.90 Aligned_cols=227 Identities=20% Similarity=0.283 Sum_probs=181.8
Q ss_pred eecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1494 VYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSH--TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1494 i~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~--DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
...+.+..+++..+. -+|..++|....+.++.++. |.+|+..++.+.+.++.|.||...|++| +.+|-+..++++
T Consensus 42 d~~~g~~~~ti~skk-yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL--~~sP~~d~FlS~ 118 (311)
T KOG1446|consen 42 DSLSGKQVKTINSKK-YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSL--SVSPKDDTFLSS 118 (311)
T ss_pred EcCCCceeeEeeccc-ccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEE--EecCCCCeEEec
Confidence 344667778887777 78999999998888888887 8999999999999999999999999999 788887777775
Q ss_pred -cCCcEEEeccCCCCCCcceE--eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC--ceeeeeccccccccCCCCc
Q 000177 1572 -SSQDVHLWNASSIAGGPMHS--FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTY--QLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~t--f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg--k~i~tL~d~s~~~~~~gh~ 1646 (1922)
-|++|++||++. .++... +.+-..++|.|+|-+|+++ .....|++||++.. .+..++.-. . ..+.
T Consensus 119 S~D~tvrLWDlR~--~~cqg~l~~~~~pi~AfDp~GLifA~~---~~~~~IkLyD~Rs~dkgPF~tf~i~----~-~~~~ 188 (311)
T KOG1446|consen 119 SLDKTVRLWDLRV--KKCQGLLNLSGRPIAAFDPEGLIFALA---NGSELIKLYDLRSFDKGPFTTFSIT----D-NDEA 188 (311)
T ss_pred ccCCeEEeeEecC--CCCceEEecCCCcceeECCCCcEEEEe---cCCCeEEEEEecccCCCCceeEccC----C-CCcc
Confidence 599999999997 455433 3445778999999999998 44459999999964 334444300 0 1122
Q ss_pred c-eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce----EEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1647 Y-SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG----GGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1647 ~-~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V----sVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
. ..+.|||+|++++.+. ++.|.-+|..+.+|.++.+.. ..+|+|+|++|++|+ .+|++++++.+.
T Consensus 189 ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 2 3399999999888443 889999999999998876543 899999999999999 399999999999
Q ss_pred EEcCC-Cc--eeEEEccCCCEEEEE
Q 000177 1712 SVPSL-DQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1712 tl~gH-~~--~sVaFSPdG~~LaSg 1733 (1922)
.+.+. .. .++.|||.-.+++++
T Consensus 269 ~~~~~~~~~~~~~~fnP~~~mf~sa 293 (311)
T KOG1446|consen 269 VLRGPNGGPVSCVRFNPRYAMFVSA 293 (311)
T ss_pred EecCCCCCCccccccCCceeeeeec
Confidence 99874 33 799999988777776
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=1.1e-16 Score=195.08 Aligned_cols=218 Identities=23% Similarity=0.317 Sum_probs=176.4
Q ss_pred EEEEc-CCCCEEEEEeCCCcEEEEECCCCC------ceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCC
Q 000177 1514 CITFL-GDSSHIAVGSHTKELKIFDSNSSS------PLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIA 1585 (1922)
Q Consensus 1514 ~LaFS-PDG~lLASGS~DGtIkIWDl~tgk------~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~ 1585 (1922)
.+..+ |.+++|+|||.||.|++|++..-. .+.++..|...|+.+ ....+++.|++ |+|.+|++|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDi--iL~~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDI--ILCGNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhH--HhhcCCCceEEecCCceEEEeecccCc
Confidence 44555 367789999999999999985322 366788999999999 77788877777 679999999998732
Q ss_pred CCcceEeccc----eeEEE-cCCCCEEEEeecCCCCCeEEEEECCCC--ceeeeeccccccccCCCCcceE--EEEcCCC
Q 000177 1586 GGPMHSFEGC----KAARF-SNSGNLFAALPTETSDRGILLYDIQTY--QLEAKLSDTSVNLTGRGHAYSQ--IHFSPSD 1656 (1922)
Q Consensus 1586 gk~l~tf~gh----~sVaF-SPDG~~LaSgS~~S~DgtIrIWDlrTg--k~i~tL~d~s~~~~~~gh~~~v--VaFSPdG 1656 (1922)
.-|+.++..| .|+++ -++...+++| +-|+.|.+||+.++ +.+.++.....+....|+...+ ++.+++|
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSg---GLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASG---GLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEec---CCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence 2456666655 78888 7788888888 89999999999988 4455554222222222454444 8888999
Q ss_pred CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEE
Q 000177 1657 TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITF 1723 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaF 1723 (1922)
..|+++| ++||.++++.+.++.||...| .+..+++|..++++| ++||+...+++.++..|.. |.+..
T Consensus 184 t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS 263 (735)
T ss_pred eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEee
Confidence 8999988 999999999999999999999 899999999999999 7999999999999998877 89999
Q ss_pred ccCCCEEEEEEcc
Q 000177 1724 NARGDVIYAILRR 1736 (1922)
Q Consensus 1724 SPdG~~LaSgs~~ 1736 (1922)
+|+=.++|+|.++
T Consensus 264 ~~sf~~vYsG~rd 276 (735)
T KOG0308|consen 264 SPSFTHVYSGGRD 276 (735)
T ss_pred CCCcceEEecCCC
Confidence 9999999998543
No 96
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.70 E-value=2.3e-16 Score=188.10 Aligned_cols=229 Identities=16% Similarity=0.267 Sum_probs=171.5
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce------------eeeccCCCCeeEEEeeecCCC
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL------------ESCTSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l------------~tL~gHss~VtsLq~afSpDG 1565 (1922)
|+.+.-...|. |++++|++.|..|++.+....++|+|-+..... ..-+||...++|. +|+|+.
T Consensus 206 fr~l~P~E~h~---i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g--~whP~~ 280 (641)
T KOG0772|consen 206 FRQLQPCETHQ---INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCG--CWHPDN 280 (641)
T ss_pred hhccCcccccc---cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecc--ccccCc
Confidence 56566555676 999999999999998888899999996543322 2237899999999 667764
Q ss_pred --cEEEEecCCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1566 --QLLLSSSSQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1566 --~lLaSSsDgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
.+|.++.|++++|||+... .+.+..|+. .+.|+|+|+|+.|++| ..||.|.+||......-..+.
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~-k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAag---c~DGSIQ~W~~~~~~v~p~~~ 356 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNT-KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAG---CLDGSIQIWDKGSRTVRPVMK 356 (641)
T ss_pred ccceEEecCCCcEEEEecCCc-hhheeEEeeccCCCcccCceeeecCCCcchhhhc---ccCCceeeeecCCcccccceE
Confidence 4666678999999999862 233344432 3789999999999998 889999999986432211111
Q ss_pred cccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC-cceeeeccCCCce---EEEEecCCCEEEEEe------
Q 000177 1635 DTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS-VPVHRFDQFTDHG---GGGFHPAGNEVIINS------ 1699 (1922)
Q Consensus 1635 d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg-k~I~kf~gh~~~V---sVaFSPdG~~LASGS------ 1699 (1922)
-.... ..+..+.+++||++|++|++-| ++||+++. ++++.+.+..... .++|||+.+.|++|+
T Consensus 357 vk~AH--~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~ 434 (641)
T KOG0772|consen 357 VKDAH--LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM 434 (641)
T ss_pred eeecc--CCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC
Confidence 00000 0133556799999999999888 99999975 5888887776554 899999999999998
Q ss_pred -----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1700 -----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1700 -----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
-+||..++..+.++.-... ..+.|||.=+.|++++.+.
T Consensus 435 ~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 435 TAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG 479 (641)
T ss_pred CCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC
Confidence 1889999999988874444 5789999888888775544
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=2.4e-16 Score=197.95 Aligned_cols=201 Identities=20% Similarity=0.330 Sum_probs=160.4
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC-CCcEEEEec-CCc
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG-ETQLLLSSS-SQD 1575 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp-DG~lLaSSs-Dgt 1575 (1922)
-+|++.|+||. +.|..+.||.+ ++|++.|.|.|||+|++...+|+.+|. |...|+|| .|+| |.+|+++|+ |+.
T Consensus 359 ekP~~ef~GHt-~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV--aFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 359 EKPFCEFKGHT-ADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV--AFNPVDDRYFISGSLDGK 433 (712)
T ss_pred ccchhhhhccc-hhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE--EecccCCCcEeecccccc
Confidence 36778899999 99999999975 589999999999999999999999997 99999999 7777 678888876 999
Q ss_pred EEEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc-cCCCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL-TGRGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~-~~~gh~~~vVa 1651 (1922)
|+||++.. .+.+.... -+++++|.|+|+..+.| +.+|.+++|++..-+....+.-..... ...++.+.-+.
T Consensus 434 vRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdGk~avIG---t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q 508 (712)
T KOG0283|consen 434 VRLWSISD--KKVVDWNDLRDLITAVCYSPDGKGAVIG---TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ 508 (712)
T ss_pred eEEeecCc--CeeEeehhhhhhheeEEeccCCceEEEE---EeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE
Confidence 99999986 33333222 25999999999999999 888999999999877766654111111 11233445588
Q ss_pred EcCCCC--eEeecc----EEEEcCCCcceeeeccCCCc---eEEEEecCCCEEEEEeE-----EEecCCCe
Q 000177 1652 FSPSDT--MLLWNG----ILWDRRNSVPVHRFDQFTDH---GGGGFHPAGNEVIINSE-----VWDLRKFR 1708 (1922)
Q Consensus 1652 FSPdG~--lLaSgg----rLWDlrtgk~I~kf~gh~~~---VsVaFSPdG~~LASGSe-----IWDLrTgk 1708 (1922)
|.|... +|+|.. +|||.++..++++|+|+.+. +...|+.||++|+++++ ||++....
T Consensus 509 ~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 509 FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 887654 666555 99999999999999988654 38899999999999994 99985443
No 98
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=5.7e-16 Score=173.12 Aligned_cols=210 Identities=20% Similarity=0.296 Sum_probs=161.9
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCCceeeeccCCCCeeEEEeeecCC-Cc-EEEEecCCcEEEeccCCCC
Q 000177 1510 ALLTCITFLG-DSSHIAVGSHTKELKIFDSN-SSSPLESCTSHQAPVTLVQSHLSGE-TQ-LLLSSSSQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~-tgk~l~tL~gHss~VtsLq~afSpD-G~-lLaSSsDgtVkLWDl~t~~ 1585 (1922)
+.+..++|++ ..+.+++++.||+++|||+. ..+++..++.|...|.++ .|++. ++ +|.+|.|++||||+...
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Sv--dwn~~~r~~~ltsSWD~TiKLW~~~r-- 136 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSV--DWNTVRRRIFLTSSWDGTIKLWDPNR-- 136 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEe--ccccccceeEEeeccCCceEeecCCC--
Confidence 7899999998 45689999999999999964 346788999999999999 55553 33 44446699999999987
Q ss_pred CCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe-E
Q 000177 1586 GGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM-L 1659 (1922)
Q Consensus 1586 gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l-L 1659 (1922)
.+.+++|.+| ....|+| .++.|+++ +.|+++++||++.......++ .+.....++.|+.-+.. +
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~---Sgd~~l~lwdvr~~gk~~~i~-------ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASA---SGDGTLRLWDVRSPGKFMSIE-------AHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEc---cCCceEEEEEecCCCceeEEE-------eccceeEeecccccCCcEE
Confidence 7789999997 4578999 57899998 899999999998644333354 12233445788886654 5
Q ss_pred eecc-----EEEEcCCC-cceeeeccCCCce-EEEEecCC-CEEEEEe-----EEEecCCC-eEEEEEcCCCc--eeEEE
Q 000177 1660 LWNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAG-NEVIINS-----EVWDLRKF-RLLRSVPSLDQ--TTITF 1723 (1922)
Q Consensus 1660 aSgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG-~~LASGS-----eIWDLrTg-klL~tl~gH~~--~sVaF 1723 (1922)
+|++ +.||+++- .++..+.+|.-.| .+.|||.. ..|++++ +|||.... .++.++.-|.. +.+.|
T Consensus 207 ~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDW 286 (311)
T ss_pred EecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccc
Confidence 5666 99999975 4888999999888 99999975 5778887 69999854 45666666665 78888
Q ss_pred ccC-CCEEEEE
Q 000177 1724 NAR-GDVIYAI 1733 (1922)
Q Consensus 1724 SPd-G~~LaSg 1733 (1922)
|+. +.++++.
T Consensus 287 s~~~~~~vAs~ 297 (311)
T KOG0277|consen 287 SLFDPGQVAST 297 (311)
T ss_pred ccccCceeeec
Confidence 885 4455554
No 99
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.1e-15 Score=181.27 Aligned_cols=269 Identities=17% Similarity=0.245 Sum_probs=199.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CCceeeeccCCCCeeEEEeeecCCCc-EEEEec-CCcEEEeccCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNS--SSPLESCTSHQAPVTLVQSHLSGETQ-LLLSSS-SQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t--gk~l~tL~gHss~VtsLq~afSpDG~-lLaSSs-DgtVkLWDl~t~~ 1585 (1922)
+.|+++.|+|.-.+|++++.||+++||.++. ...+..+.--..+|.+. .|.|+|+ .+++++ ....+.||+.+..
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a--~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKA--EFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCcccee--eecCCCceEEEecccceEEEEeeccccc
Confidence 6899999999999999999999999999863 33455555557899999 8899998 666654 7789999998732
Q ss_pred CCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1586 GGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1586 gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
-..+....+ ......+|++++|+.. +..|.|.+....|+..+.+++ ....+..++|+.+++.|+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~---G~~G~I~lLhakT~eli~s~K--------ieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIA---GNNGHIHLLHAKTKELITSFK--------IEGVVSDFTFSSDSKELL 360 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEc---ccCceEEeehhhhhhhhheee--------eccEEeeEEEecCCcEEE
Confidence 222333333 3567889999999998 888999999999999998886 234444599999998877
Q ss_pred ecc-----EEEEcCCCcceeeeccCCC--ceEEEEecCCCEEEEEe-----EEEecCC------CeEEEEEcCCCc--ee
Q 000177 1661 WNG-----ILWDRRNSVPVHRFDQFTD--HGGGGFHPAGNEVIINS-----EVWDLRK------FRLLRSVPSLDQ--TT 1720 (1922)
Q Consensus 1661 Sgg-----rLWDlrtgk~I~kf~gh~~--~VsVaFSPdG~~LASGS-----eIWDLrT------gklL~tl~gH~~--~s 1720 (1922)
..+ .+||+++..++++|..... ..+++.+++|.|||+|| .|||..+ -++++++..... ++
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 554 8999999999999965433 33889999999999999 3787553 355666654443 79
Q ss_pred EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCC
Q 000177 1721 ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQED 1800 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d 1800 (1922)
+.|||++++|+.+++....- -+-+.-|..+.|+.|...+ .+ -..+.+++|+|.+.++|+..
T Consensus 441 l~Fn~d~qiLAiaS~~~kna------lrLVHvPS~TVFsNfP~~n-~~------vg~vtc~aFSP~sG~lAvGN------ 501 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNA------LRLVHVPSCTVFSNFPTSN-TK------VGHVTCMAFSPNSGYLAVGN------ 501 (514)
T ss_pred eeeCcchhhhhhhhhccccc------eEEEeccceeeeccCCCCC-Cc------ccceEEEEecCCCceEEeec------
Confidence 99999999999885433211 1233344444555444331 11 23589999999999999752
Q ss_pred ccceEEEEEe
Q 000177 1801 MFSSARIYEI 1810 (1922)
Q Consensus 1801 ~dSsVRLyEV 1810 (1922)
....+.+|.+
T Consensus 502 e~grv~l~kL 511 (514)
T KOG2055|consen 502 EAGRVHLFKL 511 (514)
T ss_pred CCCceeeEee
Confidence 3367888875
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=9e-16 Score=174.38 Aligned_cols=273 Identities=18% Similarity=0.259 Sum_probs=198.9
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCc
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQD 1575 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgt 1575 (1922)
.|+.++.|.||. ++||.++-......+.++|.|.+.+||.+++|.|+.+|.||.+.|++| .|++.+.++++ +.|++
T Consensus 137 ~~~lvre~~GHk-DGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsi--kfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 137 KFRLVRELEGHK-DGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSI--KFHNSGLLLLTASGDET 213 (481)
T ss_pred eEeehhhhcccc-cceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeE--EeccccceEEEccCCcc
Confidence 356677889999 999999988877799999999999999999999999999999999999 89999999999 56999
Q ss_pred EEEeccCCCCCCcc----eEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--
Q 000177 1576 VHLWNASSIAGGPM----HSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ-- 1649 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l----~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v-- 1649 (1922)
..||...-.-..|. ....+..-+.-+-.......++..+...+|++ ++..|. +|...+
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv-------Pl~~lt---------gH~~vV~a 277 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV-------PLMRLT---------GHRAVVSA 277 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee-------eeeeee---------ccccceEe
Confidence 99998432000011 01111011111111111122111122223332 223333 565555
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCC-CeEEEEEcCCC
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK-FRLLRSVPSLD 1717 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT-gklL~tl~gH~ 1717 (1922)
..|-..|+.+++++ .+||+.+|.+++.+.||.... .++-||+.+.+++.+ ++||++. -+.+..|.||.
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc
Confidence 66888999999988 899999999999999999888 889999999999999 5999984 35577788998
Q ss_pred c--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC-CceeeeeccCCceEEEEEcCCCceEEEEe
Q 000177 1718 Q--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN-YSDIATIPVDRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1718 ~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d-ys~IaTidvkr~I~dLa~SPdds~LAVVe 1794 (1922)
. +++.|+-+.+ +++++. +..+++||-.+ .++++++....+++.++++..+..||+-
T Consensus 358 dtVTS~vF~~dd~-vVSgSD-------------------DrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiP- 416 (481)
T KOG0300|consen 358 DTVTSVVFNTDDR-VVSGSD-------------------DRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIP- 416 (481)
T ss_pred cceeEEEEecCCc-eeecCC-------------------CceEEEeeeccccCcceeeecCCccceeEeecCCceEEec-
Confidence 7 7999998754 455532 23466777554 5679999999999999999999888854
Q ss_pred cCCCCCccceEEEEEecCCC
Q 000177 1795 MDDQEDMFSSARIYEIGRRR 1814 (1922)
Q Consensus 1795 ~dds~d~dSsVRLyEVGr~r 1814 (1922)
.++ ..||+|++...+
T Consensus 417 ---hDN--RqvRlfDlnG~R 431 (481)
T KOG0300|consen 417 ---HDN--RQVRLFDLNGNR 431 (481)
T ss_pred ---cCC--ceEEEEecCCCc
Confidence 122 679999875544
No 101
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.9e-15 Score=168.92 Aligned_cols=217 Identities=12% Similarity=0.182 Sum_probs=163.0
Q ss_pred ceeeEEec-CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--CceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1498 FRPWRTCR-DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS--SPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1498 frpirtLr-gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg--k~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
+....++. +|+ ..|.+|+|+|.|++|++||.|.++.||.-..+ +++.++.||...|.++ +|+++|.+|++|+ |
T Consensus 50 ~~ck~vld~~hk-rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~V--aws~sG~~LATCSRD 126 (312)
T KOG0645|consen 50 WTCKTVLDDGHK-RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCV--AWSASGNYLATCSRD 126 (312)
T ss_pred EEEEEeccccch-heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEE--EEcCCCCEEEEeeCC
Confidence 45555565 499 99999999999999999999999999987644 6788999999999999 8999999999965 9
Q ss_pred CcEEEeccCCC-CCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECC---CCceeeeeccccccccCCCC
Q 000177 1574 QDVHLWNASSI-AGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQ---TYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1574 gtVkLWDl~t~-~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr---Tgk~i~tL~d~s~~~~~~gh 1645 (1922)
+.|.||.+... ...++..+++| ..+.|||....|+++ +.|++|++|+-. ...+++++. +|
T Consensus 127 KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~---SYDnTIk~~~~~~dddW~c~~tl~---------g~ 194 (312)
T KOG0645|consen 127 KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC---SYDNTIKVYRDEDDDDWECVQTLD---------GH 194 (312)
T ss_pred CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe---ccCCeEEEEeecCCCCeeEEEEec---------Cc
Confidence 99999999741 23456667766 679999999999999 999999999876 345777775 55
Q ss_pred --cceEEEEcCCCCeEeecc-----EEEEcCCCcceeeecc-CCCce-EEEEecCCCEEEEEe-----EEEecCC-----
Q 000177 1646 --AYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ-FTDHG-GGGFHPAGNEVIINS-----EVWDLRK----- 1706 (1922)
Q Consensus 1646 --~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g-h~~~V-sVaFSPdG~~LASGS-----eIWDLrT----- 1706 (1922)
++.+++|+|.|..+++++ +||-..+. +.+ |...+ .+.|. + ..|++++ +++.-..
T Consensus 195 ~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p 267 (312)
T KOG0645|consen 195 ENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEP 267 (312)
T ss_pred cceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCc
Confidence 556699999999999888 89986632 222 33444 57887 3 4566666 3443322
Q ss_pred -CeEEE-EEcCCCc--eeEEEccC-CCEEEEEEcc
Q 000177 1707 -FRLLR-SVPSLDQ--TTITFNAR-GDVIYAILRR 1736 (1922)
Q Consensus 1707 -gklL~-tl~gH~~--~sVaFSPd-G~~LaSgs~~ 1736 (1922)
.+++. .-..|.. ++|.|+|. ...|+++..+
T Consensus 268 ~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD 302 (312)
T KOG0645|consen 268 SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD 302 (312)
T ss_pred hHHHHHhhhcccccccceEEEcCCCCCceeecCCC
Confidence 12222 2224544 99999995 5667776433
No 102
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=5.9e-17 Score=199.08 Aligned_cols=189 Identities=19% Similarity=0.325 Sum_probs=167.9
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
...+..+..|.+|. ++|.|+.|+++..+|+.|+.+|+||+||+..++.++++.||...+.+| .|+|-+.|.++++ |
T Consensus 57 i~kp~~i~S~~~he-spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv--~f~P~~~~~a~gStd 133 (825)
T KOG0267|consen 57 IGKPNAITSLTGHE-SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSV--DFHPYGEFFASGSTD 133 (825)
T ss_pred ccCCchhheeeccC-CcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCccee--eeccceEEecccccc
Confidence 34555566789999 999999999999999999999999999999999999999999999999 7999999998854 9
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce-
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS- 1648 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~- 1648 (1922)
..+++||++. ..|.+.+.+| .++.|+|+|++++.+ +.|.+++|||...|+....|+ +|...
T Consensus 134 td~~iwD~Rk--~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g---~ed~tvki~d~~agk~~~ef~---------~~e~~v 199 (825)
T KOG0267|consen 134 TDLKIWDIRK--KGCSHTYKSHTRVVDVLRLSPDGRWVASG---GEDNTVKIWDLTAGKLSKEFK---------SHEGKV 199 (825)
T ss_pred ccceehhhhc--cCceeeecCCcceeEEEeecCCCceeecc---CCcceeeeecccccccccccc---------cccccc
Confidence 9999999997 6789999876 778999999999998 889999999999999988886 44444
Q ss_pred -EEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE
Q 000177 1649 -QIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE 1700 (1922)
Q Consensus 1649 -vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe 1700 (1922)
.+.|+|..-++.+++ ++||+++...|.........+ +..|+|+|..+++|.+
T Consensus 200 ~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 200 QSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred cccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence 488999998888888 999999988888777777777 9999999999999884
No 103
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.7e-14 Score=154.33 Aligned_cols=275 Identities=15% Similarity=0.195 Sum_probs=198.7
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC------CC-----Cc-e---eeeccCCCCeeEEEee
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN------SS-----SP-L---ESCTSHQAPVTLVQSH 1560 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~------tg-----k~-l---~tL~gHss~VtsLq~a 1560 (1922)
..|..+.+|... ..|.+++|+|.|.+.++||..++++|.... .+ ++ . +.-+.|.+.|+|. +
T Consensus 21 ~~f~~i~~l~ds--qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~--~ 96 (350)
T KOG0641|consen 21 KHFEAINILEDS--QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCT--A 96 (350)
T ss_pred cceEEEEEecch--hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEE--E
Confidence 346667777653 479999999999999999999999987542 11 11 1 1225689999999 8
Q ss_pred ecCCCcEEEEec-CCcEEEeccCCCCCC---cceEecc----ceeEEEcCC----CCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1561 LSGETQLLLSSS-SQDVHLWNASSIAGG---PMHSFEG----CKAARFSNS----GNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1561 fSpDG~lLaSSs-DgtVkLWDl~t~~gk---~l~tf~g----h~sVaFSPD----G~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
|+|+|++|++|+ |.+|++.-++..... .-..|.- ++.++|-.+ +..++++ +..|..|.+-|..+|+
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~--gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA--GAGDCKIYITDCGRGQ 174 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec--CCCcceEEEeecCCCC
Confidence 899999999965 999999877651111 1123332 377888653 4567766 4568889999999999
Q ss_pred eeeeeccccccccCCCCcceEEE-EcCCCCeEeecc-----EEEEcCCCcceeeecc--CC-----Cce-EEEEecCCCE
Q 000177 1629 LEAKLSDTSVNLTGRGHAYSQIH-FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ--FT-----DHG-GGGFHPAGNE 1694 (1922)
Q Consensus 1629 ~i~tL~d~s~~~~~~gh~~~vVa-FSPdG~lLaSgg-----rLWDlrtgk~I~kf~g--h~-----~~V-sVaFSPdG~~ 1694 (1922)
..+.+. ||...+++ ++=+|-++++++ ++||++-..++.++.. |. ..+ +++..|.|+.
T Consensus 175 ~~~a~s---------ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl 245 (350)
T KOG0641|consen 175 GFHALS---------GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL 245 (350)
T ss_pred cceeec---------CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence 988886 77777633 444677888888 9999999888887743 22 234 7899999999
Q ss_pred EEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC---
Q 000177 1695 VIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI--- 1764 (1922)
Q Consensus 1695 LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~--- 1764 (1922)
|++|. -+||++.+++++.+..|.. .+|.|||...|+.+++.+.. +++-|-.
T Consensus 246 l~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-------------------ikltdlqgdl 306 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-------------------IKLTDLQGDL 306 (350)
T ss_pred eeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-------------------EEEeecccch
Confidence 99998 3999999999999998876 89999999999999864332 2222211
Q ss_pred --CCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1765 --NYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1765 --dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
....+..-+.+..+..+.|+|.+-.+. +...+.++.+|..
T Consensus 307 a~el~~~vv~ehkdk~i~~rwh~~d~sfi------sssadkt~tlwa~ 348 (350)
T KOG0641|consen 307 AHELPIMVVAEHKDKAIQCRWHPQDFSFI------SSSADKTATLWAL 348 (350)
T ss_pred hhcCceEEEEeccCceEEEEecCccceee------eccCcceEEEecc
Confidence 112223335577788899999875433 1334577888864
No 104
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.66 E-value=1.7e-15 Score=179.91 Aligned_cols=270 Identities=19% Similarity=0.268 Sum_probs=200.1
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---Cceeeecc--CCCCeeEEEeeecCCCcEEEEe-c
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS---SPLESCTS--HQAPVTLVQSHLSGETQLLLSS-S 1572 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg---k~l~tL~g--Hss~VtsLq~afSpDG~lLaSS-s 1572 (1922)
+.+++| .|. .-|.++.+|...++++||++ |.|||||+... .++..+.+ ....|.++ ...|||+.|++| .
T Consensus 411 rq~~tL-~HG-EvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSc--kL~pdgrtLivGGe 485 (705)
T KOG0639|consen 411 RQINTL-AHG-EVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSC--KLLPDGRTLIVGGE 485 (705)
T ss_pred Hhhhhh-ccC-cEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeee--EecCCCceEEeccc
Confidence 344444 577 77888999999999999986 67999999532 23444433 35678888 789999988885 4
Q ss_pred CCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc-
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY- 1647 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~- 1647 (1922)
-.++.|||+..........+.. +..++.+||.+..+++ ..||.|.|||+.+...+..|. ||..
T Consensus 486 astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsc---csdGnI~vwDLhnq~~Vrqfq---------GhtDG 553 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSC---CSDGNIAVWDLHNQTLVRQFQ---------GHTDG 553 (705)
T ss_pred cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeee---ccCCcEEEEEcccceeeeccc---------CCCCC
Confidence 7899999998743333333332 4778999999998888 789999999999999999886 6665
Q ss_pred -eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE---EEecCCCe-EEEEEcCCC
Q 000177 1648 -SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE---VWDLRKFR-LLRSVPSLD 1717 (1922)
Q Consensus 1648 -~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe---IWDLrTgk-lL~tl~gH~ 1717 (1922)
.++.++++|..|-++| +.||+++++.+...+...+.+++.++|++.+|+.|-+ +|=+.+.+ ....+.-|+
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlhe 633 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHE 633 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccc
Confidence 4599999999999999 9999999988877766666669999999999999973 77665533 334455566
Q ss_pred c--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEec
Q 000177 1718 Q--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1718 ~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~ 1795 (1922)
. -++.|.+.|+++++...++.-..| +.|+..+ |........|....++.++++|..-
T Consensus 634 ScVLSlKFa~cGkwfvStGkDnlLnaw--------rtPyGas-----------iFqskE~SsVlsCDIS~ddkyIVTG-- 692 (705)
T KOG0639|consen 634 SCVLSLKFAYCGKWFVSTGKDNLLNAW--------RTPYGAS-----------IFQSKESSSVLSCDISFDDKYIVTG-- 692 (705)
T ss_pred cEEEEEEecccCceeeecCchhhhhhc--------cCccccc-----------eeeccccCcceeeeeccCceEEEec--
Confidence 5 589999999999998665543333 3444433 2223334568888889999987743
Q ss_pred CCCCCccceEEEEEe
Q 000177 1796 DDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1796 dds~d~dSsVRLyEV 1810 (1922)
..+....+|+|
T Consensus 693 ----SGdkkATVYeV 703 (705)
T KOG0639|consen 693 ----SGDKKATVYEV 703 (705)
T ss_pred ----CCCcceEEEEE
Confidence 23345667776
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=1.1e-14 Score=166.30 Aligned_cols=252 Identities=13% Similarity=0.143 Sum_probs=178.2
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CCce-eeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCC
Q 000177 1510 ALLTCITFLG-DSSHIAVGSHTKELKIFDSNS-SSPL-ESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~t-gk~l-~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~ 1585 (1922)
+.|.+++||| ...+++.||.||+||+|+++. |... +....|.++|.++ +|+.||..++++ .|+.+++||+.+
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v--~WsddgskVf~g~~Dk~~k~wDL~S-- 103 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDV--CWSDDGSKVFSGGCDKQAKLWDLAS-- 103 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEE--EEccCCceEEeeccCCceEEEEccC--
Confidence 7899999999 566777999999999999976 4433 3446799999999 889999999885 599999999998
Q ss_pred CCcceEeccc----eeEEEcCCCC--EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1586 GGPMHSFEGC----KAARFSNSGN--LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1586 gk~l~tf~gh----~sVaFSPDG~--~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
++ +.++..| ..+.|-+... .|+|| +.|++|+.||++..+.+.++. -+..+.+.+--..++
T Consensus 104 ~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TG---SWDKTlKfWD~R~~~pv~t~~----------LPeRvYa~Dv~~pm~ 169 (347)
T KOG0647|consen 104 GQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTG---SWDKTLKFWDTRSSNPVATLQ----------LPERVYAADVLYPMA 169 (347)
T ss_pred CC-eeeeeecccceeEEEEecCCCcceeEec---ccccceeecccCCCCeeeeee----------ccceeeehhccCcee
Confidence 54 4445443 7888887654 78888 999999999999999888876 222222222222233
Q ss_pred e--ecc---EEEEcCCCcce-eeeccCCCc-e-EEEEecCCCEEEEEe-----EEEecCCC--eEEEEEcCCC-------
Q 000177 1660 L--WNG---ILWDRRNSVPV-HRFDQFTDH-G-GGGFHPAGNEVIINS-----EVWDLRKF--RLLRSVPSLD------- 1717 (1922)
Q Consensus 1660 a--Sgg---rLWDlrtgk~I-~kf~gh~~~-V-sVaFSPdG~~LASGS-----eIWDLrTg--klL~tl~gH~------- 1717 (1922)
+ ++. .+|+++.+... +.....-.+ + +++..++..-.+.|+ .|..+..+ +.-.+++.|.
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 3 333 78999866432 222222122 2 888888877778888 26666544 3334455554
Q ss_pred -c---eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEE
Q 000177 1718 -Q---TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGL 1792 (1922)
Q Consensus 1718 -~---~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAV 1792 (1922)
. ++|+|+|.-..|+++. .+..|.+||......+.+... ..+|...+++.+|.++|-
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaG-------------------sDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAG-------------------SDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred ceEEecceEeecccceEEEec-------------------CCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEE
Confidence 1 7899999877888763 345688888777766666444 667999999999998875
Q ss_pred Ee-cCCC
Q 000177 1793 IT-MDDQ 1798 (1922)
Q Consensus 1793 Ve-~dds 1798 (1922)
.- +|.+
T Consensus 311 A~gYDWS 317 (347)
T KOG0647|consen 311 ALGYDWS 317 (347)
T ss_pred Eeecccc
Confidence 43 4443
No 106
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.2e-15 Score=170.68 Aligned_cols=187 Identities=19% Similarity=0.316 Sum_probs=148.1
Q ss_pred ceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEE-ecCC
Q 000177 1498 FRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLS-SSSQ 1574 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaS-SsDg 1574 (1922)
-+|++.|+.|. ..|.+|.|++ ++..++++|.|++||+|+..-++.+.+|.||.+.|+.. .|+|. ..++++ |.|+
T Consensus 94 s~Pi~~~kEH~-~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a--~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 94 SKPIHKFKEHK-REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA--AFSPHIPNLFASASGDG 170 (311)
T ss_pred CcchhHHHhhh-hheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE--ecCCCCCCeEEEccCCc
Confidence 35899999999 9999999998 66788899999999999999999999999999999999 66774 456666 6799
Q ss_pred cEEEeccCCCCCCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCCcce
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
++++||++.. ++.+. +..| .++.|+. +.+.++|| +.|+.|++||++.-+ .+..+ .+++..+.
T Consensus 171 ~l~lwdvr~~-gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg---~vd~~vr~wDir~~r~pl~eL-------~gh~~AVR 238 (311)
T KOG0277|consen 171 TLRLWDVRSP-GKFMS-IEAHNSEILCCDWSKYNHNVLATG---GVDNLVRGWDIRNLRTPLFEL-------NGHGLAVR 238 (311)
T ss_pred eEEEEEecCC-CceeE-EEeccceeEeecccccCCcEEEec---CCCceEEEEehhhccccceee-------cCCceEEE
Confidence 9999999874 54443 5544 7899998 55677777 899999999999744 22222 23444455
Q ss_pred EEEEcCCC-CeEeecc-----EEEEcCCC-cceeeeccCCCce-EEEEecC-CCEEEEEe
Q 000177 1649 QIHFSPSD-TMLLWNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPA-GNEVIINS 1699 (1922)
Q Consensus 1649 vVaFSPdG-~lLaSgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPd-G~~LASGS 1699 (1922)
.++|||.. .+|++++ +|||...+ .++.+++.|+..+ .+.|++. +.++|+.+
T Consensus 239 kvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 239 KVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred EEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 59999987 4566777 99999855 4777888888877 7888874 56888887
No 107
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=7.7e-15 Score=167.65 Aligned_cols=227 Identities=20% Similarity=0.266 Sum_probs=174.0
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
.|.+.+|++-++|.+|. -+|+|++||+||++|+|+|.|..|++||+..|.+++.+. ..++|+..+|....+++.+++-
T Consensus 49 I~D~~T~~iar~lsaH~-~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~ 126 (405)
T KOG1273|consen 49 IYDFDTFRIARMLSAHV-RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATI 126 (405)
T ss_pred EEEccccchhhhhhccc-cceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEE
Confidence 44567889999999999 999999999999999999999999999999999988776 4689999965544566677664
Q ss_pred cCCcEEEeccCCCCCCcceEecc----------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEG----------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~g----------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
-+..-.+-++.. +++++-. ..+..|.+.|++|++| ...|.+.+||..|-+++..+.-+.
T Consensus 127 ~~~sp~vi~~s~----~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG---tsKGkllv~~a~t~e~vas~rits---- 195 (405)
T KOG1273|consen 127 MEESPVVIDFSD----PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG---TSKGKLLVYDAETLECVASFRITS---- 195 (405)
T ss_pred ecCCcEEEEecC----CceeeccCCCccccccccccccccCCCCEEEEe---cCcceEEEEecchheeeeeeeech----
Confidence 444444455543 2222211 1345699999999999 888999999999999998886111
Q ss_pred CCCCcceEEEEcCCCCeEeecc-----EEEEcCC-------C--cceeeeccCC---CceEEEEecCCCEEEEEe-----
Q 000177 1642 GRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN-------S--VPVHRFDQFT---DHGGGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt-------g--k~I~kf~gh~---~~VsVaFSPdG~~LASGS----- 1699 (1922)
...+..+.|+..|+.++... +.|+++. + .+.++++..- .+-+++|+.+|.|++.++
T Consensus 196 --~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHa 273 (405)
T KOG1273|consen 196 --VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHA 273 (405)
T ss_pred --heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecccccee
Confidence 12233488999999988666 7788762 1 2446665433 344899999999999998
Q ss_pred -EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEEE
Q 000177 1700 -EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1700 -eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaSg 1733 (1922)
-||....|.+++.+.|... -.|.|+|--..|++.
T Consensus 274 LYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 274 LYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred EEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 2999999999999998875 588899988777765
No 108
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.62 E-value=3.7e-15 Score=177.01 Aligned_cols=213 Identities=13% Similarity=0.150 Sum_probs=173.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc--eeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP--LESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~--l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~g 1586 (1922)
..|.+|.++|||+.|++|+.-.++.|||+..... ...+....-..+.+ +.+||.++.++ ++||.|.|||+.. .
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyAL--a~spDakvcFsccsdGnI~vwDLhn--q 541 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL--AISPDAKVCFSCCSDGNIAVWDLHN--Q 541 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhh--hcCCccceeeeeccCCcEEEEEccc--c
Confidence 6799999999999999999999999999976543 23344444556677 88999998888 5799999999998 7
Q ss_pred CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1587 GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1587 k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
..++.|+|| .|+.++++|..|.+| +-|++|+.||++++..+.... ....+..+.++|++.+|+.+
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTG---GlDntvRcWDlregrqlqqhd--------F~SQIfSLg~cP~~dWlavG 610 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTG---GLDNTVRCWDLREGRQLQQHD--------FSSQIFSLGYCPTGDWLAVG 610 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecC---CCccceeehhhhhhhhhhhhh--------hhhhheecccCCCccceeee
Confidence 788999987 789999999999999 899999999999988765432 12345568889999999976
Q ss_pred c---EEEEcCCCc-ceeeeccCCCce-EEEEecCCCEEEEEeE-----EEecCCCeEEEEEcCCCc-eeEEEccCCCEEE
Q 000177 1663 G---ILWDRRNSV-PVHRFDQFTDHG-GGGFHPAGNEVIINSE-----VWDLRKFRLLRSVPSLDQ-TTITFNARGDVIY 1731 (1922)
Q Consensus 1663 g---rLWDlrtgk-~I~kf~gh~~~V-sVaFSPdG~~LASGSe-----IWDLrTgklL~tl~gH~~-~sVaFSPdG~~La 1731 (1922)
- .+|=+.+.+ ..+.+..|...| ++.|.+.|+++++.++ .|.+--|..+...+.... .++.+|-|.++|+
T Consensus 611 Mens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 611 MENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIV 690 (705)
T ss_pred cccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEE
Confidence 5 788777554 456667778888 9999999999999994 888877877776665444 7888999999999
Q ss_pred EEEccC
Q 000177 1732 AILRRN 1737 (1922)
Q Consensus 1732 Sgs~~d 1737 (1922)
+++.+.
T Consensus 691 TGSGdk 696 (705)
T KOG0639|consen 691 TGSGDK 696 (705)
T ss_pred ecCCCc
Confidence 996544
No 109
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=4.6e-15 Score=181.25 Aligned_cols=185 Identities=16% Similarity=0.264 Sum_probs=160.9
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--CceeeeccCCCCeeEEEeee-cCCCcEEEEec-CCcE
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS--SPLESCTSHQAPVTLVQSHL-SGETQLLLSSS-SQDV 1576 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg--k~l~tL~gHss~VtsLq~af-SpDG~lLaSSs-DgtV 1576 (1922)
+..++.|. +.|+.+....+|+.|+++|.|.+|++|+...+ -++.++..|...|.|| ++ .++..++++|+ |+.|
T Consensus 66 ~asme~Hs-DWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl--a~~ak~~~lvaSgGLD~~I 142 (735)
T KOG0308|consen 66 IASMEHHS-DWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL--AYIAKNNELVASGGLDRKI 142 (735)
T ss_pred hhhhhhhH-hHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheee--eecccCceeEEecCCCccE
Confidence 56678899 99999999999999999999999999999887 5788899999999999 66 66777888865 9999
Q ss_pred EEeccCCCCCCcceEec---------c----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1577 HLWNASSIAGGPMHSFE---------G----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~---------g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
.|||+++...+.+.++. | +++++.+++|..|++| +..+.+++||.++++.+..+.
T Consensus 143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG---gtek~lr~wDprt~~kimkLr--------- 210 (735)
T KOG0308|consen 143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG---GTEKDLRLWDPRTCKKIMKLR--------- 210 (735)
T ss_pred EEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec---CcccceEEeccccccceeeee---------
Confidence 99999973223444443 2 3778889999889988 778999999999999998886
Q ss_pred CCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE
Q 000177 1644 GHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE 1700 (1922)
Q Consensus 1644 gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe 1700 (1922)
||..++ +-.++||..+++++ ++||+...+++++|..|...+ ++..+|+=.++.+|++
T Consensus 211 GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 211 GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR 275 (735)
T ss_pred ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC
Confidence 888877 88999999999887 999999999999999999999 8888999999999994
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.61 E-value=5.1e-14 Score=167.56 Aligned_cols=254 Identities=14% Similarity=0.187 Sum_probs=195.4
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce----ee------------e--ccCCCCeeEEEeeecC
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL----ES------------C--TSHQAPVTLVQSHLSG 1563 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l----~t------------L--~gHss~VtsLq~afSp 1563 (1922)
+.+..|. -+|+||+++||++++++++.||+|.-|++.+++.. .+ . ++|...|.++ +.|+
T Consensus 136 ~~~~~H~-~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~--avS~ 212 (479)
T KOG0299|consen 136 RVIGKHQ-LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL--AVSS 212 (479)
T ss_pred eeecccc-CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE--EEcC
Confidence 4456788 89999999999999999999999999999887633 11 1 2788889999 8999
Q ss_pred CCcEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1564 ETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1564 DG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
||+||++|. |..|.||+.++ .+.++.|++| .+++|-.....++++ +.|++|++|++.....+.++.
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t--~ehv~~~~ghr~~V~~L~fr~gt~~lys~---s~Drsvkvw~~~~~s~vetly---- 283 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDT--LEHVKVFKGHRGAVSSLAFRKGTSELYSA---SADRSVKVWSIDQLSYVETLY---- 283 (479)
T ss_pred CCcEEEecCCCceEEEecCcc--cchhhcccccccceeeeeeecCccceeee---ecCCceEEEehhHhHHHHHHh----
Confidence 999999975 99999999999 8888999987 567887777778888 889999999999887777775
Q ss_pred cccCCCCcceEEEEcC--CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecC
Q 000177 1639 NLTGRGHAYSQIHFSP--SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLR 1705 (1922)
Q Consensus 1639 ~~~~~gh~~~vVaFSP--dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLr 1705 (1922)
||+..++.++. -++.+-.++ ++|++..- .--.|.++...+ |++|-. ..++++|| -+|++.
T Consensus 284 -----GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 284 -----GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred -----CCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeec
Confidence 88888866554 344554554 99999543 333577888788 777765 46678888 399999
Q ss_pred CCeEEEEEc-CCC-------------ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC----Cc
Q 000177 1706 KFRLLRSVP-SLD-------------QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN----YS 1767 (1922)
Q Consensus 1706 TgklL~tl~-gH~-------------~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d----ys 1767 (1922)
+.+++.+.+ .|. .++++..|..+++++++ ...+++.|...+ ..
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-------------------~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-------------------WSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-------------------CCCceEEEEecCCccccc
Confidence 998888765 221 25788888888888874 234455554333 34
Q ss_pred eeeeeccCCceEEEEEcCCCceEEEE
Q 000177 1768 DIATIPVDRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1768 ~IaTidvkr~I~dLa~SPdds~LAVV 1793 (1922)
++..+....-|+.++|+++|.+|.+.
T Consensus 418 ~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 418 LLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred eeeecccccEEEEEEEccCCCEEEEe
Confidence 56666777889999999999966554
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.61 E-value=5.8e-14 Score=172.90 Aligned_cols=270 Identities=14% Similarity=0.221 Sum_probs=201.6
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--eeeccCCCCeeE-EEeeecCCCcEEEEecCC
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL--ESCTSHQAPVTL-VQSHLSGETQLLLSSSSQ 1574 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l--~tL~gHss~Vts-Lq~afSpDG~lLaSSsDg 1574 (1922)
++..+++.+|. ..|..|++.+ +.+++++|.||++++|+-..++.+ ..+.+|.+.|.. +++.-+..+++++.+.|.
T Consensus 4 Y~ls~~l~gH~-~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHK-SDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCc-cchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 45678899999 8898888765 458999999999999997655544 356788888877 743223345566667799
Q ss_pred cEEEeccCCCCCCcceEeccc--eeEEEc--CCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE-
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC--KAARFS--NSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ- 1649 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh--~sVaFS--PDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v- 1649 (1922)
+|.+|.... ..|+.++.+| +-++.+ .++. +++| +.|.++++|-+. ++...+. +|+..+
T Consensus 82 ~i~v~~~~~--~~P~~~LkgH~snVC~ls~~~~~~-~iSg---SWD~TakvW~~~--~l~~~l~---------gH~asVW 144 (745)
T KOG0301|consen 82 TIIVFKLSQ--AEPLYTLKGHKSNVCSLSIGEDGT-LISG---SWDSTAKVWRIG--ELVYSLQ---------GHTASVW 144 (745)
T ss_pred eEEEEecCC--CCchhhhhccccceeeeecCCcCc-eEec---ccccceEEecch--hhhcccC---------Ccchhee
Confidence 999999988 8899999998 223343 4455 8898 999999999764 4444443 666555
Q ss_pred -EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCCCeEEEEEcCCCc
Q 000177 1650 -IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1650 -VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH~~ 1718 (1922)
+.+-|.+ .++|++ ++|.- ++.+++|.+|++.| .+++-|++.++-++. ++|++ ++.++.++.+|..
T Consensus 145 Av~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn 220 (745)
T KOG0301|consen 145 AVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN 220 (745)
T ss_pred eeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccce
Confidence 7778888 666776 89975 78999999999999 899998876654444 69999 7999999999998
Q ss_pred --eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC-ceEEEEEcCCCceEEEEec
Q 000177 1719 --TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR-CVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr-~I~dLa~SPdds~LAVVe~ 1795 (1922)
.+++..+++..|+++..+ .++++|+.. .....+.... .||++.+-++|..+.
T Consensus 221 ~vYsis~~~~~~~Ivs~gED-------------------rtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvv---- 275 (745)
T KOG0301|consen 221 FVYSISMALSDGLIVSTGED-------------------RTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVV---- 275 (745)
T ss_pred EEEEEEecCCCCeEEEecCC-------------------ceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEE----
Confidence 788866777777776322 345666554 5566666655 799999888887533
Q ss_pred CCCCCccceEEEEEecCCCCCCC
Q 000177 1796 DDQEDMFSSARIYEIGRRRPTED 1818 (1922)
Q Consensus 1796 dds~d~dSsVRLyEVGr~r~~ED 1818 (1922)
...|+.||||.+.+.|-+++
T Consensus 276 ---g~SDG~VrVfT~~k~R~As~ 295 (745)
T KOG0301|consen 276 ---GGSDGRVRVFTVDKDRKASD 295 (745)
T ss_pred ---eccCceEEEEEecccccCCH
Confidence 22458999999887776543
No 112
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.61 E-value=2e-14 Score=176.77 Aligned_cols=286 Identities=15% Similarity=0.211 Sum_probs=192.9
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCC---------------------cee------
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDS---SHIAVGSHTKELKIFDSNSSS---------------------PLE------ 1545 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG---~lLASGS~DGtIkIWDl~tgk---------------------~l~------ 1545 (1922)
..|+.+..++||. +.|.+++|..-+ -+|+|||.|..||||.+.-+. ...
T Consensus 179 d~f~~v~el~GH~-DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~i 257 (764)
T KOG1063|consen 179 DSFARVAELEGHT-DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRI 257 (764)
T ss_pred cceeEEEEeeccc-hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEE
Confidence 3678899999999 999999999744 389999999999999873221 111
Q ss_pred ----eeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEe-----c----cceeEEEcCCCCEEEEee
Q 000177 1546 ----SCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSF-----E----GCKAARFSNSGNLFAALP 1611 (1922)
Q Consensus 1546 ----tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf-----~----gh~sVaFSPDG~~LaSgS 1611 (1922)
.+.||.+-|+++ .|+|.+..|++ |.|.++.+|.-.+..|--+... . |.+.+.|+|+++.|++-
T Consensus 258 s~eall~GHeDWV~sv--~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~- 334 (764)
T KOG1063|consen 258 SFEALLMGHEDWVYSV--WWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH- 334 (764)
T ss_pred ehhhhhcCcccceEEE--EEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe-
Confidence 124999999999 78999954544 7799999998876323222221 1 23778999999999887
Q ss_pred cCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEeecc--------------------------
Q 000177 1612 TETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-------------------------- 1663 (1922)
Q Consensus 1612 ~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-------------------------- 1663 (1922)
+..|..++|-........... ...||...+ ++|+|.|++|++.|
T Consensus 335 --g~~Gg~hlWkt~d~~~w~~~~------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH 406 (764)
T KOG1063|consen 335 --GRTGGFHLWKTKDKTFWTQEP------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH 406 (764)
T ss_pred --cccCcEEEEeccCccceeecc------ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccc
Confidence 777889999833211111110 012454444 66666666666555
Q ss_pred -------------------------EEEEcC-------------------------------------------CCc---
Q 000177 1664 -------------------------ILWDRR-------------------------------------------NSV--- 1672 (1922)
Q Consensus 1664 -------------------------rLWDlr-------------------------------------------tgk--- 1672 (1922)
++|+.. +|.
T Consensus 407 GyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~ 486 (764)
T KOG1063|consen 407 GYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA 486 (764)
T ss_pred cccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence 111111 000
Q ss_pred ------------------------------ceeeeccCCCce-EEEEecCCCEEEEEeE----------EEecCCCeEEE
Q 000177 1673 ------------------------------PVHRFDQFTDHG-GGGFHPAGNEVIINSE----------VWDLRKFRLLR 1711 (1922)
Q Consensus 1673 ------------------------------~I~kf~gh~~~V-sVaFSPdG~~LASGSe----------IWDLrTgklL~ 1711 (1922)
.++++.||...+ +++.+|+|+++|++++ +|+..+...++
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~ 566 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ 566 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh
Confidence 012334555556 8899999999999983 99999999888
Q ss_pred EEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCce
Q 000177 1712 SVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSF 1789 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~ 1789 (1922)
.+.+|.- +.++|||||++|++++++....++... -. ....| .|.. .-...|-|++..|+|++.+
T Consensus 567 ~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~----~~--~~~e~------~fa~--~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 567 ELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ----ED--IKDEF------RFAC--LKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred eecccceEEEEEEECCCCcEEEEeecCceEEeeeee----cc--cchhh------hhcc--ccccceEEEEcccCcccce
Confidence 9999876 899999999999999876654443210 00 00001 1111 1223566999999999999
Q ss_pred EEEEecCCCCCccceEEEEEecCC
Q 000177 1790 VGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1790 LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
++.. ..|..|++|+....
T Consensus 633 FaTa------SRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 633 FATA------SRDKKVKVWEEPDL 650 (764)
T ss_pred eEEe------cCCceEEEEeccCc
Confidence 8854 35688999986443
No 113
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.9e-14 Score=171.75 Aligned_cols=286 Identities=14% Similarity=0.217 Sum_probs=195.2
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEecc
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNA 1581 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl 1581 (1922)
..++||+ +.|.|+...|.|.+|++|+.||+|+||.+.+|.|++++.- .+.|.||.|...++-.+|+.+....+.|-+.
T Consensus 394 lvyrGHt-g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHT-GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeEeccC-CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 4578999 9999999999999999999999999999999999998863 4689999443333444555543333443332
Q ss_pred CCC---------------------------------C----CC--cceEeccceeEEEcCCCCEEEEeecCCCCCeEEEE
Q 000177 1582 SSI---------------------------------A----GG--PMHSFEGCKAARFSNSGNLFAALPTETSDRGILLY 1622 (1922)
Q Consensus 1582 ~t~---------------------------------~----gk--~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIW 1622 (1922)
.-+ . +. .+..++.++.+.||..|+||++...++....|.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 110 0 00 01112224789999999999999777788899999
Q ss_pred ECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEE
Q 000177 1623 DIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1623 DlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LAS 1697 (1922)
++...+...-|. ........+.|+|.-.+++.++ ++||+..+..++++.....++ +++.||+|..|+.
T Consensus 552 QLSK~~sQ~PF~-------kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 552 QLSKRKSQSPFR-------KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred ecccccccCchh-------hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 998766544442 0122334499999999888777 999999988888888888888 8999999999999
Q ss_pred Ee---E-EE-ecCC-CeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhh-hhcccccccCCcceEEEEecCCCce
Q 000177 1698 NS---E-VW-DLRK-FRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMS-AVHTRRVKHPLFAAFRTVDAINYSD 1768 (1922)
Q Consensus 1698 GS---e-IW-DLrT-gklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s-~lh~rr~ksp~~ssFrt~Da~dys~ 1768 (1922)
|+ + +| |+.- .++.+++.-|.. ++|+|++.-..+++++.+....++. .+-+.-++.|+.-.++.+.+.
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH---- 700 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH---- 700 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc----
Confidence 99 2 45 6653 467777877776 8999999999999986433221110 000011112211111111110
Q ss_pred eeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1769 IATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1769 IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
...-.-.|.+..|+|...++-.. ..++.+|+|
T Consensus 701 --~~~~~~gVLd~~wHP~qpWLfsA------GAd~tirlf 732 (733)
T KOG0650|consen 701 --EKTNDLGVLDTIWHPRQPWLFSA------GADGTIRLF 732 (733)
T ss_pred --eeecccceEeecccCCCceEEec------CCCceEEee
Confidence 00012358999999999987744 345788887
No 114
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=9e-14 Score=175.45 Aligned_cols=215 Identities=14% Similarity=0.225 Sum_probs=165.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCC
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIA 1585 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~ 1585 (1922)
|. ..|.+++.. +.+|++|+.+++|.+|...+++.-..+.-.+-+++++ +|+.+|++++.| +|-.|++-++.+
T Consensus 55 ~g-~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~--~v~g~g~~iaagsdD~~vK~~~~~D-- 127 (933)
T KOG1274|consen 55 SG-ELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDL--AVSGSGKMIAAGSDDTAVKLLNLDD-- 127 (933)
T ss_pred cC-ceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEE--EEecCCcEEEeecCceeEEEEeccc--
Confidence 55 677887765 5599999999999999999887765565567889999 889999999995 588999999987
Q ss_pred CCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC-CCcceEEEEcCCCCeEe
Q 000177 1586 GGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR-GHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1586 gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~-gh~~~vVaFSPdG~lLa 1660 (1922)
......+.+| .++.|+|.+++|++. +.||.|+|||+.++.+..++......+... ......++|+|+|..++
T Consensus 128 ~s~~~~lrgh~apVl~l~~~p~~~fLAvs---s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 128 SSQEKVLRGHDAPVLQLSYDPKGNFLAVS---SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred cchheeecccCCceeeeeEcCCCCEEEEE---ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence 6667778776 789999999999998 889999999999999988886433222222 22233499999965555
Q ss_pred ecc-----EEEEcCCCcceeeecc--CCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCceeEEEccCC
Q 000177 1661 WNG-----ILWDRRNSVPVHRFDQ--FTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQTTITFNARG 1727 (1922)
Q Consensus 1661 Sgg-----rLWDlrtgk~I~kf~g--h~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~~sVaFSPdG 1727 (1922)
..+ ++|+...+....++.. +...+ .+.|+|+|+|||+++ -|||+.+... .......++++|.|++
T Consensus 205 ~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 205 VPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--HEFKRAVCCEAWKPNA 282 (933)
T ss_pred eeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh--ccccceeEEEecCCCC
Confidence 333 8999988887777643 22324 899999999999999 3999997221 2222334899999998
Q ss_pred CEEEEE
Q 000177 1728 DVIYAI 1733 (1922)
Q Consensus 1728 ~~LaSg 1733 (1922)
+.|-..
T Consensus 283 n~it~~ 288 (933)
T KOG1274|consen 283 NAITLI 288 (933)
T ss_pred CeeEEE
Confidence 876544
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.60 E-value=4.6e-14 Score=168.00 Aligned_cols=221 Identities=15% Similarity=0.250 Sum_probs=164.5
Q ss_pred ceeeEEe-cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC-cEEEEecCCc
Q 000177 1498 FRPWRTC-RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET-QLLLSSSSQD 1575 (1922)
Q Consensus 1498 frpirtL-rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG-~lLaSSsDgt 1575 (1922)
+.+.+.- ++|. ..|.+++.|+||+||++|+.|..|.||+.++.+.++.|.+|.+.|.++ +|-... +++.+|.|++
T Consensus 191 ~~~~k~~r~~h~-keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L--~fr~gt~~lys~s~Drs 267 (479)
T KOG0299|consen 191 GNPLKESRKGHV-KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSL--AFRKGTSELYSASADRS 267 (479)
T ss_pred cCCCCccccccc-ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeee--eeecCccceeeeecCCc
Confidence 3344333 4899 999999999999999999999999999999999999999999999999 555444 4555577999
Q ss_pred EEEeccCCCCCCcceEeccceeEEEcC----CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFEGCKAARFSN----SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh~sVaFSP----DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
|++|+++. ...+.++-+|....+.- -++.+-+| +.|+++++|++.....+ .+. +.+....+++
T Consensus 268 vkvw~~~~--~s~vetlyGHqd~v~~IdaL~reR~vtVG---grDrT~rlwKi~eesql-ifr-------g~~~sidcv~ 334 (479)
T KOG0299|consen 268 VKVWSIDQ--LSYVETLYGHQDGVLGIDALSRERCVTVG---GRDRTVRLWKIPEESQL-IFR-------GGEGSIDCVA 334 (479)
T ss_pred eEEEehhH--hHHHHHHhCCccceeeechhcccceEEec---cccceeEEEecccccee-eee-------CCCCCeeeEE
Confidence 99999987 56677777875544433 24444444 79999999999543222 222 1223344577
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcceeeeccC------------CCce-EEEEecCCCEEEEEe-----EEEecCCC-
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF------------TDHG-GGGFHPAGNEVIINS-----EVWDLRKF- 1707 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh------------~~~V-sVaFSPdG~~LASGS-----eIWDLrTg- 1707 (1922)
|-.+. .+++++ .||++.+.+++.++... +.|+ +++..|....+++|+ ++|-+..+
T Consensus 335 ~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 335 FINDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred Eeccc-ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 76554 555665 89999999998877421 1167 889999999999999 79988765
Q ss_pred ---eEEEEEcCCC-ceeEEEccCCCEEEEEEc
Q 000177 1708 ---RLLRSVPSLD-QTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1708 ---klL~tl~gH~-~~sVaFSPdG~~LaSgs~ 1735 (1922)
.++..++-.. .++++|+++|+.|+++..
T Consensus 414 r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 414 RAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred cccceeeecccccEEEEEEEccCCCEEEEecc
Confidence 5566665222 289999999998888843
No 116
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.59 E-value=1.1e-13 Score=158.15 Aligned_cols=222 Identities=16% Similarity=0.213 Sum_probs=162.4
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
+....|. ++|.+++|+.||..+++|+.|+.+++||+.+++ ...+..|..+|..+.|.-.+.-.+|+|| .|.+|+.||
T Consensus 66 ka~~~~~-~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 66 KAQQSHD-GPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred hhhhccC-CCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 4455688 999999999999999999999999999999994 5678889999999955333344588886 499999999
Q ss_pred cCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1581 ASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
++. ..++.++.-- ++-+..--..+++.+ ..++.|.+|+++.+....... . ....+...+++..++....
T Consensus 144 ~R~--~~pv~t~~LPeRvYa~Dv~~pm~vVa---ta~r~i~vynL~n~~te~k~~--~---SpLk~Q~R~va~f~d~~~~ 213 (347)
T KOG0647|consen 144 TRS--SNPVATLQLPERVYAADVLYPMAVVA---TAERHIAVYNLENPPTEFKRI--E---SPLKWQTRCVACFQDKDGF 213 (347)
T ss_pred cCC--CCeeeeeeccceeeehhccCceeEEE---ecCCcEEEEEcCCCcchhhhh--c---CcccceeeEEEEEecCCce
Confidence 998 7777776542 322222233456666 678899999998765433221 0 0124666677777777766
Q ss_pred eecc-----EEEEcCCC--cceeeeccCCC---------ce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC
Q 000177 1660 LWNG-----ILWDRRNS--VPVHRFDQFTD---------HG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD 1717 (1922)
Q Consensus 1660 aSgg-----rLWDlrtg--k~I~kf~gh~~---------~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~ 1717 (1922)
+.++ -+..+..+ +.-.+|+-|.. .| +++|||.-..|++.+ .+||-.....+++.+.|.
T Consensus 214 alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~ 293 (347)
T KOG0647|consen 214 ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP 293 (347)
T ss_pred EeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC
Confidence 7666 45555554 33334544432 12 789999988888876 499999888888888787
Q ss_pred c--eeEEEccCCCEEEEEEc
Q 000177 1718 Q--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1718 ~--~sVaFSPdG~~LaSgs~ 1735 (1922)
+ ++..||.+|.+++-+..
T Consensus 294 qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 294 QPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred CccceeEecCCCCEEEEEee
Confidence 7 89999999999887644
No 117
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.1e-13 Score=160.58 Aligned_cols=118 Identities=12% Similarity=0.196 Sum_probs=98.0
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC------CCCceeee-ccCCCCeeEEEeeecCCCcEEEEec-CC
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN------SSSPLESC-TSHQAPVTLVQSHLSGETQLLLSSS-SQ 1574 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~------tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSSs-Dg 1574 (1922)
.+.+|. ++|+++.||.++++|++|+.|..+++|+++ +.+++... ..|.+.|+|+ .|...+++|.+|. ++
T Consensus 51 D~~~H~-GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L--~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 51 DVREHT-GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSL--EFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhc-cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEE--EEccCCeeEecCCCcc
Confidence 467899 999999999999999999999999999985 33555544 3456899999 8888888999965 99
Q ss_pred cEEEeccCCCCCCcceEecc------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1575 DVHLWNASSIAGGPMHSFEG------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~g------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
+|.+.|+.+ .+.+..+.. +..+..+|..+.|++. +.++.|.+||++..+
T Consensus 128 ~VI~HDiEt--~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~---t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 128 TVIKHDIET--KQSIYVANENNNRGDVYHMDQHPTDNTLIVV---TRAKLVSFIDNRDRQ 182 (609)
T ss_pred eeEeeeccc--ceeeeeecccCcccceeecccCCCCceEEEE---ecCceEEEEeccCCC
Confidence 999999998 566665542 4678889988888888 889999999998654
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.57 E-value=6.7e-14 Score=166.81 Aligned_cols=218 Identities=18% Similarity=0.346 Sum_probs=162.9
Q ss_pred CCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC----------CceeeeccCCCCeeEEEeeecCCCcEEEEecCC
Q 000177 1506 DDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSS----------SPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQ 1574 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tg----------k~l~tL~gHss~VtsLq~afSpDG~lLaSSsDg 1574 (1922)
-|. +.|+.+.+-| +..+|++++..+.|.|||..+. .+-.++.||...-++|.|.....|.+|.++.|+
T Consensus 122 ~h~-gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHD-GEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred cCC-ccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 488 9999999999 5568889999999999998542 122378999998889955444456666668899
Q ss_pred cEEEeccCCCCC-----CcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCC--ceeeeeccccccccC
Q 000177 1575 DVHLWNASSIAG-----GPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTY--QLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1575 tVkLWDl~t~~g-----k~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTg--k~i~tL~d~s~~~~~ 1642 (1922)
+|++||+..... .+...|.+| ..++|++ +...|+++ +.|+.+.|||+|++ ++.... ..
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv---~dd~~L~iwD~R~~~~~~~~~~-------~a 270 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV---GDDGKLMIWDTRSNTSKPSHSV-------KA 270 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee---cCCCeEEEEEcCCCCCCCcccc-------cc
Confidence 999999976322 234556665 6789999 45778888 89999999999963 222222 22
Q ss_pred CCCcceEEEEcCCCCeEe-ecc-----EEEEcCCC-cceeeeccCCCce-EEEEecCCC-EEEEEe-----EEEecCCC-
Q 000177 1643 RGHAYSQIHFSPSDTMLL-WNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAGN-EVIINS-----EVWDLRKF- 1707 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLa-Sgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG~-~LASGS-----eIWDLrTg- 1707 (1922)
+....++++|+|-+.+++ +++ .|||+|+- +++++|.+|...| .|.|+|+.. .|++++ .|||+..-
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 344566699999776555 555 89999975 5899999999999 999999865 555555 49999642
Q ss_pred -------------eEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1708 -------------RLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1708 -------------klL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
+++..-.||.. +.+.|+|+..+++++.
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv 392 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV 392 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEe
Confidence 23455567776 7999999999887663
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.6e-14 Score=159.38 Aligned_cols=222 Identities=16% Similarity=0.221 Sum_probs=166.3
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---CceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEec
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS---SPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWN 1580 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg---k~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWD 1580 (1922)
..|. +.|..+...--|++|+|++.|++||||.+..+ +.+.++.||.+||+.+.|+.-.-|.+|++|+ |+.|.||.
T Consensus 8 t~H~-D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHE-DMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhh-hhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 4688 88888888888999999999999999999765 4577899999999999776555799999976 99999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCc--eeeeeccccccccCCCCcceEEEE
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNS--GNLFAALPTETSDRGILLYDIQTYQ--LEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk--~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
-..+.....+.+..| ++++|.|. |-.|+++ +.||.|.|.+.++.. ....+. ..|...++.++|
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~Laca---sSDG~vsvl~~~~~g~w~t~ki~------~aH~~GvnsVsw 157 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACA---SSDGKVSVLTYDSSGGWTTSKIV------FAHEIGVNSVSW 157 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEe---eCCCcEEEEEEcCCCCccchhhh------hccccccceeee
Confidence 887322233444443 89999996 5677777 899999999987641 111111 112233445999
Q ss_pred cCC---C-----------CeEeecc-----EEEEcCCCc--ceeeeccCCCce-EEEEecCC----CEEEEEeE-----E
Q 000177 1653 SPS---D-----------TMLLWNG-----ILWDRRNSV--PVHRFDQFTDHG-GGGFHPAG----NEVIINSE-----V 1701 (1922)
Q Consensus 1653 SPd---G-----------~lLaSgg-----rLWDlrtgk--~I~kf~gh~~~V-sVaFSPdG----~~LASGSe-----I 1701 (1922)
.|- | +.|+++| +||+..++. .-++|.+|.+++ .++|.|.- .+|+++|. |
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 886 4 5588888 999998864 456699999999 99999974 47899983 8
Q ss_pred EecCC------CeEEEEEcCCCceeEEEccCCCEEEEEEccC
Q 000177 1702 WDLRK------FRLLRSVPSLDQTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1702 WDLrT------gklL~tl~gH~~~sVaFSPdG~~LaSgs~~d 1737 (1922)
|-.+. .++++.++ ...+.+.||+.|++|+.+..++
T Consensus 238 wt~~~e~e~wk~tll~~f~-~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEEFP-DVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred EEecCccCcccccccccCC-cceEEEEEeccccEEEEecCCc
Confidence 87652 23344433 1238999999999999886555
No 120
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.56 E-value=7.7e-13 Score=165.58 Aligned_cols=271 Identities=18% Similarity=0.193 Sum_probs=207.7
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S 1571 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S 1571 (1922)
|.....+.+++|+++. +.|+++.=+|-=..++.|..+|+|.|+|+..++.+.+|+.-.+.|+++ +|..||..+.+ |
T Consensus 187 ~Nvrt~K~v~~f~~~~-s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vtsl--SFrtDG~p~las~ 263 (910)
T KOG1539|consen 187 WNVRTGKVVYTFQEFF-SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSL--SFRTDGNPLLASG 263 (910)
T ss_pred EEeccCcEEEEecccc-cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEE--EeccCCCeeEEec
Confidence 4467888999999999 999999999988899999999999999999999999998556999999 88989886665 4
Q ss_pred -cCCcEEEeccCCCCCCcceEec-----------------------------------------------cc----e---
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFE-----------------------------------------------GC----K--- 1596 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~-----------------------------------------------gh----~--- 1596 (1922)
..|.+.+||++. .+.+.... || .
T Consensus 264 ~~~G~m~~wDLe~--kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ir 341 (910)
T KOG1539|consen 264 RSNGDMAFWDLEK--KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIR 341 (910)
T ss_pred cCCceEEEEEcCC--CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhee
Confidence 378999999875 11111000 00 1
Q ss_pred --------------------------------------------------------------------------------
Q 000177 1597 -------------------------------------------------------------------------------- 1596 (1922)
Q Consensus 1597 -------------------------------------------------------------------------------- 1596 (1922)
T Consensus 342 fy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~ 421 (910)
T KOG1539|consen 342 FYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGK 421 (910)
T ss_pred eeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCc
Confidence
Q ss_pred -------------------------------eEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1597 -------------------------------AARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1597 -------------------------------sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
+++.++.|++.+.| ...|+|-+|++++|-...++. ....|
T Consensus 422 ~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG---~S~G~Id~fNmQSGi~r~sf~------~~~ah 492 (910)
T KOG1539|consen 422 RSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG---YSKGTIDRFNMQSGIHRKSFG------DSPAH 492 (910)
T ss_pred ceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe---ccCCeEEEEEcccCeeecccc------cCccc
Confidence 12233333333333 334455555555554444442 01234
Q ss_pred cceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1646 AYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1646 ~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
...+ ++....++.+++++ ++||...+.+++++.-......+.+|.....++++. .++|+.|.+.++.+
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f 572 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF 572 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh
Confidence 4444 67777778899887 999999998888887666666888888777777666 48999999999999
Q ss_pred cCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEE
Q 000177 1714 PSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVG 1791 (1922)
Q Consensus 1714 ~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LA 1791 (1922)
.||.. +.++|||+|++|+++. +++.+++||.-+...|-.+-++.+...+.++|+|.++|
T Consensus 573 ~gh~nritd~~FS~DgrWlisas-------------------mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 573 WGHGNRITDMTFSPDGRWLISAS-------------------MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLA 633 (910)
T ss_pred hccccceeeeEeCCCCcEEEEee-------------------cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEE
Confidence 99988 8999999999999984 66789999999999999998999999999999999999
Q ss_pred EEecC
Q 000177 1792 LITMD 1796 (1922)
Q Consensus 1792 VVe~d 1796 (1922)
++..+
T Consensus 634 T~Hvd 638 (910)
T KOG1539|consen 634 TVHVD 638 (910)
T ss_pred EEEec
Confidence 98644
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.56 E-value=1.5e-13 Score=169.26 Aligned_cols=211 Identities=14% Similarity=0.249 Sum_probs=170.5
Q ss_pred ceeeEEecCCCCCCEEE-EEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCc
Q 000177 1498 FRPWRTCRDDAGALLTC-ITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQD 1575 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~-LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgt 1575 (1922)
+-....+.+|. +.|.+ ++|-+ ++-.|++|+.|++|.+|......++.++++|.+.|.++ +...++.+|.+|.|.+
T Consensus 47 ~l~~~~~~~~~-g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~l--s~~~~~~~iSgSWD~T 123 (745)
T KOG0301|consen 47 YLETHAFEGPK-GFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSL--SIGEDGTLISGSWDST 123 (745)
T ss_pred cccceecccCc-ceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeee--ecCCcCceEecccccc
Confidence 34456688888 88877 88886 45569999999999999999999999999999999999 6566777444467999
Q ss_pred EEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--
Q 000177 1576 VHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ-- 1649 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v-- 1649 (1922)
+++|-.. ++...+.+| +.+.+-|.+ .++|| +.|++|++|.- ++++++|. +|...+
T Consensus 124 akvW~~~----~l~~~l~gH~asVWAv~~l~e~-~~vTg---saDKtIklWk~--~~~l~tf~---------gHtD~VRg 184 (745)
T KOG0301|consen 124 AKVWRIG----ELVYSLQGHTASVWAVASLPEN-TYVTG---SADKTIKLWKG--GTLLKTFS---------GHTDCVRG 184 (745)
T ss_pred eEEecch----hhhcccCCcchheeeeeecCCC-cEEec---cCcceeeeccC--Cchhhhhc---------cchhheee
Confidence 9999885 467778887 666777776 78898 89999999986 67778786 787776
Q ss_pred EEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc--CCC
Q 000177 1650 IHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP--SLD 1717 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~--gH~ 1717 (1922)
+++-+++.++-++. ++|++ +|.++..+.+|++.+ ++...+++..|++++ +||+.. .+.+.+. +..
T Consensus 185 L~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtts 261 (745)
T KOG0301|consen 185 LAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTS 261 (745)
T ss_pred eEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccc
Confidence 88888776554333 99998 789999999999999 888777888888888 599987 5555554 444
Q ss_pred ceeEEEccCCCEEEEE
Q 000177 1718 QTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1718 ~~sVaFSPdG~~LaSg 1733 (1922)
.|++.+-++|+.++.+
T Consensus 262 iWsa~~L~NgDIvvg~ 277 (745)
T KOG0301|consen 262 IWSAKVLLNGDIVVGG 277 (745)
T ss_pred eEEEEEeeCCCEEEec
Confidence 5899999999888776
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=9.6e-14 Score=158.14 Aligned_cols=214 Identities=17% Similarity=0.250 Sum_probs=164.3
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC------CC----------------------------
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDS------NS---------------------------- 1540 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl------~t---------------------------- 1540 (1922)
....+.+.++.||. +.|+|++|++.+.+++|+|.|++.+||.. ..
T Consensus 177 ~Esg~CL~~Y~GH~-GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~ 255 (481)
T KOG0300|consen 177 LESGACLATYTGHT-GSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEK 255 (481)
T ss_pred eccccceeeecccc-cceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccc
Confidence 45566778889999 99999999999999999999999999972 11
Q ss_pred --C----CceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEE
Q 000177 1541 --S----SPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAA 1609 (1922)
Q Consensus 1541 --g----k~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaS 1609 (1922)
+ .++..|.+|...|.+. .|-..|+.+++ +.|.+..|||+++ +.++..+.|| +.++-||..+++++
T Consensus 256 sD~~tiRvPl~~ltgH~~vV~a~--dWL~gg~Q~vTaSWDRTAnlwDVEt--ge~v~~LtGHd~ELtHcstHptQrLVvT 331 (481)
T KOG0300|consen 256 SDGHTIRVPLMRLTGHRAVVSAC--DWLAGGQQMVTASWDRTANLWDVET--GEVVNILTGHDSELTHCSTHPTQRLVVT 331 (481)
T ss_pred cCCceeeeeeeeeeccccceEeh--hhhcCcceeeeeeccccceeeeecc--CceeccccCcchhccccccCCcceEEEE
Confidence 0 1244678999999998 66777888877 6699999999999 8999999997 67888999999999
Q ss_pred eecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCc-ceeeeccCC
Q 000177 1610 LPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSV-PVHRFDQFT 1681 (1922)
Q Consensus 1610 gS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk-~I~kf~gh~ 1681 (1922)
. +.|.+.++||++.. +.... .+.||...+ +.|..+++. ++++ ++||+++-+ ++.++....
T Consensus 332 s---SrDtTFRLWDFRea--I~sV~------VFQGHtdtVTS~vF~~dd~v-VSgSDDrTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 332 S---SRDTTFRLWDFREA--IQSVA------VFQGHTDTVTSVVFNTDDRV-VSGSDDRTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred e---ccCceeEeccchhh--cceee------eecccccceeEEEEecCCce-eecCCCceEEEeeeccccCcceeeecCC
Confidence 8 89999999999842 22221 224777665 778776654 4555 999999764 777776555
Q ss_pred CceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEc-----CCCc--eeEEEccC
Q 000177 1682 DHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP-----SLDQ--TTITFNAR 1726 (1922)
Q Consensus 1682 ~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~-----gH~~--~sVaFSPd 1726 (1922)
....++.+..++.|++-. ++||+. |..+..++ +|.. +|++|..+
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeecccc
Confidence 444778888888888876 599997 55555554 5554 68888643
No 123
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=6.2e-13 Score=152.76 Aligned_cols=250 Identities=14% Similarity=0.188 Sum_probs=175.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l 1589 (1922)
+.|+.+.|+|.++.|+.+++||++++||+........++ |..++.++ +|.++.+.+..+.||.|+++|+.+.....+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c--~F~d~~~~~~G~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDC--AFADESTIVTGGLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeee--eccCCceEEEeccCceEEEEEecCCcceee
Confidence 789999999999999999999999999998875555554 89999999 888776666667799999999997322222
Q ss_pred eEe-ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----
Q 000177 1590 HSF-EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----- 1663 (1922)
Q Consensus 1590 ~tf-~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----- 1663 (1922)
.+. .+++|+.+++-...+++| +.|++|++||.+......++. ....+.+.+-.|+.|+.++
T Consensus 91 gth~~~i~ci~~~~~~~~vIsg---sWD~~ik~wD~R~~~~~~~~d----------~~kkVy~~~v~g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISG---SWDKTIKFWDPRNKVVVGTFD----------QGKKVYCMDVSGNRLVVGTSDRKV 157 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEc---ccCccEEEEeccccccccccc----------cCceEEEEeccCCEEEEeecCceE
Confidence 222 235899999988889998 999999999999866555554 2235566666777777644
Q ss_pred EEEEcCCCccee-eec-cCCCce-EEEEecCCCEEEEEe-------EEEecCC--CeEEEEEcCCCc-----------ee
Q 000177 1664 ILWDRRNSVPVH-RFD-QFTDHG-GGGFHPAGNEVIINS-------EVWDLRK--FRLLRSVPSLDQ-----------TT 1720 (1922)
Q Consensus 1664 rLWDlrtgk~I~-kf~-gh~~~V-sVaFSPdG~~LASGS-------eIWDLrT--gklL~tl~gH~~-----------~s 1720 (1922)
.+||+|+-.... ... ...-.+ ++++-|++.=.+.+| +.+|... .+.-..++.|.. +.
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 899999765322 111 222334 899999887666666 3455541 112223343322 79
Q ss_pred EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEe
Q 000177 1721 ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe 1794 (1922)
++|+|--..+++|..+.. +..||..+.+.+..+.. +..|..++++.+|..+|+..
T Consensus 238 i~Fhp~~~tfaTgGsDG~-------------------V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGI-------------------VNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred eEeccccceEEecCCCce-------------------EEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 999999888999854432 23344444443333332 45689999999999999875
No 124
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.54 E-value=6.6e-13 Score=150.91 Aligned_cols=269 Identities=18% Similarity=0.212 Sum_probs=178.4
Q ss_pred cCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC------------ce---eeeccCCCCeeEEEeeecCCCcEE
Q 000177 1505 RDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSS------------PL---ESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk------------~l---~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
+.|. +.|+++...+ .|+++++|+.||.|.+||++.-. ++ ..-.+|...|.++.|.....|-+.
T Consensus 40 r~Hg-GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 40 RPHG-GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred ccCC-CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 5688 9999999998 78999999999999999996432 11 112578999999977544444443
Q ss_pred EEecCCcEEEeccCCCCCCcceEec--c-ceeEEEcCC---CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1569 LSSSSQDVHLWNASSIAGGPMHSFE--G-CKAARFSNS---GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1569 aSSsDgtVkLWDl~t~~gk~l~tf~--g-h~sVaFSPD---G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
.++-|.++||||.++ .+....|+ + +.+-+|+|- ...|++| ..|-.|++.|+.+|.+.+++.
T Consensus 119 ssSFDhtlKVWDtnT--lQ~a~~F~me~~VYshamSp~a~sHcLiA~g---tr~~~VrLCDi~SGs~sH~Ls-------- 185 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNT--LQEAVDFKMEGKVYSHAMSPMAMSHCLIAAG---TRDVQVRLCDIASGSFSHTLS-------- 185 (397)
T ss_pred cccccceEEEeeccc--ceeeEEeecCceeehhhcChhhhcceEEEEe---cCCCcEEEEeccCCcceeeec--------
Confidence 335599999999998 45444443 3 466678883 3456665 788999999999999999997
Q ss_pred CCCcceE--EEEcCCCCeEeecc------EEEEcCCC-cceeeeccCC--------------Cce-EEEEecCCCEEEEE
Q 000177 1643 RGHAYSQ--IHFSPSDTMLLWNG------ILWDRRNS-VPVHRFDQFT--------------DHG-GGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1643 ~gh~~~v--VaFSPdG~lLaSgg------rLWDlrtg-k~I~kf~gh~--------------~~V-sVaFSPdG~~LASG 1698 (1922)
||...+ +.|+|...+++..+ ++||+|.. -+...++.|+ +.+ +++|+.+|.++++.
T Consensus 186 -GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 186 -GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred -cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence 888777 89999999888444 99999964 3555554443 334 78999999999998
Q ss_pred e-----EEEecCCCeEE-EEEc--CCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCcee
Q 000177 1699 S-----EVWDLRKFRLL-RSVP--SLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDI 1769 (1922)
Q Consensus 1699 S-----eIWDLrTgklL-~tl~--gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~I 1769 (1922)
+ ++|+..+|+-. +.+. .|.+ ...+|. +-++ ....+ +-.|...++.++....|+.|
T Consensus 265 gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-----~~~~---~s~vf--------v~~p~~~~lall~~~sgs~i 328 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-----IQSM---DSDVF--------VLFPNDGSLALLNLLEGSFV 328 (397)
T ss_pred cCccceEEeecccCcccccccccccccccccceEE-----Eeec---ccceE--------EEEecCCeEEEEEccCceEE
Confidence 8 59999887532 1111 1222 233333 1111 00000 11234566677777777777
Q ss_pred eeeccCC-ceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1770 ATIPVDR-CVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1770 aTidvkr-~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
...+... +|...++-|+=..+ ...++++.+..|.+
T Consensus 329 r~l~~h~k~i~c~~~~~~fq~~------~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 329 RRLSTHLKRINCAAYRPDFEQC------FTGDMNGNIYMWSP 364 (397)
T ss_pred EeeecccceeeEEeecCchhhh------hccccCCccccccc
Confidence 6666543 34444444432222 23455566666765
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2.1e-13 Score=162.17 Aligned_cols=240 Identities=13% Similarity=0.166 Sum_probs=184.2
Q ss_pred cccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCcee--eeccCCC-Cee
Q 000177 1480 TYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLE--SCTSHQA-PVT 1555 (1922)
Q Consensus 1480 ~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~--tL~gHss-~Vt 1555 (1922)
..+|+++.....+..-..-..++.+.--. .+|.++.|.|+|. .+++++....+++||+.+.+... ...|+.. .+.
T Consensus 229 lvaG~d~~lrifqvDGk~N~~lqS~~l~~-fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e 307 (514)
T KOG2055|consen 229 LVAGLDGTLRIFQVDGKVNPKLQSIHLEK-FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSME 307 (514)
T ss_pred EEecCCCcEEEEEecCccChhheeeeecc-CccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhh
Confidence 34555544433333333333444444444 7899999999999 99999999999999998887543 3455553 333
Q ss_pred EEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEec--c-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceee
Q 000177 1556 LVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFE--G-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1556 sLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~--g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~ 1631 (1922)
.. ..++++++|+. |..|.|.|....+ +..+.+|+ | +..+.|+.+++.|+.+ +.+|.|.+||+++..++.
T Consensus 308 ~F--eVShd~~fia~~G~~G~I~lLhakT--~eli~s~KieG~v~~~~fsSdsk~l~~~---~~~GeV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 308 RF--EVSHDSNFIAIAGNNGHIHLLHAKT--KELITSFKIEGVVSDFTFSSDSKELLAS---GGTGEVYVWNLRQNSCLH 380 (514)
T ss_pred ee--EecCCCCeEEEcccCceEEeehhhh--hhhhheeeeccEEeeEEEecCCcEEEEE---cCCceEEEEecCCcceEE
Confidence 33 67999999988 7799999999988 77777765 3 4889999999999888 788999999999999999
Q ss_pred eeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCC------CcceeeeccCCCce-EEEEecCCCEEEEEe
Q 000177 1632 KLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN------SVPVHRFDQFTDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1632 tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt------gk~I~kf~gh~~~V-sVaFSPdG~~LASGS 1699 (1922)
++.+.- +-....++.++++.||++++ .|||..+ .+|+..+......| ++.|+|+++.|+++|
T Consensus 381 rf~D~G------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 381 RFVDDG------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred EEeecC------ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 987321 22234489999999999998 7999663 57899998888888 999999999999999
Q ss_pred -------EEEecCCCeEEEEEcCCC-----ceeEEEccCCCEEEEE
Q 000177 1700 -------EVWDLRKFRLLRSVPSLD-----QTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1700 -------eIWDLrTgklL~tl~gH~-----~~sVaFSPdG~~LaSg 1733 (1922)
++-++.+......++... .+|++|||.|-+|+.|
T Consensus 455 ~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvG 500 (514)
T KOG2055|consen 455 RVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVG 500 (514)
T ss_pred hccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEee
Confidence 477777666666665332 2799999999999998
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=9.9e-14 Score=165.48 Aligned_cols=211 Identities=13% Similarity=0.228 Sum_probs=170.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCC-----
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASS----- 1583 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t----- 1583 (1922)
++|.|++-+|+|.+|+.|+-.|.|++|.+.+|..+..+.+|-..|++| .|+.||.+|+|+ .||.|.+|++-.
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL--~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL--KFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE--EEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 789999999999999999999999999999999999999999999999 899999999995 599999998743
Q ss_pred --CCCCcceEeccc----eeE--EEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1584 --IAGGPMHSFEGC----KAA--RFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1584 --~~gk~l~tf~gh----~sV--aFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
...++++.|.+| +.+ .+.+...+++++ +.|.++++||+..|..+.++. .......++.+|-
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta---S~D~t~k~wdlS~g~LLlti~--------fp~si~av~lDpa 228 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA---SEDRTIKLWDLSLGVLLLTIT--------FPSSIKAVALDPA 228 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEe---cCCceEEEEEeccceeeEEEe--------cCCcceeEEEccc
Confidence 124567888877 333 344445688998 999999999999999988876 2355667999999
Q ss_pred CCeEeecc---EEEEcC------------------CCcceeeeccCCC--ce-EEEEecCCCEEEEEeE-----EEecCC
Q 000177 1656 DTMLLWNG---ILWDRR------------------NSVPVHRFDQFTD--HG-GGGFHPAGNEVIINSE-----VWDLRK 1706 (1922)
Q Consensus 1656 G~lLaSgg---rLWDlr------------------tgk~I~kf~gh~~--~V-sVaFSPdG~~LASGSe-----IWDLrT 1706 (1922)
++.+..|+ +||-.. .+..+..|.||.+ .| |++.+-||..|++|++ |||+.+
T Consensus 229 e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 229 ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 99888777 444322 1234567788887 77 9999999999999993 999999
Q ss_pred CeEEEEEcCC--CceeEEEccCCCEEEEE
Q 000177 1707 FRLLRSVPSL--DQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1707 gklL~tl~gH--~~~sVaFSPdG~~LaSg 1733 (1922)
.++++++.-. ..+.+.++|--+.++.+
T Consensus 309 ~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~ 337 (476)
T KOG0646|consen 309 KQCIRTLQTSKGPVTNLQINPLERGIILF 337 (476)
T ss_pred HHHHHHHhhhccccceeEeeccccceecc
Confidence 9999988722 22788887765544443
No 127
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=2.8e-13 Score=155.53 Aligned_cols=201 Identities=19% Similarity=0.250 Sum_probs=158.3
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSS--HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~--lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
+.|...+-..+..+-.|. +.|++|.|.++-. +|++|+.||.|.||++.+..++.++++|.+.|+.| +.+|.+++.
T Consensus 66 ~IYDm~k~~qlg~ll~Ha-gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~l--siHPS~KLA 142 (362)
T KOG0294|consen 66 HIYDMRKRKQLGILLSHA-GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDL--SIHPSGKLA 142 (362)
T ss_pred EEEeccchhhhcceeccc-cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccccee--EecCCCceE
Confidence 344455666777888899 9999999999765 99999999999999999999999999999999999 899999999
Q ss_pred EE-ecCCcEEEeccCCCCCCcceEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1569 LS-SSSQDVHLWNASSIAGGPMHSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1569 aS-SsDgtVkLWDl~t~~gk~l~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++ |.|+.+++||+-.+....+..+.. .+.+.|+|.|.+|+.+ + ...|-||.+.+.+....+. ....
T Consensus 143 LsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~---~-~~~i~i~q~d~A~v~~~i~--------~~~r 210 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS---G-RNKIDIYQLDNASVFREIE--------NPKR 210 (362)
T ss_pred EEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE---e-ccEEEEEecccHhHhhhhh--------cccc
Confidence 88 889999999998732222333333 2669999999988886 3 3558999999877666554 1122
Q ss_pred ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEE--ecCCCEEEEEe-----EEEecCCC
Q 000177 1647 YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGF--HPAGNEVIINS-----EVWDLRKF 1707 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaF--SPdG~~LASGS-----eIWDLrTg 1707 (1922)
..++.|.. +..+++++ .+||..+..+...|.+|.+.| .+.+ .|.+.+|++.| +|||++..
T Consensus 211 ~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 211 ILCATFLD-GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceeeeecC-CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 33355554 44555555 899999999999999999999 5542 57789999998 59999865
No 128
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.53 E-value=5.7e-14 Score=163.07 Aligned_cols=233 Identities=15% Similarity=0.225 Sum_probs=175.0
Q ss_pred cCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeee
Q 000177 1482 SGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHL 1561 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~af 1561 (1922)
|+.+|....|+ .+....+++|+.|. +.|..++++. ..++|++.|.+|+.|.++- .++.++.| .+.+..| ..
T Consensus 85 Gs~DG~VkiWn--lsqR~~~~~f~AH~-G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gI--dh 155 (433)
T KOG0268|consen 85 GSCDGEVKIWN--LSQRECIRTFKAHE-GLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGI--DH 155 (433)
T ss_pred cccCceEEEEe--hhhhhhhheeeccc-CceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-ccccccc--cc
Confidence 44555444444 46667788999999 9999999987 7899999999999999854 56677754 3456666 44
Q ss_pred cCCCcEEEEecCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1562 SGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1562 SpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
+..+..++||. ..|.|||.+. ..|+.+++. +.++.|+|... .|++| +.|+.|.+||++++++++.+.
T Consensus 156 ~~~~~~FaTcG-e~i~IWD~~R--~~Pv~smswG~Dti~svkfNpvETsILas~---~sDrsIvLyD~R~~~Pl~KVi-- 227 (433)
T KOG0268|consen 156 HRKNSVFATCG-EQIDIWDEQR--DNPVSSMSWGADSISSVKFNPVETSILASC---ASDRSIVLYDLRQASPLKKVI-- 227 (433)
T ss_pred ccccccccccC-ceeeeccccc--CCccceeecCCCceeEEecCCCcchheeee---ccCCceEEEecccCCccceee--
Confidence 44455666643 2489999987 667777653 58999999754 55555 789999999999999888765
Q ss_pred cccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC-cceeeeccCCCce-EEEEecCCCEEEEEe-----EEEec
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDL 1704 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDL 1704 (1922)
.+-..+.++|+|.+-.++++. +.||++.- .++..+.+|...+ ++.|||.|+.+++|| +||..
T Consensus 228 ------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 228 ------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred ------eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence 234455699999666666666 88898864 5889999999988 999999999999999 58888
Q ss_pred CCCeEEEEEc---CCCceeEEEccCCCEEEEEEccC
Q 000177 1705 RKFRLLRSVP---SLDQTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1705 rTgklL~tl~---gH~~~sVaFSPdG~~LaSgs~~d 1737 (1922)
+.++.-..+. .....+|.||.|.++|++|+.+.
T Consensus 302 ~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 302 NHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred CCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence 7654332221 12226999999999999996443
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=4.9e-14 Score=175.09 Aligned_cols=180 Identities=14% Similarity=0.222 Sum_probs=143.5
Q ss_pred CceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQ 1574 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDg 1574 (1922)
+-+.+..|..|. ..|+++.|++ ...+|++||.||+||+||+...+...++.+....|..|+|...+ +.++++ .+.|
T Consensus 122 rnk~l~~f~EH~-Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~-~~~F~s~~dsG 199 (839)
T KOG0269|consen 122 RNKLLTVFNEHE-RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY-GNKFASIHDSG 199 (839)
T ss_pred cchhhhHhhhhc-cceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC-CceEEEecCCc
Confidence 345567889999 9999999998 56799999999999999999999999999999999999544443 344445 5688
Q ss_pred cEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce--eeeeccccccccCCCCcce
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL--EAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~--i~tL~d~s~~~~~~gh~~~ 1648 (1922)
.+++||++.. .++...|..| .|+.|||++.+|+|| +.|++|+|||+.+++. +.++. ...+..
T Consensus 200 ~lqlWDlRqp-~r~~~k~~AH~GpV~c~nwhPnr~~lATG---GRDK~vkiWd~t~~~~~~~~tIn--------Tiapv~ 267 (839)
T KOG0269|consen 200 YLQLWDLRQP-DRCEKKLTAHNGPVLCLNWHPNREWLATG---GRDKMVKIWDMTDSRAKPKHTIN--------TIAPVG 267 (839)
T ss_pred eEEEeeccCc-hhHHHHhhcccCceEEEeecCCCceeeec---CCCccEEEEeccCCCccceeEEe--------ecceee
Confidence 9999999873 4566667665 789999999999999 8999999999986543 33332 245666
Q ss_pred EEEEcCCCCeEe-ecc-------EEEEcCCC-cceeeeccCCCce-EEEEec
Q 000177 1649 QIHFSPSDTMLL-WNG-------ILWDRRNS-VPVHRFDQFTDHG-GGGFHP 1690 (1922)
Q Consensus 1649 vVaFSPdG~lLa-Sgg-------rLWDlrtg-k~I~kf~gh~~~V-sVaFSP 1690 (1922)
.+.|-|...+.+ +++ ++||++.. -|.++|..|...+ .++|-.
T Consensus 268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred eeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 799999886554 554 99999966 4788999999988 666654
No 130
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.51 E-value=1.3e-12 Score=150.21 Aligned_cols=257 Identities=16% Similarity=0.170 Sum_probs=177.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------C-----ceeeec-cCCCCeeEEEee-----ecCCCcEEEEe-c
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSS-------S-----PLESCT-SHQAPVTLVQSH-----LSGETQLLLSS-S 1572 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg-------k-----~l~tL~-gHss~VtsLq~a-----fSpDG~lLaSS-s 1572 (1922)
...|.|||||..|++-+.|..+.+|++... . ...++. .....|+..+|. -.|+..+++++ .
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456889999999999999999999998421 0 111121 123456666441 23677777775 4
Q ss_pred CCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEEC-CCCceeeeeccccccccC
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDI-QTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDl-rTgk~i~tL~d~s~~~~~ 1642 (1922)
+.-|++||.-+ ++...++.+ ..+++|+|||.+|++| ..++|++||+ +.|..............+
T Consensus 132 ~~PIh~wdaft--G~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrcirvFdt~RpGr~c~vy~t~~~~k~g 205 (406)
T KOG2919|consen 132 DQPIHLWDAFT--GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRCIRVFDTSRPGRDCPVYTTVTKGKFG 205 (406)
T ss_pred cCceeeeeccc--cccccchhhhhhHHhhhhheeEEecCCCCeEeec----ccceEEEeeccCCCCCCcchhhhhccccc
Confidence 99999999988 776666654 3789999999999984 6789999999 666543333200000111
Q ss_pred CCCcceEEEEcCCCC-eEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE------EEecCC-Ce
Q 000177 1643 RGHAYSQIHFSPSDT-MLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE------VWDLRK-FR 1708 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~-lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe------IWDLrT-gk 1708 (1922)
...-+.+++|+|... +++.++ -||.-..+.++..+-+|.+.| .++|+++|+.|.+|.+ .||+|. ..
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 122234499999876 666666 456555677899999999999 9999999999999993 899986 45
Q ss_pred EEEEEcCCCc---ee--EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCce-eeee-ccCCceEEE
Q 000177 1709 LLRSVPSLDQ---TT--ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSD-IATI-PVDRCVLDF 1781 (1922)
Q Consensus 1709 lL~tl~gH~~---~s--VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~-IaTi-dvkr~I~dL 1781 (1922)
++..+..|.. .. ....|+|++|+++. ....+++||..++-. +..+ ..+..++.+
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~-------------------tdG~V~vwdlk~~gn~~sv~~~~sd~vNgv 346 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGD-------------------TDGSVRVWDLKDLGNEVSVTGNYSDTVNGV 346 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccC-------------------CCccEEEEecCCCCCcccccccccccccce
Confidence 5656665543 24 44568999999983 234567777776554 2222 225568899
Q ss_pred EEcCCCceEEEE
Q 000177 1782 ATERTDSFVGLI 1793 (1922)
Q Consensus 1782 a~SPdds~LAVV 1793 (1922)
+++|.=..+|+.
T Consensus 347 slnP~mpilats 358 (406)
T KOG2919|consen 347 SLNPIMPILATS 358 (406)
T ss_pred ecCcccceeeec
Confidence 999986666654
No 131
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.50 E-value=3.1e-13 Score=161.28 Aligned_cols=194 Identities=18% Similarity=0.302 Sum_probs=144.0
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCC-------ceeeeccCCCCeeEEEeeecCCCc-E
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDS-SHIAVGSHTKELKIFDSNSSS-------PLESCTSHQAPVTLVQSHLSGETQ-L 1567 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tgk-------~l~tL~gHss~VtsLq~afSpDG~-l 1567 (1922)
.++|-.+|+||. ..=+.+.|++.. -.|++|+.|++|.+||+.... ....|.+|...|..+ +|++-.. +
T Consensus 166 ~~~Pdl~L~gH~-~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV--~~h~~h~~l 242 (422)
T KOG0264|consen 166 ECRPDLRLKGHE-KEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDV--AWHPLHEDL 242 (422)
T ss_pred cCCCceEEEeec-ccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehh--hccccchhh
Confidence 456667889999 667789999944 489999999999999997543 345679999999999 5666443 3
Q ss_pred EEE-ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccc
Q 000177 1568 LLS-SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNL 1640 (1922)
Q Consensus 1568 LaS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~ 1640 (1922)
+.+ |.|+.+.|||+++...++.+...+| +|++|+|- +..|++| +.|++|.+||+|+-+ ++.++.
T Consensus 243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~---S~D~tV~LwDlRnL~~~lh~~e------ 313 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG---SADKTVALWDLRNLNKPLHTFE------ 313 (422)
T ss_pred heeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec---cCCCcEEEeechhcccCceecc------
Confidence 344 6799999999995224455555554 89999994 5667777 889999999999743 444553
Q ss_pred cCCCCcceE--EEEcCCCCeEe-ecc-----EEEEcCCC--------------cceeeeccCCCce-EEEEecCCCEEEE
Q 000177 1641 TGRGHAYSQ--IHFSPSDTMLL-WNG-----ILWDRRNS--------------VPVHRFDQFTDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1641 ~~~gh~~~v--VaFSPdG~lLa-Sgg-----rLWDlrtg--------------k~I~kf~gh~~~V-sVaFSPdG~~LAS 1697 (1922)
+|...+ +.|+|....++ ++| .+||+..- .++..--||...| .+.|+|+..++++
T Consensus 314 ---~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 314 ---GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIA 390 (422)
T ss_pred ---CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEE
Confidence 566555 99999886655 444 89999742 1234556788888 8999999987665
Q ss_pred Ee------EEEecC
Q 000177 1698 NS------EVWDLR 1705 (1922)
Q Consensus 1698 GS------eIWDLr 1705 (1922)
.- .||.+.
T Consensus 391 SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 391 SVAEDNILQIWQMA 404 (422)
T ss_pred EecCCceEEEeecc
Confidence 44 388875
No 132
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.49 E-value=1.6e-13 Score=170.64 Aligned_cols=198 Identities=23% Similarity=0.401 Sum_probs=151.4
Q ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CCceeeeccCCCCeeEEEeeecCC-CcEEEEec-CCcEEEeccCCCC
Q 000177 1512 LTCITFLG-DSSHIAVGSHTKELKIFDSNS---SSPLESCTSHQAPVTLVQSHLSGE-TQLLLSSS-SQDVHLWNASSIA 1585 (1922)
Q Consensus 1512 Vt~LaFSP-DG~lLASGS~DGtIkIWDl~t---gk~l~tL~gHss~VtsLq~afSpD-G~lLaSSs-DgtVkLWDl~t~~ 1585 (1922)
+..|+|+. +.++|||++..|.|.+||+.. .+.+..|..|.-.|+++ .|++. ..+|++|+ ||+||+||++.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~l--dfh~tep~iliSGSQDg~vK~~DlR~-- 165 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKL--DFHSTEPNILISGSQDGTVKCWDLRS-- 165 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeee--eeccCCccEEEecCCCceEEEEeeec--
Confidence 44567775 677999999999999999987 56677889999999999 66654 35677755 99999999997
Q ss_pred CCcceEecc----ceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCCcceE--EEEcCCCC
Q 000177 1586 GGPMHSFEG----CKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGHAYSQ--IHFSPSDT 1657 (1922)
Q Consensus 1586 gk~l~tf~g----h~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~ 1657 (1922)
.+.+.+|.+ ++.|.|+| .+.+|+++ ...|.+.+||++... +...+. .|..++ +.|+|++.
T Consensus 166 ~~S~~t~~~nSESiRDV~fsp~~~~~F~s~---~dsG~lqlWDlRqp~r~~~k~~---------AH~GpV~c~nwhPnr~ 233 (839)
T KOG0269|consen 166 KKSKSTFRSNSESIRDVKFSPGYGNKFASI---HDSGYLQLWDLRQPDRCEKKLT---------AHNGPVLCLNWHPNRE 233 (839)
T ss_pred ccccccccccchhhhceeeccCCCceEEEe---cCCceEEEeeccCchhHHHHhh---------cccCceEEEeecCCCc
Confidence 555556544 58899999 57889998 778999999999643 444443 455554 89999999
Q ss_pred eEeecc-----EEEEcCCCc--ceeeeccCCCceEEEEecCCC-EEEEEe-------EEEecCC-CeEEEEEcCCCc--e
Q 000177 1658 MLLWNG-----ILWDRRNSV--PVHRFDQFTDHGGGGFHPAGN-EVIINS-------EVWDLRK-FRLLRSVPSLDQ--T 1719 (1922)
Q Consensus 1658 lLaSgg-----rLWDlrtgk--~I~kf~gh~~~VsVaFSPdG~-~LASGS-------eIWDLrT-gklL~tl~gH~~--~ 1719 (1922)
+|+||| +|||..+++ +++++........+.|-|... .|++++ .|||++. +-+..++..|.. +
T Consensus 234 ~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 234 WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT 313 (839)
T ss_pred eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc
Confidence 999999 999998765 455554332222899999865 566666 5999975 456677878876 6
Q ss_pred eEEEcc
Q 000177 1720 TITFNA 1725 (1922)
Q Consensus 1720 sVaFSP 1725 (1922)
.++|-.
T Consensus 314 ~i~W~~ 319 (839)
T KOG0269|consen 314 GIAWDS 319 (839)
T ss_pred ceeccC
Confidence 777765
No 133
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.48 E-value=1.2e-12 Score=154.26 Aligned_cols=272 Identities=17% Similarity=0.227 Sum_probs=176.1
Q ss_pred CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC---------ceeeeccCCCCeeEEEeeecCCCcEEEEec-CCc
Q 000177 1507 DAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSS---------PLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQD 1575 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk---------~l~tL~gHss~VtsLq~afSpDG~lLaSSs-Dgt 1575 (1922)
|...+|..+.|.++.. +|+||+.|..|+||-++.+. .+..+..|+..|++| .|+|+|.+|++|. ++.
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~v--Rf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVV--RFSPDGELLASGGDGGE 88 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEE--EEcCCcCeeeecCCCce
Confidence 3335899999999776 99999999999999986432 234568999999999 8999999999965 789
Q ss_pred EEEeccCCC--------------CCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccc
Q 000177 1576 VHLWNASSI--------------AGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTS 1637 (1922)
Q Consensus 1576 VkLWDl~t~--------------~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s 1637 (1922)
|.+|-.... .......+.+| ..++|+|++.+++++ +.|+++++||+..|+....+.
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~---s~dns~~l~Dv~~G~l~~~~~--- 162 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG---SVDNSVRLWDVHAGQLLAILD--- 162 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee---eccceEEEEEeccceeEeecc---
Confidence 999987610 01112233333 679999999999999 889999999999999988875
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCccee---------------------eeccCCC--ce-EEEE
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVH---------------------RFDQFTD--HG-GGGF 1688 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~---------------------kf~gh~~--~V-sVaF 1688 (1922)
.+.|...-++|.|-++++++-+ +.+.+...+.++ -|...+. .. .++|
T Consensus 163 ----dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 163 ----DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred ----ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 2345555599999999999766 344433322211 1111111 11 6799
Q ss_pred ecCCCEEEEEeEEEecCCCe---------------EEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccc
Q 000177 1689 HPAGNEVIINSEVWDLRKFR---------------LLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVK 1751 (1922)
Q Consensus 1689 SPdG~~LASGSeIWDLrTgk---------------lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~k 1751 (1922)
+|+|.++++...++....+- +...+++... ..+.|+|- .|--..-....+... .+.++.
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV---y~elrp~~~~~~~~~-lpyrlv 314 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV---YYELRPLSSEKFLFV-LPYRLV 314 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeee---EEEeccccccccccc-cccceE
Confidence 99999999998666554222 1222222222 23334331 111100111111000 011211
Q ss_pred cC--CcceEEEEecCCCceeeeecc--CCceEEEEEcCCCceEEEEe
Q 000177 1752 HP--LFAAFRTVDAINYSDIATIPV--DRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1752 sp--~~ssFrt~Da~dys~IaTidv--kr~I~dLa~SPdds~LAVVe 1794 (1922)
.. ...++.++|...-.+++.++- -..|.|++|+++|.++++..
T Consensus 315 faiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS 361 (434)
T KOG1009|consen 315 FAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSS 361 (434)
T ss_pred EEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEec
Confidence 11 234566777777777776654 34599999999999999874
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.48 E-value=1.6e-12 Score=154.93 Aligned_cols=233 Identities=15% Similarity=0.198 Sum_probs=165.7
Q ss_pred eecCceeeEEecCCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCC----ceeeeccCCCCeeEEEeeecC--CC
Q 000177 1494 VYSRFRPWRTCRDDAGALLTCITFLGDS--SHIAVGSHTKELKIFDSNSSS----PLESCTSHQAPVTLVQSHLSG--ET 1565 (1922)
Q Consensus 1494 i~srfrpirtLrgH~d~~Vt~LaFSPDG--~lLASGS~DGtIkIWDl~tgk----~l~tL~gHss~VtsLq~afSp--DG 1565 (1922)
......+..+.+-|. +.|++++|+|.. +++++|+.-|+|-+||+.+.+ -+..+..|..+|.+| .|+| ..
T Consensus 172 ~l~~~~~~~v~kv~~-~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l--~F~P~n~s 248 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTD-RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGL--KFSPANTS 248 (498)
T ss_pred ccccceecceeEecc-cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccce--EecCCChh
Confidence 344556667777888 999999999954 589999999999999995332 345678999999999 6666 45
Q ss_pred cEEEEecCCcEEEeccCCCCCCcceEe-------c----------------------------------------cceeE
Q 000177 1566 QLLLSSSSQDVHLWNASSIAGGPMHSF-------E----------------------------------------GCKAA 1598 (1922)
Q Consensus 1566 ~lLaSSsDgtVkLWDl~t~~gk~l~tf-------~----------------------------------------gh~sV 1598 (1922)
+++.+|.||+|++-|++......+.+. . .++++
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence 677778899999998875211111111 0 02578
Q ss_pred EEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcC---
Q 000177 1599 RFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRR--- 1669 (1922)
Q Consensus 1599 aFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlr--- 1669 (1922)
+++|. ..+|+|+ +.|++++|||++.-..... |.+....|.+.++.+.|||++-.|++.+ +|||..
T Consensus 329 ~~NP~~p~~laT~---s~D~T~kIWD~R~l~~K~s---p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 329 ALNPVCPWFLATA---SLDQTAKIWDLRQLRGKAS---PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred ecCCCCchheeec---ccCcceeeeehhhhcCCCC---cceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccc
Confidence 99995 5677887 8999999999986433221 1112222556667799999998888777 999984
Q ss_pred -CCcceeeecc---CCCce---EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc----eeEEEccCCCEEEEE
Q 000177 1670 -NSVPVHRFDQ---FTDHG---GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ----TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1670 -tgk~I~kf~g---h~~~V---sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~----~sVaFSPdG~~LaSg 1733 (1922)
.-.+..++.. +..++ ...|+|+..+|++|- +|+|-..++++..+..... .-..|+|-+..+++|
T Consensus 403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAG 482 (498)
T ss_pred ccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceecc
Confidence 2223333321 11233 679999999999998 5999988888877654433 467899999988887
Q ss_pred Ec
Q 000177 1734 LR 1735 (1922)
Q Consensus 1734 s~ 1735 (1922)
+.
T Consensus 483 ~~ 484 (498)
T KOG4328|consen 483 GN 484 (498)
T ss_pred CC
Confidence 53
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.47 E-value=1.2e-11 Score=148.20 Aligned_cols=256 Identities=16% Similarity=0.228 Sum_probs=178.4
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHL 1578 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkL 1578 (1922)
+...+|+++...-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.++ ..-.+|.+|..+.|..|.+
T Consensus 236 k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L--~~lr~GtllSGgKDRki~~ 312 (626)
T KOG2106|consen 236 KRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSL--CMLRDGTLLSGGKDRKIIL 312 (626)
T ss_pred EEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEE--EEecCccEeecCccceEEe
Confidence 344566776657799999999987 7899999999999998888777777999999999 7788999888567999999
Q ss_pred eccCCCCCCcceEec------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1579 WNASSIAGGPMHSFE------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
||-. -+.++..+ .++.++=.. +. |+.| +..+.|..=.++++-.+..+ +++...+-++.
T Consensus 313 Wd~~---y~k~r~~elPe~~G~iRtv~e~~-~d-i~vG---TtrN~iL~Gt~~~~f~~~v~--------gh~delwgla~ 376 (626)
T KOG2106|consen 313 WDDN---YRKLRETELPEQFGPIRTVAEGK-GD-ILVG---TTRNFILQGTLENGFTLTVQ--------GHGDELWGLAT 376 (626)
T ss_pred cccc---ccccccccCchhcCCeeEEecCC-Cc-EEEe---eccceEEEeeecCCceEEEE--------ecccceeeEEc
Confidence 9933 22222221 134333222 22 5555 44556655555554443333 24445555999
Q ss_pred cCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE-----EEecCCCeEEEEEcCCCc-eeE
Q 000177 1653 SPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE-----VWDLRKFRLLRSVPSLDQ-TTI 1721 (1922)
Q Consensus 1653 SPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe-----IWDLrTgklL~tl~gH~~-~sV 1721 (1922)
+|+.+.+++++ +||+ ..+++.+..-.....++.|||.| .|+.|+- +.|..+..++..-....+ ++|
T Consensus 377 hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v 453 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVV 453 (626)
T ss_pred CCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEE
Confidence 99999999999 8999 55666655444445599999999 8888882 668887555543333222 899
Q ss_pred EEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEE-ecCCCceeeeeccCCceEEEEEcCCCceEEEE
Q 000177 1722 TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTV-DAINYSDIATIPVDRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1722 aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~-Da~dys~IaTidvkr~I~dLa~SPdds~LAVV 1793 (1922)
+|+|+|.+|+.++.++..-+ +++- +...|+.+..... .+|..+.|+++++++...
T Consensus 454 ~ysp~G~~lAvgs~d~~iyi----------------y~Vs~~g~~y~r~~k~~g-s~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 454 RYSPDGAFLAVGSHDNHIYI----------------YRVSANGRKYSRVGKCSG-SPITHLDWSSDSQFLVSN 509 (626)
T ss_pred EEcCCCCEEEEecCCCeEEE----------------EEECCCCcEEEEeeeecC-ceeEEeeecCCCceEEec
Confidence 99999999999976653222 1111 1234554444445 789999999999987754
No 136
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.3e-13 Score=177.76 Aligned_cols=217 Identities=18% Similarity=0.302 Sum_probs=163.4
Q ss_pred CCEEEEEEcCCCCE----EEEEeCCCcEEEEECCC---C---CceeeeccCCCCeeEEEeeecCCCc-EEEEe-cCCcEE
Q 000177 1510 ALLTCITFLGDSSH----IAVGSHTKELKIFDSNS---S---SPLESCTSHQAPVTLVQSHLSGETQ-LLLSS-SSQDVH 1577 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~l----LASGS~DGtIkIWDl~t---g---k~l~tL~gHss~VtsLq~afSpDG~-lLaSS-sDgtVk 1577 (1922)
..++.++|.+.|.. |+.|..||.|.+||... + ..+.++..|++.|..+ .|++... +|++| +||.|.
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gL--DfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGL--DFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeee--eccccCCceeeccCCCCcEE
Confidence 46889999987765 99999999999999865 2 2356778899999999 7888755 88886 599999
Q ss_pred EeccCCCCCCcce-----EeccceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1578 LWNASSIAGGPMH-----SFEGCKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1578 LWDl~t~~gk~l~-----tf~gh~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
|||+... ..+.. ....+.+++|+.. ...|+++ +.++++.|||++..+.+..+.+.. ......++.
T Consensus 143 iWDlnn~-~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~---s~sg~~~iWDlr~~~pii~ls~~~-----~~~~~S~l~ 213 (1049)
T KOG0307|consen 143 IWDLNKP-ETPFTPGSQAPPSEIKCLSWNRKVSHILASG---SPSGRAVIWDLRKKKPIIKLSDTP-----GRMHCSVLA 213 (1049)
T ss_pred EeccCCc-CCCCCCCCCCCcccceEeccchhhhHHhhcc---CCCCCceeccccCCCcccccccCC-----Cccceeeee
Confidence 9999872 12211 1224689999985 5566776 788999999999988777775211 012233599
Q ss_pred EcCCCC-eEeecc--------EEEEcCCC-cceeeeccCCCce-EEEEecCC-CEEEEEeE-----EEecCCCeEEEEEc
Q 000177 1652 FSPSDT-MLLWNG--------ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAG-NEVIINSE-----VWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1652 FSPdG~-lLaSgg--------rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG-~~LASGSe-----IWDLrTgklL~tl~ 1714 (1922)
|+|++- .|++++ .+||+|.. .+++.+.+|...+ ++.|++.+ .+++++++ +||..|++.+..++
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 999983 233222 89999965 5889999999888 99999988 67777774 99999999999999
Q ss_pred CCCc--eeEEEccCCCEEE-EEEccC
Q 000177 1715 SLDQ--TTITFNARGDVIY-AILRRN 1737 (1922)
Q Consensus 1715 gH~~--~sVaFSPdG~~La-Sgs~~d 1737 (1922)
...+ ..|.|+|...-++ +++.+.
T Consensus 294 ~~~nW~fdv~w~pr~P~~~A~asfdg 319 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNPSVMAAASFDG 319 (1049)
T ss_pred CCCcceeeeeecCCCcchhhhheecc
Confidence 7555 5899999887444 443333
No 137
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.46 E-value=2.4e-12 Score=161.32 Aligned_cols=176 Identities=18% Similarity=0.242 Sum_probs=152.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee---ccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC---TSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL---~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~ 1585 (1922)
..+++|+.++.|++.+.|+..|+|-+||+++|-...+| ..|..+|+.+ +...-++++++ |.+|.+++||...
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl--a~D~~n~~~vsa~~~Gilkfw~f~~-- 524 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL--AVDGTNRLLVSAGADGILKFWDFKK-- 524 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEE--EecCCCceEEEccCcceEEEEecCC--
Confidence 67999999999999999999999999999999988888 5899999999 67777788888 6799999999987
Q ss_pred CCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1586 GGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1586 gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
..++.++.- ..++..+.....++.+ ..|-.|+++|+.|.+.+..|. +++...+.++|||||++|++.
T Consensus 525 k~l~~~l~l~~~~~~iv~hr~s~l~a~~---~ddf~I~vvD~~t~kvvR~f~-------gh~nritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 525 KVLKKSLRLGSSITGIVYHRVSDLLAIA---LDDFSIRVVDVVTRKVVREFW-------GHGNRITDMTFSPDGRWLISA 594 (910)
T ss_pred cceeeeeccCCCcceeeeeehhhhhhhh---cCceeEEEEEchhhhhhHHhh-------ccccceeeeEeCCCCcEEEEe
Confidence 555565542 4778888888888887 788999999999999888885 334445559999999999988
Q ss_pred c-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1663 G-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1663 g-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
+ ++||+.++.+|-.+.-...++++.|+|+|.+||+..
T Consensus 595 smD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVH 636 (910)
T ss_pred ecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEE
Confidence 7 999999999999887777777999999999999998
No 138
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.45 E-value=1.4e-12 Score=152.84 Aligned_cols=209 Identities=19% Similarity=0.292 Sum_probs=156.8
Q ss_pred EecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------CceeeeccCCCCeeEEEeeecCC--CcEEEEec
Q 000177 1503 TCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSS-------SPLESCTSHQAPVTLVQSHLSGE--TQLLLSSS 1572 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tg-------k~l~tL~gHss~VtsLq~afSpD--G~lLaSSs 1572 (1922)
.+.||+ ++|..++|+| +.+.||+||.|.+|+||.+..+ +++..+.||...|..| .|+|. +-++.+|.
T Consensus 76 ~v~GHt-~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V--~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHT-APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLV--QWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCcc-ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEE--eecccchhhHhhccC
Confidence 467999 9999999999 7789999999999999998654 4467789999999999 55664 33444478
Q ss_pred CCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
|.+|.+||+.+ +..+.++.. ++++.|+.+|.+|+++ +.|+.|+|||.++++.+..-. ...|+....
T Consensus 153 Dn~v~iWnv~t--geali~l~hpd~i~S~sfn~dGs~l~Tt---ckDKkvRv~dpr~~~~v~e~~------~heG~k~~R 221 (472)
T KOG0303|consen 153 DNTVSIWNVGT--GEALITLDHPDMVYSMSFNRDGSLLCTT---CKDKKVRVIDPRRGTVVSEGV------AHEGAKPAR 221 (472)
T ss_pred CceEEEEeccC--CceeeecCCCCeEEEEEeccCCceeeee---cccceeEEEcCCCCcEeeecc------cccCCCcce
Confidence 99999999998 776666652 3889999999999999 899999999999999877653 123555556
Q ss_pred EEEcCCCCeEeecc---------EEEEcCCCc---ceeeeccCCCceEEEEecCCCEEEEEe------EEEecCCCe---
Q 000177 1650 IHFSPSDTMLLWNG---------ILWDRRNSV---PVHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFR--- 1708 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg---------rLWDlrtgk---~I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgk--- 1708 (1922)
+-|-.+|. +++.| -|||..+-. ....++..++..--.|.|+.+.|..++ +.|.+....
T Consensus 222 aifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~ 300 (472)
T KOG0303|consen 222 AIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFV 300 (472)
T ss_pred eEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCcee
Confidence 88999999 55555 699977543 244555555544678899999888888 366665433
Q ss_pred -EEEEEcCCC-ceeEEEccC
Q 000177 1709 -LLRSVPSLD-QTTITFNAR 1726 (1922)
Q Consensus 1709 -lL~tl~gH~-~~sVaFSPd 1726 (1922)
-+.++.... +..+.|-|.
T Consensus 301 hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 301 HYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EEecccccCCcccccccccc
Confidence 344444332 256666664
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.1e-12 Score=156.58 Aligned_cols=201 Identities=18% Similarity=0.196 Sum_probs=153.7
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCCceeeeccCC
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN---------SSSPLESCTSHQ 1551 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~---------tgk~l~tL~gHs 1551 (1922)
.|+..++.+.|. .+.++.+.++.+|- ..|+|+.|+.||.+|+|||+||.|.+|.+. +-+++..|..|+
T Consensus 98 ag~i~g~lYlWe--lssG~LL~v~~aHY-Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 98 AGTISGNLYLWE--LSSGILLNVLSAHY-QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT 174 (476)
T ss_pred eecccCcEEEEE--eccccHHHHHHhhc-cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence 344555555544 58888899999999 999999999999999999999999999873 346778999999
Q ss_pred CCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC
Q 000177 1552 APVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1552 s~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg 1627 (1922)
-+|++++..+.+....|+| |.|.++++||+.. +..+.++.- .++++..|-++.++.| +.+|.|.+.++.+.
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~--g~LLlti~fp~si~av~lDpae~~~yiG---t~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSL--GVLLLTITFPSSIKAVALDPAERVVYIG---TEEGKIFQNLLFKL 249 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEecc--ceeeEEEecCCcceeEEEcccccEEEec---CCcceEEeeehhcC
Confidence 9999997666644455555 6799999999998 777766542 5899999999999998 88999999887643
Q ss_pred c--ee------eeeccccccccCCCCc----ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEe
Q 000177 1628 Q--LE------AKLSDTSVNLTGRGHA----YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFH 1689 (1922)
Q Consensus 1628 k--~i------~tL~d~s~~~~~~gh~----~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFS 1689 (1922)
. .. ..+. ..-.....||. +.+++++-||.+|++|+ .+||+.+.++++++....+.| .+.+.
T Consensus 250 ~~~~~~v~~k~~~~~-~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEE-NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQIN 328 (476)
T ss_pred Ccccccccccccccc-cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEee
Confidence 3 11 1111 01111122444 45699999999999998 899999999999887655666 66665
Q ss_pred c
Q 000177 1690 P 1690 (1922)
Q Consensus 1690 P 1690 (1922)
|
T Consensus 329 ~ 329 (476)
T KOG0646|consen 329 P 329 (476)
T ss_pred c
Confidence 5
No 140
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.43 E-value=1.1e-12 Score=160.83 Aligned_cols=221 Identities=12% Similarity=0.195 Sum_probs=172.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC-CCcEEEEe-cCCcEEEeccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp-DG~lLaSS-sDgtVkLWDl~t~~gk 1587 (1922)
.+|.|++.||+|++||+|..-|+++||++..-.....+.+|...|.|+.+++-. ..++|+++ .|.-|+|||+.. ...
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-ny~ 538 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-NYD 538 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc-ccc
Confidence 579999999999999999999999999999988888999999999999554322 24577774 599999999975 255
Q ss_pred cceEeccc----eeEEEcCCC--CEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1588 PMHSFEGC----KAARFSNSG--NLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1588 ~l~tf~gh----~sVaFSPDG--~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
++.++.+| +++.|.-+| ..++++ +.|+.|. |+... ......|... .+.........++..|+-++++
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~Misc---GADksim-Fr~~qk~~~g~~f~r~--t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISC---GADKSIM-FRVNQKASSGRLFPRH--TQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEec---cCchhhh-eehhccccCceecccc--ccccccceEEEeeeCCCcceEE
Confidence 67888876 789998876 678888 7888765 44332 1111222200 0000111223389999999999
Q ss_pred ecc-----EEEEcCCCcceeeeccCCC----ceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEc
Q 000177 1661 WNG-----ILWDRRNSVPVHRFDQFTD----HGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFN 1724 (1922)
Q Consensus 1661 Sgg-----rLWDlrtgk~I~kf~gh~~----~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFS 1724 (1922)
+++ +|||+.+|+.++.|++..+ .|.+...|.|.||++.. -++|.-+++++.+..||.. +.+.|.
T Consensus 613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 988 9999999999999987543 34899999999999987 3999999999999999987 899999
Q ss_pred cCCCEEEEEEccC
Q 000177 1725 ARGDVIYAILRRN 1737 (1922)
Q Consensus 1725 PdG~~LaSgs~~d 1737 (1922)
+|.++|++++.+.
T Consensus 693 nDCkHlISvsgDg 705 (1080)
T KOG1408|consen 693 NDCKHLISVSGDG 705 (1080)
T ss_pred ccchhheeecCCc
Confidence 9999999885544
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=8.9e-12 Score=143.03 Aligned_cols=228 Identities=14% Similarity=0.227 Sum_probs=162.8
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----CceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEe
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS----SPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLW 1579 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg----k~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLW 1579 (1922)
.+|. +-|.|+.|.+-|+.+|||+.|++|+|||..+. .+...+++|.+.|..|.|+...-|+.+++++ |+++.||
T Consensus 10 s~h~-DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHK-DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCc-ceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 4798 99999999999999999999999999997543 3556779999999999887666799999965 9999999
Q ss_pred ccCCCCCC-------cceEec----cceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceee------eeccccccc
Q 000177 1580 NASSIAGG-------PMHSFE----GCKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEA------KLSDTSVNL 1640 (1922)
Q Consensus 1580 Dl~t~~gk-------~l~tf~----gh~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~------tL~d~s~~~ 1640 (1922)
.=.....+ ...++. .++.+.|.|. |-+++++ +.||+++||+.-..-.+. .+.. ....
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~---~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~-~~~p 164 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA---SADGILRIYEAPDPMNLSQWTLQHEIQN-VIDP 164 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe---ccCcEEEEEecCCccccccchhhhhhhh-ccCC
Confidence 76321011 112222 2578999994 7789998 899999999875432222 2210 0001
Q ss_pred cCC-CCcceEEEEcCCC---CeEeecc----------EEEEcCCC----cceeeeccCCCce-EEEEecCC----CEEEE
Q 000177 1641 TGR-GHAYSQIHFSPSD---TMLLWNG----------ILWDRRNS----VPVHRFDQFTDHG-GGGFHPAG----NEVII 1697 (1922)
Q Consensus 1641 ~~~-gh~~~vVaFSPdG---~lLaSgg----------rLWDlrtg----k~I~kf~gh~~~V-sVaFSPdG----~~LAS 1697 (1922)
.+. .....++.|+|.. ++|+.++ +||....+ ..+.++.+|...| .++|.|+- ..||+
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 111 2234458999754 5677655 78876643 2466778899999 99999983 46788
Q ss_pred Ee----EEEecCCC--------------------eEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1698 NS----EVWDLRKF--------------------RLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1698 GS----eIWDLrTg--------------------klL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
++ +||++... +.+..+.+|.. +.+.||-.|.+|.++..+.
T Consensus 245 A~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG 310 (361)
T KOG2445|consen 245 ATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG 310 (361)
T ss_pred eecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence 87 49988731 23344556764 8999999999999885444
No 142
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.42 E-value=3.8e-10 Score=130.05 Aligned_cols=275 Identities=21% Similarity=0.337 Sum_probs=197.6
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc-EEEE-ecCC
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSH-TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ-LLLS-SSSQ 1574 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~-DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~-lLaS-SsDg 1574 (1922)
+.....+..|. ..|.+++|+|++.++++++. |+.+++|++..+..+..+.+|...|.++ .|+|++. ++++ +.|+
T Consensus 145 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 145 GKLIRTLEGHS-ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL--AFSPDGGLLIASGSSDG 221 (466)
T ss_pred CeEEEEEecCc-ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE--EEcCCcceEEEEecCCC
Confidence 67778888999 99999999999999999986 9999999999988999999999999999 7789987 5666 5699
Q ss_pred cEEEeccCCCCCCcce-EeccceeE---EEcCCCCEEEEeecCCCCCeEEEEECCCCce-eeeeccccccccCCCCcceE
Q 000177 1575 DVHLWNASSIAGGPMH-SFEGCKAA---RFSNSGNLFAALPTETSDRGILLYDIQTYQL-EAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~-tf~gh~sV---aFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~-i~tL~d~s~~~~~~gh~~~v 1649 (1922)
+|++||... +..+. .+.+|... .|+|++.+++++ +.|+.+++||+..... ...+. .+......
T Consensus 222 ~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~-------~~~~~v~~ 289 (466)
T COG2319 222 TIRLWDLST--GKLLRSTLSGHSDSVVSSFSPDGSLLASG---SSDGTIRLWDLRSSSSLLRTLS-------GHSSSVLS 289 (466)
T ss_pred cEEEEECCC--CcEEeeecCCCCcceeEeECCCCCEEEEe---cCCCcEEEeeecCCCcEEEEEe-------cCCccEEE
Confidence 999998875 66666 57776443 799999888877 8999999999997665 33221 12334455
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeec--cCCCce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEcC
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD--QFTDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~--gh~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~g 1715 (1922)
+.|+|++..+++++ .+||..+........ .|...+ .+.|.+++..++.+. .+|++...........
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 369 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG 369 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC
Confidence 89999888888754 899999887666665 666655 777744435666662 3799987774444444
Q ss_pred CC-ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC-CceEEEEEcCCCceEEEE
Q 000177 1716 LD-QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD-RCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1716 H~-~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk-r~I~dLa~SPdds~LAVV 1793 (1922)
.. ...+.|++ ...++.... ....+..|+......+...... ..+....+++++..++..
T Consensus 370 ~~~~~~~~~~~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (466)
T COG2319 370 HSNVLSVSFSP-DGRVVSSGS------------------TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430 (466)
T ss_pred CceEEEEEECC-CCCEEEEec------------------CCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEe
Confidence 44 36888888 533333111 1223445555444444444444 678888888888877642
Q ss_pred ecCCCCCccceEEEEEecC
Q 000177 1794 TMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1794 e~dds~d~dSsVRLyEVGr 1812 (1922)
..+..+++|.+..
T Consensus 431 ------~~~~~~~~~~~~~ 443 (466)
T COG2319 431 ------SSDNTIRLWDLKT 443 (466)
T ss_pred ------cCCCcEEEEeccC
Confidence 2335678887654
No 143
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.42 E-value=3.1e-13 Score=168.07 Aligned_cols=295 Identities=16% Similarity=0.232 Sum_probs=199.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcCCCCCCCCCCcccCCCCCCC--CCCCCcceeeccccccee--cccCCccccccceeee
Q 000177 1420 ITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRS--LDAPSNVTARLGTREFKS--TYSGVHRNRRDRQFVY 1495 (1922)
Q Consensus 1420 ~~LdsIVtqyLr~QH~qC~~PVtt~PpfSLl~pH~CPePk~~--lsAP~N~aaRl~sr~l~~--~~Gg~~g~r~dr~fi~ 1495 (1922)
+||-+-.+|.|......|.+.+. ++..+--+|.-.++.+. +..+.+...+.+...... +|.. .+.-. ++
T Consensus 105 pTlLgtg~qsLl~r~k~~~~~~~--~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~at~~~----akPgt-mv 177 (1113)
T KOG0644|consen 105 PTLLGTGRQSLLRRAKDIRHTVW--KGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGCATFSI----AKPGT-MV 177 (1113)
T ss_pred cchhcchhHHHHhhhhhcccccc--cccccccccccCcccccceeccCCcchhhhhcCcccccceeee----cCcHH-HH
Confidence 57888888888888777876532 33334445554444332 223333333333222110 0000 00011 35
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQ 1574 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDg 1574 (1922)
...+.++.|.+|. ..|+|+.|...|.+|+||+.|..||||..+++.++.++.||.+.|+.+ +.+.++.++++ |.|.
T Consensus 178 qkmk~ikrLlgH~-naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdl--avs~~n~~iaaaS~D~ 254 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHR-NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDL--AVSSNNTMIAAASNDK 254 (1113)
T ss_pred HHHHHHHHHHhhh-hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchh--ccchhhhhhhhcccCc
Confidence 5666777889999 999999999999999999999999999999999999999999999999 77778778887 4599
Q ss_pred cEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee--------------ec-c
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK--------------LS-D 1635 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t--------------L~-d 1635 (1922)
.|++|-+.+ +.++..+.+| ++++|+|-. +. +.||++++||.+-.-.+.. +. .
T Consensus 255 vIrvWrl~~--~~pvsvLrghtgavtaiafsP~~----ss---s~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~ 325 (1113)
T KOG0644|consen 255 VIRVWRLPD--GAPVSVLRGHTGAVTAIAFSPRA----SS---SDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE 325 (1113)
T ss_pred eEEEEecCC--CchHHHHhccccceeeeccCccc----cC---CCCCceEeccccccccccCCCCCCcccccceeeeecc
Confidence 999999998 8888888876 689999954 44 7899999999881111000 00 0
Q ss_pred c--------cccccCCCCcceEEEEcCCCCeEeecc----------------EEEEcCCCcceeeeccCCCce-EEEEec
Q 000177 1636 T--------SVNLTGRGHAYSQIHFSPSDTMLLWNG----------------ILWDRRNSVPVHRFDQFTDHG-GGGFHP 1690 (1922)
Q Consensus 1636 ~--------s~~~~~~gh~~~vVaFSPdG~lLaSgg----------------rLWDlrtgk~I~kf~gh~~~V-sVaFSP 1690 (1922)
. .-......|...+++|...+-.+++.. .+|++-+|..+|...+|...+ .+.|||
T Consensus 326 ~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 326 NNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred ccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC
Confidence 0 000111233333333333332222211 799999999999999999988 789999
Q ss_pred CCCEEE-EEe-----EEEecCCCeEEEEEc-CCCc-eeEEEccCCCEEEEE
Q 000177 1691 AGNEVI-INS-----EVWDLRKFRLLRSVP-SLDQ-TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1691 dG~~LA-SGS-----eIWDLrTgklL~tl~-gH~~-~sVaFSPdG~~LaSg 1733 (1922)
-...++ +++ -|||+-.|.+++.+. +|.. ...+||++|+.++..
T Consensus 406 fn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence 765554 333 299999888777654 4544 678899999887754
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.41 E-value=3.7e-12 Score=152.02 Aligned_cols=203 Identities=20% Similarity=0.284 Sum_probs=159.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l 1589 (1922)
+|.|+.|| .++++|+..+.|+|||+...-+.+.+++|.+.|+++ .++....+|++.+ .|.|.|..+.+ +...
T Consensus 84 Cv~~~s~S---~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v--~YN~~DeyiAsvs~gGdiiih~~~t--~~~t 156 (673)
T KOG4378|consen 84 CVACASQS---LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYV--DYNNTDEYIASVSDGGDIIIHGTKT--KQKT 156 (673)
T ss_pred HHhhhhcc---eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEE--EecCCcceeEEeccCCcEEEEeccc--Cccc
Confidence 34455554 899999999999999999777788889999999999 7777888999965 67899999987 4444
Q ss_pred eEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCe-Eee
Q 000177 1590 HSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTM-LLW 1661 (1922)
Q Consensus 1590 ~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~l-LaS 1661 (1922)
.+|.. ++-+.|+|..+++++. .+.+|.|.+||+.....+..+. ..|..++ ++|+|.... |++
T Consensus 157 t~f~~~sgqsvRll~ys~skr~lL~~--asd~G~VtlwDv~g~sp~~~~~--------~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 157 TTFTIDSGQSVRLLRYSPSKRFLLSI--ASDKGAVTLWDVQGMSPIFHAS--------EAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred cceecCCCCeEEEeecccccceeeEe--eccCCeEEEEeccCCCcccchh--------hhccCCcCcceecCCccceEEE
Confidence 44532 3678999987766554 3889999999999888777665 4576666 999998865 456
Q ss_pred cc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe---E--EEecCCC-eEEEEEcCCCc--eeEEEccCCC
Q 000177 1662 NG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS---E--VWDLRKF-RLLRSVPSLDQ--TTITFNARGD 1728 (1922)
Q Consensus 1662 gg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS---e--IWDLrTg-klL~tl~gH~~--~sVaFSPdG~ 1728 (1922)
.| .+||++..+...++.-...-..++|+++|.+|+.|+ + .||+|.. .++.++..|+. ++|+|-|.-
T Consensus 227 VG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~- 305 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP- 305 (673)
T ss_pred ecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc-
Confidence 66 799999877777665444444899999999999998 3 7899864 57888888877 899998865
Q ss_pred EEE
Q 000177 1729 VIY 1731 (1922)
Q Consensus 1729 ~La 1731 (1922)
.++
T Consensus 306 tvl 308 (673)
T KOG4378|consen 306 TVL 308 (673)
T ss_pred eee
Confidence 444
No 145
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=3.9e-12 Score=142.30 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=144.7
Q ss_pred eeeEEecCCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCc--eeeeccCCCCeeEEEeeecCCCcEEEE-ecC
Q 000177 1499 RPWRTCRDDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSSSP--LESCTSHQAPVTLVQSHLSGETQLLLS-SSS 1573 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tgk~--l~tL~gHss~VtsLq~afSpDG~lLaS-SsD 1573 (1922)
+++.+|+||. ++|+.++|.. -|.+||++++||.|.||.-..|.. ...+..|...|++|+|+++.-|-+|++ |+|
T Consensus 47 ~ll~~L~Gh~-GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 47 KLLAELTGHS-GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred eeeeEecCCC-CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 5678999999 9999999987 899999999999999999888754 345688999999998877777888888 679
Q ss_pred CcEEEeccCCCCCCcc-eEe----ccceeEEEcCC---C-----------CEEEEeecCCCCCeEEEEECCCCce--eee
Q 000177 1574 QDVHLWNASSIAGGPM-HSF----EGCKAARFSNS---G-----------NLFAALPTETSDRGILLYDIQTYQL--EAK 1632 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l-~tf----~gh~sVaFSPD---G-----------~~LaSgS~~S~DgtIrIWDlrTgk~--i~t 1632 (1922)
|+|.|.+++...+-.. ... .|+++++|.|- | ++|++| +.|+.|+||+...++- ..+
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg---GcDn~VkiW~~~~~~w~~e~~ 202 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG---GCDNLVKIWKFDSDSWKLERT 202 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc---CCccceeeeecCCcchhhhhh
Confidence 9999999986311111 111 24689999985 4 679998 8999999999987632 222
Q ss_pred eccccccccCCCCcceE--EEEcCCC----CeEeecc-----EEEEcCCCc---ceeeeccCCCce-EEEEecCCCEEEE
Q 000177 1633 LSDTSVNLTGRGHAYSQ--IHFSPSD----TMLLWNG-----ILWDRRNSV---PVHRFDQFTDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1633 L~d~s~~~~~~gh~~~v--VaFSPdG----~lLaSgg-----rLWDlrtgk---~I~kf~gh~~~V-sVaFSPdG~~LAS 1697 (1922)
| .+|...+ ++|.|.- .++++++ .||..+.-. ....+..+...+ .+.||+.|+.|+.
T Consensus 203 l---------~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 203 L---------EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAV 273 (299)
T ss_pred h---------hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEE
Confidence 3 4788887 9999975 5678887 788876321 112223345566 9999999999988
Q ss_pred Ee
Q 000177 1698 NS 1699 (1922)
Q Consensus 1698 GS 1699 (1922)
++
T Consensus 274 s~ 275 (299)
T KOG1332|consen 274 SG 275 (299)
T ss_pred ec
Confidence 76
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.40 E-value=4.3e-12 Score=151.49 Aligned_cols=195 Identities=22% Similarity=0.291 Sum_probs=157.5
Q ss_pred cccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccC-CCCeeEEE
Q 000177 1480 TYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSH-QAPVTLVQ 1558 (1922)
Q Consensus 1480 ~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gH-ss~VtsLq 1558 (1922)
+.||..+....|.+ ..-...+.+++|+ +.|+|+.++....+||+++..|.|.|..+.++....+|.-. ...|.-+
T Consensus 95 ~sgG~~~~Vkiwdl--~~kl~hr~lkdh~-stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll- 170 (673)
T KOG4378|consen 95 ISGGQSGCVKIWDL--RAKLIHRFLKDHQ-STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL- 170 (673)
T ss_pred eccCcCceeeehhh--HHHHHhhhccCCc-ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe-
Confidence 44555555555554 3455567789999 99999999999999999999999999999999887777533 4556688
Q ss_pred eeecCCCcEEEE--ecCCcEEEeccCCCCCCcceEecc-c----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCcee
Q 000177 1559 SHLSGETQLLLS--SSSQDVHLWNASSIAGGPMHSFEG-C----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLE 1630 (1922)
Q Consensus 1559 ~afSpDG~lLaS--SsDgtVkLWDl~t~~gk~l~tf~g-h----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i 1630 (1922)
.|++..+++++ |++|.|.|||+.. ..+++.+.. | ..|+|+|. ...|++. +.|+.|.+||++..+..
T Consensus 171 -~ys~skr~lL~~asd~G~VtlwDv~g--~sp~~~~~~~HsAP~~gicfspsne~l~vsV---G~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 171 -RYSPSKRFLLSIASDKGAVTLWDVQG--MSPIFHASEAHSAPCRGICFSPSNEALLVSV---GYDKKINIYDIRSQAST 244 (673)
T ss_pred -ecccccceeeEeeccCCeEEEEeccC--CCcccchhhhccCCcCcceecCCccceEEEe---cccceEEEeeccccccc
Confidence 78888887766 5799999999987 667777654 3 67999995 5677777 89999999999987777
Q ss_pred eeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC-cceeeeccCCCce-EEEEecCC
Q 000177 1631 AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAG 1692 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG 1692 (1922)
.++. ..|+-..++|+++|.+|+.+. ..||+|.. .++..+..|...| +++|-|.-
T Consensus 245 ~~l~--------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 245 DRLT--------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceee--------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 7665 357777799999999999877 89999964 5899999999888 99998764
No 147
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.40 E-value=5.6e-12 Score=148.78 Aligned_cols=226 Identities=16% Similarity=0.262 Sum_probs=160.9
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--------C--------CCceeeeccCCCCeeEEEeeecCC
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN--------S--------SSPLESCTSHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~--------t--------gk~l~tL~gHss~VtsLq~afSpD 1564 (1922)
..+|..|. ..|++|.|+|+|.+|++|+.+|.|.+|-.. + ....+.+.+|...|+.+ +|+|+
T Consensus 58 ~s~Ls~H~-~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL--~Ws~d 134 (434)
T KOG1009|consen 58 LSSLSRHT-RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDL--AWSPD 134 (434)
T ss_pred eecccCCc-ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhh--hccCC
Confidence 45677899 999999999999999999999999999865 2 12235668999999999 88999
Q ss_pred CcEEEEec-CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec-cccc
Q 000177 1565 TQLLLSSS-SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS-DTSV 1638 (1922)
Q Consensus 1565 G~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~-d~s~ 1638 (1922)
+.++++++ |.++++||+.. ++.+..+.+| ..++|.|-++++++- +.|...+++.+...+.++... +...
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~--G~l~~~~~dh~~yvqgvawDpl~qyv~s~---s~dr~~~~~~~~~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHA--GQLLAILDDHEHYVQGVAWDPLNQYVASK---SSDRHPEGFSAKLKQVIKRHGLDIMP 209 (434)
T ss_pred CceeeeeeccceEEEEEecc--ceeEeeccccccccceeecchhhhhhhhh---ccCcccceeeeeeeeeeeeeeeeEee
Confidence 99999965 99999999998 8888888775 679999999999987 777777777776555443332 0000
Q ss_pred c-----------ccCCCCcce----EEEEcCCCCeEeeccE--------------EEEcCC-CcceeeeccCCCce-EEE
Q 000177 1639 N-----------LTGRGHAYS----QIHFSPSDTMLLWNGI--------------LWDRRN-SVPVHRFDQFTDHG-GGG 1687 (1922)
Q Consensus 1639 ~-----------~~~~gh~~~----vVaFSPdG~lLaSggr--------------LWDlrt-gk~I~kf~gh~~~V-sVa 1687 (1922)
. ..++..+.. .++|+|+|.++++... +|+-.. .+|+..+....... .+.
T Consensus 210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr 289 (434)
T KOG1009|consen 210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVR 289 (434)
T ss_pred ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEE
Confidence 0 000111111 1889999999997663 333221 23444554444433 444
Q ss_pred Eec------------------CCCEEEEEeE----EEecCCCeEEEEEcCC---CceeEEEccCCCEEEEEE
Q 000177 1688 FHP------------------AGNEVIINSE----VWDLRKFRLLRSVPSL---DQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1688 FSP------------------dG~~LASGSe----IWDLrTgklL~tl~gH---~~~sVaFSPdG~~LaSgs 1734 (1922)
|+| -+..++++++ |||.++-.++..+.+. ..+.++|+++|.+++..+
T Consensus 290 ~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS 361 (434)
T KOG1009|consen 290 FSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSS 361 (434)
T ss_pred eeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEec
Confidence 443 2345666663 8898887777666533 338999999999999875
No 148
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.1e-11 Score=142.30 Aligned_cols=242 Identities=11% Similarity=0.153 Sum_probs=158.7
Q ss_pred eeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCC---cceE-ec-cc-eeEEEcCCCCEEEEeecCCCCC
Q 000177 1545 ESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGG---PMHS-FE-GC-KAARFSNSGNLFAALPTETSDR 1617 (1922)
Q Consensus 1545 ~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk---~l~t-f~-gh-~sVaFSPDG~~LaSgS~~S~Dg 1617 (1922)
.++++|...|+++ +|+.||++|+| +.|++|+||+++....+ +++. +. +| +.+.|.||.+-++... ....
T Consensus 80 ~~LKgH~~~vt~~--~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~--~~g~ 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDV--AFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSV--KRGN 155 (420)
T ss_pred hhhhccCCceeee--EEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEE--ccCC
Confidence 5678999999999 89999999999 56999999999862111 1111 11 23 7899999977555442 3557
Q ss_pred eEEEEECCC---CceeeeeccccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EE
Q 000177 1618 GILLYDIQT---YQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GG 1686 (1922)
Q Consensus 1618 tIrIWDlrT---gk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sV 1686 (1922)
++++|-+.. |.....+....-......|...+ +-...++.+|++++ .|||++ |+.+.+++...... ..
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 899997753 22211111000000113455555 44556778888887 899999 99988887665555 78
Q ss_pred EEecCCCEEEEEe-----EEEecC---CC-----eEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccc
Q 000177 1687 GFHPAGNEVIINS-----EVWDLR---KF-----RLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVK 1751 (1922)
Q Consensus 1687 aFSPdG~~LASGS-----eIWDLr---Tg-----klL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~k 1751 (1922)
+.||+|++|++++ ++|.+- .| ..+..++||.. ..++|||+.+.+++++++..|.+|..-
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd------ 308 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD------ 308 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc------
Confidence 9999999999999 689763 12 23456778887 799999999999999877766665321
Q ss_pred cCCcceEEEEecCCCceeeee-----ccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1752 HPLFAAFRTVDAINYSDIATI-----PVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1752 sp~~ssFrt~Da~dys~IaTi-----dvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
++---..+-..+.+. +....-..++.+|++..+|+.. .+.+.+|..
T Consensus 309 ------VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-------gs~l~~~~s 359 (420)
T KOG2096|consen 309 ------VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-------GSDLKVFAS 359 (420)
T ss_pred ------ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-------CCceEEEEc
Confidence 111001111111111 1122344899999999999762 355777753
No 149
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2.1e-11 Score=140.35 Aligned_cols=215 Identities=17% Similarity=0.277 Sum_probs=154.9
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEEecCCcEEEeccCCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLSSSSQDVHLWNASSI 1584 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaSSsDgtVkLWDl~t~ 1584 (1922)
.|. .++.+|+|.+ ...+++|+-||.|+.+|+++++. ..+..|..+|.|| .+++- +.+|++|+|++|++||.+.
T Consensus 52 ~~~-~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci--~~~~~~~~vIsgsWD~~ik~wD~R~- 125 (323)
T KOG1036|consen 52 KHG-APLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCI--EYSYEVGCVISGSWDKTIKFWDPRN- 125 (323)
T ss_pred ecC-CceeeeeccC-CceEEEeccCceEEEEEecCCcc-eeeccCCCceEEE--EeeccCCeEEEcccCccEEEEeccc-
Confidence 477 8999999987 56899999999999999988875 4566799999999 56654 4455557899999999986
Q ss_pred CCCcceEecccee-EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1585 AGGPMHSFEGCKA-ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1585 ~gk~l~tf~gh~s-VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
..+..++..... -+.+-.|+.|+.| +.|..+.+||+++-....+.. .....+...++++.|++.-++.++
T Consensus 126 -~~~~~~~d~~kkVy~~~v~g~~LvVg---~~~r~v~iyDLRn~~~~~q~r-----eS~lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 126 -KVVVGTFDQGKKVYCMDVSGNRLVVG---TSDRKVLIYDLRNLDEPFQRR-----ESSLKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred -cccccccccCceEEEEeccCCEEEEe---ecCceEEEEEcccccchhhhc-----cccceeEEEEEEEecCCCceEEEe
Confidence 444445443221 1233357888888 788999999999755433221 011246667789999776666555
Q ss_pred -------EEEEcCC--CcceeeeccCCC---------ce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-
Q 000177 1664 -------ILWDRRN--SVPVHRFDQFTD---------HG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ- 1718 (1922)
Q Consensus 1664 -------rLWDlrt--gk~I~kf~gh~~---------~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~- 1718 (1922)
-.+|.+. .+.-..|+.|.. +| +++|||-...++||+ .+||+.+.+.+..+.....
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~S 276 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETS 276 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCc
Confidence 2344331 122334444432 23 899999999999998 4999999998888887644
Q ss_pred -eeEEEccCCCEEEEEEc
Q 000177 1719 -TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1719 -~sVaFSPdG~~LaSgs~ 1735 (1922)
.+++|+.+|..|+.+..
T Consensus 277 I~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 277 ISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEEeccCCCeEEEEec
Confidence 79999999999998853
No 150
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.36 E-value=2e-09 Score=124.14 Aligned_cols=218 Identities=25% Similarity=0.433 Sum_probs=164.2
Q ss_pred eeEEecCCCCCCEEEEEE-cCCCC-EEEEEeC-CCcEEEEECCC-CCceeeeccCCCCeeEEEeeecCCCcEEEEec--C
Q 000177 1500 PWRTCRDDAGALLTCITF-LGDSS-HIAVGSH-TKELKIFDSNS-SSPLESCTSHQAPVTLVQSHLSGETQLLLSSS--S 1573 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaF-SPDG~-lLASGS~-DGtIkIWDl~t-gk~l~tL~gHss~VtsLq~afSpDG~lLaSSs--D 1573 (1922)
.+..+.++....+..+.+ ++++. +++..+. |+.+++|++.. ......+..|...|..+ .|+|++.+++++. |
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~ 177 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSL--AFSPDGKLLASGSSLD 177 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEE--EECCCCCEEEecCCCC
Confidence 455566633136777777 88887 5555444 99999999988 77888899999999999 8999998777753 9
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceee-eeccccccccCCCCcc
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEA-KLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~-tL~d~s~~~~~~gh~~ 1647 (1922)
+.+++|++.. +..+..+.+| .++.|+|++. .++++ +.|+.|++||...+..+. .+. +|..
T Consensus 178 ~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~d~~i~~wd~~~~~~~~~~~~---------~~~~ 243 (466)
T COG2319 178 GTIKLWDLRT--GKPLSTLAGHTDPVSSLAFSPDGGLLIASG---SSDGTIRLWDLSTGKLLRSTLS---------GHSD 243 (466)
T ss_pred CceEEEEcCC--CceEEeeccCCCceEEEEEcCCcceEEEEe---cCCCcEEEEECCCCcEEeeecC---------CCCc
Confidence 9999999987 6677777653 7899999988 55554 789999999999777766 343 3443
Q ss_pred e-EEEEcCCCCeEeecc-----EEEEcCCCcc-eeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1648 S-QIHFSPSDTMLLWNG-----ILWDRRNSVP-VHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1648 ~-vVaFSPdG~lLaSgg-----rLWDlrtgk~-I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
. ...|+|++.++++++ ++||++.... +..+.+|...+ ++.|+|++..+++++ .+||+.+........
T Consensus 244 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 244 SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred ceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 3 348999997777665 9999997664 55556777777 889999999888866 599998887666665
Q ss_pred --CCCc--eeEEEccCCCEEEEE
Q 000177 1715 --SLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1715 --gH~~--~sVaFSPdG~~LaSg 1733 (1922)
.|.. ..+.|++++..++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 324 LKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred ecccCCceEEEEECCCCCEEEEe
Confidence 6654 677774333555555
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.36 E-value=1.5e-11 Score=144.04 Aligned_cols=189 Identities=21% Similarity=0.331 Sum_probs=139.2
Q ss_pred CCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECC----------------CCCceeeeccCCCCeeEEEeeecC--CC
Q 000177 1506 DDAGALLTCITFLGDS--SHIAVGSHTKELKIFDSN----------------SSSPLESCTSHQAPVTLVQSHLSG--ET 1565 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG--~lLASGS~DGtIkIWDl~----------------tgk~l~tL~gHss~VtsLq~afSp--DG 1565 (1922)
+|. +.++.+.-++-| .+.++=+..|.|+||++. ..+++.++.+|...=+.| .||| .|
T Consensus 149 ~h~-g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~L--dWSp~~~g 225 (440)
T KOG0302|consen 149 PHY-GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGL--DWSPIKTG 225 (440)
T ss_pred ccc-cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceee--eccccccc
Confidence 577 778888777744 466667788999999984 235678899999999999 6676 44
Q ss_pred cEEEEec-CCcEEEeccCCCCCCc-ceEeccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1566 QLLLSSS-SQDVHLWNASSIAGGP-MHSFEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1566 ~lLaSSs-DgtVkLWDl~t~~gk~-l~tf~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
. |++|+ -+.|++|...++..+. ...|.+| -.++|||. ...|++| +.|++|+|||+|.+.....+.
T Consensus 226 ~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc---S~DgsIrIWDiRs~~~~~~~~---- 297 (440)
T KOG0302|consen 226 R-LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC---SCDGSIRIWDIRSGPKKAAVS---- 297 (440)
T ss_pred c-cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEee---ecCceEEEEEecCCCccceeE----
Confidence 4 34443 6789999988722111 1334455 56899996 4678888 889999999999984333332
Q ss_pred cccCCCCcceEEEEcCCCCeEeecc-----EEEEcCC---CcceeeeccCCCce-EEEEecCCCE-EEEEe-----EEEe
Q 000177 1639 NLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN---SVPVHRFDQFTDHG-GGGFHPAGNE-VIINS-----EVWD 1703 (1922)
Q Consensus 1639 ~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt---gk~I~kf~gh~~~V-sVaFSPdG~~-LASGS-----eIWD 1703 (1922)
...++..++++.|+..-.+|++++ +|||+|+ ++++..|+-|..+| ++.|||...- |++++ -|||
T Consensus 298 -~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 298 -TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred -eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 122455778899999999999988 9999995 57899999999999 9999997643 33333 3999
Q ss_pred cCC
Q 000177 1704 LRK 1706 (1922)
Q Consensus 1704 LrT 1706 (1922)
+..
T Consensus 377 lsv 379 (440)
T KOG0302|consen 377 LSV 379 (440)
T ss_pred eec
Confidence 863
No 152
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3e-11 Score=150.58 Aligned_cols=193 Identities=14% Similarity=0.107 Sum_probs=130.9
Q ss_pred CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec----CCcEEEeccCCCCCCcceEeccc-eeEEEcCC
Q 000177 1529 HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS----SQDVHLWNASSIAGGPMHSFEGC-KAARFSNS 1603 (1922)
Q Consensus 1529 ~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs----DgtVkLWDl~t~~gk~l~tf~gh-~sVaFSPD 1603 (1922)
.+..|.|||.+... ...+..|...|.+. .|||||+.|+..+ +..|++||+.+...+.+..+.++ ..++|+||
T Consensus 182 ~~~~i~i~d~dg~~-~~~lt~~~~~v~~p--~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD 258 (429)
T PRK01742 182 QPYEVRVADYDGFN-QFIVNRSSQPLMSP--AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD 258 (429)
T ss_pred ceEEEEEECCCCCC-ceEeccCCCccccc--eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence 35789999986554 56677788889999 8899999888742 24699999987222234445554 57899999
Q ss_pred CCEEEEeecCCCCCeEE--EEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCC-cce
Q 000177 1604 GNLFAALPTETSDRGIL--LYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNS-VPV 1674 (1922)
Q Consensus 1604 G~~LaSgS~~S~DgtIr--IWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtg-k~I 1674 (1922)
|++|+.++ ..++.+. +||+.++.. ..+. ..........|+|+|+.|+..+ .||++... ...
T Consensus 259 G~~La~~~--~~~g~~~Iy~~d~~~~~~-~~lt-------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 259 GSRLAFAS--SKDGVLNIYVMGANGGTP-SQLT-------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred CCEEEEEE--ecCCcEEEEEEECCCCCe-Eeec-------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 99988863 3456544 556666654 3333 0122233489999999776432 78887542 223
Q ss_pred eeeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEcCCCceeEEEccCCCEEEEEEcc
Q 000177 1675 HRFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1675 ~kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~~ 1736 (1922)
..+ .+.. .+..|+|+|++|+..+ -+||+.+++.......+....+.|+|+|++|+.+..+
T Consensus 329 ~~l-~~~~-~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 329 SLV-GGRG-YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred EEe-cCCC-CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcC
Confidence 333 3332 4578999999998876 2789988875433333344688999999999988543
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2.3e-10 Score=141.77 Aligned_cols=237 Identities=8% Similarity=0.062 Sum_probs=168.6
Q ss_pred cccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC
Q 000177 1486 RNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1486 g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG 1565 (1922)
+....|+. -..+-...++.+|.+..|-.++|+ ++..|++.+.+|+|.-||+.+++....+....+.|+++ +.+|.+
T Consensus 47 g~IEiwN~-~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsi--ai~p~~ 122 (691)
T KOG2048|consen 47 GNIEIWNL-SNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSI--AINPEN 122 (691)
T ss_pred CcEEEEcc-CCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEE--EeCCcc
Confidence 34444444 224445677889888899999999 56689999999999999999999999999999999999 888888
Q ss_pred cEEEE-ecCCcEEEeccCCCCCCcce--Eec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1566 QLLLS-SSSQDVHLWNASSIAGGPMH--SFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1566 ~lLaS-SsDgtVkLWDl~t~~gk~l~--tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
..++. |.||.+..++... ++..+ .|. -+.++.|+|++..+++| +.||.|++||..+++.+....-...
T Consensus 123 ~~l~IgcddGvl~~~s~~p--~~I~~~r~l~rq~sRvLslsw~~~~~~i~~G---s~Dg~Iriwd~~~~~t~~~~~~~~d 197 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGP--DKITYKRSLMRQKSRVLSLSWNPTGTKIAGG---SIDGVIRIWDVKSGQTLHIITMQLD 197 (691)
T ss_pred ceEEeecCCceEEEEecCC--ceEEEEeecccccceEEEEEecCCccEEEec---ccCceEEEEEcCCCceEEEeeeccc
Confidence 87777 4799777777765 33221 221 14789999999999999 8999999999999988773320000
Q ss_pred cc-cCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe---EEEecC--CC
Q 000177 1639 NL-TGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS---EVWDLR--KF 1707 (1922)
Q Consensus 1639 ~~-~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS---eIWDLr--Tg 1707 (1922)
.. ....--++.+.|-.++.++..++ .+||...+..+..+..|...+ +++..+++.++.+++ ++..+. +.
T Consensus 198 ~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 198 RLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred ccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 00 00111233356665665555333 999999999999999999888 999999999999998 343332 21
Q ss_pred e------EEEEEcCCCceeEEEccCCCEEEEE
Q 000177 1708 R------LLRSVPSLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1708 k------lL~tl~gH~~~sVaFSPdG~~LaSg 1733 (1922)
+ .-+.+++|+..+++..++ .++++
T Consensus 278 ~~~wv~~~~r~~h~hdvrs~av~~~--~l~sg 307 (691)
T KOG2048|consen 278 KSEWVINSRRDLHAHDVRSMAVIEN--ALISG 307 (691)
T ss_pred ccceeeeccccCCcccceeeeeecc--eEEec
Confidence 1 112344566666666554 44444
No 154
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.35 E-value=5e-10 Score=134.19 Aligned_cols=252 Identities=12% Similarity=0.146 Sum_probs=157.6
Q ss_pred EEEeCCCcEEEEECCC-CC--ceeeeccCCCCeeEEEeeecCCCcEEEEe--cCCcEEEeccCCCCCCc--ceEec---c
Q 000177 1525 AVGSHTKELKIFDSNS-SS--PLESCTSHQAPVTLVQSHLSGETQLLLSS--SSQDVHLWNASSIAGGP--MHSFE---G 1594 (1922)
Q Consensus 1525 ASGS~DGtIkIWDl~t-gk--~l~tL~gHss~VtsLq~afSpDG~lLaSS--sDgtVkLWDl~t~~gk~--l~tf~---g 1594 (1922)
++...++.|.+|++.+ ++ .+.++. +.+....+ .++|++++|+.+ .++.|.+|++.. .+.. +.... .
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l--~~spd~~~lyv~~~~~~~i~~~~~~~-~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPM--VISPDKRHLYVGVRPEFRVLSYRIAD-DGALTFAAESPLPGS 81 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccE--EECCCCCEEEEEECCCCcEEEEEECC-CCceEEeeeecCCCC
Confidence 3446789999999964 33 334443 34556777 789999988664 488899999963 1322 22221 1
Q ss_pred ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCC-cceEEEEcCCCCeEeecc------EEE
Q 000177 1595 CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGH-AYSQIHFSPSDTMLLWNG------ILW 1666 (1922)
Q Consensus 1595 h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh-~~~vVaFSPdG~lLaSgg------rLW 1666 (1922)
...+.|+|+++++++++ ..++.|.+||+.+.. ...... ...+. ....++|+|+|+++++.+ .+|
T Consensus 82 p~~i~~~~~g~~l~v~~--~~~~~v~v~~~~~~g~~~~~~~------~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 82 PTHISTDHQGRFLFSAS--YNANCVSVSPLDKDGIPVAPIQ------IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred ceEEEECCCCCEEEEEE--cCCCeEEEEEECCCCCCCCcee------eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence 26799999999988873 347899999997432 211111 00011 122378999999887544 899
Q ss_pred EcCCCccee-------eeccCCCceEEEEecCCCEEEEEe------EEEecCC--C--eEEEEEcCCCc--------eeE
Q 000177 1667 DRRNSVPVH-------RFDQFTDHGGGGFHPAGNEVIINS------EVWDLRK--F--RLLRSVPSLDQ--------TTI 1721 (1922)
Q Consensus 1667 Dlrtgk~I~-------kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrT--g--klL~tl~gH~~--------~sV 1721 (1922)
|+.+...+. .+.....+..+.|+|+|+++++.. .+|++.. + +.+.++..+.. ..+
T Consensus 154 d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 154 TLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI 233 (330)
T ss_pred EECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence 998633221 122223334899999999998776 3899873 3 44555542211 258
Q ss_pred EEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC----CCceeeeeccCCceEEEEEcCCCceEEEEecCC
Q 000177 1722 TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI----NYSDIATIPVDRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1722 aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~----dys~IaTidvkr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
.|+|+|+++|++.+.. ..+.+|+.. ....+..+.......++.++|+|+++.+...
T Consensus 234 ~~~pdg~~lyv~~~~~------------------~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~-- 293 (330)
T PRK11028 234 HITPDGRHLYACDRTA------------------SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ-- 293 (330)
T ss_pred EECCCCCEEEEecCCC------------------CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc--
Confidence 8999999999983211 123333321 1223334433344567899999999998742
Q ss_pred CCCccceEEEEEec
Q 000177 1798 QEDMFSSARIYEIG 1811 (1922)
Q Consensus 1798 s~d~dSsVRLyEVG 1811 (1922)
.+..+.+|++.
T Consensus 294 ---~~~~v~v~~~~ 304 (330)
T PRK11028 294 ---KSHHISVYEID 304 (330)
T ss_pred ---cCCcEEEEEEc
Confidence 23678888763
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.34 E-value=7.6e-11 Score=145.92 Aligned_cols=262 Identities=13% Similarity=0.184 Sum_probs=182.4
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--cee-----eeccCCCCeeEEEeeecCCCcEEEE-ecCCc
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLE-----SCTSHQAPVTLVQSHLSGETQLLLS-SSSQD 1575 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~-----tL~gHss~VtsLq~afSpDG~lLaS-SsDgt 1575 (1922)
+.||. +.|+++.|+|.+..|+++|.|.++.||...+.. -+. ...|....-+.. .|+|++..+++ |.-|.
T Consensus 263 l~GHe-DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~--lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 263 LMGHE-DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGG--LWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hcCcc-cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeE--EEcCCCCEEEEecccCc
Confidence 45999 999999999999999999999999999876542 222 223344557777 78999998888 66999
Q ss_pred EEEeccCCC-CCCcceE----eccceeEEEcCCCCEEEEeecCCCCCeEEEEECC--------------------CC---
Q 000177 1576 VHLWNASSI-AGGPMHS----FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQ--------------------TY--- 1627 (1922)
Q Consensus 1576 VkLWDl~t~-~gk~l~t----f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr--------------------Tg--- 1627 (1922)
.++|-.... ...+... +.+++.++|+|.|.++++. +.|.+-|+|--- .-
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv---s~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV---SLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEe---ccccceeeecccccccceeeecccccccccceeeehc
Confidence 999983320 0111222 3345899999999999999 767766665321 00
Q ss_pred ------------ceeeeecc------------------------------------------------------------
Q 000177 1628 ------------QLEAKLSD------------------------------------------------------------ 1635 (1922)
Q Consensus 1628 ------------k~i~tL~d------------------------------------------------------------ 1635 (1922)
+.+..|..
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 00001100
Q ss_pred ------cc--------------ccccCCCCcceEEEEcCCCCeEeecc----------EEEEcCCCcceeeeccCCCce-
Q 000177 1636 ------TS--------------VNLTGRGHAYSQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFDQFTDHG- 1684 (1922)
Q Consensus 1636 ------~s--------------~~~~~~gh~~~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~gh~~~V- 1684 (1922)
|. -...+||+.+.+++.+|++++++++. +||+..+...++.+.+|.-.|
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVT 576 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEE
Confidence 00 01244666777799999999999887 899999998888999999888
Q ss_pred EEEEecCCCEEEEEeE-----EEecCCCe----EEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccC
Q 000177 1685 GGGFHPAGNEVIINSE-----VWDLRKFR----LLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHP 1753 (1922)
Q Consensus 1685 sVaFSPdG~~LASGSe-----IWDLrTgk----lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp 1753 (1922)
.+.|||||++|++.|+ +|...... ....++.|.. +...|+|++.++++++++....+|.... .+
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~-~~---- 651 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD-LR---- 651 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC-ch----
Confidence 9999999999999994 77664321 1233567776 8999999999999998777555543211 00
Q ss_pred CcceEEEEecCCC-ceeeeeccCCceEEEEEcCC
Q 000177 1754 LFAAFRTVDAINY-SDIATIPVDRCVLDFATERT 1786 (1922)
Q Consensus 1754 ~~ssFrt~Da~dy-s~IaTidvkr~I~dLa~SPd 1786 (1922)
.+| ..++.+.....|..+++.|.
T Consensus 652 ----------d~~i~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 652 ----------DKYISRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred ----------hhhhhhhchhccCCceeeEEeecc
Confidence 011 12245566677888888763
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.33 E-value=4.7e-11 Score=137.64 Aligned_cols=211 Identities=16% Similarity=0.255 Sum_probs=161.9
Q ss_pred CCEEEEEEc-------CCCCEEEEEeCCCcEEEEECCCCCceeeec--cCCCCe---eEEEeeecCCCcEEEEecCCcEE
Q 000177 1510 ALLTCITFL-------GDSSHIAVGSHTKELKIFDSNSSSPLESCT--SHQAPV---TLVQSHLSGETQLLLSSSSQDVH 1577 (1922)
Q Consensus 1510 ~~Vt~LaFS-------PDG~lLASGS~DGtIkIWDl~tgk~l~tL~--gHss~V---tsLq~afSpDG~lLaSSsDgtVk 1577 (1922)
..|...+|- |+..++++.+.+.-|++||..+|+...++. .|...+ .++ .|+|||..|.+|....|+
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL--~Fs~DGeqlfaGykrcir 182 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSL--QFSPDGEQLFAGYKRCIR 182 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeE--EecCCCCeEeecccceEE
Confidence 446666664 677899999999999999999999887774 455544 466 899999999999999999
Q ss_pred EeccCCCCCC-cce-Ee-------cc-ceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1578 LWNASSIAGG-PMH-SF-------EG-CKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1578 LWDl~t~~gk-~l~-tf-------~g-h~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
+||+..+... +++ ++ .+ +.+++|+|. .+.++.+ +.-.++-||.-..+.++..+- +|.
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~g---sY~q~~giy~~~~~~pl~llg---------gh~ 250 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVG---SYGQRVGIYNDDGRRPLQLLG---------GHG 250 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeee---cccceeeeEecCCCCceeeec---------ccC
Confidence 9999432111 111 11 22 378999994 5578887 677888888888888877764 555
Q ss_pred ceE--EEEcCCCCeEeecc------EEEEcCCC-cceeeeccCCCce--EE--EEecCCCEEEEEe-----EEEecCC-C
Q 000177 1647 YSQ--IHFSPSDTMLLWNG------ILWDRRNS-VPVHRFDQFTDHG--GG--GFHPAGNEVIINS-----EVWDLRK-F 1707 (1922)
Q Consensus 1647 ~~v--VaFSPdG~lLaSgg------rLWDlrtg-k~I~kf~gh~~~V--sV--aFSPdG~~LASGS-----eIWDLrT-g 1707 (1922)
..+ +.|.++|+.|+++. ..||+|.. .++..+..|.... .+ ...|+|++|++|+ ++||+++ +
T Consensus 251 gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 251 GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred CCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 555 99999999999998 69999964 5888888876532 44 4568999999996 6999998 6
Q ss_pred eEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1708 RLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1708 klL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
..+..+..+.. +.|++||-=.++++++
T Consensus 331 n~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 331 NEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred CcccccccccccccceecCcccceeeecc
Confidence 76777776665 7999999977777764
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.33 E-value=3.4e-11 Score=147.78 Aligned_cols=221 Identities=12% Similarity=0.172 Sum_probs=155.2
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee--eccCCCCeeEEEeeecCCCcEEEE-e-cCCcEE
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGETQLLLS-S-SSQDVH 1577 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpDG~lLaS-S-sDgtVk 1577 (1922)
+....|. ..|..+.|-|....|++.+.|.+|++||+.++.+... +.||...|.++ +|.+.+..+++ | .||.|.
T Consensus 94 k~~~aH~-nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~--cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 94 KKPLAHK-NAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSE--CFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred ccccccc-ceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchh--hhccCCCcceeeccCCCcEE
Confidence 3345699 9999999999777999999999999999999988776 89999999999 78887765544 4 599999
Q ss_pred EeccCCCCC------------------CcceEe-------cc----cee---EEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1578 LWNASSIAG------------------GPMHSF-------EG----CKA---ARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1578 LWDl~t~~g------------------k~l~tf-------~g----h~s---VaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
|||++.... .+...+ .. +.+ +.+..|...|++++ ..|+.|+|||++
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSag--a~D~~iKVWDLR 248 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAG--AADSTIKVWDLR 248 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeecc--CCCcceEEEeec
Confidence 999975110 000000 00 122 56777889999982 359999999999
Q ss_pred CCceeeeeccccccc----cCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC--cceeeeccCCCc---eEEEEecC
Q 000177 1626 TYQLEAKLSDTSVNL----TGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS--VPVHRFDQFTDH---GGGGFHPA 1691 (1922)
Q Consensus 1626 Tgk~i~tL~d~s~~~----~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg--k~I~kf~gh~~~---VsVaFSPd 1691 (1922)
+..+.....+..... ....+....+.....|.++++.. ++|++.+- .++..|.++... +.-..+|+
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd 328 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD 328 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence 877665543211110 01122333366667777766433 89998853 366666665432 25578999
Q ss_pred CCEEEEEe-----EEEecCCCe-EEEEEcCCCc--eeEEEccCC
Q 000177 1692 GNEVIINS-----EVWDLRKFR-LLRSVPSLDQ--TTITFNARG 1727 (1922)
Q Consensus 1692 G~~LASGS-----eIWDLrTgk-lL~tl~gH~~--~sVaFSPdG 1727 (1922)
+.+|++|+ -+|.+.+-+ ....+.||.. ++|.|.|.-
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 99999999 399988743 4555668877 789998743
No 158
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=9.5e-12 Score=151.44 Aligned_cols=226 Identities=14% Similarity=0.198 Sum_probs=166.4
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------CCceeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS--------SSPLESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t--------gk~l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
+.+..+++.|. +.|+.++|.|....|++++.||+|++|+++. -+++.+|.+|.++|.|+ ..+++++.+.
T Consensus 284 w~ik~tl~s~~-d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v--~v~~n~~~~y 360 (577)
T KOG0642|consen 284 WNIKFTLRSHD-DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCV--VVPSNGEHCY 360 (577)
T ss_pred cceeeeeecch-hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEE--EecCCceEEE
Confidence 34445888999 9999999999999999999999999999942 24577999999999999 8899999999
Q ss_pred Eec-CCcEEEeccCCCCCC---------cceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecc
Q 000177 1570 SSS-SQDVHLWNASSIAGG---------PMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1570 SSs-DgtVkLWDl~t~~gk---------~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
+++ ||+|+.|++.. ... ...++.|| |.+++|.....|+++ +.||++++|+...... .+|..
T Consensus 361 sgg~Dg~I~~w~~p~-n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc---s~DgTvr~w~~~~~~~-~~f~~ 435 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPP-NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC---SSDGTVRLWEPTEESP-CTFGE 435 (577)
T ss_pred eeccCceeeeeccCC-CCCcccccCcchhccceeccccceeeeeecccccceeee---cCCceEEeeccCCcCc-cccCC
Confidence 965 99999997652 111 22345555 678899988889999 8999999999886655 33431
Q ss_pred ccccccCCCCcceE-EEEcCCCC-eEeecc-----EEEEcCCCcceeeeccC--------CCceEEEEecCCCEEEEEe-
Q 000177 1636 TSVNLTGRGHAYSQ-IHFSPSDT-MLLWNG-----ILWDRRNSVPVHRFDQF--------TDHGGGGFHPAGNEVIINS- 1699 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~v-VaFSPdG~-lLaSgg-----rLWDlrtgk~I~kf~gh--------~~~VsVaFSPdG~~LASGS- 1699 (1922)
...|..+. +.|-.... +.++.. .++|...+..+..|... .....+.++|++.+.+++.
T Consensus 436 ------~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he 509 (577)
T KOG0642|consen 436 ------PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE 509 (577)
T ss_pred ------ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc
Confidence 12233332 44433331 222222 45555555544444322 1122789999999998888
Q ss_pred ----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1700 ----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1700 ----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+++|..++++++....|.. +++++-|+|.+++++..+.
T Consensus 510 d~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~ 553 (577)
T KOG0642|consen 510 DRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG 553 (577)
T ss_pred CCceecccccccccchheeeccceecceeecCCCceEEeecCCc
Confidence 4899999999999888876 8999999999999996544
No 159
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=7.1e-11 Score=147.24 Aligned_cols=204 Identities=15% Similarity=0.132 Sum_probs=139.9
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCc--eeeeccCCCCeeEEEeeecCCCcEEEEe--cC
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHT---KELKIFDSNSSSP--LESCTSHQAPVTLVQSHLSGETQLLLSS--SS 1573 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~tgk~--l~tL~gHss~VtsLq~afSpDG~lLaSS--sD 1573 (1922)
.+.+..|. ..+.+.+|||||++|+..+.+ ..|++||+.+++. +..+.+|. ..+ .|+|||+.|+.+ .+
T Consensus 196 ~~~lt~~~-~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~--~wSPDG~~La~~~~~~ 269 (429)
T PRK01742 196 QFIVNRSS-QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAP--AFSPDGSRLAFASSKD 269 (429)
T ss_pred ceEeccCC-CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---Cce--eECCCCCEEEEEEecC
Confidence 45567787 889999999999999988754 3699999988764 33344443 345 889999988763 47
Q ss_pred CcEEEe--ccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCCc
Q 000177 1574 QDVHLW--NASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1574 gtVkLW--Dl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh~ 1646 (1922)
+.+.|| |+.+ +. +..+.. +....|+|||+.|+.++ ..++...||++.... ....+. +.
T Consensus 270 g~~~Iy~~d~~~--~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s--~~~g~~~I~~~~~~~~~~~~l~----------~~ 334 (429)
T PRK01742 270 GVLNIYVMGANG--GT-PSQLTSGAGNNTEPSWSPDGQSILFTS--DRSGSPQVYRMSASGGGASLVG----------GR 334 (429)
T ss_pred CcEEEEEEECCC--CC-eEeeccCCCCcCCEEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEec----------CC
Confidence 766555 5544 33 344433 36799999999888763 345677888765322 122221 11
Q ss_pred ceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEec--CCCeEEEEEcC
Q 000177 1647 YSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDL--RKFRLLRSVPS 1715 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDL--rTgklL~tl~g 1715 (1922)
.....|+|+|++|+..+ .+||+.+++.......+ ...++.|+|||++|+.++ .+|.+ .+++.++++.+
T Consensus 335 ~~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~-~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 335 GYSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF-LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CCCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC-CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 12368999999987655 67999988754322222 223678999999999887 36665 35788888887
Q ss_pred CCc--eeEEEccC
Q 000177 1716 LDQ--TTITFNAR 1726 (1922)
Q Consensus 1716 H~~--~sVaFSPd 1726 (1922)
|.. ..++|||-
T Consensus 414 ~~g~~~~p~wsp~ 426 (429)
T PRK01742 414 SDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCcccCCC
Confidence 765 67889884
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=3.7e-11 Score=143.24 Aligned_cols=197 Identities=17% Similarity=0.263 Sum_probs=142.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCc-------------------ee--eeccCCCCeeEEEeeecCCC-cEEEEe-cCCcE
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSP-------------------LE--SCTSHQAPVTLVQSHLSGET-QLLLSS-SSQDV 1576 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~-------------------l~--tL~gHss~VtsLq~afSpDG-~lLaSS-sDgtV 1576 (1922)
-|+++|.|+.|..|.|||++--.. .+ .-.+|+..|..+ +|+..- ++|+++ .|.+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~L--s~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLAL--SWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHH--HhccccceeEEecCCCceE
Confidence 467999999999999999852110 01 124799999999 555554 466664 49999
Q ss_pred EEeccCCCCCCcceEecc----ceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCc---eeeeeccccccccCCCCcce
Q 000177 1577 HLWNASSIAGGPMHSFEG----CKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQ---LEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~g----h~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk---~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
++||+.+ ++|..++.. +.++.|+|. ..++++| +.|++|.++|.|... ....+ ...+.
T Consensus 269 ~lWD~~~--g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG---s~D~~V~l~D~R~~~~s~~~wk~----------~g~VE 333 (463)
T KOG0270|consen 269 KLWDVDT--GKPKSSITHHGKKVQTLEWHPYEPSVLLSG---SYDGTVALKDCRDPSNSGKEWKF----------DGEVE 333 (463)
T ss_pred EEEEcCC--CCcceehhhcCCceeEEEecCCCceEEEec---cccceEEeeeccCccccCceEEe----------ccceE
Confidence 9999999 899888874 488999995 6788898 999999999999421 11222 23455
Q ss_pred EEEEcCCCCeEeecc------EEEEcCCC-cceeeeccCCCce-EEEEecCCC-EEEEEe-----EEEecCCCeEEEEEc
Q 000177 1649 QIHFSPSDTMLLWNG------ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAGN-EVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg------rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG~-~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
.++|+|.....+-++ +-+|+|+. +++.+++.|.+.| ++++++.-. ++++++ ++|++..-.. +.+.
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~ 412 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVK 412 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccc
Confidence 599999876554333 88899965 8999999999999 889887654 566666 5999864332 1122
Q ss_pred CCC-----ceeEEEccCCCEEEEEE
Q 000177 1715 SLD-----QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1715 gH~-----~~sVaFSPdG~~LaSgs 1734 (1922)
.|. -.|.++.|+-.++++..
T Consensus 413 ~~~~~~~rl~c~~~~~~~a~~la~G 437 (463)
T KOG0270|consen 413 EHSFKLGRLHCFALDPDVAFTLAFG 437 (463)
T ss_pred cccccccceeecccCCCcceEEEec
Confidence 222 26888889887777764
No 161
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=1.6e-11 Score=149.52 Aligned_cols=212 Identities=16% Similarity=0.186 Sum_probs=156.6
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------CceeeeccCCCCeeEEEeeecCCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS----------SPLESCTSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg----------k~l~tL~gHss~VtsLq~afSpDG 1565 (1922)
..+.|+.+|++|. ++|.|+++++++.++++|+.||+|+.|++... ....++.||++.|+.+ .+|+..
T Consensus 332 ~~~epi~tfraH~-gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l--~~s~~~ 408 (577)
T KOG0642|consen 332 KDVEPILTFRAHE-GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLL--ALSSTK 408 (577)
T ss_pred cceeeeEEEeccc-CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeee--eecccc
Confidence 4678999999999 99999999999999999999999999976421 2345779999999999 778777
Q ss_pred cEEEE-ecCCcEEEeccCCCCCCcceEecc------ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeecccc
Q 000177 1566 QLLLS-SSSQDVHLWNASSIAGGPMHSFEG------CKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTS 1637 (1922)
Q Consensus 1566 ~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g------h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s 1637 (1922)
..|++ ++||+|++|+... ..+ .+|.. +.++.|-... .+.++. ..-+.--++|+.+++.+..+....
T Consensus 409 ~~Llscs~DgTvr~w~~~~--~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s---~~~~~~~~~~~ev~s~~~~~~s~~ 482 (577)
T KOG0642|consen 409 DRLLSCSSDGTVRLWEPTE--ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLAS---FRFGYTSIDDMEVVSDLLIFESSA 482 (577)
T ss_pred cceeeecCCceEEeeccCC--cCc-cccCCccccCCcceEeeccchhHhhhhh---cccccccchhhhhhhheeeccccC
Confidence 77777 5699999999976 333 44432 3556654432 222222 223444566777777766665222
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCC
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT 1706 (1922)
..........+.+.++|.+.+.+++. +++|..++++++....|...+ ++++.|+|.+|++++ .+|.+..
T Consensus 483 ~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 483 SPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred CCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 22111223455589999999988887 899999999999999999888 999999999999999 3888876
Q ss_pred CeEEEEEcCC
Q 000177 1707 FRLLRSVPSL 1716 (1922)
Q Consensus 1707 gklL~tl~gH 1716 (1922)
..++.....|
T Consensus 563 k~~~~es~~~ 572 (577)
T KOG0642|consen 563 KTCVLESTAH 572 (577)
T ss_pred hheeeccccc
Confidence 6655544433
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.30 E-value=2.5e-11 Score=142.08 Aligned_cols=163 Identities=17% Similarity=0.282 Sum_probs=123.8
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCce---eeeccCCCCeeEEEeeecCCCc-EEE
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPL---ESCTSHQAPVTLVQSHLSGETQ-LLL 1569 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l---~tL~gHss~VtsLq~afSpDG~-lLa 1569 (1922)
++.++|+.++.+|. +.=+.++||| ....|+||..-+.|++|...+|... .-|.+|+..|-.| .|||... .++
T Consensus 198 ~s~~~Pl~t~~ghk-~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDL--qWSptE~~vfa 274 (440)
T KOG0302|consen 198 DSEFRPLFTFNGHK-GEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDL--QWSPTEDGVFA 274 (440)
T ss_pred ccccCceEEecccC-ccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhh--ccCCccCceEE
Confidence 37889999999999 8889999999 2235899999999999999887643 3567899999999 5566543 555
Q ss_pred E-ecCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC---ceeeeecccccccc
Q 000177 1570 S-SSSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTY---QLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1570 S-SsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg---k~i~tL~d~s~~~~ 1641 (1922)
+ |.|++|+|||++....+.....+. ++-+.|+..-.+|++| +.||+++|||+++. +.+.+|+
T Consensus 275 ScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG---~DdGt~~iwDLR~~~~~~pVA~fk------- 344 (440)
T KOG0302|consen 275 SCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASG---GDDGTLSIWDLRQFKSGQPVATFK------- 344 (440)
T ss_pred eeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeec---CCCceEEEEEhhhccCCCcceeEE-------
Confidence 5 459999999999832222222344 4789999987789998 89999999999864 4445554
Q ss_pred CCCCcceEEEEcCCCCe-Eeecc-----EEEEcCC
Q 000177 1642 GRGHAYSQIHFSPSDTM-LLWNG-----ILWDRRN 1670 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPdG~l-LaSgg-----rLWDlrt 1670 (1922)
.|.+++.++.|+|...- |+++| .|||+..
T Consensus 345 ~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 35666777999997644 44444 8999874
No 163
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=4.7e-11 Score=142.36 Aligned_cols=193 Identities=19% Similarity=0.260 Sum_probs=137.9
Q ss_pred cCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEEec-CCcEEEecc
Q 000177 1505 RDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLSSS-SQDVHLWNA 1581 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaSSs-DgtVkLWDl 1581 (1922)
.+|+ +.|.+++|+.+ .+.||+||.|.+|++||+.++++..++..|...|.++ .|+|. ..+|++|+ |++|.|.|.
T Consensus 240 ~gHT-davl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l--~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 240 SGHT-DAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTL--EWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ccch-HHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEE--EecCCCceEEEeccccceEEeeec
Confidence 3698 89999999974 4589999999999999999999999999999999999 55554 56777765 999999999
Q ss_pred CCCC-CCcceEecc-ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCC-ceeeeeccccccccCCCCcceEEEEcCCCC
Q 000177 1582 SSIA-GGPMHSFEG-CKAARFSNSG-NLFAALPTETSDRGILLYDIQTY-QLEAKLSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1582 ~t~~-gk~l~tf~g-h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
+... .....+|.+ +-.+.|.|.. ..|+++ +.||+|+-+|+|.. +++.++. .|...+..+++++.-.
T Consensus 317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~---tddG~v~~~D~R~~~~~vwt~~-------AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS---TDDGTVYYFDIRNPGKPVWTLK-------AHDDEISGLSVNIQTP 386 (463)
T ss_pred cCccccCceEEeccceEEEEecCCCceeEEEe---cCCceEEeeecCCCCCceeEEE-------eccCCcceEEecCCCC
Confidence 8521 122345544 5789999964 455665 88999999999975 7777775 1233344488888765
Q ss_pred e-Eeecc-----EEEEcCCCcc--eeeeccCCCce-EEEEecCCC-EEEEEe-----EEEecCCCeEE
Q 000177 1658 M-LLWNG-----ILWDRRNSVP--VHRFDQFTDHG-GGGFHPAGN-EVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1658 l-LaSgg-----rLWDlrtgk~--I~kf~gh~~~V-sVaFSPdG~-~LASGS-----eIWDLrTgklL 1710 (1922)
. +++++ ++|++....+ ++.-.-.-+.. |.++.|+-. +++.|+ +|||+-+...+
T Consensus 387 ~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 387 GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 5 44555 9999885443 22111111112 666777654 445555 59999876544
No 164
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.29 E-value=1.1e-09 Score=131.08 Aligned_cols=227 Identities=14% Similarity=0.188 Sum_probs=145.8
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCCc--eeeeccCCCCeeEEEeeecCCCcEEEEec--
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGS-HTKELKIFDSN-SSSP--LESCTSHQAPVTLVQSHLSGETQLLLSSS-- 1572 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS-~DGtIkIWDl~-tgk~--l~tL~gHss~VtsLq~afSpDG~lLaSSs-- 1572 (1922)
+.++++. +. +....++|+|++++|++++ .++.|.+|+++ +++. ..... .......+ .|+|++++|+++.
T Consensus 26 ~~~~~~~-~~-~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i--~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 26 TLLQVVD-VP-GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHI--STDHQGRFLFSASYN 100 (330)
T ss_pred eeeeEEe-cC-CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEE--EECCCCCEEEEEEcC
Confidence 3455554 33 4567899999999987765 58899999997 3332 12221 22345667 8899999888753
Q ss_pred CCcEEEeccCCCCC---CcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1573 SQDVHLWNASSIAG---GPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1573 DgtVkLWDl~t~~g---k~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++.|.+|++.+. + ..+..+.+ .+.++|+|++++++++. ..++.|.+||+.+...+......... ...+..
T Consensus 101 ~~~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~--~~~~~v~v~d~~~~g~l~~~~~~~~~-~~~g~~ 176 (330)
T PRK11028 101 ANCVSVSPLDKD-GIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC--LKEDRIRLFTLSDDGHLVAQEPAEVT-TVEGAG 176 (330)
T ss_pred CCeEEEEEECCC-CCCCCceeeccCCCcccEeEeCCCCCEEEEee--CCCCEEEEEEECCCCcccccCCCcee-cCCCCC
Confidence 889999999741 2 22333332 36788999999887662 56799999999874332210000000 001222
Q ss_pred ceEEEEcCCCCeEeecc------EEEEcCC--Cc--ceeeeccCCC------c-eEEEEecCCCEEEEEe------EEEe
Q 000177 1647 YSQIHFSPSDTMLLWNG------ILWDRRN--SV--PVHRFDQFTD------H-GGGGFHPAGNEVIINS------EVWD 1703 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg------rLWDlrt--gk--~I~kf~gh~~------~-VsVaFSPdG~~LASGS------eIWD 1703 (1922)
...+.|+|+|+++++.. .+||+.. ++ .+.++..... + ..+.|+|+|++++++. .+|+
T Consensus 177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 33489999999887543 8899973 32 3444432211 1 2588999999999876 3888
Q ss_pred cCCC----eEEEEEcCC-CceeEEEccCCCEEEEEE
Q 000177 1704 LRKF----RLLRSVPSL-DQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1704 LrTg----klL~tl~gH-~~~sVaFSPdG~~LaSgs 1734 (1922)
+.+. +.+..++.. ..+.+.|+|+|++|+++.
T Consensus 257 i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 257 VSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE
Confidence 8543 234444322 226899999999999984
No 165
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.29 E-value=1.5e-09 Score=130.77 Aligned_cols=294 Identities=14% Similarity=0.173 Sum_probs=192.9
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE---
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTK--------ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS--- 1570 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DG--------tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS--- 1570 (1922)
+.+.||. ..|.|++.+||--.+++|-.-| .|+|||..+-+.+..+......|.+++|+-...|.++..
T Consensus 98 r~y~GH~-ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~ 176 (626)
T KOG2106|consen 98 RHYLGHN-DDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDD 176 (626)
T ss_pred ccccCCC-CceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecC
Confidence 3457899 9999999999988888876666 499999888888888877788999995444446777776
Q ss_pred ecCCcEEEeccCCCC-CCcceEe-ccceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1571 SSSQDVHLWNASSIA-GGPMHSF-EGCKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~-gk~l~tf-~gh~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
+.+..+.+||++... ..++.+. +.+..+.|+|.+ +.++++ ..+.+.+|+.+.+...++.. ..... ....+
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~----Gk~H~~Fw~~~~~~l~k~~~--~fek~-ekk~V 249 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITC----GKGHLYFWTLRGGSLVKRQG--IFEKR-EKKFV 249 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEe----CCceEEEEEccCCceEEEee--ccccc-cceEE
Confidence 346678999998621 1122323 235778999954 566665 35779999999887766542 01110 11334
Q ss_pred eEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE-----EEecCCCeE--------
Q 000177 1648 SQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE-----VWDLRKFRL-------- 1709 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe-----IWDLrTgkl-------- 1709 (1922)
.+++|.++|..+-.++ .||+..+.+..+....|.+.| +++.-.+|..|- |++ .||-. .+.
T Consensus 250 l~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe 327 (626)
T KOG2106|consen 250 LCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETELPE 327 (626)
T ss_pred EEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccc-ccccccccCch
Confidence 4599999999888544 899998887776666888888 888888888665 773 67621 110
Q ss_pred ----E-----------------------------EEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhc---ccc--
Q 000177 1710 ----L-----------------------------RSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVH---TRR-- 1749 (1922)
Q Consensus 1710 ----L-----------------------------~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh---~rr-- 1749 (1922)
+ .++.+|.. +.++.+|+.+.++++.++....+|..-. ++.
T Consensus 328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~ 407 (626)
T KOG2106|consen 328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIE 407 (626)
T ss_pred hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEec
Confidence 1 11224433 6788888888887775544333332100 000
Q ss_pred ------cccCC--------cceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1750 ------VKHPL--------FAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1750 ------~ksp~--------~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+|. ...+-++|..+-..+.......++..++++|+|.++|+.. .+..+.||.|.
T Consensus 408 d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs------~d~~iyiy~Vs 477 (626)
T KOG2106|consen 408 DPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS------HDNHIYIYRVS 477 (626)
T ss_pred CceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec------CCCeEEEEEEC
Confidence 01221 1234455665533333333366799999999999999864 34566777664
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.29 E-value=6.3e-11 Score=144.63 Aligned_cols=226 Identities=15% Similarity=0.204 Sum_probs=162.2
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
|..+.+..+++|++|. +.|+|++|+.||+.+++|+.|+.|.||+-. ....+ ..|+..|.|+ .|+|-.+.|++|
T Consensus 38 yD~ndG~llqtLKgHK-DtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D~IQCM--sFNP~~h~LasC 111 (1081)
T KOG1538|consen 38 YDTSDGTLLQPLKGHK-DTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHNDAIQCM--SFNPITHQLASC 111 (1081)
T ss_pred EeCCCccccccccccc-ceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCCeeeEe--ecCchHHHhhhc
Confidence 3446778899999999 999999999999999999999999999853 22333 4599999999 999999999999
Q ss_pred cCCcEEEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
+=...-+|.... +.+...+ .+.+++|..||++|+.| -.+|+|.|-+-. +.....+.. ..+.+.+++
T Consensus 112 sLsdFglWS~~q---K~V~K~kss~R~~~CsWtnDGqylalG---~~nGTIsiRNk~-gEek~~I~R----pgg~Nspiw 180 (1081)
T KOG1538|consen 112 SLSDFGLWSPEQ---KSVSKHKSSSRIICCSWTNDGQYLALG---MFNGTISIRNKN-GEEKVKIER----PGGSNSPIW 180 (1081)
T ss_pred chhhccccChhh---hhHHhhhhheeEEEeeecCCCcEEEEe---ccCceEEeecCC-CCcceEEeC----CCCCCCCce
Confidence 877788998875 2232222 25789999999999999 788999988543 444333431 122345667
Q ss_pred EEEEcCCCC-----eEeecc-----EEEEcCCCcceeeeccCC-CceEEEEecCCCEEEEEe-----EEEecCCCeEEEE
Q 000177 1649 QIHFSPSDT-----MLLWNG-----ILWDRRNSVPVHRFDQFT-DHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRS 1712 (1922)
Q Consensus 1649 vVaFSPdG~-----lLaSgg-----rLWDlrtgk~I~kf~gh~-~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~t 1712 (1922)
.++|+|... .++... .+|.+ +|+.|.+-.... .+.|+.+.|||.|++.|+ ++|- +.|-.+.+
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGT 258 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGT 258 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEee
Confidence 799999653 222221 23322 244443222221 334899999999999988 2443 44777777
Q ss_pred EcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1713 VPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1713 l~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+...+. |.|+..|++++++.|..+.
T Consensus 259 vg~~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 259 VGEQDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred ccccceeEEEEEEccCCceEEEEEccC
Confidence 765444 8999999999999886544
No 167
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.28 E-value=2.9e-11 Score=148.65 Aligned_cols=204 Identities=15% Similarity=0.217 Sum_probs=159.6
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCC-CCceeeeccCCCCeeEEEeeecCCC
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLG---DSSHIAVGSHTKELKIFDSNS-SSPLESCTSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSP---DG~lLASGS~DGtIkIWDl~t-gk~l~tL~gHss~VtsLq~afSpDG 1565 (1922)
.+.+.....+.+.++..|. +.|.|+.||. ..++||+++.|..|+|||+.. ..++.++.+|...|++|+|+-+.-.
T Consensus 483 lrVy~Lq~l~~~~~~eAHe-sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHE-SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred eEEEEehhhhhhhheeccc-ceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 3445556666677788999 9999999996 456999999999999999854 4677899999999999965443322
Q ss_pred cEEEE-ecCCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecc
Q 000177 1566 QLLLS-SSSQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1566 ~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
..+++ |.|..|.+--.+. ......|.. .+.++..|+.++++++ +.|+.|+|||+.+|+..++|+
T Consensus 562 ~~MiscGADksimFr~~qk--~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~---cQDrnirif~i~sgKq~k~FK- 635 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQK--ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV---CQDRNIRIFDIESGKQVKSFK- 635 (1080)
T ss_pred eEEEeccCchhhheehhcc--ccCceeccccccccccceEEEeeeCCCcceEEEE---ecccceEEEeccccceeeeec-
Confidence 44555 6688776444332 111122221 2678999999999999 899999999999999999997
Q ss_pred ccccccCCCCcceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE-----EE
Q 000177 1636 TSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE-----VW 1702 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe-----IW 1702 (1922)
..++|.... +...|.|.||++.. .++|.-+|.++.+..||...+ .+.|.+|.++|++.+- ||
T Consensus 636 -----gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 636 -----GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred -----ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence 234554433 88899999999665 899999999999999999999 9999999999999882 89
Q ss_pred ecC
Q 000177 1703 DLR 1705 (1922)
Q Consensus 1703 DLr 1705 (1922)
.+.
T Consensus 711 ~lp 713 (1080)
T KOG1408|consen 711 KLP 713 (1080)
T ss_pred ECc
Confidence 875
No 168
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=3.3e-10 Score=140.43 Aligned_cols=211 Identities=12% Similarity=0.194 Sum_probs=163.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-eeeeccC-CCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP-LESCTSH-QAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~-l~tL~gH-ss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk 1587 (1922)
.+|+|++|+.+.+.||.+-.||.|-||++..+=. ...+.+| ...|.+| +|++.++++.++-+|+|.-||+.+ .+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L--~W~e~~RLFS~g~sg~i~EwDl~~--lk 101 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESL--AWAEGGRLFSSGLSGSITEWDLHT--LK 101 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeE--EEccCCeEEeecCCceEEEEeccc--Cc
Confidence 6799999999999999999999999999977543 3455555 5679999 677888888888899999999998 77
Q ss_pred cceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1588 PMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1588 ~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
++..+.. +|+++.+|.+..++.| +.||.+..+++..++...... +.. .....-+++|+|++..+++|+
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~Ig---cddGvl~~~s~~p~~I~~~r~---l~r--q~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIG---CDDGVLYDFSIGPDKITYKRS---LMR--QKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEee---cCCceEEEEecCCceEEEEee---ccc--ccceEEEEEecCCccEEEecc
Confidence 7766653 5999999999999988 788988888887776654332 110 123344599999999999877
Q ss_pred -----EEEEcCCCcceeee----ccCCC---c-e-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEE
Q 000177 1664 -----ILWDRRNSVPVHRF----DQFTD---H-G-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTIT 1722 (1922)
Q Consensus 1664 -----rLWDlrtgk~I~kf----~gh~~---~-V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVa 1722 (1922)
++||+.++..++.. .+... . + ++.|-.++. |++|. .+||-..+.+++.+..|+. .+++
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA 252 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence 99999999877622 22222 2 2 666665554 55554 5999999999999998877 7899
Q ss_pred EccCCCEEEEE
Q 000177 1723 FNARGDVIYAI 1733 (1922)
Q Consensus 1723 FSPdG~~LaSg 1733 (1922)
.++++++++++
T Consensus 253 v~~~~d~vfsa 263 (691)
T KOG2048|consen 253 VADNEDRVFSA 263 (691)
T ss_pred EcCCCCeEEEc
Confidence 99998887765
No 169
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.26 E-value=1.9e-10 Score=141.41 Aligned_cols=215 Identities=14% Similarity=0.222 Sum_probs=143.3
Q ss_pred EEEEcC---CCCEEEEEeCCCcEEEEECCCCCc------eeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCC
Q 000177 1514 CITFLG---DSSHIAVGSHTKELKIFDSNSSSP------LESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASS 1583 (1922)
Q Consensus 1514 ~LaFSP---DG~lLASGS~DGtIkIWDl~tgk~------l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t 1583 (1922)
.+.|++ ...+|+.+..||.|.++|....+. ++.+.+|.+.|..+ .|.|....|++ +.|.++++||+..
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl--~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDL--KWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEee--ccCCCceeEEEccCCceeeeeeecc
Confidence 366776 344899999999999999865433 35668999999999 66775555566 6799999999998
Q ss_pred CCCCcceE--eccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceee--e----ec---cc---cccc----
Q 000177 1584 IAGGPMHS--FEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEA--K----LS---DT---SVNL---- 1640 (1922)
Q Consensus 1584 ~~gk~l~t--f~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~--t----L~---d~---s~~~---- 1640 (1922)
.+++.. +.|| .+++|+|. ...|++| +.||.|.|||++-...-. . +. .. ....
T Consensus 132 --s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tG---gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 132 --SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTG---GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred --ceeecceeecccccccchhhhccCCCcceeec---cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 555544 6666 67999995 5677887 899999999998543100 0 00 00 0000
Q ss_pred --cC--CCCcceE---EEEcCCCCeEeecc------EEEEcCCCcc--------eeeeccCCC----ceEEEEecCCCEE
Q 000177 1641 --TG--RGHAYSQ---IHFSPSDTMLLWNG------ILWDRRNSVP--------VHRFDQFTD----HGGGGFHPAGNEV 1695 (1922)
Q Consensus 1641 --~~--~gh~~~v---VaFSPdG~lLaSgg------rLWDlrtgk~--------I~kf~gh~~----~VsVaFSPdG~~L 1695 (1922)
.. ++..... +-+..|...|+++| ++||++.... +..+.-+.. .++++....|.+|
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 00 1111111 56678889999887 9999997543 233333321 2266666778887
Q ss_pred EEEe-----EEEecCCC--eEEEEEcCCCc----eeEEEccCCCEEEEEEc
Q 000177 1696 IINS-----EVWDLRKF--RLLRSVPSLDQ----TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1696 ASGS-----eIWDLrTg--klL~tl~gH~~----~sVaFSPdG~~LaSgs~ 1735 (1922)
...+ -+||+.+. .++..+.++.. ..-..+|++.+++++..
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs 337 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS 337 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC
Confidence 6665 28898764 34555555554 34457899999999853
No 170
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=4.1e-11 Score=144.55 Aligned_cols=210 Identities=21% Similarity=0.274 Sum_probs=143.3
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
+...-+.|.||+ +.|+|+.|+.+|.+|++||.|-.+.|||....+.+..+ .||...|++++|....+++++++| .|.
T Consensus 39 rL~lE~eL~GH~-GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 39 RLDLEAELTGHT-GCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hcchhhhhcccc-ceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 345567789999 99999999999999999999999999999988888888 899999999965444467788886 599
Q ss_pred cEEEeccCCCC--------CCcceEeccc----eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCcee-eeeccccccc
Q 000177 1575 DVHLWNASSIA--------GGPMHSFEGC----KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLE-AKLSDTSVNL 1640 (1922)
Q Consensus 1575 tVkLWDl~t~~--------gk~l~tf~gh----~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i-~tL~d~s~~~ 1640 (1922)
.|+|+|+.... ....+.+..| ..++-.|++ +.|.++ +.||+|+-||++..... .....+....
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa---sEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA---SEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe---cCCcceeeecccCCccCCccccccHHHH
Confidence 99999997511 1122333333 557788877 788998 99999999999863221 1111000000
Q ss_pred cCCCC--cceEEEEcCCCCeEe-ecc-----EEEEcCC--------C----------cceeeec-cCC----C----c--
Q 000177 1641 TGRGH--AYSQIHFSPSDTMLL-WNG-----ILWDRRN--------S----------VPVHRFD-QFT----D----H-- 1683 (1922)
Q Consensus 1641 ~~~gh--~~~vVaFSPdG~lLa-Sgg-----rLWDlrt--------g----------k~I~kf~-gh~----~----~-- 1683 (1922)
..... ...+++++|...+++ .++ ++||.|. + .++..|. +|- . .
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~ 274 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT 274 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence 00111 223489999886555 555 8999542 1 1244442 221 1 1
Q ss_pred -e-EEEEecCCCEEEEEe--E---EEecCCCeEE
Q 000177 1684 -G-GGGFHPAGNEVIINS--E---VWDLRKFRLL 1710 (1922)
Q Consensus 1684 -V-sVaFSPdG~~LASGS--e---IWDLrTgklL 1710 (1922)
. .+.|+|||..|+..- + ++|+..++..
T Consensus 275 ~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 275 CCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred eeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 1 578999998776643 2 7787765543
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=7e-10 Score=124.27 Aligned_cols=199 Identities=14% Similarity=0.203 Sum_probs=146.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------C-CceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEec
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNS---------S-SPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWN 1580 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t---------g-k~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWD 1580 (1922)
.|..-+|+|.+++|+.|+.+|+|.++.+.+ + ..+..+++|.++|+.+ .|. ..+|+++.||.|+=|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~--~f~--d~~Lls~gdG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYL--AFH--DDFLLSGGDGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeee--eee--hhheeeccCceEEEee
Confidence 466678999999999999999999999853 2 2345668999999999 665 4588899899999888
Q ss_pred cCCCCC----CcceE-----------eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1581 ASSIAG----GPMHS-----------FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1581 l~t~~g----k~l~t-----------f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
++.... +++.. ...++++-..|..+-++++ +.|+.++.||+++|+...++. ||
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A---gGD~~~y~~dlE~G~i~r~~r---------GH 155 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA---GGDGVIYQVDLEDGRIQREYR---------GH 155 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe---cCCeEEEEEEecCCEEEEEEc---------CC
Confidence 764211 11111 1225788889877777777 679999999999999999886 88
Q ss_pred cceE--EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce---------EEEEecCCCEEEEEe----EEEecC
Q 000177 1646 AYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG---------GGGFHPAGNEVIINS----EVWDLR 1705 (1922)
Q Consensus 1646 ~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V---------sVaFSPdG~~LASGS----eIWDLr 1705 (1922)
+..+ +.--.....+++++ ++||.++++++..+....+.- -.+..-+..++++|+ .+|+++
T Consensus 156 tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLr 235 (325)
T KOG0649|consen 156 TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLR 235 (325)
T ss_pred cceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEecc
Confidence 8776 44434445566776 999999999988775433211 245566778999888 499999
Q ss_pred CCeEEEEEcCCCc-eeEEEcc
Q 000177 1706 KFRLLRSVPSLDQ-TTITFNA 1725 (1922)
Q Consensus 1706 TgklL~tl~gH~~-~sVaFSP 1725 (1922)
+.++..+++-... ..+.|-.
T Consensus 236 sse~t~vfpipa~v~~v~F~~ 256 (325)
T KOG0649|consen 236 SSESTCVFPIPARVHLVDFVD 256 (325)
T ss_pred CCCceEEEecccceeEeeeec
Confidence 9888777763222 4566654
No 172
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.25 E-value=2.3e-10 Score=130.68 Aligned_cols=217 Identities=16% Similarity=0.218 Sum_probs=153.7
Q ss_pred cCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC---CcEEEEec-CCcEEEe
Q 000177 1505 RDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE---TQLLLSSS-SQDVHLW 1579 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD---G~lLaSSs-DgtVkLW 1579 (1922)
.+|. -.|..+.|-| |.-.+.++|.|.++||||.++-+....|+ -.+.|++- ++||- ..+|+++. |-.|+|-
T Consensus 98 ~~Hk-y~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYsh--amSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 98 NGHK-YAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSH--AMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred ccce-eeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehh--hcChhhhcceEEEEecCCCcEEEE
Confidence 3577 8899999999 66689999999999999999998887775 34567776 55552 34666675 7789999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCC-ceeeeeccc-----cccccCCCCc--c
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTY-QLEAKLSDT-----SVNLTGRGHA--Y 1647 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~-----s~~~~~~gh~--~ 1647 (1922)
|+.+ |.+-+++.|| .++.|+|...+++.. ++.||.|++||++.. .|..++... ........|. .
T Consensus 174 Di~S--Gs~sH~LsGHr~~vlaV~Wsp~~e~vLat--gsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 174 DIAS--GSFSHTLSGHRDGVLAVEWSPSSEWVLAT--GSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred eccC--CcceeeeccccCceEEEEeccCceeEEEe--cCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence 9998 8899999987 679999987765443 389999999999865 455554311 1111122333 4
Q ss_pred eEEEEcCCCCeEeecc-----EEEEcCCCcc-eeeec--cCCCceE------------EEEecCCCEEEEEeEEEecCCC
Q 000177 1648 SQIHFSPSDTMLLWNG-----ILWDRRNSVP-VHRFD--QFTDHGG------------GGFHPAGNEVIINSEVWDLRKF 1707 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg-----rLWDlrtgk~-I~kf~--gh~~~Vs------------VaFSPdG~~LASGSeIWDLrTg 1707 (1922)
+.++|+.++.++++++ ++|+..+|+. +..|- .|++.++ +.+-|++.-++ ++++-.+
T Consensus 250 ngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~la----ll~~~sg 325 (397)
T KOG4283|consen 250 NGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLA----LLNLLEG 325 (397)
T ss_pred eeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEE----EEEccCc
Confidence 4499999999999888 8999998753 22221 1122111 23334443332 6777788
Q ss_pred eEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1708 RLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1708 klL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
..++.+..|-. .|..|-|+=+..+++
T Consensus 326 s~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 326 SFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred eEEEeeecccceeeEEeecCchhhhhcc
Confidence 88888887754 577788877777776
No 173
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.4e-09 Score=135.85 Aligned_cols=193 Identities=14% Similarity=0.154 Sum_probs=128.3
Q ss_pred CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e---cCCcEEEeccCCCCCCcceEeccc-eeEEEcCCC
Q 000177 1530 TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S---SSQDVHLWNASSIAGGPMHSFEGC-KAARFSNSG 1604 (1922)
Q Consensus 1530 DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S---sDgtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG 1604 (1922)
...|.+||.+..+. +.+..+...+.+. .|||||+.|+. + .+..|.+||+.+...+.+..+.++ ..+.|+|||
T Consensus 178 ~~~l~~~d~dg~~~-~~lt~~~~~~~~p--~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 178 PYELRVSDYDGYNQ-FVVHRSPQPLMSP--AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG 254 (429)
T ss_pred ceeEEEEcCCCCCC-EEeecCCCceeee--EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence 34789999875544 4455566778888 89999998876 3 245799999987222333445554 568999999
Q ss_pred CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEE--EcCCCcceee
Q 000177 1605 NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILW--DRRNSVPVHR 1676 (1922)
Q Consensus 1605 ~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLW--Dlrtgk~I~k 1676 (1922)
++|+.......+..|++||+.+++...... .........|+|+|+.|+..+ .|| |+.++.. ..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTD--------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccC--------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence 988875332333469999999877644322 112233489999999887433 555 5555543 34
Q ss_pred eccCCCce-EEEEecCCCEEEEEe--------EEEecCCCeEEEEEc-CCCceeEEEccCCCEEEEEEc
Q 000177 1677 FDQFTDHG-GGGFHPAGNEVIINS--------EVWDLRKFRLLRSVP-SLDQTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1677 f~gh~~~V-sVaFSPdG~~LASGS--------eIWDLrTgklL~tl~-gH~~~sVaFSPdG~~LaSgs~ 1735 (1922)
+....... ...|+|+|++|+..+ .+||+.+++.. .+. ........|+|||++|+.+..
T Consensus 326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 326 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEc
Confidence 43333333 789999999998765 26888877643 343 222357899999999998754
No 174
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.5e-09 Score=135.52 Aligned_cols=208 Identities=12% Similarity=0.089 Sum_probs=135.6
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe--cCC--
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSH---TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS--SSQ-- 1574 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~---DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS--sDg-- 1574 (1922)
+.+..+. ..+.+.+|||||+.|+..+. +..|.+|++.+++... +......+..+ .|+|||+.|+.. .++
T Consensus 192 ~~lt~~~-~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~--~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 192 FVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAP--AFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred EEeecCC-CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCe--EECCCCCEEEEEEcCCCCc
Confidence 4445565 78999999999999887543 4579999998876433 22222234456 889999988753 244
Q ss_pred cEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1575 DVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
.|++||+.+ ++......+ +....|+|||+.|+.++.......|.++|+.++... .+. ..++......
T Consensus 268 ~I~~~d~~t--g~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt-------~~~~~~~~~~ 337 (429)
T PRK03629 268 NLYVMDLAS--GQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT-------WEGSQNQDAD 337 (429)
T ss_pred EEEEEECCC--CCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee-------cCCCCccCEE
Confidence 589999986 443322222 367899999999888743222224555577766543 232 0122333488
Q ss_pred EcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe--------EEEecCCCeEEEEEcC
Q 000177 1652 FSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--------EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1652 FSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--------eIWDLrTgklL~tl~g 1715 (1922)
|+|+|++|+..+ .+||+.++.. ..+..........|+|||++|+..+ .+|++ ++...+.+.+
T Consensus 338 ~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~ 415 (429)
T PRK03629 338 VSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPA 415 (429)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECcc
Confidence 999999987543 6789887754 3343222222688999999998887 25566 4666677776
Q ss_pred CCc--eeEEEcc
Q 000177 1716 LDQ--TTITFNA 1725 (1922)
Q Consensus 1716 H~~--~sVaFSP 1725 (1922)
|.. ...+|+|
T Consensus 416 ~~~~~~~p~Wsp 427 (429)
T PRK03629 416 TDGQVKFPAWSP 427 (429)
T ss_pred CCCCcCCcccCC
Confidence 654 6788887
No 175
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.2e-09 Score=136.43 Aligned_cols=192 Identities=16% Similarity=0.198 Sum_probs=125.6
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec----CCcEEEeccCCCCCCcceEeccc-eeEEEcCCCC
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS----SQDVHLWNASSIAGGPMHSFEGC-KAARFSNSGN 1605 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs----DgtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~ 1605 (1922)
.+|.+||.. +...+.+..|...+.+. .|+|||+.|+..+ ...|.+||+.+.....+..+.++ .++.|+|+|+
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p--~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSP--AWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccc--cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC
Confidence 468999985 44445666677788888 8899999888742 34699999986222223334444 4689999999
Q ss_pred EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceeee
Q 000177 1606 LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRF 1677 (1922)
Q Consensus 1606 ~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf 1677 (1922)
.|+.......+..|++||+.+++... +.. ........+|+|+|+.|+..+ .++|+.+++. ..+
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~-------~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~l 331 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTR-LTN-------HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERL 331 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEE-Ccc-------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe
Confidence 87654222234579999999887543 320 111223389999999887443 3445555543 222
Q ss_pred ccCCCce-EEEEecCCCEEEEEe--------EEEecCCCeEEEEEcCCCceeEEEccCCCEEEEEE
Q 000177 1678 DQFTDHG-GGGFHPAGNEVIINS--------EVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1678 ~gh~~~V-sVaFSPdG~~LASGS--------eIWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs 1734 (1922)
....... ...|+|+|++|+..+ .+||+.+++...-..+.......|+|+|++|+...
T Consensus 332 t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s 397 (433)
T PRK04922 332 TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYAT 397 (433)
T ss_pred ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEE
Confidence 2222223 789999999998754 28999887654322232336789999999988764
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=3.5e-11 Score=155.71 Aligned_cols=195 Identities=16% Similarity=0.258 Sum_probs=146.6
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCc-EEEEe-c
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDS-SHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQ-LLLSS-S 1572 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~-lLaSS-s 1572 (1922)
+..+.++..|. +.|..+.|++.. ++||+|+.||.|.|||+++-+.-.++ ..-.+.|.+| +|+..-+ +|+++ .
T Consensus 106 ~~~la~~~~h~-G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l--sWNrkvqhILAS~s~ 182 (1049)
T KOG0307|consen 106 EEVLATKSKHT-GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL--SWNRKVSHILASGSP 182 (1049)
T ss_pred hHHHhhhcccC-CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe--ccchhhhHHhhccCC
Confidence 34456677899 999999999955 59999999999999999876554554 2246789999 6766544 45554 5
Q ss_pred CCcEEEeccCCCCCCcceEecc------ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCC
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEG------CKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~g------h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~g 1644 (1922)
++++.|||++. .+++..+.. +..++|||++ ..+++++.+...-.|.+||+|.-. .++++ .+
T Consensus 183 sg~~~iWDlr~--~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~---------~~ 251 (1049)
T KOG0307|consen 183 SGRAVIWDLRK--KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL---------EG 251 (1049)
T ss_pred CCCceeccccC--CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh---------cc
Confidence 88999999998 566666654 2579999975 567777556666789999998532 33333 35
Q ss_pred CcceE--EEEcCCC-CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEE-EEEe-----EEEecCC
Q 000177 1645 HAYSQ--IHFSPSD-TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEV-IINS-----EVWDLRK 1706 (1922)
Q Consensus 1645 h~~~v--VaFSPdG-~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~L-ASGS-----eIWDLrT 1706 (1922)
|...+ +.|++.+ .++++++ .+|+..+++.+..|....+++ .+.|+|...-+ ++.+ .|+.+.+
T Consensus 252 H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 252 HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 66555 8899988 7788888 899999999999998888888 99999987744 4444 3666654
No 177
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=1.6e-10 Score=138.80 Aligned_cols=285 Identities=15% Similarity=0.153 Sum_probs=189.4
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEe-eecCCCcEEEEec
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQS-HLSGETQLLLSSS 1572 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~-afSpDG~lLaSSs 1572 (1922)
..+++....|.+|. +.|+.|.|+..|..|++||.|..|.+||+.+++....| .||...|..-+| -|+.+..++.++.
T Consensus 129 vqr~~l~~kL~~H~-GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 129 VQRLRLQKKLNKHK-GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred HHHhhhhhcccCCC-CccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc
Confidence 34555566788999 99999999999999999999999999999999988877 799999988854 2333434444466
Q ss_pred CCcEEEeccCCCCCCcc-----eEecc-ceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1573 SQDVHLWNASSIAGGPM-----HSFEG-CKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l-----~tf~g-h~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
||.|++=.+... +.+. ....+ ++.++.-|+ ...|.++ +.|+.+.-+|++++....++.+..... ...-
T Consensus 208 dgqvr~s~i~~t-~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~---geD~~v~~~Dlr~~~pa~~~~cr~~~~-~~~v 282 (559)
T KOG1334|consen 208 DGQVRVSEILET-GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC---GEDAVVFHIDLRQDVPAEKFVCREADE-KERV 282 (559)
T ss_pred cCceeeeeeccc-cceecceecccccCccceeeecCCCCCccccc---ccccceeeeeeccCCccceeeeeccCC-ccce
Confidence 999988766431 2222 22223 266777775 4678888 889999999999887766654111000 0001
Q ss_pred cceEEEEcCCCC-eEeecc-----EEEEcCCC------cceeeeccCC----C--ce-EEEEecCCC-EEEEEeE--EEe
Q 000177 1646 AYSQIHFSPSDT-MLLWNG-----ILWDRRNS------VPVHRFDQFT----D--HG-GGGFHPAGN-EVIINSE--VWD 1703 (1922)
Q Consensus 1646 ~~~vVaFSPdG~-lLaSgg-----rLWDlrtg------k~I~kf~gh~----~--~V-sVaFSPdG~-~LASGSe--IWD 1703 (1922)
....++.+|... .++++| ++||.+.- .++.+|-.++ . .| +++|+.++. .+++-.+ ||=
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 123388899886 555666 89998842 2345553221 2 23 899997665 4455442 332
Q ss_pred cC----CC----------eEEEE-EcCCCc----eeE-EEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEec
Q 000177 1704 LR----KF----------RLLRS-VPSLDQ----TTI-TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDA 1763 (1922)
Q Consensus 1704 Lr----Tg----------klL~t-l~gH~~----~sV-aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da 1763 (1922)
.+ .| ..++. ++||.+ ..| -|-|...|+++|+.- ..+.+|+.
T Consensus 363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC-------------------GhIFiW~K 423 (559)
T KOG1334|consen 363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC-------------------GHIFIWDK 423 (559)
T ss_pred eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc-------------------ceEEEEec
Confidence 11 12 23344 788887 233 378889999998421 23456676
Q ss_pred CCCceeeeeccCCc-eEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1764 INYSDIATIPVDRC-VLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1764 ~dys~IaTidvkr~-I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
.+...|...+..+. |+++.-+|....||. ...+..|+||..
T Consensus 424 ~t~eii~~MegDr~VVNCLEpHP~~PvLAs------SGid~DVKIWTP 465 (559)
T KOG1334|consen 424 KTGEIIRFMEGDRHVVNCLEPHPHLPVLAS------SGIDHDVKIWTP 465 (559)
T ss_pred chhHHHHHhhcccceEeccCCCCCCchhhc------cCCccceeeecC
Confidence 66666666665444 778888999888883 456788999976
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.20 E-value=3.1e-10 Score=129.48 Aligned_cols=226 Identities=15% Similarity=0.253 Sum_probs=165.2
Q ss_pred EEecCCCCCCEEEEEEcC-CCCEEEEEeCC-------CcEEEEECCCC---------Cceeeec-cCCCCeeEEEeeecC
Q 000177 1502 RTCRDDAGALLTCITFLG-DSSHIAVGSHT-------KELKIFDSNSS---------SPLESCT-SHQAPVTLVQSHLSG 1563 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSP-DG~lLASGS~D-------GtIkIWDl~tg---------k~l~tL~-gHss~VtsLq~afSp 1563 (1922)
++|..|. +.||.++-+| +.++|+|+-.+ ..+.||.+... +++..+. .|-+.|.|| .|.|
T Consensus 57 kvf~h~a-gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cv--ew~P 133 (370)
T KOG1007|consen 57 KVFFHHA-GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCV--EWEP 133 (370)
T ss_pred hhhhcCC-cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeE--EEcC
Confidence 4566777 9999999999 55677776553 24689998532 2334442 556689999 7899
Q ss_pred CCcEEEEecCCcEEEeccCCCCCCc-ceEecc---------ceeEEEcC--CCCEEEEeecCCCCCeEEEEECCCCceee
Q 000177 1564 ETQLLLSSSSQDVHLWNASSIAGGP-MHSFEG---------CKAARFSN--SGNLFAALPTETSDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1564 DG~lLaSSsDgtVkLWDl~t~~gk~-l~tf~g---------h~sVaFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~ 1631 (1922)
++..+++-.|..|.+|++.. +.. +..+.. .++-+|+| +|+.+++ ..|+++..||++|.++..
T Consensus 134 ns~klasm~dn~i~l~~l~e--ss~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t----t~d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 134 NSDKLASMDDNNIVLWSLDE--SSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT----TSDSTLQFWDLRTMKKNN 207 (370)
T ss_pred CCCeeEEeccCceEEEEccc--CcchheeecccccccccceecccccCCCCccceEEE----eCCCcEEEEEccchhhhc
Confidence 99999998899999999987 322 222211 16778998 7888888 468999999999988887
Q ss_pred eeccccccccCCCCcceEEEEcCCCCeEe-ecc-----EEEEcCCCc-ceeeeccCCCce-EEEEecCCC-EEEEEe---
Q 000177 1632 KLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG-----ILWDRRNSV-PVHRFDQFTDHG-GGGFHPAGN-EVIINS--- 1699 (1922)
Q Consensus 1632 tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg-----rLWDlrtgk-~I~kf~gh~~~V-sVaFSPdG~-~LASGS--- 1699 (1922)
.+. ..+++.+..+.|+|+-++++ ++| +|||.|..+ ++..+.+|..++ ++.|+|-.. .|++|+
T Consensus 208 sI~------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 208 SIE------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred chh------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCc
Confidence 776 33566666699999987655 666 999999654 899999999999 999999754 555555
Q ss_pred --EEEecCC-----------------------------CeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhh
Q 000177 1700 --EVWDLRK-----------------------------FRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVM 1742 (1922)
Q Consensus 1700 --eIWDLrT-----------------------------gklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~ 1742 (1922)
-+|...+ ...+.++..|.. .+++||.-..+|++....++..++
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 1443221 012345666655 799999999999998766654443
No 179
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.18 E-value=3.3e-10 Score=131.23 Aligned_cols=218 Identities=18% Similarity=0.283 Sum_probs=152.9
Q ss_pred CCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC-cEEEE-ecCCcEEEec
Q 000177 1507 DAGALLTCITFLGD----SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET-QLLLS-SSSQDVHLWN 1580 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPD----G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG-~lLaS-SsDgtVkLWD 1580 (1922)
|. .....|+|+-| .-+||.|+.-|.|+|.|+.++++...+.+|...|+.| .+.|+. ++|++ |.|.+|++||
T Consensus 88 ~~-Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINei--k~~p~~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 88 HD-ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEI--KFHPDRPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CC-cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhh--hcCCCCCcEEEEecCCceEEEEe
Confidence 66 77888899863 3389999999999999999999999999999999999 788875 57777 4599999999
Q ss_pred cCCCCCCcceEecc---c----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecc------ccccc-------
Q 000177 1581 ASSIAGGPMHSFEG---C----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD------TSVNL------- 1640 (1922)
Q Consensus 1581 l~t~~gk~l~tf~g---h----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d------~s~~~------- 1640 (1922)
+++ ..|+..|-| | .++.|+++|.+|+++ +.|.++++|++...+....++. .....
T Consensus 165 I~~--~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~Sc---GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~ 239 (385)
T KOG1034|consen 165 IQT--DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASC---GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKT 239 (385)
T ss_pred ccC--CeEEEEecccccccCcEEEEEEcCCCCeeecc---CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccc
Confidence 998 889988865 3 789999999999999 8999999999985443222210 00000
Q ss_pred ------cCCCCcceE--EEEcCCCCeEeecc-----EEEEc-CCCc-------------ceeeeccCCCce---EEEEec
Q 000177 1641 ------TGRGHAYSQ--IHFSPSDTMLLWNG-----ILWDR-RNSV-------------PVHRFDQFTDHG---GGGFHP 1690 (1922)
Q Consensus 1641 ------~~~gh~~~v--VaFSPdG~lLaSgg-----rLWDl-rtgk-------------~I~kf~gh~~~V---sVaFSP 1690 (1922)
+..-|...+ +.| -|+++++-+ ..|-. +-+. .+..|+-....+ ..+|.|
T Consensus 240 ~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~ 317 (385)
T KOG1034|consen 240 HFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP 317 (385)
T ss_pred ccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH
Confidence 001122211 222 135666544 67766 2111 123333333333 557778
Q ss_pred CCCEEEEEeE-----EEecCCCeE------EEEEcCCCceeEEEccCCCEEEEEE
Q 000177 1691 AGNEVIINSE-----VWDLRKFRL------LRSVPSLDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1691 dG~~LASGSe-----IWDLrTgkl------L~tl~gH~~~sVaFSPdG~~LaSgs 1734 (1922)
-++.||.|.. +||++...+ .+...+......+||-+|.+|+...
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc 372 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC 372 (385)
T ss_pred HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe
Confidence 8999999883 999987654 2222233337899999999999874
No 180
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.18 E-value=3.1e-10 Score=135.76 Aligned_cols=210 Identities=16% Similarity=0.198 Sum_probs=141.8
Q ss_pred cCCccccccceee--ecCceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCc---------------
Q 000177 1482 SGVHRNRRDRQFV--YSRFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSP--------------- 1543 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi--~srfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~--------------- 1543 (1922)
|...|....|+|- -....-+..|..|. .+|.++.|+| +...+++.|+||+|+.-|++++..
T Consensus 206 GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~ 284 (498)
T KOG4328|consen 206 GDKGGQVGLWNFGTQEKDKDGVYLFTPHS-GPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSS 284 (498)
T ss_pred ccCCCcEEEEecCCCCCccCceEEeccCC-ccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeee
Confidence 3334444455552 22333456678899 9999999999 667999999999999888753210
Q ss_pred ------------------------------eeeeccCCCCeeEEEeeecCCC-cEEEEec-CCcEEEeccCCCCCCc---
Q 000177 1544 ------------------------------LESCTSHQAPVTLVQSHLSGET-QLLLSSS-SQDVHLWNASSIAGGP--- 1588 (1922)
Q Consensus 1544 ------------------------------l~tL~gHss~VtsLq~afSpDG-~lLaSSs-DgtVkLWDl~t~~gk~--- 1588 (1922)
...+.-|...|++| +++|.. .+|+|++ |++++|||++...++.
T Consensus 285 ~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv--~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ 362 (498)
T KOG4328|consen 285 LDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV--ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF 362 (498)
T ss_pred ccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee--ecCCCCchheeecccCcceeeeehhhhcCCCCcc
Confidence 11123367788999 788865 4666654 9999999998744433
Q ss_pred ceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECC----CCceeeeeccccccccCCCCcceEEEEcCCCCeEee
Q 000177 1589 MHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQ----TYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLW 1661 (1922)
Q Consensus 1589 l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr----Tgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaS 1661 (1922)
+.++. .++++.|||++-.|++. +.|..|+|||.. .-....++. ..+..++--....+.|.|+..+|+.
T Consensus 363 lst~~HrrsV~sAyFSPs~gtl~TT---~~D~~IRv~dss~~sa~~~p~~~I~--Hn~~t~RwlT~fKA~W~P~~~li~v 437 (498)
T KOG4328|consen 363 LSTLPHRRSVNSAYFSPSGGTLLTT---CQDNEIRVFDSSCISAKDEPLGTIP--HNNRTGRWLTPFKAAWDPDYNLIVV 437 (498)
T ss_pred eecccccceeeeeEEcCCCCceEee---ccCCceEEeecccccccCCccceee--ccCcccccccchhheeCCCccEEEE
Confidence 22222 24789999987778888 899999999984 222222332 0000000001112899999999998
Q ss_pred cc-----EEEEcCCCcceeeeccCCC-ce--EEEEecCCCEEEEEe
Q 000177 1662 NG-----ILWDRRNSVPVHRFDQFTD-HG--GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1662 gg-----rLWDlrtgk~I~kf~gh~~-~V--sVaFSPdG~~LASGS 1699 (1922)
+. -++|-..++.+..+..... .| -..|||-+..+++|+
T Consensus 438 g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~ 483 (498)
T KOG4328|consen 438 GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGG 483 (498)
T ss_pred eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccC
Confidence 87 6888888888888766655 44 468999999788777
No 181
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.17 E-value=2.6e-10 Score=131.71 Aligned_cols=203 Identities=14% Similarity=0.113 Sum_probs=142.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe--cCCcEEEeccCCCCCCcceE
Q 000177 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS--SSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS--sDgtVkLWDl~t~~gk~l~t 1591 (1922)
-++|||+|++||+.+.- .+.|-|.++-+..+.|.+ -..|..| .|..|..+++++ .|+.|.+|++.. ..-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yi--eW~ads~~ilC~~yk~~~vqvwsl~Q--pew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYI--EWKADSCHILCVAYKDPKVQVWSLVQ--PEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhhe--eeeccceeeeeeeeccceEEEEEeec--ceeEEE
Confidence 57899999999999877 778889888877666654 3456677 566788888774 499999999986 222333
Q ss_pred ec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeeccE---
Q 000177 1592 FE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGI--- 1664 (1922)
Q Consensus 1592 f~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSggr--- 1664 (1922)
+. +..++.|+|||+.|+..+ .-|-.|.+|.+.|.+....-. ..+....++|+|+|++.+..++
T Consensus 87 Ideg~agls~~~WSPdgrhiL~ts--eF~lriTVWSL~t~~~~~~~~--------pK~~~kg~~f~~dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTS--EFDLRITVWSLNTQKGYLLPH--------PKTNVKGYAFHPDGQFCAILSRRDC 156 (447)
T ss_pred eccCCCcceeeeECCCcceEeeee--cceeEEEEEEeccceeEEecc--------cccCceeEEECCCCceeeeeecccH
Confidence 33 347899999998777652 567889999999877654321 2344556999999999987762
Q ss_pred -----EEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeEEEecCCCeEEEEEc-CCCceeEEEccCCCEEEEEEcc
Q 000177 1665 -----LWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSEVWDLRKFRLLRSVP-SLDQTTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1665 -----LWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSeIWDLrTgklL~tl~-gH~~~sVaFSPdG~~LaSgs~~ 1736 (1922)
|..-.....++.|+..+... .+.|+|||+.|+ |||---.-.+..+. +.....+.|+|.+++|+.|+.+
T Consensus 157 kdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la----Vwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD 231 (447)
T KOG4497|consen 157 KDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA----VWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYD 231 (447)
T ss_pred HHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE----EecchhhheeeeeeeccceeEEEeccccceEEeeccc
Confidence 11111223455565544444 899999999999 77753222222222 2333689999999999998655
No 182
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=4.5e-09 Score=131.33 Aligned_cols=190 Identities=19% Similarity=0.222 Sum_probs=125.9
Q ss_pred CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec----CCcEEEeccCCCCCCc--ceEecc-ceeEEEcC
Q 000177 1530 TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS----SQDVHLWNASSIAGGP--MHSFEG-CKAARFSN 1602 (1922)
Q Consensus 1530 DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs----DgtVkLWDl~t~~gk~--l~tf~g-h~sVaFSP 1602 (1922)
...|.+||.+ +...+.+..|...|.+. .|+|||+.|+..+ +..|.+||+.+ +.. +..+.+ .....|+|
T Consensus 181 ~~~l~~~d~d-g~~~~~lt~~~~~v~~p--~wSpDG~~lay~s~~~g~~~i~~~dl~~--g~~~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 181 IKRLAIMDQD-GANVRYLTDGSSLVLTP--RFSPNRQEITYMSYANGRPRVYLLDLET--GQRELVGNFPGMTFAPRFSP 255 (435)
T ss_pred ceEEEEECCC-CCCcEEEecCCCCeEee--EECCCCCEEEEEEecCCCCEEEEEECCC--CcEEEeecCCCcccCcEECC
Confidence 3478899985 44556677788889988 8999999887732 46899999987 433 223333 36789999
Q ss_pred CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcce
Q 000177 1603 SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPV 1674 (1922)
Q Consensus 1603 DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I 1674 (1922)
||+.|+..........|.+||+.++.... +.. .........|+|||+.|+..+ .+||+..+..
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~-------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~- 326 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTD-------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP- 326 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCceEE-ccC-------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-
Confidence 99987654322233458888998876533 330 112223389999999887433 5667665543
Q ss_pred eeeccCCCce-EEEEecCCCEEEEEe------E--EEecCCCeEEEEEc-CCCceeEEEccCCCEEEEEE
Q 000177 1675 HRFDQFTDHG-GGGFHPAGNEVIINS------E--VWDLRKFRLLRSVP-SLDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1675 ~kf~gh~~~V-sVaFSPdG~~LASGS------e--IWDLrTgklL~tl~-gH~~~sVaFSPdG~~LaSgs 1734 (1922)
+.+..+...+ ...|+|+|++|+..+ + +||+.++. .+.+. +.....+.|+|+|++|+...
T Consensus 327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 327 RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEE
Confidence 3343333333 678999999998765 2 67775443 23332 23336899999999988764
No 183
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=2.2e-09 Score=134.19 Aligned_cols=208 Identities=13% Similarity=0.077 Sum_probs=134.8
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE--ecCC-
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHT---KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS--SSSQ- 1574 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS--SsDg- 1574 (1922)
.+.+..|. ..+.+.+|+|||+.|+..+.+ ..|.+||+.+++.. .+..+.+..... .|+|||+.|+. +.++
T Consensus 196 ~~~lt~~~-~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~--~~SpDG~~l~~~~s~~g~ 271 (433)
T PRK04922 196 PQTILRSA-EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAP--SFSPDGRRLALTLSRDGN 271 (433)
T ss_pred ceEeecCC-CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCc--eECCCCCEEEEEEeCCCC
Confidence 44456666 789999999999999988744 46999999887653 333334444456 88999987754 3344
Q ss_pred -cEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1575 -DVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1575 -tVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
.|++||+.+ +. +..+.. ...+.|+|||++|+.++.......|.++|+.+++... +. ..+.....
T Consensus 272 ~~Iy~~d~~~--g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt-------~~g~~~~~ 340 (433)
T PRK04922 272 PEIYVMDLGS--RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LT-------FQGNYNAR 340 (433)
T ss_pred ceEEEEECCC--CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ee-------cCCCCccC
Confidence 699999986 43 333332 2568999999998887432222357777877765432 22 01222334
Q ss_pred EEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE--------EEecCCCeEEEEE
Q 000177 1650 IHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE--------VWDLRKFRLLRSV 1713 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe--------IWDLrTgklL~tl 1713 (1922)
.+|+|+|++|+..+ .+||+.+++.. .+..........|+|||++|+..+. +|++. +...+.+
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l 418 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRL 418 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEc
Confidence 89999999988432 68999887654 3332222237799999999887662 45553 4444445
Q ss_pred cCCC--ceeEEEcc
Q 000177 1714 PSLD--QTTITFNA 1725 (1922)
Q Consensus 1714 ~gH~--~~sVaFSP 1725 (1922)
..+. ...++|+|
T Consensus 419 ~~~~g~~~~p~wsp 432 (433)
T PRK04922 419 VSADGEVREPAWSP 432 (433)
T ss_pred ccCCCCCCCCccCC
Confidence 4332 25666765
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.14 E-value=1.6e-09 Score=132.69 Aligned_cols=248 Identities=13% Similarity=0.182 Sum_probs=165.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l 1589 (1922)
.|..++|-|||..|+.+..+ .+.|||.+.|..+.++++|...|+++ +|+.||+.+++| +|..|.+|+-+- .|...
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycV--Ays~dGkrFASG~aDK~VI~W~~kl-EG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCV--AYAKDGKRFASGSADKSVIIWTSKL-EGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEE--EEccCCceeccCCCceeEEEecccc-cceee
Confidence 49999999999988776554 58899999999999999999999999 889999999996 599999999764 23333
Q ss_pred eEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----
Q 000177 1590 HSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----- 1663 (1922)
Q Consensus 1590 ~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----- 1663 (1922)
.+... +.|+.|+|-...+++++.. ..-+|........+ .. .......++|..||++++-+-
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLs----dFglWS~~qK~V~K-~k--------ss~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLS----DFGLWSPEQKSVSK-HK--------SSSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchh----hccccChhhhhHHh-hh--------hheeEEEeeecCCCcEEEEeccCceE
Confidence 33332 4899999999999998432 25678766433221 11 123344599999999999654
Q ss_pred EEEEcCCCcceeeec---cCCCce-EEEEecCCC-----EEEEEe-----EEEecCCCeEEEEEc--CCCceeEEEccCC
Q 000177 1664 ILWDRRNSVPVHRFD---QFTDHG-GGGFHPAGN-----EVIINS-----EVWDLRKFRLLRSVP--SLDQTTITFNARG 1727 (1922)
Q Consensus 1664 rLWDlrtgk~I~kf~---gh~~~V-sVaFSPdG~-----~LASGS-----eIWDLrTgklL~tl~--gH~~~sVaFSPdG 1727 (1922)
.+-+ .++.+--+++ |.+.+| +++|+|+.. .++... .++.+ +|+.+..-. +.+..|+.+-|+|
T Consensus 157 siRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 157 SIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred Eeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCC
Confidence 2222 3455544444 356667 999999742 333332 13333 244443222 2333799999999
Q ss_pred CEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeee-ccCCceEEEEEcCCCceEEEEecCC
Q 000177 1728 DVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI-PVDRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1728 ~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi-dvkr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
.++..|..+..-. |.+-++ -.+.|+ +.+.=|+.+...|++.++++-..|.
T Consensus 235 Ey~LiGGsdk~L~-----------------~fTR~G---vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 235 EYILLGGSDKQLS-----------------LFTRDG---VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred cEEEEccCCCceE-----------------EEeecC---eEEeeccccceeEEEEEEccCCceEEEEEccC
Confidence 9999884333211 222121 122333 2345599999999999888776443
No 185
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.14 E-value=4e-08 Score=120.77 Aligned_cols=283 Identities=14% Similarity=0.133 Sum_probs=176.1
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS- 1571 (1922)
+...+.+.+.++.... .....+.|+|||+++++.+.||.|.+||+.+++.+.++..-. ...++ ++|+||++++++
T Consensus 21 iD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i--~~s~DG~~~~v~n 96 (369)
T PF02239_consen 21 IDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGI--AVSPDGKYVYVAN 96 (369)
T ss_dssp EETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEE--EE--TTTEEEEEE
T ss_pred EECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceE--EEcCCCCEEEEEe
Confidence 3345667778787544 344567899999999999999999999999999999886433 34667 889999999885
Q ss_pred -cCCcEEEeccCCCCCCcceEecc-----------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceee--eecccc
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFEG-----------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEA--KLSDTS 1637 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~g-----------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~--tL~d~s 1637 (1922)
..+++.++|.++ .+++.++.. ...+..+|....++..- -.-+.|.+.|....+.+. .+.
T Consensus 97 ~~~~~v~v~D~~t--le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l--kd~~~I~vVdy~d~~~~~~~~i~--- 169 (369)
T PF02239_consen 97 YEPGTVSVIDAET--LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL--KDTGEIWVVDYSDPKNLKVTTIK--- 169 (369)
T ss_dssp EETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE--TTTTEEEEEETTTSSCEEEEEEE---
T ss_pred cCCCceeEecccc--ccceeecccccccccccCCCceeEEecCCCCEEEEEE--ccCCeEEEEEeccccccceeeec---
Confidence 389999999988 777776642 13566678777555441 334778888877654332 222
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCC----CceEEEEecC----------CCEE--
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFT----DHGGGGFHPA----------GNEV-- 1695 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~----~~VsVaFSPd----------G~~L-- 1695 (1922)
.+....-..|+|++++++.+. .++|..+++.+..++... ....-..||. +.+.
T Consensus 170 -----~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 170 -----VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp -------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred -----ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 122223389999999987644 689988887766554321 1222222332 2222
Q ss_pred EEEe---EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeee
Q 000177 1696 IINS---EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIAT 1771 (1922)
Q Consensus 1696 ASGS---eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaT 1771 (1922)
+++. .+||..+++.+++++.... --+..||+++++++...-+ +-...+.++|..+.+.+.+
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~---------------~~~~~v~viD~~tl~~~~~ 309 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLN---------------PDADTVQVIDKKTLKVVKT 309 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT----------------SSHT-EEEEECCGTEEEE-
T ss_pred cccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCC---------------CCCceEEEEECcCcceeEE
Confidence 2222 2899999999999985444 6788899999999873211 1235688999999988888
Q ss_pred eccCCc--eEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1772 IPVDRC--VLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1772 idvkr~--I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
+..... +.++.|+++|+++.+...+..+ .+.+|+.
T Consensus 310 i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~----~i~v~D~ 346 (369)
T PF02239_consen 310 ITPGPGKRVVHMEFNPDGKEVWVSVWDGNG----AIVVYDA 346 (369)
T ss_dssp HHHHHT--EEEEEE-TTSSEEEEEEE--TT----EEEEEET
T ss_pred EeccCCCcEeccEECCCCCEEEEEEecCCC----EEEEEEC
Confidence 765444 9999999999988877544422 5666653
No 186
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=5.1e-09 Score=130.71 Aligned_cols=189 Identities=17% Similarity=0.223 Sum_probs=121.1
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec----CCcEEEeccCCCCCCc--ceEeccc-eeEEEcCC
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS----SQDVHLWNASSIAGGP--MHSFEGC-KAARFSNS 1603 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs----DgtVkLWDl~t~~gk~--l~tf~gh-~sVaFSPD 1603 (1922)
..|.+||. .+.....+..+...+.+. .|+|||+.|+..+ ...|.+||+.+ ++. +..+.++ ....|+||
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p--~wSPDG~~la~~s~~~~~~~I~~~dl~~--g~~~~l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISP--AWSPDGTKLAYVSFESKKPVVYVHDLAT--GRRRVVANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccc--eEcCCCCEEEEEEccCCCcEEEEEECCC--CCEEEeecCCCCccceEECCC
Confidence 46777776 455555666777888888 8899999887642 24599999987 443 2234443 67899999
Q ss_pred CCEEEEeecCCCCCeEEEE--ECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcC--CCcc
Q 000177 1604 GNLFAALPTETSDRGILLY--DIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRR--NSVP 1673 (1922)
Q Consensus 1604 G~~LaSgS~~S~DgtIrIW--DlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlr--tgk~ 1673 (1922)
|+.|+... +.++...|| |+.++. ...+.. .........|+|||+.|+..+ .+|.+. +++.
T Consensus 251 G~~la~~~--~~~g~~~Iy~~d~~~~~-~~~lt~-------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 251 GRTLAVAL--SRDGNSQIYTVNADGSG-LRRLTQ-------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred CCEEEEEE--ccCCCceEEEEECCCCC-cEECCC-------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence 99887542 445555555 555444 333430 111122378999999887433 677654 4432
Q ss_pred eeeeccCCC-ceEEEEecCCCEEEEEe--------EEEecCCCeEEEEEcCCCceeEEEccCCCEEEEEEc
Q 000177 1674 VHRFDQFTD-HGGGGFHPAGNEVIINS--------EVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1674 I~kf~gh~~-~VsVaFSPdG~~LASGS--------eIWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~ 1735 (1922)
..+..... .....|+|+|++|+..+ .+||+.+++......+.....+.|+|+|++|+.+..
T Consensus 321 -~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 321 -QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred -EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEe
Confidence 22221122 22689999999998765 288998876543333323368899999999998754
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.13 E-value=1.1e-09 Score=132.23 Aligned_cols=240 Identities=15% Similarity=0.178 Sum_probs=157.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeE---EEe----eecCCCcEEEEecCCcEEEe
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTL---VQS----HLSGETQLLLSSSSQDVHLW 1579 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~Vts---Lq~----afSpDG~lLaSSsDgtVkLW 1579 (1922)
|. ..|.||.|+.+...+.+++.+..++-||+.+.. ...+.-....|.. +.. .-.....++++++||.+.|.
T Consensus 13 ~~-e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 13 NS-EKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred cc-eeEEeecccccceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 55 678899999888777777766666666664332 1111111111111 100 00113357788899999988
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
+-. ++....+..| .+-.|+|+|.-+++. +.||.|+||.- +|-.-.++. ..+..+.+++|.|+
T Consensus 91 ~k~---~rVE~sv~AH~~A~~~gRW~~dGtgLlt~---GEDG~iKiWSr-sGMLRStl~-------Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 91 NKS---ARVERSISAHAAAISSGRWSPDGAGLLTA---GEDGVIKIWSR-SGMLRSTVV-------QNEESIRCARWAPN 156 (737)
T ss_pred ccc---chhhhhhhhhhhhhhhcccCCCCceeeee---cCCceEEEEec-cchHHHHHh-------hcCceeEEEEECCC
Confidence 765 4555666665 677899999999999 99999999974 343333332 13566778999999
Q ss_pred CCeEe-ecc---EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC--ceeEEE
Q 000177 1656 DTMLL-WNG---ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD--QTTITF 1723 (1922)
Q Consensus 1656 G~lLa-Sgg---rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~--~~sVaF 1723 (1922)
.+-++ +.+ .|=-+.....+-++..|.+.+ ++.|+|..+.+++|+ +|||-. |..+.+-..|+ .++|+|
T Consensus 157 S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~ 235 (737)
T KOG1524|consen 157 SNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAF 235 (737)
T ss_pred CCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeee
Confidence 87666 444 444455555566789999988 999999999999999 599986 66666555454 499999
Q ss_pred ccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEe
Q 000177 1724 NARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1724 SPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe 1794 (1922)
+|+. .++.++ .+ +-|+.+| --..|+.++|+++|+.+++..
T Consensus 236 npd~-~~~v~S-~n---------t~R~~~p--------------------~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 236 NPEK-DYLLWS-YN---------TARFSSP--------------------RVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred cccc-ceeeee-ee---------eeeecCC--------------------CccceEEEEEcCCCceeeccc
Confidence 9993 333331 11 1111111 123588999999998887543
No 188
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.11 E-value=2.3e-09 Score=120.59 Aligned_cols=136 Identities=15% Similarity=0.248 Sum_probs=99.9
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEECCC-CCceeeec-cCCCCeeEEEeeecCCCcEEEE--e-cCCcEEE
Q 000177 1514 CITFLGDSSHIAVGSH----------TKELKIFDSNS-SSPLESCT-SHQAPVTLVQSHLSGETQLLLS--S-SSQDVHL 1578 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~----------DGtIkIWDl~t-gk~l~tL~-gHss~VtsLq~afSpDG~lLaS--S-sDgtVkL 1578 (1922)
.+.|+++|++|+.-.. -|...||-++. +.....+. .+.++|.++ +|+|+|+.++. | .+..|.|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~--~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDV--AWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEE--EECcCCCEEEEEEccCCcccEE
Confidence 5778999987654332 23456666632 33344443 234579999 88999987655 3 3779999
Q ss_pred eccCCCCCCcceEecc--ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1579 WNASSIAGGPMHSFEG--CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~g--h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
||++ ++.+.++.. .+.+.|+|+|++|++++.+...|.|.+||+++.+.+.++. ......++|+|+|
T Consensus 88 yd~~---~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---------~~~~t~~~WsPdG 155 (194)
T PF08662_consen 88 YDVK---GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---------HSDATDVEWSPDG 155 (194)
T ss_pred EcCc---ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---------cCcEEEEEEcCCC
Confidence 9997 566777754 3789999999999999776667889999999988887765 1223449999999
Q ss_pred CeEeecc
Q 000177 1657 TMLLWNG 1663 (1922)
Q Consensus 1657 ~lLaSgg 1663 (1922)
+++++..
T Consensus 156 r~~~ta~ 162 (194)
T PF08662_consen 156 RYLATAT 162 (194)
T ss_pred CEEEEEE
Confidence 9999776
No 189
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=5.7e-09 Score=130.30 Aligned_cols=184 Identities=11% Similarity=0.126 Sum_probs=118.9
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE--ecCC
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHT---KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS--SSSQ 1574 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS--SsDg 1574 (1922)
..+.+..|. ..+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+... .|+|||+.|+. +.++
T Consensus 187 ~~~~l~~~~-~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~--~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 187 NAQSALSSP-EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAP--AWSPDGRTLAVALSRDG 262 (427)
T ss_pred CceEeccCC-CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccce--EECCCCCEEEEEEccCC
Confidence 334455677 789999999999999887753 359999998887543 33233445566 89999987764 3477
Q ss_pred cEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEE--ECCCCceeeeeccccccccCCCCcce
Q 000177 1575 DVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLY--DIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIW--DlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
...||.+... +.....+.. .....|+|||++|+.++.. ++...|| |+.+++...... .+....
T Consensus 263 ~~~Iy~~d~~-~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~--~g~~~Iy~~~~~~g~~~~lt~--------~g~~~~ 331 (427)
T PRK02889 263 NSQIYTVNAD-GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDR--GGAPQIYRMPASGGAAQRVTF--------TGSYNT 331 (427)
T ss_pred CceEEEEECC-CCCcEECCCCCCCCcCeEEcCCCCEEEEEecC--CCCcEEEEEECCCCceEEEec--------CCCCcC
Confidence 7666655431 222344432 2568899999998876432 3444555 445544322111 122222
Q ss_pred EEEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1649 QIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
...|+|+|++|+..+ .+||+.+++... +..........|+|||++|+..+
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEE
Confidence 378999999988433 789998876433 32222223789999999998877
No 190
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.10 E-value=5.1e-10 Score=129.69 Aligned_cols=207 Identities=14% Similarity=0.209 Sum_probs=141.4
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceeee---ccCCCCeeEEEeeecCCC
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSSPLESC---TSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~l~tL---~gHss~VtsLq~afSpDG 1565 (1922)
.+.+.+...+....+++|. +.|+.+.|.|+ .++|+++|+|.+||+||+++..++..| .||.+.|.++ .|+++|
T Consensus 117 IrVid~~~~~~~~~~~ghG-~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv--D~~~~g 193 (385)
T KOG1034|consen 117 IRVIDVVSGQCSKNYRGHG-GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV--DFSLDG 193 (385)
T ss_pred EEEEecchhhhccceeccC-ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE--EEcCCC
Confidence 3445566777788899999 99999999994 579999999999999999999999887 7899999999 889999
Q ss_pred cEEEEe-cCCcEEEeccCCCCC----CcceE---------e-------cc------c----eeEEEcCCCCEEEEeecCC
Q 000177 1566 QLLLSS-SSQDVHLWNASSIAG----GPMHS---------F-------EG------C----KAARFSNSGNLFAALPTET 1614 (1922)
Q Consensus 1566 ~lLaSS-sDgtVkLWDl~t~~g----k~l~t---------f-------~g------h----~sVaFSPDG~~LaSgS~~S 1614 (1922)
.+|++| .|.++++|++..... ++... | .. | -|+.|- |+++++= +
T Consensus 194 d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk---s 268 (385)
T KOG1034|consen 194 DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK---S 268 (385)
T ss_pred CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec---c
Confidence 999995 599999999984100 00000 1 00 1 123332 5777776 6
Q ss_pred CCCeEEEEEC-CCCceeeeeccccccccC------CCCcceE--EEEcCCCCeEeecc-----EEEEcCCCccee--eec
Q 000177 1615 SDRGILLYDI-QTYQLEAKLSDTSVNLTG------RGHAYSQ--IHFSPSDTMLLWNG-----ILWDRRNSVPVH--RFD 1678 (1922)
Q Consensus 1615 ~DgtIrIWDl-rTgk~i~tL~d~s~~~~~------~gh~~~v--VaFSPdG~lLaSgg-----rLWDlrtgk~I~--kf~ 1678 (1922)
-++.|..|-. +-++.+....++....+. .....+- .+|.|-+++|+.+. .+||++...+.+ ++.
T Consensus 269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~ 348 (385)
T KOG1034|consen 269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT 348 (385)
T ss_pred cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE
Confidence 6789999987 323333323222211110 1112222 67788889888766 899999876531 221
Q ss_pred cC--CCce-EEEEecCCCEEEEEeE---EEec
Q 000177 1679 QF--TDHG-GGGFHPAGNEVIINSE---VWDL 1704 (1922)
Q Consensus 1679 gh--~~~V-sVaFSPdG~~LASGSe---IWDL 1704 (1922)
.+ ...| ..+|+.+|.+|+.... ||-.
T Consensus 349 ~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 349 HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred eccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 11 1233 7899999998887763 5543
No 191
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=9.1e-09 Score=128.63 Aligned_cols=186 Identities=13% Similarity=0.128 Sum_probs=125.5
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e-c
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSH---TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S-S 1572 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~---DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S-s 1572 (1922)
....+.+..|. ..+.+.+|+|||+.|+..+. +..|.+||+.+++. ..+..+.+.+... .|+|||+.|+. . .
T Consensus 191 g~~~~~lt~~~-~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~--~~SPDG~~la~~~~~ 266 (435)
T PRK05137 191 GANVRYLTDGS-SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAP--RFSPDGRKVVMSLSQ 266 (435)
T ss_pred CCCcEEEecCC-CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCc--EECCCCCEEEEEEec
Confidence 34445567787 88999999999999988764 46899999988765 3455566666777 88999987754 3 3
Q ss_pred CC--cEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1573 SQ--DVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1573 Dg--tVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++ .|.+||+.+ +. ...+.. .....|+|||++|+..+.......|.+||+.+++.. .+.. ....
T Consensus 267 ~g~~~Iy~~d~~~--~~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~-------~~~~ 335 (435)
T PRK05137 267 GGNTDIYTMDLRS--GT-TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF-------GGGR 335 (435)
T ss_pred CCCceEEEEECCC--Cc-eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec-------CCCc
Confidence 44 477788876 33 333432 256899999999988754444457889998766543 3320 1122
Q ss_pred ceEEEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1647 YSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
.....|+|+|++|+... .+||+..+. ...+......-...|+|||++|+..+
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEE
Confidence 23378999999988532 577765443 33333222222789999999887644
No 192
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=6.9e-10 Score=132.37 Aligned_cols=87 Identities=22% Similarity=0.404 Sum_probs=74.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceE
Q 000177 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~t 1591 (1922)
.+++|+++|..|++|+.||++|||++.+...+.....|...|.++ .|+|||++|++ +.| ..+||++++ +.++.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL--~FS~dgk~lasig~d-~~~VW~~~~--g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDL--DFSPDGKFLASIGAD-SARVWSVNT--GAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccc--eeCCCCcEEEEecCC-ceEEEEecc--Cchhhh
Confidence 689999999999999999999999998888888889999999999 99999999999 678 999999998 655555
Q ss_pred ecc------ceeEEEcCCC
Q 000177 1592 FEG------CKAARFSNSG 1604 (1922)
Q Consensus 1592 f~g------h~sVaFSPDG 1604 (1922)
... ...|.|+.++
T Consensus 223 ~t~~~k~~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDN 241 (398)
T ss_pred cCCcccchhhhhceecccC
Confidence 432 2456777665
No 193
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.08 E-value=4.6e-09 Score=124.07 Aligned_cols=195 Identities=19% Similarity=0.268 Sum_probs=131.6
Q ss_pred eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-eEeecc-----EEEEc
Q 000177 1596 KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT-MLLWNG-----ILWDR 1668 (1922)
Q Consensus 1596 ~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~-lLaSgg-----rLWDl 1668 (1922)
..++|+| +...|++| +.|.+|.||++-.+.....+..+.....+|...+..+.|+|.-. .|++.| .+||+
T Consensus 85 LDi~w~PfnD~vIASg---SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 85 LDIDWCPFNDCVIASG---SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred cccccCccCCceeecC---CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence 5689999 56678887 89999999999877665555434433333333344499999875 444555 89999
Q ss_pred CCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEEEEccCch
Q 000177 1669 RNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYAILRRNLE 1739 (1922)
Q Consensus 1669 rtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaSgs~~d~~ 1739 (1922)
.+|..+.+++ |.+.| ++.|+-||.++++.+ +|||.++++++..-.+|.. ..+.|-.+|.++.+|...-++
T Consensus 162 ~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 162 GTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSE 240 (472)
T ss_pred cCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccc
Confidence 9999888887 88877 999999999999999 4999999999998877776 688999999966666433222
Q ss_pred hhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1740 DVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1740 dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
.-.....+..+..| -.+..+| ....|.---|+++-..+-++. ..|+.+|.||+..
T Consensus 241 Rq~aLwdp~nl~eP--~~~~elD-----------tSnGvl~PFyD~dt~ivYl~G-----KGD~~IRYyEit~ 295 (472)
T KOG0303|consen 241 RQIALWDPNNLEEP--IALQELD-----------TSNGVLLPFYDPDTSIVYLCG-----KGDSSIRYFEITN 295 (472)
T ss_pred cceeccCcccccCc--ceeEEec-----------cCCceEEeeecCCCCEEEEEe-----cCCcceEEEEecC
Confidence 21111111122222 1233333 334455555666666666653 2346777777643
No 194
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=2e-08 Score=117.75 Aligned_cols=215 Identities=15% Similarity=0.271 Sum_probs=143.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCc-EEEEecCCcEEEeccCCCC--
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQ-LLLSSSSQDVHLWNASSIA-- 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~-lLaSSsDgtVkLWDl~t~~-- 1585 (1922)
..+..++|++.-..++++..|-+|+|||-.. ++...++ .....|+++ +|-|.+. -|+.+.-+-|.+|......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtcl--awRPlsaselavgCr~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCL--AWRPLSASELAVGCRAGICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEE--EeccCCcceeeeeecceeEEEEcCccccc
Confidence 4577889998777889999999999999765 4444443 345689999 6666543 4555677779999875410
Q ss_pred CCc----------ceEeccc---eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc-ceEEE
Q 000177 1586 GGP----------MHSFEGC---KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA-YSQIH 1651 (1922)
Q Consensus 1586 gk~----------l~tf~gh---~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~-~~vVa 1651 (1922)
+.. +....+| +++.|.+||..+++++. .|..|.|||..++.++.... .+-. ...+.
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~--gsssi~iWdpdtg~~~pL~~--------~glgg~slLk 245 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF--GSSSIMIWDPDTGQKIPLIP--------KGLGGFSLLK 245 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc--CcceEEEEcCCCCCcccccc--------cCCCceeeEE
Confidence 111 1122233 78999999999999854 46889999999988765442 1222 33499
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCC----C----------
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRK----F---------- 1707 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrT----g---------- 1707 (1922)
|||||.+++... ++|......--.++.-..+.+ ..+|+|+|.+|+... .+|.+.- .
T Consensus 246 wSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~ 325 (445)
T KOG2139|consen 246 WSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKR 325 (445)
T ss_pred EcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCccccee
Confidence 999999998665 899544332222333334466 899999999876655 3554321 0
Q ss_pred -eEEEEEc-----------CCCceeEEEccCCCEEEEEEccC
Q 000177 1708 -RLLRSVP-----------SLDQTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1708 -klL~tl~-----------gH~~~sVaFSPdG~~LaSgs~~d 1737 (1922)
.++..++ +....+++|.|.|.+|++.++..
T Consensus 326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 0111111 11225999999999999987644
No 195
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=5e-08 Score=121.57 Aligned_cols=192 Identities=12% Similarity=0.133 Sum_probs=122.5
Q ss_pred cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec-C--CcEEEeccCCCCCCcceEeccc-eeEEEcCCCCE
Q 000177 1532 ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS-S--QDVHLWNASSIAGGPMHSFEGC-KAARFSNSGNL 1606 (1922)
Q Consensus 1532 tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss-D--gtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~ 1606 (1922)
.|.++|.+.++ ...+..|...+... .|+|||+.|+. +. + ..|.+||+.+...+.+..+.++ ....|+|||++
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p--~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSP--RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeee--eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCE
Confidence 47777876444 45555667788888 88999998876 42 2 3689999987222223334443 46899999998
Q ss_pred EEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceeeec
Q 000177 1607 FAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFD 1678 (1922)
Q Consensus 1607 LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~ 1678 (1922)
|+.......+..|.+||+.+++... +.. .........|+|+|+.|+..+ .+||+.+++......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~-lt~-------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~ 328 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSR-VTN-------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF 328 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEE-ccc-------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 8755333334578999999876543 330 111222378999999876433 556776776432221
Q ss_pred cCCCceEEEEecCCCEEEEEe--------EEEecCCCeEEEEEc-CCCceeEEEccCCCEEEEEEc
Q 000177 1679 QFTDHGGGGFHPAGNEVIINS--------EVWDLRKFRLLRSVP-SLDQTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1679 gh~~~VsVaFSPdG~~LASGS--------eIWDLrTgklL~tl~-gH~~~sVaFSPdG~~LaSgs~ 1735 (1922)
.........|+|+|++|+..+ .+||+.+++.. .+. ........|+|+|++|+.+..
T Consensus 329 ~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 329 VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEEEEe
Confidence 111122678999999998766 16788877543 332 222246799999999987743
No 196
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.01 E-value=1.1e-09 Score=133.56 Aligned_cols=177 Identities=15% Similarity=0.232 Sum_probs=130.0
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------CceeeeccCCCCeeEEEeeecCCC-cEEEE-ecCCcEEEe
Q 000177 1510 ALLTCITFLG-DSSHIAVGSHTKELKIFDSNSS-------SPLESCTSHQAPVTLVQSHLSGET-QLLLS-SSSQDVHLW 1579 (1922)
Q Consensus 1510 ~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tg-------k~l~tL~gHss~VtsLq~afSpDG-~lLaS-SsDgtVkLW 1579 (1922)
..|+.+.|.| |...|++++.||.|+||.+..+ .+...+.+|...|++| .|+|-. .+|++ +.|.+|+||
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~sl--RfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSL--RFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEE--EecchhhhHhhhhhccceeeee
Confidence 5699999999 8889999999999999999654 3456789999999999 777742 34555 679999999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce-eeeeccccccccCCCCcceEEEEcC
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL-EAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~-i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
|+.+ .+....|.+| ..++|+|+|+.+++. +.||+|++|..+++.. ++.-+ ...+.....+.|.-
T Consensus 706 Dl~~--~~~~~~l~gHtdqIf~~AWSpdGr~~AtV---cKDg~~rVy~Prs~e~pv~Eg~------gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 706 DLAN--AKLYSRLVGHTDQIFGIAWSPDGRRIATV---CKDGTLRVYEPRSREQPVYEGK------GPVGTRGARILWAC 774 (1012)
T ss_pred ehhh--hhhhheeccCcCceeEEEECCCCcceeee---ecCceEEEeCCCCCCCccccCC------CCccCcceeEEEEe
Confidence 9998 6777788876 689999999999999 8999999999987543 21111 11233444599999
Q ss_pred CCCeEeecc---------EEEEcCC--Ccceeee--ccCCCceEEEEecCCCEEEEEe
Q 000177 1655 SDTMLLWNG---------ILWDRRN--SVPVHRF--DQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1655 dG~lLaSgg---------rLWDlrt--gk~I~kf--~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
+|++++..| .+||..+ +.++.+. +......--.|.+|...|...+
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 999999777 5777664 2344432 2222222345666766555554
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.00 E-value=1.9e-09 Score=130.19 Aligned_cols=177 Identities=12% Similarity=0.146 Sum_probs=134.6
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcE
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDV 1576 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtV 1576 (1922)
..+.-+.+..|. +.|.|-.|+|||.-|+|.+.||.||||. .+|....++-....+|+|+ +|.|+..-++.|..+.+
T Consensus 93 ~~rVE~sv~AH~-~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~--~W~p~S~~vl~c~g~h~ 168 (737)
T KOG1524|consen 93 SARVERSISAHA-AAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA--RWAPNSNSIVFCQGGHI 168 (737)
T ss_pred cchhhhhhhhhh-hhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE--EECCCCCceEEecCCeE
Confidence 445556677899 9999999999999999999999999998 4676666676678899999 78999888888877777
Q ss_pred EEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1577 HLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
.|=.+.. ...+..++.| .++.|++..+.|++| +.|-..+|||... ..+.+- ..+.|.+.+++|
T Consensus 169 ~IKpL~~--n~k~i~WkAHDGiiL~~~W~~~s~lI~sg---GED~kfKvWD~~G-~~Lf~S-------~~~ey~ITSva~ 235 (737)
T KOG1524|consen 169 SIKPLAA--NSKIIRWRAHDGLVLSLSWSTQSNIIASG---GEDFRFKIWDAQG-ANLFTS-------AAEEYAITSVAF 235 (737)
T ss_pred EEeeccc--ccceeEEeccCcEEEEeecCccccceeec---CCceeEEeecccC-cccccC-------Chhccceeeeee
Confidence 7766654 3334455554 789999999999999 8999999999874 332221 236788888999
Q ss_pred cCCCCeEeeccEEEEcCCCcceeeeccCC-Cce-EEEEecCCCEEEEEe
Q 000177 1653 SPSDTMLLWNGILWDRRNSVPVHRFDQFT-DHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1653 SPdG~lLaSggrLWDlrtgk~I~kf~gh~-~~V-sVaFSPdG~~LASGS 1699 (1922)
+|+ +.++.++ ..+- +|...+ +.| .++|||||..++.|+
T Consensus 236 npd-~~~~v~S----~nt~----R~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 236 NPE-KDYLLWS----YNTA----RFSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred ccc-cceeeee----eeee----eecCCCccceEEEEEcCCCceeeccc
Confidence 999 5555443 2221 133332 344 899999999998887
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.00 E-value=3.5e-08 Score=116.48 Aligned_cols=209 Identities=20% Similarity=0.284 Sum_probs=151.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec--CCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS--SQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss--DgtVkLWDl~t~~g 1586 (1922)
..+..+.|+.+...|..|+.||. ++|+...... .+.--.+.+.-|+.-|+.. +++- +. -+.+++++++. .
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk--~ 78 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKK--K 78 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEccc--C
Confidence 45777789999999999999996 8888765544 2222244555555466543 5544 43 34589999886 4
Q ss_pred CcceE--ec-cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC--CCeEee
Q 000177 1587 GPMHS--FE-GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS--DTMLLW 1661 (1922)
Q Consensus 1587 k~l~t--f~-gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd--G~lLaS 1661 (1922)
..+.. |. .+.+|.++. ++|+++ -. ..|.|||+++.+.+.++... ..+....++++|+ +.+++.
T Consensus 79 ~~ICe~~fpt~IL~VrmNr--~RLvV~---Le-e~IyIydI~~MklLhTI~t~------~~n~~gl~AlS~n~~n~ylAy 146 (391)
T KOG2110|consen 79 TTICEIFFPTSILAVRMNR--KRLVVC---LE-ESIYIYDIKDMKLLHTIETT------PPNPKGLCALSPNNANCYLAY 146 (391)
T ss_pred ceEEEEecCCceEEEEEcc--ceEEEE---Ec-ccEEEEecccceeehhhhcc------CCCccceEeeccCCCCceEEe
Confidence 43433 32 246677664 455555 22 34999999999999988621 1244445555554 458884
Q ss_pred cc-------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCCc----eeEEE
Q 000177 1662 NG-------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLDQ----TTITF 1723 (1922)
Q Consensus 1662 gg-------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~~----~sVaF 1723 (1922)
-+ .|||+.+-+++..+..|.+.+ +++|+|+|.+||++| +|+.+.+|+.+..+.-... .+++|
T Consensus 147 p~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred cCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence 33 999999999999999999999 999999999999999 5999999999998873332 69999
Q ss_pred ccCCCEEEEEEccC
Q 000177 1724 NARGDVIYAILRRN 1737 (1922)
Q Consensus 1724 SPdG~~LaSgs~~d 1737 (1922)
+|++++|++++..+
T Consensus 227 s~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 227 SPDSQFLAASSNTE 240 (391)
T ss_pred CCCCCeEEEecCCC
Confidence 99999999886543
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=6.8e-08 Score=123.50 Aligned_cols=275 Identities=13% Similarity=0.168 Sum_probs=174.5
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--C--CceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS--S--SPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t--g--k~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
.|. -.++|.++||+++++++|..||.|.+|.-.. + .....+.=|...|+++ +|+++|.+|++| ..+.+.+|.
T Consensus 203 ~Ht-f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L--~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 203 HHT-FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL--SFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhc-ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee--EEecCCceEeecccceEEEEEe
Confidence 477 6689999999999999999999999997433 1 1224456688999999 999999999995 599999999
Q ss_pred cCCCCCCcceEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccc----ccCCCCcceEEEEcCC
Q 000177 1581 ASSIAGGPMHSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVN----LTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1581 l~t~~gk~l~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~----~~~~gh~~~vVaFSPd 1655 (1922)
+.+...+.+-++.+ +.++.++||+.+.+.. ..|+.|.+....+-....++...... ......-...++++|.
T Consensus 280 ~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~---~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 280 LETGKKQFLPRLGSPILHIVVSPDSDLYSLV---LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred ecCCCcccccccCCeeEEEEEcCCCCeEEEE---ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC
Confidence 99843333444444 5889999999998888 77999999877655444444311111 0001111223889995
Q ss_pred CCeEeecc-----EEEEcCCCcceeeecc-----CCC------ce-EEEEecCCCEEEEEe---------------EEEe
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHRFDQ-----FTD------HG-GGGFHPAGNEVIINS---------------EVWD 1703 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~kf~g-----h~~------~V-sVaFSPdG~~LASGS---------------eIWD 1703 (1922)
-+.++-++ .+||+-+.+.+++++. +.+ .+ .+.++-+|.++++.- ++|.
T Consensus 357 ~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 357 TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred CCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence 55454444 8999998877776632 111 12 567778899999887 3664
Q ss_pred cC----CCeEEEEEc-CCCc---eeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeee--
Q 000177 1704 LR----KFRLLRSVP-SLDQ---TTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI-- 1772 (1922)
Q Consensus 1704 Lr----TgklL~tl~-gH~~---~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi-- 1772 (1922)
.. ++.+...+. .|.. ..+.++|... ..++++ .+..|++|--.+.+.+...
T Consensus 437 ~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~-------------------~dg~~KiW~~~~~~n~~k~~s 497 (792)
T KOG1963|consen 437 YNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS-------------------VDGDFKIWVFTDDSNIYKKSS 497 (792)
T ss_pred EcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec-------------------cCCeEEEEEEecccccCcCcc
Confidence 43 233333332 2333 1222222222 222222 2334555544332222111
Q ss_pred ---------ccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1773 ---------PVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1773 ---------dvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
-.+.++...+|+.+|+.+++. .+.++.+|+-+.
T Consensus 498 ~W~c~~i~sy~k~~i~a~~fs~dGslla~s-------~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 498 NWTCKAIGSYHKTPITALCFSQDGSLLAVS-------FDDTITIWDYDT 539 (792)
T ss_pred ceEEeeeeccccCcccchhhcCCCcEEEEe-------cCCEEEEecCCC
Confidence 136789999999999988865 345677887654
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.99 E-value=2.2e-08 Score=127.35 Aligned_cols=230 Identities=17% Similarity=0.230 Sum_probs=154.2
Q ss_pred ceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCc--eee----eccCCCCeeEEEeeecCCC-cEEE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSP--LES----CTSHQAPVTLVQSHLSGET-QLLL 1569 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~--l~t----L~gHss~VtsLq~afSpDG-~lLa 1569 (1922)
..|-.+|... ..|+|++|+| +..+|+.|..+|.|.+||+..+.. ... ...|..+|+.+.|.-++.+ .++.
T Consensus 233 ~~Pe~~~~~~--s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s 310 (555)
T KOG1587|consen 233 NTPELVLESP--SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFS 310 (555)
T ss_pred CCceEEEecC--CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEE
Confidence 4555656443 6899999999 778999999999999999987655 222 2568899999966444433 3555
Q ss_pred EecCCcEEEeccCCCCCCcce-----Ee-------c---cceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceee--
Q 000177 1570 SSSSQDVHLWNASSIAGGPMH-----SF-------E---GCKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEA-- 1631 (1922)
Q Consensus 1570 SSsDgtVkLWDl~t~~gk~l~-----tf-------~---gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~-- 1631 (1922)
+|.||.|+.|+++.. ..+.. .. . +.++++|.+ +...|+.| +.+|.|.--.-.......
T Consensus 311 ~ssDG~i~~W~~~~l-~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG---Te~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 311 LSSDGSICSWDTDML-SLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG---TEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred EecCCcEeeeecccc-ccchhhcccccccccccccccccceeeEeeccCCCceEEEE---cCCcEEEEEeccCCcccccc
Confidence 578999999988752 11111 11 1 137899999 56778888 778887663322211111
Q ss_pred eeccccccccCCCCcceEEEEcCCCCeEe-ecc----EEEEcC-CCcceeeeccCCCce-EEEEecCCCEEEEEe-----
Q 000177 1632 KLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG----ILWDRR-NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1632 tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg----rLWDlr-tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS----- 1699 (1922)
.++ +......+...+.++.++|-+..++ +++ +||.-. ...++..|..+...+ +++|||.-.-+....
T Consensus 387 ~~~-~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 387 SYK-GHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred ccc-ccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence 111 0111111233445589999885544 555 999988 677888888888877 999999876544443
Q ss_pred -EEEecCC--CeEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1700 -EVWDLRK--FRLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1700 -eIWDLrT--gklL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
.|||+.. ..++.+.+-... +.+.|++.|++|+.|.
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd 505 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD 505 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEEec
Confidence 4999975 344555543333 7999999999999983
No 201
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.98 E-value=7.2e-09 Score=118.62 Aligned_cols=185 Identities=13% Similarity=0.228 Sum_probs=129.5
Q ss_pred CceeeEEec-CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-eeee-----ccCCCCeeEEEeeecCCCcEEE
Q 000177 1497 RFRPWRTCR-DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP-LESC-----TSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1497 rfrpirtLr-gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~-l~tL-----~gHss~VtsLq~afSpDG~lLa 1569 (1922)
.+..+..|. .|- +.|.|+.|.|++..|++-. |..|.+|+++.+.. +..+ .+|....++-.|+.+.+++.++
T Consensus 111 tlE~v~~Ldteav-g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 111 TLECVASLDTEAV-GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred hhhHhhcCCHHHh-CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence 344444454 466 7899999999999998876 88999999987765 3322 2355666777444445899999
Q ss_pred EecCCcEEEeccCCCCCCcceEecc-----ceeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccC
Q 000177 1570 SSSSQDVHLWNASSIAGGPMHSFEG-----CKAARFSNSGN-LFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1570 SSsDgtVkLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~ 1642 (1922)
+..|+++..||+++ .++...+.. ++.+.|+|+-+ +|++| +.|+.|+|||.+.-+ .++.+. .
T Consensus 189 tt~d~tl~~~D~RT--~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~---gDdgyvriWD~R~tk~pv~el~-------~ 256 (370)
T KOG1007|consen 189 TTSDSTLQFWDLRT--MKKNNSIEDAHGQRVRDLDFNPNKQHILVTC---GDDGYVRIWDTRKTKFPVQELP-------G 256 (370)
T ss_pred EeCCCcEEEEEccc--hhhhcchhhhhcceeeeccCCCCceEEEEEc---CCCccEEEEeccCCCccccccC-------C
Confidence 99999999999998 555555543 37899999865 56666 889999999998643 444443 3
Q ss_pred CCCcceEEEEcCCC-CeEeecc-----EEEEcCCC-----------------------------cceeeeccCCCce-EE
Q 000177 1643 RGHAYSQIHFSPSD-TMLLWNG-----ILWDRRNS-----------------------------VPVHRFDQFTDHG-GG 1686 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG-~lLaSgg-----rLWDlrtg-----------------------------k~I~kf~gh~~~V-sV 1686 (1922)
+.|=++.+.|+|.- ++|+++| .+|...+- ..+.+|+.|.+.| ++
T Consensus 257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~ 336 (370)
T KOG1007|consen 257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL 336 (370)
T ss_pred CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence 44555669999964 6677777 55554321 1234666777777 77
Q ss_pred EEecCCCEE
Q 000177 1687 GFHPAGNEV 1695 (1922)
Q Consensus 1687 aFSPdG~~L 1695 (1922)
+||.-..++
T Consensus 337 aWSsadPWi 345 (370)
T KOG1007|consen 337 AWSSADPWI 345 (370)
T ss_pred eeccCCCee
Confidence 777665554
No 202
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=5.3e-09 Score=122.11 Aligned_cols=184 Identities=20% Similarity=0.276 Sum_probs=127.0
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC--CCcEEEE-ecCCcEEEeccCCCCCCcceEeccc---
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG--ETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC--- 1595 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp--DG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh--- 1595 (1922)
..+|++-..|+|++||..+++.+..|++|...++.+ .|.. ....+.+ ++||+|++||++.........+..+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~v--rf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGV--RFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccce--EEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 579999999999999999999999999999999999 4544 3455555 5699999999998433444555544
Q ss_pred --eeEEEcCCCCEEEEeecC-CCCCeEEEEECCCCce-eeeeccccccccCCCCcceEEEEcCCC-CeEeecc-----EE
Q 000177 1596 --KAARFSNSGNLFAALPTE-TSDRGILLYDIQTYQL-EAKLSDTSVNLTGRGHAYSQIHFSPSD-TMLLWNG-----IL 1665 (1922)
Q Consensus 1596 --~sVaFSPDG~~LaSgS~~-S~DgtIrIWDlrTgk~-i~tL~d~s~~~~~~gh~~~vVaFSPdG-~lLaSgg-----rL 1665 (1922)
.+++.+-.++.+++|..- ..+-.|.+||+|..+. +..+. ..|...+..+.|+|.+ ++|++++ .|
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~------eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl 192 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN------ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL 192 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh------hhccCcceeEEecCCCCCeEEeecccceEEe
Confidence 344444456667666221 2467799999998766 55554 1233344559999987 5666776 89
Q ss_pred EEcCCCc----ceeeeccCCCce-EEEEecCC-CEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1666 WDRRNSV----PVHRFDQFTDHG-GGGFHPAG-NEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1666 WDlrtgk----~I~kf~gh~~~V-sVaFSPdG-~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
||+.... +++++ .+...| ++.|+.++ +.|.+-+ .+|++..+.....+.
T Consensus 193 fD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 193 FDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred eecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 9988542 23333 444556 88999888 2344444 499998876544443
No 203
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.97 E-value=1.2e-08 Score=117.06 Aligned_cols=217 Identities=17% Similarity=0.320 Sum_probs=148.8
Q ss_pred CCCCCCEEEEEEcCCCC-----EEEEEeCCCcEEEEECCCC--Cc--eeee-----ccCCCCeeEEEeeecC-CCcEEEE
Q 000177 1506 DDAGALLTCITFLGDSS-----HIAVGSHTKELKIFDSNSS--SP--LESC-----TSHQAPVTLVQSHLSG-ETQLLLS 1570 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~-----lLASGS~DGtIkIWDl~tg--k~--l~tL-----~gHss~VtsLq~afSp-DG~lLaS 1570 (1922)
.|. -+++.+-|.|+.. +|||.+ -.+++|.+... +. ...+ ..|..++++. .|+. +-++|.+
T Consensus 94 d~~-YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSF--DWne~dp~~igt 168 (364)
T KOG0290|consen 94 DHP-YPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSF--DWNEVDPNLIGT 168 (364)
T ss_pred CCC-CCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccc--ccccCCcceeEe
Confidence 577 8999999999763 566654 47999998632 11 1111 3456788888 4443 4567777
Q ss_pred ec-CCcEEEeccCCC-CCCcceEecc----ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeec-cccccccC
Q 000177 1571 SS-SQDVHLWNASSI-AGGPMHSFEG----CKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLS-DTSVNLTG 1642 (1922)
Q Consensus 1571 Ss-DgtVkLWDl~t~-~gk~l~tf~g----h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~-d~s~~~~~ 1642 (1922)
|+ |.+..|||+++. .+.....+-. +..++|...+ +.|+++ +.||.|++||++.-..-..+. ++.
T Consensus 169 SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv---gaDGSvRmFDLR~leHSTIIYE~p~----- 240 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASV---GADGSVRMFDLRSLEHSTIIYEDPS----- 240 (364)
T ss_pred ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEe---cCCCcEEEEEecccccceEEecCCC-----
Confidence 66 999999999982 1222334433 4889999965 578888 899999999999755433332 111
Q ss_pred CCCcceEEEEcCCCC-eEee---cc---EEEEcCCC-cceeeeccCCCce-EEEEecCC-CEEEEEeE-----EEecCCC
Q 000177 1643 RGHAYSQIHFSPSDT-MLLW---NG---ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAG-NEVIINSE-----VWDLRKF 1707 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~-lLaS---gg---rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG-~~LASGSe-----IWDLrTg 1707 (1922)
.....-.++|++++. ++++ ++ .+.|+|.. .++.++.+|...| .++|.|.. ..|++++. |||+.+-
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 012333488888774 4443 23 89999975 5899999999999 99999974 68888883 9999752
Q ss_pred e------EEEEE-cCCCceeEEEcc-CCCEEEEEEc
Q 000177 1708 R------LLRSV-PSLDQTTITFNA-RGDVIYAILR 1735 (1922)
Q Consensus 1708 k------lL~tl-~gH~~~sVaFSP-dG~~LaSgs~ 1735 (1922)
- ++-.+ .++..+.+.|++ .+++|+.++.
T Consensus 321 ~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 321 PRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 1 12222 345558999996 5678887743
No 204
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=5.6e-08 Score=122.36 Aligned_cols=191 Identities=17% Similarity=0.226 Sum_probs=119.8
Q ss_pred cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-c-CC--cEEEeccCCCCCCcceEeccc-eeEEEcCCCCE
Q 000177 1532 ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-S-SQ--DVHLWNASSIAGGPMHSFEGC-KAARFSNSGNL 1606 (1922)
Q Consensus 1532 tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-s-Dg--tVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~ 1606 (1922)
.|.++|.+..+. +.+..+...+.+. .|+|||+.|+.. . ++ .|.+||+.+...+.+..+.++ ....|+|||+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p--~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSP--AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCc--eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCE
Confidence 567777654433 4555566778888 889999988763 2 33 588889876212223334443 56899999998
Q ss_pred EEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceee-e
Q 000177 1607 FAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHR-F 1677 (1922)
Q Consensus 1607 LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~k-f 1677 (1922)
|+..........|.+||+.+++... +.. ........+|+|+|+.|+..+ .++|+.+++.... +
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~-lt~-------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTR-ITR-------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEE-Ccc-------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec
Confidence 8765322223358888998876533 320 112223388999999887433 5567766654322 2
Q ss_pred ccCCCceEEEEecCCCEEEEEe------EE--EecCCCeEEEEEcCC-CceeEEEccCCCEEEEEEc
Q 000177 1678 DQFTDHGGGGFHPAGNEVIINS------EV--WDLRKFRLLRSVPSL-DQTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1678 ~gh~~~VsVaFSPdG~~LASGS------eI--WDLrTgklL~tl~gH-~~~sVaFSPdG~~LaSgs~ 1735 (1922)
.+.. .....|+|+|++|+..+ +| +|+.+++.. .+... ......|+|+|++|+....
T Consensus 348 ~g~~-~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 348 EGEQ-NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred CCCC-CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEEe
Confidence 2222 23679999999988765 24 577776543 23322 2246689999999887643
No 205
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=6.3e-08 Score=121.86 Aligned_cols=207 Identities=10% Similarity=0.075 Sum_probs=129.8
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e-cCCc-
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHT-K--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S-SSQD- 1575 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~D-G--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S-sDgt- 1575 (1922)
+.+..+. ..+.+..|||||++|+..+.+ + .|.+||+.+++... +.......... .|+|||+.|+. . .++.
T Consensus 211 ~~l~~~~-~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~--~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 211 QMLLRSP-EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAP--RFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred eEeecCC-CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCe--eECCCCCEEEEEEeCCCCe
Confidence 3445555 678899999999998876643 2 58899998876532 22112233455 88999997765 3 3554
Q ss_pred -EEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEE
Q 000177 1576 -VHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1576 -VkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
|.+||+.+ ++ +..+.. .....|+|||++|+..+.......|.++|+.+++...... .++.....
T Consensus 287 ~Iy~~dl~t--g~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--------~g~~~~~~ 355 (448)
T PRK04792 287 EIYVVDIAT--KA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--------EGEQNLGG 355 (448)
T ss_pred EEEEEECCC--CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--------CCCCCcCe
Confidence 77778876 43 233322 2668999999998877543344567888888776533211 12223337
Q ss_pred EEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE--------EEecCCCeEEEEEc
Q 000177 1651 HFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE--------VWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1651 aFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe--------IWDLrTgklL~tl~ 1714 (1922)
+|+|+|++|+..+ .++|+.+++.. .+..........|+|||++|+..+. +++. +++..+.++
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~ 433 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP 433 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc
Confidence 8999999887543 44677777542 2322211225689999999887661 3454 355555555
Q ss_pred CCCc--eeEEEcc
Q 000177 1715 SLDQ--TTITFNA 1725 (1922)
Q Consensus 1715 gH~~--~sVaFSP 1725 (1922)
.+.. ...+|+|
T Consensus 434 ~~~g~~~~p~Wsp 446 (448)
T PRK04792 434 AGQGEVKSPAWSP 446 (448)
T ss_pred CCCCCcCCCccCC
Confidence 4322 5667776
No 206
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.97 E-value=1.6e-08 Score=113.82 Aligned_cols=132 Identities=20% Similarity=0.344 Sum_probs=94.8
Q ss_pred eEEEeeecCCCcEEEE-ec---CC-------cEEEeccCCCCCCcceEe--c---cceeEEEcCCCCEEEEeecCCCCCe
Q 000177 1555 TLVQSHLSGETQLLLS-SS---SQ-------DVHLWNASSIAGGPMHSF--E---GCKAARFSNSGNLFAALPTETSDRG 1618 (1922)
Q Consensus 1555 tsLq~afSpDG~lLaS-Ss---Dg-------tVkLWDl~t~~gk~l~tf--~---gh~sVaFSPDG~~LaSgS~~S~Dgt 1618 (1922)
..+.+.|+++|.+|+. .. |. ...||-++.. ..++..+ . .+..++|+|+|+.|+... +..++.
T Consensus 7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~-~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~ 84 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK-NIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAK 84 (194)
T ss_pred ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC-CCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcc
Confidence 3444488999988876 21 22 3555655331 2233332 1 168999999999887652 245679
Q ss_pred EEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEec
Q 000177 1619 ILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHP 1690 (1922)
Q Consensus 1619 IrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSP 1690 (1922)
|.+||++ ++.+.++. ....+.+.|+|+|++|+.+| .+||+++.+.+.++. |.....+.|+|
T Consensus 85 v~lyd~~-~~~i~~~~---------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~~~t~~~WsP 153 (194)
T PF08662_consen 85 VTLYDVK-GKKIFSFG---------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HSDATDVEWSP 153 (194)
T ss_pred cEEEcCc-ccEeEeec---------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cCcEEEEEEcC
Confidence 9999997 66666664 34566799999999999765 799999988888775 33455999999
Q ss_pred CCCEEEEEe
Q 000177 1691 AGNEVIINS 1699 (1922)
Q Consensus 1691 dG~~LASGS 1699 (1922)
+|++|++++
T Consensus 154 dGr~~~ta~ 162 (194)
T PF08662_consen 154 DGRYLATAT 162 (194)
T ss_pred CCCEEEEEE
Confidence 999999987
No 207
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.96 E-value=7.4e-08 Score=118.80 Aligned_cols=192 Identities=19% Similarity=0.247 Sum_probs=124.8
Q ss_pred CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec----CCcEEEeccCCCCCCc--ceEecc-ceeEEEcC
Q 000177 1530 TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS----SQDVHLWNASSIAGGP--MHSFEG-CKAARFSN 1602 (1922)
Q Consensus 1530 DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs----DgtVkLWDl~t~~gk~--l~tf~g-h~sVaFSP 1602 (1922)
...|.++|... ...+.+..+...+... .|+|||++|+... ...|++||+.+ ++. +..+.+ ..++.|+|
T Consensus 169 ~~~l~~~d~~g-~~~~~l~~~~~~~~~p--~~Spdg~~la~~~~~~~~~~i~v~d~~~--g~~~~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 169 RYELQVADYDG-ANPQTITRSREPILSP--AWSPDGQKLAYVSFESGKPEIYVQDLAT--GQREKVASFPGMNGAPAFSP 243 (417)
T ss_pred cceEEEEcCCC-CCCEEeecCCCceecc--cCCCCCCEEEEEEcCCCCcEEEEEECCC--CCEEEeecCCCCccceEECC
Confidence 34677888753 3445566677778888 8999999988742 24799999987 432 222333 25689999
Q ss_pred CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcce
Q 000177 1603 SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPV 1674 (1922)
Q Consensus 1603 DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I 1674 (1922)
+|+.|+.......+..|++||+.+++...... .........|+|+|+.|+..+ .+||+.+++.
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~--------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~- 314 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN--------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV- 314 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEEECCC--------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence 99988765333334569999998876433221 111122368999999877433 5567666653
Q ss_pred eeeccCCCce-EEEEecCCCEEEEEe------E--EEecCCCeEEEEEcCCC-ceeEEEccCCCEEEEEEcc
Q 000177 1675 HRFDQFTDHG-GGGFHPAGNEVIINS------E--VWDLRKFRLLRSVPSLD-QTTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1675 ~kf~gh~~~V-sVaFSPdG~~LASGS------e--IWDLrTgklL~tl~gH~-~~sVaFSPdG~~LaSgs~~ 1736 (1922)
..+..+.... ...|+|+|++|+..+ + +||+.++.. ..+.... .....|+|+|++|+.....
T Consensus 315 ~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 315 RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeC
Confidence 3343333333 789999999998876 2 778876543 3333222 2567899999999887543
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.96 E-value=2.1e-09 Score=128.89 Aligned_cols=204 Identities=15% Similarity=0.232 Sum_probs=166.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceE
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~t 1591 (1922)
-+.+.|+.+|++|+.|+.-|.|-.+|+.+++....+.. ...|.++ .|-.+.++++......+.|||-. |..++.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv--~~LHneq~~AVAQK~y~yvYD~~---GtElHC 205 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDV--TFLHNEQFFAVAQKKYVYVYDNN---GTELHC 205 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhh--hhhcchHHHHhhhhceEEEecCC---CcEEee
Confidence 45688999999999999999999999999988777653 4668888 66778889999989999999986 455555
Q ss_pred ec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----
Q 000177 1592 FE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----- 1663 (1922)
Q Consensus 1592 f~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----- 1663 (1922)
++ .+..+.|-|..-.|+++ +..|.++.-|+.+|+.+..+.. ......+++-+|-+-.+-.+.
T Consensus 206 lk~~~~v~rLeFLPyHfLL~~~---~~~G~L~Y~DVS~GklVa~~~t-------~~G~~~vm~qNP~NaVih~GhsnGtV 275 (545)
T KOG1272|consen 206 LKRHIRVARLEFLPYHFLLVAA---SEAGFLKYQDVSTGKLVASIRT-------GAGRTDVMKQNPYNAVIHLGHSNGTV 275 (545)
T ss_pred hhhcCchhhhcccchhheeeec---ccCCceEEEeechhhhhHHHHc-------cCCccchhhcCCccceEEEcCCCceE
Confidence 54 45789999998888887 7889999999999999887751 122334477777777666555
Q ss_pred EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC-CCceeEEEccCCCEEE
Q 000177 1664 ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS-LDQTTITFNARGDVIY 1731 (1922)
Q Consensus 1664 rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g-H~~~sVaFSPdG~~La 1731 (1922)
.+|...+..++.++..|.+.+ ++++.++|.|+++.+ +|||++++..+.++.. |....++||..|-..+
T Consensus 276 SlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~ 350 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLAL 350 (545)
T ss_pred EecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceee
Confidence 899999999999999999999 999999999999999 6999999988877765 5558899998874433
No 209
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.96 E-value=4.9e-09 Score=128.11 Aligned_cols=184 Identities=18% Similarity=0.221 Sum_probs=139.2
Q ss_pred eeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCc--e----eeeccCCCCeeEEEeeecCCC-cEEEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSP--L----ESCTSHQAPVTLVQSHLSGET-QLLLS 1570 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~--l----~tL~gHss~VtsLq~afSpDG-~lLaS 1570 (1922)
+.+..|.+|. +.|+.+.|+| +..+|+|||.|..||||.+..|.. + ..+.+..-.|-++ .|+|.. .++++
T Consensus 70 r~i~~l~~H~-d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l--~fHpTaDgil~s 146 (1012)
T KOG1445|consen 70 RDIGILAAHG-DQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECL--RFHPTADGILAS 146 (1012)
T ss_pred cccceeeccc-ceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEe--ecccCcCceEEe
Confidence 3455677899 9999999999 667999999999999999975422 1 2233345567788 566643 46777
Q ss_pred ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCC
Q 000177 1571 SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh 1645 (1922)
+.-++++|||+.+ ++.+..+.+| .+..|+.||+.+++. ..|+.|+|||.++ +..+++.. +|
T Consensus 147 ~a~g~v~i~D~st--qk~~~el~~h~d~vQSa~WseDG~llats---cKdkqirifDPRa~~~piQ~te---------~H 212 (1012)
T KOG1445|consen 147 GAHGSVYITDIST--QKTAVELSGHTDKVQSADWSEDGKLLATS---CKDKQIRIFDPRASMEPIQTTE---------GH 212 (1012)
T ss_pred ccCceEEEEEccc--CceeecccCCchhhhccccccCCceEeee---cCCcceEEeCCccCCCcccccc---------cc
Confidence 8899999999998 8888888886 678999999999998 8999999999986 34444443 45
Q ss_pred cce---EEEEcCCCCeEeecc---------EEEEcCCC-cceeeeccC--CCceEEEEecCCCEEEEEe
Q 000177 1646 AYS---QIHFSPSDTMLLWNG---------ILWDRRNS-VPVHRFDQF--TDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1646 ~~~---vVaFSPdG~lLaSgg---------rLWDlrtg-k~I~kf~gh--~~~VsVaFSPdG~~LASGS 1699 (1922)
... .+.|--+-..|++.| ++||.+.. .+++++.-. .+..--.|.||.+.|+.++
T Consensus 213 ~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG 281 (1012)
T KOG1445|consen 213 GGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG 281 (1012)
T ss_pred ccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec
Confidence 443 388887777788777 89999864 566665433 2333567899988888777
No 210
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.1e-08 Score=125.40 Aligned_cols=183 Identities=13% Similarity=0.184 Sum_probs=128.3
Q ss_pred eeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEecc---ceeEEEcCCCC--EEEEeecCCCCCe
Q 000177 1545 ESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGN--LFAALPTETSDRG 1618 (1922)
Q Consensus 1545 ~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~--~LaSgS~~S~Dgt 1618 (1922)
..|.||++.|.+| +..|.|.+|++|+ ||+|+||.+.+ +.|++++.- +.||+|+|.++ .|+++ ....
T Consensus 394 lvyrGHtg~Vr~i--Svdp~G~wlasGsdDGtvriWEi~T--gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA----~~~~ 465 (733)
T KOG0650|consen 394 LVYRGHTGLVRSI--SVDPSGEWLASGSDDGTVRIWEIAT--GRCVRTVQFDSEIRSVAWNPLSDLCVLAVA----VGEC 465 (733)
T ss_pred eeEeccCCeEEEE--EecCCcceeeecCCCCcEEEEEeec--ceEEEEEeecceeEEEEecCCCCceeEEEE----ecCc
Confidence 4578999999999 8899999999965 99999999999 999987653 59999999765 33333 2223
Q ss_pred EEEEECCCCcee---------eeec---cc-----cccc-------------cCCCCcceEEEEcCCCCeEeecc-----
Q 000177 1619 ILLYDIQTYQLE---------AKLS---DT-----SVNL-------------TGRGHAYSQIHFSPSDTMLLWNG----- 1663 (1922)
Q Consensus 1619 IrIWDlrTgk~i---------~tL~---d~-----s~~~-------------~~~gh~~~vVaFSPdG~lLaSgg----- 1663 (1922)
+.|-+..-|..+ .... .+ .+.. ..+...+..+.|+..|.||++..
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 444443323111 1110 00 0000 00222334499999999999654
Q ss_pred ---EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1664 ---ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1664 ---rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
.|+++...+...-|....+.+ ++.|||...++++++ +|||+-...+++.+..... ..++.+|.|..|+.+
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 788888776666676655666 999999999999998 5999988777666553333 689999999999988
Q ss_pred Ec
Q 000177 1734 LR 1735 (1922)
Q Consensus 1734 s~ 1735 (1922)
+.
T Consensus 626 s~ 627 (733)
T KOG0650|consen 626 SY 627 (733)
T ss_pred cC
Confidence 53
No 211
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=6.6e-08 Score=120.45 Aligned_cols=183 Identities=10% Similarity=0.042 Sum_probs=121.4
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-e-cCC-
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHT---KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-S-SSQ- 1574 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-S-sDg- 1574 (1922)
.+.+..|. ..+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+... .|+|||+.|+. . .++
T Consensus 191 ~~~l~~~~-~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~--~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 191 AVTLLQSR-EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAP--AWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred ceEEecCC-CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCe--EECCCCCEEEEEEccCCC
Confidence 44555666 788999999999999877644 368999998886533 32223334455 88999998764 3 244
Q ss_pred -cEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1575 -DVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1575 -tVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
.|.+||+.+ +. ...+.. .....|+|||+.|+..+.......|.+||+.+++...... .+.....
T Consensus 267 ~~Iy~~d~~~--~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--------~~~~~~~ 335 (430)
T PRK00178 267 PEIYVMDLAS--RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--------VGNYNAR 335 (430)
T ss_pred ceEEEEECCC--CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--------CCCCccc
Confidence 688889886 33 233332 2567899999988877443344578888988877533221 1222234
Q ss_pred EEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1650 IHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
..|+|+|++|+... .+||+.+++. ..+..........|+|||++|+..+
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYAT 392 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEE
Confidence 78999999987433 5788887754 3332211222679999999998766
No 212
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=7.9e-08 Score=108.21 Aligned_cols=201 Identities=13% Similarity=0.126 Sum_probs=136.2
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc------e--eeeccCC-----CCeeEEEeeecCC-C
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP------L--ESCTSHQ-----APVTLVQSHLSGE-T 1565 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~------l--~tL~gHs-----s~VtsLq~afSpD-G 1565 (1922)
++..+++|. ++|+.++|. ..+|++|+. |.|+=|..+.... + .....|. ..|+++ ...|. +
T Consensus 54 ~iv~eqahd-gpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam--~ldP~en 127 (325)
T KOG0649|consen 54 KIVPEQAHD-GPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAM--WLDPSEN 127 (325)
T ss_pred ceeeccccC-CCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCcccee--EeccCCC
Confidence 455668999 999999998 457777775 9999998753221 1 1112233 356777 55654 5
Q ss_pred cEEEEecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc
Q 000177 1566 QLLLSSSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1566 ~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
.+|.++.|+.++-||+++ ++..++|+|| +++.--.....+++| +.||+++|||.+|++++..+..-.-...
T Consensus 128 Si~~AgGD~~~y~~dlE~--G~i~r~~rGHtDYvH~vv~R~~~~qilsG---~EDGtvRvWd~kt~k~v~~ie~yk~~~~ 202 (325)
T KOG0649|consen 128 SILFAGGDGVIYQVDLED--GRIQREYRGHTDYVHSVVGRNANGQILSG---AEDGTVRVWDTKTQKHVSMIEPYKNPNL 202 (325)
T ss_pred cEEEecCCeEEEEEEecC--CEEEEEEcCCcceeeeeeecccCcceeec---CCCccEEEEeccccceeEEeccccChhh
Confidence 566678999999999998 8889999998 455553334557888 8999999999999999998863211111
Q ss_pred CCC-CcceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1642 GRG-HAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1642 ~~g-h~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
.+. ...++.+..-+..+++.++ .+|.+++..+...|.-....--+.|-. ..+++++ .-|.+. |.+-.
T Consensus 203 lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a 279 (325)
T KOG0649|consen 203 LRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQA 279 (325)
T ss_pred cCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccceeeeeec-cEEEE
Confidence 122 2344567777888999888 899999998887775433322566654 3455554 256553 44444
Q ss_pred EEc
Q 000177 1712 SVP 1714 (1922)
Q Consensus 1712 tl~ 1714 (1922)
.++
T Consensus 280 ~ip 282 (325)
T KOG0649|consen 280 NIP 282 (325)
T ss_pred ecc
Confidence 444
No 213
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.5e-08 Score=118.47 Aligned_cols=234 Identities=14% Similarity=0.193 Sum_probs=152.1
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCcee--eeccCC-CCeeEEEeeecCC
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSSSPLE--SCTSHQ-APVTLVQSHLSGE 1564 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tgk~l~--tL~gHs-s~VtsLq~afSpD 1564 (1922)
.+-|...+++.+..|++|. ..++.++|.. .+..+.+|+.||+|++||+.+..... .+.+|. .+-.++ ..+-.
T Consensus 52 v~lyd~~tg~~l~~fk~~~-~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~l--d~nck 128 (376)
T KOG1188|consen 52 VRLYDKGTGQLLEEFKGPP-ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICL--DLNCK 128 (376)
T ss_pred EEEEeccchhhhheecCCC-CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEe--eccCc
Confidence 3445566777888899998 8899999987 46689999999999999998776544 446665 344555 55557
Q ss_pred CcEEEEe-----cCCcEEEeccCCCCCCcceEecc-----ceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1565 TQLLLSS-----SSQDVHLWNASSIAGGPMHSFEG-----CKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1565 G~lLaSS-----sDgtVkLWDl~t~~gk~l~tf~g-----h~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
++++++| ++-.|.+||++. ..+++..+.. ++++.||| +.++|++| +-||.|.|||+........+
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~-~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG---SvDGLvnlfD~~~d~EeDaL 204 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRS-EQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG---SVDGLVNLFDTKKDNEEDAL 204 (376)
T ss_pred CCeEEeccccccCceEEEEEEecc-ccchhhhhhhhccCcceeEEecCCCCCeEEee---cccceEEeeecCCCcchhhH
Confidence 7888886 367899999997 2333555532 48999999 56899998 99999999999864321111
Q ss_pred ccccccccCCCCcceEEEEcCCC--CeEeecc----EEEEcCCCcceeeeccCCC------------ceEEEEec-CCCE
Q 000177 1634 SDTSVNLTGRGHAYSQIHFSPSD--TMLLWNG----ILWDRRNSVPVHRFDQFTD------------HGGGGFHP-AGNE 1694 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~vVaFSPdG--~lLaSgg----rLWDlrtgk~I~kf~gh~~------------~VsVaFSP-dG~~ 1694 (1922)
. ....++..+..+.|..++ ++..-.. .+|++..+.+...+....- .+--..+| ++..
T Consensus 205 ~----~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 205 L----HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred H----HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 1 111134445558898887 4332111 8999999887666543311 11112223 2333
Q ss_pred EEEEe------E---EEecCCC---eEEEEEcCCCc---eeEEEccCCCEEEEEE
Q 000177 1695 VIINS------E---VWDLRKF---RLLRSVPSLDQ---TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1695 LASGS------e---IWDLrTg---klL~tl~gH~~---~sVaFSPdG~~LaSgs 1734 (1922)
.++++ . +-+..++ +.+..+.++.. .++.|...+.+++++.
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG 335 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG 335 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC
Confidence 33333 1 2233333 33444555333 6888888899999984
No 214
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.89 E-value=1.2e-07 Score=117.00 Aligned_cols=183 Identities=13% Similarity=0.126 Sum_probs=123.1
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec-C--
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHT---KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS-S-- 1573 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss-D-- 1573 (1922)
.+.+..|. ..+.+.+|+|||++|+.++.+ ..|++||+.+++... +..+...+.++ .|+|||+.|+. .+ +
T Consensus 182 ~~~l~~~~-~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~--~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 182 PQTITRSR-EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAP--AFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred CEEeecCC-CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccce--EECCCCCEEEEEECCCCC
Confidence 45555666 678999999999999887754 479999998876533 33455566667 88999987654 32 3
Q ss_pred CcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
..|++||+.+ +. ...+.. .....|+|+|++|+.++.......|.+||+.+++...... .+.....
T Consensus 258 ~~i~~~d~~~--~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~--------~~~~~~~ 326 (417)
T TIGR02800 258 PDIYVMDLDG--KQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF--------RGGYNAS 326 (417)
T ss_pred ccEEEEECCC--CC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--------CCCCccC
Confidence 4688999876 33 222322 2467899999998876443334478888988766433221 1233334
Q ss_pred EEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1650 IHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
..|+|+|++++..+ .+||+.++.. ..+..........|+|+|++|+..+
T Consensus 327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYAT 383 (417)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEE
Confidence 88999999888543 6788877543 3332222223678999999998776
No 215
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.89 E-value=2.1e-08 Score=117.06 Aligned_cols=192 Identities=20% Similarity=0.325 Sum_probs=133.6
Q ss_pred CCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCC-----------------------------------ceeee-ccCC
Q 000177 1510 ALLTCITFLGDSS--HIAVGSHTKELKIFDSNSSS-----------------------------------PLESC-TSHQ 1551 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~--lLASGS~DGtIkIWDl~tgk-----------------------------------~l~tL-~gHs 1551 (1922)
..|..+.|.++++ .++..+.|.+|++|.+.... +.+.+ .+|+
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4578899998665 67888899999999874211 11233 5789
Q ss_pred CCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceE--ecc---------ceeEEEcCC-CCEEEEeecCCCCCeE
Q 000177 1552 APVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHS--FEG---------CKAARFSNS-GNLFAALPTETSDRGI 1619 (1922)
Q Consensus 1552 s~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~t--f~g---------h~sVaFSPD-G~~LaSgS~~S~DgtI 1619 (1922)
.-|++| +++.|...+++++|=.|.||++.... +.... ++. +++..|||. .+.|+.. +..|+|
T Consensus 165 yhiNSI--S~NsD~Et~lSADdLRINLWnlei~d-~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS---SSKGtI 238 (433)
T KOG1354|consen 165 YHINSI--SVNSDKETFLSADDLRINLWNLEIID-QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS---SSKGTI 238 (433)
T ss_pred eEeeee--eecCccceEeeccceeeeeccccccC-CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe---cCCCcE
Confidence 999999 89999999999999999999997621 11111 111 378999995 5667766 778999
Q ss_pred EEEECCCCceee----eec---cccccccCCC--CcceEEEEcCCCCeEeecc----EEEEcC-CCcceeeeccCC----
Q 000177 1620 LLYDIQTYQLEA----KLS---DTSVNLTGRG--HAYSQIHFSPSDTMLLWNG----ILWDRR-NSVPVHRFDQFT---- 1681 (1922)
Q Consensus 1620 rIWDlrTgk~i~----tL~---d~s~~~~~~g--h~~~vVaFSPdG~lLaSgg----rLWDlr-tgk~I~kf~gh~---- 1681 (1922)
++.|++...... .+. ++.....+.+ ..+..+.|+++|+++++-. ++||+. ..+++.+++-|.
T Consensus 239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHH
Confidence 999999533211 111 1111100000 1122399999999999888 999995 567888887653
Q ss_pred --------Cce----EEEEecCCCEEEEEe-----EEEecCCC
Q 000177 1682 --------DHG----GGGFHPAGNEVIINS-----EVWDLRKF 1707 (1922)
Q Consensus 1682 --------~~V----sVaFSPdG~~LASGS-----eIWDLrTg 1707 (1922)
+.| -++|+-++.++++|+ +++++..|
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 223 689999999999999 57775544
No 216
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=7.8e-07 Score=109.65 Aligned_cols=276 Identities=14% Similarity=0.127 Sum_probs=181.1
Q ss_pred CEEEEEEcCCCCEEEE-------EeC---CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEec
Q 000177 1511 LLTCITFLGDSSHIAV-------GSH---TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWN 1580 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLAS-------GS~---DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWD 1580 (1922)
.++++.|||.|++|.| +.. .-.+++|++.++.....+......-+++ .|+.|..+.+--..+.|++|+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~--qfs~dEsl~arlv~nev~f~~ 152 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVP--QFSIDESLAARLVSNEVQFYD 152 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCccc--ccccchhhhhhhhcceEEEEe
Confidence 4789999999999875 111 2357899999966555554333333677 778887766555677899999
Q ss_pred cCCCCCCcceEe--ccceeEEEcCCC--CEEEEe--ecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC
Q 000177 1581 ASSIAGGPMHSF--EGCKAARFSNSG--NLFAAL--PTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1581 l~t~~gk~l~tf--~gh~sVaFSPDG--~~LaSg--S~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
... .....+.+ .++....++|.+ .++++= ..++.-..++||-......-..+. ...+-....-.+.|++
T Consensus 153 ~~~-f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a----~ksFFkadkvqm~WN~ 227 (566)
T KOG2315|consen 153 LGS-FKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVA----NKSFFKADKVQMKWNK 227 (566)
T ss_pred cCC-ccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhh----hccccccceeEEEecc
Confidence 976 23333444 345778888863 233321 123456789999876322211111 1111112222388888
Q ss_pred CCCeEe--ecc---------------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-------EEEecCCCeE
Q 000177 1655 SDTMLL--WNG---------------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-------EVWDLRKFRL 1709 (1922)
Q Consensus 1655 dG~lLa--Sgg---------------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-------eIWDLrTgkl 1709 (1922)
-|.-|+ +.+ ++.++....+.-.+.+ .++| ++.|+|+|+.+++.- .|+|++ +.+
T Consensus 228 ~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~ 305 (566)
T KOG2315|consen 228 LGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKP 305 (566)
T ss_pred CCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCE
Confidence 776443 111 5555552233333322 4566 999999998777665 499997 889
Q ss_pred EEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCce
Q 000177 1710 LRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSF 1789 (1922)
Q Consensus 1710 L~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~ 1789 (1922)
+..++....+++-|||.|++|+.+...| +...+.+||..+++.|+.++.... .-+.|+|+|.+
T Consensus 306 v~df~egpRN~~~fnp~g~ii~lAGFGN----------------L~G~mEvwDv~n~K~i~~~~a~~t-t~~eW~PdGe~ 368 (566)
T KOG2315|consen 306 VFDFPEGPRNTAFFNPHGNIILLAGFGN----------------LPGDMEVWDVPNRKLIAKFKAANT-TVFEWSPDGEY 368 (566)
T ss_pred eEeCCCCCccceEECCCCCEEEEeecCC----------------CCCceEEEeccchhhccccccCCc-eEEEEcCCCcE
Confidence 9999877779999999999999775444 456788999999999999887544 34789999999
Q ss_pred EEEEecCCCCCccceEEEEEecC
Q 000177 1790 VGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1790 LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+.+..-...--.|+.++||...-
T Consensus 369 flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 369 FLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEEeccccEEecCCeEEEEecC
Confidence 88775332233467788987643
No 217
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=4.2e-07 Score=111.28 Aligned_cols=275 Identities=13% Similarity=0.148 Sum_probs=181.4
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCCceeeecc--CCCCeeEEEeeecCCCcEEEEec
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHT-----------KELKIFDSNSSSPLESCTS--HQAPVTLVQSHLSGETQLLLSSS 1572 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~D-----------GtIkIWDl~tgk~l~tL~g--Hss~VtsLq~afSpDG~lLaSSs 1572 (1922)
.|. .|..+.|||+.+||+|=|.. ..++|||+.+|...++|.. ....++.+ |.||-|+++++.-.
T Consensus 248 ~Hp--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~-frWS~DdKy~Arm~ 324 (698)
T KOG2314|consen 248 YHP--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPI-FRWSHDDKYFARMT 324 (698)
T ss_pred cCC--CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccce-EEeccCCceeEEec
Confidence 365 58999999999999997632 4689999999999998876 45566666 48999999999866
Q ss_pred CCcEEEeccCCCCCCcc----eEeccceeEEEcCCCCEEEEeecCCCC--CeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1573 SQDVHLWNASSIAGGPM----HSFEGCKAARFSNSGNLFAALPTETSD--RGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l----~tf~gh~sVaFSPDG~~LaSgS~~S~D--gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
-.+|.||+..+ ..++ ..+.|+....|+|.++.|+.=.....+ ..+.+-.+-+++.+.+-. .-+.
T Consensus 325 ~~sisIyEtps--f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n--------lfnV 394 (698)
T KOG2314|consen 325 GNSISIYETPS--FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN--------LFNV 394 (698)
T ss_pred cceEEEEecCc--eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc--------ceee
Confidence 67889998765 2211 234577889999999888765322221 346666777766665543 0122
Q ss_pred ce-EEEEcCCCCeEeec----------c-----EEEEcCCCc-ceeeeccCCCceEEEEecCCCEEEEEe--------EE
Q 000177 1647 YS-QIHFSPSDTMLLWN----------G-----ILWDRRNSV-PVHRFDQFTDHGGGGFHPAGNEVIINS--------EV 1701 (1922)
Q Consensus 1647 ~~-vVaFSPdG~lLaSg----------g-----rLWDlrtgk-~I~kf~gh~~~VsVaFSPdG~~LASGS--------eI 1701 (1922)
.. .+.|-.+|.+|..- | .|+.++... ++....-....+..+|-|.|+.+++-+ .+
T Consensus 395 sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsf 474 (698)
T KOG2314|consen 395 SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSF 474 (698)
T ss_pred eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeE
Confidence 22 28888888888722 2 455555443 444444334444889999998776655 37
Q ss_pred EecCC----CeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC--CCceeeeeccC
Q 000177 1702 WDLRK----FRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI--NYSDIATIPVD 1775 (1922)
Q Consensus 1702 WDLrT----gklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~--dys~IaTidvk 1775 (1922)
|.+.+ .+++..+.....+.|.|+|.|++++.+.... ....+..+|.. +++.++..+ .
T Consensus 475 Y~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s----------------~~g~l~F~D~~~a~~k~~~~~e-h 537 (698)
T KOG2314|consen 475 YAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS----------------RRGDLEFYDTDYADLKDTASPE-H 537 (698)
T ss_pred EEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecc----------------cccceEEEecchhhhhhccCcc-c
Confidence 77662 3456666654448999999999999873211 22345556544 344333322 3
Q ss_pred CceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1776 RCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1776 r~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
.....+.|+|.|+|+.....-..-..+..-+||..
T Consensus 538 ~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 538 FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred cccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 34678899999999876653333344566777765
No 218
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.87 E-value=3.3e-08 Score=112.42 Aligned_cols=274 Identities=13% Similarity=0.115 Sum_probs=174.7
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCcEEEEecCCcEEE
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQLLLSSSSQDVHL 1578 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~lLaSSsDgtVkL 1578 (1922)
|..+|++|. +.|+|+.|..++. |++|..-|.|++|++++......+. .|...|+.+ ...|+++++.-+.|..+.+
T Consensus 6 P~fvLRp~~-~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~l--q~~p~d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 6 PFFVLRPHS-SSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNL--QSIPNDSLDTQGRDPLLIL 81 (323)
T ss_pred CeeEecccc-chheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeece--eecCCcchhhcCCCceEEE
Confidence 455788999 9999999998775 9999999999999999998888887 678899999 5567766666699999999
Q ss_pred eccCCCCCCcceEeccceeEEEcC-----CCC----EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1579 WNASSIAGGPMHSFEGCKAARFSN-----SGN----LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~gh~sVaFSP-----DG~----~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
|++.-.....++++- .+++.|.+ .++ .++.-+ .+.|. +++-|......+....++. .+....+
T Consensus 82 w~ia~s~~i~i~Si~-~nslgFCrfSl~~~~k~~eqll~yp~-rgsde-~h~~D~g~~tqv~i~dd~~-----~~Klgsv 153 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIV-VNSLGFCRFSLVKKPKNSEQLLEYPS-RGSDE-THKQDGGDTTQVQIADDSE-----RSKLGSV 153 (323)
T ss_pred EEccCcceEEEeeee-ccccccccceeccCCCcchhheecCC-cccch-hhhhccCccceeEccCchh-----ccccCce
Confidence 999751111122221 14444433 221 122211 11222 3333433322222222111 1233333
Q ss_pred EEEc---CCC-CeEeecc------EEEEcCCC----------cceeeeccCCCce-EEEEecCCCEEEEEe-----EEEe
Q 000177 1650 IHFS---PSD-TMLLWNG------ILWDRRNS----------VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWD 1703 (1922)
Q Consensus 1650 VaFS---PdG-~lLaSgg------rLWDlrtg----------k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWD 1703 (1922)
+++. .++ ..++..| .+||+.++ +.+..+..|.+.+ ++.|.+.-..=++|+ -.|+
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence 4444 123 3444444 89999997 3344455677777 888887655555555 1565
Q ss_pred cCC--CeE----EEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CC
Q 000177 1704 LRK--FRL----LRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DR 1776 (1922)
Q Consensus 1704 LrT--gkl----L~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr 1776 (1922)
+.. +.+ ..+++......+.+-||+++++++. ++..+|++.-.+..+++.... +.
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG-------------------WD~RiRVyswrtl~pLAVLkyHsa 294 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG-------------------WDHRIRVYSWRTLNPLAVLKYHSA 294 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccCCcEEeecc-------------------cCCcEEEEEeccCCchhhhhhhhc
Confidence 542 221 2233333337899999999999873 345577888788888887766 45
Q ss_pred ceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1777 CVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1777 ~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
.|.+++|+|+-..+|.. .+|+.+.+|++
T Consensus 295 gvn~vAfspd~~lmAaa------skD~rISLWkL 322 (323)
T KOG0322|consen 295 GVNAVAFSPDCELMAAA------SKDARISLWKL 322 (323)
T ss_pred ceeEEEeCCCCchhhhc------cCCceEEeeec
Confidence 69999999998877744 45678888864
No 219
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.87 E-value=3.5e-09 Score=132.94 Aligned_cols=199 Identities=19% Similarity=0.357 Sum_probs=143.3
Q ss_pred cccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcE
Q 000177 1488 RRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1488 r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
+.++.|...+.....+++||. +.|+.++.+.+..+++++|.|..|++|-+.++.++..+.||++.|++| +|+|--
T Consensus 212 ~lvKiwS~et~~~lAs~rGhs-~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtai--afsP~~-- 286 (1113)
T KOG0644|consen 212 RLVKIWSMETARCLASCRGHS-GDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAI--AFSPRA-- 286 (1113)
T ss_pred ceeeeeeccchhhhccCCCCc-cccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeee--ccCccc--
Confidence 445555566777888999999 999999999999999999999999999999999999999999999999 788864
Q ss_pred EEEecCCcEEEeccCCCC------------CCcceE--ec--------c--------c--eeEEEcCCCCEEEEeecC--
Q 000177 1568 LLSSSSQDVHLWNASSIA------------GGPMHS--FE--------G--------C--KAARFSNSGNLFAALPTE-- 1613 (1922)
Q Consensus 1568 LaSSsDgtVkLWDl~t~~------------gk~l~t--f~--------g--------h--~sVaFSPDG~~LaSgS~~-- 1613 (1922)
.++.||++++||.+-.. +..+.. |. + | ..++|..+.-.|++.+.+
T Consensus 287 -sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~ 365 (1113)
T KOG0644|consen 287 -SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLS 365 (1113)
T ss_pred -cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccc
Confidence 55779999999998200 000000 00 0 0 122333333333332111
Q ss_pred ------CCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ecc-----EEEEcCCCcceeeec-cC
Q 000177 1614 ------TSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG-----ILWDRRNSVPVHRFD-QF 1680 (1922)
Q Consensus 1614 ------S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg-----rLWDlrtgk~I~kf~-gh 1680 (1922)
-.+..+++|++-+|+..+.+. ++.+...++.|+|-+..++ +.| .|||+-.|.+++.+. +|
T Consensus 366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~-------ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh 438 (1113)
T KOG0644|consen 366 SIVVTARNDHRLCVWNLYTGQLLHNLM-------GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH 438 (1113)
T ss_pred ccceeeeeeeEeeeeecccchhhhhhc-------ccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc
Confidence 245667888888887776654 3445566699999887776 444 899999999887765 44
Q ss_pred CCceEEEEecCCCEEEEEe
Q 000177 1681 TDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1681 ~~~VsVaFSPdG~~LASGS 1699 (1922)
...+...||++|..++..-
T Consensus 439 ~kl~d~kFSqdgts~~lsd 457 (1113)
T KOG0644|consen 439 GKLVDGKFSQDGTSIALSD 457 (1113)
T ss_pred ceeeccccCCCCceEecCC
Confidence 4455899999998877655
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.2e-07 Score=112.53 Aligned_cols=249 Identities=16% Similarity=0.171 Sum_probs=176.9
Q ss_pred CCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCCceee------eccCCCCeeEEEeeecCCCcEEEEecCCcEEEecc
Q 000177 1510 ALLTCITFLGDSS--HIAVGSHTKELKIFDSNSSSPLES------CTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNA 1581 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~--lLASGS~DGtIkIWDl~tgk~l~t------L~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl 1581 (1922)
..|+.++|..+++ .|.-.+.|..+.++.+..+.+... ....+.+|..+ .. .|+.++++-++|.+.+|..
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl--~~-~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGL--KL-ADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccch--hh-cCCEEEEEecCCcEEEEec
Confidence 5678888886655 555555777788877766554433 34456777777 33 2666666668999999999
Q ss_pred CCCC--CCcceEec---cceeEEEcCCCCEEE-EeecCCCC--CeEEEEECCCCceeeeeccccccccCCCCcceE----
Q 000177 1582 SSIA--GGPMHSFE---GCKAARFSNSGNLFA-ALPTETSD--RGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ---- 1649 (1922)
Q Consensus 1582 ~t~~--gk~l~tf~---gh~sVaFSPDG~~La-SgS~~S~D--gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v---- 1649 (1922)
..+. ..++..+. +...+.-++....|+ +| +.. ..++|||+.+.+.+.+-+ +..+...+-.+++
T Consensus 133 k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~G---Gke~~n~lkiwdle~~~qiw~aK--NvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATG---GKENINELKIWDLEQSKQIWSAK--NVPNDRLGLRVPVWITD 207 (412)
T ss_pred cCCccccccceeeecCCceeeeccCCCCCceEecC---chhcccceeeeecccceeeeecc--CCCCccccceeeeeecc
Confidence 8422 22333332 335566666544444 45 666 789999999886555443 3332223333333
Q ss_pred EEEcCC--CCeEeecc-----EEEEcCCC-cceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEE-Ec
Q 000177 1650 IHFSPS--DTMLLWNG-----ILWDRRNS-VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRS-VP 1714 (1922)
Q Consensus 1650 VaFSPd--G~lLaSgg-----rLWDlrtg-k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~t-l~ 1714 (1922)
+.|-+. ...|+++. ++||.+.+ +|+.+|+-....+ ++...|.|++|++|. ..+|+++++++.. +.
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k 287 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK 287 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC
Confidence 888887 77888777 99999976 4899999888888 899999999999998 3899999998877 66
Q ss_pred CCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcC
Q 000177 1715 SLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATER 1785 (1922)
Q Consensus 1715 gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SP 1785 (1922)
+... .++..+|++++++++. ++.-+|++|..+.+.+..+-++..++.+-+.+
T Consensus 288 g~tGsirsih~hp~~~~las~G-------------------LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~ 341 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCG-------------------LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRD 341 (412)
T ss_pred CccCCcceEEEcCCCceEEeec-------------------cceeEEEeecccchhhhhhhhhccccEEEecC
Confidence 6655 7999999999999884 34457888988888888877777776665544
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.85 E-value=1.3e-06 Score=107.74 Aligned_cols=271 Identities=13% Similarity=0.156 Sum_probs=153.1
Q ss_pred EEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc---ceeEE
Q 000177 1524 IAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG---CKAAR 1599 (1922)
Q Consensus 1524 LASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g---h~sVa 1599 (1922)
+++-..++.|.|.|..+.+.+.++......-..+ .|+|||+++.. +.|+.|.+||+.+ .+.+.++.. ..+++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~--~~s~Dgr~~yv~~rdg~vsviD~~~--~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGL--KFSPDGRYLYVANRDGTVSVIDLAT--GKVVATIKVGGNPRGIA 84 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEE--E-TT-SSEEEEEETTSEEEEEETTS--SSEEEEEE-SSEEEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEE--EecCCCCEEEEEcCCCeEEEEECCc--ccEEEEEecCCCcceEE
Confidence 3556678999999999999999997554433345 78999998877 5699999999998 777777753 47899
Q ss_pred EcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ec---cEEE--EcCCCcc
Q 000177 1600 FSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WN---GILW--DRRNSVP 1673 (1922)
Q Consensus 1600 FSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sg---grLW--Dlrtgk~ 1673 (1922)
+++||++++++. ...+.+.++|.++.+.+++++...............+..+|....++ +- +.+| |....+.
T Consensus 85 ~s~DG~~~~v~n--~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 85 VSPDGKYVYVAN--YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp E--TTTEEEEEE--EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EcCCCCEEEEEe--cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 999999998873 45789999999999999988622111111111222356677777444 32 2777 5444443
Q ss_pred e--eeeccCCCceEEEEecCCCEEEEEe------EEEecCCCeEEEEEcCC----CceeE-EEccCCCEEEEEEccCchh
Q 000177 1674 V--HRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSL----DQTTI-TFNARGDVIYAILRRNLED 1740 (1922)
Q Consensus 1674 I--~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH----~~~sV-aFSPdG~~LaSgs~~d~~d 1740 (1922)
+ ..+..........|+|+|+|++.+. -++|..+++.+..+... ..... --+|..-.+.+..... ..
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~-~~ 241 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLG-YF 241 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSS-SS
T ss_pred cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccc-ce
Confidence 3 3333333333899999999988876 38999999888766421 11111 1233321222211111 00
Q ss_pred hhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1741 VMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1741 v~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
....+ -.....+++..+++.+.+++....-.-+..+|+++++.+-..-..+ ...+.+++..
T Consensus 242 ~~~~i--------g~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~--~~~v~viD~~ 302 (369)
T PF02239_consen 242 AIPLI--------GTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPD--ADTVQVIDKK 302 (369)
T ss_dssp EEEEE--------E--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SS--HT-EEEEECC
T ss_pred ecccc--------cCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCC--CceEEEEECc
Confidence 00000 0011124566778888888886665888999999999875211111 3566777653
No 222
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.81 E-value=3.5e-08 Score=114.47 Aligned_cols=161 Identities=16% Similarity=0.197 Sum_probs=117.4
Q ss_pred eecCCCcEEEEecCCcEEEeccCCCCCCcceEe---ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1560 HLSGETQLLLSSSSQDVHLWNASSIAGGPMHSF---EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1560 afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf---~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
+|||+|+++++..+..+.|-|..+ -+..+.| ..+..+.|.-+.-+++++ -..|+.|.+|++....-..++.
T Consensus 15 ~fSp~g~yiAs~~~yrlviRd~~t--lq~~qlf~cldki~yieW~ads~~ilC~--~yk~~~vqvwsl~Qpew~ckId-- 88 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRYRLVIRDSET--LQLHQLFLCLDKIVYIEWKADSCHILCV--AYKDPKVQVWSLVQPEWYCKID-- 88 (447)
T ss_pred eECCCCCeeeeeeeeEEEEeccch--hhHHHHHHHHHHhhheeeeccceeeeee--eeccceEEEEEeecceeEEEec--
Confidence 689999999999888999999887 4443333 345789999998887776 2678899999999877666664
Q ss_pred cccccCCCCcc-eEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEeE--------
Q 000177 1637 SVNLTGRGHAY-SQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINSE-------- 1700 (1922)
Q Consensus 1637 s~~~~~~gh~~-~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGSe-------- 1700 (1922)
.|... ..++|||+|+.++..+ .+|.+.+.+..+.- -....+ .++|+|+|++.++.++
T Consensus 89 ------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 89 ------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred ------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCceeeeeecccHHHHHH
Confidence 23333 3399999998877665 79999987765422 222233 8999999999999994
Q ss_pred EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1701 VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1701 IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
|..-....+++.+.-.+. +.+.|+|||.+|+.-
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw 196 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW 196 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe
Confidence 222223344555553333 899999999999875
No 223
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.81 E-value=1.1e-06 Score=107.30 Aligned_cols=276 Identities=14% Similarity=0.085 Sum_probs=182.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCC---------------cEEEEECCCCCceeeeccCCCC--ee-EEEeeecCCCcEEEEec
Q 000177 1511 LLTCITFLGDSSHIAVGSHTK---------------ELKIFDSNSSSPLESCTSHQAP--VT-LVQSHLSGETQLLLSSS 1572 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DG---------------tIkIWDl~tgk~l~tL~gHss~--Vt-sLq~afSpDG~lLaSSs 1572 (1922)
.|..+.|||.+++|.|=+..+ .+.|||+.+|..+.++.+-..+ .+ -+ .|+-+.++++--.
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~--k~s~~D~y~ARvv 150 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVL--KFSIDDKYVARVV 150 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCccccccee--eeeecchhhhhhc
Confidence 589999999999999865443 4999999999999999877666 55 55 5677877776644
Q ss_pred CCcEEEeccCC-CCCCcceEe--ccceeEEEcCCC--CEEEEe--ecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1573 SQDVHLWNASS-IAGGPMHSF--EGCKAARFSNSG--NLFAAL--PTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1573 DgtVkLWDl~t-~~gk~l~tf--~gh~sVaFSPDG--~~LaSg--S~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
...++|+++.. ....+...+ .++....|+|.+ ..|+.= -..+.+.+++||.+..+..+.+-. ...-
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-------lfk~ 223 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-------LFKV 223 (561)
T ss_pred cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-------eEee
Confidence 55688888622 112233333 345778889853 333332 123577899999998666554432 0112
Q ss_pred cceEEEEcCCCCeEeecc----------------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-------EE
Q 000177 1646 AYSQIHFSPSDTMLLWNG----------------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-------EV 1701 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg----------------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-------eI 1701 (1922)
....+.|++.|++++.-- .|++++ ++-+..-....+.| ..+|.|.++.+++.+ .+
T Consensus 224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~ 302 (561)
T COG5354 224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSV 302 (561)
T ss_pred cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec-ccccceeccccccceeeeecccCCceeEEecccccceee
Confidence 333389999998876211 566666 33333332446677 999999998777766 38
Q ss_pred EecCCCeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEE
Q 000177 1702 WDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDF 1781 (1922)
Q Consensus 1702 WDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dL 1781 (1922)
+|++ +.+...++....+.+.|||.+++++.+..++ +...+.+|+..+.-.+.+.-...+..-.
T Consensus 303 ~~lr-~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~n----------------l~gni~i~~~~~rf~~~~~~~~~n~s~~ 365 (561)
T COG5354 303 FDLR-GNLRFYFPEQKRNTIFFSPHERYILFAGFDN----------------LQGNIEIFDPAGRFKVAGAFNGLNTSYC 365 (561)
T ss_pred cccc-cceEEecCCcccccccccCcccEEEEecCCc----------------cccceEEeccCCceEEEEEeecCCceEe
Confidence 9998 4477777766668999999999999874333 3344555554443333322223345567
Q ss_pred EEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1782 ATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1782 a~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
.|+|++.|+-+.--......|..+.||+++..
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 89999998775532223345788999998643
No 224
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.78 E-value=2.7e-07 Score=107.58 Aligned_cols=182 Identities=16% Similarity=0.207 Sum_probs=132.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---ceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCC-C
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS---PLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASS-I 1584 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk---~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t-~ 1584 (1922)
.+|+|.+|++|++.+|++-....|.||.....+ ...+++.|...|+.| .|+|..+.|++| .|..-+||.... .
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgv--dWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGV--DWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEE--eecCCCCceeEccCCCCccccccCCCC
Confidence 689999999999999999999999999987654 567889999999999 789998888885 599999999843 2
Q ss_pred CCCcceEec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1585 AGGPMHSFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1585 ~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
..++...+. ..+++.|+|.++.|++| +.-+.|.||=.+..+-...-+ . ........+.++.|+|++-+++
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVg---Sgar~isVcy~E~ENdWWVsK-h--ikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVG---SGARLISVCYYEQENDWWVSK-H--IKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEec---cCccEEEEEEEecccceehhh-h--hCCccccceeeeeccCCcceec
Confidence 223322222 24899999999999999 667888888776543321110 0 0000124456699999999999
Q ss_pred ecc-----EEEE-----cCC-------------CcceeeeccCCCce-EEEEecCCCEEEEEe
Q 000177 1661 WNG-----ILWD-----RRN-------------SVPVHRFDQFTDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1661 Sgg-----rLWD-----lrt-------------gk~I~kf~gh~~~V-sVaFSPdG~~LASGS 1699 (1922)
+++ ++|. +.. |+.+..+....+++ .+.|+|+|..|+-.+
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence 777 3333 221 23445555455677 999999999998666
No 225
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=7.4e-07 Score=114.27 Aligned_cols=246 Identities=12% Similarity=0.126 Sum_probs=159.4
Q ss_pred cccCCccccccceeee--cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEE
Q 000177 1480 TYSGVHRNRRDRQFVY--SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLV 1557 (1922)
Q Consensus 1480 ~~Gg~~g~r~dr~fi~--srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsL 1557 (1922)
..+..+|....|+-.. ..--..+.|.-|. ..|++++|+++|.+|++|+..|.+.+|.+.+++ .+-+.--.++|..+
T Consensus 221 Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~-~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i 298 (792)
T KOG1963|consen 221 AAGDSDGRILVWRDFGSSDDSETCTLLHWHH-DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHI 298 (792)
T ss_pred EEeccCCcEEEEeccccccccccceEEEecc-cccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEE
Confidence 3444555544444323 1112345677788 899999999999999999999999999999988 33445567899999
Q ss_pred EeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc---------------ceeEEEcCCCCEEEEeecCCCCCeEEE
Q 000177 1558 QSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG---------------CKAARFSNSGNLFAALPTETSDRGILL 1621 (1922)
Q Consensus 1558 q~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g---------------h~sVaFSPDG~~LaSgS~~S~DgtIrI 1621 (1922)
.+|||+.+.+. ..|+.|.+....+ .....++.+ .+.++++|-.+.++.. +.-+.|.+
T Consensus 299 --~vS~ds~~~sl~~~DNqI~li~~~d--l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln---~~~g~vQ~ 371 (792)
T KOG1963|consen 299 --VVSPDSDLYSLVLEDNQIHLIKASD--LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN---GHPGHVQF 371 (792)
T ss_pred --EEcCCCCeEEEEecCceEEEEeccc--hhhhhhccCccCCCccccccccccceeEEEcCCCCceeec---CCCceEEE
Confidence 88999998877 5799999988755 222222222 2567888965666666 77899999
Q ss_pred EECCCCceeeeeccccccc-cCC-CCcceE--EEEcCCCCeEeecc---------------EEEEcCCCc----ceeeec
Q 000177 1622 YDIQTYQLEAKLSDTSVNL-TGR-GHAYSQ--IHFSPSDTMLLWNG---------------ILWDRRNSV----PVHRFD 1678 (1922)
Q Consensus 1622 WDlrTgk~i~tL~d~s~~~-~~~-gh~~~v--VaFSPdG~lLaSgg---------------rLWDlrtgk----~I~kf~ 1678 (1922)
||+-+...+..+.....+. .+. .+.+.+ ++.+..|.+++|.- ++|-..... ...++.
T Consensus 372 ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~ 451 (792)
T KOG1963|consen 372 YDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKIN 451 (792)
T ss_pred EeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEe
Confidence 9999888777664111111 011 122222 66677788888665 788765432 223333
Q ss_pred -cCCCce-EEEE-ecCCC-EEEEEe-----EEEecCCC------------eEEEEEcCCCceeEEEccCCCEEEEEE
Q 000177 1679 -QFTDHG-GGGF-HPAGN-EVIINS-----EVWDLRKF------------RLLRSVPSLDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1679 -gh~~~V-sVaF-SPdG~-~LASGS-----eIWDLrTg------------klL~tl~gH~~~sVaFSPdG~~LaSgs 1734 (1922)
.|...+ ..+| +|... ..++++ +||-+... +.+..+.....+..+|+.||..|+.+.
T Consensus 452 ~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~ 528 (792)
T KOG1963|consen 452 NPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF 528 (792)
T ss_pred cCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec
Confidence 344433 4444 44333 666765 69987321 123333333347999999999998874
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=8.5e-07 Score=104.56 Aligned_cols=211 Identities=18% Similarity=0.310 Sum_probs=136.0
Q ss_pred CCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC----Cc----------eeeeccCCCCeeEEEeeecCCCcEEEEec--
Q 000177 1510 ALLTCITFLGD-SSHIAVGSHTKELKIFDSNSS----SP----------LESCTSHQAPVTLVQSHLSGETQLLLSSS-- 1572 (1922)
Q Consensus 1510 ~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tg----k~----------l~tL~gHss~VtsLq~afSpDG~lLaSSs-- 1572 (1922)
..|+|++|-|. ++-|+.|...| |.||..... .. +....|| .+|+++ .|.+||..+++++
T Consensus 141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsm--qwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSM--QWNEDGTILVTASFG 216 (445)
T ss_pred cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEE--EEcCCCCEEeecccC
Confidence 57999999994 45677776655 899987421 11 1223566 789999 7799999999964
Q ss_pred CCcEEEeccCCCCCCcceE--eccceeEEEcCCCCEEEEeecCCCCCeEEEEECC-CCceeeeeccccccccCCCCcceE
Q 000177 1573 SQDVHLWNASSIAGGPMHS--FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQ-TYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~t--f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr-Tgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
|..|.|||..+....++.. +.+..-+.|||||.+|.++ +-|+..++|... +..+..-.. +.+ .+..
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA---t~davfrlw~e~q~wt~erw~l-------gsg-rvqt 285 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA---TCDAVFRLWQENQSWTKERWIL-------GSG-RVQT 285 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe---cccceeeeehhcccceecceec-------cCC-ceee
Confidence 8899999999844444442 2346789999999999998 889999999543 333322221 123 4445
Q ss_pred EEEcCCCCeEeecc----EEEEcCCCc-c--------------eeee------cc---CCCce-EEEEecCCCEEEEEeE
Q 000177 1650 IHFSPSDTMLLWNG----ILWDRRNSV-P--------------VHRF------DQ---FTDHG-GGGFHPAGNEVIINSE 1700 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg----rLWDlrtgk-~--------------I~kf------~g---h~~~V-sVaFSPdG~~LASGSe 1700 (1922)
.+|+|+|+.|+... .+|.+.... + +..+ .+ ..+.. +++|.|.|.++++.-|
T Consensus 286 acWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred eeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 99999999877322 666655211 0 1111 11 01223 7899999999998763
Q ss_pred -------------EEecCCCeEEEEEc-----CCCceeEEEcc---CCCEEEEEEc
Q 000177 1701 -------------VWDLRKFRLLRSVP-----SLDQTTITFNA---RGDVIYAILR 1735 (1922)
Q Consensus 1701 -------------IWDLrTgklL~tl~-----gH~~~sVaFSP---dG~~LaSgs~ 1735 (1922)
+||.+..-.+.-.. +....-++|+| +|.+|..+|.
T Consensus 366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs 421 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWS 421 (445)
T ss_pred CCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEec
Confidence 67776543333221 11124666666 4666666654
No 227
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=1.4e-07 Score=121.28 Aligned_cols=235 Identities=14% Similarity=0.150 Sum_probs=143.1
Q ss_pred cceeeecCceeeEEecCCC--CCCEEEEEEcC--CCCEEEEEeCCCcEEEEECC-CC----Cceeee---ccCC---CCe
Q 000177 1490 DRQFVYSRFRPWRTCRDDA--GALLTCITFLG--DSSHIAVGSHTKELKIFDSN-SS----SPLESC---TSHQ---APV 1554 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~--d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~-tg----k~l~tL---~gHs---s~V 1554 (1922)
.+.|.+.+.+....|..+. ...|+.+.+-. |..+|++|+.||.||||+-. ++ +.+..+ .++. ...
T Consensus 1088 i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~ 1167 (1387)
T KOG1517|consen 1088 IRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT 1167 (1387)
T ss_pred EEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC
Confidence 3334444444444443321 25688888876 56699999999999999742 21 222222 2221 111
Q ss_pred eEEEeeecCC-CcEEEEecCCcEEEeccCCCCCCcceEecc-----ceeEEEc-CCCCEEEEeecCCCCCeEEEEECCCC
Q 000177 1555 TLVQSHLSGE-TQLLLSSSSQDVHLWNASSIAGGPMHSFEG-----CKAARFS-NSGNLFAALPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1555 tsLq~afSpD-G~lLaSSsDgtVkLWDl~t~~gk~l~tf~g-----h~sVaFS-PDG~~LaSgS~~S~DgtIrIWDlrTg 1627 (1922)
..+ +.|... |.++++|+-..|+|||... ..++..+.- ++++.-+ +.|+.|++| -.||.|++||.+..
T Consensus 1168 ~~v-~dWqQ~~G~Ll~tGd~r~IRIWDa~~--E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG---faDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1168 GLV-VDWQQQSGHLLVTGDVRSIRIWDAHK--EQVVADIPYGSSTLVTALSADLVHGNIIAAG---FADGSVRVYDRRMA 1241 (1387)
T ss_pred Cee-eehhhhCCeEEecCCeeEEEEEeccc--ceeEeecccCCCccceeecccccCCceEEEe---ecCCceEEeecccC
Confidence 122 255554 5566667788999999987 444444321 2332221 237899998 88999999999864
Q ss_pred ceeeeeccccccccCCCCcce--E--EEEcCCCC-eEeecc-----EEEEcCCCccee--eeccCC--C-ce-EEEEecC
Q 000177 1628 QLEAKLSDTSVNLTGRGHAYS--Q--IHFSPSDT-MLLWNG-----ILWDRRNSVPVH--RFDQFT--D-HG-GGGFHPA 1691 (1922)
Q Consensus 1628 k~i~tL~d~s~~~~~~gh~~~--v--VaFSPdG~-lLaSgg-----rLWDlrtgk~I~--kf~gh~--~-~V-sVaFSPd 1691 (1922)
..-.-+ ...+.|... + +.+.+.|- .|++++ ++||+|...... +...|- + .. ++..|++
T Consensus 1242 ~~ds~v------~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h 1315 (1387)
T KOG1517|consen 1242 PPDSLV------CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH 1315 (1387)
T ss_pred Cccccc------eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC
Confidence 331111 011234433 3 77777664 366666 999999852222 222222 2 13 8899999
Q ss_pred CCEEEEEe----EEEecCCCeEEEEEcCCCc---------eeEEEccCCCEEEEEEccC
Q 000177 1692 GNEVIINS----EVWDLRKFRLLRSVPSLDQ---------TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1692 G~~LASGS----eIWDLrTgklL~tl~gH~~---------~sVaFSPdG~~LaSgs~~d 1737 (1922)
...+|+|+ +||++. |+.+..++.+.. .|++|+|---.+++|+.++
T Consensus 1316 apiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1316 APIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred CCeeeecCcceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCc
Confidence 99999999 699996 655555543322 6999999988888885444
No 228
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=2.2e-06 Score=107.60 Aligned_cols=194 Identities=15% Similarity=0.116 Sum_probs=115.4
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcE--E-EEec-C--CcEEEeccCCCCCCcceEeccc-eeEEEcCC
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQL--L-LSSS-S--QDVHLWNASSIAGGPMHSFEGC-KAARFSNS 1603 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~l--L-aSSs-D--gtVkLWDl~t~~gk~l~tf~gh-~sVaFSPD 1603 (1922)
+.|.+.|.+.++. +.+..+...+.+- .|||||+. + .++. + ..|.+.++.....+.+..+.+. ....|+||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP--~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITP--TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccc--eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCC
Confidence 4566777655444 3344344444444 89999874 2 2343 3 3577888876333344445554 56899999
Q ss_pred CCEEEEeecC--CCCCeEEEEECCCC---ceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcC--C
Q 000177 1604 GNLFAALPTE--TSDRGILLYDIQTY---QLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRR--N 1670 (1922)
Q Consensus 1604 G~~LaSgS~~--S~DgtIrIWDlrTg---k~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlr--t 1670 (1922)
|++|+..+.. ..+..+.+||+.++ ....... .........+|+|||+.|+..+ .+|.+. .
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~ 314 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP 314 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeec-------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc
Confidence 9998876422 22444555787653 2222221 0001122379999999777432 566543 2
Q ss_pred -CcceeeeccCCCce-EEEEecCCCEEEEEe--------EEEecCCCeEEEEEcCC-CceeEEEccCCCEEEEEE
Q 000177 1671 -SVPVHRFDQFTDHG-GGGFHPAGNEVIINS--------EVWDLRKFRLLRSVPSL-DQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1671 -gk~I~kf~gh~~~V-sVaFSPdG~~LASGS--------eIWDLrTgklL~tl~gH-~~~sVaFSPdG~~LaSgs 1734 (1922)
+.....+......+ ...|||||++|+..+ .+||+.+++......+. ......|+|+|++|+...
T Consensus 315 ~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 315 EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEE
Confidence 23344444443444 789999999998765 27899888664333221 226899999999888653
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=2.4e-07 Score=110.18 Aligned_cols=199 Identities=15% Similarity=0.203 Sum_probs=143.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC----ceeeeccCCCCeeEEEeeecCCCc-EEEEec-C--CcEEEecc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS----PLESCTSHQAPVTLVQSHLSGETQ-LLLSSS-S--QDVHLWNA 1581 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk----~l~tL~gHss~VtsLq~afSpDG~-lLaSSs-D--gtVkLWDl 1581 (1922)
..|..++.. ..+|++|-.+|.+.+|....+. .+..+..| .++..+ .-++... ++++|. . ..++|||+
T Consensus 106 ~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~--r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 106 KSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDV--RQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred ccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-Cceeee--ccCCCCCceEecCchhcccceeeeec
Confidence 455555544 3478899999999999987543 33344433 456666 4455444 445454 5 67999999
Q ss_pred CCCCCCcceEecc-------------ceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCC
Q 000177 1582 SSIAGGPMHSFEG-------------CKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1582 ~t~~gk~l~tf~g-------------h~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh 1645 (1922)
+. .+.+++-+. .+.+.|-+. ...|+++ +.-+.+++||.+.+. ++.+|. ...+
T Consensus 181 e~--~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~---T~~hqvR~YDt~~qRRPV~~fd-------~~E~ 248 (412)
T KOG3881|consen 181 EQ--SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI---TRYHQVRLYDTRHQRRPVAQFD-------FLEN 248 (412)
T ss_pred cc--ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE---ecceeEEEecCcccCcceeEec-------cccC
Confidence 87 433333222 267889886 7899999 788999999999764 344443 3467
Q ss_pred cceEEEEcCCCCeEeecc-----EEEEcCCCcceee-eccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1646 AYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHR-FDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~k-f~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
....+...|++++|+++. ..||++.++.+.. |++..+.+ ++..||+++++++++ +|+|+.+.+++..+
T Consensus 249 ~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 249 PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred cceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 788899999999999877 8999999987666 89999999 999999999999999 69999997777654
Q ss_pred cCCCc-eeEEEcc
Q 000177 1714 PSLDQ-TTITFNA 1725 (1922)
Q Consensus 1714 ~gH~~-~sVaFSP 1725 (1922)
--... +++.+.+
T Consensus 329 YvKs~lt~il~~~ 341 (412)
T KOG3881|consen 329 YVKSRLTFILLRD 341 (412)
T ss_pred hhhccccEEEecC
Confidence 42222 5555544
No 230
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=7.9e-08 Score=115.18 Aligned_cols=170 Identities=18% Similarity=0.304 Sum_probs=117.2
Q ss_pred eEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1555 TLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1555 tsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
..+ +|+.+|..|+++ .||+++||++.+ ...+.... .+.++.|+|||++|++. +.| ..+||++++|.+
T Consensus 148 k~v--af~~~gs~latgg~dg~lRv~~~Ps--~~t~l~e~~~~~eV~DL~FS~dgk~lasi---g~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVV--AFNGDGSKLATGGTDGTLRVWEWPS--MLTILEEIAHHAEVKDLDFSPDGKFLASI---GAD-SARVWSVNTGAA 219 (398)
T ss_pred eEE--EEcCCCCEeeeccccceEEEEecCc--chhhhhhHhhcCccccceeCCCCcEEEEe---cCC-ceEEEEeccCch
Confidence 455 889999999995 699999999876 33333332 35889999999999998 777 799999999987
Q ss_pred eeeeccccccccCCCCcceEEEEcCCC---CeEeecc------------EEEEcCCCcceee-eccCCCceEEEEecCCC
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSD---TMLLWNG------------ILWDRRNSVPVHR-FDQFTDHGGGGFHPAGN 1693 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG---~lLaSgg------------rLWDlrtgk~I~k-f~gh~~~VsVaFSPdG~ 1693 (1922)
+....+. ...+....+.|+.++ .+.+... .+|+-..--...+ ...++..-+++.+++|+
T Consensus 220 ~a~~t~~-----~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk 294 (398)
T KOG0771|consen 220 LARKTPF-----SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK 294 (398)
T ss_pred hhhcCCc-----ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc
Confidence 7766521 112333337777666 3333222 3454321111122 22233333999999999
Q ss_pred EEEEEe-----EEEecCCCeEEEEEc-CCCc--eeEEEccCCCEEEEEEccC
Q 000177 1694 EVIINS-----EVWDLRKFRLLRSVP-SLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1694 ~LASGS-----eIWDLrTgklL~tl~-gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+++.|+ -|++..+.+.++-++ .|.. +.+.|+|+.+++++.+.++
T Consensus 295 f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 295 FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 999999 388888888887776 4443 8999999999998864333
No 231
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.3e-06 Score=106.98 Aligned_cols=234 Identities=15% Similarity=0.230 Sum_probs=159.0
Q ss_pred eeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEe--ccceeEEEcCCCCEEEEeecCC--------CCCeEEEEE
Q 000177 1554 VTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSF--EGCKAARFSNSGNLFAALPTET--------SDRGILLYD 1623 (1922)
Q Consensus 1554 VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf--~gh~sVaFSPDG~~LaSgS~~S--------~DgtIrIWD 1623 (1922)
-+.+ .|||.|.||+|=.-.-|.+|--.+ ...++.| .++..+.|||+.++|+|=+..- ....+.|||
T Consensus 213 etyv--~wSP~GTYL~t~Hk~GI~lWGG~~--f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 213 ETYV--RWSPKGTYLVTFHKQGIALWGGES--FDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeE--EecCCceEEEEEeccceeeecCcc--HHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 3556 789999999998877899998766 4455555 3568899999999999863321 236799999
Q ss_pred CCCCceeeeeccccccccCCCCc-ceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEE
Q 000177 1624 IQTYQLEAKLSDTSVNLTGRGHA-YSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1624 lrTgk~i~tL~d~s~~~~~~gh~-~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LAS 1697 (1922)
++||....+|.... .... -+.+.||-|+++++--. .||+..+-.++..-.-.-..| ...|+|.++.||-
T Consensus 289 I~tG~lkrsF~~~~-----~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 289 IATGLLKRSFPVIK-----SPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred ccccchhcceeccC-----CCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 99999998886210 1222 23499999999999433 777765532222111112334 7799999998886
Q ss_pred Ee----------EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccC---CcceEEEEe
Q 000177 1698 NS----------EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHP---LFAAFRTVD 1762 (1922)
Q Consensus 1698 GS----------eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp---~~ssFrt~D 1762 (1922)
-+ -+-.+.+.+.+++..-+.. +.+.|-.+|.+|+.-..+ ..+.. ..+.|.++.
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR------------~tK~~~~g~f~n~eIfr 431 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDR------------HTKSKVKGQFSNLEIFR 431 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEe------------eccccccceEeeEEEEE
Confidence 55 1556666677776665554 789999999999975211 11111 223344443
Q ss_pred cC-CCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1763 AI-NYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1763 a~-dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.. .--++-.++.+..|..++|.|.|..++++..... -+.++.|.+.
T Consensus 432 ireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~---k~tvsfY~~e 478 (698)
T KOG2314|consen 432 IREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV---KNTVSFYAVE 478 (698)
T ss_pred eeccCCCceeeecchheeeeeeccCCCeEEEEEcccc---ccceeEEEee
Confidence 32 2345677788999999999999999999975543 3567777664
No 232
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=2.1e-07 Score=108.86 Aligned_cols=277 Identities=13% Similarity=0.256 Sum_probs=166.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-----ceeeeccCC------------CCeeEEEeeecCCC---cEEE
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS-----PLESCTSHQ------------APVTLVQSHLSGET---QLLL 1569 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk-----~l~tL~gHs------------s~VtsLq~afSpDG---~lLa 1569 (1922)
+-|.++.|...|.+|+||..+|.|.+|.-.... ....++.|. ..|+.| .|.+++ .+|+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkI--rw~~~~n~a~FLl 103 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKI--RWLDDGNLAEFLL 103 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhc--eecCCCCccEEEE
Confidence 568999999999999999999999999754322 223445554 357778 445543 3666
Q ss_pred EecCCcEEEeccCCCCCCc---------------------------------ceEec-cc----eeEEEcCCCCEEEEee
Q 000177 1570 SSSSQDVHLWNASSIAGGP---------------------------------MHSFE-GC----KAARFSNSGNLFAALP 1611 (1922)
Q Consensus 1570 SSsDgtVkLWDl~t~~gk~---------------------------------l~tf~-gh----~sVaFSPDG~~LaSgS 1611 (1922)
+..|.+|++|-+.....+. .+.+. .| +++.++.|+..+++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-- 181 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-- 181 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee--
Confidence 7789999999986521111 00111 12 67899999999998
Q ss_pred cCCCCCeEEEEECCCCceeeeecc---ccccccCCCCcceEEEEcCCCCe-Ee-ecc----EEEEcCCCcc----eeeec
Q 000177 1612 TETSDRGILLYDIQTYQLEAKLSD---TSVNLTGRGHAYSQIHFSPSDTM-LL-WNG----ILWDRRNSVP----VHRFD 1678 (1922)
Q Consensus 1612 ~~S~DgtIrIWDlrTgk~i~tL~d---~s~~~~~~gh~~~vVaFSPdG~l-La-Sgg----rLWDlrtgk~----I~kf~ 1678 (1922)
..|-.|.+|.+.--..-..+-+ ..+.. ....+....|+|.... ++ +.+ +|-|+|.... -+.|.
T Consensus 182 --ADdLRINLWnlei~d~sFnIVDIKP~nmEe--LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 182 --ADDLRINLWNLEIIDQSFNIVDIKPANMEE--LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred --ccceeeeeccccccCCceeEEEccccCHHH--HHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 4788999999874332222211 11000 0112333778886543 33 333 8999985321 11121
Q ss_pred c---------CC---Cce-EEEEecCCCEEEEEe----EEEec-CCCeEEEEEcCCCc-----------------eeEEE
Q 000177 1679 Q---------FT---DHG-GGGFHPAGNEVIINS----EVWDL-RKFRLLRSVPSLDQ-----------------TTITF 1723 (1922)
Q Consensus 1679 g---------h~---~~V-sVaFSPdG~~LASGS----eIWDL-rTgklL~tl~gH~~-----------------~sVaF 1723 (1922)
. +. ..| .+.|+++|+|+++-. ++||+ ...+++.+++-|.. ..++|
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 1 11 223 689999999999987 79999 45788888886653 36889
Q ss_pred ccCCCEEEEEEccCchhhhh---------hhcccccc--cCCcceEEEEe-cCCC----ceeeeeccCCceEEEEEcCCC
Q 000177 1724 NARGDVIYAILRRNLEDVMS---------AVHTRRVK--HPLFAAFRTVD-AINY----SDIATIPVDRCVLDFATERTD 1787 (1922)
Q Consensus 1724 SPdG~~LaSgs~~d~~dv~s---------~lh~rr~k--sp~~ssFrt~D-a~dy----s~IaTidvkr~I~dLa~SPdd 1787 (1922)
|.++.++++|+..+.-.++. .+...+.. .......+.+- ..+. -.+-..+....|+..+|+|..
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~e 417 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKE 417 (433)
T ss_pred cCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcc
Confidence 99999999985433211111 01001100 00111112121 1111 122233446678999999999
Q ss_pred ceEEEEe
Q 000177 1788 SFVGLIT 1794 (1922)
Q Consensus 1788 s~LAVVe 1794 (1922)
..||+..
T Consensus 418 n~ia~aa 424 (433)
T KOG1354|consen 418 NSIAVAA 424 (433)
T ss_pred ceeeeee
Confidence 9999874
No 233
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=9.2e-07 Score=102.68 Aligned_cols=202 Identities=13% Similarity=0.137 Sum_probs=137.7
Q ss_pred cCceeeEEecCCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC---------CceeeeccCCCCeeEEEeeecCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSS---------SPLESCTSHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tg---------k~l~tL~gHss~VtsLq~afSpD 1564 (1922)
+++......+.|. +.|+.|.|.+ =|+.+|++|.|++|+||.-... ....++....+.|+.|+|+...-
T Consensus 47 ~~W~~Ts~Wrah~-~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl 125 (361)
T KOG2445|consen 47 GTWSCTSSWRAHD-GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL 125 (361)
T ss_pred CceEEeeeEEecC-CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc
Confidence 3455566678899 9999999987 6899999999999999985311 12346677789999995554446
Q ss_pred CcEEEE-ecCCcEEEeccCCCC----CCcceEec-----------cceeEEEcCC---CCEEEEeecCC--CCCeEEEEE
Q 000177 1565 TQLLLS-SSSQDVHLWNASSIA----GGPMHSFE-----------GCKAARFSNS---GNLFAALPTET--SDRGILLYD 1623 (1922)
Q Consensus 1565 G~lLaS-SsDgtVkLWDl~t~~----gk~l~tf~-----------gh~sVaFSPD---G~~LaSgS~~S--~DgtIrIWD 1623 (1922)
|-.+++ +.||+++||+.-.+. ....+.++ ...|+.|+|. ..+|+.|+.+. .-+.++||.
T Consensus 126 GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 126 GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence 778888 569999999875521 11122222 1368999984 46788873321 114788887
Q ss_pred CCCCc-eeeeeccccccccCCCCcceE--EEEcCCC----CeEeecc----EEEEcCCC--------------------c
Q 000177 1624 IQTYQ-LEAKLSDTSVNLTGRGHAYSQ--IHFSPSD----TMLLWNG----ILWDRRNS--------------------V 1672 (1922)
Q Consensus 1624 lrTgk-~i~tL~d~s~~~~~~gh~~~v--VaFSPdG----~lLaSgg----rLWDlrtg--------------------k 1672 (1922)
...+. ....+. ...+|..++ ++|.|+- .+|++++ +||.++.. +
T Consensus 206 ~~e~~rKw~kva------~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~ 279 (361)
T KOG2445|consen 206 YNENGRKWLKVA------ELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVE 279 (361)
T ss_pred ecCCcceeeeeh------hcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceE
Confidence 65433 222222 112455554 9999964 4566555 89998831 1
Q ss_pred ceeeeccCCCce-EEEEecCCCEEEEEe-----EEEec
Q 000177 1673 PVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDL 1704 (1922)
Q Consensus 1673 ~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDL 1704 (1922)
.+..|.+|+..+ .+.|+-.|..|++.+ ++|..
T Consensus 280 ~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 280 KVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 345578888888 999999999999887 57754
No 234
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=2.5e-06 Score=107.07 Aligned_cols=212 Identities=13% Similarity=0.098 Sum_probs=121.8
Q ss_pred ecCCCCCCEEEEEEcCCCCEE---EEEeCCC--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec--CC--
Q 000177 1504 CRDDAGALLTCITFLGDSSHI---AVGSHTK--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS--SQ-- 1574 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lL---ASGS~DG--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs--Dg-- 1574 (1922)
|..+. ..+.+-+|||||+.+ ++...+| .|.+.++.+++... +....+..... .|||||+.|+... ++
T Consensus 180 lt~~~-~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p--~wSPDG~~Laf~s~~~g~~ 255 (428)
T PRK01029 180 LTQEH-SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMP--TFSPRKKLLAFISDRYGNP 255 (428)
T ss_pred cccCC-CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccce--EECCCCCEEEEEECCCCCc
Confidence 44444 456677999999752 2444443 57777888776433 22233334445 8999998887633 22
Q ss_pred --cEEEeccCCCC-CCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCc
Q 000177 1575 --DVHLWNASSIA-GGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1575 --tVkLWDl~t~~-gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~ 1646 (1922)
.+.+|++.... +.+.....+ .....|+|||+.|+..+.......|.++++.. +.....+. .....
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-------~~~~~ 328 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-------KKYRN 328 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-------cCCCC
Confidence 34457765411 222222222 25689999999888774322222344445542 22223332 01122
Q ss_pred ceEEEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe------E--EEecCCCeE
Q 000177 1647 YSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS------E--VWDLRKFRL 1709 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS------e--IWDLrTgkl 1709 (1922)
.....|+|||+.|+..+ .+||+.+++... +......+ ...|+|||++|+..+ . +||+.+++.
T Consensus 329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 23488999999888543 789998886543 33222233 789999999887543 2 667776654
Q ss_pred EEEEcCCC-ceeEEEccCC
Q 000177 1710 LRSVPSLD-QTTITFNARG 1727 (1922)
Q Consensus 1710 L~tl~gH~-~~sVaFSPdG 1727 (1922)
.....+.. ....+|+|-.
T Consensus 408 ~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 408 RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEeecCCCcccCceecCCC
Confidence 43333222 2567777753
No 235
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1.2e-05 Score=95.98 Aligned_cols=266 Identities=14% Similarity=0.216 Sum_probs=161.3
Q ss_pred EEEEEeC----CCcEEEEECCCCCce---eeeccCCCCeeEEEeeecCCCcEEEEe----cCCcEEEeccCCCCCCcc--
Q 000177 1523 HIAVGSH----TKELKIFDSNSSSPL---ESCTSHQAPVTLVQSHLSGETQLLLSS----SSQDVHLWNASSIAGGPM-- 1589 (1922)
Q Consensus 1523 lLASGS~----DGtIkIWDl~tgk~l---~tL~gHss~VtsLq~afSpDG~lLaSS----sDgtVkLWDl~t~~gk~l-- 1589 (1922)
.++.|+. +.-|.+|++++..-. ..+-.+.+..+-| +|+|++++|.++ .++.|.-|.+....|...
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl--~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l 81 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYL--AVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL 81 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceE--EECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe
Confidence 3455554 367999999743221 2234567788888 899999888874 267787777764223321
Q ss_pred --eEecc--ceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-Cceee---eeccccccc-cCCCCc-ceEEEEcCCCCeE
Q 000177 1590 --HSFEG--CKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEA---KLSDTSVNL-TGRGHA-YSQIHFSPSDTML 1659 (1922)
Q Consensus 1590 --~tf~g--h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~---tL~d~s~~~-~~~gh~-~~vVaFSPdG~lL 1659 (1922)
....+ ..+++++++|++++++.-. -+.|.++-++. |.... .+....... ....++ .-.+.|.|++++|
T Consensus 82 n~~~~~g~~p~yvsvd~~g~~vf~AnY~--~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l 159 (346)
T COG2706 82 NRQTLPGSPPCYVSVDEDGRFVFVANYH--SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYL 159 (346)
T ss_pred eccccCCCCCeEEEECCCCCEEEEEEcc--CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEE
Confidence 11122 3789999999999998443 48899999976 33322 221000000 000000 1228899999999
Q ss_pred eecc------EEEEcCCCcce----eeeccCCCceEEEEecCCCEEEEEeE------EEecCCC----eEEEEEcCCCc-
Q 000177 1660 LWNG------ILWDRRNSVPV----HRFDQFTDHGGGGFHPAGNEVIINSE------VWDLRKF----RLLRSVPSLDQ- 1718 (1922)
Q Consensus 1660 aSgg------rLWDlrtgk~I----~kf~gh~~~VsVaFSPdG~~LASGSe------IWDLrTg----klL~tl~gH~~- 1718 (1922)
++.. .+|++..|+.. ..++...++--+.|||+|++..+.++ +|..... +.++++.....
T Consensus 160 ~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 160 VVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred EEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc
Confidence 9877 89999977642 22222333448999999999888874 8887662 34444432221
Q ss_pred -------eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC-CceeeeeccCCc-eEEEEEcCCCce
Q 000177 1719 -------TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN-YSDIATIPVDRC-VLDFATERTDSF 1789 (1922)
Q Consensus 1719 -------~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d-ys~IaTidvkr~-I~dLa~SPdds~ 1789 (1922)
..|..+|+|++||++-+ ..+ ....|++-.... ...+..+..... -.++.+++.+++
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNR-g~d--------------sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNR-GHD--------------SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF 304 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecC-CCC--------------eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence 48999999999999832 211 112233322211 222333333333 678999999999
Q ss_pred EEEEecCCCCCccceEEEEEecC
Q 000177 1790 VGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1790 LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
|.+...++ ..+.+|++..
T Consensus 305 Liaa~q~s-----d~i~vf~~d~ 322 (346)
T COG2706 305 LIAANQKS-----DNITVFERDK 322 (346)
T ss_pred EEEEccCC-----CcEEEEEEcC
Confidence 98874322 2377787643
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.68 E-value=1.5e-05 Score=97.20 Aligned_cols=258 Identities=15% Similarity=0.247 Sum_probs=151.8
Q ss_pred EEEEeCC----CcEEEEEC--CCCCce--eeeccCCCCeeEEEeeecCCCcEEEEe-----cCCcEEEeccCCCCCC--c
Q 000177 1524 IAVGSHT----KELKIFDS--NSSSPL--ESCTSHQAPVTLVQSHLSGETQLLLSS-----SSQDVHLWNASSIAGG--P 1588 (1922)
Q Consensus 1524 LASGS~D----GtIkIWDl--~tgk~l--~tL~gHss~VtsLq~afSpDG~lLaSS-----sDgtVkLWDl~t~~gk--~ 1588 (1922)
+++|+.+ +.|.+|++ .+++.. ..+. -......| .++|++++|.+. ..+.|..|.+....++ .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l--~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWL--AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCE--EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceE--EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE
Confidence 5667766 68888888 334332 2222 22334456 779999988874 2568988988762122 2
Q ss_pred ceEec--c--ceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-Cceeee---ec----cccccccCCCCcceEEEEcCCC
Q 000177 1589 MHSFE--G--CKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAK---LS----DTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1589 l~tf~--g--h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~t---L~----d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
+.+.. + ...++++|++++++++. -.+++|.+|++.. |..... +. .+.... ..+...-.+.|+|+|
T Consensus 79 ~~~~~~~g~~p~~i~~~~~g~~l~van--y~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~r-q~~~h~H~v~~~pdg 155 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVDPDGRFLYVAN--YGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDR-QEGPHPHQVVFSPDG 155 (345)
T ss_dssp EEEEEESSSCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTT-TSSTCEEEEEE-TTS
T ss_pred eeeeccCCCCcEEEEEecCCCEEEEEE--ccCCeEEEEEccCCcccceeeeecccCCCCCcccc-cccccceeEEECCCC
Confidence 22222 2 25689999999999873 3579999999987 433222 11 000000 011112238999999
Q ss_pred CeEeecc------EEEEcCCCc--c--eeee--ccCCCceEEEEecCCCEEEEEeE------EEecC--CC--eEEEEEc
Q 000177 1657 TMLLWNG------ILWDRRNSV--P--VHRF--DQFTDHGGGGFHPAGNEVIINSE------VWDLR--KF--RLLRSVP 1714 (1922)
Q Consensus 1657 ~lLaSgg------rLWDlrtgk--~--I~kf--~gh~~~VsVaFSPdG~~LASGSe------IWDLr--Tg--klL~tl~ 1714 (1922)
+++++.. .+|++.... . ...+ ....++-.+.|+|+|+++.+..+ +|++. ++ +.++++.
T Consensus 156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 9888654 777776554 2 2223 23334448999999999988772 67776 43 3444444
Q ss_pred CC--------CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEec--C--CCceeeeecc-CCceEEE
Q 000177 1715 SL--------DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDA--I--NYSDIATIPV-DRCVLDF 1781 (1922)
Q Consensus 1715 gH--------~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da--~--dys~IaTidv-kr~I~dL 1781 (1922)
.. ....+.++|+|++||++.+.. .++.+++. . ....+..+.. ...-.++
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~------------------~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~ 297 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGS------------------NSISVFDLDPATGTLTLVQTVPTGGKFPRHF 297 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEECTT------------------TEEEEEEECTTTTTEEEEEEEEESSSSEEEE
T ss_pred eccccccccCCceeEEEecCCCEEEEEeccC------------------CEEEEEEEecCCCceEEEEEEeCCCCCccEE
Confidence 22 126899999999999984322 22333332 1 2334444444 3347899
Q ss_pred EEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1782 ATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1782 a~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
+++|+|+++.|....+ ..+.+|++
T Consensus 298 ~~s~~g~~l~Va~~~s-----~~v~vf~~ 321 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDS-----NTVSVFDI 321 (345)
T ss_dssp EE-TTSSEEEEEETTT-----TEEEEEEE
T ss_pred EEeCCCCEEEEEecCC-----CeEEEEEE
Confidence 9999999999875333 45777766
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.66 E-value=1.1e-07 Score=115.90 Aligned_cols=129 Identities=16% Similarity=0.302 Sum_probs=98.1
Q ss_pred CCEEEEEEcCC-CCEEEEEeCCCcEEEEECCC--------------CC--------------ceeeeccCCCCeeEEEee
Q 000177 1510 ALLTCITFLGD-SSHIAVGSHTKELKIFDSNS--------------SS--------------PLESCTSHQAPVTLVQSH 1560 (1922)
Q Consensus 1510 ~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~t--------------gk--------------~l~tL~gHss~VtsLq~a 1560 (1922)
..|+|++|-|. ...++..-.+|.+.+||..- +. ++..+.--.+.|+.. +
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f--~ 297 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEF--A 297 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccce--e
Confidence 67999999994 44667777899999997631 11 111111112355566 8
Q ss_pred ecCCCcEEEE-ecCCcEEEeccCCCCCCcceE----eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecc
Q 000177 1561 LSGETQLLLS-SSSQDVHLWNASSIAGGPMHS----FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1561 fSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~t----f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
|+|||++|++ |.||.++|||+.+ .+.+.. |-+-.||+|+|||++|++| +.|.-|.||.+...+.+..-
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt--~eLlg~mkSYFGGLLCvcWSPDGKyIvtG---GEDDLVtVwSf~erRVVARG-- 370 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDT--QELLGVMKSYFGGLLCVCWSPDGKYIVTG---GEDDLVTVWSFEERRVVARG-- 370 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccH--HHHHHHHHhhccceEEEEEcCCccEEEec---CCcceEEEEEeccceEEEec--
Confidence 9999999999 7799999999987 444333 3346999999999999999 89999999999988877654
Q ss_pred ccccccCCCCcceE--EEEcC
Q 000177 1636 TSVNLTGRGHAYSQ--IHFSP 1654 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~v--VaFSP 1654 (1922)
++|..++ ++|.|
T Consensus 371 -------qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 371 -------QGHKSWVSVVAFDP 384 (636)
T ss_pred -------cccccceeeEeecc
Confidence 5898887 99987
No 238
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.66 E-value=6.9e-07 Score=116.95 Aligned_cols=207 Identities=14% Similarity=0.158 Sum_probs=137.6
Q ss_pred cCceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------CceeeeccCCCCeeEEEeeecCCCcE
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSS-------SPLESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tg-------k~l~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
-++..+..|..|. ..|..++.++ ++.+++|||.||+|||||+..- ....++.--...+.++ ...+.+..
T Consensus 1036 p~G~lVAhL~Ehs-~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~v--t~~~~~~~ 1112 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHS-SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKV--TMCGNGDQ 1112 (1431)
T ss_pred ccceEeehhhhcc-ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEE--EeccCCCe
Confidence 3566677888999 8888888877 5599999999999999998532 2233454456778888 66677777
Q ss_pred EEEe-cCCcEEEeccCCCCCCc-----ceEec----cc--eeEEEcC-CCC-EEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1568 LLSS-SSQDVHLWNASSIAGGP-----MHSFE----GC--KAARFSN-SGN-LFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1568 LaSS-sDgtVkLWDl~t~~gk~-----l~tf~----gh--~sVaFSP-DG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
++.+ .||.|.+.++....... .+... +. ..-+|.. .+. .++.+ +.-+.|..||+++.....++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~---T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYA---TDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEE---EeccceEEecchhhhhHHhh
Confidence 7774 69999999987511110 11111 11 1122222 233 56666 66788999999987776666
Q ss_pred ccccccccCCCCc-ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCC-Cce-EEEEec---CCCEEEEEe---
Q 000177 1634 SDTSVNLTGRGHA-YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFT-DHG-GGGFHP---AGNEVIINS--- 1699 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~-~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~-~~V-sVaFSP---dG~~LASGS--- 1699 (1922)
+. + ..|. +..++.+|.+++++.|. .+||+|-+.++..+.-.. ..+ .+..+| ....+++++
T Consensus 1190 k~----~--~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1190 KN----Q--LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred hc----C--ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence 51 1 1232 34599999999999776 899999999988775432 233 444443 334555554
Q ss_pred ----EEEecCCCeEEEEEc
Q 000177 1700 ----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1700 ----eIWDLrTgklL~tl~ 1714 (1922)
.+|++.+|.+-.++-
T Consensus 1264 ~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred CCceeeeecccCcceEEEE
Confidence 399999987666554
No 239
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=6.9e-08 Score=116.77 Aligned_cols=241 Identities=14% Similarity=0.163 Sum_probs=161.7
Q ss_pred eeecCceeeEEec-CCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCC-CCce--eeeccCCCCeeEEEeeecCCC-
Q 000177 1493 FVYSRFRPWRTCR-DDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNS-SSPL--ESCTSHQAPVTLVQSHLSGET- 1565 (1922)
Q Consensus 1493 fi~srfrpirtLr-gH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~t-gk~l--~tL~gHss~VtsLq~afSpDG- 1565 (1922)
|.|.+.++...|. ||. ..|.-.+|-| +.+-|++++.||.|++=.+.. +.+. ..+..|.++|..+ +.-|+.
T Consensus 169 WdW~~~~~~l~f~SGH~-~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhkl--av~p~sp 245 (559)
T KOG1334|consen 169 WDWVSGSPKLSFESGHC-NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKL--AVEPDSP 245 (559)
T ss_pred ehhhccCcccccccccc-cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCcccee--eecCCCC
Confidence 3455566665565 599 8888888998 556899999999999987643 3332 3457799999999 555554
Q ss_pred -cEEEEecCCcEEEeccCCCCCCcceEec----------cceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCce----
Q 000177 1566 -QLLLSSSSQDVHLWNASSIAGGPMHSFE----------GCKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQL---- 1629 (1922)
Q Consensus 1566 -~lLaSSsDgtVkLWDl~t~~gk~l~tf~----------gh~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~---- 1629 (1922)
.++.+|.|+.|+-+|++. ..+...+. +-+.++.+|-. ..|+++ +.|..+++||.+.-..
T Consensus 246 ~~f~S~geD~~v~~~Dlr~--~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVg---G~dqf~RvYD~R~~~~e~~n 320 (559)
T KOG1334|consen 246 KPFLSCGEDAVVFHIDLRQ--DVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVG---GSDQFARVYDQRRIDKEENN 320 (559)
T ss_pred Ccccccccccceeeeeecc--CCccceeeeeccCCccceeeeeEecCCCCccccccC---Chhhhhhhhcccchhhcccc
Confidence 344446799999999987 44433332 12678888854 478887 8899999999985432
Q ss_pred --eeeeccccccccCCCCcceEEEEcCCC-CeEeecc----EEEEcCC--C----------cceee-eccCCCce---EE
Q 000177 1630 --EAKLSDTSVNLTGRGHAYSQIHFSPSD-TMLLWNG----ILWDRRN--S----------VPVHR-FDQFTDHG---GG 1686 (1922)
Q Consensus 1630 --i~tL~d~s~~~~~~gh~~~vVaFSPdG-~lLaSgg----rLWDlrt--g----------k~I~k-f~gh~~~V---sV 1686 (1922)
+.+|.+..+.. ...-.+.++.|+.++ .++++-. ++|.-.. | ..++. |++|.+.- .+
T Consensus 321 ~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgV 399 (559)
T KOG1334|consen 321 GVLDKFCPHHLVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGV 399 (559)
T ss_pred chhhhcCCccccc-cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccccee
Confidence 23333222221 111223448899555 5555544 5664332 2 23344 88887643 33
Q ss_pred -EEecCCCEEEEEeE-----EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhh
Q 000177 1687 -GFHPAGNEVIINSE-----VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVM 1742 (1922)
Q Consensus 1687 -aFSPdG~~LASGSe-----IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~ 1742 (1922)
.|.|...||++||. ||+..++++++-+.+... +|+.=+|--.+|+++.-+...++|
T Consensus 400 NFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 400 NFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred eeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeee
Confidence 67899999999994 999999999887775433 899999999999987433333443
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.3e-06 Score=107.86 Aligned_cols=244 Identities=17% Similarity=0.261 Sum_probs=157.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC--CcEEEE---ec---CCcEEEeccCCC
Q 000177 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE--TQLLLS---SS---SQDVHLWNASSI 1584 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD--G~lLaS---Ss---DgtVkLWDl~t~ 1584 (1922)
|+..|+.|..+ +.=-..+.|++|+....+... -.-|...|+.+ .+||. ..+|++ .. -..|+||.+...
T Consensus 129 W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f--~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESL-AARLVSNEVQFYDLGSFKTIQ-HKLSVSGITML--SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhh-hhhhhcceEEEEecCCcccee-eeeeccceeeE--EecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 79999998763 333345679999987643221 13357778888 55654 456665 33 346999988631
Q ss_pred C-CCc--ceEe-c-cceeEEEcCCCCEE-EEeecCC--------CCCeEEEEECCCCceeeeeccccccccCCCCcceEE
Q 000177 1585 A-GGP--MHSF-E-GCKAARFSNSGNLF-AALPTET--------SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1585 ~-gk~--l~tf-~-gh~sVaFSPDG~~L-aSgS~~S--------~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
. ..+ .++| + .+..+.|++-|.-| +.++.+- ...+++++++....+...+. ...++..+
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--------k~GPVhdv 276 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--------KEGPVHDV 276 (566)
T ss_pred cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--------CCCCceEE
Confidence 0 111 1222 1 23567788866533 2221110 23578888888555555453 23455569
Q ss_pred EEcCCCCeEeec-c------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe--------EEEecCCCeEEEEEc
Q 000177 1651 HFSPSDTMLLWN-G------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS--------EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1651 aFSPdG~lLaSg-g------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS--------eIWDLrTgklL~tl~ 1714 (1922)
+|+|+++-++.+ | .|||++ +++++.| ..+.- ++.|+|.|++|+.++ +|||+.+.+++..+.
T Consensus 277 ~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~ 353 (566)
T KOG2315|consen 277 TWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK 353 (566)
T ss_pred EECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence 999999776644 3 799977 5566555 33444 899999999999998 699999999999999
Q ss_pred CCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcC
Q 000177 1715 SLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATER 1785 (1922)
Q Consensus 1715 gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SP 1785 (1922)
..+.+-+.|+|+|.+++++.... |.+ .++.+++|+ ++.+.+...++++.++.++|-|
T Consensus 354 a~~tt~~eW~PdGe~flTATTaP-----------Rlr--vdNg~Kiwh-ytG~~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 354 AANTTVFEWSPDGEYFLTATTAP-----------RLR--VDNGIKIWH-YTGSLLHEKMFKSELLQVEWRP 410 (566)
T ss_pred cCCceEEEEcCCCcEEEEEeccc-----------cEE--ecCCeEEEE-ecCceeehhhhhHhHhheeeee
Confidence 88888999999999999984211 111 345566665 2334444445554567777765
No 241
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.63 E-value=3.7e-07 Score=105.10 Aligned_cols=178 Identities=16% Similarity=0.248 Sum_probs=125.5
Q ss_pred CCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCc---eeeeccCCCCeeEEEeeecCCCc-EEEE-ecCCcEEEe
Q 000177 1506 DDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSP---LESCTSHQAPVTLVQSHLSGETQ-LLLS-SSSQDVHLW 1579 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~---l~tL~gHss~VtsLq~afSpDG~-lLaS-SsDgtVkLW 1579 (1922)
.|. .++++..|+. |.++|.+.|-|.+..|||++++.. ...+.+|...|+.| +|...+. ++++ |.||.|++|
T Consensus 148 ~~~-aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI--af~~~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 148 EFC-APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI--AFLKGSRDVFASVGADGSVRMF 224 (364)
T ss_pred ccC-CcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE--EeccCccceEEEecCCCcEEEE
Confidence 355 8899999997 888999999999999999998743 45668999999999 7777654 4555 679999999
Q ss_pred ccCCCCCCcceEecc------ceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCC-ceeeeeccccccccCCCCcceE--
Q 000177 1580 NASSIAGGPMHSFEG------CKAARFSN-SGNLFAALPTETSDRGILLYDIQTY-QLEAKLSDTSVNLTGRGHAYSQ-- 1649 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~g------h~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~s~~~~~~gh~~~v-- 1649 (1922)
|++..... .-.+++ -..++|++ |.+++++-. -....|.|.|++.. ..+..+. +|...+
T Consensus 225 DLR~leHS-TIIYE~p~~~~pLlRLswnkqDpnymATf~--~dS~~V~iLDiR~P~tpva~L~---------~H~a~VNg 292 (364)
T KOG0290|consen 225 DLRSLEHS-TIIYEDPSPSTPLLRLSWNKQDPNYMATFA--MDSNKVVILDIRVPCTPVARLR---------NHQASVNG 292 (364)
T ss_pred Eecccccc-eEEecCCCCCCcceeeccCcCCchHHhhhh--cCCceEEEEEecCCCcceehhh---------cCcccccc
Confidence 99872111 112222 14578888 456777652 33467999999853 3334443 565544
Q ss_pred EEEcCCC-CeEeecc-----EEEEcCCC------cceeeeccCCCce-EEEEec-CCCEEEEEe
Q 000177 1650 IHFSPSD-TMLLWNG-----ILWDRRNS------VPVHRFDQFTDHG-GGGFHP-AGNEVIINS 1699 (1922)
Q Consensus 1650 VaFSPdG-~lLaSgg-----rLWDlrtg------k~I~kf~gh~~~V-sVaFSP-dG~~LASGS 1699 (1922)
++|.|.. ..|.++| .+||+.+. .++..|. ..+.| .+.|+| .+.+|+++.
T Consensus 293 IaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 293 IAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred eEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe
Confidence 9999976 5677888 89999853 2344444 33344 889985 467777765
No 242
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=1.8e-06 Score=111.53 Aligned_cols=275 Identities=15% Similarity=0.137 Sum_probs=171.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccC---CCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCC-
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSH---QAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIA- 1585 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gH---ss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~- 1585 (1922)
.-..+.|+|=...++++...-.|+|||.+.++.+..|..+ ...|+.+++---.|..++++ ++||.|+||+--...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 3456778887778888888889999999999998888544 35677775322234556666 569999999754311
Q ss_pred --CCcceEecc---c--------eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1586 --GGPMHSFEG---C--------KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1586 --gk~l~tf~g---h--------~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
.+.+..+.+ . --+.|.....+|+++ +.-..|+|||....+++..++- +.+.....++-
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t---Gd~r~IRIWDa~~E~~~~diP~------~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT---GDVRSIRIWDAHKEQVVADIPY------GSSTLVTALSA 1216 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec---CCeeEEEEEecccceeEeeccc------CCCccceeecc
Confidence 122333322 1 225676655555555 4568899999998888877751 11111122222
Q ss_pred -cCCCCeEeecc-----EEEEcCCCc---ceeeeccCCCc--e-EEEEecCCC-EEEEEe-----EEEecCCCeEE--EE
Q 000177 1653 -SPSDTMLLWNG-----ILWDRRNSV---PVHRFDQFTDH--G-GGGFHPAGN-EVIINS-----EVWDLRKFRLL--RS 1712 (1922)
Q Consensus 1653 -SPdG~lLaSgg-----rLWDlrtgk---~I~kf~gh~~~--V-sVaFSPdG~-~LASGS-----eIWDLrTgklL--~t 1712 (1922)
.+.|+.++.|- ++||.|... .+..+..|+.. | .+.+.++|. .|++|+ ++||+|..... -+
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 23356776543 999999753 57888888876 6 888888775 488888 59999973211 12
Q ss_pred EcCCC-----ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCC
Q 000177 1713 VPSLD-----QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTD 1787 (1922)
Q Consensus 1713 l~gH~-----~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdd 1787 (1922)
+..|. -+++..++....|++|+. ....++...+ + ....|+ |.+..--.-...+.+++++|.-
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~-----~l~~~k------~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-E-----QLNIIK------YNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-h-----hhcccc------cCcccccCcCCCcceeeecchh
Confidence 22222 378999999999999853 2222221110 0 111111 1111111123457899999998
Q ss_pred ceEEEEecCCCCCccceEEEEEecCC
Q 000177 1788 SFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1788 s~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
-.+|+. ..|+.|.||...+.
T Consensus 1364 ~llAaG------~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1364 LLLAAG------SADSTVSIYSCEKP 1383 (1387)
T ss_pred Hhhhhc------cCCceEEEeecCCc
Confidence 888753 45688999976543
No 243
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.62 E-value=9.5e-06 Score=96.47 Aligned_cols=227 Identities=8% Similarity=0.151 Sum_probs=149.3
Q ss_pred CCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee
Q 000177 1552 APVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE 1630 (1922)
Q Consensus 1552 s~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i 1630 (1922)
..++.+ .|+.+..+|..|+..-.++|..... .++-....+ ..-+..--....++..+. ..-+.+++++++.+..+
T Consensus 6 ~ti~~~--~~Nqd~~~lsvGs~~Gyk~~~~~~~-~k~~~~~~~~~~IvEmLFSSSLvaiV~~-~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 6 PTINFI--GFNQDSTLLSVGSKDGYKIFSCSPF-EKCFSKDTEGVSIVEMLFSSSLVAIVSI-KQPRKLKVVHFKKKTTI 81 (391)
T ss_pred cceeee--eeccceeEEEccCCCceeEEecCch-HHhhcccCCCeEEEEeecccceeEEEec-CCCceEEEEEcccCceE
Confidence 445666 6788888888877555678887651 222222222 222222223455555533 33467999999988777
Q ss_pred eeeccccccccCCCCcceEEEEcCCCCeEeecc--EEEEcCCCcceeeeccC-CCce-EEEEec--CCCEEEEEe-----
Q 000177 1631 AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--ILWDRRNSVPVHRFDQF-TDHG-GGGFHP--AGNEVIINS----- 1699 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--rLWDlrtgk~I~kf~gh-~~~V-sVaFSP--dG~~LASGS----- 1699 (1922)
..+. -.+.+-.+.++.+.-.++--. +|||+++-++++++..- .+.. -++++| .+.|++--+
T Consensus 82 Ce~~--------fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 82 CEIF--------FPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred EEEe--------cCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 6654 123333344444322222222 99999999999998765 2332 445555 455888766
Q ss_pred --EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-
Q 000177 1700 --EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV- 1774 (1922)
Q Consensus 1700 --eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv- 1774 (1922)
.|||+.+-+.+.++..|.. -+++||++|.+|++++. ..+.+|++...+.+.+..+.-
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASe------------------KGTVIRVf~v~~G~kl~eFRRG 215 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASE------------------KGTVIRVFSVPEGQKLYEFRRG 215 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEecc------------------CceEEEEEEcCCccEeeeeeCC
Confidence 3999999999999999988 69999999999999953 235678888777776655532
Q ss_pred --CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCCC
Q 000177 1775 --DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRR 1814 (1922)
Q Consensus 1775 --kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~r 1814 (1922)
-..|+.++|+|+..+|++.. +. .+|.+|.++...
T Consensus 216 ~~~~~IySL~Fs~ds~~L~~sS----~T--eTVHiFKL~~~~ 251 (391)
T KOG2110|consen 216 TYPVSIYSLSFSPDSQFLAASS----NT--ETVHIFKLEKVS 251 (391)
T ss_pred ceeeEEEEEEECCCCCeEEEec----CC--CeEEEEEecccc
Confidence 22499999999999999873 22 467888776554
No 244
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=1e-06 Score=103.93 Aligned_cols=142 Identities=11% Similarity=0.126 Sum_probs=103.0
Q ss_pred eecccCCccccccce---eeecCc-eeeEEecC-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec--cC
Q 000177 1478 KSTYSGVHRNRRDRQ---FVYSRF-RPWRTCRD-DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT--SH 1550 (1922)
Q Consensus 1478 ~~~~Gg~~g~r~dr~---fi~srf-rpirtLrg-H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~--gH 1550 (1922)
+...||.+.....|+ .+.++. +|++.... |. +.|.|++|.-..++|++|..+++|.+.|+.+.+.+..+. ..
T Consensus 70 ~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~-SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~ 148 (609)
T KOG4227|consen 70 FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHR-SNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNN 148 (609)
T ss_pred EEeecCCcceeeeechHHHHhhcCCCCceeccCccc-cceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCc
Confidence 344556554444444 345555 88887665 55 889999999999999999999999999999998887774 33
Q ss_pred CCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEe------ccceeEEEcCC-CCEEEEeecCCCCCeEEEE
Q 000177 1551 QAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSF------EGCKAARFSNS-GNLFAALPTETSDRGILLY 1622 (1922)
Q Consensus 1551 ss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf------~gh~sVaFSPD-G~~LaSgS~~S~DgtIrIW 1622 (1922)
.+.|+.+ ..+|..+++++ +.++.|.+||.+.. ..++..+ +..+.+.|+|. ..+|++. +..+-+-+|
T Consensus 149 ~~~VY~m--~~~P~DN~~~~~t~~~~V~~~D~Rd~-~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~---~~~~G~~~~ 222 (609)
T KOG4227|consen 149 RGDVYHM--DQHPTDNTLIVVTRAKLVSFIDNRDR-QNPISLVLPANSGKNFYTAEFHPETPALILVN---SETGGPNVF 222 (609)
T ss_pred ccceeec--ccCCCCceEEEEecCceEEEEeccCC-CCCCceeeecCCCccceeeeecCCCceeEEec---cccCCCCce
Confidence 4589999 77887777776 56999999999861 1122211 12377899995 4566665 555668899
Q ss_pred ECCC
Q 000177 1623 DIQT 1626 (1922)
Q Consensus 1623 DlrT 1626 (1922)
|++.
T Consensus 223 D~R~ 226 (609)
T KOG4227|consen 223 DRRM 226 (609)
T ss_pred eecc
Confidence 9874
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=2e-06 Score=105.84 Aligned_cols=225 Identities=16% Similarity=0.196 Sum_probs=153.5
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCce----------------------------eeeccC
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPL----------------------------ESCTSH 1550 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l----------------------------~tL~gH 1550 (1922)
.++.| +|. ..-+.|..+|||+|| +||.+--.|++||+..-... +++.-|
T Consensus 44 LiQdf-e~p-~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 44 LIQDF-EMP-TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred HHHhc-CCc-cccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 34444 355 667899999999965 78889999999998543210 011111
Q ss_pred CC-----------CeeEEEeeec-CCCcEEEEecCCcEEEeccCCCCCCcceEec----cceeEEEcCCCCEEEEeecCC
Q 000177 1551 QA-----------PVTLVQSHLS-GETQLLLSSSSQDVHLWNASSIAGGPMHSFE----GCKAARFSNSGNLFAALPTET 1614 (1922)
Q Consensus 1551 ss-----------~VtsLq~afS-pDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S 1614 (1922)
.. .-..+ +++ +.-.+++.++...|.=+++.. |..+..|. +.++|..++...+|++| +
T Consensus 122 ak~G~hy~~RIP~~GRDm--~y~~~scDly~~gsg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~hgLla~G---t 194 (703)
T KOG2321|consen 122 AKYGRHYRTRIPKFGRDM--KYHKPSCDLYLVGSGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEEHGLLACG---T 194 (703)
T ss_pred hhcCeeeeeecCcCCccc--cccCCCccEEEeecCcceEEEEccc--cccccccccccccceeeeecCccceEEec---c
Confidence 11 01122 111 223355556666677788877 66666554 35899999988888888 8
Q ss_pred CCCeEEEEECCCCceeeeeccccccc--cCC--CCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeec-cCCCce
Q 000177 1615 SDRGILLYDIQTYQLEAKLSDTSVNL--TGR--GHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD-QFTDHG 1684 (1922)
Q Consensus 1615 ~DgtIrIWDlrTgk~i~tL~d~s~~~--~~~--gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~-gh~~~V 1684 (1922)
.+|.|-.||.++...+.++....... .+. ...+..+.|+.+|-.++.|. .|||+++.+++..-+ +..-.|
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI 274 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence 89999999999998888876332211 111 11234499999988888655 899999998865332 223344
Q ss_pred -EEEEecC--CCEEEEEe----EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEE
Q 000177 1685 -GGGFHPA--GNEVIINS----EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1685 -sVaFSPd--G~~LASGS----eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSg 1733 (1922)
.+.|.+. ++.|++.. +|||-.+|+....+..... +.+++-|++-+++++
T Consensus 275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred eeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence 8899877 56788777 5999999999888864443 889999988888887
No 246
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.60 E-value=2.8e-07 Score=112.59 Aligned_cols=161 Identities=16% Similarity=0.286 Sum_probs=121.7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceeeec----cCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCC------
Q 000177 1518 LGDSSHIAVGSHTKELKIFDSNSSSPLESCT----SHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGG------ 1587 (1922)
Q Consensus 1518 SPDG~lLASGS~DGtIkIWDl~tgk~l~tL~----gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk------ 1587 (1922)
.+.+--|+.|-..|.|.+.|....+..+-|. -....|++|.|..-.++.+|++-.+|.+.+||.....+.
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 3567788999999999999876533222221 124789999776666777887778999999976431000
Q ss_pred --------------------cceEec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1588 --------------------PMHSFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1588 --------------------~l~tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
++..+. .++..+|+|||++|++. +.||.++|||..+.+.+..++
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~V---SqDGfLRvF~fdt~eLlg~mk--------- 329 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATV---SQDGFLRIFDFDTQELLGVMK--------- 329 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEE---ecCceEEEeeccHHHHHHHHH---------
Confidence 010000 13668999999999999 999999999999887766554
Q ss_pred CC--cceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEec
Q 000177 1644 GH--AYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHP 1690 (1922)
Q Consensus 1644 gh--~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSP 1690 (1922)
.| .--+++|||||++|+++| .+|.+..++.|..=++|..|| .|+|.|
T Consensus 330 SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 330 SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 22 234599999999999999 899999999999999999999 899997
No 247
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.55 E-value=1.9e-07 Score=112.51 Aligned_cols=194 Identities=15% Similarity=0.208 Sum_probs=149.2
Q ss_pred ccceeeec-CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcE
Q 000177 1489 RDRQFVYS-RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1489 ~dr~fi~s-rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
..+.|+|. .+..+++++.|. .|..+.|-|---+|++++..|.++.-|+.+|+.+..+..-.+.+..+ ..+|-+.+
T Consensus 190 K~y~yvYD~~GtElHClk~~~--~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm--~qNP~NaV 265 (545)
T KOG1272|consen 190 KKYVYVYDNNGTELHCLKRHI--RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVM--KQNPYNAV 265 (545)
T ss_pred hceEEEecCCCcEEeehhhcC--chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchh--hcCCccce
Confidence 33455665 356788888875 79999999999999999999999999999999999997778888888 77888888
Q ss_pred EEEe-cCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1568 LLSS-SSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1568 LaSS-sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
+-.| +.|+|.+|.... ..++..+-. +.++++.++|++++|+ +.|..++|||++....+.++.
T Consensus 266 ih~GhsnGtVSlWSP~s--kePLvKiLcH~g~V~siAv~~~G~YMaTt---G~Dr~~kIWDlR~~~ql~t~~-------- 332 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNS--KEPLVKILCHRGPVSSIAVDRGGRYMATT---GLDRKVKIWDLRNFYQLHTYR-------- 332 (545)
T ss_pred EEEcCCCceEEecCCCC--cchHHHHHhcCCCcceEEECCCCcEEeec---ccccceeEeeeccccccceee--------
Confidence 8776 599999999987 666655443 5889999999999999 899999999999877766664
Q ss_pred CCCcceEEEEcCCCCeEeecc---EEEEcC-CC--cceeeeccC--CCce-EEEEecCCCEEEEEe
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG---ILWDRR-NS--VPVHRFDQF--TDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg---rLWDlr-tg--k~I~kf~gh--~~~V-sVaFSPdG~~LASGS 1699 (1922)
..|....++||..|-+.++-| .||-=. .+ ..-..|-.| ...| .+.|.|-...|-+|.
T Consensus 333 tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 333 TPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred cCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 235666699999988888777 788532 21 121222222 2244 788888777666654
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.52 E-value=2.3e-05 Score=95.67 Aligned_cols=208 Identities=17% Similarity=0.199 Sum_probs=128.6
Q ss_pred CCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CCceee---e--cc--------CCCCeeEEEeeecCCCcEEEEec--
Q 000177 1510 ALLTCITFLGDSSHIAVGSH-TKELKIFDSNS-SSPLES---C--TS--------HQAPVTLVQSHLSGETQLLLSSS-- 1572 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~-DGtIkIWDl~t-gk~l~t---L--~g--------Hss~VtsLq~afSpDG~lLaSSs-- 1572 (1922)
.....++++|++++|+++.. +|+|.+|++.. |..... + .+ -.....++ .|+|++++++..+
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v--~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV--VFSPDGRFVYVPDLG 164 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE--EE-TTSSEEEEEETT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE--EECCCCCEEEEEecC
Confidence 34667999999999999985 89999999976 433222 1 11 12345677 8999999888853
Q ss_pred CCcEEEeccCCCCCCcc--eEec-----cceeEEEcCCCCEEEEeecCCCCCeEEEEECC--CCce--eeeecccccccc
Q 000177 1573 SQDVHLWNASSIAGGPM--HSFE-----GCKAARFSNSGNLFAALPTETSDRGILLYDIQ--TYQL--EAKLSDTSVNLT 1641 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l--~tf~-----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr--Tgk~--i~tL~d~s~~~~ 1641 (1922)
...|.+|++....++.. ..+. +-+.+.|+|++++++... ..+++|.+|++. ++.. +.++. .....
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g~~~~~~~~~--~~~~~ 240 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN--ELSNTVSVFDYDPSDGSLTEIQTIS--TLPEG 240 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEE--SCETT
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec--CCCCcEEEEeecccCCceeEEEEee--ecccc
Confidence 45799999976322221 1221 237899999999887662 567899999998 4432 22222 11111
Q ss_pred CCCC-cceEEEEcCCCCeEeecc------EEEEcC--CCc--ceeeeccCCC-ceEEEEecCCCEEEEEe------EEEe
Q 000177 1642 GRGH-AYSQIHFSPSDTMLLWNG------ILWDRR--NSV--PVHRFDQFTD-HGGGGFHPAGNEVIINS------EVWD 1703 (1922)
Q Consensus 1642 ~~gh-~~~vVaFSPdG~lLaSgg------rLWDlr--tgk--~I~kf~gh~~-~VsVaFSPdG~~LASGS------eIWD 1703 (1922)
..+. ...-+.++|+|++|.... .+|++. +++ .+..+..... +..+.|+|+|++|+++. .+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1122 233399999999887544 788883 343 3334433222 44899999999999988 2665
Q ss_pred c--CCCeEEEEE---cCCCceeEEE
Q 000177 1704 L--RKFRLLRSV---PSLDQTTITF 1723 (1922)
Q Consensus 1704 L--rTgklL~tl---~gH~~~sVaF 1723 (1922)
+ .+|.+.... ......||.|
T Consensus 321 ~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 321 IDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EeCCCCcEEEecccccCCCCEEEeC
Confidence 4 677765443 2223367766
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=2.4e-06 Score=106.42 Aligned_cols=257 Identities=16% Similarity=0.215 Sum_probs=152.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---------------ceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS---------------PLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk---------------~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
....|+.|+....+|+.|+.||.+||..+.+.. .-+++.||+..|.-+ .|+.+.+.|.||+ +
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vv--TWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVV--TWNENNQKLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEE--EeccccccccccCCC
Confidence 468899999999999999999999999875421 124778999999999 8899999999986 9
Q ss_pred CcEEEeccCCCCCCcceEe------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1574 QDVHLWNASSIAGGPMHSF------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
|-|.+|-+-. +...-.. .-+.+++|+-+|..|+.. -.||.|.+=.+........ ...+...
T Consensus 93 GlIiVWmlyk--gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIv---YeDGavIVGsvdGNRIwgK--------eLkg~~l 159 (1189)
T KOG2041|consen 93 GLIIVWMLYK--GSWCEEMINNRNKSVVVSMSWNLDGTKICIV---YEDGAVIVGSVDGNRIWGK--------ELKGQLL 159 (1189)
T ss_pred ceEEEEeeec--ccHHHHHhhCcCccEEEEEEEcCCCcEEEEE---EccCCEEEEeeccceecch--------hcchhec
Confidence 9999999876 4322111 124789999999988877 6778777665553222111 0112233
Q ss_pred eEEEEcCCCCeEee---cc--EEEEcCCCcceeee------------ccCCCce-EEEEe--------cCCCEEEEEeE-
Q 000177 1648 SQIHFSPSDTMLLW---NG--ILWDRRNSVPVHRF------------DQFTDHG-GGGFH--------PAGNEVIINSE- 1700 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaS---gg--rLWDlrtgk~I~kf------------~gh~~~V-sVaFS--------PdG~~LASGSe- 1700 (1922)
.-+.|++|.+.++. .| ++||-.-. -..++ ..+...+ .+.|. |+...++++-.
T Consensus 160 ~hv~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 160 AHVLWSEDLEQALFKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred cceeecccHHHHHhhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 34889999887763 33 78885521 11111 1111112 33332 45566666541
Q ss_pred --E---EecCCCeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-
Q 000177 1701 --V---WDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV- 1774 (1922)
Q Consensus 1701 --I---WDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv- 1774 (1922)
+ -+.....++-.-.+.......||++|.+++.+..+...+--.....-.+-+|+... +.++.+
T Consensus 239 Gr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i-----------~gtlkvp 307 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHI-----------VGTLKVP 307 (1189)
T ss_pred ceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhh-----------eEEEecC
Confidence 1 11111122211122333688999999999987543211110000000111222222 233333
Q ss_pred CCceEEEEEcCCCceEEEE
Q 000177 1775 DRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1775 kr~I~dLa~SPdds~LAVV 1793 (1922)
...|..++|...|-.+|+.
T Consensus 308 g~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 308 GSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred CceeeeeEEcCCceEEEEE
Confidence 3458889998888777755
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.47 E-value=1.1e-05 Score=98.85 Aligned_cols=242 Identities=17% Similarity=0.199 Sum_probs=159.5
Q ss_pred EEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEec--cceeEEEcCCCCEEEEee
Q 000177 1534 KIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFE--GCKAARFSNSGNLFAALP 1611 (1922)
Q Consensus 1534 kIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~--gh~sVaFSPDG~~LaSgS 1611 (1922)
.+|+..+...-..+..-.-++..+ .|||.|.+|++..-..|.+|+-.. ...+.+|. .+..+.|+|++++|.+=+
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~--~~SP~G~~l~~~~~~~V~~~~g~~--~~~l~~~~~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYV--SESPLGTYLFSEHAAGVECWGGPS--KAKLVRFRHPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred EeecCccccccccccccCcchhhe--eecCcchheehhhccceEEccccc--hhheeeeecCCceecccCcccceeeeec
Confidence 345555554444555567788888 889999999999888899999887 33344443 368899999999999864
Q ss_pred cCC------------CCCeEEEEECCCCceeeeeccccccccCCCCcce-EEEEcCCCCeEe---ecc-EEEEcCCCc-c
Q 000177 1612 TET------------SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS-QIHFSPSDTMLL---WNG-ILWDRRNSV-P 1673 (1922)
Q Consensus 1612 ~~S------------~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~-vVaFSPdG~lLa---Sgg-rLWDlrtgk-~ 1673 (1922)
... .++.+.+||+.+|..+..+.-.. ..+..+ .+.|+-++.+++ ..+ +++++ ++. .
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~-----q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~ 164 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS-----QPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIE 164 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccC-----CcccccceeeeeecchhhhhhccCeEEEEec-CCccc
Confidence 332 24469999999999999886111 112344 699999998877 222 88987 432 1
Q ss_pred eeeeccCC-Cce-EEEEecCC--CEEEEEe----------EEEecCCCeEEEE--EcCCCceeEEEccCCCEEEEEEccC
Q 000177 1674 VHRFDQFT-DHG-GGGFHPAG--NEVIINS----------EVWDLRKFRLLRS--VPSLDQTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1674 I~kf~gh~-~~V-sVaFSPdG--~~LASGS----------eIWDLrTgklL~t--l~gH~~~sVaFSPdG~~LaSgs~~d 1737 (1922)
.+-|.... ..+ ...|+|-| ..|+.=. +||.+..+..+.+ +...+.+.+.|++.|++++.-....
T Consensus 165 ~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 165 EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence 22222222 334 67888864 3444433 4888876666544 3344558999999999998642111
Q ss_pred chhhhhhhcccccccCC-cceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEe
Q 000177 1738 LEDVMSAVHTRRVKHPL-FAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1738 ~~dv~s~lh~rr~ksp~-~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe 1794 (1922)
...-++-+ .+.+.+++....+--...+.+.+|.+++|+|.+..+++|.
T Consensus 245 ---------~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 245 ---------TKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ---------eecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEe
Confidence 10111111 2556666655443333336688999999999999999986
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.45 E-value=4e-06 Score=104.26 Aligned_cols=185 Identities=17% Similarity=0.208 Sum_probs=134.3
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceeeec--cC-CCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc
Q 000177 1518 LGDSSHIAVGSHTKELKIFDSNSSSPLESCT--SH-QAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG 1594 (1922)
Q Consensus 1518 SPDG~lLASGS~DGtIkIWDl~tgk~l~tL~--gH-ss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g 1594 (1922)
.|-+.++|..+.||.++||+..+++....|. .| ++..++. .|.+.- ...|.....-
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~--------------------~w~L~~-~~s~~k~~~~ 60 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYT--------------------KWGLSA-DYSPMKWLSL 60 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeE--------------------EEEEEe-ccchHHHHhH
Confidence 3456789999999999999999888766552 11 2222233 333322 0122221111
Q ss_pred ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCCCeEeecc-----EEEE
Q 000177 1595 CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLLWNG-----ILWD 1667 (1922)
Q Consensus 1595 h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLaSgg-----rLWD 1667 (1922)
.+...-+.+-..++-| ...|.|.+|++..|+...++. ..+|..++ +.++.+-..|.+++ ..|+
T Consensus 61 ~~~~~~s~~t~~lvlg---t~~g~v~~ys~~~g~it~~~s-------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~ 130 (541)
T KOG4547|consen 61 EKAKKASLDTSMLVLG---TPQGSVLLYSVAGGEITAKLS-------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYIL 130 (541)
T ss_pred HHHhhccCCceEEEee---cCCccEEEEEecCCeEEEEEe-------cCCCCCcceeeecccccCceEecCCceeEEEEe
Confidence 1111223344567777 778999999999999888775 12455444 77788888888887 8999
Q ss_pred cCCCcceeeeccCCCce-EEEEecCCCEEEEEe---EEEecCCCeEEEEEcCCCc--eeEEEccC-----CCEEEEE
Q 000177 1668 RRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS---EVWDLRKFRLLRSVPSLDQ--TTITFNAR-----GDVIYAI 1733 (1922)
Q Consensus 1668 lrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS---eIWDLrTgklL~tl~gH~~--~sVaFSPd-----G~~LaSg 1733 (1922)
...++.++.+...+..+ +++.+|||..+++++ ++||+.+.+.+.+|.||.. +++.|--+ |.++.++
T Consensus 131 ~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 131 EKEKVIIRIWKEQKPLVSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred cccceeeeeeccCCCccceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence 99999999999888777 999999999999999 5999999999999999987 78888776 7777765
No 252
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.45 E-value=4.1e-05 Score=89.92 Aligned_cols=209 Identities=15% Similarity=0.240 Sum_probs=140.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE--ec------CCcEEEeccC
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS--SS------SQDVHLWNAS 1582 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS--Ss------DgtVkLWDl~ 1582 (1922)
....++|+.|...+++|..+| .+||+++..+...+-.-+.+.+.-+.+-| ..++|+- |. -..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 456799999999999998888 69999987555433333333333222223 2234433 32 2479999954
Q ss_pred CCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECC-CCceeeeeccccccccCCCCcceEEEEcCCC--
Q 000177 1583 SIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQ-TYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD-- 1656 (1922)
Q Consensus 1583 t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr-Tgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG-- 1656 (1922)
. ..++.++. .+..+.+.++ +|+.. ..+.|.||... .-+.+..+. +. ..+...++..|.-
T Consensus 84 k--~~~i~el~f~~~I~~V~l~r~--riVvv----l~~~I~VytF~~n~k~l~~~e-t~------~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 84 K--ERCIIELSFNSEIKAVKLRRD--RIVVV----LENKIYVYTFPDNPKLLHVIE-TR------SNPKGLCSLCPTSNK 148 (346)
T ss_pred c--CcEEEEEEeccceeeEEEcCC--eEEEE----ecCeEEEEEcCCChhheeeee-cc------cCCCceEeecCCCCc
Confidence 4 56665553 3678888764 45543 35789999987 455555554 11 1122234455433
Q ss_pred CeEeecc------EEEEcCCCcc--eeeeccCCCce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEc-CCCc--
Q 000177 1657 TMLLWNG------ILWDRRNSVP--VHRFDQFTDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVP-SLDQ-- 1718 (1922)
Q Consensus 1657 ~lLaSgg------rLWDlrtgk~--I~kf~gh~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~-gH~~-- 1718 (1922)
.+|+.-| .|-|+...+. ...+..|...| +++.+-+|..||++| +|||..+|+++..+. |.+.
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD 228 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence 3454333 7888876544 46678899989 999999999999999 699999999999987 3322
Q ss_pred -eeEEEccCCCEEEEEEccC
Q 000177 1719 -TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1719 -~sVaFSPdG~~LaSgs~~d 1737 (1922)
.+++|||++.+|++++...
T Consensus 229 iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred EEEEEeCCCccEEEEEcCCC
Confidence 8999999999999986544
No 253
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.41 E-value=5.6e-05 Score=90.17 Aligned_cols=215 Identities=13% Similarity=0.136 Sum_probs=146.1
Q ss_pred EEEEcC-CCCEEEEEeCCCc-EEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe------cCCcEEEeccCCCC
Q 000177 1514 CITFLG-DSSHIAVGSHTKE-LKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS------SSQDVHLWNASSIA 1585 (1922)
Q Consensus 1514 ~LaFSP-DG~lLASGS~DGt-IkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS------sDgtVkLWDl~t~~ 1585 (1922)
.++.+| ++..++.+-.-|+ ..+||..+++....+....+.-+.=.-.||+||++|.+. ..|.|-|||... .
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~ 87 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-G 87 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-C
Confidence 377888 6667788888775 578999999887665433222221111799999999986 256799999983 1
Q ss_pred CCcceEeccc----eeEEEcCCCCEEEEeecC---------------CCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1586 GGPMHSFEGC----KAARFSNSGNLFAALPTE---------------TSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1586 gk~l~tf~gh----~sVaFSPDG~~LaSgS~~---------------S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
.+.+..|..+ +.+.+.|||+.|+.+-.+ +.+-.+.+.|..+|+.+....-+ ...+..+
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp---~~~~~lS 164 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP---PDLHQLS 164 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC---ccccccc
Confidence 4555666643 778999999888876221 13445666777888877664300 0001112
Q ss_pred ceEEEEcCCCCeEeecc----------EEEEcCCCcceeeec-------cCCCce-EEEEecCCCEEEEEe------EEE
Q 000177 1647 YSQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFD-------QFTDHG-GGGFHPAGNEVIINS------EVW 1702 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~-------gh~~~V-sVaFSPdG~~LASGS------eIW 1702 (1922)
..-++++++|..++..- .+.-.+.+..+.-+. ...+.+ +|+|+++|.++++.+ -+|
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 23399999988776332 344444444443332 345667 999999999998888 399
Q ss_pred ecCCCeEEEEEcCCCceeEEEccCCCEEEEE
Q 000177 1703 DLRKFRLLRSVPSLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1703 DLrTgklL~tl~gH~~~sVaFSPdG~~LaSg 1733 (1922)
|..+++++....-.+.|.|+-.+++ ++++.
T Consensus 245 d~~tg~~~~~~~l~D~cGva~~~~~-f~~ss 274 (305)
T PF07433_consen 245 DAATGRLLGSVPLPDACGVAPTDDG-FLVSS 274 (305)
T ss_pred ECCCCCEeeccccCceeeeeecCCc-eEEeC
Confidence 9999999999888888999998888 66654
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.40 E-value=8.4e-07 Score=118.98 Aligned_cols=204 Identities=20% Similarity=0.323 Sum_probs=153.2
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASS 1583 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t 1583 (1922)
.|- ..|.++.=+|...+-+||+.||.|++|....++.+..+ .+-...|+.+ .|+.+|..+..+ .||.+.+|.+.
T Consensus 2206 ~~v-~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~--~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2206 HPV-ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS--RFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred ccc-CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh--hhcccCCceeeeccCCceeecccC-
Confidence 344 66888888888889999999999999999999888877 3334788888 788888877776 59999999997
Q ss_pred CCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1584 IAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1584 ~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
.++...++.| +.+.|-. ..+++.+..+.++.+.+||..-.....-+. ..|.+...++++-|.-+++
T Consensus 2282 --pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~------~~H~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2282 --PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH------TCHDGGATVLAYAPKHQLL 2351 (2439)
T ss_pred --CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee------eecCCCceEEEEcCcceEE
Confidence 3566666665 4455554 667777777788999999976322111111 2245667779999999999
Q ss_pred eecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-eeEEEccCCC
Q 000177 1660 LWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-TTITFNARGD 1728 (1922)
Q Consensus 1660 aSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-~sVaFSPdG~ 1728 (1922)
++|| ++||++..+.+|+|+. ++ ...++++|+ +||++....++++++.... ..+ |-..|.
T Consensus 2352 isggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf-Fr~~g~ 2421 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF-FRNIGM 2421 (2439)
T ss_pred EecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch-hhhcCc
Confidence 9999 8999999999999976 44 456777777 6999999999999884323 344 655565
Q ss_pred EEEEE
Q 000177 1729 VIYAI 1733 (1922)
Q Consensus 1729 ~LaSg 1733 (1922)
.+..+
T Consensus 2422 Q~~v~ 2426 (2439)
T KOG1064|consen 2422 QINVG 2426 (2439)
T ss_pred eeeec
Confidence 55444
No 255
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=4e-06 Score=103.35 Aligned_cols=161 Identities=15% Similarity=0.276 Sum_probs=126.9
Q ss_pred EEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEec---------
Q 000177 1524 IAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFE--------- 1593 (1922)
Q Consensus 1524 LASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~--------- 1593 (1922)
|++++....|+-+|++.|..+.-|.-..+++++| ..++-..+|++|. +|.|-.||.++ ...+.++.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v--~in~~hgLla~Gt~~g~VEfwDpR~--ksrv~~l~~~~~v~s~p 223 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV--SINEEHGLLACGTEDGVVEFWDPRD--KSRVGTLDAASSVNSHP 223 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceee--eecCccceEEecccCceEEEecchh--hhhheeeecccccCCCc
Confidence 5556666679999999999999998778999999 7889999999976 99999999987 33333332
Q ss_pred ------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCC--CCeEeecc
Q 000177 1594 ------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPS--DTMLLWNG 1663 (1922)
Q Consensus 1594 ------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPd--G~lLaSgg 1663 (1922)
.++++.|+.+|-.+++| +..|.|.|||+++.+++..-. |++..++ +.|.+. +..|++..
T Consensus 224 g~~~~~svTal~F~d~gL~~aVG---ts~G~v~iyDLRa~~pl~~kd--------h~~e~pi~~l~~~~~~~q~~v~S~D 292 (703)
T KOG2321|consen 224 GGDAAPSVTALKFRDDGLHVAVG---TSTGSVLIYDLRASKPLLVKD--------HGYELPIKKLDWQDTDQQNKVVSMD 292 (703)
T ss_pred cccccCcceEEEecCCceeEEee---ccCCcEEEEEcccCCceeecc--------cCCccceeeecccccCCCceEEecc
Confidence 14789999999999998 889999999999988776543 4555554 888776 45677766
Q ss_pred ----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1664 ----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1664 ----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
+|||-.+|++...+..-.....+|+-|++-.+.++.
T Consensus 293 k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 293 KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEec
Confidence 999999999988776555433788889887777775
No 256
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.40 E-value=2e-05 Score=100.97 Aligned_cols=253 Identities=13% Similarity=0.167 Sum_probs=152.8
Q ss_pred CcEEEEECCCC-CceeeeccCCCCeeEEEeeecCCC-cEEEEec-CCcEEEeccCCCCCCcceEec--c------ceeEE
Q 000177 1531 KELKIFDSNSS-SPLESCTSHQAPVTLVQSHLSGET-QLLLSSS-SQDVHLWNASSIAGGPMHSFE--G------CKAAR 1599 (1922)
Q Consensus 1531 GtIkIWDl~tg-k~l~tL~gHss~VtsLq~afSpDG-~lLaSSs-DgtVkLWDl~t~~gk~l~tf~--g------h~sVa 1599 (1922)
+.+.||++... ++...+. -...|+++ .|+|.. .+|++|. +|.|.+||++.....+...+. . ++.+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~--~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCL--KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEE--EeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 47999999765 4445554 35789999 777754 4555554 999999999873222122221 1 26677
Q ss_pred EcCC--CCEEEEeecCCCCCeEEEEECCCCce-eeeec-cccc---cccCCCCcceEEEEcCCCCe-Eeecc---EEEE-
Q 000177 1600 FSNS--GNLFAALPTETSDRGILLYDIQTYQL-EAKLS-DTSV---NLTGRGHAYSQIHFSPSDTM-LLWNG---ILWD- 1667 (1922)
Q Consensus 1600 FSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~-i~tL~-d~s~---~~~~~gh~~~vVaFSPdG~l-LaSgg---rLWD- 1667 (1922)
|-.+ +.-|+++ +.||.|+.|+++.-.. ...+. .... ......+...++.|.|.... ++.|+ .|+-
T Consensus 299 W~~~~~~~~f~s~---ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 299 WLQNEHNTEFFSL---SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EeccCCCCceEEE---ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 8664 3448888 7799999998875332 11111 0000 01112344556899887643 33443 5554
Q ss_pred cCCC---------cceeeeccCCCce-EEEEecCCC-EEEEEe----EEEecC-CCeEEEEEcCCCc--eeEEEccCCCE
Q 000177 1668 RRNS---------VPVHRFDQFTDHG-GGGFHPAGN-EVIINS----EVWDLR-KFRLLRSVPSLDQ--TTITFNARGDV 1729 (1922)
Q Consensus 1668 lrtg---------k~I~kf~gh~~~V-sVaFSPdG~-~LASGS----eIWDLr-TgklL~tl~gH~~--~sVaFSPdG~~ 1729 (1922)
-+.+ +.+..+..|.+.+ ++.++|=+. .+.+++ +||... ...++..+..+.. ++++|||.-..
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCce
Confidence 2222 1233555667777 889999765 344444 699887 5566666655444 78999999887
Q ss_pred EEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC-ceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1730 IYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR-CVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1730 LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr-~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
++++.+.++.-..|.+. ..+..++.+..... ....+.|++.++.+++-. ..+.+.+|
T Consensus 456 vF~~~d~~G~l~iWDLl----------------~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd------~~G~~~~~ 513 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLL----------------QDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD------ANGTTHIL 513 (555)
T ss_pred EEEEEcCCCceehhhhh----------------ccccCCcccccccccccceeecCCCCcEEEEec------CCCcEEEE
Confidence 77775543322222221 23344555554443 366778889999988652 33678888
Q ss_pred Eec
Q 000177 1809 EIG 1811 (1922)
Q Consensus 1809 EVG 1811 (1922)
++.
T Consensus 514 ~l~ 516 (555)
T KOG1587|consen 514 KLS 516 (555)
T ss_pred EcC
Confidence 874
No 257
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=2.8e-06 Score=103.89 Aligned_cols=189 Identities=17% Similarity=0.160 Sum_probs=123.1
Q ss_pred cccCCccccccceeeecCceeeEEec-CCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC----------Cceee
Q 000177 1480 TYSGVHRNRRDRQFVYSRFRPWRTCR-DDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSS----------SPLES 1546 (1922)
Q Consensus 1480 ~~Gg~~g~r~dr~fi~srfrpirtLr-gH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tg----------k~l~t 1546 (1922)
..|..+....+|.. .+.++++.+. ||. ..|.|++|-| +.++++||..|..|++||+... .....
T Consensus 66 ~SGSDD~r~ivWd~--~~~KllhsI~TgHt-aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~ 142 (758)
T KOG1310|consen 66 ASGSDDTRLIVWDP--FEYKLLHSISTGHT-ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRC 142 (758)
T ss_pred eecCCcceEEeecc--hhcceeeeeecccc-cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhh
Confidence 34444444444443 3666666664 799 9999999999 5679999999999999999742 33456
Q ss_pred eccCCCCeeEEEeeecCCC-cEEEE-ecCCcEEEeccCCCCCCcceEe------c-------cceeEEEcCC-CCEEEEe
Q 000177 1547 CTSHQAPVTLVQSHLSGET-QLLLS-SSSQDVHLWNASSIAGGPMHSF------E-------GCKAARFSNS-GNLFAAL 1610 (1922)
Q Consensus 1547 L~gHss~VtsLq~afSpDG-~lLaS-SsDgtVkLWDl~t~~gk~l~tf------~-------gh~sVaFSPD-G~~LaSg 1610 (1922)
+.+|...|..| +..|++ +.+.+ +.||+|+-+|++... .|.... . ...++..+|. ..+|+.|
T Consensus 143 ~~cht~rVKri--a~~p~~PhtfwsasEDGtirQyDiREph-~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVG 219 (758)
T KOG1310|consen 143 WSCHTDRVKRI--ATAPNGPHTFWSASEDGTIRQYDIREPH-VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVG 219 (758)
T ss_pred hhhhhhhhhhe--ecCCCCCceEEEecCCcceeeecccCCc-cCCccccccHHHHHhchhhheeeeeeecCCCCceEEec
Confidence 78999999999 667777 44444 679999999998621 111111 1 1278999995 5677777
Q ss_pred ecCCCCCeEEEEECCCCc------------------eeeeeccccc-cccC-CCCcceE---EEEcCCCCeEe-e-cc--
Q 000177 1611 PTETSDRGILLYDIQTYQ------------------LEAKLSDTSV-NLTG-RGHAYSQ---IHFSPSDTMLL-W-NG-- 1663 (1922)
Q Consensus 1611 S~~S~DgtIrIWDlrTgk------------------~i~tL~d~s~-~~~~-~gh~~~v---VaFSPdG~lLa-S-gg-- 1663 (1922)
+.|-.+++||.+... |+.-|.+..+ +..+ ..+...+ ++|+|+|.-|+ + +|
T Consensus 220 ---gsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEh 296 (758)
T KOG1310|consen 220 ---GSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEH 296 (758)
T ss_pred ---CCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeE
Confidence 889999999954211 1111111111 0000 1111111 89999996554 3 34
Q ss_pred -EEEEcCCCcceeee
Q 000177 1664 -ILWDRRNSVPVHRF 1677 (1922)
Q Consensus 1664 -rLWDlrtgk~I~kf 1677 (1922)
+++|+..++....|
T Consensus 297 VYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 297 VYLFDVNEDKSPTPY 311 (758)
T ss_pred EEEEeecCCCCceee
Confidence 89999988765544
No 258
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.36 E-value=2.1e-06 Score=98.20 Aligned_cols=147 Identities=18% Similarity=0.266 Sum_probs=106.8
Q ss_pred CCEEEEEEcC-CCC--EEEEEeCCCcEEEEECCCCC----------ceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCc
Q 000177 1510 ALLTCITFLG-DSS--HIAVGSHTKELKIFDSNSSS----------PLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQD 1575 (1922)
Q Consensus 1510 ~~Vt~LaFSP-DG~--lLASGS~DGtIkIWDl~tgk----------~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgt 1575 (1922)
+.|.|..+.. +++ +|+.|-.+|.|.+||+.++. ....+..|..+|.++ .|.+.-.-=++ |.+..
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl--dyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL--DYASSCDRGISGGADDK 228 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceee--eechhhcCCcCCCcccc
Confidence 6678877554 343 66788899999999999873 334456799999999 44332111122 34667
Q ss_pred EEEeccCCCCCCcc----eEe--ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1576 VHLWNASSIAGGPM----HSF--EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l----~tf--~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
+..|+++...+.+. .++ .|+..+.+-||++.++++ +.|+.|+||..++.+.+..++ .|...++.
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATA---GWD~RiRVyswrtl~pLAVLk-------yHsagvn~ 298 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATA---GWDHRIRVYSWRTLNPLAVLK-------YHSAGVNA 298 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeec---ccCCcEEEEEeccCCchhhhh-------hhhcceeE
Confidence 88888865222221 122 246789999999999999 999999999999999888775 23445566
Q ss_pred EEEcCCCCeEeecc-----EEEEc
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDR 1668 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDl 1668 (1922)
++|+|+..+++.++ .+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 99999999999888 78875
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.35 E-value=0.00043 Score=84.96 Aligned_cols=251 Identities=10% Similarity=0.110 Sum_probs=150.2
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE--e---------cCCcEEEeccCCCCCCcceEecc-----
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS--S---------SSQDVHLWNASSIAGGPMHSFEG----- 1594 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS--S---------sDgtVkLWDl~t~~gk~l~tf~g----- 1594 (1922)
++|.+.|..+++.+.++..-..+-. .+|||++.|.. + .+..|.+||..+ .+.+..+.-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~----~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP----VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce----eECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEEccCCCch
Confidence 8999999999998888843222221 24899987765 4 467899999998 777766642
Q ss_pred ------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-EEEE
Q 000177 1595 ------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-ILWD 1667 (1922)
Q Consensus 1595 ------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-rLWD 1667 (1922)
-..++++|||++++.. ..+.+..|.++|+.+++.+..+.-+. ...++..+.+..++.+.. .+..
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~-n~~p~~~V~VvD~~~~kvv~ei~vp~--------~~~vy~t~e~~~~~~~~Dg~~~~ 171 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFY-QFSPSPAVGVVDLEGKAFVRMMDVPD--------CYHIFPTANDTFFMHCRDGSLAK 171 (352)
T ss_pred hhccCccceEEECCCCCEEEEe-cCCCCCEEEEEECCCCcEEEEEeCCC--------CcEEEEecCCccEEEeecCceEE
Confidence 1478999999998876 22448999999999999999886211 111122322222222211 1000
Q ss_pred --c-CCCc----ceeeeccCCCce--EEEEec-CCCEEEEEeE----EEecC-----CCeEEEEEcCCC---c------e
Q 000177 1668 --R-RNSV----PVHRFDQFTDHG--GGGFHP-AGNEVIINSE----VWDLR-----KFRLLRSVPSLD---Q------T 1719 (1922)
Q Consensus 1668 --l-rtgk----~I~kf~gh~~~V--sVaFSP-dG~~LASGSe----IWDLr-----TgklL~tl~gH~---~------~ 1719 (1922)
+ .+|+ ....|+.....+ .-.|.+ +|.++....+ +.|+. ..+.+..+.... . .
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q 251 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ 251 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence 0 0111 111122211111 114455 7776655542 44532 222233222110 0 2
Q ss_pred eEEEccCCCEEEEEEccCchhhhhhhcccccccC-CcceEEEEecCCCceeeeeccCCceEEEEEcCCCc-eEEEEecCC
Q 000177 1720 TITFNARGDVIYAILRRNLEDVMSAVHTRRVKHP-LFAAFRTVDAINYSDIATIPVDRCVLDFATERTDS-FVGLITMDD 1797 (1922)
Q Consensus 1720 sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp-~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds-~LAVVe~dd 1797 (1922)
-++++|+|+.+|........ + .|. -.+.+.++|..+.+.+..+.+...++.++++|+++ .+.+....
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~--~--------thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~- 320 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAK--W--------THKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTG- 320 (352)
T ss_pred eEEEcCCCCEEEEEecCCcc--c--------cccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCC-
Confidence 49999999999985322111 0 111 23578899999999999999999999999999999 55554311
Q ss_pred CCCccceEEEEEec
Q 000177 1798 QEDMFSSARIYEIG 1811 (1922)
Q Consensus 1798 s~d~dSsVRLyEVG 1811 (1922)
.+.+.++++.
T Consensus 321 ----s~~VsViD~~ 330 (352)
T TIGR02658 321 ----DKTLYIFDAE 330 (352)
T ss_pred ----CCcEEEEECc
Confidence 2345566553
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.32 E-value=0.00034 Score=85.86 Aligned_cols=245 Identities=14% Similarity=0.099 Sum_probs=140.2
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCceeeeccCCC-----CeeEEEee
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSH----------TKELKIFDSNSSSPLESCTSHQA-----PVTLVQSH 1560 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~----------DGtIkIWDl~tgk~l~tL~gHss-----~VtsLq~a 1560 (1922)
..++.+.++..-. .+ ..+ +||||+.|+++.. +..|.+||+.+++.+..+.--.. ......+.
T Consensus 35 ~~~~v~g~i~~G~-~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ 111 (352)
T TIGR02658 35 EAGRVLGMTDGGF-LP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTS 111 (352)
T ss_pred CCCEEEEEEEccC-CC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEE
Confidence 3555566555311 11 124 9999998887766 78999999999999887752111 11111237
Q ss_pred ecCCCcEEEEe--c-CCcEEEeccCCCCCCcceEecc--cee-EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1561 LSGETQLLLSS--S-SQDVHLWNASSIAGGPMHSFEG--CKA-ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1561 fSpDG~lLaSS--s-DgtVkLWDl~t~~gk~l~tf~g--h~s-VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
++|||++|..+ + +..|.++|+.+ ++.+.++.- +.. ...+.+..+ +.| .|+.....-+.+.....+-.
T Consensus 112 ls~dgk~l~V~n~~p~~~V~VvD~~~--~kvv~ei~vp~~~~vy~t~e~~~~-~~~----~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 112 LTPDNKTLLFYQFSPSPAVGVVDLEG--KAFVRMMDVPDCYHIFPTANDTFF-MHC----RDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred ECCCCCEEEEecCCCCCEEEEEECCC--CcEEEEEeCCCCcEEEEecCCccE-EEe----ecCceEEEEecCCCceEEee
Confidence 89999988864 3 88999999998 776666542 111 112222222 111 23333322222111111100
Q ss_pred cccccc---cCCCCcceEEEEcC-CCCeEeecc----EEEEcCC-----CcceeeeccCC---Cc----e-EEEEecCCC
Q 000177 1635 DTSVNL---TGRGHAYSQIHFSP-SDTMLLWNG----ILWDRRN-----SVPVHRFDQFT---DH----G-GGGFHPAGN 1693 (1922)
Q Consensus 1635 d~s~~~---~~~gh~~~vVaFSP-dG~lLaSgg----rLWDlrt-----gk~I~kf~gh~---~~----V-sVaFSPdG~ 1693 (1922)
.+.... ....++ .|.+ +|+++.... .+.|+.. .+.+..+.... ++ . -++++|+|+
T Consensus 185 ~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 185 TEVFHPEDEYLINHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred eeeecCCccccccCC----ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 000000 000111 3445 676665333 5556332 22333322111 11 1 489999999
Q ss_pred EEEEE-------------eE--EEecCCCeEEEEEc-CCCceeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCcc
Q 000177 1694 EVIIN-------------SE--VWDLRKFRLLRSVP-SLDQTTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLFA 1756 (1922)
Q Consensus 1694 ~LASG-------------Se--IWDLrTgklL~tl~-gH~~~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~s 1756 (1922)
.+... .+ ++|..+++.+..++ ++..+.++|+|+|+ .+++... ...
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~------------------~s~ 322 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST------------------GDK 322 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC------------------CCC
Confidence 88773 23 67899999999988 55569999999999 8887732 123
Q ss_pred eEEEEecCCCceeeee
Q 000177 1757 AFRTVDAINYSDIATI 1772 (1922)
Q Consensus 1757 sFrt~Da~dys~IaTi 1772 (1922)
.+.++|..+.+.+.++
T Consensus 323 ~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 323 TLYIFDAETGKELSSV 338 (352)
T ss_pred cEEEEECcCCeEEeee
Confidence 4678888888888877
No 261
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=3.6e-05 Score=96.65 Aligned_cols=138 Identities=11% Similarity=0.163 Sum_probs=90.5
Q ss_pred CEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec---CCcEEEeccC
Q 000177 1511 LLTCITFLGDSSH-IAVGSHT---KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS---SQDVHLWNAS 1582 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~l-LASGS~D---GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss---DgtVkLWDl~ 1582 (1922)
.+..-.|||||+. ++..+.+ ..|.++|+.+++...... ..+.+... .|+|||+.|+. .+ +..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~--~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVS--DVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEee--EECCCCCEEEEEEccCCCcEEEEEECC
Confidence 5678999999985 6654443 568999998887644333 34445555 78999986654 22 4568888887
Q ss_pred CCCCCc--ceEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1583 SIAGGP--MHSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1583 t~~gk~--l~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
. +.. +....+ .....|+|||+.|+..+.......|.++|+.+++...... .+.. ...|+|+|++|
T Consensus 266 ~--g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--------~g~~--~~~~SPDG~~I 333 (419)
T PRK04043 266 T--KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--------HGKN--NSSVSTYKNYI 333 (419)
T ss_pred C--CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--------CCCc--CceECCCCCEE
Confidence 6 332 222222 3557899999988887544444478888998877643322 1211 24899999988
Q ss_pred eecc
Q 000177 1660 LWNG 1663 (1922)
Q Consensus 1660 aSgg 1663 (1922)
+...
T Consensus 334 a~~~ 337 (419)
T PRK04043 334 VYSS 337 (419)
T ss_pred EEEE
Confidence 7543
No 262
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=9.5e-05 Score=92.89 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=103.3
Q ss_pred CeeEEEeeecCCCcE-EEE-ec---CCcEEEeccCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCC
Q 000177 1553 PVTLVQSHLSGETQL-LLS-SS---SQDVHLWNASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~l-LaS-Ss---DgtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT 1626 (1922)
.+..- .|+|||+. ++. +. ...|.++|+.+...+.+..+.+. ....|+|||+.++.......+..|.++|+.+
T Consensus 189 ~~~~p--~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFP--KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeE--EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 44444 89999984 543 42 45699999987222233344443 4578999999887654444567789999988
Q ss_pred CceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceeee-ccCCCceEEEEecCCCEEEE
Q 000177 1627 YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRF-DQFTDHGGGGFHPAGNEVII 1697 (1922)
Q Consensus 1627 gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf-~gh~~~VsVaFSPdG~~LAS 1697 (1922)
++... +.. ..+ ......|+|||+.|+-.+ .++|+.+++..+.. .+.. ...|+|+|++|+.
T Consensus 267 g~~~~-LT~------~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~---~~~~SPDG~~Ia~ 335 (419)
T PRK04043 267 KTLTQ-ITN------YPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN---NSSVSTYKNYIVY 335 (419)
T ss_pred CcEEE-ccc------CCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc---CceECCCCCEEEE
Confidence 76433 331 011 112267999998777333 66777776653322 2221 2489999998876
Q ss_pred EeE--------------EEecCCCeEEEEEcCC-CceeEEEccCCCEEEEEE
Q 000177 1698 NSE--------------VWDLRKFRLLRSVPSL-DQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1698 GSe--------------IWDLrTgklL~tl~gH-~~~sVaFSPdG~~LaSgs 1734 (1922)
.+. +.|+.++.. +.+... ......|+|||+.|+...
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEEE
Confidence 651 235555543 333322 224689999999888763
No 263
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.25 E-value=9.7e-06 Score=94.94 Aligned_cols=160 Identities=17% Similarity=0.205 Sum_probs=112.3
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCC--CceeeeccCCCCeeEEEeeecCCCcEEEEec-C
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDS-NSS--SPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S 1573 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl-~tg--k~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D 1573 (1922)
..+.++|..|. ..|++|.|+|..+.|++|+.|..-+||.. ..+ ++...+.-|+..+++| .|+|.++.+++++ -
T Consensus 45 w~~~htls~Hd-~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V--~WsP~enkFAVgSga 121 (361)
T KOG1523|consen 45 WEPAHTLSEHD-KIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCV--KWSPKENKFAVGSGA 121 (361)
T ss_pred ceeceehhhhC-cceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeE--eecCcCceEEeccCc
Confidence 56788999999 99999999999999999999999999998 333 3445667799999999 7899999999855 7
Q ss_pred CcEEEeccCCCCCC--cceE---e-ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc---------
Q 000177 1574 QDVHLWNASSIAGG--PMHS---F-EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV--------- 1638 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk--~l~t---f-~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~--------- 1638 (1922)
..|.||=++..+.= ..+. + ..+.++.|||++-.+++| +.|+..++|..--......-.++.+
T Consensus 122 r~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG---s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~l 198 (361)
T KOG1523|consen 122 RLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG---STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQL 198 (361)
T ss_pred cEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc---ccCcceeEEEEeeeccccCCCCCCCccCCcHHHH
Confidence 78888877652110 0011 1 125899999999999998 8899999986421100000000000
Q ss_pred ccc--CCCCcceEEEEcCCCCeEeecc
Q 000177 1639 NLT--GRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1639 ~~~--~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
... ..+.-...+.|+|+|..|+..+
T Consensus 199 m~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 199 MSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred HHhhccCCCceeeeEeCCCCCEeeEec
Confidence 000 1112223399999999998666
No 264
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=2.7e-06 Score=103.33 Aligned_cols=170 Identities=15% Similarity=0.272 Sum_probs=120.8
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CCceeeeccCCCCeeEEEeeecCCCcEEEEecC
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS-------SSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t-------gk~l~tL~gHss~VtsLq~afSpDG~lLaSSsD 1573 (1922)
+..|.||+ ..|..++--.+.+-++++|+|++||+|.+.. ..+..+++.|+.+|.++ .|-.+.+++++ .|
T Consensus 728 L~nf~GH~-~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~i--gfL~~lr~i~S-cD 803 (1034)
T KOG4190|consen 728 LCNFTGHQ-EKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDI--GFLADLRSIAS-CD 803 (1034)
T ss_pred eecccCcH-HHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccce--eeeeccceeee-cc
Confidence 34678999 8899988777888899999999999999853 34677899999999999 77777766654 57
Q ss_pred CcEEEeccCCCCCCcceEecc------ceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG------CKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g------h~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
+.|.+||.-. ++++..... ...+.--++ ...++.+ + +...+|+++|.+.+.....+. ..+..+.+.
T Consensus 804 ~giHlWDPFi--gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAg-c-saeSTVKl~DaRsce~~~E~k--Vcna~~Pna 877 (1034)
T KOG4190|consen 804 GGIHLWDPFI--GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAG-C-SAESTVKLFDARSCEWTCELK--VCNAPGPNA 877 (1034)
T ss_pred Ccceeecccc--cchhHhhhcCcccCCCceeEecccCcchheeee-c-cchhhheeeecccccceeeEE--eccCCCCch
Confidence 7799999865 555543321 122322332 3333333 1 677899999999887666654 122222334
Q ss_pred cceEEEEcCCCCeEe---ecc--EEEEcCCCcceeeeccC
Q 000177 1646 AYSQIHFSPSDTMLL---WNG--ILWDRRNSVPVHRFDQF 1680 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLa---Sgg--rLWDlrtgk~I~kf~gh 1680 (1922)
...+++..|.|++++ +.| .+.|.|+|+.|..+...
T Consensus 878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 445599999999987 334 89999999988877543
No 265
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.23 E-value=3.9e-06 Score=109.31 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=108.9
Q ss_pred ecccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee-eeccCCCCeeEE
Q 000177 1479 STYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE-SCTSHQAPVTLV 1557 (1922)
Q Consensus 1479 ~~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~-tL~gHss~VtsL 1557 (1922)
-..|...+...+|.+. ..-+|+ -+.||. +.|..+.|+-||.++++.|.|.++++|++++.+... +.-+|+..|+.+
T Consensus 148 i~~gsv~~~iivW~~~-~dn~p~-~l~GHe-G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPH-EDNKPI-RLKGHE-GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC 224 (967)
T ss_pred EEeccccccEEEEecc-ccCCcc-eecccC-CceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence 3445555566677775 333444 478999 999999999999999999999999999999998776 778999999999
Q ss_pred EeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEeccc-----eeEEEcCCCCEEEEeecCCCCCeEEEEECCC
Q 000177 1558 QSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC-----KAARFSNSGNLFAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1558 q~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh-----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT 1626 (1922)
.|.|+ .++| |.|.+.++|+.+ +..+..+.+| +.++.+++.-..+|+ +.|+.+++||...
T Consensus 225 --~~~~n--~i~t~gedctcrvW~~~---~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~---g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 225 --CFLPN--RIITVGEDCTCRVWGVN---GTQLEVYDEHSGKGIWKIAVPIGVIIKVTG---GNDSTLKLWDLNG 289 (967)
T ss_pred --Eeccc--eeEEeccceEEEEEecc---cceehhhhhhhhcceeEEEEcCCceEEEee---ccCcchhhhhhhc
Confidence 78887 5555 779999999876 3445566554 888999988888998 8899999999864
No 266
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.17 E-value=8.3e-06 Score=94.60 Aligned_cols=219 Identities=17% Similarity=0.306 Sum_probs=139.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-----ceeeeccCC------------CCeeEEEee-ecCCCcEEEEe
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS-----PLESCTSHQ------------APVTLVQSH-LSGETQLLLSS 1571 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk-----~l~tL~gHs------------s~VtsLq~a-fSpDG~lLaSS 1571 (1922)
+.|+++.|...|.+|++|...|.|.+|.-.... ....|++|. ..|..|.|. -..-..+|+++
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 679999999999999999999999999754322 223456664 346777551 12234588889
Q ss_pred cCCcEEEeccCCCC-----------------CCcceEec------------------------cc----eeEEEcCCCCE
Q 000177 1572 SSQDVHLWNASSIA-----------------GGPMHSFE------------------------GC----KAARFSNSGNL 1606 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~-----------------gk~l~tf~------------------------gh----~sVaFSPDG~~ 1606 (1922)
.|.+|+||.+.... +.++.+.+ .| +++.|+.|...
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 99999999986410 11111100 01 56888888888
Q ss_pred EEEeecCCCCCeEEEEECCCCceeeeecc---ccccccCCCCcceEEEEcCCCCeEe--ecc----EEEEcCCCcc----
Q 000177 1607 FAALPTETSDRGILLYDIQTYQLEAKLSD---TSVNLTGRGHAYSQIHFSPSDTMLL--WNG----ILWDRRNSVP---- 1673 (1922)
Q Consensus 1607 LaSgS~~S~DgtIrIWDlrTgk~i~tL~d---~s~~~~~~gh~~~vVaFSPdG~lLa--Sgg----rLWDlrtgk~---- 1673 (1922)
+++ ..|-.|.+|++.-.....++-+ ..+.. .-..+....|+|....++ +.+ ++-|+|....
T Consensus 187 ~lS----aDdLrINLWnl~i~D~sFnIVDiKP~nmee--LteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 187 LLS----ADDLRINLWNLEIIDGSFNIVDIKPHNMEE--LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred eee----ccceeeeeccccccCCceEEEeccCccHHH--HHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 888 4678899999874332222211 10000 011233477888765444 333 8888884311
Q ss_pred eeee----cc--------CCCce-EEEEecCCCEEEEEe----EEEecCC-CeEEEEEcCCCc-----------------
Q 000177 1674 VHRF----DQ--------FTDHG-GGGFHPAGNEVIINS----EVWDLRK-FRLLRSVPSLDQ----------------- 1718 (1922)
Q Consensus 1674 I~kf----~g--------h~~~V-sVaFSPdG~~LASGS----eIWDLrT-gklL~tl~gH~~----------------- 1718 (1922)
...| ++ ....| .+.|+++|++|++-. +|||++. ..++++++-|..
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 1111 11 12233 689999999999887 7999986 468889876654
Q ss_pred eeEEEccCCCEEEEEE
Q 000177 1719 TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs 1734 (1922)
-.+.||.+...+.+|+
T Consensus 341 FeisfSgd~~~v~sgs 356 (460)
T COG5170 341 FEISFSGDDKHVLSGS 356 (460)
T ss_pred EEEEecCCcccccccc
Confidence 3677888887777774
No 267
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.14 E-value=2.9e-05 Score=102.42 Aligned_cols=194 Identities=19% Similarity=0.279 Sum_probs=121.3
Q ss_pred EECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCC-----cceEec--c--ceeEEEcCCCC
Q 000177 1536 FDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGG-----PMHSFE--G--CKAARFSNSGN 1605 (1922)
Q Consensus 1536 WDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk-----~l~tf~--g--h~sVaFSPDG~ 1605 (1922)
|+. .|..+..+..|...|..++ .-++.+.+++|| +||+||+||.+...+. ...++. + ..++.+.+.++
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a-~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLA-VSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCc-cceEeehhhhcccccccee-ecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 665 5778888889999999883 344555899995 5999999999863332 112222 1 36688888999
Q ss_pred EEEEeecCCCCCeEEEEECCCCce--eeeeccccccccCCCCcceEEEEcCC-CC-eEeecc-----EEEEcCCCcceee
Q 000177 1606 LFAALPTETSDRGILLYDIQTYQL--EAKLSDTSVNLTGRGHAYSQIHFSPS-DT-MLLWNG-----ILWDRRNSVPVHR 1676 (1922)
Q Consensus 1606 ~LaSgS~~S~DgtIrIWDlrTgk~--i~tL~d~s~~~~~~gh~~~vVaFSPd-G~-lLaSgg-----rLWDlrtgk~I~k 1676 (1922)
.++.+ +.||.|++.++...+. .........+....|.....-+|... +. .++.+. ..||+++...+.+
T Consensus 1112 ~~Av~---t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1112 QFAVS---TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred eEEEE---cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 99998 8999999999986221 11111111111111211111222222 22 333222 8999998776555
Q ss_pred ecc--CCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC--CCc-eeEEEcc---CCCEEEEEE
Q 000177 1677 FDQ--FTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS--LDQ-TTITFNA---RGDVIYAIL 1734 (1922)
Q Consensus 1677 f~g--h~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g--H~~-~sVaFSP---dG~~LaSgs 1734 (1922)
++. ..+.+ +++.+|.+.++++|+ -+||+|=+.++..... +.. +.|..+| ...+++++.
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~ 1260 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAG 1260 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEec
Confidence 543 34455 999999999999999 3999997777776652 211 4555554 334555553
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.13 E-value=7.3e-06 Score=110.47 Aligned_cols=190 Identities=15% Similarity=0.276 Sum_probs=141.5
Q ss_pred cccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcE
Q 000177 1488 RRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1488 r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
...+-|.+.+..++.+++--....|+.+.|+..|+.+..+..||.+.+|.+. .++..++++|+...+.. .|-. .+
T Consensus 2230 gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df--~Fi~--s~ 2304 (2439)
T KOG1064|consen 2230 GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDF--RFIG--SL 2304 (2439)
T ss_pred ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccce--eeee--hh
Confidence 3455666788888888875333789999999999999999999999999986 67778889999999988 5644 56
Q ss_pred EEE-e---cCCcEEEeccCCCCC-CcceE--eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc
Q 000177 1568 LLS-S---SSQDVHLWNASSIAG-GPMHS--FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL 1640 (1922)
Q Consensus 1568 LaS-S---sDgtVkLWDl~t~~g-k~l~t--f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~ 1640 (1922)
+++ | .++.+.+||...... .++++ ..+.+++++.|..+.|++| +.+|.|++||++..+..++++
T Consensus 2305 ~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg---gr~G~v~l~D~rqrql~h~~~------ 2375 (2439)
T KOG1064|consen 2305 LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG---GRKGEVCLFDIRQRQLRHTFQ------ 2375 (2439)
T ss_pred hhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec---CCcCcEEEeehHHHHHHHHhh------
Confidence 666 2 377899999865222 22332 2345899999999999999 999999999999988887775
Q ss_pred cCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe--EEEe
Q 000177 1641 TGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--EVWD 1703 (1922)
Q Consensus 1641 ~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--eIWD 1703 (1922)
+++ ...++++++ +||++.....+++|......-+. |-..|..+-++- +||.
T Consensus 2376 ----------~~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf-Fr~~g~Q~~v~~~nrifs 2433 (2439)
T KOG1064|consen 2376 ----------ALD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF-FRNIGMQINVGQCNRIFS 2433 (2439)
T ss_pred ----------hhh-hhheeeccCcccceEEEEccccchhhcCchhhcccch-hhhcCceeeeccCceEEE
Confidence 133 456777666 99999998888888654422233 666665544432 5554
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=0.00052 Score=82.29 Aligned_cols=220 Identities=14% Similarity=0.172 Sum_probs=141.4
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCC--CCcee--eeccCCCCeeEEEeeecCCCcEEEEec--CCcE
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHT---KELKIFDSNS--SSPLE--SCTSHQAPVTLVQSHLSGETQLLLSSS--SQDV 1576 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~t--gk~l~--tL~gHss~VtsLq~afSpDG~lLaSSs--DgtV 1576 (1922)
.+. +.++-++|+|++++|.++..+ |.|--|.++. |.... ....-..+-..| +++++|++|++.. -+.|
T Consensus 37 ~~~-~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv--svd~~g~~vf~AnY~~g~v 113 (346)
T COG2706 37 AEL-GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV--SVDEDGRFVFVANYHSGSV 113 (346)
T ss_pred ccc-CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE--EECCCCCEEEEEEccCceE
Confidence 355 778999999999999998766 6777777764 44321 111112233667 7899999999863 7889
Q ss_pred EEeccCCCCCCcc---eEec------------c-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc
Q 000177 1577 HLWNASSIAGGPM---HSFE------------G-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL 1640 (1922)
Q Consensus 1577 kLWDl~t~~gk~l---~tf~------------g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~ 1640 (1922)
.++-++.. +.+. ..+. . .++..|.|++++++++..+ . -.|.+|++..|+....-. ...
T Consensus 114 ~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-~-Dri~~y~~~dg~L~~~~~--~~v- 187 (346)
T COG2706 114 SVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-T-DRIFLYDLDDGKLTPADP--AEV- 187 (346)
T ss_pred EEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-C-ceEEEEEcccCccccccc--ccc-
Confidence 99988652 3221 1111 1 2678899999999998442 3 458999999776543221 111
Q ss_pred cCCCCcceEEEEcCCCCeEeecc------EEEEcCCC--c--ceeee-------ccCCCceEEEEecCCCEEEEEeE---
Q 000177 1641 TGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNS--V--PVHRF-------DQFTDHGGGGFHPAGNEVIINSE--- 1700 (1922)
Q Consensus 1641 ~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtg--k--~I~kf-------~gh~~~VsVaFSPdG~~LASGSe--- 1700 (1922)
..|..-.-+.|+|++++..... .+|..... + .++++ .+....-.+..+|||++|..+.+
T Consensus 188 -~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d 266 (346)
T COG2706 188 -KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD 266 (346)
T ss_pred -CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence 1233333499999999877544 78887763 2 22222 22223337899999999999884
Q ss_pred -EE--ecC--CCe--EEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1701 -VW--DLR--KFR--LLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1701 -IW--DLr--Tgk--lL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
|| .+. +++ .+...+.+.+ ....|+|.|++|+++..
T Consensus 267 sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 267 SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 43 332 233 2223333333 79999999999999843
No 270
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.08 E-value=0.00022 Score=83.94 Aligned_cols=161 Identities=10% Similarity=0.190 Sum_probs=113.3
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc----eeEEEcCC-CC
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNS-GN 1605 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPD-G~ 1605 (1922)
..|.|||=....++.++. ...+|.+| .+.++ .|+.--.+.|.||.+.+ .-+.++.+... --++..|. ++
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V--~l~r~--riVvvl~~~I~VytF~~-n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAV--KLRRD--RIVVVLENKIYVYTFPD-NPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeE--EEcCC--eEEEEecCeEEEEEcCC-ChhheeeeecccCCCceEeecCCCCc
Confidence 469999966666666664 46889999 66544 77777888999999974 14455555432 12445553 33
Q ss_pred EEEEeecCCCCCeEEEEECCCCcee--eeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcceeee
Q 000177 1606 LFAALPTETSDRGILLYDIQTYQLE--AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRF 1677 (1922)
Q Consensus 1606 ~LaSgS~~S~DgtIrIWDlrTgk~i--~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf 1677 (1922)
.+++. .+-.-|.|.|-|+..-+.- ..+. .|...+.+++.+.+|.+++|++ +|||..+|..+..|
T Consensus 149 ~~Laf-Pg~k~GqvQi~dL~~~~~~~p~~I~-------AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 149 SLLAF-PGFKTGQVQIVDLASTKPNAPSIIN-------AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred eEEEc-CCCccceEEEEEhhhcCcCCceEEE-------cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee
Confidence 33332 3456699999999864431 2222 2344556699999999999998 99999999999999
Q ss_pred ccCCCc--e-EEEEecCCCEEEEEeE-----EEecC
Q 000177 1678 DQFTDH--G-GGGFHPAGNEVIINSE-----VWDLR 1705 (1922)
Q Consensus 1678 ~gh~~~--V-sVaFSPdG~~LASGSe-----IWDLr 1705 (1922)
....+. + +++||||+.+|+..|+ |+.++
T Consensus 221 RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 765443 3 9999999999999993 66655
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.01 E-value=3e-05 Score=90.16 Aligned_cols=184 Identities=20% Similarity=0.309 Sum_probs=122.5
Q ss_pred CEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCC------------------------------------------ceee
Q 000177 1511 LLTCITFLGDSS--HIAVGSHTKELKIFDSNSSS------------------------------------------PLES 1546 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~--lLASGS~DGtIkIWDl~tgk------------------------------------------~l~t 1546 (1922)
.|..+.|..++. .++..+.|.+|++|.+.... +.+.
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 467788876543 67777899999999874220 0112
Q ss_pred e-ccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCc-ceEecc---------ceeEEEcCC-CCEEEEeecCC
Q 000177 1547 C-TSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGP-MHSFEG---------CKAARFSNS-GNLFAALPTET 1614 (1922)
Q Consensus 1547 L-~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~-l~tf~g---------h~sVaFSPD-G~~LaSgS~~S 1614 (1922)
+ ..|..-|++| +|+.|...+++++|=.|.+|++....+.. +--++. +++..|||. ...|... +
T Consensus 167 yaNaH~yhiNSi--S~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS---s 241 (460)
T COG5170 167 YANAHPYHINSI--SFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS---S 241 (460)
T ss_pred ccccceeEeeee--eecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe---c
Confidence 2 5678888999 88999999999999999999997632211 111111 378899995 4455554 6
Q ss_pred CCCeEEEEECCCCcee----eeec---cccccccCCC--CcceEEEEcCCCCeEeecc----EEEEcCCC-cceeeeccC
Q 000177 1615 SDRGILLYDIQTYQLE----AKLS---DTSVNLTGRG--HAYSQIHFSPSDTMLLWNG----ILWDRRNS-VPVHRFDQF 1680 (1922)
Q Consensus 1615 ~DgtIrIWDlrTgk~i----~tL~---d~s~~~~~~g--h~~~vVaFSPdG~lLaSgg----rLWDlrtg-k~I~kf~gh 1680 (1922)
..|.|++-|++..... ..+. ++.......+ ..+..+.|+++|+++++-. +|||++.. .|+.++.-|
T Consensus 242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechH
Confidence 7799999999943221 1111 0100000001 1122399999999999888 99999975 478877544
Q ss_pred C------------Cce----EEEEecCCCEEEEEe
Q 000177 1681 T------------DHG----GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1681 ~------------~~V----sVaFSPdG~~LASGS 1699 (1922)
. ..| -+.|+-+.+.+++|+
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs 356 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS 356 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence 2 233 578999999999998
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00016 Score=90.59 Aligned_cols=133 Identities=14% Similarity=0.228 Sum_probs=108.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc--
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG-- 1594 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g-- 1594 (1922)
|...|+-|...|.|.+|++..|+....+ .+|.+.|+++ .++.+-..|.+ +.|..+.+|+... .+.++.+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~--~~~~~~~ciyS~~ad~~v~~~~~~~--~~~~~~~~~~~ 144 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEI--LDAQRLGCIYSVGADLKVVYILEKE--KVIIRIWKEQK 144 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceee--ecccccCceEecCCceeEEEEeccc--ceeeeeeccCC
Confidence 4558899999999999999999988887 4799999999 66777777777 5699999999987 666777765
Q ss_pred --ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCC-----CCeEeecc--
Q 000177 1595 --CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPS-----DTMLLWNG-- 1663 (1922)
Q Consensus 1595 --h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPd-----G~lLaSgg-- 1663 (1922)
..+++.+|||..++++ + ++|++||+.+++.+.+|+ ||...+ +.|... |.+++++.
T Consensus 145 ~~~~sl~is~D~~~l~~a---s--~~ik~~~~~~kevv~~ft---------gh~s~v~t~~f~~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTA---S--RQIKVLDIETKEVVITFT---------GHGSPVRTLSFTTLIDGIIGKYVLSSAAA 210 (541)
T ss_pred CccceEEEcCCCCEEEec---c--ceEEEEEccCceEEEEec---------CCCcceEEEEEEEeccccccceeeecccc
Confidence 3789999999999988 3 679999999999999997 565554 777766 78888665
Q ss_pred ----EEEEcCC
Q 000177 1664 ----ILWDRRN 1670 (1922)
Q Consensus 1664 ----rLWDlrt 1670 (1922)
.+|-+..
T Consensus 211 ~r~i~~w~v~~ 221 (541)
T KOG4547|consen 211 ERGITVWVVEK 221 (541)
T ss_pred ccceeEEEEEc
Confidence 5666553
No 273
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.96 E-value=1.9e-05 Score=65.59 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=36.3
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFD 1537 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWD 1537 (1922)
+++++|++|. +.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~-~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHS-SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSS-SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC-CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5688999999 9999999999999999999999999997
No 274
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=1.6e-05 Score=93.65 Aligned_cols=118 Identities=16% Similarity=0.224 Sum_probs=92.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----CceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSS-----SPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASS 1583 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg-----k~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t 1583 (1922)
+.|.++.|...+++++.|...|.|..+|+..+ .+... --|.+.|++++. ..-++++|++| -+|+|+|||.+-
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~-Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQI-LQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhhh-hccccceEeeccCcCceeEeeehh
Confidence 66889999999999999999999999999765 23333 348999999962 33256677665 599999999986
Q ss_pred CCCCc---ceEeccc-ee-----EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1584 IAGGP---MHSFEGC-KA-----ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1584 ~~gk~---l~tf~gh-~s-----VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
.++ ++++.|| +. +..++....++++ +.|...+||.++.|..+.+++
T Consensus 331 --~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~---GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 331 --TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV---GDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred --hhcccceeeeecccccccccccccccccceEEEc---cCeeEEEEEecccCceeeccC
Confidence 555 8889997 22 3344556677777 899999999999999998886
No 275
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.92 E-value=0.0017 Score=88.74 Aligned_cols=175 Identities=13% Similarity=0.147 Sum_probs=108.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-------------C----------CCceeeecc----------------
Q 000177 1509 GALLTCITFLGDSSHIAVGSHTKELKIFDSN-------------S----------SSPLESCTS---------------- 1549 (1922)
Q Consensus 1509 d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~-------------t----------gk~l~tL~g---------------- 1549 (1922)
+++|.|++||||+..|+..+.+++|.+-+-+ - |+....|.|
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 4789999999999999999999998775321 0 111111211
Q ss_pred --------CCCCeeEEEeeecCCCcEEEEec----C---CcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEe
Q 000177 1550 --------HQAPVTLVQSHLSGETQLLLSSS----S---QDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAAL 1610 (1922)
Q Consensus 1550 --------Hss~VtsLq~afSpDG~lLaSSs----D---gtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSg 1610 (1922)
+...-..| +|-.||+|++.+. . ..++||+-+ |....+-+. ..+++|.|.|++|++.
T Consensus 200 ~~d~~~~s~dd~~~~I--SWRGDG~yFAVss~~~~~~~~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPsG~lIA~~ 274 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRI--SWRGDGEYFAVSSVEPETGSRRVIRVYSRE---GELQSTSEPVDGLEGALSWRPSGNLIASS 274 (928)
T ss_pred ccccCccccCCCceEE--EECCCCcEEEEEEEEcCCCceeEEEEECCC---ceEEeccccCCCccCCccCCCCCCEEEEE
Confidence 22233455 7899999999852 2 469999976 443222222 2679999999999998
Q ss_pred ecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCCc----ceeeeccCCC
Q 000177 1611 PTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSV----PVHRFDQFTD 1682 (1922)
Q Consensus 1611 S~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk----~I~kf~gh~~ 1682 (1922)
........|.+|.- +|-.-..|.-+. ...+..+..+.|++++..|+..- .+|-..+.. ..-.|.....
T Consensus 275 q~~~~~~~VvFfEr-NGLrhgeF~l~~---~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~ 350 (928)
T PF04762_consen 275 QRLPDRHDVVFFER-NGLRHGEFTLRF---DPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSES 350 (928)
T ss_pred EEcCCCcEEEEEec-CCcEeeeEecCC---CCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCC
Confidence 54334455666653 344433343110 01233445599999999998543 899877653 1122322223
Q ss_pred ceEEEEecCC
Q 000177 1683 HGGGGFHPAG 1692 (1922)
Q Consensus 1683 ~VsVaFSPdG 1692 (1922)
...+.|||..
T Consensus 351 ~~~~~Wdpe~ 360 (928)
T PF04762_consen 351 VNFVKWDPEK 360 (928)
T ss_pred CCceEECCCC
Confidence 3368999854
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.92 E-value=0.001 Score=81.37 Aligned_cols=277 Identities=11% Similarity=0.088 Sum_probs=162.6
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTK-ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASS 1583 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DG-tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t 1583 (1922)
+|. +.|.-..+..+++-++.|..|| .+-|||..+++. +.+...-+.|..+ ..+++|++++.+. ...+.+.|+.+
T Consensus 357 ~~~-~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av--~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 357 GKK-GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAV--KVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCC-CceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEE--EEcCCCcEEEEEcCceEEEEEEecC
Confidence 677 7899999999999999999999 899999987764 4555566789999 8899999888876 55799999988
Q ss_pred CCCCcceE----eccceeEEEcCCCCEEEEeecCC-CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1584 IAGGPMHS----FEGCKAARFSNSGNLFAALPTET-SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1584 ~~gk~l~t----f~gh~sVaFSPDG~~LaSgS~~S-~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
+.+... ..-++...|||++++|+.+-.++ .-..|++||+.+++....-+ .......-+|.|++++
T Consensus 433 --gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--------~ta~DfsPaFD~d~ry 502 (668)
T COG4946 433 --GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--------PTAYDFSPAFDPDGRY 502 (668)
T ss_pred --CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--------CcccccCcccCCCCcE
Confidence 443211 11258899999999999873221 23569999999888765443 1122233789999998
Q ss_pred Eeecc-EEEEcCCCcceeee--ccCCCceEE-----EEecCCCEEEEEe---EEEecCCC-eEEEEEcCCCc--eeEEEc
Q 000177 1659 LLWNG-ILWDRRNSVPVHRF--DQFTDHGGG-----GFHPAGNEVIINS---EVWDLRKF-RLLRSVPSLDQ--TTITFN 1724 (1922)
Q Consensus 1659 LaSgg-rLWDlrtgk~I~kf--~gh~~~VsV-----aFSPdG~~LASGS---eIWDLrTg-klL~tl~gH~~--~sVaFS 1724 (1922)
|.--+ +-.|..+.+.+..| ..+..+.-+ ..||-.+..=... .-+|++.- ..+.-++-... .+++=-
T Consensus 503 LYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~l 582 (668)
T COG4946 503 LYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGL 582 (668)
T ss_pred EEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeec
Confidence 87555 44444444433322 333332211 1222221111000 12333211 11111221111 344444
Q ss_pred cCCCEEEEEEccCc--hhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCcc
Q 000177 1725 ARGDVIYAILRRNL--EDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMF 1802 (1922)
Q Consensus 1725 PdG~~LaSgs~~d~--~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~d 1802 (1922)
.+|+++.-...-.+ ..+.| ....+..+...+.+.-.....+.++.++..|++++++-+.. +
T Consensus 583 k~~killfs~pi~Gefs~yy~----------gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilvk~-------d 645 (668)
T COG4946 583 KNGKILLFSYPIHGEFSQYYW----------GQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILVKL-------D 645 (668)
T ss_pred CCCeEEEEEeeccchhhhhhc----------CCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEEEe-------C
Confidence 45544443322111 11111 01122223333333333344567899999999999988752 3
Q ss_pred ceEEEEEecCC
Q 000177 1803 SSARIYEIGRR 1813 (1922)
Q Consensus 1803 SsVRLyEVGr~ 1813 (1922)
..++++++.++
T Consensus 646 ~kl~~f~vekk 656 (668)
T COG4946 646 GKLRLFDVEKK 656 (668)
T ss_pred CeEEEEecccC
Confidence 56888887654
No 277
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.87 E-value=7.6e-05 Score=97.82 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=103.7
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcce-Ee
Q 000177 1515 ITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMH-SF 1592 (1922)
Q Consensus 1515 LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~-tf 1592 (1922)
+-++++.-++++|+.-+.|.+|+....+.-..+.||.+.|.++ .|+.||+++++ |.|.++++|++.+ .+... +.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i--~~s~dg~~i~s~SdDRsiRlW~i~s--~~~~~~~~ 214 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSI--VTSLDGRYIASVSDDRSIRLWPIDS--REVLGCTG 214 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEE--EEccCCcEEEEEecCcceeeeeccc--ccccCccc
Confidence 3456667799999999999999987433333689999999999 88999999999 6799999999998 43332 22
Q ss_pred ccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----
Q 000177 1593 EGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----- 1663 (1922)
Q Consensus 1593 ~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----- 1663 (1922)
=+| +.+.|+|+ +++++ +.|.+.++|+... ..+..+. ...+..++.+...+....++|++
T Consensus 215 fgHsaRvw~~~~~~n--~i~t~---gedctcrvW~~~~-~~l~~y~------~h~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 215 FGHSARVWACCFLPN--RIITV---GEDCTCRVWGVNG-TQLEVYD------EHSGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred ccccceeEEEEeccc--eeEEe---ccceEEEEEeccc-ceehhhh------hhhhcceeEEEEcCCceEEEeeccCcch
Confidence 233 77889988 88998 8999999997653 3333443 11233345588888888888777
Q ss_pred EEEEcC
Q 000177 1664 ILWDRR 1669 (1922)
Q Consensus 1664 rLWDlr 1669 (1922)
++||+.
T Consensus 283 k~~~l~ 288 (967)
T KOG0974|consen 283 KLWDLN 288 (967)
T ss_pred hhhhhh
Confidence 777765
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.86 E-value=0.0011 Score=80.86 Aligned_cols=205 Identities=12% Similarity=0.121 Sum_probs=131.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc------CC-----CCeeEEEeeecC-CCcEEEEecCCcEEEecc
Q 000177 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS------HQ-----APVTLVQSHLSG-ETQLLLSSSSQDVHLWNA 1581 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g------Hs-----s~VtsLq~afSp-DG~lLaSSsDgtVkLWDl 1581 (1922)
+=..+.||+.|+- +.-|.|.+||..+.+...--.+ .. .++.-+. .|++ +|.+++.-+-|...|.+.
T Consensus 271 ~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyle-dfa~~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 271 PRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLE-DFAVVNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred ccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhh-hhccCCCcEEEEEecCcEEEECC
Confidence 3344568887654 4568899999876554321111 01 1111111 1222 678888878888877776
Q ss_pred CCCCCCcc--eEeccceeEEEcCCCCEEEEeecCCCCC-eEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1582 SSIAGGPM--HSFEGCKAARFSNSGNLFAALPTETSDR-GILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1582 ~t~~gk~l--~tf~gh~sVaFSPDG~~LaSgS~~S~Dg-tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
.. +-.+ ..-.+++...+.-+++-++.| ..|| .+-|||.++++...... .-..+..+..+|+|+.
T Consensus 349 ~~--~~~iqv~~~~~VrY~r~~~~~e~~vig---t~dgD~l~iyd~~~~e~kr~e~--------~lg~I~av~vs~dGK~ 415 (668)
T COG4946 349 WD--GYSIQVGKKGGVRYRRIQVDPEGDVIG---TNDGDKLGIYDKDGGEVKRIEK--------DLGNIEAVKVSPDGKK 415 (668)
T ss_pred CC--CeeEEcCCCCceEEEEEccCCcceEEe---ccCCceEEEEecCCceEEEeeC--------CccceEEEEEcCCCcE
Confidence 54 2222 222246777777777778887 6777 89999999887655433 0122344999999997
Q ss_pred Eeecc-----EEEEcCCCcceeeeccC-CCce-EEEEecCCCEEEEEe---------EEEecCCCeEEEEEcCCC-ceeE
Q 000177 1659 LLWNG-----ILWDRRNSVPVHRFDQF-TDHG-GGGFHPAGNEVIINS---------EVWDLRKFRLLRSVPSLD-QTTI 1721 (1922)
Q Consensus 1659 LaSgg-----rLWDlrtgk~I~kf~gh-~~~V-sVaFSPdG~~LASGS---------eIWDLrTgklL~tl~gH~-~~sV 1721 (1922)
++.+. .+.|+.+|++. .++.. .+-| ...|||+++++|-+- +++|+.+++....-.... ..+-
T Consensus 416 ~vvaNdr~el~vididngnv~-~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsP 494 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSP 494 (668)
T ss_pred EEEEcCceEEEEEEecCCCee-EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCc
Confidence 77665 56677888653 33333 3334 899999999999876 599999887665433221 2688
Q ss_pred EEccCCCEEEEEE
Q 000177 1722 TFNARGDVIYAIL 1734 (1922)
Q Consensus 1722 aFSPdG~~LaSgs 1734 (1922)
+|.|+|++|+--+
T Consensus 495 aFD~d~ryLYfLs 507 (668)
T COG4946 495 AFDPDGRYLYFLS 507 (668)
T ss_pred ccCCCCcEEEEEe
Confidence 9999999999654
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.85 E-value=0.004 Score=86.56 Aligned_cols=210 Identities=13% Similarity=0.138 Sum_probs=125.4
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeecc--C------------CCCeeEEEeeecCCCcEEEEe--cCCcE
Q 000177 1514 CITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTS--H------------QAPVTLVQSHLSGETQLLLSS--SSQDV 1576 (1922)
Q Consensus 1514 ~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~g--H------------ss~VtsLq~afSpDG~lLaSS--sDgtV 1576 (1922)
.+++++ ++.+.++-+..+.|++||.. ++.+..+.+ . -..-..| ++++++..|..+ ..+.|
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GI--avd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGL--AYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEE--EEeCCCCEEEEEeCCCceE
Confidence 567776 45677777788889999974 444443322 1 1123667 778877754443 46789
Q ss_pred EEeccCCCCCCcceEe---------------------ccceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1577 HLWNASSIAGGPMHSF---------------------EGCKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf---------------------~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
+++|+.+ + .+.++ ..-+.++|+| ++..+++. ..++.|++||..++... .+.
T Consensus 649 r~id~~~--~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad---~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 649 REIDFVN--E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM---AGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred EEEecCC--C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE---CCCCeEEEEECCCCeEE-EEe
Confidence 9999865 2 23322 1226799999 45566665 67889999999877543 221
Q ss_pred -cccc-cccCC-----C-CcceEEEEcCCCC-eEeecc-----EEEEcCCCccee-------------eec---c-----
Q 000177 1635 -DTSV-NLTGR-----G-HAYSQIHFSPSDT-MLLWNG-----ILWDRRNSVPVH-------------RFD---Q----- 1679 (1922)
Q Consensus 1635 -d~s~-~~~~~-----g-h~~~vVaFSPdG~-lLaSgg-----rLWDlrtgk~I~-------------kf~---g----- 1679 (1922)
+... ...+. . ....-++|+|+|+ ++++.. ++||+.++.... .|- +
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 0000 00000 0 1112289999998 444444 889988764211 110 0
Q ss_pred -CCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEc-C---C-----------CceeEEEccCCCEEEEE
Q 000177 1680 -FTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP-S---L-----------DQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1680 -h~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~-g---H-----------~~~sVaFSPdG~~LaSg 1733 (1922)
...+.+++|+++|+.+++.+ ++||..++.+..... + . ....|+++++|+++++-
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 11233789999998777665 589998776553321 1 0 11689999999865554
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.84 E-value=0.0012 Score=91.62 Aligned_cols=189 Identities=11% Similarity=0.110 Sum_probs=119.3
Q ss_pred EEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceeeecc--C---------------CCCeeEEEeeecC-CCcEEEE-e
Q 000177 1512 LTCITFLGDSSHIAVGS-HTKELKIFDSNSSSPLESCTS--H---------------QAPVTLVQSHLSG-ETQLLLS-S 1571 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS-~DGtIkIWDl~tgk~l~tL~g--H---------------ss~VtsLq~afSp-DG~lLaS-S 1571 (1922)
...++|+++++.|+++. ..+.|+++|+.++. +.++.+ . -..-+.| +++| ++.++++ +
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gV--a~dp~~g~LyVad~ 702 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDV--CFEPVNEKVYIAMA 702 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEE--EEecCCCeEEEEEC
Confidence 46899999888666655 45789999987654 333321 0 0122467 7888 5666666 4
Q ss_pred cCCcEEEeccCCCCCCcceE-------------------eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1572 SSQDVHLWNASSIAGGPMHS-------------------FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~t-------------------f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
.++.|++||..+ +. +.. +...+.++|+|++++|+.+ ++.++.|++||+.++.....
T Consensus 703 ~~~~I~v~d~~~--g~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVA--Ds~n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 703 GQHQIWEYNISD--GV-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIA--DSESSSIRALDLKTGGSRLL 777 (1057)
T ss_pred CCCeEEEEECCC--Ce-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEE--ECCCCeEEEEECCCCcEEEE
Confidence 588999999865 22 111 1223569999999866555 36779999999987653211
Q ss_pred ec-cc----cccccC----------CCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeec-c------------
Q 000177 1633 LS-DT----SVNLTG----------RGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD-Q------------ 1679 (1922)
Q Consensus 1633 L~-d~----s~~~~~----------~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~-g------------ 1679 (1922)
.. ++ .....+ ..++ ..++|+++|.++++.. ++||..++....... +
T Consensus 778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P-~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a 856 (1057)
T PLN02919 778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHP-LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKA 856 (1057)
T ss_pred EecccccCcccccccCCCCchhhhhccCC-ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccc
Confidence 10 00 000000 0111 2389999999888765 899988775442221 0
Q ss_pred -CCCceEEEEecCCCEEEEEe-----EEEecCCCeE
Q 000177 1680 -FTDHGGGGFHPAGNEVIINS-----EVWDLRKFRL 1709 (1922)
Q Consensus 1680 -h~~~VsVaFSPdG~~LASGS-----eIWDLrTgkl 1709 (1922)
...+..++++++|+.+++.+ ++||+.+++.
T Consensus 857 ~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 857 QLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 11233789999999777766 5999998765
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.0002 Score=90.08 Aligned_cols=222 Identities=11% Similarity=0.097 Sum_probs=140.5
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
...-++|.||. +.|.-+.|+.+.+.|-|...+|.|.||-+-+|.....+ .-..+-|.++ +|+.||+.|+.- .||
T Consensus 61 LsmNQtLeGH~-~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~Sm--sWn~dG~kIcIvYeDG 137 (1189)
T KOG2041|consen 61 LSMNQTLEGHN-ASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSM--SWNLDGTKICIVYEDG 137 (1189)
T ss_pred cchhhhhccCc-ceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEE--EEcCCCcEEEEEEccC
Confidence 34457899999 99999999999999999999999999999888765544 3345678888 788898877664 588
Q ss_pred cEEEeccCCCCCCcc--eEeccc--eeEEEcCCCCEEEEeecCCCCCeEEEEECCCC-------ceeeeeccccccccCC
Q 000177 1575 DVHLWNASSIAGGPM--HSFEGC--KAARFSNSGNLFAALPTETSDRGILLYDIQTY-------QLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l--~tf~gh--~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg-------k~i~tL~d~s~~~~~~ 1643 (1922)
.|.+=.+.. ..+ ..+++. ..+.|++|.+.++.+ -..|.+++||.+.. .+..+.+.. ....
T Consensus 138 avIVGsvdG---NRIwgKeLkg~~l~hv~ws~D~~~~Lf~---~ange~hlydnqgnF~~Kl~~~c~Vn~tg~---~s~~ 208 (1189)
T KOG2041|consen 138 AVIVGSVDG---NRIWGKELKGQLLAHVLWSEDLEQALFK---KANGETHLYDNQGNFERKLEKDCEVNGTGI---FSNF 208 (1189)
T ss_pred CEEEEeecc---ceecchhcchheccceeecccHHHHHhh---hcCCcEEEecccccHHHhhhhceEEeeeee---ecCC
Confidence 776655542 222 123332 568999999888877 67789999998632 121111111 1112
Q ss_pred CCcceEEEEc--------CCCCeEeecc---E--EE-EcCCCcceeeeccCCCceEEEEecCCCEEEEEeE---------
Q 000177 1644 GHAYSQIHFS--------PSDTMLLWNG---I--LW-DRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE--------- 1700 (1922)
Q Consensus 1644 gh~~~vVaFS--------PdG~lLaSgg---r--LW-Dlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe--------- 1700 (1922)
+|....+.|. |+...++.+- + |- ......|+ .++.....+...|+|+|..|++++.
T Consensus 209 ~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv-v~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d 287 (1189)
T KOG2041|consen 209 PTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV-VVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTD 287 (1189)
T ss_pred CccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe-EEecccEeecceecCCCcEEEEccCcccccCccc
Confidence 3444444443 4555555432 1 11 11122232 2333333447899999999999981
Q ss_pred -----EEecCCCeEEEEEc--CCCceeEEEccCCCEEEEE
Q 000177 1701 -----VWDLRKFRLLRSVP--SLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1701 -----IWDLrTgklL~tl~--gH~~~sVaFSPdG~~LaSg 1733 (1922)
++.. -|+.+.+++ +...+.++|-..|-.|+.+
T Consensus 288 ~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 288 SNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred cceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 2221 256666665 3333788888777665543
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.76 E-value=6.5e-05 Score=94.75 Aligned_cols=169 Identities=18% Similarity=0.264 Sum_probs=118.1
Q ss_pred EEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC-ceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEe
Q 000177 1502 RTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSS-PLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLW 1579 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk-~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLW 1579 (1922)
..+.||. ..|+.+.|+| ....|++++.|..|..||+.+.. ++..+......-..|+|.+ .++..++++..+.|.+|
T Consensus 108 f~lhghs-raitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny-k~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 108 FVLHGHS-RAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY-KDPNVLASSHGNDIFVW 185 (1081)
T ss_pred EEEecCc-cceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc-cCcchhhhccCCceEEE
Confidence 3567899 9999999998 45589999999999999998653 5566655566677885533 36677777878889999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCce--eeeeccccccccCCCCcceEEEE
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQL--EAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~--i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
|.+.+ +.++.++++| +.++|..- -..+.++ +.|++|+.||-..... ..+++ ....++...|
T Consensus 186 d~r~g-s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~---~~d~tvkfw~y~kSt~e~~~~vt--------t~~piw~~r~ 253 (1081)
T KOG0309|consen 186 DLRKG-STPLCSLKGHVSSVNSIDFNRFKYSEIMSS---SNDGTVKFWDYSKSTTESKRTVT--------TNFPIWRGRY 253 (1081)
T ss_pred eccCC-CcceEEecccceeeehHHHhhhhhhhhccc---CCCCceeeecccccccccceecc--------ccCcceeccc
Confidence 99873 6788888886 44556542 2346666 8899999999874332 22222 2344444555
Q ss_pred cCCCCeEe----ecc------------EEEEcCCC-cceeeeccCCCce
Q 000177 1653 SPSDTMLL----WNG------------ILWDRRNS-VPVHRFDQFTDHG 1684 (1922)
Q Consensus 1653 SPdG~lLa----Sgg------------rLWDlrtg-k~I~kf~gh~~~V 1684 (1922)
.|-|+-.. .|+ ..|++.++ ++|++|.||.+.|
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V 302 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV 302 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence 55443211 111 67777765 6899999999866
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.72 E-value=0.0089 Score=69.38 Aligned_cols=204 Identities=14% Similarity=0.115 Sum_probs=121.5
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeec-CCCcEEEEecCCcEEEeccCCCCCCcceE
Q 000177 1514 CITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLS-GETQLLLSSSSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1514 ~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afS-pDG~lLaSSsDgtVkLWDl~t~~gk~l~t 1591 (1922)
+..|.+ ++.++++--..+.|..|+..+++... +.... ...+ .+. +++.++++...+ +.++|..+..-+.+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~--~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGM--AFDRPDGRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEE--EEECTTSEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceE--EEEccCCEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 577888 77777887789999999998775533 32222 5555 455 777777776544 4555887621122233
Q ss_pred ec-------cceeEEEcCCCCEEEEeecCCC---C--CeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1592 FE-------GCKAARFSNSGNLFAALPTETS---D--RGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1592 f~-------gh~sVaFSPDG~~LaSgS~~S~---D--gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
.. ..+.+++.|+|+++++...... . +.|..++.. ++...... .-+..+-++|+|+++.|
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--------~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--------GLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--------EESSEEEEEEETTSSEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--------CcccccceEECCcchhe
Confidence 21 1378999999997777632211 1 557777777 45433332 11233459999999876
Q ss_pred e-ecc---EEE--EcCC-Cc-c--eeee---ccCCCce-EEEEecCCCEEEEEe---E--EEecCCCeEEEEEcCC--Cc
Q 000177 1660 L-WNG---ILW--DRRN-SV-P--VHRF---DQFTDHG-GGGFHPAGNEVIINS---E--VWDLRKFRLLRSVPSL--DQ 1718 (1922)
Q Consensus 1660 a-Sgg---rLW--Dlrt-gk-~--I~kf---~gh~~~V-sVaFSPdG~~LASGS---e--IWDLrTgklL~tl~gH--~~ 1718 (1922)
+ +.+ +|| ++.. +. . ...| ....... .+++..+|+..++.. + ++|.. |+++..+.-. ..
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~ 227 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRP 227 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSE
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCE
Confidence 5 444 444 4432 22 1 1223 2222223 899999998776633 3 56665 8888877643 23
Q ss_pred eeEEE-ccCCCEEEEE
Q 000177 1719 TTITF-NARGDVIYAI 1733 (1922)
Q Consensus 1719 ~sVaF-SPdG~~LaSg 1733 (1922)
++++| .++.+.|+..
T Consensus 228 t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 228 TNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEESTTSSEEEEE
T ss_pred EEEEEECCCCCEEEEE
Confidence 89999 4777777765
No 284
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00014 Score=84.79 Aligned_cols=125 Identities=13% Similarity=0.164 Sum_probs=93.1
Q ss_pred CceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCCceee-eccCCCCeeEEEeeecCCCcEEEEec-
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSN-SSSPLES-CTSHQAPVTLVQSHLSGETQLLLSSS- 1572 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~-tgk~l~t-L~gHss~VtsLq~afSpDG~lLaSSs- 1572 (1922)
.....++.++|. -+.|.++|+. +.+++++|+.|+.+.-||+. .++.+.. .+-|+..|.+|. +-.|.+.+|+||+
T Consensus 154 ~le~vq~wk~He-~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~-ss~~~~~~I~TGsY 231 (339)
T KOG0280|consen 154 VLEKVQTWKVHE-FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY-SSPPKPTYIATGSY 231 (339)
T ss_pred eeeecccccccc-eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe-cCCCCCceEEEecc
Confidence 345566788999 9999999997 56799999999999999998 4455444 467999999995 3445688999976
Q ss_pred CCcEEEeccCCCCCCcceEe---ccceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1573 SQDVHLWNASSIAGGPMHSF---EGCKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf---~gh~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
|-.|++||.+.. ++++..- -|++.+.++|. ++.++++ ..+-.+|-++..+.
T Consensus 232 De~i~~~DtRnm-~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C----Mh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 232 DECIRVLDTRNM-GKPLFKAKVGGGVWRIKHHPEIFHRLLAAC----MHNGAKILDSSDKV 287 (339)
T ss_pred ccceeeeehhcc-cCccccCccccceEEEEecchhhhHHHHHH----HhcCceEEEecccc
Confidence 999999999963 6666433 35799999994 3444544 22336777776543
No 285
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.65 E-value=0.0053 Score=75.53 Aligned_cols=255 Identities=13% Similarity=0.156 Sum_probs=140.5
Q ss_pred cCCCCEEEEE---------eCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCc
Q 000177 1518 LGDSSHIAVG---------SHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1518 SPDG~lLASG---------S~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~ 1588 (1922)
|||+++++.. +..+.+.|||+.+++....... ...+... .|||+|+.++...++.|.+++..+ +..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~--~~sP~g~~~~~v~~~nly~~~~~~--~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDA--KWSPDGKYIAFVRDNNLYLRDLAT--GQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEE--EE-SSSTEEEEEETTEEEEESSTT--SEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccc--eeecCCCeeEEEecCceEEEECCC--CCe
Confidence 5778777663 2346789999988765443333 5567777 789999999999999999999865 221
Q ss_pred c-eEecc--------------------ceeEEEcCCCCEEEEeecCC-------------------------------CC
Q 000177 1589 M-HSFEG--------------------CKAARFSNSGNLFAALPTET-------------------------------SD 1616 (1922)
Q Consensus 1589 l-~tf~g--------------------h~sVaFSPDG~~LaSgS~~S-------------------------------~D 1616 (1922)
. .+..| ...+-|||||++|+....+. ..
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 1 11111 25688999999998763321 00
Q ss_pred C--eEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-eEeec-c--------EEEEcCCCcceeee-ccCCCc
Q 000177 1617 R--GILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT-MLLWN-G--------ILWDRRNSVPVHRF-DQFTDH 1683 (1922)
Q Consensus 1617 g--tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~-lLaSg-g--------rLWDlrtgk~I~kf-~gh~~~ 1683 (1922)
- .+.|+|+.+++... +..+. ......+-...+.|.++++ +++.- . .++|..++++-..+ .....+
T Consensus 156 p~v~l~v~~~~~~~~~~-~~~~~-~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W 233 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTE-LDPPN-SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW 233 (353)
T ss_dssp -EEEEEEEESSSTCCCE-E---H-HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred CceEEEEEECCCCcEEE-eeecc-ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence 1 23344554444321 11000 0001233344499999998 43321 1 67888877643222 223334
Q ss_pred e----EEEEe-cCCCEEEEEeE--------EEecCCCeEEEEEc-CCCc--eeEEEccCCCEEEEEEccCchhhhhhhcc
Q 000177 1684 G----GGGFH-PAGNEVIINSE--------VWDLRKFRLLRSVP-SLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHT 1747 (1922)
Q Consensus 1684 V----sVaFS-PdG~~LASGSe--------IWDLrTgklL~tl~-gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~ 1747 (1922)
+ ...|. +++..++-.++ +.+..++. .+.+. |.-. .-+.|++++..|+-.....
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~---------- 302 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGD---------- 302 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSG----------
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCC----------
Confidence 3 56665 88877776662 44554444 33333 2211 3578899888777543221
Q ss_pred cccccCCcceEEEEecCCCceeeeeccCCce-EEEEEcCCCceEEEEe
Q 000177 1748 RRVKHPLFAAFRTVDAINYSDIATIPVDRCV-LDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1748 rr~ksp~~ssFrt~Da~dys~IaTidvkr~I-~dLa~SPdds~LAVVe 1794 (1922)
.|....+..++......+..+...... ..+.+||++++++...
T Consensus 303 ----~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 303 ----NPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp ----GTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred ----CCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 234455555555422233333333333 5999999999988654
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.60 E-value=0.012 Score=80.89 Aligned_cols=269 Identities=15% Similarity=0.189 Sum_probs=144.5
Q ss_pred CCEEEEEEcCCCCE--EEEEeCCC--cEEEEECCCCC---ceeeec-----cCCCCeeEEEeeecCCCc-EEEEecCCcE
Q 000177 1510 ALLTCITFLGDSSH--IAVGSHTK--ELKIFDSNSSS---PLESCT-----SHQAPVTLVQSHLSGETQ-LLLSSSSQDV 1576 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~l--LASGS~DG--tIkIWDl~tgk---~l~tL~-----gHss~VtsLq~afSpDG~-lLaSSsDgtV 1576 (1922)
..+...+|.+.... ++++.... .|.+....... .+..+. .....|.++ .|-++.. +++...+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~--~yl~d~~~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSF--QYLADSESLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEE--EeccCCCcEEEEECCceE
Confidence 35677777775543 34443333 33444333222 233332 234678888 5555554 5555679999
Q ss_pred EEe----ccCCCCCCcceEec-cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE-E
Q 000177 1577 HLW----NASSIAGGPMHSFE-GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ-I 1650 (1922)
Q Consensus 1577 kLW----Dl~t~~gk~l~tf~-gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v-V 1650 (1922)
.+. +......+.+..+. |+.+++||||+..++.. +.++++.+.+ ++...+...+ +.....+....+ +
T Consensus 100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~v---T~~~~l~~mt-~~fd~i~E~~---l~~~~~~~~~~VsV 172 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALV---TGEGNLLLMT-RDFDPISEVP---LDSDDFGESKHVSV 172 (928)
T ss_pred EEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEE---eCCCEEEEEe-ccceEEEEee---cCccccCCCceeee
Confidence 988 66543234455554 57999999999999888 6677777664 4444444332 111111111111 3
Q ss_pred EEcCCCCeEe-eccE-----EEEcCCC-cceeeeccCCCceEEEEecCCCEEEEEe-----------EEEecCCCeEEEE
Q 000177 1651 HFSPSDTMLL-WNGI-----LWDRRNS-VPVHRFDQFTDHGGGGFHPAGNEVIINS-----------EVWDLRKFRLLRS 1712 (1922)
Q Consensus 1651 aFSPdG~lLa-Sggr-----LWDlrtg-k~I~kf~gh~~~VsVaFSPdG~~LASGS-----------eIWDLrTgklL~t 1712 (1922)
-|-.....+= +.|+ +=|.... .....+....+.+.++|-.||.|+|+++ +||+-. |.+..+
T Consensus 173 GWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st 251 (928)
T PF04762_consen 173 GWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST 251 (928)
T ss_pred ccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec
Confidence 3332221111 1111 1111111 0011122122445899999999999988 388865 665544
Q ss_pred EcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCce-eeee---ccCCceEEEEEcCC
Q 000177 1713 VPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSD-IATI---PVDRCVLDFATERT 1786 (1922)
Q Consensus 1713 l~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~-IaTi---dvkr~I~dLa~SPd 1786 (1922)
-..-+. .+++|-|.|.+|++..+... ...+.+|+...... -.++ .....|..+.|+++
T Consensus 252 SE~v~gLe~~l~WrPsG~lIA~~q~~~~----------------~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~d 315 (928)
T PF04762_consen 252 SEPVDGLEGALSWRPSGNLIASSQRLPD----------------RHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSD 315 (928)
T ss_pred cccCCCccCCccCCCCCCEEEEEEEcCC----------------CcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCC
Confidence 432222 59999999999999843111 11222232211110 0111 12346899999999
Q ss_pred CceEEEEecCCCCCccceEEEEEec
Q 000177 1787 DSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1787 ds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+..+|+.-.+ .+.+|-.+
T Consensus 316 s~iLAv~~~~-------~vqLWt~~ 333 (928)
T PF04762_consen 316 SEILAVWLED-------RVQLWTRS 333 (928)
T ss_pred CCEEEEEecC-------CceEEEee
Confidence 9999997522 27777654
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.53 E-value=0.0044 Score=71.98 Aligned_cols=204 Identities=16% Similarity=0.117 Sum_probs=127.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCc-eeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc--ce
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSP-LESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG--CK 1596 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~-l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g--h~ 1596 (1922)
.-.+|+.|+.-|...+|.+.+.+. ++....|...|+-+.-.-...-.+++++.|.+++++++.-...+....+.. .+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 345899999999999999987654 344466666665442111112356777889999999887522222222222 57
Q ss_pred eEEEcCCCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCC
Q 000177 1597 AARFSNSGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN 1670 (1922)
Q Consensus 1597 sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt 1670 (1922)
++.++++++++++. +.-..|..|.+.... .+..+. .. ..........|+..+..++++. .|||+|.
T Consensus 163 s~~~snd~~~~~~V---gds~~Vf~y~id~~sey~~~~~---~a--~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSV---GDSRRVFRYAIDDESEYIENIY---EA--PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeEEcCCCceEEEe---cCCCcceEEEeCCccceeeeeE---ec--ccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence 89999999999998 666788889886432 222211 00 0123345588999998888766 8999996
Q ss_pred Ccceeee-----ccCCCce-EEEEecCCC---EEEEEe----EEEecCCCeEEEEEcCCCceeEEEccCCCEEEEE
Q 000177 1671 SVPVHRF-----DQFTDHG-GGGFHPAGN---EVIINS----EVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1671 gk~I~kf-----~gh~~~V-sVaFSPdG~---~LASGS----eIWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSg 1733 (1922)
-...+.+ ..|++.+ .+.|+|-|. .+++-. .+-|+|+++-.+.+.-.+ .+-++|..+.|+.+
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~--d~~~~~~tq~ifgt 308 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD--DVERKHNTQHIFGT 308 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc--cccccccccccccc
Confidence 5422222 3466777 889998664 223322 488999887655543222 23455555544443
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.52 E-value=0.00012 Score=88.29 Aligned_cols=84 Identities=20% Similarity=0.359 Sum_probs=70.6
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEecc
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNA 1581 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl 1581 (1922)
+-||- +.++.++|+||+++|+|+..|..|+|-....-..+.+| -||+..|..+ +..++ +.|++ |.|++|++||+
T Consensus 147 ~lGhv-Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i--sl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 147 ILGHV-SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI--SLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhh-hhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeee--eeccC-ceeeecCCCCcEEEEec
Confidence 34899 99999999999999999999999999888766666666 7899999999 55544 45555 67999999999
Q ss_pred CCCCCCcceEec
Q 000177 1582 SSIAGGPMHSFE 1593 (1922)
Q Consensus 1582 ~t~~gk~l~tf~ 1593 (1922)
.+ +++++++.
T Consensus 223 ~s--gk~L~t~d 232 (390)
T KOG3914|consen 223 TS--GKLLDTCD 232 (390)
T ss_pred cc--CCcccccc
Confidence 98 88877664
No 289
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0021 Score=77.82 Aligned_cols=247 Identities=12% Similarity=0.104 Sum_probs=138.8
Q ss_pred EEEEECCCCCceeeeccCCCCeeEEEeeecCCCc-EEEE-ecCCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEE
Q 000177 1533 LKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ-LLLS-SSSQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLF 1607 (1922)
Q Consensus 1533 IkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~-lLaS-SsDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~L 1607 (1922)
|++.+..+.+....+.+|...|..+ +|||..+ ++.. +-+.+|+|.|+++ ..++.++.. .|+++|.-+...+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~Irdl--afSp~~~GLl~~asl~nkiki~dlet--~~~vssy~a~~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDL--AFSPFNEGLLGLASLGNKIKIMDLET--SCVVSSYIAYNQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhh--ccCccccceeeeeccCceEEEEeccc--ceeeeheeccCCceeeeeccCCcce
Confidence 6777766667667678899999999 8898877 4444 5599999999998 555555544 4999999976554
Q ss_pred EEeecCCCCCeEEEEECCCCce-eeeecc-ccccccCCCCcceEEEEcCCCCeEeecc---EEEEcCCC--cceeeeccC
Q 000177 1608 AALPTETSDRGILLYDIQTYQL-EAKLSD-TSVNLTGRGHAYSQIHFSPSDTMLLWNG---ILWDRRNS--VPVHRFDQF 1680 (1922)
Q Consensus 1608 aSgS~~S~DgtIrIWDlrTgk~-i~tL~d-~s~~~~~~gh~~~vVaFSPdG~lLaSgg---rLWDlrtg--k~I~kf~gh 1680 (1922)
+.++ -..|.|.|||++...- +..+.. ...+...+-|...--...+.|.+++... ..|.+... .+.....-.
T Consensus 251 IYaG--l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele 328 (463)
T KOG1645|consen 251 IYAG--LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELE 328 (463)
T ss_pred eEEe--ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccC
Confidence 4441 6789999999986432 111110 0000000000000012334455555333 67776532 223333222
Q ss_pred CC--ceEEEEecCCCEEEEEeE-------------EEecCCCeEEEEE-cCC---C------ceeEEEccCCCEEEEEEc
Q 000177 1681 TD--HGGGGFHPAGNEVIINSE-------------VWDLRKFRLLRSV-PSL---D------QTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1681 ~~--~VsVaFSPdG~~LASGSe-------------IWDLrTgklL~tl-~gH---~------~~sVaFSPdG~~LaSgs~ 1735 (1922)
.. .++..+++-.+.++..-+ --|.++|..+-.. +++ . ...+.-.++.++|+....
T Consensus 329 ~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd 408 (463)
T KOG1645|consen 329 PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD 408 (463)
T ss_pred CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC
Confidence 22 235666665555544431 0122223222111 111 1 123333455555555421
Q ss_pred cCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcC--CCceEEEEecCCCCCccceEEEEEe
Q 000177 1736 RNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATER--TDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1736 ~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SP--dds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
-...+..+|...+..+.+...+.+|.|++... .+.++++.. +..|+||.+
T Consensus 409 ------------------~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-------d~~v~Iyk~ 460 (463)
T KOG1645|consen 409 ------------------STNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-------DDRVHIYKN 460 (463)
T ss_pred ------------------CcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-------cceEEEEec
Confidence 12356778888888888888899999998754 244777652 345777764
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.00016 Score=88.41 Aligned_cols=161 Identities=18% Similarity=0.227 Sum_probs=109.8
Q ss_pred eeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCC-----CCcceEeccc----eeEEEcCCCCEEEEeecCC
Q 000177 1544 LESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIA-----GGPMHSFEGC----KAARFSNSGNLFAALPTET 1614 (1922)
Q Consensus 1544 l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~-----gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S 1614 (1922)
+..|.||+..|..+. +.+..+.++..+.|++|++|.++... ..|.++++.| +.+.|-.+-++++++
T Consensus 728 L~nf~GH~~~iRai~-AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc---- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIA-AIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC---- 802 (1034)
T ss_pred eecccCcHHHhHHHH-hcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec----
Confidence 456789999999884 56667778777999999999997621 1244556555 678888888888876
Q ss_pred CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC-CCCeEeecc------EEEEcCCCcceeeecc-----CCC
Q 000177 1615 SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP-SDTMLLWNG------ILWDRRNSVPVHRFDQ-----FTD 1682 (1922)
Q Consensus 1615 ~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP-dG~lLaSgg------rLWDlrtgk~I~kf~g-----h~~ 1682 (1922)
|+.|++||.--+..+..+.+.. .++...++.+.-. +..+++.+. +++|.|.+.-+..++. .+.
T Consensus 803 -D~giHlWDPFigr~Laq~~dap----k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna 877 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAP----KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA 877 (1034)
T ss_pred -cCcceeecccccchhHhhhcCc----ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCch
Confidence 6779999988777766544211 1223333333333 333444332 9999998875555532 333
Q ss_pred ce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1683 HG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1683 ~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
.+ +++..|.|++++.+- -+.|.++|+.+..+.
T Consensus 878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 34 889999999988764 388999998877554
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.38 E-value=0.0048 Score=71.67 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=108.0
Q ss_pred EEEEEeCCCcEEEEECCCCCceeeeccCCCC--eeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc-----
Q 000177 1523 HIAVGSHTKELKIFDSNSSSPLESCTSHQAP--VTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG----- 1594 (1922)
Q Consensus 1523 lLASGS~DGtIkIWDl~tgk~l~tL~gHss~--VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g----- 1594 (1922)
-+..++.|.++++.++.-+..... -|... ++++ ++++|++++++ |+...|.+|.+.......+.+...
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~--~h~~~~~~ns~--~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~ 205 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFA--VHNQNLTQNSL--HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH 205 (344)
T ss_pred ceeeccCCcceeEEEEecCcccce--eeccccceeee--EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence 567788999999998865433222 23333 6677 89999999999 778889999997632222332221
Q ss_pred ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC---eEeecc----EEEE
Q 000177 1595 CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT---MLLWNG----ILWD 1667 (1922)
Q Consensus 1595 h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~---lLaSgg----rLWD 1667 (1922)
-.+..|+.....|+++ ..||++.|||++......... +...+.+.....++.|+|-|. ++++-+ .+-|
T Consensus 206 gF~~S~s~~~~~FAv~---~Qdg~~~I~DVR~~~tpm~~~--sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVV---FQDGTCAIYDVRNMATPMAEI--SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred ceeeeeccCcceEEEE---ecCCcEEEEEecccccchhhh--cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 2788999999999999 899999999999754433222 111111223334489998663 344555 8999
Q ss_pred cCCCcceeeec-------cCC-Cce-EEEEecCCCEEEEEe
Q 000177 1668 RRNSVPVHRFD-------QFT-DHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1668 lrtgk~I~kf~-------gh~-~~V-sVaFSPdG~~LASGS 1699 (1922)
+|+++-...+. .|. +.+ ...|+.++.-+.+.+
T Consensus 281 ~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 281 TRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred cccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 99886443331 222 223 667776665554444
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.37 E-value=0.0015 Score=79.16 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=97.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc----eeeeccCCCCeeEEEeeecC-CCcEEEE---ecCCcEEEeccC
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP----LESCTSHQAPVTLVQSHLSG-ETQLLLS---SSSQDVHLWNAS 1582 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~----l~tL~gHss~VtsLq~afSp-DG~lLaS---SsDgtVkLWDl~ 1582 (1922)
.++.+.+++.+++||.+..+....++++..... ...+ +-...-+.+ .|.. +...+++ |+...+.+|...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai--~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAI--SFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCccee--eeeeccceEEEEeecCCceeeeeeccc
Confidence 345667788899999998888887887765443 1111 111122223 2222 3334444 346677788776
Q ss_pred CCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE--EEEcCCC
Q 000177 1583 SIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ--IHFSPSD 1656 (1922)
Q Consensus 1583 t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v--VaFSPdG 1656 (1922)
. +.+. .+-|| ..++|+||+++|+++ ..|..|+|-....-..+.+|. .||...+ ++.-++.
T Consensus 141 ~--~~~~-~~lGhvSml~dVavS~D~~~Iita---DRDEkIRvs~ypa~f~Iesfc--------lGH~eFVS~isl~~~~ 206 (390)
T KOG3914|consen 141 S--GRCE-PILGHVSMLLDVAVSPDDQFIITA---DRDEKIRVSRYPATFVIESFC--------LGHKEFVSTISLTDNY 206 (390)
T ss_pred c--cCcc-hhhhhhhhhheeeecCCCCEEEEe---cCCceEEEEecCcccchhhhc--------cccHhheeeeeeccCc
Confidence 4 3332 22243 789999999999999 889999987776555555554 4676665 6666554
Q ss_pred CeEeecc-----EEEEcCCCcceeeecc
Q 000177 1657 TMLLWNG-----ILWDRRNSVPVHRFDQ 1679 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlrtgk~I~kf~g 1679 (1922)
. |+++| ++||+++|+++++++-
T Consensus 207 ~-LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 207 L-LLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred e-eeecCCCCcEEEEecccCCcccccch
Confidence 4 55555 9999999999887753
No 293
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.0096 Score=75.24 Aligned_cols=166 Identities=19% Similarity=0.244 Sum_probs=104.6
Q ss_pred eecCCCcEEEEe---c-C-CcEEEeccCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1560 HLSGETQLLLSS---S-S-QDVHLWNASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1560 afSpDG~lLaSS---s-D-gtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
.|+|+++.++.. . . ..+.++|+.+.....+..+.++ ....|+|||++|+.+......-.|.++|+.+++... +
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-L 277 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-L 277 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-c
Confidence 789998877653 2 3 4699999998444445566665 567899999999988655455567788888776333 4
Q ss_pred ccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceeeeccC-CCceEEEEecCCCEEEEEeE----
Q 000177 1634 SDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQF-TDHGGGGFHPAGNEVIINSE---- 1700 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh-~~~VsVaFSPdG~~LASGSe---- 1700 (1922)
.. ..+... .-.|+|+|+.++-.+ .++|...+.. ..+... .......|+|+|++|+..+.
T Consensus 278 t~------~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~ 349 (425)
T COG0823 278 TN------GFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ 349 (425)
T ss_pred cc------CCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCc
Confidence 31 111111 378999999988544 4555554443 222222 22227899999999988772
Q ss_pred ----EEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEE
Q 000177 1701 ----VWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1701 ----IWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs 1734 (1922)
+.|+.++..++.+..... ..-.|.|+|.++....
T Consensus 350 ~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 350 WDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred eeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEec
Confidence 233333332333332222 4778999999888763
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.32 E-value=0.012 Score=69.28 Aligned_cols=186 Identities=17% Similarity=0.133 Sum_probs=104.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc-C------CCCeeEEEeeecCC-------CcEEEEecCCcE
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS-H------QAPVTLVQSHLSGE-------TQLLLSSSSQDV 1576 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-H------ss~VtsLq~afSpD-------G~lLaSSsDgtV 1576 (1922)
.-..++||||+.+||.+...|+|++||+.. ..+..+.. + ..+|..+.| .+- -.+|+..-+|.+
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~F--l~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIF--LEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEe--eccccccccceeEEEEecccee
Confidence 456799999999999999999999999864 44444422 1 345555632 221 245555667766
Q ss_pred EEeccCC---CCCCcceEec-------cceeEEEcCCCCEEEEeecCCCCC--------eEEEEECCCCceeeeeccccc
Q 000177 1577 HLWNASS---IAGGPMHSFE-------GCKAARFSNSGNLFAALPTETSDR--------GILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1577 kLWDl~t---~~gk~l~tf~-------gh~sVaFSPDG~~LaSgS~~S~Dg--------tIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
+=|-+.. ...+..++|. |+.++.|+|..+.|+.|+....+. -+..|.+-++.+-
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py-------- 193 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY-------- 193 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCc--------
Confidence 6555422 1122334432 358899999988888875433221 1333333322211
Q ss_pred cccCCCCcceEEEEcCCCCeEeec-c-EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1639 NLTGRGHAYSQIHFSPSDTMLLWN-G-ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1639 ~~~~~gh~~~vVaFSPdG~lLaSg-g-rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
.....+-+...-... . .+|.+-+.+.........+.| .+..||||..||+.. -+|++-+.++.
T Consensus 194 ---------yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 194 ---------YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ---------EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 111111111111111 1 344433322222112233455 899999999999887 49999887777
Q ss_pred EEEcCC
Q 000177 1711 RSVPSL 1716 (1922)
Q Consensus 1711 ~tl~gH 1716 (1922)
+..+-.
T Consensus 265 ~~W~~~ 270 (282)
T PF15492_consen 265 RSWKQD 270 (282)
T ss_pred cccchh
Confidence 666533
No 295
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.25 E-value=0.066 Score=64.69 Aligned_cols=198 Identities=16% Similarity=0.177 Sum_probs=124.4
Q ss_pred eecCC-CcEEEEec-CC-cEEEeccCCCCCCcceEecc----c--eeEEEcCCCCEEEEeecC--CCCCeEEEEECC-CC
Q 000177 1560 HLSGE-TQLLLSSS-SQ-DVHLWNASSIAGGPMHSFEG----C--KAARFSNSGNLFAALPTE--TSDRGILLYDIQ-TY 1627 (1922)
Q Consensus 1560 afSpD-G~lLaSSs-Dg-tVkLWDl~t~~gk~l~tf~g----h--~sVaFSPDG~~LaSgS~~--S~DgtIrIWDlr-Tg 1627 (1922)
+.+|. ...++.+. -| ...+||..+ ++.+..+.. | -...|++||++|++.-.+ ...|.|-|||.. +.
T Consensus 11 a~~p~~~~avafaRRPG~~~~v~D~~~--g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRPGTFALVFDCRT--GQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred eeCCCCCeEEEEEeCCCcEEEEEEcCC--CceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 56774 44444453 33 477899887 666655532 2 236899999999997322 346889999999 66
Q ss_pred ceeeeeccccccccCCCCcceE--EEEcCCCCeEe-ecc----------------------EEEEcCCCcceeeec----
Q 000177 1628 QLEAKLSDTSVNLTGRGHAYSQ--IHFSPSDTMLL-WNG----------------------ILWDRRNSVPVHRFD---- 1678 (1922)
Q Consensus 1628 k~i~tL~d~s~~~~~~gh~~~v--VaFSPdG~lLa-Sgg----------------------rLWDlrtgk~I~kf~---- 1678 (1922)
+.+..+. .|.+.- +.+.|||+.|+ ..| .+-|..+|+.+.+..
T Consensus 89 ~ri~E~~---------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 89 RRIGEFP---------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred EEEeEec---------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 6666665 222222 88999995544 433 456677888776643
Q ss_pred cCCCce-EEEEecCCCEEEEEe---E-------EEecCCCeEEEEEcCCC-------c--eeEEEccCCCEEEEEEccCc
Q 000177 1679 QFTDHG-GGGFHPAGNEVIINS---E-------VWDLRKFRLLRSVPSLD-------Q--TTITFNARGDVIYAILRRNL 1738 (1922)
Q Consensus 1679 gh~~~V-sVaFSPdG~~LASGS---e-------IWDLrTgklL~tl~gH~-------~--~sVaFSPdG~~LaSgs~~d~ 1738 (1922)
-|...+ -+++.++|..++..- . +.-.+.++.+..+.... . -+|+++++|.++++++
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts---- 235 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS---- 235 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC----
Confidence 255566 889999987665544 1 33333444444443221 1 4999999999998873
Q ss_pred hhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCC
Q 000177 1739 EDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTD 1787 (1922)
Q Consensus 1739 ~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdd 1787 (1922)
|....+.+||..+...+...... .+..++..+++
T Consensus 236 --------------PrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~ 269 (305)
T PF07433_consen 236 --------------PRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG 269 (305)
T ss_pred --------------CCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc
Confidence 45567778887777766555432 23344444444
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.25 E-value=0.00086 Score=79.70 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=101.2
Q ss_pred cCCCcEEEEecCCcEEEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC-----ceeeeeccc
Q 000177 1562 SGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTY-----QLEAKLSDT 1636 (1922)
Q Consensus 1562 SpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg-----k~i~tL~d~ 1636 (1922)
+-.+..+++|.+..|-|-|+.++.++...+-..+.+..|+..++.+..| ...|.|..+|++.+ .+...+.
T Consensus 222 ni~gyhfs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~G---cRngeI~~iDLR~rnqG~~~~a~rly-- 296 (425)
T KOG2695|consen 222 NIMGYHFSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNG---CRNGEIFVIDLRCRNQGNGWCAQRLY-- 296 (425)
T ss_pred ccceeeecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEec---ccCCcEEEEEeeecccCCCcceEEEE--
Confidence 3345555567888999999988444434444456788899888888888 78899999999975 3344443
Q ss_pred cccccCCCCcceEEEEcC-CCCeEeecc-----EEEEcCCCcc---eeeeccCCCce-E--EEEecCCCEEEEEe-----
Q 000177 1637 SVNLTGRGHAYSQIHFSP-SDTMLLWNG-----ILWDRRNSVP---VHRFDQFTDHG-G--GGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSP-dG~lLaSgg-----rLWDlrtgk~---I~kf~gh~~~V-s--VaFSPdG~~LASGS----- 1699 (1922)
++..+.++..-. ++++|++.+ ++||.|.-++ |.+|.||.+.. . +..++....|++++
T Consensus 297 ------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 297 ------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred ------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence 333333333333 566776555 9999997666 99999998755 3 44456666777777
Q ss_pred EEEecCCCeEEEEEcC
Q 000177 1700 EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1700 eIWDLrTgklL~tl~g 1715 (1922)
+||.++.++++.+++-
T Consensus 371 RiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPF 386 (425)
T ss_pred EEEecccCceeeccCC
Confidence 6999999999999883
No 297
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.24 E-value=0.0019 Score=76.99 Aligned_cols=89 Identities=13% Similarity=0.243 Sum_probs=73.0
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-eeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP-LESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~-l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
++......++.++.+|. ++|+|++|.+...+|++|..|..|.+||+.-++. ...+.+|...|..+ .+.+-.+.+.+
T Consensus 181 r~~~~~~~~i~~~~~h~-~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l--~~~~~t~~l~S 257 (404)
T KOG1409|consen 181 KLEQNGCQLITTFNGHT-GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL--SYAQHTRQLIS 257 (404)
T ss_pred EEeecCCceEEEEcCcc-cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh--hhhhhheeeee
Confidence 34455667889999999 9999999999999999999999999999965543 34668999999999 44455555555
Q ss_pred -ecCCcEEEeccCC
Q 000177 1571 -SSSQDVHLWNASS 1583 (1922)
Q Consensus 1571 -SsDgtVkLWDl~t 1583 (1922)
+.|+.|.+||++.
T Consensus 258 ~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 258 CGEDGGIVVWNMNV 271 (404)
T ss_pred ccCCCeEEEEeccc
Confidence 6699999999975
No 298
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0034 Score=73.65 Aligned_cols=174 Identities=13% Similarity=0.087 Sum_probs=113.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--eeeccCCCCeeEEEeeecCC-CcEEEEe-cCCcEEEeccCCCCCC
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL--ESCTSHQAPVTLVQSHLSGE-TQLLLSS-SSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l--~tL~gHss~VtsLq~afSpD-G~lLaSS-sDgtVkLWDl~t~~gk 1587 (1922)
-.++.|++.+..++++..+|.+.+-+....... ++++.|.-+++.. .|+.. .+++.+| +|+.+.-||++.+ ++
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta--~f~~~~pnlvytGgDD~~l~~~D~R~p-~~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTA--KFSDKEPNLVYTGGDDGSLSCWDIRIP-KT 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeee--ecccCCCceEEecCCCceEEEEEecCC-cc
Confidence 457889999999999999999996665555444 3789999999999 44433 3577775 5999999999942 33
Q ss_pred cceEe-----ccceeEEEcC-CCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCcceEEEEcCCCCe--
Q 000177 1588 PMHSF-----EGCKAARFSN-SGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM-- 1658 (1922)
Q Consensus 1588 ~l~tf-----~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l-- 1658 (1922)
.+.+- .|+.++.-+| .+.+|++| +.|..|++||.+. ++++..-+ .+..++.+.++|.-..
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TG---sYDe~i~~~DtRnm~kPl~~~~--------v~GGVWRi~~~p~~~~~l 269 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATG---SYDECIRVLDTRNMGKPLFKAK--------VGGGVWRIKHHPEIFHRL 269 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEe---ccccceeeeehhcccCccccCc--------cccceEEEEecchhhhHH
Confidence 33331 2345666565 57899999 8999999999994 45443322 3456677888887652
Q ss_pred Eeec---c-EEEEcCCCcc-----eeeeccCCCce-EEEEecCCCEEEEEe
Q 000177 1659 LLWN---G-ILWDRRNSVP-----VHRFDQFTDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1659 LaSg---g-rLWDlrtgk~-----I~kf~gh~~~V-sVaFSPdG~~LASGS 1699 (1922)
++++ | +|-+...+.. ...++.|..-. ...|.....+|++++
T Consensus 270 L~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 270 LAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred HHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeee
Confidence 2222 1 7777765432 22223333322 445533345666655
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.20 E-value=0.018 Score=65.56 Aligned_cols=183 Identities=13% Similarity=0.072 Sum_probs=110.2
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEe-ccc--
Q 000177 1519 GDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSF-EGC-- 1595 (1922)
Q Consensus 1519 PDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf-~gh-- 1595 (1922)
+++.++++++.++.|..||..+|+.+..+.. ...+... ....++.+++.+.++.+..+|..+ ++.+.++ ...
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~--~~~~~~~v~v~~~~~~l~~~d~~t--G~~~W~~~~~~~~ 108 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGA--PVVDGGRVYVGTSDGSLYALDAKT--GKVLWSIYLTSSP 108 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSG--EEEETTEEEEEETTSEEEEEETTT--SCEEEEEEE-SSC
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccce--eeecccccccccceeeeEecccCC--cceeeeecccccc
Confidence 3577888889999999999999998877654 2222111 112356666667788999999888 7777764 211
Q ss_pred -----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC---CCcceEEEEcCCCCeEeecc----
Q 000177 1596 -----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR---GHAYSQIHFSPSDTMLLWNG---- 1663 (1922)
Q Consensus 1596 -----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~---gh~~~vVaFSPdG~lLaSgg---- 1663 (1922)
.......+++.++.+ ..++.|..+|+++|+.+....-........ ......-.+..++.++++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~---~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~ 185 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVG---TSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRV 185 (238)
T ss_dssp TCSTB--SEEEEETTEEEEE---ETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSE
T ss_pred ccccccccCceEecCEEEEE---eccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeE
Confidence 122233347777776 558999999999999988775111000000 00011111222445555443
Q ss_pred EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1664 ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1664 rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
..+|+.+++.+.... .........+++..|++++ -.||++|++.+-
T Consensus 186 ~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 186 VAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 334888888654332 2223223556777777766 389999998764
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.16 E-value=0.055 Score=64.04 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=83.2
Q ss_pred eecCCCcEEEEecCCcEEEeccCCCCCCcceEecc-------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1560 HLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG-------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1560 afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g-------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
+.+.+|++|+.-.|..|-|-..+.....++.+.+- -+.++|+||+..|+.+ ...|+|++||+.. ..+..
T Consensus 4 ~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a---~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 4 ALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYA---ESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred eecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEE---cCCCeEEEEeccc-ceeEE
Confidence 56789999998888888887776644444333321 1679999999999998 7789999999985 44556
Q ss_pred eccccccccCCCCcceEEEEcCCC-------CeEee--cc----EEEEcC---CCcceeeecc---CCCce-EEEEecCC
Q 000177 1633 LSDTSVNLTGRGHAYSQIHFSPSD-------TMLLW--NG----ILWDRR---NSVPVHRFDQ---FTDHG-GGGFHPAG 1692 (1922)
Q Consensus 1633 L~d~s~~~~~~gh~~~vVaFSPdG-------~lLaS--gg----rLWDlr---tgk~I~kf~g---h~~~V-sVaFSPdG 1692 (1922)
+++.........+.+..+.|-+.- ++++. .| .+-... ..+..+.|.. +...| +++|+|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 653221111111222224444322 33332 22 222222 2244555543 34566 89999999
Q ss_pred CEEEEEe
Q 000177 1693 NEVIINS 1699 (1922)
Q Consensus 1693 ~~LASGS 1699 (1922)
+.|++|+
T Consensus 160 ~LLlVgG 166 (282)
T PF15492_consen 160 RLLLVGG 166 (282)
T ss_pred CEEEEec
Confidence 8888887
No 301
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=97.15 E-value=0.00037 Score=94.02 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHHHHhcCChHHhhhHhhHhhhhcchhHHHHHhhhcccHHHHHHHHhhhh
Q 000177 662 ELAIQLLECTQDQARKNAALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDAA 713 (1922)
Q Consensus 662 ~yaLwLLecshds~r~~A~mFF~~sf~Fr~il~~FD~~dGLrkL~N~i~~l~ 713 (1922)
+|||-=|=.+=-|+|.. -++|++++--.||..|.. =-+..++++|....
T Consensus 2 ~Y~l~RLirGl~S~r~~--aR~Gfs~~Lte~l~~~~~-~~~~~vl~ll~~~~ 50 (784)
T PF04931_consen 2 QYALKRLIRGLASSRES--ARLGFSLALTELLSQLPE-ISVSSVLDLLKKKL 50 (784)
T ss_pred chhHHHHhcccCCChHH--HHHHHHHHHHHHHHhccc-CCHHHHHHHHHHhc
Confidence 46666554445555533 356777777778877753 33556666666543
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.14 E-value=0.00063 Score=56.43 Aligned_cols=38 Identities=16% Similarity=0.398 Sum_probs=34.0
Q ss_pred CCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1541 SSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1541 gk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
++++.++.+|.+.|++| +|+|++.+|+++ .|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i--~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSI--AWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEE--EEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEE--EEecccccceeeCCCCEEEEEC
Confidence 35678999999999999 889999999995 699999997
No 303
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.10 E-value=0.069 Score=69.54 Aligned_cols=179 Identities=15% Similarity=0.055 Sum_probs=105.8
Q ss_pred EEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeeccEEEEcCCCcceeee
Q 000177 1598 ARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNGILWDRRNSVPVHRF 1677 (1922)
Q Consensus 1598 VaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSggrLWDlrtgk~I~kf 1677 (1922)
+=++|||+.+... ....+.+.++|..+.+...++. .+.....+.++|+|+++++.+. +...+..+..+
T Consensus 198 ~PlpnDGk~l~~~--~ey~~~vSvID~etmeV~~qV~--------Vdgnpd~v~~spdGk~afvTsy--NsE~G~tl~em 265 (635)
T PRK02888 198 IPLPNDGKDLDDP--KKYRSLFTAVDAETMEVAWQVM--------VDGNLDNVDTDYDGKYAFSTCY--NSEEGVTLAEM 265 (635)
T ss_pred cccCCCCCEeecc--cceeEEEEEEECccceEEEEEE--------eCCCcccceECCCCCEEEEecc--CcccCcceeee
Confidence 3445566655433 2456778888888877766654 1112223899999999886642 33333333333
Q ss_pred ccCCCceEEE--------EecCCCEEEEEe---EEEecCC-----CeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchh
Q 000177 1678 DQFTDHGGGG--------FHPAGNEVIINS---EVWDLRK-----FRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLED 1740 (1922)
Q Consensus 1678 ~gh~~~VsVa--------FSPdG~~LASGS---eIWDLrT-----gklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~d 1740 (1922)
........+. +.++|++...++ .++|.++ .+.+..++--.. +.+.+||||++++++..
T Consensus 266 ~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank----- 340 (635)
T PRK02888 266 MAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK----- 340 (635)
T ss_pred ccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC-----
Confidence 3222222333 345787766655 3889988 567777774444 89999999999998832
Q ss_pred hhhhhcccccccCCcceEEEEecCCCce------------eeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1741 VMSAVHTRRVKHPLFAAFRTVDAINYSD------------IATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1741 v~s~lh~rr~ksp~~ssFrt~Da~dys~------------IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
+.+...++|....+. ++.+.+.-.-...+|+++|.... +-..++.+-.|
T Consensus 341 -------------lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ayt------slf~dsqv~kw 401 (635)
T PRK02888 341 -------------LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYT------TLFLDSQIVKW 401 (635)
T ss_pred -------------CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEE------eEeecceeEEE
Confidence 223344444444332 45555555556777888775222 12344666677
Q ss_pred EecC
Q 000177 1809 EIGR 1812 (1922)
Q Consensus 1809 EVGr 1812 (1922)
++..
T Consensus 402 n~~~ 405 (635)
T PRK02888 402 NIEA 405 (635)
T ss_pred ehHH
Confidence 7654
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0061 Score=73.97 Aligned_cols=99 Identities=12% Similarity=0.197 Sum_probs=77.3
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
+.+.--.|++++.+.+|. ..|..++|||..+ +|..++.+..|+|.|+.+...+.++..| ..+++++|.... .++|.
T Consensus 176 ~~l~~~~fkssq~lp~~g-~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-~h~IY 252 (463)
T KOG1645|consen 176 QKLESHDFKSSQILPGEG-SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-RHVIY 252 (463)
T ss_pred EEeccCCcchhhcccccc-hhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-cceeE
Confidence 334455677788788888 8999999999777 8999999999999999999999999888 889999554332 45666
Q ss_pred Eec-CCcEEEeccCCCCCCcceEec
Q 000177 1570 SSS-SQDVHLWNASSIAGGPMHSFE 1593 (1922)
Q Consensus 1570 SSs-DgtVkLWDl~t~~gk~l~tf~ 1593 (1922)
+|. .|.|.|||++.. ..++..+.
T Consensus 253 aGl~nG~VlvyD~R~~-~~~~~e~~ 276 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQP-EGPLMELV 276 (463)
T ss_pred EeccCceEEEEEccCC-CchHhhhh
Confidence 675 899999999873 23344443
No 305
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.09 E-value=0.2 Score=61.96 Aligned_cols=223 Identities=14% Similarity=0.073 Sum_probs=121.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccce---
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCK--- 1596 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh~--- 1596 (1922)
++..++.++.+|.|..||..+|+.+...... ..+.+. ....++.+++.+.++.+..||..+ ++.+.++....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~--p~v~~~~v~v~~~~g~l~a~d~~t--G~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSP--PLVANGLVVVRTNDGRLTALDAAT--GERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecC--CEEECCEEEEECCCCeEEEEEcCC--CceeeEEccCCCce
Confidence 5678889999999999999999987665432 222221 111255666667799999999987 77666554321
Q ss_pred eEE--EcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc----ceEEEEcCCCCeEeec--c--E
Q 000177 1597 AAR--FSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA----YSQIHFSPSDTMLLWN--G--I 1664 (1922)
Q Consensus 1597 sVa--FSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~----~~vVaFSPdG~lLaSg--g--r 1664 (1922)
.+. -+| .+..++.+ ..++.+..+|.++|+.+..............+. .....+. ++.+++.+ + .
T Consensus 179 ~~~~~~sp~~~~~~v~~~---~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 179 TLRGSASPVIADGGVLVG---FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVSYQGRVA 254 (377)
T ss_pred eecCCCCCEEECCEEEEE---CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEEcCCEEE
Confidence 000 011 13456666 667899999999998766543100000000000 0001111 33333322 1 7
Q ss_pred EEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEEEEcc
Q 000177 1665 LWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1665 LWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaSgs~~ 1736 (1922)
.||..+|+.+...... ...... ..+..|+.++ ..+|..+++.+-....... .+... .|..|+++.
T Consensus 255 a~d~~tG~~~W~~~~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~-- 327 (377)
T TIGR03300 255 ALDLRSGRVLWKRDAS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD-- 327 (377)
T ss_pred EEECCCCcEEEeeccC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe--
Confidence 8898888877766521 111222 2344444433 2678878877655432111 12122 355666652
Q ss_pred CchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC
Q 000177 1737 NLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD 1775 (1922)
Q Consensus 1737 d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk 1775 (1922)
....+..++..+.+.+......
T Consensus 328 -----------------~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 328 -----------------FEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred -----------------CCCEEEEEECCCCCEEEEEEcC
Confidence 1234566777777777666553
No 306
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.08 E-value=0.042 Score=71.10 Aligned_cols=191 Identities=16% Similarity=0.102 Sum_probs=123.6
Q ss_pred CceeeEEecCCCCCCEEEEEEcCC------C------CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGD------S------SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPD------G------~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD 1564 (1922)
..+.++++.-|. ..|+.+.|.|- + -+||++...|.|.|||...+..+..+..|..+|..++|.+..+
T Consensus 44 s~q~iqsie~h~-s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 44 SLQLIQSIELHQ-SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhccccCc-cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 457788888999 99999999872 1 1678888899999999999998889999999999999876655
Q ss_pred Cc--EEEE-ecCCcEEEeccCCCCCCcceEecc-c---eeEEEcC-CCCEEEEeecCCCCCeEEEEECC-------CCce
Q 000177 1565 TQ--LLLS-SSSQDVHLWNASSIAGGPMHSFEG-C---KAARFSN-SGNLFAALPTETSDRGILLYDIQ-------TYQL 1629 (1922)
Q Consensus 1565 G~--lLaS-SsDgtVkLWDl~t~~gk~l~tf~g-h---~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlr-------Tgk~ 1629 (1922)
.. +|+. ....++.+|+..+ |+....+.. + .|+.+.| |.+.|..- +..|.+.+-+.- .|+.
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdt--G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l---~s~g~vl~~~~l~~sep~~pgk~ 197 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDT--GEKFWKYDYSHEILSCFRVDPFDSRHFCVL---GSKGFVLSCKDLGLSEPDVPGKE 197 (1062)
T ss_pred cchheeEEecCCcEEEEEEccC--CceeeccccCCcceeeeeeCCCCcceEEEE---ccCceEEEEeccCCCCCCCCcee
Confidence 43 4444 6788999999988 666655542 2 5577777 55555554 445556555542 1222
Q ss_pred eeeeccccc-----------cccCCCCc-----c--eEEEEcCCCCeEe--ecc---EEEEcCCCcceeeeccCCCce-E
Q 000177 1630 EAKLSDTSV-----------NLTGRGHA-----Y--SQIHFSPSDTMLL--WNG---ILWDRRNSVPVHRFDQFTDHG-G 1685 (1922)
Q Consensus 1630 i~tL~d~s~-----------~~~~~gh~-----~--~vVaFSPdG~lLa--Sgg---rLWDlrtgk~I~kf~gh~~~V-s 1685 (1922)
.+.-.+..- +....... - ..++|+|.-+.++ +-- .++|+.-..++....-..+.+ -
T Consensus 198 ~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akf 277 (1062)
T KOG1912|consen 198 FQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKF 277 (1062)
T ss_pred EEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcce
Confidence 222111000 00000000 0 0167788654333 222 899998888887776666655 5
Q ss_pred EEEecCCC
Q 000177 1686 GGFHPAGN 1693 (1922)
Q Consensus 1686 VaFSPdG~ 1693 (1922)
+.|-|+++
T Consensus 278 v~vlP~~~ 285 (1062)
T KOG1912|consen 278 VDVLPDPR 285 (1062)
T ss_pred eEeccCCC
Confidence 66666654
No 307
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=97.07 E-value=0.00017 Score=97.23 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 000177 1422 LDSLVVQYLKHQH 1434 (1922)
Q Consensus 1422 LdsIVtqyLr~QH 1434 (1922)
....+.+.+..+|
T Consensus 409 ~~~~~~~i~~~~~ 421 (784)
T PF04931_consen 409 SEQWVEDIFLFFH 421 (784)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444444
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.06 E-value=0.049 Score=63.29 Aligned_cols=172 Identities=12% Similarity=0.181 Sum_probs=102.8
Q ss_pred EEEEEEc-CCCCEEEEEeCCCcEEEEECCCCCceeeecc-----CCCCeeEEEeeecCCCcEEEEec-C--------CcE
Q 000177 1512 LTCITFL-GDSSHIAVGSHTKELKIFDSNSSSPLESCTS-----HQAPVTLVQSHLSGETQLLLSSS-S--------QDV 1576 (1922)
Q Consensus 1512 Vt~LaFS-PDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-----Hss~VtsLq~afSpDG~lLaSSs-D--------gtV 1576 (1922)
...+++. +++ .|+.+...+ +.++|..+++....+.. .....+.+ .+.++|++.++.. . +.|
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~--~vd~~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDV--AVDPDGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEE--EE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceE--EEcCCCCEEEEecCCCccccccccce
Confidence 6777888 565 455555544 45669988865443322 34556788 8899999888842 1 335
Q ss_pred EEeccCCCCCCcceE---eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce-e---eeeccccccccCCCCcceE
Q 000177 1577 HLWNASSIAGGPMHS---FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL-E---AKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~t---f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~-i---~tL~d~s~~~~~~gh~~~v 1649 (1922)
..++.. ++.... +...+.++|+|+++.|+.+ ++..+.|..||+..... + ..+. .. ......+.
T Consensus 118 ~~~~~~---~~~~~~~~~~~~pNGi~~s~dg~~lyv~--ds~~~~i~~~~~~~~~~~~~~~~~~~----~~-~~~~g~pD 187 (246)
T PF08450_consen 118 YRIDPD---GKVTVVADGLGFPNGIAFSPDGKTLYVA--DSFNGRIWRFDLDADGGELSNRRVFI----DF-PGGPGYPD 187 (246)
T ss_dssp EEEETT---SEEEEEEEEESSEEEEEEETTSSEEEEE--ETTTTEEEEEEEETTTCCEEEEEEEE----E--SSSSCEEE
T ss_pred EEECCC---CeEEEEecCcccccceEECCcchheeec--ccccceeEEEeccccccceeeeeeEE----Ec-CCCCcCCC
Confidence 555544 222222 2224889999999987765 36778899999864322 1 1111 00 01111222
Q ss_pred -EEEcCCCCeEeec--c---EEEEcCCCcceeeeccCCCce-EEEE-ecCCCEEEEE
Q 000177 1650 -IHFSPSDTMLLWN--G---ILWDRRNSVPVHRFDQFTDHG-GGGF-HPAGNEVIIN 1698 (1922)
Q Consensus 1650 -VaFSPdG~lLaSg--g---rLWDlrtgk~I~kf~gh~~~V-sVaF-SPdG~~LASG 1698 (1922)
+++..+|++.++. + .++|.. |+.+..+....... +++| .|+.+.|.+.
T Consensus 188 G~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred cceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 9999999988862 2 677766 88888887663444 9999 4776665543
No 309
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.98 E-value=0.2 Score=61.82 Aligned_cols=107 Identities=11% Similarity=0.052 Sum_probs=72.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccceeEE
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCKAAR 1599 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh~sVa 1599 (1922)
.+..|++++.+|.|.-||..+|+.+-.+.-........ .. .++.+++.+.++.+..||..+ ++.+.+......+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p--~v-~~~~v~v~~~~g~l~ald~~t--G~~~W~~~~~~~~~ 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGV--GA-DGGLVFVGTEKGEVIALDAED--GKELWRAKLSSEVL 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccce--EE-cCCEEEEEcCCCEEEEEECCC--CcEeeeeccCceee
Confidence 36789999999999999999998876654333222222 22 245555556799999999987 77666554321122
Q ss_pred EcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1600 FSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1600 FSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
-+| .+..++.+ ..++.+..||.++|+.+..+.
T Consensus 139 ~~p~v~~~~v~v~---~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 139 SPPLVANGLVVVR---TNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred cCCEEECCEEEEE---CCCCeEEEEEcCCCceeeEEc
Confidence 222 24556666 678999999999999887765
No 310
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.97 E-value=0.013 Score=74.00 Aligned_cols=174 Identities=16% Similarity=0.208 Sum_probs=109.0
Q ss_pred CCEEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEec--CCc--EEEe
Q 000177 1510 ALLTCITFLGDSSHIAVGS---HT-KELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSSS--SQD--VHLW 1579 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS---~D-GtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSSs--Dgt--VkLW 1579 (1922)
..+..-+|+|+++.++.-+ .. ..|.++++++++..... .+|.. .+.|+|||+.|+-+. |+. |.++
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~-----~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG-----APAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC-----CccCCCCCCEEEEEECCCCCccEEEE
Confidence 5677788999998765543 22 46899999988765544 44432 238899999888753 554 6677
Q ss_pred ccCCCCCCcceEec---cc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1580 NASSIAGGPMHSFE---GC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~---gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
|+.. +. +..+. ++ ..-.|+|||++|+..+..+.--.|.++|...+.. ..+.. .+.....-.|+|+
T Consensus 268 dl~~--~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~-------~~~~~~~p~~Spd 336 (425)
T COG0823 268 DLDG--KN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF-------SGGGNSNPVWSPD 336 (425)
T ss_pred cCCC--Cc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec-------cCCCCcCccCCCC
Confidence 7765 33 33333 22 5678999999999986655555788888887655 22320 1122225789999
Q ss_pred CCeEeecc--------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1656 DTMLLWNG--------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1656 G~lLaSgg--------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
|++++..+ .+.|+.++..++.+......-.-.|.|||..++..+
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEec
Confidence 99998554 233333333233332222222568888888776555
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.96 E-value=0.15 Score=58.05 Aligned_cols=193 Identities=17% Similarity=0.154 Sum_probs=107.3
Q ss_pred CCcEEEEECCCCCceeeecc---CCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc--eeEEEcCCC
Q 000177 1530 TKELKIFDSNSSSPLESCTS---HQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC--KAARFSNSG 1604 (1922)
Q Consensus 1530 DGtIkIWDl~tgk~l~tL~g---Hss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh--~sVaFSPDG 1604 (1922)
+|+|..||..+|+.+-...- ....+.. ....++.+++++.++.+..||..+ ++.+.++... ........+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~l~~~d~~t--G~~~W~~~~~~~~~~~~~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT---AVPDGGRVYVASGDGNLYALDAKT--GKVLWRFDLPGPISGAPVVDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET---EEEETTEEEEEETTSEEEEEETTT--SEEEEEEECSSCGGSGEEEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce---EEEeCCEEEEEcCCCEEEEEECCC--CCEEEEeeccccccceeeecc
Confidence 68899999999998877642 2222211 112355555556899999999988 7777666531 111112234
Q ss_pred CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec--c--EEEEcCCCcceeeeccC
Q 000177 1605 NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN--G--ILWDRRNSVPVHRFDQF 1680 (1922)
Q Consensus 1605 ~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg--g--rLWDlrtgk~I~kf~gh 1680 (1922)
..++.+ ..++.+..+|..+|+.+..+....... ..........+. .+.+++.. + ..+|+++|+.+.++...
T Consensus 77 ~~v~v~---~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 77 GRVYVG---TSDGSLYALDAKTGKVLWSIYLTSSPP-AGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp TEEEEE---ETTSEEEEEETTTSCEEEEEEE-SSCT-CSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred cccccc---cceeeeEecccCCcceeeeeccccccc-cccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 555555 466799999999999988742111000 001112223333 22333333 2 88899999988887664
Q ss_pred CCc----------e-EEEEecCCCEEEEEe-E----EEecCCCeEEEEEcCCCceeEEEccCCCEEEEEE
Q 000177 1681 TDH----------G-GGGFHPAGNEVIINS-E----VWDLRKFRLLRSVPSLDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1681 ~~~----------V-sVaFSPdG~~LASGS-e----IWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs 1734 (1922)
... + .-....++ .+..++ + .+|+.+++.+-..+ .........+.+..|+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECEECCCTEEEEEE
T ss_pred CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCceeeCCEEEEEe
Confidence 422 1 11122244 444333 1 23888888664333 2222222567777888774
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.023 Score=73.96 Aligned_cols=141 Identities=16% Similarity=0.254 Sum_probs=93.1
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-----CcEEEEec-CCcEEEeccCCCC-CCc--
Q 000177 1518 LGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-----TQLLLSSS-SQDVHLWNASSIA-GGP-- 1588 (1922)
Q Consensus 1518 SPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-----G~lLaSSs-DgtVkLWDl~t~~-gk~-- 1588 (1922)
..+|.+++|||.||+|.|..+.+.+...++.- .-++.+| +++|+ .+.+++|+ -| +.++.-+-.. ...
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksi--al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~ 155 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSI--ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV 155 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEec-CCcceeE--EeccchhhhhhhheeecCcce-EEEehhhhhcCcccee
Confidence 44799999999999999999988887766643 3678888 78887 34555544 55 7666433210 111
Q ss_pred ceEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ecc--E
Q 000177 1589 MHSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG--I 1664 (1922)
Q Consensus 1589 l~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg--r 1664 (1922)
.+.-.| +.++.|. |++|+-+ +.+| |++||+.+++.+..++.+. ......--.+.+.|.++.++++ ++. +
T Consensus 156 l~~~eG~I~~i~W~--g~lIAWa---nd~G-v~vyd~~~~~~l~~i~~p~-~~~R~e~fpphl~W~~~~~LVIGW~d~v~ 228 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWR--GNLIAWA---NDDG-VKVYDTPTRQRLTNIPPPS-QSVRPELFPPHLHWQDEDRLVIGWGDSVK 228 (846)
T ss_pred eecCccceEEEEec--CcEEEEe---cCCC-cEEEeccccceeeccCCCC-CCCCcccCCCceEecCCCeEEEecCCeEE
Confidence 122223 4788886 7788876 4444 8999999999988887433 1111111223399999999888 454 5
Q ss_pred EEEcC
Q 000177 1665 LWDRR 1669 (1922)
Q Consensus 1665 LWDlr 1669 (1922)
+..++
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 55665
No 313
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=96.87 E-value=0.0013 Score=51.86 Aligned_cols=27 Identities=41% Similarity=0.399 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHc
Q 000177 1169 RELLLLIHEHLQASGLVTTAAQLLKEA 1195 (1922)
Q Consensus 1169 ~ELL~LI~~HL~~~GL~~TA~~L~kEA 1195 (1922)
++|.+||++||+.+|+.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999997
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.11 Score=68.28 Aligned_cols=208 Identities=10% Similarity=0.148 Sum_probs=126.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCC-eeEEEeeecCCCcEEEE-ecCC-----cEEEeccCC
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAP-VTLVQSHLSGETQLLLS-SSSQ-----DVHLWNASS 1583 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~-VtsLq~afSpDG~lLaS-SsDg-----tVkLWDl~t 1583 (1922)
.|+| |++.+..++.|+.+|.|.+++- ..+.+..|+.+... |..+ ....+..+|++ +.|. .++||+++.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L--~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFL--YILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHh--hcccCceEEEEEeecCCCCceEEEEecccc
Confidence 4565 6678889999999998877763 34455778888777 6666 22333356766 5433 589999976
Q ss_pred CC-C---Ccc---eEec---c-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCC---CceeeeeccccccccCCCC
Q 000177 1584 IA-G---GPM---HSFE---G-----CKAARFSNSGNLFAALPTETSDRGILLYDIQT---YQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1584 ~~-g---k~l---~tf~---g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT---gk~i~tL~d~s~~~~~~gh 1645 (1922)
.. . .++ +.+. + ..+++.|.+-+.++.| -.+|.|..+.-.- ......+. ...+.
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~G---f~nG~V~~~~GDi~RDrgsr~~~~------~~~~~ 172 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCG---FTNGLVICYKGDILRDRGSRQDYS------HRGKE 172 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEE---ecCcEEEEEcCcchhccccceeee------ccCCC
Confidence 31 1 223 1111 0 2567888888888888 7789998885321 11111111 01234
Q ss_pred cceEEEEcCCCCe--Ee-ecc--EEEEcCCCccee-eeccCCCce-EEEEecCCC-EEEEEeE---EEecCCCeEEEEEc
Q 000177 1646 AYSQIHFSPSDTM--LL-WNG--ILWDRRNSVPVH-RFDQFTDHG-GGGFHPAGN-EVIINSE---VWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1646 ~~~vVaFSPdG~l--La-Sgg--rLWDlrtgk~I~-kf~gh~~~V-sVaFSPdG~-~LASGSe---IWDLrTgklL~tl~ 1714 (1922)
++.-++|..++.. ++ |.. .+|.+....+.. +++.+.... |..|++... +++++++ +|+....++-.++.
T Consensus 173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 4455888888765 33 333 788887333333 355555555 778887655 5666663 88887666666677
Q ss_pred -CCCceeEEEccCCCEEEEE
Q 000177 1715 -SLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1715 -gH~~~sVaFSPdG~~LaSg 1733 (1922)
||.. -+.|...|.+++..
T Consensus 253 ~g~kk-~~~~~~~g~~L~v~ 271 (933)
T KOG2114|consen 253 VGEKK-EMLVFSFGLLLCVT 271 (933)
T ss_pred CCCeE-EEEEEecCEEEEEE
Confidence 5554 44455556666655
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.76 E-value=0.049 Score=70.84 Aligned_cols=203 Identities=12% Similarity=0.072 Sum_probs=122.5
Q ss_pred EEEcCCCCEEE-EEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-----CCcEEEeccCCCCCCc
Q 000177 1515 ITFLGDSSHIA-VGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-----SQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1515 LaFSPDG~lLA-SGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-----DgtVkLWDl~t~~gk~ 1588 (1922)
+=++|||+.+. +.-..+.+.+.|..+.+...++.--. .-..+ .++++|+++.+++ ..++...+... ...
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v--~~spdGk~afvTsyNsE~G~tl~em~a~e--~d~ 272 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNV--DTDYDGKYAFSTCYNSEEGVTLAEMMAAE--RDW 272 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-Ccccc--eECCCCCEEEEeccCcccCcceeeecccc--Cce
Confidence 34566887653 33455677888888776665553211 22445 6788999887742 23455554433 222
Q ss_pred ceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-----CceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1589 MHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQT-----YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1589 l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-----gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
+..|.--..-++.++|++...+ +++|.++|.++ .+.+..++ .+....-+.++|||++++.++
T Consensus 273 ~vvfni~~iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIP--------VGKsPHGV~vSPDGkylyVan 339 (635)
T PRK02888 273 VVVFNIARIEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVP--------VPKNPHGVNTSPDGKYFIANG 339 (635)
T ss_pred EEEEchHHHHHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEE--------CCCCccceEECCCCCEEEEeC
Confidence 2222221222455678866653 47899999998 34555554 123333389999999999777
Q ss_pred ------EEEEcCCCcc------------eeeeccCCCceEEEEecCCCEEEEEe-----EEEecCC----------CeEE
Q 000177 1664 ------ILWDRRNSVP------------VHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRK----------FRLL 1710 (1922)
Q Consensus 1664 ------rLWDlrtgk~------------I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrT----------gklL 1710 (1922)
.+.|+.+.+. +....-...+....|.++|+-..|-. -.||+.+ ...+
T Consensus 340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~ 419 (635)
T PRK02888 340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIV 419 (635)
T ss_pred CCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcce
Confidence 7999887542 33333334455789999987443333 2799876 3556
Q ss_pred EEEcCCCc-ee------EEEccCCCEEEEEEc
Q 000177 1711 RSVPSLDQ-TT------ITFNARGDVIYAILR 1735 (1922)
Q Consensus 1711 ~tl~gH~~-~s------VaFSPdG~~LaSgs~ 1735 (1922)
..+.-|-+ -. =.-.|+|++|++..+
T Consensus 420 ~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 420 QKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred ecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 66654443 12 234789999998843
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.0088 Score=77.63 Aligned_cols=165 Identities=11% Similarity=0.104 Sum_probs=108.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~ 1588 (1922)
+.++|++++ +++|+-|+.+|.|++++.+ ++. .+...|+.. .-+|.+++||+ ||+|.|-.+-+.....
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc--------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 568899988 7899999999999999974 443 444555543 34899999975 9999999887722222
Q ss_pred ceEecc-ceeEEEcCC-----CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1589 MHSFEG-CKAARFSNS-----GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1589 l~tf~g-h~sVaFSPD-----G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
...|+- ..+++++|+ .+.+++| +.-| +.++.-+=-+...+. ..+...+++.+.+=.|+++++.
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~G---G~ag-lvL~er~wlgnk~~v-------~l~~~eG~I~~i~W~g~lIAWa 176 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSG---GMAG-LVLSERNWLGNKDSV-------VLSEGEGPIHSIKWRGNLIAWA 176 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeec---Ccce-EEEehhhhhcCccce-------eeecCccceEEEEecCcEEEEe
Confidence 334433 488999997 5788887 5556 666653311111111 0122334444444468899977
Q ss_pred c----EEEEcCCCcceeeeccCCCce-------EEEEecCCCEEEE
Q 000177 1663 G----ILWDRRNSVPVHRFDQFTDHG-------GGGFHPAGNEVII 1697 (1922)
Q Consensus 1663 g----rLWDlrtgk~I~kf~gh~~~V-------sVaFSPdG~~LAS 1697 (1922)
. ++||+.+++.+..+......+ .+.|.++.+.|+.
T Consensus 177 nd~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG 222 (846)
T KOG2066|consen 177 NDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG 222 (846)
T ss_pred cCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe
Confidence 6 999999988777665443322 5788887665554
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.62 E-value=0.23 Score=67.67 Aligned_cols=206 Identities=15% Similarity=0.235 Sum_probs=127.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEecc----CC-
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNA----SS- 1583 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl----~t- 1583 (1922)
+.|.++.|..+++-|+.+..+|.|.+-|..+..... ..--...|.++ +||||.++++- ...+++.+.+- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aa--swS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAA--SWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEE--eecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 689999999999999999999999999887664322 22235778888 88999998877 44566544322 11
Q ss_pred ----------------CCCCcceEecc------------------------c-eeEEEcCCCCEEEEeecC-CCC-CeEE
Q 000177 1584 ----------------IAGGPMHSFEG------------------------C-KAARFSNSGNLFAALPTE-TSD-RGIL 1620 (1922)
Q Consensus 1584 ----------------~~gk~l~tf~g------------------------h-~sVaFSPDG~~LaSgS~~-S~D-gtIr 1620 (1922)
+-|+.-..|.| | ++|.|--||++|++..-. ..+ +.|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 00111112221 1 459999999999883211 123 7899
Q ss_pred EEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcc----eeeeccCCCce-EEE
Q 000177 1621 LYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVP----VHRFDQFTDHG-GGG 1687 (1922)
Q Consensus 1621 IWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~----I~kf~gh~~~V-sVa 1687 (1922)
+||-+ |..-. .. ........+++|-|.|.++++-. .+|. ++|-. +-.+......+ .++
T Consensus 226 V~drE-g~Lns-~s------e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 226 VYDRE-GALNS-TS------EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred Eeccc-chhhc-cc------CcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheee
Confidence 99987 44322 11 11233445599999999998554 3444 44422 22233333324 899
Q ss_pred EecCCCEEEEEe--------EEEecCCCeE--EEEEcCCCceeEEEccCC
Q 000177 1688 FHPAGNEVIINS--------EVWDLRKFRL--LRSVPSLDQTTITFNARG 1727 (1922)
Q Consensus 1688 FSPdG~~LASGS--------eIWDLrTgkl--L~tl~gH~~~sVaFSPdG 1727 (1922)
|+.++..|++-. ++|-+.+.+- .+.+.-...--+.|+|.-
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~ 346 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVT 346 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccccccccCCC
Confidence 999999998833 4898887643 222222222236677744
No 318
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=96.61 E-value=0.022 Score=68.26 Aligned_cols=125 Identities=16% Similarity=0.292 Sum_probs=85.8
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-------------------------------------
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDS------------------------------------- 1538 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl------------------------------------- 1538 (1922)
.+....+....|. ..|..+-|+-...++++.+.|..+.---.
T Consensus 102 nkm~~~r~~~~h~-~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQ-ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITML 180 (404)
T ss_pred hhcchhhhhhhhh-cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEE
Confidence 3444455556677 78888888877777777777765432111
Q ss_pred ----CCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEE
Q 000177 1539 ----NSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAA 1609 (1922)
Q Consensus 1539 ----~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaS 1609 (1922)
..-..+.++.+|.++|+++ .|.+...+|.+| +|..|.+||+.-. ......+.+| ..+..-+.-+.+++
T Consensus 181 r~~~~~~~~i~~~~~h~~~~~~l--~Wd~~~~~LfSg~~d~~vi~wdigg~-~g~~~el~gh~~kV~~l~~~~~t~~l~S 257 (404)
T KOG1409|consen 181 KLEQNGCQLITTFNGHTGEVTCL--KWDPGQRLLFSGASDHSVIMWDIGGR-KGTAYELQGHNDKVQALSYAQHTRQLIS 257 (404)
T ss_pred EEeecCCceEEEEcCcccceEEE--EEcCCCcEEEeccccCceEEEeccCC-cceeeeeccchhhhhhhhhhhhheeeee
Confidence 1112355778999999999 788888899886 5999999999741 1123444554 34444455677888
Q ss_pred eecCCCCCeEEEEECCCC
Q 000177 1610 LPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1610 gS~~S~DgtIrIWDlrTg 1627 (1922)
+ +.||.|.+||++..
T Consensus 258 ~---~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 258 C---GEDGGIVVWNMNVK 272 (404)
T ss_pred c---cCCCeEEEEeccce
Confidence 8 88999999999754
No 319
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.58 E-value=0.0063 Score=70.56 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=68.9
Q ss_pred eeeecCceeeEEecC-CC-CCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCc-eeeeccCCCCeeEEEeeecCC-C-
Q 000177 1492 QFVYSRFRPWRTCRD-DA-GALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSSP-LESCTSHQAPVTLVQSHLSGE-T- 1565 (1922)
Q Consensus 1492 ~fi~srfrpirtLrg-H~-d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~-l~tL~gHss~VtsLq~afSpD-G- 1565 (1922)
+|....++|+.+|.. |. ...|++++-+|. .+++++|+.||.|-+||...... ...++.|..+|+.+ .|+|. +
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV--~FHpk~p~ 237 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEV--HFHPKNPE 237 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhhe--eccCCCch
Confidence 455667888888775 22 256999999994 45778899999999999987744 34558999999999 67774 3
Q ss_pred cEEEEecCCcEEEeccCC
Q 000177 1566 QLLLSSSSQDVHLWNASS 1583 (1922)
Q Consensus 1566 ~lLaSSsDgtVkLWDl~t 1583 (1922)
+++.++.||.+.-||..+
T Consensus 238 ~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred heeEecCCCcEEEEcCCC
Confidence 455556799999999874
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.58 E-value=0.019 Score=75.18 Aligned_cols=169 Identities=17% Similarity=0.252 Sum_probs=116.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEecccee-
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGCKA- 1597 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh~s- 1597 (1922)
++..++-|+....+..+|+.+.+..+...-..+.|+-+ .. +++++.+|+ .|+|.|-|.++ .+.+++|..|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~--Nnr~lf~G~t~G~V~LrD~~s--~~~iht~~aHs~s 219 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RY--NNRNLFCGDTRGTVFLRDPNS--FETIHTFDAHSGS 219 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEE--Ee--cCcEEEeecccceEEeecCCc--Cceeeeeeccccc
Confidence 34567788888888899999988888776556668877 33 778888876 99999999998 888999999843
Q ss_pred -EEEcCCCCEEEEeecCC------CCCeEEEEECCCCceeeeeccccccccCCCCcc-eEEEEcCCC--CeEee-cc---
Q 000177 1598 -ARFSNSGNLFAALPTET------SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY-SQIHFSPSD--TMLLW-NG--- 1663 (1922)
Q Consensus 1598 -VaFSPDG~~LaSgS~~S------~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~-~vVaFSPdG--~lLaS-gg--- 1663 (1922)
..|.-.|+.|++|+... .|..|+|||++..+.+.-+. -+.. ..+.|+|.- +++++ .+
T Consensus 220 iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~---------~~~~P~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 220 ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ---------FPYGPQFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcc---------cccCchhhhhcccccceEEEEecccce
Confidence 56888899999995432 47789999999877655443 1112 227777754 23332 22
Q ss_pred EEEEcCC-Ccc---eeeeccCCCce-EEEEecCCCEEEEEe-----EEEe
Q 000177 1664 ILWDRRN-SVP---VHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWD 1703 (1922)
Q Consensus 1664 rLWDlrt-gk~---I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWD 1703 (1922)
.+-|..+ +.+ +..+......+ ..+++++|+.++.|. .+|-
T Consensus 291 q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 291 QFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 5555221 222 22232233334 889999999999987 3775
No 321
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.53 E-value=0.0055 Score=47.05 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=34.3
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFD 1537 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWD 1537 (1922)
+++..+..|. ..|+++.|++++.++++|+.|+.|++|+
T Consensus 3 ~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHT-GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecC-CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778898 8999999999999999999999999996
No 322
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.031 Score=68.79 Aligned_cols=206 Identities=14% Similarity=0.154 Sum_probs=135.2
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCC--cEEEEe--cC
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSH-TKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGET--QLLLSS--SS 1573 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~-DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG--~lLaSS--sD 1573 (1922)
+..++.|- +.|.+++.+-+|.++.|++. |..+|+||+.+...+..+ ..-.+.+..+ .++.. .+|+.+ .+
T Consensus 46 VKhFraHL-~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv---~skGd~~s~IAVs~~~s 121 (558)
T KOG0882|consen 46 VKHFRAHL-GVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV---TSKGDKISLIAVSLFKS 121 (558)
T ss_pred hhhhHHHH-HHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe---cCCCCeeeeEEeecccC
Confidence 45567888 89999999999999999887 999999999876554322 2222333333 23321 244444 48
Q ss_pred CcEEEeccCCCCCCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-Cce-----eeeec-ccccccc
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQL-----EAKLS-DTSVNLT 1641 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~-----i~tL~-d~s~~~~ 1641 (1922)
+.+.++|-... ..+...+.+ +.++.+++.++.+++. ...|.|.-|.... .+. ...++ ++.+...
T Consensus 122 g~i~VvD~~~d-~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi---D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f 197 (558)
T KOG0882|consen 122 GKIFVVDGFGD-FCQDGYFKKLHFSPVKKIRYNQAGDSAVSI---DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF 197 (558)
T ss_pred CCcEEECCcCC-cCccceecccccCceEEEEeeccccceeec---cccceeEeecCCCcccCccccccccccccchhhcc
Confidence 89999998752 323333433 4778889999988887 6678999998872 111 11111 0111111
Q ss_pred CCCCcc-eEEEEcCCCCeEeecc-----EEEEcCCCcceeeec--------------------------------cCCCc
Q 000177 1642 GRGHAY-SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD--------------------------------QFTDH 1683 (1922)
Q Consensus 1642 ~~gh~~-~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~--------------------------------gh~~~ 1683 (1922)
...... ..+.|+|+|..+.+-+ ++++.++|+.++.++ .+...
T Consensus 198 ~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~ 277 (558)
T KOG0882|consen 198 PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST 277 (558)
T ss_pred cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc
Confidence 112222 2399999999888666 788888887665442 12222
Q ss_pred e--EEEEecCCCEEEEEe----EEEecCCCeEEEEEc
Q 000177 1684 G--GGGFHPAGNEVIINS----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1684 V--sVaFSPdG~~LASGS----eIWDLrTgklL~tl~ 1714 (1922)
+ .++|...|++|+-++ +|.++.|+.+++.+.
T Consensus 278 ~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 278 VGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILG 314 (558)
T ss_pred ccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEec
Confidence 2 678999999999888 799999998888765
No 323
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=96.47 E-value=0.0022 Score=82.31 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=8.3
Q ss_pred cchhHHHHHhhhcccCC
Q 000177 905 EIIQPALNVLINLVCPP 921 (1922)
Q Consensus 905 ev~~~AL~Vl~ncVc~P 921 (1922)
+|..-||.+|.+|.|.-
T Consensus 319 ~vk~raL~ti~~lL~~k 335 (988)
T KOG2038|consen 319 EVKKRALKTIYDLLTNK 335 (988)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 34444555555555543
No 324
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=96.40 E-value=0.0053 Score=70.59 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=11.1
Q ss_pred eEEEEEecCCCCCCCC
Q 000177 1804 SARIYEIGRRRPTEDD 1819 (1922)
Q Consensus 1804 sVRLyEVGr~r~~EDD 1819 (1922)
++|.+..||+...+++
T Consensus 228 StR~hkyGRQ~~~~~~ 243 (314)
T PF06524_consen 228 STRSHKYGRQGQADED 243 (314)
T ss_pred eeecchhccccCCCcC
Confidence 4677888888765544
No 325
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.36 E-value=0.011 Score=75.68 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=77.8
Q ss_pred EEEEEEcCCC---CEEEEEeCCCcEEEEECCCC---CceeeeccCCCCeeEEEeeecCCCc-EEEEec-CCcEEEeccCC
Q 000177 1512 LTCITFLGDS---SHIAVGSHTKELKIFDSNSS---SPLESCTSHQAPVTLVQSHLSGETQ-LLLSSS-SQDVHLWNASS 1583 (1922)
Q Consensus 1512 Vt~LaFSPDG---~lLASGS~DGtIkIWDl~tg---k~l~tL~gHss~VtsLq~afSpDG~-lLaSSs-DgtVkLWDl~t 1583 (1922)
|-.+.|+|.. .++++-+... -.||++... .....+.||+.+|+.+ .|+|... ++++++ |..|..||+++
T Consensus 70 vad~qws~h~a~~~wiVsts~qk-aiiwnlA~ss~~aIef~lhghsraitd~--n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQK-AIIWNLAKSSSNAIEFVLHGHSRAITDI--NFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred hcceecccCCCCceeEEecCcch-hhhhhhhcCCccceEEEEecCccceecc--ccCCCCCcceeeccccccceeeeccC
Confidence 5566777633 2444444444 458988533 3445668999999999 8888765 555665 99999999998
Q ss_pred CCCCcceEecc----ceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCc-eeeeec
Q 000177 1584 IAGGPMHSFEG----CKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQ-LEAKLS 1634 (1922)
Q Consensus 1584 ~~gk~l~tf~g----h~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~ 1634 (1922)
+ ..++..+.. ...|.|+- ++..+++ +..+.|.+||.+.|. .+.+++
T Consensus 147 p-~~p~ys~~~w~s~asqVkwnyk~p~vlas----shg~~i~vwd~r~gs~pl~s~K 198 (1081)
T KOG0309|consen 147 P-HRPFYSTSSWRSAASQVKWNYKDPNVLAS----SHGNDIFVWDLRKGSTPLCSLK 198 (1081)
T ss_pred C-CcceeeeecccccCceeeecccCcchhhh----ccCCceEEEeccCCCcceEEec
Confidence 4 445555543 36689987 5666665 556779999999765 344444
No 326
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.35 E-value=0.31 Score=62.24 Aligned_cols=161 Identities=13% Similarity=0.155 Sum_probs=89.8
Q ss_pred CCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1550 HQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1550 Hss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
.......+ +++|+|++++.+.||.-.|+.... .+ -..+......+|.+.++ +++- ...++|.|+.--+...
T Consensus 31 ~~~~p~~l--s~npngr~v~V~g~geY~iyt~~~--~r-~k~~G~g~~~vw~~~n~-yAv~---~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 31 CEIYPQSL--SHNPNGRFVLVCGDGEYEIYTALA--WR-NKAFGSGLSFVWSSRNR-YAVL---ESSSTIKIYKNFKNEV 101 (443)
T ss_dssp -SS--SEE--EE-TTSSEEEEEETTEEEEEETTT--TE-EEEEEE-SEEEE-TSSE-EEEE----TTS-EEEEETTEE-T
T ss_pred CCcCCeeE--EECCCCCEEEEEcCCEEEEEEccC--Cc-ccccCceeEEEEecCcc-EEEE---ECCCeEEEEEcCcccc
Confidence 44556788 899999999999999988888543 22 22333347788999555 5554 4478899974333333
Q ss_pred eeeeccccccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeE----E
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSE----V 1701 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSe----I 1701 (1922)
..++. ..+....+-. |.+|...+ .+||+.+++.+++++... .-.+.|+++|.+++..++ |
T Consensus 102 ~k~i~--------~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 102 VKSIK--------LPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp T-------------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEE
T ss_pred ceEEc--------CCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEE
Confidence 23343 1122221222 77777555 899999999999997542 238999999999999884 4
Q ss_pred Ee--cC------------CCeEEEEEcCCCceeEEEccCCCEEEEE
Q 000177 1702 WD--LR------------KFRLLRSVPSLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1702 WD--Lr------------TgklL~tl~gH~~~sVaFSPdG~~LaSg 1733 (1922)
++ .. ....+..+. -...+..|..+ -+||+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~~-~~IkSg~W~~d-~fiYtT 213 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEIS-ERIKSGCWVED-CFIYTT 213 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT-EEEEE-
T ss_pred EEecchhcccccccCchhceEEEEEec-ceeEEEEEEcC-EEEEEc
Confidence 44 33 334444432 22368888877 666665
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.32 E-value=0.1 Score=67.52 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=77.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~ 1588 (1922)
..|.--+++..+++|+.|+.-|.+.+|+-..++....-.+-...++++. ..|++..+++.+. .+.|.++-++.. ..+
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~-~vs~~e~lvAagt~~g~V~v~ql~~~-~p~ 111 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVR-SVSSVEYLVAAGTASGRVSVFQLNKE-LPR 111 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEE-EecchhHhhhhhcCCceEEeehhhcc-CCC
Confidence 4455555667799999999999999999876654432222233333332 6788888888865 778888888761 111
Q ss_pred ce----Eec-----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCC
Q 000177 1589 MH----SFE-----GCKAARFSNSGNLFAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1589 l~----tf~-----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT 1626 (1922)
-. .+. .+++++|++++..+++| ...|+|.+--+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysG---D~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSG---DSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeec---CCCceEEEEEech
Confidence 11 111 14899999999999998 7778888877776
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.28 E-value=0.011 Score=75.03 Aligned_cols=73 Identities=10% Similarity=0.223 Sum_probs=60.0
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASS 1583 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t 1583 (1922)
.+. +.|.|++++|+.+.|+.|..||+|.+||..++... +..+.-..+.+ +|+|+|.+++.|+ -|.+.+||+.-
T Consensus 257 pL~-s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~i--aWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLP-SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLI--AWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecC-CcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEE--EEcCCCcEEEEEcCCceEEEEEeec
Confidence 355 78999999999999999999999999998766333 32334456777 8999999999976 69999999975
No 329
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.16 E-value=1.5 Score=54.89 Aligned_cols=207 Identities=13% Similarity=0.146 Sum_probs=98.7
Q ss_pred EEcCCCCEEEEEe-CCC--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceE
Q 000177 1516 TFLGDSSHIAVGS-HTK--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1516 aFSPDG~lLASGS-~DG--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~t 1591 (1922)
+|.+||+.|+-++ .|| .+.+.|+.+++..+--.+-....... ..+++++.++- ....+|+-.|+.+...+.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~--~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGG--FLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT---EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccce--EEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 5788997655544 455 56667888877654333222222233 45677777765 556788888888743334555
Q ss_pred eccce--eEEEc--CCCCEEEEeecCC-------------------CCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1592 FEGCK--AARFS--NSGNLFAALPTET-------------------SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1592 f~gh~--sVaFS--PDG~~LaSgS~~S-------------------~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
+...+ +..|. .++..++..-... ....|.-.|+.+|+....+.++ .-..
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~--------~wlg 191 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT--------DWLG 191 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES--------S-EE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC--------cccc
Confidence 54432 34554 3556554431101 2345666788888776655421 2222
Q ss_pred EEEEcCCCCeEeec-c---------EEEEcCC-CcceeeeccCCCce---EEEEecCCCEEEEEe------E----EEec
Q 000177 1649 QIHFSPSDTMLLWN-G---------ILWDRRN-SVPVHRFDQFTDHG---GGGFHPAGNEVIINS------E----VWDL 1704 (1922)
Q Consensus 1649 vVaFSPdG~lLaSg-g---------rLWDlrt-gk~I~kf~gh~~~V---sVaFSPdG~~LASGS------e----IWDL 1704 (1922)
-+.|+|.+..++.= - +||-+++ |..++++..+.... -=.|.|+|..|.--+ . -.|+
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 37788877655532 2 8999885 44444444443322 337889998776544 1 2466
Q ss_pred CCCeEEEEEcCCCceeEEEccCCCEEEE
Q 000177 1705 RKFRLLRSVPSLDQTTITFNARGDVIYA 1732 (1922)
Q Consensus 1705 rTgklL~tl~gH~~~sVaFSPdG~~LaS 1732 (1922)
.|++............+.-|++|++++.
T Consensus 272 ~t~~~~~~~~~p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 272 DTGERRRLMEMPWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp TT--EEEEEEE-SEEEEEE-TTSSEEEE
T ss_pred CCCCceEEEeCCceeeeEEcCCCCEEEe
Confidence 6664432222212234555788888775
No 330
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.03 E-value=0.58 Score=57.87 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=55.2
Q ss_pred cCCCcEEEE----------ecCCcEEEeccCCCCCCcce--Ee-ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1562 SGETQLLLS----------SSSQDVHLWNASSIAGGPMH--SF-EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1562 SpDG~lLaS----------SsDgtVkLWDl~t~~gk~l~--tf-~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
|||+++++. +..+.+.|||+.+ ++... .. .......|+|+|+.++.. .++.|.+++..++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~~~~~l~~~~~~~~~~~~sP~g~~~~~v----~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET--GEITPLTPPPPKLQDAKWSPDGKYIAFV----RDNNLYLRDLATGQ 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT--TEEEESS-EETTBSEEEE-SSSTEEEEE----ETTEEEEESSTTSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC--CceEECcCCccccccceeecCCCeeEEE----ecCceEEEECCCCC
Confidence 577877766 2355688999987 33222 11 124778999999999996 45789999998875
Q ss_pred eeeeeccccccccCCCC-----------cceEEEEcCCCCeEee
Q 000177 1629 LEAKLSDTSVNLTGRGH-----------AYSQIHFSPSDTMLLW 1661 (1922)
Q Consensus 1629 ~i~tL~d~s~~~~~~gh-----------~~~vVaFSPdG~lLaS 1661 (1922)
..+.-.+.. .....|- ....+.|||||++|+.
T Consensus 75 ~~~lT~dg~-~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~ 117 (353)
T PF00930_consen 75 ETQLTTDGE-PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF 117 (353)
T ss_dssp EEESES--T-TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred eEEeccccc-eeEEcCccceeccccccccccceEECCCCCEEEE
Confidence 443222110 0000011 1223899999998884
No 331
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.00 E-value=0.061 Score=70.80 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=103.4
Q ss_pred eecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe--
Q 000177 1494 VYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-- 1571 (1922)
Q Consensus 1494 i~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-- 1571 (1922)
...+.+..++..--. +.|+-++. +++++.+|...|+|.+-|..+.+.+.++.+|++.|..+ +-.|++|++|
T Consensus 163 Dl~~~~e~r~~~v~a-~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf----Dv~GNlLitCG~ 235 (1118)
T KOG1275|consen 163 DLNTEKETRTTNVSA-SGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF----DVQGNLLITCGY 235 (1118)
T ss_pred ecccceeeeeeeccC-CceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee----eccCCeEEEeec
Confidence 344455555443333 45666554 58899999999999999999999999999999999887 3477888884
Q ss_pred --------cCCcEEEeccCCCCCCcce---EeccceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCC-ce-eeeecccc
Q 000177 1572 --------SSQDVHLWNASSIAGGPMH---SFEGCKAARFSNS-GNLFAALPTETSDRGILLYDIQTY-QL-EAKLSDTS 1637 (1922)
Q Consensus 1572 --------sDgtVkLWDl~t~~gk~l~---tf~gh~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTg-k~-i~tL~d~s 1637 (1922)
.|.-|+|||++. -+.+. .-.+-.-+.|+|. ...++.+ +.-|...+-|..+- .. ...+.
T Consensus 236 S~R~~~l~~D~FvkVYDLRm--mral~PI~~~~~P~flrf~Psl~t~~~V~---S~sGq~q~vd~~~lsNP~~~~~~--- 307 (1118)
T KOG1275|consen 236 SMRRYNLAMDPFVKVYDLRM--MRALSPIQFPYGPQFLRFHPSLTTRLAVT---SQSGQFQFVDTATLSNPPAGVKM--- 307 (1118)
T ss_pred ccccccccccchhhhhhhhh--hhccCCcccccCchhhhhcccccceEEEE---ecccceeeccccccCCCccceeE---
Confidence 266799999987 22222 2223355788985 4556666 56678888884321 11 11110
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc-----EEEE
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWD 1667 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWD 1667 (1922)
.+ ..+.....+.++++++.++.+. .+|-
T Consensus 308 v~--p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 308 VN--PNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred Ec--cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 00 0122244588999999888655 7887
No 332
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.91 E-value=0.8 Score=62.74 Aligned_cols=231 Identities=14% Similarity=0.197 Sum_probs=118.3
Q ss_pred CCeeEEEeeecCCC-cEEEEecCCcEEEeccCCCCCCcceEe-ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1552 APVTLVQSHLSGET-QLLLSSSSQDVHLWNASSIAGGPMHSF-EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1552 s~VtsLq~afSpDG-~lLaSSsDgtVkLWDl~t~~gk~l~tf-~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
..|.++ .|..++ .+++....|.|.+-|..+.....+... .|+.+++|+||++.++.. +.++++.+ ...+..+
T Consensus 69 ~~i~s~--~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~li---T~~~tll~-mT~~f~~ 142 (1265)
T KOG1920|consen 69 DEIVSV--QFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALI---TGRQTLLF-MTKDFEP 142 (1265)
T ss_pred cceEEE--EEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEE---eCCcEEEE-Eeccccc
Confidence 578888 455554 455556789999888887333333333 357899999999998887 55565544 3222222
Q ss_pred eeeeccccccccCCCCcc-eEEEEcCCCCeE-eecc--EEEEcCCC-cceeeeccCCCceEEEEecCCCEEEEEe-----
Q 000177 1630 EAKLSDTSVNLTGRGHAY-SQIHFSPSDTML-LWNG--ILWDRRNS-VPVHRFDQFTDHGGGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~-~vVaFSPdG~lL-aSgg--rLWDlrtg-k~I~kf~gh~~~VsVaFSPdG~~LASGS----- 1699 (1922)
+..-+ +......... ..+-|-.....+ -++| ...+.... +.+.....+...+++.|--||+++++..
T Consensus 143 i~E~~---L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 143 IAEKP---LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred hhccc---cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 11110 0000000000 002222211111 1111 11110000 0111112344455899999999999965
Q ss_pred -----EEEecCCCeEEEEEcC--CCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc---ee
Q 000177 1700 -----EVWDLRKFRLLRSVPS--LDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS---DI 1769 (1922)
Q Consensus 1700 -----eIWDLrTgklL~tl~g--H~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys---~I 1769 (1922)
+|||-. |.+-.+-.. ....+++|-|.|..|++......++ .+.+|+..... -.
T Consensus 220 ~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~----------------~IvffErNGL~hg~f~ 282 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS----------------DIVFFERNGLRHGEFV 282 (1265)
T ss_pred CceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCC----------------cEEEEecCCccccccc
Confidence 488876 443222111 1126999999999999884332221 12222211110 00
Q ss_pred eeeccCC-ceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1770 ATIPVDR-CVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1770 aTidvkr-~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
....... .+..++|+.++..+|++.... ..+.+++|-+|
T Consensus 283 l~~p~de~~ve~L~Wns~sdiLAv~~~~~---e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 283 LPFPLDEKEVEELAWNSNSDILAVVTSNL---ENSLVQLWTTG 322 (1265)
T ss_pred cCCcccccchheeeecCCCCceeeeeccc---ccceEEEEEec
Confidence 1111122 288999999999999874222 22447777665
No 333
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=95.83 E-value=0.17 Score=65.84 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=84.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC--------C-CcEEEE-ec-CCcEEE
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG--------E-TQLLLS-SS-SQDVHL 1578 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp--------D-G~lLaS-Ss-DgtVkL 1578 (1922)
....++.|+|.| +||-|+.. .|.+-|..+.+.+.++.-|...|+.|.|+.-| . .+++++ ++ .|.|.|
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 446788999877 66777654 68888999999999999999999999664222 1 344444 44 789999
Q ss_pred eccCCCCCCcceEeccc----eeEEEcC---CC-CEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1579 WNASSIAGGPMHSFEGC----KAARFSN---SG-NLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~gh----~sVaFSP---DG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
||+.. +..+..++.+ ..++|-+ +. ..+++- ..-.++.+|+..+|+......
T Consensus 94 ~d~~~--~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI---h~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 94 VDFVL--ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI---HGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred EEehh--hhhhhhhcCCCcchhheeeeeccCcchheeEEe---cCCcEEEEEEccCCceeeccc
Confidence 99987 5555555443 4466655 34 345554 556889999999999877654
No 334
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.021 Score=70.16 Aligned_cols=195 Identities=12% Similarity=0.117 Sum_probs=122.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--C-CceeeeccCCCCeeEEEeeecCCCcEEEE-ec-CCcEEEecc
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS--S-SPLESCTSHQAPVTLVQSHLSGETQLLLS-SS-SQDVHLWNA 1581 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t--g-k~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss-DgtVkLWDl 1581 (1922)
|. +.|+.|..+ -.+++++++.||.+|.|.-.. | +.+..+.+|-..|.++ +.+-++.++.| +. |..++++|+
T Consensus 8 hr-d~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl--~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HR-DVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSL--AVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cc-ceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhh--hccccceeEeeccCcccceeEEEe
Confidence 66 667766544 457999999999999998533 2 2344567899999999 77889999988 66 899999999
Q ss_pred CCCCCCcceEecc---ceeEEEcCC-C---CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC
Q 000177 1582 SSIAGGPMHSFEG---CKAARFSNS-G---NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1582 ~t~~gk~l~tf~g---h~sVaFSPD-G---~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
.+ ...+.-++- -..+.|... | ..++.. .-.++.+.++|-....+...+.+ ..+-.++.++.++|
T Consensus 84 En--~DminmiKL~~lPg~a~wv~skGd~~s~IAVs--~~~sg~i~VvD~~~d~~q~~~fk-----klH~sPV~~i~y~q 154 (558)
T KOG0882|consen 84 EN--FDMINMIKLVDLPGFAEWVTSKGDKISLIAVS--LFKSGKIFVVDGFGDFCQDGYFK-----KLHFSPVKKIRYNQ 154 (558)
T ss_pred ec--cchhhhcccccCCCceEEecCCCCeeeeEEee--cccCCCcEEECCcCCcCccceec-----ccccCceEEEEeec
Confidence 87 222221111 123334332 2 134433 24678999999876554322210 11122333477788
Q ss_pred CCCeEeecc-----EEEEcCC---------------CcceeeeccCCCc-eEEEEecCCCEEEEEe-----EEEecCCCe
Q 000177 1655 SDTMLLWNG-----ILWDRRN---------------SVPVHRFDQFTDH-GGGGFHPAGNEVIINS-----EVWDLRKFR 1708 (1922)
Q Consensus 1655 dG~lLaSgg-----rLWDlrt---------------gk~I~kf~gh~~~-VsVaFSPdG~~LASGS-----eIWDLrTgk 1708 (1922)
.+..+++.. .-|...- -.-+.-|...... .++.|+|+|..+.+-+ +++++++++
T Consensus 155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 877777554 5676551 1112222222222 3899999999998877 488888888
Q ss_pred EEEEEc
Q 000177 1709 LLRSVP 1714 (1922)
Q Consensus 1709 lL~tl~ 1714 (1922)
+++.+.
T Consensus 235 lvqeiD 240 (558)
T KOG0882|consen 235 LVQEID 240 (558)
T ss_pred hhhhhh
Confidence 766543
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.66 E-value=0.083 Score=67.52 Aligned_cols=111 Identities=12% Similarity=0.127 Sum_probs=75.2
Q ss_pred EEEEEEcC-CCCEEEE----EeCCCcE----EEEECCCCCcee---eeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEE
Q 000177 1512 LTCITFLG-DSSHIAV----GSHTKEL----KIFDSNSSSPLE---SCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHL 1578 (1922)
Q Consensus 1512 Vt~LaFSP-DG~lLAS----GS~DGtI----kIWDl~tgk~l~---tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkL 1578 (1922)
..++.||. ++..+.| .+.+|.+ .+|++..++... +--.+...|.++ +++|+...++. |.||+|.+
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~c--a~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICC--ARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEE--ecCcccceEEEEecCCeEEE
Confidence 46777876 4444443 2334443 567776554322 113567788888 88998777666 67999999
Q ss_pred eccCCCCCCcceEecc--ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1579 WNASSIAGGPMHSFEG--CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~g--h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
||... +.....-.. .+.++|||+|..|++| +..|.+.+||+.-...
T Consensus 286 yD~~~--~~t~~~ka~~~P~~iaWHp~gai~~V~---s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 286 YDTTR--GVTLLAKAEFIPTLIAWHPDGAIFVVG---SEQGELQCFDMALSPI 333 (545)
T ss_pred EEcCC--CeeeeeeecccceEEEEcCCCcEEEEE---cCCceEEEEEeecCcc
Confidence 99976 221111111 3789999999999999 8889999999975443
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.65 E-value=0.63 Score=55.26 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=69.8
Q ss_pred EecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccC-CCCeeEEEeeecCCCcEEEEec-CCcEEEe
Q 000177 1503 TCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSH-QAPVTLVQSHLSGETQLLLSSS-SQDVHLW 1579 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gH-ss~VtsLq~afSpDG~lLaSSs-DgtVkLW 1579 (1922)
.+.+-. ..+..++|+|+.+ ++++....+.|..++. +|+.++++.-. .+..-.| .+..++.++++.. ++.+.++
T Consensus 16 ~l~g~~-~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI--~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGIL-DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGI--TYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT---S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEE--EE-STTEEEEEETTTTEEEEE
T ss_pred ECCCcc-CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeE--EEECCCEEEEEEcCCCcEEEE
Confidence 455644 5699999999755 6677778888988887 58888776332 3456777 6778889998875 8899999
Q ss_pred ccCCCCCCc-c---eEec---------cceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1580 NASSIAGGP-M---HSFE---------GCKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1580 Dl~t~~gk~-l---~tf~---------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
++....... . ..+. +.-.++|.|.++.|+.+ ....-..||.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~---kE~~P~~l~~~~ 147 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA---KERKPKRLYEVN 147 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE---EESSSEEEEEEE
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE---eCCCChhhEEEc
Confidence 884411111 1 1121 12568999987777766 333444555554
No 337
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.95 Score=53.99 Aligned_cols=203 Identities=14% Similarity=0.162 Sum_probs=115.3
Q ss_pred EEEcCC-CCEEEEEeCCCc-EEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec------CCcEEEeccCCCCC
Q 000177 1515 ITFLGD-SSHIAVGSHTKE-LKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS------SQDVHLWNASSIAG 1586 (1922)
Q Consensus 1515 LaFSPD-G~lLASGS~DGt-IkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs------DgtVkLWDl~t~~g 1586 (1922)
++|+|. ..-++.+-.-|+ ..+||.+..+...++...++.-+.=.-.||+||.+|.... -|.|-|||.+.. .
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~-f 151 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG-F 151 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc-c
Confidence 778873 445666666665 4789988877665542222111111116899999998752 356999999852 3
Q ss_pred CcceEeccc----eeEEEcCCCCEEEEeecC---------------CCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1587 GPMHSFEGC----KAARFSNSGNLFAALPTE---------------TSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1587 k~l~tf~gh----~sVaFSPDG~~LaSgS~~---------------S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
+.+..|..| +.+.|.+||+.++.+..+ +..-.+.+.|..+|+.+.+..-+ ...+..+.
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp---~~l~~lSi 228 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP---ASLRQLSI 228 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc---hhhhhcce
Confidence 345556544 789999999998887221 01223455565566655443211 00011222
Q ss_pred eEEEEcCCCCeEeecc----------EEEEcCCCcceeeecc-------CCCce-EEEEecCCCEEEEEe------EEEe
Q 000177 1648 SQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFDQ-------FTDHG-GGGFHPAGNEVIINS------EVWD 1703 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~g-------h~~~V-sVaFSPdG~~LASGS------eIWD 1703 (1922)
.-+...++|..++.+- .+=-.+.++++.-++. ..+.+ +++.+-+..+++..+ -+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 2377788887766443 1222234455444432 23445 666665555555555 2999
Q ss_pred cCCCeEEEEEcCCCceeE
Q 000177 1704 LRKFRLLRSVPSLDQTTI 1721 (1922)
Q Consensus 1704 LrTgklL~tl~gH~~~sV 1721 (1922)
..||.++....-.+...|
T Consensus 309 a~tG~vv~~a~l~daaGv 326 (366)
T COG3490 309 AATGAVVSEAALPDAAGV 326 (366)
T ss_pred cCCCcEEecccccccccc
Confidence 999998876553333333
No 338
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.23 E-value=5.6 Score=46.96 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=90.4
Q ss_pred CCCEEEEEeCCCcEEEEECC-CCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcce--------
Q 000177 1520 DSSHIAVGSHTKELKIFDSN-SSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMH-------- 1590 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~-tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~-------- 1590 (1922)
.++.|+.|+.+| |.++++. ......... ...|..+ ...++-+.|+.=+|+.+.++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql--~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQL--SVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEE--EEecccCEEEEEcCCccEEEEchhhcccccccccccccc
Confidence 578999999999 8999983 333333332 3348888 6677777888767799999998762111100
Q ss_pred -----Eeccc-eeEEEc----CC-CCEEEEeecCCCCCeEEEEECCCC-----ceeeeeccccccccCCCCcceEEEEcC
Q 000177 1591 -----SFEGC-KAARFS----NS-GNLFAALPTETSDRGILLYDIQTY-----QLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1591 -----tf~gh-~sVaFS----PD-G~~LaSgS~~S~DgtIrIWDlrTg-----k~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
.+... .+..|. .. ..+++.+ ..++|.+|..... +..+.+. .......++|.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va----~kk~i~i~~~~~~~~~f~~~~ke~~--------lp~~~~~i~~~- 147 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA----VKKKILIYEWNDPRNSFSKLLKEIS--------LPDPPSSIAFL- 147 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE----ECCEEEEEEEECCcccccceeEEEE--------cCCCcEEEEEe-
Confidence 11111 122233 22 3344443 3458999888753 2333333 12333447777
Q ss_pred CCCeEeec-c---EEEEcCCCcceeeeccCC------------CceEEEEecCCCEEEEEeE
Q 000177 1655 SDTMLLWN-G---ILWDRRNSVPVHRFDQFT------------DHGGGGFHPAGNEVIINSE 1700 (1922)
Q Consensus 1655 dG~lLaSg-g---rLWDlrtgk~I~kf~gh~------------~~VsVaFSPdG~~LASGSe 1700 (1922)
++.++.+ . .+.|+.++....-+.... ..+.+.--+++.+|++..+
T Consensus 148 -~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~ 208 (275)
T PF00780_consen 148 -GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDN 208 (275)
T ss_pred -CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecc
Confidence 3344433 2 788988776543332111 1234444555677776553
No 339
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.19 E-value=3.7 Score=51.43 Aligned_cols=107 Identities=13% Similarity=0.090 Sum_probs=70.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCC--C--------Cee-EEEeeecCCCcEEEEecCCcEEEeccCCCCCCc
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQ--A--------PVT-LVQSHLSGETQLLLSSSSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHs--s--------~Vt-sLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~ 1588 (1922)
.+..|++++.+|.|.-+|..+|+.+-...-.. . .+. .+ .. .++++++.+.++.+.-+|..+ ++.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~--~v-~~~~v~v~~~~g~l~ald~~t--G~~ 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGV--TV-AGGKVYIGSEKGQVYALNAED--GEV 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCccccccccccccccccc--EE-ECCEEEEEcCCCEEEEEECCC--CCC
Confidence 36688888888999999999998775543211 0 000 01 11 145666667789999999988 777
Q ss_pred ceEeccceeEEEcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1589 MHSFEGCKAARFSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1589 l~tf~gh~sVaFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
+.++.....+.-+| .+..++.+ ..++.+..+|..+|+.+..+.
T Consensus 143 ~W~~~~~~~~~ssP~v~~~~v~v~---~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 143 AWQTKVAGEALSRPVVSDGLVLVH---TSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred cccccCCCceecCCEEECCEEEEE---CCCCEEEEEEccCCCEeeeec
Confidence 76664322111122 24455555 668899999999999988775
No 340
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=95.11 E-value=0.033 Score=44.85 Aligned_cols=31 Identities=42% Similarity=0.375 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHhcCchHHHHHHHHHcCC
Q 000177 1167 HSRELLLLIHEHLQASGLVTTAAQLLKEAQL 1197 (1922)
Q Consensus 1167 ~e~ELL~LI~~HL~~~GL~~TA~~L~kEA~L 1197 (1922)
..++|.+||.+||...|+.+||.+|.+|+++
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~ 32 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCC
Confidence 3578999999999999999999999999998
No 341
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.11 E-value=4.7 Score=50.71 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=70.8
Q ss_pred EEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEE-ec-----------C
Q 000177 1512 LTCITFLGDSSHIAVG-SHTK----ELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLS-SS-----------S 1573 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASG-S~DG----tIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaS-Ss-----------D 1573 (1922)
+....+||||++|+.+ +..| +|+|+|+.+|+.+... .. .. -..+ .|.++++.|+. .. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~-~~~~--~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PK-FSSV--SWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EE-SEEE--EECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cc-cceE--EEeCCCCEEEEEEeCcccccccCCCC
Confidence 3467899999988765 4444 5999999999765432 21 11 1226 78999877655 32 2
Q ss_pred CcEEEeccCCCCCCcceEecc------ceeEEEcCCCCEEEEeecCCCC-CeEEEEECCCC
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG------CKAARFSNSGNLFAALPTETSD-RGILLYDIQTY 1627 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g------h~sVaFSPDG~~LaSgS~~S~D-gtIrIWDlrTg 1627 (1922)
..|+.|.+.+....-...|.+ ...+..++++++++..+..+.+ ..+.+.|+..+
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 237888887622221233432 2367889999988766555555 77888898875
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.04 E-value=1.9 Score=53.10 Aligned_cols=235 Identities=15% Similarity=0.215 Sum_probs=125.7
Q ss_pred EEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceeee--c-cCCCC----eeEEEeeecCCCcEEEEe--c-
Q 000177 1513 TCITFLGDSSHIAVGS----------HTKELKIFDSNSSSPLESC--T-SHQAP----VTLVQSHLSGETQLLLSS--S- 1572 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS----------~DGtIkIWDl~tgk~l~tL--~-gHss~----VtsLq~afSpDG~lLaSS--s- 1572 (1922)
-.+..+||++.+++.+ .+-.|.+||..+-.....+ . .|... .+.+ .++.|+++++.. +
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~--~ls~dgk~~~V~N~TP 116 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMF--ALSADGKFLYVQNFTP 116 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGE--EE-TTSSEEEEEEESS
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccce--EEccCCcEEEEEccCC
Confidence 4467899999888743 4556999999988766533 2 21211 1223 568899988774 2
Q ss_pred CCcEEEeccCCCCCCcceEeccceeEEEcCC-CCEEEEeecCCCCCeEEEEECC-CCceeeeeccccccccCCCCcceEE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGCKAARFSNS-GNLFAALPTETSDRGILLYDIQ-TYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlr-Tgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
-..|.|-|+.. .+.+..+.---|.-.-|. .+.|.+- +.||++..+.+. .|+...+... .... -...-...-
T Consensus 117 a~SVtVVDl~~--~kvv~ei~~PGC~~iyP~~~~~F~~l---C~DGsl~~v~Ld~~Gk~~~~~t~-~F~~-~~dp~f~~~ 189 (342)
T PF06433_consen 117 ATSVTVVDLAA--KKVVGEIDTPGCWLIYPSGNRGFSML---CGDGSLLTVTLDADGKEAQKSTK-VFDP-DDDPLFEHP 189 (342)
T ss_dssp SEEEEEEETTT--TEEEEEEEGTSEEEEEEEETTEEEEE---ETTSCEEEEEETSTSSEEEEEEE-ESST-TTS-B-S--
T ss_pred CCeEEEEECCC--CceeeeecCCCEEEEEecCCCceEEE---ecCCceEEEEECCCCCEeEeecc-ccCC-CCccccccc
Confidence 66789999987 666665543233333342 2345555 568888888887 4555433221 0000 000000112
Q ss_pred EEcCCC-CeEe-e-ccEEEEcC--CCc--ceeeeccC------CCce-----EEEEecCCCEEEEEe-------------
Q 000177 1651 HFSPSD-TMLL-W-NGILWDRR--NSV--PVHRFDQF------TDHG-----GGGFHPAGNEVIINS------------- 1699 (1922)
Q Consensus 1651 aFSPdG-~lLa-S-ggrLWDlr--tgk--~I~kf~gh------~~~V-----sVaFSPdG~~LASGS------------- 1699 (1922)
.+...+ .+++ | .|.+|.+. ... ....+.-. .+|. -+++|+..+.|.+--
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 333333 3332 2 22555433 111 12222211 1222 578887655544432
Q ss_pred EEE--ecCCCeEEEEEc-CCCceeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc
Q 000177 1700 EVW--DLRKFRLLRSVP-SLDQTTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV 1774 (1922)
Q Consensus 1700 eIW--DLrTgklL~tl~-gH~~~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv 1774 (1922)
+|| |+.+++.+.+++ .+...+|..+.+.+ .|++... ....+.++|+.+.+.+.+++.
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~------------------~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA------------------GDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET------------------TTTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC------------------CCCeEEEEeCcCCcEEeehhc
Confidence 355 888999999998 44557899998776 6666532 124577888888877776653
No 343
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.01 E-value=1.7 Score=53.49 Aligned_cols=197 Identities=12% Similarity=0.120 Sum_probs=114.4
Q ss_pred EEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcce
Q 000177 1513 TCITFLGDSSHIAVGSH--TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~--DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~ 1590 (1922)
+..++|.||++++.... -.+|-|-|+..++.+..+. ...+..+ ..+++..+..-|.||++.-..+.. .|+...
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PGC~~i--yP~~~~~F~~lC~DGsl~~v~Ld~-~Gk~~~ 172 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--TPGCWLI--YPSGNRGFSMLCGDGSLLTVTLDA-DGKEAQ 172 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--GTSEEEE--EEEETTEEEEEETTSCEEEEEETS-TSSEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--CCCEEEE--EecCCCceEEEecCCceEEEEECC-CCCEeE
Confidence 34678899998877654 4578999999888887775 3445555 445555666669999998888875 255543
Q ss_pred Eeccc---------eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc------eEEEEcCC
Q 000177 1591 SFEGC---------KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY------SQIHFSPS 1655 (1922)
Q Consensus 1591 tf~gh---------~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~------~vVaFSPd 1655 (1922)
+.... ..-++...+..++.. +..|.|+--|+........-+ -.+......... ..+++++.
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~---Sy~G~v~~~dlsg~~~~~~~~-~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFV---SYEGNVYSADLSGDSAKFGKP-WSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEE---BTTSEEEEEEETTSSEEEEEE-EESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred eeccccCCCCcccccccceECCCCeEEEE---ecCCEEEEEeccCCcccccCc-ccccCccccccCcCCcceeeeeeccc
Confidence 32211 122333344444444 677888888887554222111 000000000011 12888865
Q ss_pred CCeEee-c---c-----------EEEEcCCCcceeeeccCCCceEEEEecCCC-EEEEEe------EEEecCCCeEEEEE
Q 000177 1656 DTMLLW-N---G-----------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGN-EVIINS------EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1656 G~lLaS-g---g-----------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~-~LASGS------eIWDLrTgklL~tl 1713 (1922)
.+.|.. - . -+||+.+++.+.++.......++..+.+.+ .|+..+ .+||..+|++++++
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 544331 1 1 567888999999997543333888888876 444332 48999999999999
Q ss_pred cCCCc
Q 000177 1714 PSLDQ 1718 (1922)
Q Consensus 1714 ~gH~~ 1718 (1922)
.....
T Consensus 329 ~~lG~ 333 (342)
T PF06433_consen 329 EQLGE 333 (342)
T ss_dssp ---SS
T ss_pred hccCC
Confidence 85443
No 344
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.00 E-value=0.05 Score=63.41 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=60.1
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcE-EEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcC-C
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQL-LLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSN-S 1603 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~l-LaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSP-D 1603 (1922)
+..++|+++..+.+..-.--...|+++ +-+|..+. +++| .||.+-|||++.. ..+...++.| +-+-||| +
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l--~~hp~qq~~v~cgt~dg~~~l~d~rn~-~~p~S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTAL--CSHPAQQHLVCCGTDDGIVGLWDARNV-AMPVSLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred cceeeecccccccccccccccccchhh--hCCcccccEEEEecCCCeEEEEEcccc-cchHHHHHHhhhhhhheeccCCC
Confidence 456677776544332222223348888 56665544 4444 5999999999873 2333344443 7799999 6
Q ss_pred CCEEEEeecCCCCCeEEEEECCC
Q 000177 1604 GNLFAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1604 G~~LaSgS~~S~DgtIrIWDlrT 1626 (1922)
+..|+++ +.||.+..||..+
T Consensus 236 p~~Lft~---sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 PEHLFTC---SEDGSLWHWDAST 255 (319)
T ss_pred chheeEe---cCCCcEEEEcCCC
Confidence 7889998 8999999999875
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=11 Score=47.36 Aligned_cols=211 Identities=14% Similarity=0.179 Sum_probs=126.4
Q ss_pred EEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE--ecCCcEEEeccCCCCCCc
Q 000177 1512 LTCITFLGDSSHIAVGS-HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS--SSSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS-~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS--SsDgtVkLWDl~t~~gk~ 1588 (1922)
...+...+++..+.... ....+.+.+............-...-..+ ..++.+..+.. ..+..|.+.|..+ ...
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i--~v~~~~~~vyv~~~~~~~v~vid~~~--~~~ 108 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGV--AVNPAGNKVYVTTGDSNTVSVIDTAT--NTV 108 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccce--eeCCCCCeEEEecCCCCeEEEEcCcc--cce
Confidence 34567778775443332 22245555544211111111111222344 56677764443 3478999999766 444
Q ss_pred ceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ecc-
Q 000177 1589 MHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG- 1663 (1922)
Q Consensus 1589 l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg- 1663 (1922)
.+... .-..++|+|+++.+..+..+..++++.+.|..+.+.+.+.. .+....-++++|+|+.+. +..
T Consensus 109 ~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~--------vG~~P~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 109 LGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP--------VGNTPTGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred eeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe--------cCCCcceEEECCCCCeEEEEecC
Confidence 44332 23779999999888777322247899999999999888754 122224599999999555 332
Q ss_pred ----EEEEcCCCccee-----eeccCCCceEEEEecCCCEEEEEe------E--EEecCCCeEEEE-EcCC--CceeEEE
Q 000177 1664 ----ILWDRRNSVPVH-----RFDQFTDHGGGGFHPAGNEVIINS------E--VWDLRKFRLLRS-VPSL--DQTTITF 1723 (1922)
Q Consensus 1664 ----rLWDlrtgk~I~-----kf~gh~~~VsVaFSPdG~~LASGS------e--IWDLrTgklL~t-l~gH--~~~sVaF 1723 (1922)
.+.|.......+ .+..+..+..+.+.|+|.++.... . +.|..++..... +... ....+.+
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~ 260 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAV 260 (381)
T ss_pred CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeE
Confidence 677755544432 123333444789999999665544 1 456666666654 2222 2367999
Q ss_pred ccCCCEEEEEE
Q 000177 1724 NARGDVIYAIL 1734 (1922)
Q Consensus 1724 SPdG~~LaSgs 1734 (1922)
+|+|.+++...
T Consensus 261 ~p~g~~~yv~~ 271 (381)
T COG3391 261 DPAGKAAYVAN 271 (381)
T ss_pred CCCCCEEEEEe
Confidence 99999999884
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=1.5 Score=54.95 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=107.3
Q ss_pred EEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe--cCCcEEEeccCCCCC
Q 000177 1512 LTCITFLGDSSHIAVGSH---TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS--SSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~---DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS--sDgtVkLWDl~t~~g 1586 (1922)
...++|+++++.+..+.. +++|.+.|..+++...+...-..+ ..+ .++|+|..+... .++.|.+.|... .
T Consensus 118 P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~--a~~p~g~~vyv~~~~~~~v~vi~~~~--~ 192 (381)
T COG3391 118 PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGV--AVDPDGNKVYVTNSDDNTVSVIDTSG--N 192 (381)
T ss_pred CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceE--EECCCCCeEEEEecCCCeEEEEeCCC--c
Confidence 457899999988877766 688999998888887776433344 667 889999966664 589999999875 2
Q ss_pred Ccc--------eEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee-eccccccccCCCCcceEEEEcCCCC
Q 000177 1587 GPM--------HSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK-LSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1587 k~l--------~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t-L~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
... ..+.....+.+.|+|.++......+.++.+...|..++..... +. ...+ ....+.++|+|.
T Consensus 193 ~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~------~~~~-~~~~v~~~p~g~ 265 (381)
T COG3391 193 SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP------VGSG-APRGVAVDPAGK 265 (381)
T ss_pred ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc------cccC-CCCceeECCCCC
Confidence 222 2223347899999999777764444457999999998877665 22 0112 233388999998
Q ss_pred eEeec----c--EEEEcCCCcceeeecc
Q 000177 1658 MLLWN----G--ILWDRRNSVPVHRFDQ 1679 (1922)
Q Consensus 1658 lLaSg----g--rLWDlrtgk~I~kf~g 1679 (1922)
.+... + .+-|..+.+....+..
T Consensus 266 ~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 266 AAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred EEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 87755 2 5556555555554443
No 347
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=94.57 E-value=0.042 Score=74.99 Aligned_cols=15 Identities=13% Similarity=0.472 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhh
Q 000177 1422 LDSLVVQYLKHQHRQ 1436 (1922)
Q Consensus 1422 LdsIVtqyLr~QH~q 1436 (1922)
=+.++..|.+++.++
T Consensus 85 Eekml~Rf~~Er~~~ 99 (840)
T PF04147_consen 85 EEKMLERFTRERQRQ 99 (840)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555665555443
No 348
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.36 E-value=3 Score=50.01 Aligned_cols=189 Identities=12% Similarity=0.171 Sum_probs=104.2
Q ss_pred eeeEEecCCCCCCE-EEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceeeecc-CCCCeeEEEeeecCCCcEEEEecCC
Q 000177 1499 RPWRTCRDDAGALL-TCITFLGDSSHIAVGSHTK--ELKIFDSNSSSPLESCTS-HQAPVTLVQSHLSGETQLLLSSSSQ 1574 (1922)
Q Consensus 1499 rpirtLrgH~d~~V-t~LaFSPDG~lLASGS~DG--tIkIWDl~tgk~l~tL~g-Hss~VtsLq~afSpDG~lLaSSsDg 1574 (1922)
+.+.++. |....+ ..+.|..+|.++-+.+.-| .|+.+|+.+++......- ....--.| ....|.-+.+|=.++
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGi--t~~~d~l~qLTWk~~ 110 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGI--TILGDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEE--EEETTEEEEEESSSS
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeE--EEECCEEEEEEecCC
Confidence 4455554 332444 4678878888888888777 799999999987755421 12222233 333343334444588
Q ss_pred cEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc---ce
Q 000177 1575 DVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA---YS 1648 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~---~~ 1648 (1922)
...+||..+ .+.+.+|.- -+.++ .+++.|+.. .....++++|..+.+...++.... .+.+ .+
T Consensus 111 ~~f~yd~~t--l~~~~~~~y~~EGWGLt--~dg~~Li~S---DGS~~L~~~dP~~f~~~~~i~V~~-----~g~pv~~LN 178 (264)
T PF05096_consen 111 TGFVYDPNT--LKKIGTFPYPGEGWGLT--SDGKRLIMS---DGSSRLYFLDPETFKEVRTIQVTD-----NGRPVSNLN 178 (264)
T ss_dssp EEEEEETTT--TEEEEEEE-SSS--EEE--ECSSCEEEE----SSSEEEEE-TTT-SEEEEEE-EE-----TTEE---EE
T ss_pred eEEEEcccc--ceEEEEEecCCcceEEE--cCCCEEEEE---CCccceEEECCcccceEEEEEEEE-----CCEECCCcE
Confidence 999999987 566666542 26666 456666665 345779999999888777765211 1111 11
Q ss_pred EEEEcCCCCeEeec--c---EEEEcCCCcceeeecc----------C----CCce--EEEEecCCCEEEEEeEEEe
Q 000177 1649 QIHFSPSDTMLLWN--G---ILWDRRNSVPVHRFDQ----------F----TDHG--GGGFHPAGNEVIINSEVWD 1703 (1922)
Q Consensus 1649 vVaFSPdG~lLaSg--g---rLWDlrtgk~I~kf~g----------h----~~~V--sVaFSPdG~~LASGSeIWD 1703 (1922)
-+.|- +|.+.+.. . ...|..+|+.+..++- . ...| .++|.|....+...+|.|.
T Consensus 179 ELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp 253 (264)
T PF05096_consen 179 ELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWP 253 (264)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-S
T ss_pred eEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCC
Confidence 14443 44444411 1 5566677766554421 0 1233 7888888777777776554
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.32 E-value=0.71 Score=59.08 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=83.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEe-ccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLW-NASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLW-Dl~t~~gk~ 1588 (1922)
-....+.++|+|+++++ ..||.-.|+.......... +.-... .|.+.+++.+--..++|+|+ ++.. ..
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~--vw~~~n~yAv~~~~~~I~I~kn~~~---~~ 101 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSF--VWSSRNRYAVLESSSTIKIYKNFKN---EV 101 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEE--EE-TSSEEEEE-TTS-EEEEETTEE----T
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEE--EEecCccEEEEECCCeEEEEEcCcc---cc
Confidence 45678999999999988 6677788887433322221 122233 67887777776678889995 5543 22
Q ss_pred ceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----
Q 000177 1589 MHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG---- 1663 (1922)
Q Consensus 1589 l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---- 1663 (1922)
..+++-. ..-...+ |..|... .++.|.+||+.+++.+..+. -..+..+.|+++|++++-.+
T Consensus 102 ~k~i~~~~~~~~If~-G~LL~~~----~~~~i~~yDw~~~~~i~~i~---------v~~vk~V~Ws~~g~~val~t~~~i 167 (443)
T PF04053_consen 102 VKSIKLPFSVEKIFG-GNLLGVK----SSDFICFYDWETGKLIRRID---------VSAVKYVIWSDDGELVALVTKDSI 167 (443)
T ss_dssp T-----SS-EEEEE--SSSEEEE----ETTEEEEE-TTT--EEEEES---------S-E-EEEEE-TTSSEEEEE-S-SE
T ss_pred ceEEcCCcccceEEc-CcEEEEE----CCCCEEEEEhhHcceeeEEe---------cCCCcEEEEECCCCEEEEEeCCeE
Confidence 2233222 1111222 7777765 23479999999999999986 12235699999999998555
Q ss_pred EEEEcCCC-----------cceeeeccCCCce-EEEEecC
Q 000177 1664 ILWDRRNS-----------VPVHRFDQFTDHG-GGGFHPA 1691 (1922)
Q Consensus 1664 rLWDlrtg-----------k~I~kf~gh~~~V-sVaFSPd 1691 (1922)
.+++.... ..+..+......| +.+|.-+
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 56554322 0222332223344 7888776
No 350
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.20 E-value=6.6 Score=49.26 Aligned_cols=106 Identities=8% Similarity=-0.011 Sum_probs=69.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc-eeE
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC-KAA 1598 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh-~sV 1598 (1922)
++..|+.++.+|.+.-+|..+|+.+-+..... .+.+- +.. .++.+++...++.+.-+|..+ ++.+.++... ..+
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ss-P~v-~~~~v~v~~~~g~l~ald~~t--G~~~W~~~~~~~~~ 193 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSR-PVV-SDGLVLVHTSNGMLQALNESD--GAVKWTVNLDVPSL 193 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecC-CEE-ECCEEEEECCCCEEEEEEccC--CCEeeeecCCCCcc
Confidence 35678889999999999999999877665332 22211 011 256666666788999999988 7777666431 100
Q ss_pred ----EEcC--CCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1599 ----RFSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1599 ----aFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
.-+| .+..++.+ +.++.+..+|..+|+.+...
T Consensus 194 ~~~~~~sP~v~~~~v~~~---~~~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 194 TLRGESAPATAFGGAIVG---GDNGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cccCCCCCEEECCEEEEE---cCCCEEEEEEccCChhhhee
Confidence 1122 13345555 66788999999999876654
No 351
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.84 E-value=10 Score=47.72 Aligned_cols=240 Identities=12% Similarity=0.054 Sum_probs=111.0
Q ss_pred ccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc
Q 000177 1487 NRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ 1566 (1922)
Q Consensus 1487 ~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~ 1566 (1922)
.+....+.+..+...+ |+.+.........++|+++.|+--.....|+-.|+.+.+....+.-....+-...|..+.|+.
T Consensus 59 ~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t 137 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT 137 (386)
T ss_dssp S-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS
T ss_pred CcceEEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCcc
Confidence 3333333344444333 554331222245667888888766666789999999988776666666666556455566777
Q ss_pred EEEEe----cCC-------------------cEEEeccCCCCCCcceEecc---ceeEEEcC-CCCEEEEeecCCCCCe-
Q 000177 1567 LLLSS----SSQ-------------------DVHLWNASSIAGGPMHSFEG---CKAARFSN-SGNLFAALPTETSDRG- 1618 (1922)
Q Consensus 1567 lLaSS----sDg-------------------tVkLWDl~t~~gk~l~tf~g---h~sVaFSP-DG~~LaSgS~~S~Dgt- 1618 (1922)
.++.. .|. .|.-.|+.+ ++....+.. ...+.|+| +...|+.|-.+..|..
T Consensus 138 ~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t--G~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd 215 (386)
T PF14583_consen 138 KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT--GERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVD 215 (386)
T ss_dssp EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS
T ss_pred EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC--CceeEEEecCccccCcccCCCCCCEEEEeccCCcceec
Confidence 77653 122 133334444 443333332 25689999 5677777755555553
Q ss_pred EEEEECCC-CceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------EEEEcCCCcceeeeccCCCceEEE
Q 000177 1619 ILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFDQFTDHGGGG 1687 (1922)
Q Consensus 1619 IrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~gh~~~VsVa 1687 (1922)
-+||-+++ +.....+... . .+-...-=-|.|+|..|...+ .-+|+.+++...... ....+-..
T Consensus 216 ~RiW~i~~dg~~~~~v~~~-~----~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-~p~~~H~~ 289 (386)
T PF14583_consen 216 QRIWTINTDGSNVKKVHRR-M----EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-MPWCSHFM 289 (386)
T ss_dssp -SEEEEETTS---EESS--------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-E-SEEEEE
T ss_pred eEEEEEEcCCCcceeeecC-C----CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-CCceeeeE
Confidence 36776653 3333333200 0 111111146899998777443 345566664422111 11122445
Q ss_pred EecCCCEEEEEe---------------------EEEecCCCeEEE---------EEcCCCc---eeEEEccCCCEEEEEE
Q 000177 1688 FHPAGNEVIINS---------------------EVWDLRKFRLLR---------SVPSLDQ---TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1688 FSPdG~~LASGS---------------------eIWDLrTgklL~---------tl~gH~~---~sVaFSPdG~~LaSgs 1734 (1922)
-+++|++++.-+ .++++.+++... .+.++.+ ..+.|+|||++|+-.+
T Consensus 290 ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~S 369 (386)
T PF14583_consen 290 SSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRS 369 (386)
T ss_dssp E-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE
T ss_pred EcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEEC
Confidence 567888776533 035666554321 1122222 4789999999888764
Q ss_pred c
Q 000177 1735 R 1735 (1922)
Q Consensus 1735 ~ 1735 (1922)
.
T Consensus 370 d 370 (386)
T PF14583_consen 370 D 370 (386)
T ss_dssp -
T ss_pred C
Confidence 3
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=93.71 E-value=0.13 Score=39.09 Aligned_cols=38 Identities=29% Similarity=0.531 Sum_probs=31.1
Q ss_pred CCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1541 SSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1541 gk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
+++...+..|...|+++ .|++++.+++++ .|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSV--AFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEE--EECCCCCEEEEecCCCeEEEcC
Confidence 34566778899999999 778888888885 599999996
No 353
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.053 Score=71.75 Aligned_cols=88 Identities=24% Similarity=0.386 Sum_probs=42.9
Q ss_pred HHHHHHHhCccccHHHHHHHHhhcchHHHHHHHhccCCCCCCccchhHHHHHHHHHHHHHHHHhccCCCcccccccccCc
Q 000177 1069 ALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGGQTPATEQGRWQAELSQVAIELIAIVTNSGRASTLAATDAATP 1148 (1922)
Q Consensus 1069 aLAcraL~GLaR~~~vrqIlskLpl~~~lq~Lmr~p~lq~~~~e~~~f~~~f~~~A~eLie~vt~sGk~~~~~a~da~~~ 1148 (1922)
++||+-|.-|--+-+|.. |-+ -.+|.=|++- .-||.-|-|--..|+..|- +- -.|+..-
T Consensus 885 a~ac~p~fNllAnce~kk---k~a-----g~il~ipgvd------rpwhshfikdgqsLMQ~iL---~C----Dad~~~Q 943 (3015)
T KOG0943|consen 885 AMACHPLFNLLANCEIKK---KAA-----GIILAIPGVD------RPWHSHFIKDGQSLMQHIL---RC----DADACRQ 943 (3015)
T ss_pred hhhhchhhcccccccccc---cce-----eEEEEecCCC------CcchhhhccchHHHHHHHH---hc----CHHHHHH
Confidence 889999988533333321 111 0123333332 2366666667777777772 11 1333334
Q ss_pred hHHHHHHHhhhhccccccChHHHHHHHHHHHHh
Q 000177 1149 TLRRIERAAIAAATPISYHSRELLLLIHEHLQA 1181 (1922)
Q Consensus 1149 sL~~i~RA~IvA~T~I~y~e~ELL~LI~~HL~~ 1181 (1922)
-|-+++.|-+ .-.|+-+| .-|.|-|.|.+
T Consensus 944 fLd~L~e~rm--sctishhE--f~~iM~eqffs 972 (3015)
T KOG0943|consen 944 FLDNLEEARM--SCTISHHE--FNLIMLEQFFS 972 (3015)
T ss_pred HHHHHHHHHh--hhhhhhHH--HHHHHHHHHHH
Confidence 5667776644 23344443 33444444443
No 354
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.49 E-value=0.8 Score=60.27 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=61.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCC
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASS 1583 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t 1583 (1922)
+++++|+|..-.|+.|-.-|.+.+|..++.+.-.....|..+|..+ .||++|..++|++ -|.|.+|....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l--~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGL--DWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeE--EecCCCCeEEEcCCCceeEEEEeee
Confidence 4679999998899999999999999987776655567899999999 7899999999976 78999998864
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.30 E-value=0.035 Score=70.84 Aligned_cols=169 Identities=17% Similarity=0.309 Sum_probs=107.8
Q ss_pred CCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCCc--eeeeccCCCCeeEEEeeecC-CCcEEEEe-----cCCcEEEe
Q 000177 1510 ALLTCITFLGDS--SHIAVGSHTKELKIFDSNSSSP--LESCTSHQAPVTLVQSHLSG-ETQLLLSS-----SSQDVHLW 1579 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG--~lLASGS~DGtIkIWDl~tgk~--l~tL~gHss~VtsLq~afSp-DG~lLaSS-----sDgtVkLW 1579 (1922)
..+.|++++.+. -+++.|..+|.|-+-.+....- .....+|..+.+++ +|++ |..+|+.| .|..+.||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~l--AwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSL--AWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccc--ccccccHHHHHhhhhhhcccCCccce
Confidence 346788776643 4789999999999988754332 23457888999999 5665 56677776 26679999
Q ss_pred ccCCCCCCcce-------EeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccccCCCCcceEEE
Q 000177 1580 NASSIAGGPMH-------SFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1580 Dl~t~~gk~l~-------tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
|+.+.-..|.. ++.+..+++|-.+.+.+++| ...+.++++|++... ....+. .....-++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaG---m~sr~~~ifdlRqs~~~~~svn---------Tk~vqG~t 202 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAG---MTSRSVHIFDLRQSLDSVSSVN---------TKYVQGIT 202 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcc---cccchhhhhhhhhhhhhhhhhh---------hhhcccce
Confidence 99872112221 23345789999888888887 666789999998321 111111 01111266
Q ss_pred EcC-CCCeEeecc----EEEE-cCCC-cceeeeccCCC-----ceEEEEecCC
Q 000177 1652 FSP-SDTMLLWNG----ILWD-RRNS-VPVHRFDQFTD-----HGGGGFHPAG 1692 (1922)
Q Consensus 1652 FSP-dG~lLaSgg----rLWD-lrtg-k~I~kf~gh~~-----~VsVaFSPdG 1692 (1922)
++| .+.++++.. .+|| .++- .++..+....+ ...++|+|..
T Consensus 203 Vdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 203 VDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred ecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 777 667777554 8999 4432 34433332222 2278999864
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.13 E-value=0.87 Score=61.56 Aligned_cols=132 Identities=15% Similarity=0.162 Sum_probs=85.4
Q ss_pred EEeCCCcEEEEECCCCCceeeeccCCCC-eeEEEee--ec--CCCcEEEEecCCcEEEeccCCCCCCcce----Eecc--
Q 000177 1526 VGSHTKELKIFDSNSSSPLESCTSHQAP-VTLVQSH--LS--GETQLLLSSSSQDVHLWNASSIAGGPMH----SFEG-- 1594 (1922)
Q Consensus 1526 SGS~DGtIkIWDl~tgk~l~tL~gHss~-VtsLq~a--fS--pDG~lLaSSsDgtVkLWDl~t~~gk~l~----tf~g-- 1594 (1922)
.......|+-.|++.|+.+..+..|... |..+... |. .+.+.++.=+++.+..||.+....+++. .+..
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 3345678999999999999999888755 7777221 11 1234455557888999999863222221 1111
Q ss_pred -ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----EEEEc
Q 000177 1595 -CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDR 1668 (1922)
Q Consensus 1595 -h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDl 1668 (1922)
..|++-..+|. ||.| +.+|.||+||- .|+..++.- ++.|.++..+..+.||+||+..+ .|++.
T Consensus 579 ~Fs~~aTt~~G~-iavg---s~~G~IRLyd~-~g~~AKT~l------p~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDGY-IAVG---SNKGDIRLYDR-LGKRAKTAL------PGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CceEEEecCCce-EEEE---eCCCcEEeecc-cchhhhhcC------CCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 25566565665 6677 88999999994 444333332 23466666699999999998665 55554
No 357
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.08 E-value=3.2 Score=55.60 Aligned_cols=172 Identities=15% Similarity=0.215 Sum_probs=105.7
Q ss_pred ecCceeeEEecCCCCCC-EEEEEEcCCCCEEEEEeCCCc-----EEEEECCCC------Ccee--eecc-----CCCCee
Q 000177 1495 YSRFRPWRTCRDDAGAL-LTCITFLGDSSHIAVGSHTKE-----LKIFDSNSS------SPLE--SCTS-----HQAPVT 1555 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~-Vt~LaFSPDG~lLASGS~DGt-----IkIWDl~tg------k~l~--tL~g-----Hss~Vt 1555 (1922)
.+.++.++.|+.|. .. |..+....+..+|++-+.|+. |+||+++.- .++. .+.. ...++.
T Consensus 51 n~s~~~~~~fqa~~-~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s 129 (933)
T KOG2114|consen 51 NSSFQLIRGFQAYE-QSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPAS 129 (933)
T ss_pred cccceeeehheecc-hhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcce
Confidence 45666668888877 44 555555545578888777654 899998642 2331 2222 245677
Q ss_pred EEEeeecCCCcEEEEe-cCCcEEEeccCCC--CCC-cceEec---cceeEEEcCCCCE--EEEeecCCCCCeEEEEECCC
Q 000177 1556 LVQSHLSGETQLLLSS-SSQDVHLWNASSI--AGG-PMHSFE---GCKAARFSNSGNL--FAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1556 sLq~afSpDG~lLaSS-sDgtVkLWDl~t~--~gk-~l~tf~---gh~sVaFSPDG~~--LaSgS~~S~DgtIrIWDlrT 1626 (1922)
++ +.+.+-+.++.| .+|.|..+.-.-. .+. ...... .++.+.|..+++. |+++ -..|.+|.+..
T Consensus 130 ~l--~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T-----t~~V~~y~l~g 202 (933)
T KOG2114|consen 130 SL--AVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT-----TEQVMLYSLSG 202 (933)
T ss_pred EE--EEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe-----cceeEEEEecC
Confidence 88 778888888888 5898888743220 011 111111 2588899888876 4443 25699999984
Q ss_pred Cce-eeeeccccccccCCCCcceEEEEcCCCC-eEeecc---EEEEcCCCcceeeec-cCC
Q 000177 1627 YQL-EAKLSDTSVNLTGRGHAYSQIHFSPSDT-MLLWNG---ILWDRRNSVPVHRFD-QFT 1681 (1922)
Q Consensus 1627 gk~-i~tL~d~s~~~~~~gh~~~vVaFSPdG~-lLaSgg---rLWDlrtgk~I~kf~-gh~ 1681 (1922)
..+ ..++. .+|-..++.+|++... ++++++ .+||....++-..|. ++.
T Consensus 203 r~p~~~~ld-------~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 203 RTPSLKVLD-------NNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred CCcceeeec-------cCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCe
Confidence 331 22232 2466667778887665 555555 788877655666665 444
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.28 Score=63.11 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=67.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCee-EEEeeecCCCcEEEEe-cCCcEEEeccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVT-LVQSHLSGETQLLLSS-SSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~Vt-sLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk 1587 (1922)
..|..+.|+|.-.+||++..+|.|.+.-++ .+.+.++.-|...|+ ++ +|.|||++|+.| .||+|+|.|+.+ +.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL--~W~~DGkllaVg~kdG~I~L~Dve~--~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASL--CWRPDGKLLAVGFKDGTIRLHDVEK--GG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceee--eecCCCCEEEEEecCCeEEEEEccC--CC
Confidence 468899999999999999999999999987 777788887888888 88 889999999998 599999999998 55
Q ss_pred cceE
Q 000177 1588 PMHS 1591 (1922)
Q Consensus 1588 ~l~t 1591 (1922)
.+..
T Consensus 96 ~l~~ 99 (665)
T KOG4640|consen 96 RLVS 99 (665)
T ss_pred ceec
Confidence 4544
No 359
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.33 E-value=4.3 Score=55.26 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=85.6
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCC-Cceeeec----cCCCCeeEEEee
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLG-----DSSHIAVGSHTKELKIFDSNSS-SPLESCT----SHQAPVTLVQSH 1560 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSP-----DG~lLASGS~DGtIkIWDl~tg-k~l~tL~----gHss~VtsLq~a 1560 (1922)
.++...+++.+....-|.+.+|..++=.. +..-.+.|-.+..+..||..-. ..+..-. .......|+ +
T Consensus 507 y~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~--a 584 (794)
T PF08553_consen 507 YKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF--A 584 (794)
T ss_pred EEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE--E
Confidence 34556777878877777644455543211 2345688999999999998643 2222111 223455666 7
Q ss_pred ecCCCcEEEEecCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1561 LSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1561 fSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
-+.+|.+++++.+|.|+|||--. .+....|.+ +.+|..+.||++++++ .+..+.++|..
T Consensus 585 Tt~~G~iavgs~~G~IRLyd~~g--~~AKT~lp~lG~pI~~iDvt~DGkwilaT----c~tyLlLi~t~ 647 (794)
T PF08553_consen 585 TTEDGYIAVGSNKGDIRLYDRLG--KRAKTALPGLGDPIIGIDVTADGKWILAT----CKTYLLLIDTL 647 (794)
T ss_pred ecCCceEEEEeCCCcEEeecccc--hhhhhcCCCCCCCeeEEEecCCCcEEEEe----ecceEEEEEEe
Confidence 78899999889999999999532 233344444 5889999999998874 46778888864
No 360
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.24 E-value=1.4 Score=56.25 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=84.7
Q ss_pred CCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc--------EEEEecCCcEEEeccCCCCCC-cc
Q 000177 1520 DSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ--------LLLSSSSQDVHLWNASSIAGG-PM 1589 (1922)
Q Consensus 1520 DG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~--------lLaSSsDgtVkLWDl~t~~gk-~l 1589 (1922)
+.+ +|.+|.....|+-.|++.|+.+..++-|.. |+-+ .+.|+.+ .|+.=+|..|.-||.+-. +. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv--~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~-~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMV--DITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ-GKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-ccee--eccCCcchhcccccccEEeecCCceEEeccccc-Cccee
Confidence 444 445666777888899999999999988877 5555 4455543 233336889999999852 22 12
Q ss_pred eEeccc--------eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEee
Q 000177 1590 HSFEGC--------KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLW 1661 (1922)
Q Consensus 1590 ~tf~gh--------~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaS 1661 (1922)
..-+++ .|.+-..+| +|+.| +.+|.|++||- .+...++.- ++.|..+.-+..+.+|++|+.
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG-~Ivvg---S~~GdIRLYdr-i~~~AKTAl------PgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG-YIVVG---SLKGDIRLYDR-IGRRAKTAL------PGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred eeeeccccccccccceeeecCCc-eEEEe---ecCCcEEeehh-hhhhhhhcc------cccCCceeeEEeeccCcEEEE
Confidence 122222 333333344 56777 88899999997 555555443 334666666999999999885
Q ss_pred cc
Q 000177 1662 NG 1663 (1922)
Q Consensus 1662 gg 1663 (1922)
.+
T Consensus 489 Tc 490 (644)
T KOG2395|consen 489 TC 490 (644)
T ss_pred ec
Confidence 55
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.23 E-value=14 Score=47.09 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=46.7
Q ss_pred EEEcCCCCEEEEEeCC----------C-cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccC
Q 000177 1515 ITFLGDSSHIAVGSHT----------K-ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNAS 1582 (1922)
Q Consensus 1515 LaFSPDG~lLASGS~D----------G-tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~ 1582 (1922)
++.+|.|..||.-..+ . .|+||+. .|+.+.++.=-.+.|.++ .|+.+..+++...||+++++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~--~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGM--GWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEE--EECCCCeEEEEEcCCEEEEEeCC
Confidence 3445555555554433 2 4899986 577776653223788888 77888889988999999999996
No 362
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.22 E-value=13 Score=44.42 Aligned_cols=105 Identities=15% Similarity=0.142 Sum_probs=72.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEeccc----
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC---- 1595 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh---- 1595 (1922)
..+++.||..+.++--|..+|+....-.. ...|.+-... -|.+++. +..+.+.+.++++ +...+.|...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~t--Gs~~w~f~~~~~vk 96 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV---VGDFVVLGCYSGGLYFLCVKT--GSQIWNFVILETVK 96 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE---ECCEEEEEEccCcEEEEEecc--hhheeeeeehhhhc
Confidence 45788899999888888888876532210 1122222101 2334544 6799999999998 7666666432
Q ss_pred eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1596 KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1596 ~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
......+++..|..| +.|++.+..|.++..++.+.+
T Consensus 97 ~~a~~d~~~glIycg---shd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCG---SHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred cceEEcCCCceEEEe---cCCCcEEEecccccceEEecc
Confidence 334566788999998 899999999999999988765
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.04 E-value=10 Score=46.65 Aligned_cols=128 Identities=12% Similarity=0.108 Sum_probs=80.3
Q ss_pred eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--EEEEcCCCcc
Q 000177 1596 KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--ILWDRRNSVP 1673 (1922)
Q Consensus 1596 ~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--rLWDlrtgk~ 1673 (1922)
.+..|.++...|+-+ +-..+.|+-||..+++....-. .+.......+...+.++++.. .+++..++..
T Consensus 28 EgP~w~~~~~~L~w~--DI~~~~i~r~~~~~g~~~~~~~--------p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~ 97 (307)
T COG3386 28 EGPVWDPDRGALLWV--DILGGRIHRLDPETGKKRVFPS--------PGGFSSGALIDAGGRLIACEHGVRLLDPDTGGK 97 (307)
T ss_pred cCccCcCCCCEEEEE--eCCCCeEEEecCCcCceEEEEC--------CCCcccceeecCCCeEEEEccccEEEeccCCce
Confidence 345688877755544 3667889999998765432221 123333467777777777655 7888876655
Q ss_pred eeeec----cCCC--ceEEEEecCCCEEEEEe--------------EEEecC-CCeEEEEEcCCCc--eeEEEccCCCEE
Q 000177 1674 VHRFD----QFTD--HGGGGFHPAGNEVIINS--------------EVWDLR-KFRLLRSVPSLDQ--TTITFNARGDVI 1730 (1922)
Q Consensus 1674 I~kf~----gh~~--~VsVaFSPdG~~LASGS--------------eIWDLr-TgklL~tl~gH~~--~sVaFSPdG~~L 1730 (1922)
+..+. +... ...+...|+|.+.++.. .||-+. .++.++.+..+-. +.++|||+|+.+
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEE
Confidence 33332 1111 11678888888766533 266666 4566665555322 899999999999
Q ss_pred EEE
Q 000177 1731 YAI 1733 (1922)
Q Consensus 1731 aSg 1733 (1922)
|.+
T Consensus 178 y~a 180 (307)
T COG3386 178 YVA 180 (307)
T ss_pred EEE
Confidence 987
No 364
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=91.85 E-value=3.2 Score=43.76 Aligned_cols=66 Identities=20% Similarity=0.346 Sum_probs=46.5
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccC
Q 000177 1512 LTCITFLG---DS-SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNAS 1582 (1922)
Q Consensus 1512 Vt~LaFSP---DG-~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~ 1582 (1922)
|+++++.. || +.|++||.|..|+||+- ...+..+.. ++.|+++ .....+++..+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L--~~~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSL--CSLGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEE--EEcCCCEEEEEecCCEEEEEeCc
Confidence 56666554 44 48999999999999984 345555543 4678888 55556666666678888887764
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.52 E-value=0.088 Score=67.37 Aligned_cols=155 Identities=23% Similarity=0.269 Sum_probs=97.0
Q ss_pred EecCCCCCCEEEEEEcC-CCCEEEEEe----CCCcEEEEECCCC--Ccee--eecc-CCCCeeEEEeeecCCCcEEEEec
Q 000177 1503 TCRDDAGALLTCITFLG-DSSHIAVGS----HTKELKIFDSNSS--SPLE--SCTS-HQAPVTLVQSHLSGETQLLLSSS 1572 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSP-DG~lLASGS----~DGtIkIWDl~tg--k~l~--tL~g-Hss~VtsLq~afSpDG~lLaSSs 1572 (1922)
+..+|. ...++++|++ |.++||.|- .|..++|||+.++ .+.. .|.+ -.....++ +|-.+.+++.+|.
T Consensus 97 ~tp~~a-r~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~--cwlrd~klvlaGm 173 (783)
T KOG1008|consen 97 VTPGYA-RPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSV--CWLRDTKLVLAGM 173 (783)
T ss_pred eccccc-ccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccc--ccccCcchhhccc
Confidence 345677 8899999998 677888874 4668999999877 3322 2222 34456678 5668888998875
Q ss_pred -CCcEEEeccCCCCCCcceEe--ccceeEEEcC-CCCEEEEeecCCCCCeEEEEEC-CC-Cceeeeec-cccccccCCCC
Q 000177 1573 -SQDVHLWNASSIAGGPMHSF--EGCKAARFSN-SGNLFAALPTETSDRGILLYDI-QT-YQLEAKLS-DTSVNLTGRGH 1645 (1922)
Q Consensus 1573 -DgtVkLWDl~t~~gk~l~tf--~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDl-rT-gk~i~tL~-d~s~~~~~~gh 1645 (1922)
...++++|++.. ......+ +-|..+...| .++++++ ..|+.|.+||. +. .+.+.++. ++.. ...
T Consensus 174 ~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs----~~dg~iAiwD~~rnienpl~~i~~~~N~----~~~ 244 (783)
T KOG1008|consen 174 TSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCS----NSDGDIAIWDTYRNIENPLQIILRNENK----KPK 244 (783)
T ss_pred ccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceec----cccCceeeccchhhhccHHHHHhhCCCC----ccc
Confidence 679999999841 1111222 2356778888 7888877 55899999994 32 12222221 0000 011
Q ss_pred cceEEEEcCCCCeE-eecc------EEEEcC
Q 000177 1646 AYSQIHFSPSDTML-LWNG------ILWDRR 1669 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lL-aSgg------rLWDlr 1669 (1922)
....++|.|...-+ ++.. +++|+.
T Consensus 245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 245 QLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 23348999976433 3222 788876
No 366
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=0.15 Score=67.70 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=13.7
Q ss_pred ccCCCcCCCCCCCCCCCcccc
Q 000177 285 VTHGDECGADDGEPHDGLAAG 305 (1922)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~ 305 (1922)
.++|.+.++||++.-..+.+|
T Consensus 82 ~~e~Keaea~~ge~nS~l~~~ 102 (3015)
T KOG0943|consen 82 LEEGKEAEADGGELNSNLGAG 102 (3015)
T ss_pred hccCCccccccCccccccccc
Confidence 357788888888665544443
No 367
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=90.33 E-value=11 Score=45.04 Aligned_cols=176 Identities=15% Similarity=0.258 Sum_probs=90.7
Q ss_pred eeccCCCCeeEEEeeecCCCcEEEE-ec-CCcEEEeccCCCCCCcceEec--c---ceeEEEcCCCCEEEEeecCCCCCe
Q 000177 1546 SCTSHQAPVTLVQSHLSGETQLLLS-SS-SQDVHLWNASSIAGGPMHSFE--G---CKAARFSNSGNLFAALPTETSDRG 1618 (1922)
Q Consensus 1546 tL~gHss~VtsLq~afSpDG~lLaS-Ss-DgtVkLWDl~t~~gk~l~tf~--g---h~sVaFSPDG~~LaSgS~~S~Dgt 1618 (1922)
.+.+-...+..| +|+|+...|++ .. .+.|...+.. ++.++++. + .-.|++..++.++++- ..++.
T Consensus 16 ~l~g~~~e~SGL--Ty~pd~~tLfaV~d~~~~i~els~~---G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~---Er~~~ 87 (248)
T PF06977_consen 16 PLPGILDELSGL--TYNPDTGTLFAVQDEPGEIYELSLD---GKVLRRIPLDGFGDYEGITYLGNGRYVLSE---ERDQR 87 (248)
T ss_dssp E-TT--S-EEEE--EEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STTEEEEEE---TTTTE
T ss_pred ECCCccCCcccc--EEcCCCCeEEEEECCCCEEEEEcCC---CCEEEEEeCCCCCCceeEEEECCCEEEEEE---cCCCc
Confidence 345555679999 88998665555 43 6667666653 56666543 3 2678888888777765 56889
Q ss_pred EEEEECCCCce------eeeecccccccc-CCCCcceEEEEcCCCCeEeecc-----EEEEcCC---Ccceeee-----c
Q 000177 1619 ILLYDIQTYQL------EAKLSDTSVNLT-GRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN---SVPVHRF-----D 1678 (1922)
Q Consensus 1619 IrIWDlrTgk~------i~tL~d~s~~~~-~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt---gk~I~kf-----~ 1678 (1922)
+.++++..... ...+. +... ..+....-++|+|.++.|+..- .||.++. ...+... .
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~---l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKIS---LGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred EEEEEEeccccccchhhceEEe---cccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 99998843211 11221 1110 0112233499999876666444 5666654 2121111 1
Q ss_pred ---cCCCce-EEEEecCCCEEEEEe----E--EEecCCCeEEEEEcCCC----------c-eeEEEccCCCEEEEE
Q 000177 1679 ---QFTDHG-GGGFHPAGNEVIINS----E--VWDLRKFRLLRSVPSLD----------Q-TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1679 ---gh~~~V-sVaFSPdG~~LASGS----e--IWDLrTgklL~tl~gH~----------~-~sVaFSPdG~~LaSg 1733 (1922)
.+...+ ++.|+|....+..-| . ++| .+|+++..+.-.. + -.|+|.++|+..++.
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 111123 789999866555545 2 667 4587777665111 1 699999999666655
No 368
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=90.25 E-value=55 Score=42.70 Aligned_cols=109 Identities=11% Similarity=0.160 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeeeccCCCC-----eeEEEeeecCCCcEEEEe---------cCCcEEEeccCCCCCC
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPLESCTSHQAP-----VTLVQSHLSGETQLLLSS---------SSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~-----VtsLq~afSpDG~lLaSS---------sDgtVkLWDl~t~~gk 1587 (1922)
..++.++.+|.|.-+|..+|+.+-.+...... |.+- ..+. ++.+++.+ .++.+.-+|..+ ++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ss-P~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~T--G~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGA-PTIV-KKLVIIGSSGAEFFACGVRGALRAYDVET--GK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCC-CEEE-CCEEEEeccccccccCCCCcEEEEEECCC--Cc
Confidence 67888999999999999999988766432210 1110 0111 34444433 256777788877 66
Q ss_pred cceEeccc-------------------------eeEEEcCCCCEEEEeecCC---------------CCCeEEEEECCCC
Q 000177 1588 PMHSFEGC-------------------------KAARFSNSGNLFAALPTET---------------SDRGILLYDIQTY 1627 (1922)
Q Consensus 1588 ~l~tf~gh-------------------------~sVaFSPDG~~LaSgS~~S---------------~DgtIrIWDlrTg 1627 (1922)
.+.++... ....+.+.+.+++.++.++ .++.|.-+|..+|
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 66555321 1233444455666662111 1237999999999
Q ss_pred ceeeeec
Q 000177 1628 QLEAKLS 1634 (1922)
Q Consensus 1628 k~i~tL~ 1634 (1922)
+.+..+.
T Consensus 267 ~~~W~~~ 273 (488)
T cd00216 267 KVKWFYQ 273 (488)
T ss_pred CEEEEee
Confidence 9988765
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.02 E-value=0.77 Score=62.23 Aligned_cols=74 Identities=24% Similarity=0.342 Sum_probs=58.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEe-eecCCCcEEEEec-CCcEEEeccC
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQS-HLSGETQLLLSSS-SQDVHLWNAS 1582 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~-afSpDG~lLaSSs-DgtVkLWDl~ 1582 (1922)
|..++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..|..+++++-+ -+..++..+++++ -|. +|.+.
T Consensus 128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 44489999999999999999999999999999999999999877777766632 4555666666665 333 56553
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=89.88 E-value=36 Score=41.98 Aligned_cols=202 Identities=13% Similarity=0.107 Sum_probs=101.4
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEec-
Q 000177 1516 TFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFE- 1593 (1922)
Q Consensus 1516 aFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~- 1593 (1922)
.|.++.. ++.+--..+.|.-|+..+++. ..+. +.+.+.++. ... .+..|+++..+ +.+++..+ +..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~-~~d-~~g~Lv~~~~g-~~~~~~~~--~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGA-LID-AGGRLIACEHG-VRLLDPDT--GGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccce-eec-CCCeEEEEccc-cEEEeccC--CceeEEecc
Confidence 4666665 566677788899999876643 2232 122334441 233 33444444433 45566544 32222221
Q ss_pred ---c-----ceeEEEcCCCCEEEEeec-----CC---CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC
Q 000177 1594 ---G-----CKAARFSNSGNLFAALPT-----ET---SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1594 ---g-----h~sVaFSPDG~~LaSgS~-----~S---~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
+ -+.+...|+|.+.++... .. .-+.++.+|. .+..+..+.+ .-...+.++||||++
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-------~~~~~NGla~SpDg~ 175 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-------DLTIPNGLAFSPDGK 175 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-------cEEecCceEECCCCC
Confidence 1 267889999998777533 00 1133333343 4454444430 011223399999997
Q ss_pred eEe-ecc---EEEEcCC----Cc---c-eeee-ccCCCce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCC
Q 000177 1658 MLL-WNG---ILWDRRN----SV---P-VHRF-DQFTDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLD 1717 (1922)
Q Consensus 1658 lLa-Sgg---rLWDlrt----gk---~-I~kf-~gh~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~ 1717 (1922)
.+. +.+ ++|...- +. . ...+ ....+.- .++...+|.+-+++. .+|+.. ++++..+.-..
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence 665 444 4443321 11 1 1111 1111222 556666666553221 256666 77777776442
Q ss_pred c--eeEEE-ccCCCEEEEE
Q 000177 1718 Q--TTITF-NARGDVIYAI 1733 (1922)
Q Consensus 1718 ~--~sVaF-SPdG~~LaSg 1733 (1922)
. ++++| .|+.+.|+..
T Consensus 255 ~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 255 KRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CCCccceEeCCCcCEEEEE
Confidence 2 45555 4456666655
No 371
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=89.63 E-value=19 Score=45.77 Aligned_cols=213 Identities=15% Similarity=0.192 Sum_probs=107.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc-------------------------------------------eeee
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP-------------------------------------------LESC 1547 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~-------------------------------------------l~tL 1547 (1922)
.|+.+.|+++..-|++|...|.|.||.+...+. ..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 589999999999999999999999986632110 0112
Q ss_pred ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceE--ecc----------ceeEEEcC-----CC---CE
Q 000177 1548 TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHS--FEG----------CKAARFSN-----SG---NL 1606 (1922)
Q Consensus 1548 ~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~t--f~g----------h~sVaFSP-----DG---~~ 1606 (1922)
....++|+++ ..|.=| +++.+ .+|.+.|.|++. ...++. +.. ++++.|.. |+ -.
T Consensus 83 ~~~~g~vtal--~~S~iG-Fvaigy~~G~l~viD~RG--PavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 83 DAKQGPVTAL--KNSDIG-FVAIGYESGSLVVIDLRG--PAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp ---S-SEEEE--EE-BTS-EEEEEETTSEEEEEETTT--TEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eccCCcEeEE--ecCCCc-EEEEEecCCcEEEEECCC--CeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 3346788888 566444 66554 699999999986 333332 111 24677753 23 25
Q ss_pred EEEeecCCCCCeEEEEECC--C-CceeeeeccccccccCCCCcceEEEEcCC-C--------------------CeEeec
Q 000177 1607 FAALPTETSDRGILLYDIQ--T-YQLEAKLSDTSVNLTGRGHAYSQIHFSPS-D--------------------TMLLWN 1662 (1922)
Q Consensus 1607 LaSgS~~S~DgtIrIWDlr--T-gk~i~tL~d~s~~~~~~gh~~~vVaFSPd-G--------------------~lLaSg 1662 (1922)
+++| +..|.+.+|.+. . +.....+.... ....+....+..|+.+ | .+++.+
T Consensus 158 L~vG---Tn~G~v~~fkIlp~~~g~f~v~~~~~~--~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 158 LLVG---TNSGNVLTFKILPSSNGRFSVQFAGAT--TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp EEEE---ETTSEEEEEEEEE-GGG-EEEEEEEEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred EEEE---eCCCCEEEEEEecCCCCceEEEEeecc--ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 5666 666999999775 1 22211121111 0001111122334221 1 134433
Q ss_pred c----EEEEcCCCcceeeeccCCCce-EEEEe-----cCCCEEEEEe-----EEEecCCCeEEEEEcCCCc------eeE
Q 000177 1663 G----ILWDRRNSVPVHRFDQFTDHG-GGGFH-----PAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ------TTI 1721 (1922)
Q Consensus 1663 g----rLWDlrtgk~I~kf~gh~~~V-sVaFS-----PdG~~LASGS-----eIWDLrTgklL~tl~gH~~------~sV 1721 (1922)
+ +++...+.+..++.....-.. .+.|- ..+..|++-. +++.+-..+.+..+.-... ...
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 3 888888887776655221112 34442 2333333332 5888888888877764332 477
Q ss_pred EEccCCCEEEEE
Q 000177 1722 TFNARGDVIYAI 1733 (1922)
Q Consensus 1722 aFSPdG~~LaSg 1733 (1922)
.|+++|+.++-.
T Consensus 313 sis~~Gdi~~~~ 324 (395)
T PF08596_consen 313 SISRNGDIFYWT 324 (395)
T ss_dssp EE-TTS-EEEE-
T ss_pred EECCCCCEEEEe
Confidence 789999977755
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=89.41 E-value=52 Score=38.90 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=108.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee--------------eccCCCCeeEEE-eeecCCCcEEEEecCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES--------------CTSHQAPVTLVQ-SHLSGETQLLLSSSSQ 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t--------------L~gHss~VtsLq-~afSpDG~lLaSSsDg 1574 (1922)
..|+.+...++-+.|++=+ |+.+.++++..-..... -......+...+ -.......+|+.....
T Consensus 36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 3499999998777665554 49999999875443321 111223344431 0122344566666677
Q ss_pred cEEEeccCCCC--C-CcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc---cCCCC
Q 000177 1575 DVHLWNASSIA--G-GPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL---TGRGH 1645 (1922)
Q Consensus 1575 tVkLWDl~t~~--g-k~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~---~~~gh 1645 (1922)
+|.+|.+.... . +....+. ...++.|. ++.++.| . .+...+.|+.++.....+....... .....
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~---~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~ 188 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVG---T-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSS 188 (275)
T ss_pred EEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEE---e-CCceEEEecCCCCceEEeCccCCcchhhhcccC
Confidence 99998887521 1 2333332 23778888 5666665 3 3447899999877655442111000 00011
Q ss_pred cceE-EEEcCCCCeEeecc---EEEEcCCCccee--eeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEcC
Q 000177 1646 AYSQ-IHFSPSDTMLLWNG---ILWDRRNSVPVH--RFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1646 ~~~v-VaFSPdG~lLaSgg---rLWDlrtgk~I~--kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~g 1715 (1922)
..+. +.--+++.+|++.. .+.|. .|++.+ .+.-...+.++++.. .||+.-+ +||++.++++++++..
T Consensus 189 ~~~~~~~~~~~~e~Ll~~~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~~~--pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 189 SKPLGIFQLSDNEFLLCYDNIGVFVNK-NGEPSRKSTIQWSSAPQSVAYSS--PYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CCceEEEEeCCceEEEEecceEEEEcC-CCCcCcccEEEcCCchhEEEEEC--CEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 1122 22334467776544 44443 454443 222222233555533 4666555 6999999999999986
Q ss_pred CCc
Q 000177 1716 LDQ 1718 (1922)
Q Consensus 1716 H~~ 1718 (1922)
...
T Consensus 266 ~~~ 268 (275)
T PF00780_consen 266 PNI 268 (275)
T ss_pred CCE
Confidence 554
No 373
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.37 E-value=20 Score=45.84 Aligned_cols=204 Identities=10% Similarity=0.138 Sum_probs=96.1
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC----Cceeeecc---CC--C--CeeEEEeeecCCCcEEEEe--c-C----CcEEEec
Q 000177 1520 DSSHIAVGS-HTKELKIFDSNSS----SPLESCTS---HQ--A--PVTLVQSHLSGETQLLLSS--S-S----QDVHLWN 1580 (1922)
Q Consensus 1520 DG~lLASGS-~DGtIkIWDl~tg----k~l~tL~g---Hs--s--~VtsLq~afSpDG~lLaSS--s-D----gtVkLWD 1580 (1922)
+-++|+..+ ..+.|.|+|+.+. +..+++.. +. + .-..+ .--|+|.+++|+ + + |.+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~--Hclp~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTV--HCLPDGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEE--EE-SS--EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCcee--eecCCccEEEEeccCCCCCCCCcEEEEc
Confidence 345666666 7789999998743 23333322 11 0 11111 224789888873 2 2 3477888
Q ss_pred cCCCCCCcceEecc-------ceeEEEcCCCCEEEEeecCC-----------------CCCeEEEEECCCCceeeeeccc
Q 000177 1581 ASSIAGGPMHSFEG-------CKAARFSNSGNLFAALPTET-----------------SDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1581 l~t~~gk~l~tf~g-------h~sVaFSPDG~~LaSgS~~S-----------------~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
-++ ...+..++. ...+-|.|..+.+++...+. ..+++++||+.+.+.++++.
T Consensus 164 ~~t--f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id-- 239 (461)
T PF05694_consen 164 GET--FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID-- 239 (461)
T ss_dssp TTT----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE--
T ss_pred Ccc--ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe--
Confidence 776 555555543 25677888888888874432 45789999999999999987
Q ss_pred cccccCCCCcceE-EEE--cCCCCeEeecc----EEEEc---CCCc----ceeeecc-----------------CCCce-
Q 000177 1637 SVNLTGRGHAYSQ-IHF--SPSDTMLLWNG----ILWDR---RNSV----PVHRFDQ-----------------FTDHG- 1684 (1922)
Q Consensus 1637 s~~~~~~gh~~~v-VaF--SPdG~lLaSgg----rLWDl---rtgk----~I~kf~g-----------------h~~~V- 1684 (1922)
.+..+..+. +.| .|+..+=+++. .||-+ ..++ .+-.+.. ...-+
T Consensus 240 ----Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 240 ----LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp ----S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred ----cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 112233232 444 45555544333 34433 2221 1111111 01223
Q ss_pred EEEEecCCCEEEEEe------EEEecCC---CeEEEEEc-CC-------------Cc----eeEEEccCCCEEEEE
Q 000177 1685 GGGFHPAGNEVIINS------EVWDLRK---FRLLRSVP-SL-------------DQ----TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1685 sVaFSPdG~~LASGS------eIWDLrT---gklL~tl~-gH-------------~~----~sVaFSPdG~~LaSg 1733 (1922)
.+..|.|.++|..++ +.||+.. -+++..+. |- .. .-|..|-||+.||..
T Consensus 316 DI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 316 DILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred eEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 789999999999988 5677754 34444332 10 00 578899999999977
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.98 E-value=4.1 Score=48.96 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=94.1
Q ss_pred EEEcCCCCeEeecc-------EEEEcCCCcceeeeccCCCce---EEEEecCCCEEEEEe----------EEEecCC-Ce
Q 000177 1650 IHFSPSDTMLLWNG-------ILWDRRNSVPVHRFDQFTDHG---GGGFHPAGNEVIINS----------EVWDLRK-FR 1708 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-------rLWDlrtgk~I~kf~gh~~~V---sVaFSPdG~~LASGS----------eIWDLrT-gk 1708 (1922)
++|+|.-..-+.-. .++|....+.+.++...++.- ..+|||+|.+|...- -|||.+. ++
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 77888765544222 899999888766665444432 579999999998765 2888874 45
Q ss_pred EEEEEcCCCc--eeEEEccCCCEEEEEEc--cCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC-----CceE
Q 000177 1709 LLRSVPSLDQ--TTITFNARGDVIYAILR--RNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD-----RCVL 1779 (1922)
Q Consensus 1709 lL~tl~gH~~--~sVaFSPdG~~LaSgs~--~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk-----r~I~ 1779 (1922)
.+..++.|.. ..+.|.+||+.|+.+.. +-+.++-. ++-.-..+..++-.++..+...|...... -.|.
T Consensus 153 rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR---~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 153 RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGR---TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred eecccccCCcCcceeEEecCCcEEEEeCCceecccccCc---cccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 6667777665 79999999999998722 01101110 00011225678888888887777666553 2488
Q ss_pred EEEEcCCCceEEEEe
Q 000177 1780 DFATERTDSFVGLIT 1794 (1922)
Q Consensus 1780 dLa~SPdds~LAVVe 1794 (1922)
.++..++++...-..
T Consensus 230 Hld~g~dgtvwfgcQ 244 (366)
T COG3490 230 HLDIGRDGTVWFGCQ 244 (366)
T ss_pred eeeeCCCCcEEEEEE
Confidence 889999998665444
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=88.68 E-value=9 Score=51.12 Aligned_cols=138 Identities=11% Similarity=0.080 Sum_probs=74.2
Q ss_pred CCEEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCC-------
Q 000177 1510 ALLTCITFLGDSSHIAVGS------HTK--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQ------- 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS------~DG--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDg------- 1574 (1922)
..+...++||||+.++.-. .|. .|.+++. .+.......+. ..+.- .|+|||..|.+-.|+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~P--sWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRP--SWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCc--eECCCCCceEEEecCcceEEEe
Confidence 4578899999999876655 344 4444454 22222222332 24444 889998877664322
Q ss_pred ------cEEEeccCCCCCCcceEec-cceeEEEcCCCCEEEEeecCCCCCeEEE---EECCCCceeeeeccccccccCCC
Q 000177 1575 ------DVHLWNASSIAGGPMHSFE-GCKAARFSNSGNLFAALPTETSDRGILL---YDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1575 ------tVkLWDl~t~~gk~l~tf~-gh~sVaFSPDG~~LaSgS~~S~DgtIrI---WDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
.+.+.++.. +.....+. .+..+.|+|||.+++... ++.|.+ -....|. ..+..+.......+
T Consensus 425 ~~~~~gql~~~~vd~--ge~~~~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~ 496 (591)
T PRK13616 425 RDPATGQLARTPVDA--SAVASRVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQ--YALTNPREVGPGLG 496 (591)
T ss_pred ccCCCceEEEEeccC--chhhhccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCc--eeecccEEeecccC
Confidence 233334433 22222333 368899999999998862 356666 3333443 22221110111111
Q ss_pred CcceEEEEcCCCCeEe
Q 000177 1645 HAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLa 1660 (1922)
.....+.|.+++.+++
T Consensus 497 ~~~~~l~W~~~~~L~V 512 (591)
T PRK13616 497 DTAVSLDWRTGDSLVV 512 (591)
T ss_pred CccccceEecCCEEEE
Confidence 1223378988888665
No 376
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=88.54 E-value=37 Score=43.47 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=21.3
Q ss_pred ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1595 CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1595 h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
..++.|..+.+.++. ..||++++||+.
T Consensus 83 iv~~~wt~~e~LvvV----~~dG~v~vy~~~ 109 (410)
T PF04841_consen 83 IVGMGWTDDEELVVV----QSDGTVRVYDLF 109 (410)
T ss_pred EEEEEECCCCeEEEE----EcCCEEEEEeCC
Confidence 366789887666655 678999999997
No 377
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=88.09 E-value=5 Score=52.18 Aligned_cols=139 Identities=12% Similarity=0.194 Sum_probs=83.7
Q ss_pred CCCeeEEEeeecCCCcEEEEe---cCCcEEEeccCCCCCCcceEeccceeEEEcCC----CCEEEEeecCCCCCeEEEEE
Q 000177 1551 QAPVTLVQSHLSGETQLLLSS---SSQDVHLWNASSIAGGPMHSFEGCKAARFSNS----GNLFAALPTETSDRGILLYD 1623 (1922)
Q Consensus 1551 ss~VtsLq~afSpDG~lLaSS---sDgtVkLWDl~t~~gk~l~tf~gh~sVaFSPD----G~~LaSgS~~S~DgtIrIWD 1623 (1922)
-.+|..+ +|....+.++|. ..|.+++=|- +.+..|+.+..+.|.|- --.+++. ...+.|.||-
T Consensus 19 iHPvhGl--aWTDGkqVvLT~L~l~~gE~kfGds-----~viGqFEhV~GlsW~P~~~~~~paLLAV---QHkkhVtVWq 88 (671)
T PF15390_consen 19 IHPVHGL--AWTDGKQVVLTDLQLHNGEPKFGDS-----KVIGQFEHVHGLSWAPPCTADTPALLAV---QHKKHVTVWQ 88 (671)
T ss_pred hccccce--EecCCCEEEEEeeeeeCCccccCCc-----cEeeccceeeeeeecCcccCCCCceEEE---eccceEEEEE
Confidence 4678899 676555555664 3666665543 35788888899999994 2234444 5678899998
Q ss_pred CC-----CCceeeeeccccccccCCCCcceE----EEEcCCCCeEee--cc---EEEEcCCCcceeeec-cCCCce-EEE
Q 000177 1624 IQ-----TYQLEAKLSDTSVNLTGRGHAYSQ----IHFSPSDTMLLW--NG---ILWDRRNSVPVHRFD-QFTDHG-GGG 1687 (1922)
Q Consensus 1624 lr-----Tgk~i~tL~d~s~~~~~~gh~~~v----VaFSPdG~lLaS--gg---rLWDlrtgk~I~kf~-gh~~~V-sVa 1687 (1922)
+. +.+.+.+..+. .+...++ +.|+|....|+. .- .+++++....--+.+ ...+.| |.+
T Consensus 89 L~~s~~e~~K~l~sQtcE------i~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCAC 162 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCE------IREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCAC 162 (671)
T ss_pred eccCccccccceeeeeee------ccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEE
Confidence 86 22222221100 0111122 789999987763 32 777877543222222 333445 999
Q ss_pred EecCCCEEEEE--e----EEEecC
Q 000177 1688 FHPAGNEVIIN--S----EVWDLR 1705 (1922)
Q Consensus 1688 FSPdG~~LASG--S----eIWDLr 1705 (1922)
|.+||+.|+.+ + -|||-.
T Consensus 163 WT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 163 WTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ecCcCCEEEEEeCCeEEEEEecCc
Confidence 99999976554 3 278743
No 378
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=87.89 E-value=0.52 Score=64.15 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=18.8
Q ss_pred HhhcCChhhHHHHHHHHHHHHhcCC
Q 000177 648 RVCALPTDVVHQLVELAIQLLECTQ 672 (1922)
Q Consensus 648 RvC~lp~~vl~~lV~yaLwLLecsh 672 (1922)
++|.+..+++....+-+|..=.|+|
T Consensus 184 ~~~~~~~~lv~~f~k~~l~~kkC~~ 208 (1640)
T KOG0262|consen 184 NSTELKKKLVTAFLKNALSRKKCPR 208 (1640)
T ss_pred hhHHHHHHHHHHHHHHhhccccCCc
Confidence 4667777888888888887667765
No 379
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.37 E-value=63 Score=44.68 Aligned_cols=111 Identities=11% Similarity=0.078 Sum_probs=65.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccCCC--------CeeEEEeeec----------------CCCcEEEEecCCcE
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSHQA--------PVTLVQSHLS----------------GETQLLLSSSSQDV 1576 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss--------~VtsLq~afS----------------pDG~lLaSSsDgtV 1576 (1922)
+..|+.++.++.|.-.|..+|+.+-.+.-+.. ....+.+ +. .++++++.+.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay-~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSY-YDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEE-ecCCcccccccccccccccCCEEEEecCCCeE
Confidence 55677777778888888888877665532211 0122211 11 12345555668888
Q ss_pred EEeccCCCCCCcceEeccce----------------eEEEcC--CCCEEEEeecCC-------CCCeEEEEECCCCceee
Q 000177 1577 HLWNASSIAGGPMHSFEGCK----------------AARFSN--SGNLFAALPTET-------SDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh~----------------sVaFSP--DG~~LaSgS~~S-------~DgtIrIWDlrTgk~i~ 1631 (1922)
.-.|..+ ++.+..|...- .+.-.| .+..++.|+... .+|.|+-||.+||+.+.
T Consensus 273 iALDA~T--Gk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 273 IALDADT--GKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEEECCC--CCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 8888887 77776653211 111222 244566653211 26889999999999988
Q ss_pred eec
Q 000177 1632 KLS 1634 (1922)
Q Consensus 1632 tL~ 1634 (1922)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 875
No 380
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=85.94 E-value=29 Score=44.53 Aligned_cols=183 Identities=15% Similarity=0.216 Sum_probs=87.3
Q ss_pred CCCEEEEeecCCCCCeEEEEECCC----CceeeeeccccccccCCCCcceE-EEEcCCCCeEeecc-----------EEE
Q 000177 1603 SGNLFAALPTETSDRGILLYDIQT----YQLEAKLSDTSVNLTGRGHAYSQ-IHFSPSDTMLLWNG-----------ILW 1666 (1922)
Q Consensus 1603 DG~~LaSgS~~S~DgtIrIWDlrT----gk~i~tL~d~s~~~~~~gh~~~v-VaFSPdG~lLaSgg-----------rLW 1666 (1922)
..++|+..+ -..+.|.|+|+.+ .+..+++.+..+.. ..+...+- +..-|+|++++++- .+.
T Consensus 86 ~Rr~Li~Pg--L~SsrIyviD~~~dPr~P~l~KvIe~~ev~~-k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 86 ERRYLILPG--LRSSRIYVIDTKTDPRKPRLHKVIEPEEVFE-KTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -S-EEEEEB--TTT--EEEEE--S-TTS-EEEEEE-HHHHHH-HH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred cCCcEEeee--eccCcEEEEECCCCCCCCceEeeeCHHHHHh-hcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence 356777763 3557899999984 34444444211110 01222222 66678898888542 788
Q ss_pred EcCCCcceeeeccCCCc--e--EEEEecCCCEEEEEe-------------------------EEEecCCCeEEEEEcCCC
Q 000177 1667 DRRNSVPVHRFDQFTDH--G--GGGFHPAGNEVIINS-------------------------EVWDLRKFRLLRSVPSLD 1717 (1922)
Q Consensus 1667 Dlrtgk~I~kf~gh~~~--V--sVaFSPdG~~LASGS-------------------------eIWDLrTgklL~tl~gH~ 1717 (1922)
|-.+...+..+...... . ..-|+|..+.++|.+ .+||+.+.++++++.--.
T Consensus 163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp -TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 87777777777654332 2 678899999999887 299999999999997332
Q ss_pred c----eeEEE--ccCCCEEEEEE--ccCchhhhhhhcccccccCCcceEEEEe--cCCCceeeeecc-------------
Q 000177 1718 Q----TTITF--NARGDVIYAIL--RRNLEDVMSAVHTRRVKHPLFAAFRTVD--AINYSDIATIPV------------- 1774 (1922)
Q Consensus 1718 ~----~sVaF--SPdG~~LaSgs--~~d~~dv~s~lh~rr~ksp~~ssFrt~D--a~dys~IaTidv------------- 1774 (1922)
. -.|.| +|+..+=+++. ..+. |+.+. ...|.--..+++
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i-------------------~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~m 303 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSI-------------------WRFYKDDDGEWAAEKVIDIPAKKVEGWILPEM 303 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEE-------------------EEEEE-ETTEEEEEEEEEE--EE--SS---GG
T ss_pred CCCceEEEEecCCCCccceEEEEeccceE-------------------EEEEEcCCCCeeeeEEEECCCcccCccccccc
Confidence 2 34555 55555555442 1111 11111 111211111111
Q ss_pred -------CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1775 -------DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1775 -------kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
..-|.|+..|.+|++|-+.. -..+.+|.|+|..
T Consensus 304 l~~~~~~P~LitDI~iSlDDrfLYvs~-----W~~GdvrqYDISD 343 (461)
T PF05694_consen 304 LKPFGAVPPLITDILISLDDRFLYVSN-----WLHGDVRQYDISD 343 (461)
T ss_dssp GGGG-EE------EEE-TTS-EEEEEE-----TTTTEEEEEE-SS
T ss_pred ccccccCCCceEeEEEccCCCEEEEEc-----ccCCcEEEEecCC
Confidence 23389999999999999875 2346788887743
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=85.92 E-value=1.8 Score=38.84 Aligned_cols=33 Identities=15% Similarity=0.375 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP 1543 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~ 1543 (1922)
..|.+++|+|...+||.|+.+|.|.||.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 57999999999999999999999999998 4543
No 382
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.81 E-value=64 Score=40.72 Aligned_cols=187 Identities=13% Similarity=0.076 Sum_probs=94.6
Q ss_pred EEEEcCCCCEEEEEeCCC-----------cEEEEECCCCCce--eeeccCCCCe--eEEEeeecCCCcEEEE-e-c--C-
Q 000177 1514 CITFLGDSSHIAVGSHTK-----------ELKIFDSNSSSPL--ESCTSHQAPV--TLVQSHLSGETQLLLS-S-S--S- 1573 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DG-----------tIkIWDl~tgk~l--~tL~gHss~V--tsLq~afSpDG~lLaS-S-s--D- 1573 (1922)
.+.|.+|++.|+....+. .|+.|.+.+.... ..|......+ ..+ ..++|+++|+. + + +
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~--~~s~d~~~l~i~~~~~~~~ 251 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSV--SRSKDGRYLFISSSSGTSE 251 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEE--EE-TTSSEEEEEEESSSSE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEE--EecCcccEEEEEEEccccC
Confidence 499999998776665443 3788888777543 4555544443 455 78999998875 2 2 4
Q ss_pred CcEEEeccCCC---CCCcceEe---ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce---eeeeccccccccCCC
Q 000177 1574 QDVHLWNASSI---AGGPMHSF---EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL---EAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1574 gtVkLWDl~t~---~gk~l~tf---~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~---i~tL~d~s~~~~~~g 1644 (1922)
..+.+.++... ...+.... .++....-+..+.+++.+..+...+.|...++.+... ...+. . +.
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-----~--~~ 324 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-----P--ED 324 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---------S
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-----C--CC
Confidence 45777787752 11222222 2333333333455555554455667888888887653 11222 0 11
Q ss_pred CcceEEEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCc-e-EEEEecCCCEEEEE--e-----E--EEecC
Q 000177 1645 HAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDH-G-GGGFHPAGNEVIIN--S-----E--VWDLR 1705 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~-V-sVaFSPdG~~LASG--S-----e--IWDLr 1705 (1922)
.......+...+.+|+... ++||+..+............ + .+...++++.+... | . .||+.
T Consensus 325 ~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~ 404 (414)
T PF02897_consen 325 EDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLA 404 (414)
T ss_dssp SSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETT
T ss_pred CceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 2223345555555555322 78998834444334333322 3 44445555543322 2 2 45666
Q ss_pred CCeE
Q 000177 1706 KFRL 1709 (1922)
Q Consensus 1706 Tgkl 1709 (1922)
+++.
T Consensus 405 t~~~ 408 (414)
T PF02897_consen 405 TGEL 408 (414)
T ss_dssp TTCE
T ss_pred CCCE
Confidence 6654
No 383
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.89 E-value=58 Score=39.21 Aligned_cols=69 Identities=10% Similarity=0.066 Sum_probs=51.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccC-CCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEec
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSH-QAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFE 1593 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gH-ss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~ 1593 (1922)
-|++++.|.+.|.+++.++.+|.....+..- +-.+.. ...+++.++..++ |++....|.++ ..++...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a---~~d~~~glIycgshd~~~yalD~~~--~~cVyksk 132 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA---QCDFDGGLIYCGSHDGNFYALDPKT--YGCVYKSK 132 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce---EEcCCCceEEEecCCCcEEEecccc--cceEEecc
Confidence 4778999999999999999999776665321 222222 3456888888854 99999999988 66776654
No 384
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=84.86 E-value=1.9e+02 Score=40.57 Aligned_cols=272 Identities=15% Similarity=0.132 Sum_probs=128.6
Q ss_pred CCEEEEEEcCC--C-C---EEEEEeCCCcEEEEECCCCCceee---eccC--CCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1510 ALLTCITFLGD--S-S---HIAVGSHTKELKIFDSNSSSPLES---CTSH--QAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1510 ~~Vt~LaFSPD--G-~---lLASGS~DGtIkIWDl~tgk~l~t---L~gH--ss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
..|.|+.++|- + + +++.|.++..+.+.-....-++.+ +.+. ...|.-. .+-.|..+|.++ .||.+.
T Consensus 531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~--~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLT--TFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeE--EeeccceEEEEEcCCceEE
Confidence 66999999983 2 2 799999988876654432222211 1111 1122222 444556777775 599887
Q ss_pred EeccCCCCCCc---ceEeccc---eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEE
Q 000177 1578 LWNASSIAGGP---MHSFEGC---KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1578 LWDl~t~~gk~---l~tf~gh---~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
-|.+....++. ....-|. .--.|+..+ ..++++ .|+-..+|-.+..-+...+. . ......+
T Consensus 609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~----sdrP~viY~~n~kLv~spls---~-----kev~~~c 676 (1096)
T KOG1897|consen 609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL----SDRPTVIYSSNGKLVYSPLS---L-----KEVNHMC 676 (1096)
T ss_pred EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe----CCCCEEEEecCCcEEEeccc---h-----HHhhhhc
Confidence 66554421221 1111121 122344433 344443 35555666554322222221 0 0111113
Q ss_pred EEcCC----CCeEeecc--EEEEcCCCc--ceeeeccCCCceEEEEecCCCEEEEEe-------------------EEEe
Q 000177 1651 HFSPS----DTMLLWNG--ILWDRRNSV--PVHRFDQFTDHGGGGFHPAGNEVIINS-------------------EVWD 1703 (1922)
Q Consensus 1651 aFSPd----G~lLaSgg--rLWDlrtgk--~I~kf~gh~~~VsVaFSPdG~~LASGS-------------------eIWD 1703 (1922)
.|+.+ +-.+++++ ++.-+..-+ .+++..-+...-.++|++....+.+.+ +++|
T Consensus 677 ~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD 756 (1096)
T KOG1897|consen 677 PFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLD 756 (1096)
T ss_pred ccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEec
Confidence 33322 11222333 333333211 233333333333556665433333333 4777
Q ss_pred cCCCeEEEEEcCCCc------eeEEEccC-CCEEEEEEccCchhhhhhhcccccccCCcceEEEE---ecCCCceeeeec
Q 000177 1704 LRKFRLLRSVPSLDQ------TTITFNAR-GDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTV---DAINYSDIATIP 1773 (1922)
Q Consensus 1704 LrTgklL~tl~gH~~------~sVaFSPd-G~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~---Da~dys~IaTid 1773 (1922)
-+|++.+...+-... .++.|..+ +.+++.|..-...+ . ..|....+.++ +....+.++...
T Consensus 757 ~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pd--------e-~ep~~GRIivfe~~e~~~L~~v~e~~ 827 (1096)
T KOG1897|consen 757 QNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPD--------E-NEPVNGRIIVFEFEELNSLELVAETV 827 (1096)
T ss_pred CCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccC--------C-CCcccceEEEEEEecCCceeeeeeee
Confidence 777776654442211 45668777 66666663211000 0 11222333333 334455566666
Q ss_pred cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1774 VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1774 vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
++..++++. --+|+++|.+. +.+|+|+.+..
T Consensus 828 v~Gav~aL~-~fngkllA~In--------~~vrLye~t~~ 858 (1096)
T KOG1897|consen 828 VKGAVYALV-EFNGKLLAGIN--------QSVRLYEWTTE 858 (1096)
T ss_pred eccceeehh-hhCCeEEEecC--------cEEEEEEcccc
Confidence 676666654 23677777552 67889888665
No 385
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=84.67 E-value=11 Score=50.41 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=73.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCC-----
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASS----- 1583 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t----- 1583 (1922)
..+-+.-|.-++..++-+...++.|||...+.....-. ...+.|.++.|...|+++.+++ |-.+.|.||.-..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34445555556655555556689999998887543322 4578999999999999998887 7799998875421
Q ss_pred --CCCCcceEe-----cc--ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1584 --IAGGPMHSF-----EG--CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1584 --~~gk~l~tf-----~g--h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
+...++..+ .. +....|.++|..++++ ++.+.|||-.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-----GNqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-----GNQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-----CCEEEEECCC
Confidence 112233332 11 2568899999887765 2668888753
No 386
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=84.50 E-value=0.58 Score=63.30 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=12.7
Q ss_pred HhhhcccHHHHHHHHhhh
Q 000177 695 AFDAQDGLQKLLGLLNDA 712 (1922)
Q Consensus 695 ~FD~~dGLrkL~N~i~~l 712 (1922)
.||.-.||..|.++|+-+
T Consensus 141 Vf~~ke~l~~l~~~L~~l 158 (1128)
T KOG2051|consen 141 VFDDKEGLSPLRKVLSIL 158 (1128)
T ss_pred eeeccchhhhHHHHHHHH
Confidence 357777777777777755
No 387
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=84.07 E-value=49 Score=43.23 Aligned_cols=100 Identities=9% Similarity=0.096 Sum_probs=58.9
Q ss_pred CCCcEEEEECCCCCceeeeccCCC--------------------CeeEEEeeecCC-CcEEEEecCC-------------
Q 000177 1529 HTKELKIFDSNSSSPLESCTSHQA--------------------PVTLVQSHLSGE-TQLLLSSSSQ------------- 1574 (1922)
Q Consensus 1529 ~DGtIkIWDl~tgk~l~tL~gHss--------------------~VtsLq~afSpD-G~lLaSSsDg------------- 1574 (1922)
.+|.|.-+|..+|+.+-.+..... .|++- ..+.+. +.+++.+.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~-pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWAS-PTYDPKTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCC-eeEeCCCCEEEEECCCCCCCccCCccCCCC
Confidence 367889999999988766643211 01110 123333 3344444443
Q ss_pred -----cEEEeccCCCCCCcceEeccc----e------eEEEc----CCCC---EEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1575 -----DVHLWNASSIAGGPMHSFEGC----K------AARFS----NSGN---LFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1575 -----tVkLWDl~t~~gk~l~tf~gh----~------sVaFS----PDG~---~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
.|.-+|..+ ++.+.+++.. + ...+. -++. .++.+ +.+|.+..+|.++|+.+..
T Consensus 252 ~~~~~~l~Ald~~t--G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g---~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 252 NLYTDSIVALDADT--GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA---PKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred CCceeeEEEEcCCC--CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE---CCCceEEEEECCCCcEeeE
Confidence 688888887 7777665421 0 11111 1232 45555 7789999999999998876
Q ss_pred ec
Q 000177 1633 LS 1634 (1922)
Q Consensus 1633 L~ 1634 (1922)
..
T Consensus 327 ~~ 328 (488)
T cd00216 327 RP 328 (488)
T ss_pred eE
Confidence 64
No 388
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.06 E-value=17 Score=45.59 Aligned_cols=142 Identities=10% Similarity=0.124 Sum_probs=77.2
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--CCc--eeeeccCCCCeeEEEeeecCCCcEEEEecC
Q 000177 1510 ALLTCITFLGDSSHIAVGS-----------HTK-ELKIFDSNS--SSP--LESCTSHQAPVTLVQSHLSGETQLLLSSSS 1573 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS-----------~DG-tIkIWDl~t--gk~--l~tL~gHss~VtsLq~afSpDG~lLaSSsD 1573 (1922)
.....++|.++|+++++-. ..+ .|.+++-.+ |+. ...|-..-...+.| .+.+++ +++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi--~~~~~G-lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGL--AVAVGG-VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccce--eEecCC-EEEeCCC
Confidence 3457889999999777643 233 677776432 332 23443233345777 778888 6666545
Q ss_pred CcEEEeccCCC---CCCc--c-eEecc------c--eeEEEcCCCCEEEEeecCC----------------CCCeEEEEE
Q 000177 1574 QDVHLWNASSI---AGGP--M-HSFEG------C--KAARFSNSGNLFAALPTET----------------SDRGILLYD 1623 (1922)
Q Consensus 1574 gtVkLWDl~t~---~gk~--l-~tf~g------h--~sVaFSPDG~~LaSgS~~S----------------~DgtIrIWD 1623 (1922)
...++.|.... .++. + ..|.. | +.+.|.|||.+.++.+..+ ..+.|.-+|
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43344455321 0011 1 11211 2 5789999998777653110 013444555
Q ss_pred CCCCceeeeeccccccccCCCCcceE-EEEcCCCCeEeecc
Q 000177 1624 IQTYQLEAKLSDTSVNLTGRGHAYSQ-IHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1624 lrTgk~i~tL~d~s~~~~~~gh~~~v-VaFSPdG~lLaSgg 1663 (1922)
..+++. ..+. .++.... ++|+|+|+++++..
T Consensus 171 pdg~~~-e~~a--------~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVA--------HGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEe--------cCcCCCccceECCCCCEEEEcc
Confidence 544332 2221 2444333 89999998888765
No 389
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=84.00 E-value=0.84 Score=59.80 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 000177 749 IAYHTCVALRQYFRAHLLLLVD 770 (1922)
Q Consensus 749 ~~~h~c~aLR~Yf~aHL~~~v~ 770 (1922)
-++-+..-.+.||+.-+.--++
T Consensus 149 sa~~s~~vm~k~~~~~~~~aiD 170 (960)
T KOG1189|consen 149 SAAASSAVMNKYLVDELVEAID 170 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444445566655554444
No 390
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=83.59 E-value=0.81 Score=59.91 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=4.7
Q ss_pred hhccccccC
Q 000177 712 AASVRSGVN 720 (1922)
Q Consensus 712 l~~l~~~~~ 720 (1922)
-||+.||++
T Consensus 207 ~PIiqSGg~ 215 (960)
T KOG1189|consen 207 PPIIQSGGK 215 (960)
T ss_pred ChhhhcCCc
Confidence 455555554
No 391
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.53 E-value=0.52 Score=63.43 Aligned_cols=12 Identities=0% Similarity=-0.047 Sum_probs=4.6
Q ss_pred HHHHHHHhccCC
Q 000177 1095 KKLSELIRDSGG 1106 (1922)
Q Consensus 1095 ~~lq~Lmr~p~l 1106 (1922)
+++.-.+-.-+.
T Consensus 457 ~~mE~flv~hVf 468 (1010)
T KOG1991|consen 457 SQMEYFLVNHVF 468 (1010)
T ss_pred HHHHHHHHHHhh
Confidence 344433333333
No 392
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.11 E-value=10 Score=46.86 Aligned_cols=107 Identities=13% Similarity=0.206 Sum_probs=54.8
Q ss_pred eeEEEeeecCCCcEEEEecCCcEEEeccCCCCC-CcceEecc--------ceeEEEcCC----CCEEEEeecC---CCC-
Q 000177 1554 VTLVQSHLSGETQLLLSSSSQDVHLWNASSIAG-GPMHSFEG--------CKAARFSNS----GNLFAALPTE---TSD- 1616 (1922)
Q Consensus 1554 VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~g-k~l~tf~g--------h~sVaFSPD----G~~LaSgS~~---S~D- 1616 (1922)
-+.| +|.|||+++++-..|.|++++-.. .. ..+..+.. ...++|+|+ +..+++.+.. ...
T Consensus 4 P~~~--a~~pdG~l~v~e~~G~i~~~~~~g-~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSM--AFLPDGRLLVAERSGRIWVVDKDG-SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEE--EEETTSCEEEEETTTEEEEEETTT-EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEE--EEeCCCcEEEEeCCceEEEEeCCC-cCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3567 889999999998899999999322 11 11222221 267899994 4444433210 111
Q ss_pred -CeEEEEECCCC-ce---eeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1617 -RGILLYDIQTY-QL---EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1617 -gtIrIWDlrTg-k~---i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
..|.-|....+ .. ...+-..........|....+.|.|+|.++++.|
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 23333433322 11 1111100011112467778899999998888666
No 393
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=82.83 E-value=0.77 Score=61.14 Aligned_cols=6 Identities=0% Similarity=0.490 Sum_probs=2.9
Q ss_pred eEEEEE
Q 000177 1804 SARIYE 1809 (1922)
Q Consensus 1804 sVRLyE 1809 (1922)
.|.+|+
T Consensus 98 ~v~v~d 103 (622)
T PF02724_consen 98 QVIVFD 103 (622)
T ss_pred cEEEEE
Confidence 445553
No 394
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=82.01 E-value=57 Score=41.69 Aligned_cols=190 Identities=14% Similarity=0.141 Sum_probs=94.6
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee--ecc------CCCCeeEEEee---ecCCC
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES--CTS------HQAPVTLVQSH---LSGET 1565 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t--L~g------Hss~VtsLq~a---fSpDG 1565 (1922)
.|.|...+.... ++|++++.|.- -+++.|..+|.+.|.|++....+.. +.. ....|++++|. +..|+
T Consensus 75 gf~P~~l~~~~~-g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQ-GPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S--SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccC-CcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 477888788777 99999999844 4999999999999999976655543 122 34568888663 33344
Q ss_pred ---cEEEEe-cCCcEEEeccCC-CCCCcceEeccc--------ee-EEEcCC---------------------CCEEEEe
Q 000177 1566 ---QLLLSS-SSQDVHLWNASS-IAGGPMHSFEGC--------KA-ARFSNS---------------------GNLFAAL 1610 (1922)
Q Consensus 1566 ---~lLaSS-sDgtVkLWDl~t-~~gk~l~tf~gh--------~s-VaFSPD---------------------G~~LaSg 1610 (1922)
-+++.| ..|.+.+|.+-- ..+.....+.+. .. ..|+.+ ..+++.+
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 244444 578888887742 112111111111 11 112110 1234443
Q ss_pred ecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEc-----CCCCeEe---ecc--EEEEcCCCcceeeeccC
Q 000177 1611 PTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFS-----PSDTMLL---WNG--ILWDRRNSVPVHRFDQF 1680 (1922)
Q Consensus 1611 S~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFS-----PdG~lLa---Sgg--rLWDlrtgk~I~kf~gh 1680 (1922)
.+..++++..-+.+..++..+. ......+.+- ..+..|+ ..| ++|.+..-+.+..++-.
T Consensus 233 ----Se~~irv~~~~~~k~~~K~~~~-------~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 233 ----SESDIRVFKPPKSKGAHKSFDD-------PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp -----SSEEEEE-TT---EEEEE-SS--------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred ----cccceEEEeCCCCcccceeecc-------ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 3567999998887766554310 0111123332 1233333 233 88888888888777654
Q ss_pred CC----ce-EEEEecCCCEEEEEe
Q 000177 1681 TD----HG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1681 ~~----~V-sVaFSPdG~~LASGS 1699 (1922)
.. .+ ...|+++|..++-.+
T Consensus 302 ~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 302 PPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp S---HHHHTT-EE-TTS-EEEE-S
T ss_pred CccccccccccEECCCCCEEEEeC
Confidence 32 12 577899999887655
No 395
>PRK10115 protease 2; Provisional
Probab=81.76 E-value=2.2e+02 Score=39.08 Aligned_cols=111 Identities=9% Similarity=0.067 Sum_probs=67.4
Q ss_pred CEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec-C-----CcEEE
Q 000177 1511 LLTCITFLGDSSHIAVGSH-----TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS-S-----QDVHL 1578 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~-----DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss-D-----gtVkL 1578 (1922)
.+..+.|||||++|+.+.. .-+|++-|+.+|..+........ ..+ .|++|++.|+. .. + ..|++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~--~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSF--VWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEE--EEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 4667889999998876543 34688999988864433221111 456 78888875544 32 2 35788
Q ss_pred eccCCCCCCcceEecc----ce-eEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1579 WNASSIAGGPMHSFEG----CK-AARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~g----h~-sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
|++.+...+-...+.+ .. .+..+.++++++..+....++.+.+|+..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 8887721122233332 12 22334478877666566677889999953
No 396
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=81.67 E-value=2.1 Score=43.12 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=75.8
Q ss_pred hhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhhhccCCCcc--cccccceeee
Q 000177 561 VLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKLLAVPRNNQ--TFFGLSSCLF 637 (1922)
Q Consensus 561 ~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~LL~vPR~s~--a~tgvS~Cly 637 (1922)
+.+.+++..++.+|..+ +..+...++..|+.|..+ ..-...|++.|+++.|+.+=+.+- ..-....||+
T Consensus 3 ~~~~~~i~~l~~~l~~~--------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~ 74 (120)
T cd00020 3 VIQAGGLPALVSLLSSS--------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALR 74 (120)
T ss_pred HHHcCChHHHHHHHHcC--------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45677888878877642 135678899999999988 788888999999999998766531 1112334444
Q ss_pred hhcchhh-HHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhh
Q 000177 638 TIGSLQG-IMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAA 685 (1922)
Q Consensus 638 ylay~~~-aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~ 685 (1922)
.|++... ..+.+.. ..++.+.+.+|...+...|.+|+.+|..
T Consensus 75 ~l~~~~~~~~~~~~~------~g~l~~l~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 75 NLAAGPEDNKLIVLE------AGGVPKLVNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHccCcHHHHHHHHH------CCChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4544442 2222221 2368888888988899999998877763
No 397
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=80.66 E-value=77 Score=47.93 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=50.4
Q ss_pred HHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHh-ccccchhhhcc
Q 000177 544 CIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFV-DRGGMQKLLAV 622 (1922)
Q Consensus 544 ~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV-~~gGlq~LL~v 622 (1922)
.|..|+.-.+.|- ..+.+.+++..+..||.. .+...--+|.+.|..|.+|..--...| +.|.|+.|+++
T Consensus 469 ~L~nLa~~ndenr--~aIieaGaIP~LV~LL~s--------~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L 538 (2102)
T PLN03200 469 LLAILTDEVDESK--WAITAAGGIPPLVQLLET--------GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL 538 (2102)
T ss_pred HHHHHHcCCHHHH--HHHHHCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH
Confidence 4555554333333 357799999998998853 222445679999999999986656666 67999998887
Q ss_pred CCC
Q 000177 623 PRN 625 (1922)
Q Consensus 623 PR~ 625 (1922)
=+.
T Consensus 539 L~s 541 (2102)
T PLN03200 539 LKN 541 (2102)
T ss_pred HhC
Confidence 654
No 398
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.43 E-value=5 Score=52.32 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=53.6
Q ss_pred CCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEec--c--c-eeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1552 APVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFE--G--C-KAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1552 s~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~--g--h-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
..|.-+ .|+|.-.+++.. .+|.|.+..++ .+.+.++. + . .+++|.|||+.|+.| -.||+|++.|+.
T Consensus 21 ~~i~~~--ewnP~~dLiA~~t~~gelli~R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg---~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRI--EWNPKMDLIATRTEKGELLIHRLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVG---FKDGTIRLHDVE 92 (665)
T ss_pred cceEEE--EEcCccchhheeccCCcEEEEEec---cceeEeccCCCCccceeeeecCCCCEEEEE---ecCCeEEEEEcc
Confidence 345556 678887888885 47766555544 23344443 1 2 589999999999999 889999999999
Q ss_pred CCceeeee
Q 000177 1626 TYQLEAKL 1633 (1922)
Q Consensus 1626 Tgk~i~tL 1633 (1922)
++..+..+
T Consensus 93 ~~~~l~~~ 100 (665)
T KOG4640|consen 93 KGGRLVSF 100 (665)
T ss_pred CCCceecc
Confidence 99887763
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.40 E-value=4.7 Score=55.19 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=61.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEeccc--
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFEGC-- 1595 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~gh-- 1595 (1922)
.+.+++.|+.-|.|-.+|+...-..... ..-.++|+++ +|+.+|.+++.| .+|.|.+||+.. +++++.+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsv--afn~dg~~l~~G~~~G~V~v~D~~~--~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSV--AFNQDGSLLLAGLGDGHVTVWDMHR--AKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceee--EecCCCceeccccCCCcEEEEEccC--CcceeeeeecCC
Confidence 4668999999999999887543111111 2236899999 899999999998 599999999997 6777666542
Q ss_pred --ee---EEEcCCCCEEEEe
Q 000177 1596 --KA---ARFSNSGNLFAAL 1610 (1922)
Q Consensus 1596 --~s---VaFSPDG~~LaSg 1610 (1922)
.+ +.|..++..++++
T Consensus 174 p~t~vi~v~~t~~nS~llt~ 193 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTS 193 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEc
Confidence 23 3344455566765
No 400
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=80.15 E-value=1.6 Score=61.51 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCcCccCC-CCCcCCC-------------cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000177 1813 RRPTEDDSDPDDAESDEEDEED-DDDVDVD-------------PLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGD 1878 (1922)
Q Consensus 1813 ~r~~EDDeDdEDedDeDDDEDD-DDDEDdD-------------~il~~~~dGDdDsDDDDddDDDDDDDeEEDDDDDDgD 1878 (1922)
..+.+..+|+++.+++--.||+ .+|..++ +..-..++..+|.++|-+-+|=|-+-.+|+.++.|.+
T Consensus 3947 d~d~q~~~de~e~~ddvg~ddeiq~d~~en~~~~~pe~e~ldlpedl~ld~~~~d~~~d~dl~dmdme~~den~eead~e 4026 (4600)
T COG5271 3947 DKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAE 4026 (4600)
T ss_pred ccchhhhcchhhhccccCcccccCcchhcccCCCCCccccCCCchhcCCccccccccccCChhhccchhcccchhhcccc
Q ss_pred CCCCCCCCCCCCCccccccCCCCcchhhhhhccCCCCcccccC
Q 000177 1879 FMMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLSSGDEEDFIG 1921 (1922)
Q Consensus 1879 ~~~ddeD~dgg~~~~ei~~d~dedDd~~~~e~~~~~de~~~~~ 1921 (1922)
.+.-..|+|.++.--.+++|..-||++|.-|+++-.+||||.+
T Consensus 4027 ~dep~~ded~~e~~~tlded~~~dd~~dla~dd~k~nedg~ee 4069 (4600)
T COG5271 4027 KDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEE 4069 (4600)
T ss_pred cCCCCCCCCccccccccchhhccchhhhhhcccccccccchhh
No 401
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=79.88 E-value=1 Score=60.10 Aligned_cols=6 Identities=33% Similarity=0.240 Sum_probs=2.5
Q ss_pred eccCCc
Q 000177 1772 IPVDRC 1777 (1922)
Q Consensus 1772 idvkr~ 1777 (1922)
+|..|+
T Consensus 81 iDshRP 86 (622)
T PF02724_consen 81 IDSHRP 86 (622)
T ss_pred EeCCCC
Confidence 334444
No 402
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.82 E-value=1 Score=60.83 Aligned_cols=11 Identities=64% Similarity=0.773 Sum_probs=5.9
Q ss_pred HHHHHHHHHhC
Q 000177 1067 LRALACRVLLG 1077 (1922)
Q Consensus 1067 iRaLAcraL~G 1077 (1922)
+||-||=+|--
T Consensus 478 Lrarac~vl~~ 488 (1010)
T KOG1991|consen 478 LRARACWVLSQ 488 (1010)
T ss_pred HHHHHHHHHHH
Confidence 55556655544
No 403
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.63 E-value=27 Score=46.59 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce-----eee-ccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL-----ESC-TSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNAS 1582 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l-----~tL-~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~ 1582 (1922)
+.+..+..|++..++|.|+..|.|.|+-++...+- ..+ ..|...|+++ +|++++..+.+|+ .|+|.+-.+.
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal--~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTAL--EWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEE--EecccccEEeecCCCceEEEEEec
Confidence 56667788999999999999999999998764321 111 3478899999 8899999999986 7888777665
Q ss_pred C
Q 000177 1583 S 1583 (1922)
Q Consensus 1583 t 1583 (1922)
+
T Consensus 155 s 155 (726)
T KOG3621|consen 155 S 155 (726)
T ss_pred h
Confidence 4
No 404
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=79.42 E-value=1.4 Score=60.30 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=14.6
Q ss_pred CCCchhhHHHHHHHHHHhC
Q 000177 1059 SPPAALDCLRALACRVLLG 1077 (1922)
Q Consensus 1059 ~Pit~aD~iRaLAcraL~G 1077 (1922)
+|--+--+|=|==||+|-|
T Consensus 565 QPTLHKPSimaHkaRVL~g 583 (1640)
T KOG0262|consen 565 QPTLHKPSIMAHKARVLPG 583 (1640)
T ss_pred CCccccchhhhhhheecCC
Confidence 6777777787778888877
No 405
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.12 E-value=1.3e+02 Score=39.94 Aligned_cols=111 Identities=11% Similarity=0.045 Sum_probs=67.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccCC-CCeeE---EE-----eeecCCCcEEEEecCCcEEEeccCCCCCCcceE
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSHQ-APVTL---VQ-----SHLSGETQLLLSSSSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gHs-s~Vts---Lq-----~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~t 1591 (1922)
+..|+.++.++.|.-+|..+|+.+-++.... ..+.. .. ..+. ++++++.+.|+.+.-.|..+ ++.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~T--Gk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKT--GKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCC--CCEEee
Confidence 5578888888899999999998876653211 11111 00 0111 45566666789998889887 777665
Q ss_pred eccc-----eeEEEcC--CCCEEEEeecC---CCCCeEEEEECCCCceeeeec
Q 000177 1592 FEGC-----KAARFSN--SGNLFAALPTE---TSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1592 f~gh-----~sVaFSP--DG~~LaSgS~~---S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
+... ..+.-+| .+..++.+... +.++.|..+|.++|+.+.++.
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 5421 1122223 13344544211 136899999999999888765
No 406
>PRK10115 protease 2; Provisional
Probab=78.93 E-value=1.9e+02 Score=39.79 Aligned_cols=95 Identities=8% Similarity=0.018 Sum_probs=55.9
Q ss_pred eeEEEcCCCCEEEEeecCC--CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------
Q 000177 1596 KAARFSNSGNLFAALPTET--SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG---------- 1663 (1922)
Q Consensus 1596 ~sVaFSPDG~~LaSgS~~S--~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---------- 1663 (1922)
..+.|+|+|++|+.+...+ ....|++.|+.+|..+...- ......++|++|++.|+...
T Consensus 130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i---------~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL---------DNVEPSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc---------cCcceEEEEeeCCCEEEEEEecCCCCCCCE
Confidence 4567899999888763322 22458888998876432211 12224499999998766332
Q ss_pred -EEEEcCCC--cceeeeccCCCce--EEEEecCCCEEEEEe
Q 000177 1664 -ILWDRRNS--VPVHRFDQFTDHG--GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1664 -rLWDlrtg--k~I~kf~gh~~~V--sVaFSPdG~~LASGS 1699 (1922)
..|++.++ +-...|....... .+..+.+++++++.+
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~ 241 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHL 241 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEE
Confidence 45666666 3333444333323 344455888877665
No 407
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=77.99 E-value=0.7 Score=61.97 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 000177 1122 QVAIELIAIV 1131 (1922)
Q Consensus 1122 ~~A~eLie~v 1131 (1922)
...-.-|.++
T Consensus 112 ~~l~~~~~~~ 121 (713)
T PF03344_consen 112 NFLSRCLARI 121 (713)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333344
No 408
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.74 E-value=39 Score=43.94 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=83.7
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcCCCC-------EEEEEeCCCcEEEEECCCC-C-ceeeeccCC----CCeeE
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLGDSS-------HIAVGSHTKELKIFDSNSS-S-PLESCTSHQ----APVTL 1556 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~-------lLASGS~DGtIkIWDl~tg-k-~l~tL~gHs----s~Vts 1556 (1922)
..++...+++.+...+-|. + |+-+.+.|+.+ .-+.|-.|..|.-||..-. + .+..-++|. ..-.|
T Consensus 358 l~klDIE~GKIVeEWk~~~-d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc 435 (644)
T KOG2395|consen 358 LYKLDIERGKIVEEWKFED-D-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSC 435 (644)
T ss_pred ceeeecccceeeeEeeccC-C-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccce
Confidence 3455667777777776676 3 77888888654 2356888999999998632 2 233334442 22344
Q ss_pred EEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1557 VQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1557 Lq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
. +-..+|.+++.|.+|.|+|||--. ......|.+ +..|..+.+|++|+++ .+.++.+.|+.
T Consensus 436 ~--aTT~sG~IvvgS~~GdIRLYdri~--~~AKTAlPgLG~~I~hVdvtadGKwil~T----c~tyLlLi~t~ 500 (644)
T KOG2395|consen 436 F--ATTESGYIVVGSLKGDIRLYDRIG--RRAKTALPGLGDAIKHVDVTADGKWILAT----CKTYLLLIDTL 500 (644)
T ss_pred e--eecCCceEEEeecCCcEEeehhhh--hhhhhcccccCCceeeEEeeccCcEEEEe----cccEEEEEEEe
Confidence 4 556788888888899999999732 222333443 5778888899998874 46778777764
No 409
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.58 E-value=5.7 Score=48.57 Aligned_cols=137 Identities=15% Similarity=0.219 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhcccc
Q 000177 536 LAQLREKYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGG 615 (1922)
Q Consensus 536 l~~~~q~~~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gG 615 (1922)
..+..--++|.-|..-+.++..-. ....+.-++.+|.. ...+.+..+.+-++..|+.||.++.+...|++.||
T Consensus 120 ~i~~~a~~iLt~Ll~~~~~~~~~~---~~~~l~~ll~~L~~----~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~ 192 (312)
T PF03224_consen 120 FIQLKAAFILTSLLSQGPKRSEKL---VKEALPKLLQWLSS----QLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNG 192 (312)
T ss_dssp HHHHHHHHHHHHHHTSTTT--HHH---HHHHHHHHHHHHH-----TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccch---HHHHHHHHHHHHHH----hhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCc
Confidence 334444556666655555554221 12333344444443 23334445668899999999999999999999999
Q ss_pred chhhhccCCC------c---ccccccceeeehhcchhhHHHHhhcCChhhH------------HHHHHHHHHHH----hc
Q 000177 616 MQKLLAVPRN------N---QTFFGLSSCLFTIGSLQGIMERVCALPTDVV------------HQLVELAIQLL----EC 670 (1922)
Q Consensus 616 lq~LL~vPR~------s---~a~tgvS~Clyylay~~~aMERvC~lp~~vl------------~~lV~yaLwLL----ec 670 (1922)
++.|..+-+. + +.-+-+-.|++-|+|++.+.|.+..-. ++ +.+|+.+|..| ++
T Consensus 193 v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 193 VSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY--LIPLLADILKDSIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS--HHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc--hHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 9999998831 1 344578899999999999999987655 33 44566666655 44
Q ss_pred CChHHhhhHhhHh
Q 000177 671 TQDQARKNAALFF 683 (1922)
Q Consensus 671 shds~r~~A~mFF 683 (1922)
+.++ +-..|-+
T Consensus 271 ~~~~--~~~~mv~ 281 (312)
T PF03224_consen 271 APKS--NIELMVL 281 (312)
T ss_dssp SSTT--HHHHHHH
T ss_pred cHHH--HHHHHHH
Confidence 4444 3444443
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=77.57 E-value=23 Score=46.47 Aligned_cols=141 Identities=14% Similarity=0.176 Sum_probs=79.5
Q ss_pred CEEEEEEcCCCCE-EEEEe--CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC----C-cEEEEecCCcEEEeccC
Q 000177 1511 LLTCITFLGDSSH-IAVGS--HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE----T-QLLLSSSSQDVHLWNAS 1582 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~l-LASGS--~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD----G-~lLaSSsDgtVkLWDl~ 1582 (1922)
+|..++|. ||+. ++|.- ..|.+++=|. +. -|.=.-|..+ +|.|- . .+|+.-....|.||.+.
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~v----iGqFEhV~Gl--sW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KV----IGQFEHVHGL--SWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCccccCCc---cE----eeccceeeee--eecCcccCCCCceEEEeccceEEEEEec
Confidence 47889997 5554 44432 3344433221 11 2223458888 56663 2 57777889999999986
Q ss_pred C---CCCCcceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEE
Q 000177 1583 S---IAGGPMHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1583 t---~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
. ...+.+.+-.. -..+.|||....++.- +.+..-.+++++......... .. ....+.+.
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VL---T~~dvSV~~sV~~d~srVkaD---i~---~~G~IhCA 161 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVL---TARDVSVLPSVHCDSSRVKAD---IK---TSGLIHCA 161 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEE---ecCceeEeeeeeeCCceEEEe---cc---CCceEEEE
Confidence 3 11222222111 1568899988877665 333444566666443322221 01 12334569
Q ss_pred EEcCCCCeEee--cc----EEEEcCC
Q 000177 1651 HFSPSDTMLLW--NG----ILWDRRN 1670 (1922)
Q Consensus 1651 aFSPdG~lLaS--gg----rLWDlrt 1670 (1922)
+|.+||+.|+. ++ ++||-..
T Consensus 162 CWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 162 CWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EecCcCCEEEEEeCCeEEEEEecCch
Confidence 99999987663 33 8999553
No 411
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=77.38 E-value=4.3 Score=53.95 Aligned_cols=102 Identities=16% Similarity=0.221 Sum_probs=73.5
Q ss_pred EEEEEEcCCCCEEEEEe----CCCcEEEEECCCCCceeeeccCCCC--eeEEEeeecCCCcEEEEec-CCcEEEeccCCC
Q 000177 1512 LTCITFLGDSSHIAVGS----HTKELKIFDSNSSSPLESCTSHQAP--VTLVQSHLSGETQLLLSSS-SQDVHLWNASSI 1584 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS----~DGtIkIWDl~tgk~l~tL~gHss~--VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~ 1584 (1922)
-+-..|+|...++++++ ..|+|.||- ++|++.+.. +.| ++++ +|+|..-+|+.+. -|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V---t~P~hatSL--CWHpe~~vLa~gwe~g~~~v~~~~~- 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV---TYPVHATSL--CWHPEEFVLAQGWEMGVSDVQKTNT- 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc---ccceehhhh--ccChHHHHHhhccccceeEEEecCC-
Confidence 34557888888888776 457888884 577755433 122 3457 7899887888886 78899999876
Q ss_pred CCCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1585 AGGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1585 ~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
+..++... +..+.|||+|..++++ ..-|.+.+|...
T Consensus 91 --~e~htv~~th~a~i~~l~wS~~G~~l~t~---d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 --TETHTVVETHPAPIQGLDWSHDGTVLMTL---DNPGSVHLWRYD 131 (1416)
T ss_pred --ceeeeeccCCCCCceeEEecCCCCeEEEc---CCCceeEEEEee
Confidence 22333322 3679999999999998 677899999765
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.29 E-value=1.3e+02 Score=37.21 Aligned_cols=108 Identities=8% Similarity=0.173 Sum_probs=74.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~g 1586 (1922)
..|.++.|+|+.+.|++-.....-.||=...|+.+.++ .+-. .--.| .|..+|+++++.. ++.+.++.+.. .
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-DpE~I--eyig~n~fvi~dER~~~l~~~~vd~--~ 160 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-DPETI--EYIGGNQFVIVDERDRALYLFTVDA--D 160 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-ChhHe--EEecCCEEEEEehhcceEEEEEEcC--C
Confidence 45999999999999998888888888877789998877 3322 22344 5566888888864 88888887765 2
Q ss_pred Ccc-------eEec-------cceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1587 GPM-------HSFE-------GCKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1587 k~l-------~tf~-------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
..+ .++. |...++|.|....|... -..+-+.||-+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a---KEr~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA---KERNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE---EccCCcEEEEEe
Confidence 111 1111 22568999988777776 445556666655
No 413
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.12 E-value=1.2e+02 Score=36.33 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=38.5
Q ss_pred eecCCCcEEEEe-cC---------CcEEEeccCCCCCCcceEecc--c-eeEEEcCCCCEEEEeecCCCCCeEEEEE--C
Q 000177 1560 HLSGETQLLLSS-SS---------QDVHLWNASSIAGGPMHSFEG--C-KAARFSNSGNLFAALPTETSDRGILLYD--I 1624 (1922)
Q Consensus 1560 afSpDG~lLaSS-sD---------gtVkLWDl~t~~gk~l~tf~g--h-~sVaFSPDG~~LaSgS~~S~DgtIrIWD--l 1624 (1922)
..+|+|++...- +| +.++.|-.. ++....+.. + +.++|+.+.+.|... ++.+-+|.-|| .
T Consensus 115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~---h~v~~i~~~v~IsNgl~Wd~d~K~fY~i--Dsln~~V~a~dyd~ 189 (310)
T KOG4499|consen 115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG---HQVELIWNCVGISNGLAWDSDAKKFYYI--DSLNYEVDAYDYDC 189 (310)
T ss_pred ccCCCCceeeeeeccccccccccccEEEEeccC---CCceeeehhccCCccccccccCcEEEEE--ccCceEEeeeecCC
Confidence 568999996652 12 234555443 222222222 1 778898888877775 57777887777 5
Q ss_pred CCCc
Q 000177 1625 QTYQ 1628 (1922)
Q Consensus 1625 rTgk 1628 (1922)
.+|.
T Consensus 190 ~tG~ 193 (310)
T KOG4499|consen 190 PTGD 193 (310)
T ss_pred Cccc
Confidence 5554
No 414
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=73.74 E-value=2.2e+02 Score=34.72 Aligned_cols=172 Identities=11% Similarity=0.116 Sum_probs=96.3
Q ss_pred eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEee-cc---EEEEcCCC
Q 000177 1596 KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLW-NG---ILWDRRNS 1671 (1922)
Q Consensus 1596 ~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaS-gg---rLWDlrtg 1671 (1922)
..+.|..+|.++-+++. -....|+.+|+.+++......-+ ..+-..-++...+.=+.+| -. .+||..+-
T Consensus 48 QGL~~~~~g~LyESTG~-yG~S~l~~~d~~tg~~~~~~~l~------~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGL-YGQSSLRKVDLETGKVLQSVPLP------PRYFGEGITILGDKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp EEEEEEETTEEEEEECS-TTEEEEEEEETTTSSEEEEEE-T------TT--EEEEEEETTEEEEEESSSSEEEEEETTTT
T ss_pred ccEEecCCCEEEEeCCC-CCcEEEEEEECCCCcEEEEEECC------ccccceeEEEECCEEEEEEecCCeEEEEccccc
Confidence 45778777877777633 23457999999999987665411 1122222444433323332 11 89999998
Q ss_pred cceeeeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEcCCCc-------eeEEEccCCCEEEEEEccCchh
Q 000177 1672 VPVHRFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSLDQ-------TTITFNARGDVIYAILRRNLED 1740 (1922)
Q Consensus 1672 k~I~kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH~~-------~sVaFSPdG~~LaSgs~~d~~d 1740 (1922)
+.+.+|.-....-.++ +-+...++|.+ .++|..+++.++++.-... +.+.|- +|.+.+-.|.
T Consensus 121 ~~~~~~~y~~EGWGLt-~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~----- 193 (264)
T PF05096_consen 121 KKIGTFPYPGEGWGLT-SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ----- 193 (264)
T ss_dssp EEEEEEE-SSS--EEE-ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT-----
T ss_pred eEEEEEecCCcceEEE-cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC-----
Confidence 8888886544333566 22334555544 3788888988887763322 556664 4544443432
Q ss_pred hhhhhcccccccCCcceEEEEecCCCceeeeecc----------------CCceEEEEEcCCCceEEEEec
Q 000177 1741 VMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV----------------DRCVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1741 v~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv----------------kr~I~dLa~SPdds~LAVVe~ 1795 (1922)
...+-.+|..+..-+..++. ..-.+.+|++|....+-|...
T Consensus 194 --------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 194 --------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp --------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred --------------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 23344555555555554432 123889999998887777653
No 415
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=73.26 E-value=25 Score=42.07 Aligned_cols=140 Identities=16% Similarity=0.261 Sum_probs=80.8
Q ss_pred EEEeccCCCCCCcceEeccc--eeEEEcCCCCEEEEeecCCCCCeEEEEECCC--CceeeeeccccccccCCCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFEGC--KAARFSNSGNLFAALPTETSDRGILLYDIQT--YQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh--~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT--gk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
-.+||+.+...+++...... .+-.|-+||+.+.+|+.......+++|+..+ +.+.. ...+.... .+.=.+.+.
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w-~e~~~~m~--~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDW-TESPNDMQ--SGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCc-eECccccc--CCCccccce
Confidence 45788887322333222222 3346788999999986554556788888654 11111 11000001 122223477
Q ss_pred EcCCCCeEeecc------EEEEcCCC--ccee-eecc-----CCCce--EEEEecCCCEEEEEe---EEEecCCCeEEEE
Q 000177 1652 FSPSDTMLLWNG------ILWDRRNS--VPVH-RFDQ-----FTDHG--GGGFHPAGNEVIINS---EVWDLRKFRLLRS 1712 (1922)
Q Consensus 1652 FSPdG~lLaSgg------rLWDlrtg--k~I~-kf~g-----h~~~V--sVaFSPdG~~LASGS---eIWDLrTgklL~t 1712 (1922)
.-|||+.|+.+| .+|.-+.. .... .|-. ..... .+...|+|+.++.+. .|||..+.+.++.
T Consensus 125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRT 204 (243)
T ss_pred ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEee
Confidence 789999999888 45554221 1111 1111 11111 678889999998888 4999999988888
Q ss_pred EcCCCc
Q 000177 1713 VPSLDQ 1718 (1922)
Q Consensus 1713 l~gH~~ 1718 (1922)
++....
T Consensus 205 lP~lPg 210 (243)
T PF07250_consen 205 LPDLPG 210 (243)
T ss_pred CCCCCC
Confidence 875443
No 416
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=73.19 E-value=10 Score=44.55 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCEEEEEeCCCcEEEEECCCC-CceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEeccceeE
Q 000177 1521 SSHIAVGSHTKELKIFDSNSS-SPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGCKAA 1598 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tg-k~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh~sV 1598 (1922)
+..|+.|+.+|.|.+|+.+-. .....+..-...|-++- .-..++.+..+ +.|+.|+.|++.. .+.+.....|+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I-p~~~~~~~~c~~~~dg~ir~~n~~p--~k~~g~~g~h~-- 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI-PNGRDSSLGCVGAQDGRIRACNIKP--NKVLGYVGQHN-- 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceecc-ccccccceeEEeccCCceeeecccc--Cceeeeecccc--
Confidence 457999999999999998622 11112222223343331 22223445555 5699999999976 44443333333
Q ss_pred EEcCCCCEEEEeecCCCCCeEEEEECCCCcee
Q 000177 1599 RFSNSGNLFAALPTETSDRGILLYDIQTYQLE 1630 (1922)
Q Consensus 1599 aFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i 1630 (1922)
|- ++..+++. +.|+.|.+|++.....+
T Consensus 145 -~~-~~e~~ivv---~sd~~i~~a~~S~d~~~ 171 (238)
T KOG2444|consen 145 -FE-SGEELIVV---GSDEFLKIADTSHDRVL 171 (238)
T ss_pred -CC-CcceeEEe---cCCceEEeeccccchhh
Confidence 22 23444444 55677777776654443
No 417
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=73.16 E-value=2.4e+02 Score=34.96 Aligned_cols=144 Identities=13% Similarity=0.183 Sum_probs=70.9
Q ss_pred ccCCCCeeEEEeeecCCCcEEEEecCCcE-EEeccCCCCCCcceE--eccceeEEEcCCCCEEEEeecCCCCCeEEEEEC
Q 000177 1548 TSHQAPVTLVQSHLSGETQLLLSSSSQDV-HLWNASSIAGGPMHS--FEGCKAARFSNSGNLFAALPTETSDRGILLYDI 1624 (1922)
Q Consensus 1548 ~gHss~VtsLq~afSpDG~lLaSSsDgtV-kLWDl~t~~gk~l~t--f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDl 1624 (1922)
..-.+.+..+ ..++||++++.+..|.+ .-||--.....+..+ ...+..+.|.|++...+.+ ..+.|++=+.
T Consensus 141 ~~~~gs~~~~--~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~----~Gg~~~~s~~ 214 (302)
T PF14870_consen 141 SETSGSINDI--TRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA----RGGQIQFSDD 214 (302)
T ss_dssp -S----EEEE--EE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE----TTTEEEEEE-
T ss_pred cCCcceeEeE--EECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe----CCcEEEEccC
Confidence 4445778888 78999999999987765 467754211111111 1225789999998877764 4577777661
Q ss_pred CCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc---EEEEcCCCcceeeecc---CCCce-EEEEecCCCEEEE
Q 000177 1625 QTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG---ILWDRRNSVPVHRFDQ---FTDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1625 rTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---rLWDlrtgk~I~kf~g---h~~~V-sVaFSPdG~~LAS 1697 (1922)
. ....++..+.......++....++|.+++...++++ .+.....|+.=.+-.. ....+ .+.|.++.+-++.
T Consensus 215 ~--~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 215 P--DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL 292 (302)
T ss_dssp T--TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred C--CCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence 1 112222211111112345556689999999888777 4444445554333322 12223 7777766666666
Q ss_pred Ee
Q 000177 1698 NS 1699 (1922)
Q Consensus 1698 GS 1699 (1922)
|.
T Consensus 293 G~ 294 (302)
T PF14870_consen 293 GQ 294 (302)
T ss_dssp -S
T ss_pred CC
Confidence 64
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.52 E-value=16 Score=50.75 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=86.2
Q ss_pred cCCCCCCEEEEEEcCCCCEEEE--EeCCCcEEEEECCCCCcee-----eec----cCCCCeeEEEeeecCC--CcEEEEe
Q 000177 1505 RDDAGALLTCITFLGDSSHIAV--GSHTKELKIFDSNSSSPLE-----SCT----SHQAPVTLVQSHLSGE--TQLLLSS 1571 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLAS--GS~DGtIkIWDl~tgk~l~-----tL~----gHss~VtsLq~afSpD--G~lLaSS 1571 (1922)
+-|.+-.|..+..++|+...++ .+.+-.|..||+.+..... -|. ....+|..++..|+|. -..+++.
T Consensus 96 ~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l 175 (1405)
T KOG3630|consen 96 KVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL 175 (1405)
T ss_pred eeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc
Confidence 3343344555556666664433 3344478889986532211 111 1223444333355654 3344456
Q ss_pred cCCcEEEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
.|+.|.+..+... ...+.++. ..++++|+|-|+.++.| -..|++.-|-.. .+....+..+... ..+.+.
T Consensus 176 ~dlsl~V~~~~~~-~~~v~s~p~t~~~Tav~WSprGKQl~iG---~nnGt~vQy~P~-leik~~ip~Pp~~---e~yrvl 247 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQL-AQNVTSFPVTNSQTAVLWSPRGKQLFIG---RNNGTEVQYEPS-LEIKSEIPEPPVE---ENYRVL 247 (1405)
T ss_pred cccchhhhhhhhh-hhhhcccCcccceeeEEeccccceeeEe---cCCCeEEEeecc-cceeecccCCCcC---CCccee
Confidence 7998888877641 12223332 24899999999999998 677888888654 3444444432222 246666
Q ss_pred EEEEcCCCCeEeecc
Q 000177 1649 QIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg 1663 (1922)
+++|-....+++.-+
T Consensus 248 ~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 248 SVTWLSTQEFLVVYG 262 (1405)
T ss_pred EEEEecceeEEEEec
Confidence 688888877777433
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=72.41 E-value=72 Score=40.06 Aligned_cols=103 Identities=15% Similarity=0.202 Sum_probs=52.7
Q ss_pred eeEEEeeecCCCcEEEEec------------CC-cEEEeccCCCCCCc--ceEec----cceeEEEcCCCCEEEEeecCC
Q 000177 1554 VTLVQSHLSGETQLLLSSS------------SQ-DVHLWNASSIAGGP--MHSFE----GCKAARFSNSGNLFAALPTET 1614 (1922)
Q Consensus 1554 VtsLq~afSpDG~lLaSSs------------Dg-tVkLWDl~t~~gk~--l~tf~----gh~sVaFSPDG~~LaSgS~~S 1614 (1922)
...| +|.++|+++++.. .+ .|.+++-....++. ...|. ..+.++|.++| .+++ .
T Consensus 16 P~~i--a~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~----~ 88 (367)
T TIGR02604 16 PIAV--CFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA----T 88 (367)
T ss_pred Ccee--eECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe----C
Confidence 3455 7788888887742 12 56666543322332 12332 23788999988 5555 3
Q ss_pred CCCeEEEEECCCC-----ceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1615 SDRGILLYDIQTY-----QLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1615 ~DgtIrIWDlrTg-----k~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
.....++.|.... +....+..-........|..+.+.|.|+|.+.++.+
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3333334455321 111111100000000134455699999999888655
No 420
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.65 E-value=16 Score=42.90 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=48.7
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceee-------ec-------cCCCCeeEEEeeecCCCcEEEEecCCcEEEeccC
Q 000177 1517 FLGDSSHIAVGSHTKELKIFDSNSSSPLES-------CT-------SHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNAS 1582 (1922)
Q Consensus 1517 FSPDG~lLASGS~DGtIkIWDl~tgk~l~t-------L~-------gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~ 1582 (1922)
+..++++|++-+.+|.+++||+.+++.+.. +. .....|..+ ..+.+|.-|++-++|....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~--~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSC--SLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEE--EEcCCCCEEEEEeCCCEEEeccc
Confidence 455788999999999999999998765432 12 345667777 67788888888667778888876
Q ss_pred C
Q 000177 1583 S 1583 (1922)
Q Consensus 1583 t 1583 (1922)
-
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 3
No 421
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=69.59 E-value=2.5 Score=54.43 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhh
Q 000177 756 ALRQYFRAHLLLLVD 770 (1922)
Q Consensus 756 aLR~Yf~aHL~~~v~ 770 (1922)
+|-+||-.-|...++
T Consensus 188 ~~M~~~~~em~~~~D 202 (1001)
T COG5406 188 VLMRYFVKEMEMLWD 202 (1001)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333455555555444
No 422
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=68.99 E-value=2.1e+02 Score=38.47 Aligned_cols=110 Identities=13% Similarity=0.145 Sum_probs=62.0
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEECCCCCcee--ee--ccCCCCeeEEEeeecCCCcEEEEe-cCC-----cEE
Q 000177 1514 CITFLGDSSHIAVGSHT------KELKIFDSNSSSPLE--SC--TSHQAPVTLVQSHLSGETQLLLSS-SSQ-----DVH 1577 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~D------GtIkIWDl~tgk~l~--tL--~gHss~VtsLq~afSpDG~lLaSS-sDg-----tVk 1577 (1922)
++++. +|.+.++|+.| .++..||..+++... .+ ..+...|..+ +|.+.+.| .|| +|-
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE 399 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVE 399 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE------CCEEEEEeccccccccccEE
Confidence 44444 45788899998 356778887766433 12 1223334444 67776664 465 477
Q ss_pred EeccCCCCCCcceEeccc--eeEEEcCCCCEEEEeecCCCC---CeEEEEECCCCcee
Q 000177 1578 LWNASSIAGGPMHSFEGC--KAARFSNSGNLFAALPTETSD---RGILLYDIQTYQLE 1630 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh--~sVaFSPDG~~LaSgS~~S~D---gtIrIWDlrTgk~i 1630 (1922)
.||..+.....+...... ....-.-+|+..+.|+.++.. .++..||..+.+..
T Consensus 400 ~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 400 CYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred EecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 788876333322222111 111122257777777544444 67889999886643
No 423
>PRK13616 lipoprotein LpqB; Provisional
Probab=68.37 E-value=79 Score=42.51 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=33.9
Q ss_pred CCeeEEEeeecCCCcEEEEec-------CCcEEEeccCCCCCCcceEecc--ceeEEEcCCCCEEEEe
Q 000177 1552 APVTLVQSHLSGETQLLLSSS-------SQDVHLWNASSIAGGPMHSFEG--CKAARFSNSGNLFAAL 1610 (1922)
Q Consensus 1552 s~VtsLq~afSpDG~lLaSSs-------DgtVkLWDl~t~~gk~l~tf~g--h~sVaFSPDG~~LaSg 1610 (1922)
..+.+. ..+|+|+.++.-. |..-.||=.... +.......+ ...-.|+|+|+.+++.
T Consensus 350 ~~vssp--aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~~~t~PsWspDG~~lw~v 414 (591)
T PRK13616 350 GNITSA--ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGHSLTRPSWSLDADAVWVV 414 (591)
T ss_pred cCcccc--eECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCCCCCCceECCCCCceEEE
Confidence 456666 7899999887632 444444433221 222222222 4778999999988876
No 424
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=68.02 E-value=74 Score=38.19 Aligned_cols=144 Identities=12% Similarity=0.185 Sum_probs=79.2
Q ss_pred EEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec--C--CcEEEeccCCCCCCcce-E----ecc---ceeEEEc
Q 000177 1534 KIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS--S--QDVHLWNASSIAGGPMH-S----FEG---CKAARFS 1601 (1922)
Q Consensus 1534 kIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs--D--gtVkLWDl~t~~gk~l~-t----f~g---h~sVaFS 1601 (1922)
.+||+.+++... +.- ...++|-.-.+-+||++|.+|. + ..+++++.......+.. . +.. .-++.--
T Consensus 49 ~~yD~~tn~~rp-l~v-~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 49 VEYDPNTNTFRP-LTV-QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEecCCCcEEe-ccC-CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 578887765432 211 1223333336788999999964 3 35888876431112211 1 111 1345667
Q ss_pred CCCCEEEEeecCCCCCeEEEEECCCC-ceeeeec-cccccccCCCCcceEEEEcCCCCeEeecc---EEEEcCCCcceee
Q 000177 1602 NSGNLFAALPTETSDRGILLYDIQTY-QLEAKLS-DTSVNLTGRGHAYSQIHFSPSDTMLLWNG---ILWDRRNSVPVHR 1676 (1922)
Q Consensus 1602 PDG~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~-d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---rLWDlrtgk~I~k 1676 (1922)
|||+.|+.|+ ....+.-+|.-... .....+. -.........+-.+.+...|+|++++.+. .|||..+.+.++.
T Consensus 127 ~DG~vlIvGG--~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGG--SNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeC--cCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEee
Confidence 7999999983 22344555654321 1111111 00000011223344588899999999776 9999999888777
Q ss_pred eccCC
Q 000177 1677 FDQFT 1681 (1922)
Q Consensus 1677 f~gh~ 1681 (1922)
|....
T Consensus 205 lP~lP 209 (243)
T PF07250_consen 205 LPDLP 209 (243)
T ss_pred CCCCC
Confidence 76543
No 425
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=67.44 E-value=92 Score=38.08 Aligned_cols=96 Identities=15% Similarity=0.228 Sum_probs=57.1
Q ss_pred CCEEEEEeC----------CCcEEEEECCCC----Cceeee--ccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCC
Q 000177 1521 SSHIAVGSH----------TKELKIFDSNSS----SPLESC--TSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSI 1584 (1922)
Q Consensus 1521 G~lLASGS~----------DGtIkIWDl~tg----k~l~tL--~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~ 1584 (1922)
-.+|+.|+. .|.|.++++... ..+..+ ....++|++|+ .| +++ |+.+..+.|.+|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~-~~--~~~-lv~~~g~~l~v~~l~~- 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAIC-SF--NGR-LVVAVGNKLYVYDLDN- 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEE-EE--TTE-EEEEETTEEEEEEEET-
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhh-hh--CCE-EEEeecCEEEEEEccC-
Confidence 468888874 288999999874 222222 34578999995 34 444 7777779999999987
Q ss_pred CCC-cc--eEecc-ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1585 AGG-PM--HSFEG-CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1585 ~gk-~l--~tf~g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
.+ .. ..+.. ...+.....+++|+.| ...+.+.++..+
T Consensus 117 -~~~l~~~~~~~~~~~i~sl~~~~~~I~vg---D~~~sv~~~~~~ 157 (321)
T PF03178_consen 117 -SKTLLKKAFYDSPFYITSLSVFKNYILVG---DAMKSVSLLRYD 157 (321)
T ss_dssp -TSSEEEEEEE-BSSSEEEEEEETTEEEEE---ESSSSEEEEEEE
T ss_pred -cccchhhheecceEEEEEEeccccEEEEE---EcccCEEEEEEE
Confidence 33 21 11211 1223333336688887 445557766443
No 426
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=65.42 E-value=82 Score=41.20 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=27.0
Q ss_pred eecCCCcEEEEecCCcEEEeccCCCCCCcceE--ecc-----ceeEEEcCCCCEEEEee
Q 000177 1560 HLSGETQLLLSSSSQDVHLWNASSIAGGPMHS--FEG-----CKAARFSNSGNLFAALP 1611 (1922)
Q Consensus 1560 afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~t--f~g-----h~sVaFSPDG~~LaSgS 1611 (1922)
.+.++|.+++.+. ..+..+|+. |+.+.. +.+ |+.+.+-|+|++|+.+.
T Consensus 154 ~~l~nG~ll~~~~-~~~~e~D~~---G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 154 KQLPNGNLLIGSG-NRLYEIDLL---GKVIWEYDLPGGYYDFHHDIDELPNGNLLILAS 208 (477)
T ss_dssp EE-TTS-EEEEEB-TEEEEE-TT-----EEEEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred eEcCCCCEEEecC-CceEEEcCC---CCEEEeeecCCcccccccccEECCCCCEEEEEe
Confidence 4568888887755 777778875 554433 333 78899999999988873
No 427
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.89 E-value=1.3e+02 Score=41.00 Aligned_cols=190 Identities=17% Similarity=0.215 Sum_probs=97.2
Q ss_pred eCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEe--------ccceeEE
Q 000177 1528 SHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSF--------EGCKAAR 1599 (1922)
Q Consensus 1528 S~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf--------~gh~sVa 1599 (1922)
+.--.|+||+. +|..+.++.-....+-.+ .|+.+..+|+...+|++.+|++.. ..+..+ ..+..+.
T Consensus 61 ~a~~~I~If~~-sG~lL~~~~w~~~~lI~m--gWs~~eeLI~v~k~g~v~Vy~~~g---e~ie~~svg~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 61 SARPYIRIFNI-SGQLLGRILWKHGELIGM--GWSDDEELICVQKDGTVHVYGLLG---EFIESNSVGFESQMSDIVECR 134 (829)
T ss_pred ccceeEEEEec-cccchHHHHhcCCCeeee--cccCCceEEEEeccceEEEeecch---hhhcccccccccccCceeEEE
Confidence 34456888887 677776664334467777 889999999999999999999963 323221 1123334
Q ss_pred EcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE-EEEcCCC--CeEe----ecc-EEEEcCCC
Q 000177 1600 FSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ-IHFSPSD--TMLL----WNG-ILWDRRNS 1671 (1922)
Q Consensus 1600 FSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v-VaFSPdG--~lLa----Sgg-rLWDlrtg 1671 (1922)
|..+|=.+.+. .+..+.+.+... -...++++...+. -...+ -.+.|.. ..++ +.+ .++-+.++
T Consensus 135 ~f~~GVavlt~----~g~v~~i~~~~~-~~~~~~~diP~~~----~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~ 205 (829)
T KOG2280|consen 135 FFHNGVAVLTV----SGQVILINGVEE-PKLRKMPDIPYNE----LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES 205 (829)
T ss_pred EecCceEEEec----CCcEEEEcCCCc-chhhhCCCCCCcc----CCCcceeEecCCCcceeEEeechhhhhcccceecc
Confidence 44466555553 223333333332 2223333211110 11112 2222221 1222 111 33333333
Q ss_pred c-ceeeeccC-CCceEEEEecCCCEEEEEe---EEEecC--CCeEEEEEc--CCCc-eeEEEccCCCEEEE
Q 000177 1672 V-PVHRFDQF-TDHGGGGFHPAGNEVIINS---EVWDLR--KFRLLRSVP--SLDQ-TTITFNARGDVIYA 1732 (1922)
Q Consensus 1672 k-~I~kf~gh-~~~VsVaFSPdG~~LASGS---eIWDLr--TgklL~tl~--gH~~-~sVaFSPdG~~LaS 1732 (1922)
. ..+.|... ...+.+..||+..+|+--. +||-+. ..+.+-.+. .|.. ..++|..+..++++
T Consensus 206 ~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~ 276 (829)
T KOG2280|consen 206 RVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLS 276 (829)
T ss_pred cccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEE
Confidence 2 23444444 3344899999999998766 466432 223333333 2222 47788777644444
No 428
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=64.40 E-value=3.1e+02 Score=32.82 Aligned_cols=149 Identities=14% Similarity=0.138 Sum_probs=82.3
Q ss_pred CEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEEec-CCcEEEec-cCCCCC
Q 000177 1511 LLTCITFLGDSSHIAVGS-HTKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWN-ASSIAG 1586 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS-~DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWD-l~t~~g 1586 (1922)
.+...++++||+.++.-. .++.-.+|-...+.....+ .+. .+..- +|++++.+.+... +....++. ......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~P--S~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRP--SWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccc--cccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999999776555 2333334433334333332 332 44555 7888988777743 55555553 222111
Q ss_pred Ccce----Eec-cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce--eeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1587 GPMH----SFE-GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL--EAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1587 k~l~----tf~-gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~--i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
..+. .+. .+..+.++|||.+++.......++.|.+--+..... -..+..+.............+.|.+++.++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 1111 112 358899999999988875445567777776542111 111211111111112333449999999988
Q ss_pred eecc
Q 000177 1660 LWNG 1663 (1922)
Q Consensus 1660 aSgg 1663 (1922)
+...
T Consensus 181 V~~~ 184 (253)
T PF10647_consen 181 VLGR 184 (253)
T ss_pred EEeC
Confidence 8554
No 429
>PRK13684 Ycf48-like protein; Provisional
Probab=63.47 E-value=2.1e+02 Score=35.61 Aligned_cols=139 Identities=9% Similarity=0.091 Sum_probs=73.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEE-EECCCCCceeee-ccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKI-FDSNSSSPLESC-TSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkI-WDl~tgk~l~tL-~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk 1587 (1922)
+.+.++.+.+++.++++|.. |.+.. ++ ..++.-..+ ..-...++++ .+.+++++++.+..|.+.+=.... +.
T Consensus 173 g~~~~i~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~~~~~~~~l~~i--~~~~~g~~~~vg~~G~~~~~s~d~--G~ 246 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPHQRNSSRRLQSM--GFQPDGNLWMLARGGQIRFNDPDD--LE 246 (334)
T ss_pred ceEEEEEECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEeeCCCcccceee--eEcCCCCEEEEecCCEEEEccCCC--CC
Confidence 67899999999877766554 54432 22 122212222 2334677888 788999988888878765322222 21
Q ss_pred cce--------EeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1588 PMH--------SFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1588 ~l~--------tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
.-. .......+.|.|++..++++ .+|.+. +-...|+....+..+. ........+.|..+++.+
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G----~~G~v~-~S~d~G~tW~~~~~~~----~~~~~~~~~~~~~~~~~~ 317 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGG----GNGTLL-VSKDGGKTWEKDPVGE----EVPSNFYKIVFLDPEKGF 317 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEc----CCCeEE-EeCCCCCCCeECCcCC----CCCcceEEEEEeCCCceE
Confidence 111 11124678899988877764 445443 3444444433332000 001122235555566666
Q ss_pred eecc
Q 000177 1660 LWNG 1663 (1922)
Q Consensus 1660 aSgg 1663 (1922)
+.+.
T Consensus 318 ~~G~ 321 (334)
T PRK13684 318 VLGQ 321 (334)
T ss_pred EECC
Confidence 6554
No 430
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=63.00 E-value=3.5e+02 Score=35.51 Aligned_cols=53 Identities=6% Similarity=-0.006 Sum_probs=36.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc--eeee----c-cCCCCeeEEEeeecCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP--LESC----T-SHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~--l~tL----~-gHss~VtsLq~afSpD 1564 (1922)
..-+.++|.|||++|++--..|.|++++..++.. +..+ . .-......| +++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlgl--al~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGL--ALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeE--EECCC
Confidence 4568999999998877766679999998655432 1111 1 125667888 77766
No 431
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=62.98 E-value=1.8e+02 Score=36.04 Aligned_cols=117 Identities=13% Similarity=0.100 Sum_probs=63.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCC---C
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIA---G 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~---g 1586 (1922)
+.++.+..++||+++++++.-....-||--...-...-..-...|..+ .|+|++.+.+....+.|+.=+..... .
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~--gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSM--GFSPDGNLWMLARGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEE--EE-TTS-EEEEETTTEEEEEE-TTEEEEE-
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhc--eecCCCCEEEEeCCcEEEEccCCCCccccc
Confidence 778999999999999998776666788853222222233346789999 88999998777777777665511100 0
Q ss_pred C---cc-eEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1587 G---PM-HSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1587 k---~l-~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
+ ++ ..--++..++|.+++...++| + .+ ..+.....|+..+..
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~g---g-~G-~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVG---G-SG-TLLVSTDGGKTWQKD 268 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEE---S-TT--EEEESSTTSS-EE-
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEe---C-Cc-cEEEeCCCCccceEC
Confidence 0 11 111124778999998888887 2 23 244555566655444
No 432
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=62.94 E-value=6.1 Score=50.37 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=8.0
Q ss_pred cccChHHHHHHHHHHHHh
Q 000177 1164 ISYHSRELLLLIHEHLQA 1181 (1922)
Q Consensus 1164 I~y~e~ELL~LI~~HL~~ 1181 (1922)
|+|=..+++++||.-|.+
T Consensus 204 i~~Vk~qvv~~VydLL~a 221 (821)
T COG5593 204 IQYVKKQVVRLVYDLLEA 221 (821)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 444444444444444433
No 433
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.71 E-value=1.1e+02 Score=36.16 Aligned_cols=101 Identities=12% Similarity=0.098 Sum_probs=58.0
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCCceeeeccC-----CCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEe
Q 000177 1520 DSSHIAVGSHT--KELKIFDSNSSSPLESCTSH-----QAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSF 1592 (1922)
Q Consensus 1520 DG~lLASGS~D--GtIkIWDl~tgk~l~tL~gH-----ss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf 1592 (1922)
+|.++.+.+.- ..|++||+.+|+.+.+-+-. ...|+.+ .|.-+.+|=.++.-..+|..+ -+++..|
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t--~~~lg~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADT--LEELGRF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHH--hhhhccc
Confidence 45566665544 36999999999877654221 2233333 344455666788888999887 5555443
Q ss_pred --ccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1593 --EGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1593 --~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
+|. +.++ .|++.++.+ ....++..-|..+.....+
T Consensus 128 ~y~GeGWgLt--~d~~~Lims---dGsatL~frdP~tfa~~~~ 165 (262)
T COG3823 128 SYEGEGWGLT--SDDKNLIMS---DGSATLQFRDPKTFAELDT 165 (262)
T ss_pred ccCCcceeee--cCCcceEee---CCceEEEecCHHHhhhcce
Confidence 332 4443 345556665 3334566666665444333
No 434
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=60.87 E-value=4.2e+02 Score=33.15 Aligned_cols=209 Identities=11% Similarity=0.122 Sum_probs=111.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECC------CC-Cceeeecc-----CCCCeeEEEeeecCC-------------Cc
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSN------SS-SPLESCTS-----HQAPVTLVQSHLSGE-------------TQ 1566 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~------tg-k~l~tL~g-----Hss~VtsLq~afSpD-------------G~ 1566 (1922)
-|.|+|+|.+.+-++....+...+||.. .. ..+.++.. -....+.+ .|+.. ..
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGi--VfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQ--VFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEE--EEeCCCceEEcCCCccccee
Confidence 4889999999998999999999999986 12 22334431 12345666 44432 23
Q ss_pred EEEEecCCcEEEeccCCCCC---CcceEec----c--ceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCcee--eee
Q 000177 1567 LLLSSSSQDVHLWNASSIAG---GPMHSFE----G--CKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLE--AKL 1633 (1922)
Q Consensus 1567 lLaSSsDgtVkLWDl~t~~g---k~l~tf~----g--h~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i--~tL 1633 (1922)
+|.++.||+|.-|.-..... .....+. + .+.+++... +.+|+.+ +-..++|.+||-.-.+.. ..|
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaa--dF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAA--NFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEe--ccCCCceEEecCccccccCCCCc
Confidence 56667899999998643111 0111221 1 144565543 5677776 346789999986533221 123
Q ss_pred ccccccccCCCCcce-E-----EEEc---CCCCeEeec-c----EEEEcCCCcceeeeccC---CCceEEEEec------
Q 000177 1634 SDTSVNLTGRGHAYS-Q-----IHFS---PSDTMLLWN-G----ILWDRRNSVPVHRFDQF---TDHGGGGFHP------ 1690 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~-v-----VaFS---PdG~lLaSg-g----rLWDlrtgk~I~kf~gh---~~~VsVaFSP------ 1690 (1922)
.++.+........+. + ++|- ++.+.=+.+ + -+||. .|+.+++|... +.+-.++..|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 333222100000000 0 2222 111111111 1 56774 37777777422 1111444433
Q ss_pred CCCEEEEEe-----EEEecCCCeEEEEEcCCCc--------eeEEEcc
Q 000177 1691 AGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--------TTITFNA 1725 (1922)
Q Consensus 1691 dG~~LASGS-----eIWDLrTgklL~tl~gH~~--------~sVaFSP 1725 (1922)
.|..|+-+- ..+|..+++.+..+..... |.++|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 344444332 4899988988877764332 7788765
No 435
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=60.77 E-value=19 Score=32.05 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=26.4
Q ss_pred CCEEEEEEcCC-C--CEEEEEeCCCcEEEEECCC
Q 000177 1510 ALLTCITFLGD-S--SHIAVGSHTKELKIFDSNS 1540 (1922)
Q Consensus 1510 ~~Vt~LaFSPD-G--~lLASGS~DGtIkIWDl~t 1540 (1922)
+.|.+|+|||. + .+|+..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5899999999999999974
No 436
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.13 E-value=4.2e+02 Score=32.93 Aligned_cols=109 Identities=12% Similarity=0.216 Sum_probs=67.5
Q ss_pred ccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEec--c---ceeEEEcCCCCEEEEeecCCCCCeEEE
Q 000177 1548 TSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFE--G---CKAARFSNSGNLFAALPTETSDRGILL 1621 (1922)
Q Consensus 1548 ~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~--g---h~sVaFSPDG~~LaSgS~~S~DgtIrI 1621 (1922)
.|-+..|.++ .|+|+.+.|.+-. ...-.||=... |+.++++. + -..++|..+|++.++- -.++.+.+
T Consensus 82 ~g~~~nvS~L--Tynp~~rtLFav~n~p~~iVElt~~--GdlirtiPL~g~~DpE~Ieyig~n~fvi~d---ER~~~l~~ 154 (316)
T COG3204 82 LGETANVSSL--TYNPDTRTLFAVTNKPAAIVELTKE--GDLIRTIPLTGFSDPETIEYIGGNQFVIVD---ERDRALYL 154 (316)
T ss_pred ccccccccce--eeCCCcceEEEecCCCceEEEEecC--CceEEEecccccCChhHeEEecCCEEEEEe---hhcceEEE
Confidence 4445669999 8999999888854 33334443333 77777654 2 2668888888887775 78888988
Q ss_pred EECCCCceeeeeccccccccCCCC---cceEEEEcCCCCeEeecc
Q 000177 1622 YDIQTYQLEAKLSDTSVNLTGRGH---AYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1622 WDlrTgk~i~tL~d~s~~~~~~gh---~~~vVaFSPdG~lLaSgg 1663 (1922)
+-+.....+..+...........+ .-.-++|+|.++.+...-
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK 199 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK 199 (316)
T ss_pred EEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE
Confidence 887766444433321111111111 112299999988776554
No 437
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=59.94 E-value=1.1e+02 Score=32.72 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=41.7
Q ss_pred eeEEEe-eecCC--CcEEEEecCCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1554 VTLVQS-HLSGE--TQLLLSSSSQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1554 VtsLq~-afSpD--G~lLaSSsDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
|++++. .|..| ..+|+.|.|..|++|+-.. .+..+.. +.++.-... .+|+.+ ...|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~e~~~v~~L~~~~~-~~F~Y~---l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEITETDKVTSLCSLGG-GRFAYA---LANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEEecccceEEEEEcCC-CEEEEE---ecCCEEEEEeCc
Confidence 455533 45555 4577778899999998754 5666654 344444444 557777 778889888753
No 438
>PHA02790 Kelch-like protein; Provisional
Probab=59.12 E-value=1.5e+02 Score=38.76 Aligned_cols=141 Identities=11% Similarity=0.013 Sum_probs=67.4
Q ss_pred CCEEEEEeCCC-----cEEEEECCCCCcee--eeccCCCCeeEEEeeecCCCcEEEEec-C--CcEEEeccCCCCCCcce
Q 000177 1521 SSHIAVGSHTK-----ELKIFDSNSSSPLE--SCTSHQAPVTLVQSHLSGETQLLLSSS-S--QDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1521 G~lLASGS~DG-----tIkIWDl~tgk~l~--tL~gHss~VtsLq~afSpDG~lLaSSs-D--gtVkLWDl~t~~gk~l~ 1590 (1922)
+.++++|+.++ ++..||..+++... .+.........+ .-++++.+.|. + .++..||..+.....+.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v----~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV----PANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE----EECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 45556676543 46677876654322 111111111112 12667666653 2 45777887541111111
Q ss_pred Eeccc--eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--EEE
Q 000177 1591 SFEGC--KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--ILW 1666 (1922)
Q Consensus 1591 tf~gh--~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--rLW 1666 (1922)
.+... ......-+|+..+.|+..+....+..||.++.+-.. .. .+.....+| ....-+|++.+.|| ..|
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~-~~--~m~~~r~~~----~~~~~~~~IYv~GG~~e~y 420 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF-GP--STYYPHYKS----CALVFGRRLFLVGRNAEFY 420 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe-CC--CCCCccccc----eEEEECCEEEEECCceEEe
Confidence 11111 111122357777777443334567889988754322 21 111100111 22234677777777 678
Q ss_pred EcCCCc
Q 000177 1667 DRRNSV 1672 (1922)
Q Consensus 1667 Dlrtgk 1672 (1922)
|..+.+
T Consensus 421 dp~~~~ 426 (480)
T PHA02790 421 CESSNT 426 (480)
T ss_pred cCCCCc
Confidence 887653
No 439
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=58.69 E-value=4e+02 Score=32.19 Aligned_cols=206 Identities=11% Similarity=0.129 Sum_probs=98.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCCcee-eeccCCCCeeEEEeeecCCC-cEEEE-ecCCcEEEeccCCCCCCcceEecc---
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLE-SCTSHQAPVTLVQSHLSGET-QLLLS-SSSQDVHLWNASSIAGGPMHSFEG--- 1594 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~-tL~gHss~VtsLq~afSpDG-~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g--- 1594 (1922)
+.++.+--..|.|.-||....+..+ ++.+.. +.++.+-....- .+.+. |+.-.|--||.........+++-.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 5566776677888889987765443 333322 222211111111 23333 334445668854321333333221
Q ss_pred ------ceeEEEcCCCCEEEEeecCCC------CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-e
Q 000177 1595 ------CKAARFSNSGNLFAALPTETS------DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-W 1661 (1922)
Q Consensus 1595 ------h~sVaFSPDG~~LaSgS~~S~------DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-S 1661 (1922)
.+.-..+|+|++++....+.. .+.++.|-.. ++....+. .-.-.+-++|+.+.+.+. .
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~--------~v~IsNgl~Wd~d~K~fY~i 175 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWN--------CVGISNGLAWDSDAKKFYYI 175 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeeh--------hccCCccccccccCcEEEEE
Confidence 155678899999665422211 1233333221 11111111 000112278887766544 3
Q ss_pred cc---EE--EE--cCCCc-----ceeeecc---CCCce--EEEEecCCCEEEEEe---E--EEecCCCeEEEEEcCCCc-
Q 000177 1662 NG---IL--WD--RRNSV-----PVHRFDQ---FTDHG--GGGFHPAGNEVIINS---E--VWDLRKFRLLRSVPSLDQ- 1718 (1922)
Q Consensus 1662 gg---rL--WD--lrtgk-----~I~kf~g---h~~~V--sVaFSPdG~~LASGS---e--IWDLrTgklL~tl~gH~~- 1718 (1922)
.+ .+ || ..+|. .+..+.. ..... .++..-.|+..++.- + ..|..||+.+.+++-...
T Consensus 176 Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 176 DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc
Confidence 44 33 66 44543 2333322 11112 444455666544332 3 568889999998874333
Q ss_pred -eeEEEcc-CCCEEEEEEccC
Q 000177 1719 -TTITFNA-RGDVIYAILRRN 1737 (1922)
Q Consensus 1719 -~sVaFSP-dG~~LaSgs~~d 1737 (1922)
++++|-. +-..+++....+
T Consensus 256 itsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 256 ITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred eEEEEecCCCccEEEEEehhc
Confidence 7888864 445666654333
No 440
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=58.19 E-value=1.3e+02 Score=40.02 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.5
Q ss_pred CCCC---EEEEEeCCCcEEEEECCCCCce
Q 000177 1519 GDSS---HIAVGSHTKELKIFDSNSSSPL 1544 (1922)
Q Consensus 1519 PDG~---lLASGS~DGtIkIWDl~tgk~l 1544 (1922)
.+|+ .|+.++++|.+.+.|-.+|+.+
T Consensus 310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 4666 7889999999999999999875
No 441
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=57.58 E-value=6e+02 Score=35.53 Aligned_cols=151 Identities=14% Similarity=0.187 Sum_probs=80.3
Q ss_pred cCCCCeeEEEee---e--cCCCcEEEEecCCcEEEecc------CC-------CCCCcceEec-------cceeEEEcC-
Q 000177 1549 SHQAPVTLVQSH---L--SGETQLLLSSSSQDVHLWNA------SS-------IAGGPMHSFE-------GCKAARFSN- 1602 (1922)
Q Consensus 1549 gHss~VtsLq~a---f--SpDG~lLaSSsDgtVkLWDl------~t-------~~gk~l~tf~-------gh~sVaFSP- 1602 (1922)
.-..+|..|+++ . .+...+|+.=....+.|+.. .. ....++..+. .|..++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788888543 1 12335777766666666661 11 0012333333 157799999
Q ss_pred CCCEEEEeecCCCCCeEEEEECCCCce----eeeecccccc---ccCCCCcce-EEEEcCCCCeEeecc----EEEEcCC
Q 000177 1603 SGNLFAALPTETSDRGILLYDIQTYQL----EAKLSDTSVN---LTGRGHAYS-QIHFSPSDTMLLWNG----ILWDRRN 1670 (1922)
Q Consensus 1603 DG~~LaSgS~~S~DgtIrIWDlrTgk~----i~tL~d~s~~---~~~~gh~~~-vVaFSPdG~lLaSgg----rLWDlrt 1670 (1922)
+.+.|+.. ...|...|||+..... ...+...... .....+..+ .+.|.++-+.|+.+. .++|+.+
T Consensus 157 ~~~q~AiV---D~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~ 233 (765)
T PF10214_consen 157 DQRQFAIV---DEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFES 233 (765)
T ss_pred ccceEEEE---eccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCC
Confidence 45678887 6779999999921111 1111100000 011122233 288988876666555 7889887
Q ss_pred Ccceeee--ccCCCce-EEEEecC--C-CEEEEEeE-EE
Q 000177 1671 SVPVHRF--DQFTDHG-GGGFHPA--G-NEVIINSE-VW 1702 (1922)
Q Consensus 1671 gk~I~kf--~gh~~~V-sVaFSPd--G-~~LASGSe-IW 1702 (1922)
......+ .....+| .+.-+|. + -+|+|..+ ||
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw 272 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIW 272 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEecCeEEE
Confidence 6543212 1222344 6776766 3 34444444 45
No 442
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=56.47 E-value=8e+02 Score=34.99 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=88.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECC--CCCceeee--ccCCCCeeEEEeeec-CCCcEEEEecCCcEEEeccCCCCC
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSN--SSSPLESC--TSHQAPVTLVQSHLS-GETQLLLSSSSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~--tgk~l~tL--~gHss~VtsLq~afS-pDG~lLaSSsDgtVkLWDl~t~~g 1586 (1922)
|--..|-.|..+|.++..||.+.-|.++ +|+.-..- .--+.|+.-- .|+ ..++.+.+++|+-..+|.-+.
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr--~f~sk~~t~vfa~sdrP~viY~~n~--- 660 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLR--TFSSKSRTAVFALSDRPTVIYSSNG--- 660 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEE--EEeeCCceEEEEeCCCCEEEEecCC---
Confidence 4555666678899999999999877654 33321111 1113344333 343 345567777777766676552
Q ss_pred CcceEe---ccc-eeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCce--eeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1587 GPMHSF---EGC-KAARFSNS--GNLFAALPTETSDRGILLYDIQTYQL--EAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1587 k~l~tf---~gh-~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~--i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
+.+.+- +.. +-+.|+.+ ...++.+ ..+.+++.-+..-+. +.+++ .+.....+++.+...+
T Consensus 661 kLv~spls~kev~~~c~f~s~a~~d~l~~~----~~~~l~i~tid~iqkl~irtvp--------l~~~prrI~~q~~sl~ 728 (1096)
T KOG1897|consen 661 KLVYSPLSLKEVNHMCPFNSDAYPDSLASA----NGGALTIGTIDEIQKLHIRTVP--------LGESPRRICYQESSLT 728 (1096)
T ss_pred cEEEeccchHHhhhhcccccccCCceEEEe----cCCceEEEEecchhhcceeeec--------CCCChhheEecccceE
Confidence 332221 111 23445443 3456654 235577766553222 12222 1222222555553333
Q ss_pred Eeecc-------------------EEEEcCCCcceeee--ccCCCce---EEEEecC-CCEEEEEe
Q 000177 1659 LLWNG-------------------ILWDRRNSVPVHRF--DQFTDHG---GGGFHPA-GNEVIINS 1699 (1922)
Q Consensus 1659 LaSgg-------------------rLWDlrtgk~I~kf--~gh~~~V---sVaFSPd-G~~LASGS 1699 (1922)
+...+ +++|-.+-+.++.. ....... ++.|+.| +.+++.|+
T Consensus 729 ~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT 794 (1096)
T KOG1897|consen 729 FGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGT 794 (1096)
T ss_pred EEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEE
Confidence 33221 67777766654433 2222222 5668888 77888887
No 443
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=55.98 E-value=19 Score=32.48 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=27.5
Q ss_pred ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee
Q 000177 1595 CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE 1630 (1922)
Q Consensus 1595 h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i 1630 (1922)
+.++.|+|..+.|+.+ +.+|.|.+|.+ +++.+
T Consensus 14 v~~~~w~P~mdLiA~~---t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALG---TEDGEVLVYRL-NWQRI 45 (47)
T ss_pred EEEEEECCCCCEEEEE---ECCCeEEEEEC-CCcCc
Confidence 4789999999999999 88999999999 55543
No 444
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=55.89 E-value=20 Score=36.07 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=55.5
Q ss_pred HHHHHHHhhhchhH-HHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhh-HHHHhccccchh
Q 000177 541 EKYCIQCLETLGEY-VEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKF-AALFVDRGGMQK 618 (1922)
Q Consensus 541 q~~~l~~L~~lGEY-qE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKf-A~eFV~~gGlq~ 618 (1922)
....+.+|.-+..+ .+....++..+++..++.+|.. ++.++...+++.|+.|..+.+- ...+++.|.+..
T Consensus 24 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~ 95 (120)
T cd00020 24 QREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--------EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPK 95 (120)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--------CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHH
Confidence 35677888888877 4555566677999998988863 3457788999999999988854 455677788877
Q ss_pred hhcc
Q 000177 619 LLAV 622 (1922)
Q Consensus 619 LL~v 622 (1922)
|+++
T Consensus 96 l~~~ 99 (120)
T cd00020 96 LVNL 99 (120)
T ss_pred HHHH
Confidence 7775
No 445
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=55.24 E-value=8.5 Score=49.44 Aligned_cols=13 Identities=8% Similarity=0.347 Sum_probs=7.3
Q ss_pred CcceEEEEcCCCC
Q 000177 1645 HAYSQIHFSPSDT 1657 (1922)
Q Consensus 1645 h~~~vVaFSPdG~ 1657 (1922)
++.-++.|.+|..
T Consensus 272 Y~~LV~qF~kDee 284 (615)
T KOG0526|consen 272 YPFLVLQFGKDEE 284 (615)
T ss_pred cceEEEEeccccc
Confidence 4444566766653
No 446
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=55.11 E-value=65 Score=41.48 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=55.8
Q ss_pred CCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEecccee--EEEcC----CCC-----------------E
Q 000177 1551 QAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGCKA--ARFSN----SGN-----------------L 1606 (1922)
Q Consensus 1551 ss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh~s--VaFSP----DG~-----------------~ 1606 (1922)
.-.+.+| ..+|++++.++.+ -|.|.|+|+.+ +..++.++|.+. +.|.. ..+ .
T Consensus 307 ~R~~~~i--~~sP~~~laA~tDslGRV~LiD~~~--~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 307 KREGESI--CLSPSGRLAAVTDSLGRVLLIDVAR--GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CceEEEE--EECCCCCEEEEEcCCCcEEEEECCC--ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 4456677 7899999888875 68999999998 788888988633 23321 111 1
Q ss_pred EEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1607 FAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1607 LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
++.. ...|.|-||.+++|..+..+.
T Consensus 383 vIya---prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYA---PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEe---ccCCeEEEEecCCCCEEEEEE
Confidence 2233 577899999999999888775
No 447
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=54.83 E-value=79 Score=40.73 Aligned_cols=86 Identities=10% Similarity=0.115 Sum_probs=57.2
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCC-eeEEEeeecCC----------------C
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAP-VTLVQSHLSGE----------------T 1565 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~-VtsLq~afSpD----------------G 1565 (1922)
.|.+.. -.+.++..+|++++.|+...=|.|.++|+.++..++.++|=.+. +.-++ ..... .
T Consensus 302 ~l~D~~-R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~-~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 302 GLPDSK-REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIE-VPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred eeccCC-ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEE-eecccccccccccccCCCCcce
Confidence 345555 66889999999999999888899999999999888877664332 11111 11111 1
Q ss_pred cEEEE-e-cCCcEEEeccCCCCCCcceEe
Q 000177 1566 QLLLS-S-SSQDVHLWNASSIAGGPMHSF 1592 (1922)
Q Consensus 1566 ~lLaS-S-sDgtVkLWDl~t~~gk~l~tf 1592 (1922)
.+|+- . .-|.|-||.++. +..+..|
T Consensus 380 l~LvIyaprRg~lEvW~~~~--g~Rv~a~ 406 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQ--GPRVAAF 406 (415)
T ss_pred EEEEEEeccCCeEEEEecCC--CCEEEEE
Confidence 23333 3 478899999987 5555444
No 448
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=54.80 E-value=59 Score=39.70 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=61.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-ceeee-ccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS-PLESC-TSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk-~l~tL-~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~g 1586 (1922)
++|++++-- +|. |+.+. .+.|.+|++...+ ....- ......|.++ .. .+.+|+.|+ ...+.++.++.. .
T Consensus 89 g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl--~~--~~~~I~vgD~~~sv~~~~~~~~-~ 160 (321)
T PF03178_consen 89 GPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSL--SV--FKNYILVGDAMKSVSLLRYDEE-N 160 (321)
T ss_dssp S-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEE--EE--ETTEEEEEESSSSEEEEEEETT-T
T ss_pred CcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEE--ec--cccEEEEEEcccCEEEEEEEcc-C
Confidence 789998766 344 44444 4789999998777 33322 2223367777 33 244777765 666777655431 1
Q ss_pred CcceEec------cceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1587 GPMHSFE------GCKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1587 k~l~tf~------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
..+..+. ...++.|-++++.++.+ ..+|.+.++...
T Consensus 161 ~~l~~va~d~~~~~v~~~~~l~d~~~~i~~---D~~gnl~~l~~~ 202 (321)
T PF03178_consen 161 NKLILVARDYQPRWVTAAEFLVDEDTIIVG---DKDGNLFVLRYN 202 (321)
T ss_dssp E-EEEEEEESS-BEEEEEEEE-SSSEEEEE---ETTSEEEEEEE-
T ss_pred CEEEEEEecCCCccEEEEEEecCCcEEEEE---cCCCeEEEEEEC
Confidence 2122221 13677787666777777 778888888765
No 449
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=53.49 E-value=15 Score=49.77 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEe---------eecCCCcEEEE-ecCCcEEEecc
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQS---------HLSGETQLLLS-SSSQDVHLWNA 1581 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~---------afSpDG~lLaS-SsDgtVkLWDl 1581 (1922)
|.-|-|-++.-++..|-.+++|++.++++... ..|.+|...+..+++ ..||||+.+++ ++||.++.|.+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 44444555677888899999999988765433 445668877766621 23555555555 44555555544
No 450
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=53.28 E-value=16 Score=36.73 Aligned_cols=30 Identities=27% Similarity=0.176 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHcCCC
Q 000177 1169 RELLLLIHEHLQASGLVTTAAQLLKEAQLT 1198 (1922)
Q Consensus 1169 ~ELL~LI~~HL~~~GL~~TA~~L~kEA~L~ 1198 (1922)
+-+..||.|.|+..||.-|+++++.|+|++
T Consensus 19 ~Li~eLIrEyLef~~l~~TlsVf~~Es~~~ 48 (81)
T PF09398_consen 19 RLINELIREYLEFNNLDYTLSVFQPESGQP 48 (81)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHcCCccHHHHHhhccCCC
Confidence 356899999999999999999999999993
No 451
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=51.97 E-value=13 Score=47.55 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=9.7
Q ss_pred HHHHHhCccccHHHHHH
Q 000177 1071 ACRVLLGLARDDTIAHI 1087 (1922)
Q Consensus 1071 AcraL~GLaR~~~vrqI 1087 (1922)
-|.+|.|.-|.--++||
T Consensus 369 ~savLtG~nRa~pfa~l 385 (821)
T COG5593 369 GSAVLTGCNRAGPFALL 385 (821)
T ss_pred HHHHHhcccccCchhhh
Confidence 46666665555555544
No 452
>PHA03098 kelch-like protein; Provisional
Probab=51.59 E-value=2.5e+02 Score=36.87 Aligned_cols=105 Identities=8% Similarity=0.090 Sum_probs=49.2
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCCceee--eccCCCCeeEEEeeecCCCcEEEEec-C-----CcEEEeccCCCC
Q 000177 1520 DSSHIAVGSHTK------ELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGETQLLLSSS-S-----QDVHLWNASSIA 1585 (1922)
Q Consensus 1520 DG~lLASGS~DG------tIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpDG~lLaSSs-D-----gtVkLWDl~t~~ 1585 (1922)
++.+++.|+.++ .+..||..+++.... +.........+ .. ++++++.|+ + .++..||..+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 345556665432 467788766554221 11111111122 22 566666643 3 247778877622
Q ss_pred CCcceEecc---ceeEEEcCCCCEEEEeecCCCC---CeEEEEECCCCce
Q 000177 1586 GGPMHSFEG---CKAARFSNSGNLFAALPTETSD---RGILLYDIQTYQL 1629 (1922)
Q Consensus 1586 gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~D---gtIrIWDlrTgk~ 1629 (1922)
......+.. ..+++ .-+++.++.|+....+ +.+..||..+.+-
T Consensus 370 W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 370 WREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred eeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 111111111 12222 2356667776322122 4688999887553
No 453
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=51.03 E-value=5.8e+02 Score=31.77 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=23.5
Q ss_pred ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1595 CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1595 h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
-+.++|.|+|+.|++ ...|.|++++ ..+..
T Consensus 4 P~~~a~~pdG~l~v~----e~~G~i~~~~-~~g~~ 33 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA----ERSGRIWVVD-KDGSL 33 (331)
T ss_dssp EEEEEEETTSCEEEE----ETTTEEEEEE-TTTEE
T ss_pred ceEEEEeCCCcEEEE----eCCceEEEEe-CCCcC
Confidence 378999999998887 4589999999 44443
No 454
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=50.83 E-value=16 Score=48.04 Aligned_cols=8 Identities=25% Similarity=0.102 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 000177 1422 LDSLVVQY 1429 (1922)
Q Consensus 1422 LdsIVtqy 1429 (1922)
+.-+..|+
T Consensus 245 ~~l~~KQ~ 252 (811)
T KOG4364|consen 245 EKLLLKQL 252 (811)
T ss_pred hhHHHHHH
Confidence 33333333
No 455
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=50.36 E-value=5.2e+02 Score=30.98 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=52.9
Q ss_pred CeeEEEeeecCCCcEEEE-e-cCC--cEEEeccCCCCCCcceEec--cceeEEEcCCCCEEEEeecCCCCCeEEEE-ECC
Q 000177 1553 PVTLVQSHLSGETQLLLS-S-SSQ--DVHLWNASSIAGGPMHSFE--GCKAARFSNSGNLFAALPTETSDRGILLY-DIQ 1625 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~lLaS-S-sDg--tVkLWDl~t~~gk~l~tf~--gh~sVaFSPDG~~LaSgS~~S~DgtIrIW-Dlr 1625 (1922)
.+.+. +.+++++.++. . .++ .+.++.... .....+. ......|++++...+.. ..+...+++ +..
T Consensus 25 ~~~s~--AvS~dg~~~A~v~~~~~~~~L~~~~~~~---~~~~~~~g~~l~~PS~d~~g~~W~v~---~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSP--AVSPDGSRVAAVSEGDGGRSLYVGPAGG---PVRPVLTGGSLTRPSWDPDGWVWTVD---DGSGGVRVVRDSA 96 (253)
T ss_pred cccce--EECCCCCeEEEEEEcCCCCEEEEEcCCC---cceeeccCCccccccccCCCCEEEEE---cCCCceEEEEecC
Confidence 56677 88999997776 3 244 455554432 2222223 34778899997776665 344445555 333
Q ss_pred CCceeee-eccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1626 TYQLEAK-LSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1626 Tgk~i~t-L~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
++..... +. . . .....+..+.+||||..++
T Consensus 97 ~g~~~~~~v~-~--~--~~~~~I~~l~vSpDG~RvA 127 (253)
T PF10647_consen 97 SGTGEPVEVD-W--P--GLRGRITALRVSPDGTRVA 127 (253)
T ss_pred CCcceeEEec-c--c--ccCCceEEEEECCCCcEEE
Confidence 3332221 11 0 0 0111455599999998766
No 456
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=48.88 E-value=3.6e+02 Score=29.96 Aligned_cols=112 Identities=12% Similarity=0.159 Sum_probs=68.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCC--------ceeeeccCCCCeeEEEe-eec--CCCcEEEEecCCcEEEecc
Q 000177 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSS--------PLESCTSHQAPVTLVQS-HLS--GETQLLLSSSSQDVHLWNA 1581 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~DGtIkIWDl~tgk--------~l~tL~gHss~VtsLq~-afS--pDG~lLaSSsDgtVkLWDl 1581 (1922)
..-+|......|+.++.-|.|.|++..... .+..+. -...|++|+. .+. .+...|+.|+..++..||+
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV 80 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV 80 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence 445677666788889999999999875332 233332 3567888854 343 3456888899999999999
Q ss_pred CCCCCCcce--Ee-ccceeEEEcC----CCCEEEEeecCCCCCeEEEEECCCCceee
Q 000177 1582 SSIAGGPMH--SF-EGCKAARFSN----SGNLFAALPTETSDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1582 ~t~~gk~l~--tf-~gh~sVaFSP----DG~~LaSgS~~S~DgtIrIWDlrTgk~i~ 1631 (1922)
.. ..-++ .+ .+++++.+-. ....++.| ....|.-||..-.....
T Consensus 81 ~~--N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG----Gncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 81 EN--NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG----GNCSIQGFDYEGNEIFW 131 (136)
T ss_pred cc--CchhhhhhCccceeEEEEEecCCCCCcEEEEC----ceEEEEEeCCCCcEEEE
Confidence 86 22221 12 3456666633 23444443 34556667765444433
No 457
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=48.61 E-value=19 Score=46.18 Aligned_cols=101 Identities=21% Similarity=0.324 Sum_probs=0.0
Q ss_pred EEEEEecCCCCCCCCCCCCC---------CCCCcCccCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000177 1805 ARIYEIGRRRPTEDDSDPDD---------AESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDED 1875 (1922)
Q Consensus 1805 VRLyEVGr~r~~EDDeDdED---------edDeDDDEDDDDDEDdD~il~~~~dGDdDsDDDDddDDDDDDDeEEDDDDD 1875 (1922)
.+-|+.+......+++|+|+ +.++.+|++++|++.++ +..+++..+..||.=+|.+-++-.|++-+.
T Consensus 59 lrrvesa~~~e~~Ed~deE~~~~g~asgsdsEe~ed~~~Edge~~e----EnskgE~ks~~ddaVndStkeeKgde~~~n 134 (694)
T KOG4264|consen 59 LRRVESAKPAESVEDDDEEPAPAGKASGSDSEEKEDEAAEDGEEDE----ENSKGEEKSNLDDAVNDSTKEEKGDENVEN 134 (694)
T ss_pred hhcccccCccccccccccccccccccccCCcccccccccccCcccc----ccccchhhhhhhhhhcchhhhhhcccCccC
Q ss_pred ------CCCCCCCCCCCCCCCCccccccCCCCcchhhhhh
Q 000177 1876 ------DGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLVE 1909 (1922)
Q Consensus 1876 ------DgD~~~ddeD~dgg~~~~ei~~d~dedDd~~~~e 1909 (1922)
.+-|.+-|+--...++...+..+--+||+++.-+
T Consensus 135 p~yIpk~g~fy~hddsTe~~eg~v~~~g~~~~dd~~dr~N 174 (694)
T KOG4264|consen 135 PAYIPKTGRFYMHDDSTENREGDVNNSGQVQDDDSDDRRN 174 (694)
T ss_pred cccccccccccccccccccccccccccccccccchhhccc
No 458
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=48.56 E-value=1.8e+02 Score=34.37 Aligned_cols=102 Identities=14% Similarity=0.273 Sum_probs=0.0
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEECC--CCCceeeeccCCCCeeEEEeeecCCCcEEEE----ecCC---cEEE---eccC
Q 000177 1516 TFLGDS-SHIAVGSHTKELKIFDSN--SSSPLESCTSHQAPVTLVQSHLSGETQLLLS----SSSQ---DVHL---WNAS 1582 (1922)
Q Consensus 1516 aFSPDG-~lLASGS~DGtIkIWDl~--tgk~l~tL~gHss~VtsLq~afSpDG~lLaS----SsDg---tVkL---WDl~ 1582 (1922)
++..-| +.|+.+...+.|.+|++. ..+...+|..- +.|..+ .++..|.+|+| .... .+++ |...
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l--~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQL--VYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEE--EeccccceEEEEEeecCCccceEEEEEEEhhhh
Q ss_pred CCCCCcce-Eeccc-------------------------eeEEEcC-CCCEEEEeecCCCCCeEEEEECC
Q 000177 1583 SIAGGPMH-SFEGC-------------------------KAARFSN-SGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1583 t~~gk~l~-tf~gh-------------------------~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
.....++. .+-|| .+++-.| .|+.++.+ ++++.||-+.
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-----~~~l~lf~l~ 163 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-----GNKLVLFTLK 163 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-----CCEEEEEEEE
No 459
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=48.28 E-value=28 Score=41.08 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCC-CCeeEEEeeecCCCcEEEE---ecCCcEEEeccCC
Q 000177 1509 GALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQ-APVTLVQSHLSGETQLLLS---SSSQDVHLWNASS 1583 (1922)
Q Consensus 1509 d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHs-s~VtsLq~afSpDG~lLaS---SsDgtVkLWDl~t 1583 (1922)
+....-+.-..++.+..+|..||.|+.|++..++.+.....|+ .++... ..+..+.+|.. |.|..++.|++..
T Consensus 102 e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~--ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 102 ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL--IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee--EEecCCceEEeeccccchhhhhcchhh
No 460
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=47.82 E-value=42 Score=37.84 Aligned_cols=86 Identities=22% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHhhhcCCCc-hhhHHHHHHHHhccceEEEeecchhhhhhhccccCCccchHHHHhhhh--ccCCCCC
Q 000177 827 VDRFLSLNGHITLLELCQAPPV-ERYLHDLLQYALGVLHIVTLVPNSRKMIVNATLSNNHTGIAVILDAAN--AVSSYVD 903 (1922)
Q Consensus 827 vd~f~~l~g~~~lL~l~~~~~~-~r~~~e~v~~aL~vL~i~tvvP~~r~~l~~~~~s~~~~Gi~ilL~~a~--~g~~~~D 903 (1922)
+.+|...+|+.+|++++..... .-+..+++.|+|-. .+.++-.+..+=.......|-.+|. .+... |
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~a---------f~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~-d 73 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTA---------FVELMEHGIVSWDTLSDSFIKKIASYVNSSAM-D 73 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHH---------HHHHHhcCcCchhhccHHHHHHHHHHHccccc-c
Q ss_pred ccchhHHHHHhhhcccCCC
Q 000177 904 PEIIQPALNVLINLVCPPP 922 (1922)
Q Consensus 904 ~ev~~~AL~Vl~ncVc~P~ 922 (1922)
+.|++.||.+|-+.|...+
T Consensus 74 ~~i~q~sLaILEs~Vl~S~ 92 (160)
T PF11841_consen 74 ASILQRSLAILESIVLNSP 92 (160)
T ss_pred chHHHHHHHHHHHHHhCCH
No 461
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=47.81 E-value=9.6 Score=42.68 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=0.0
Q ss_pred hHHHHhccccchhhhccCCCccc---ccccceeeehhcchhhHHHHhh----cCChhhHHHHHHHH
Q 000177 606 FAALFVDRGGMQKLLAVPRNNQT---FFGLSSCLFTIGSLQGIMERVC----ALPTDVVHQLVELA 664 (1922)
Q Consensus 606 fA~eFV~~gGlq~LL~vPR~s~a---~tgvS~Clyylay~~~aMERvC----~lp~~vl~~lV~ya 664 (1922)
||.|||.+||+..|+++-...-. ..|-.+++ .|..+.+-||-=- .++...+..++.|.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~-~L~af~eLMeHg~vsWd~l~~~FI~Kia~~V 67 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAY-ALTAFVELMEHGIVSWDTLSDSFIKKIASYV 67 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHH-HHHHHHHHHhcCcCchhhccHHHHHHHHHHH
No 462
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=47.14 E-value=1.1e+02 Score=41.23 Aligned_cols=128 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred CcEEEEECC--------CCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEeccc---eeE
Q 000177 1531 KELKIFDSN--------SSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC---KAA 1598 (1922)
Q Consensus 1531 GtIkIWDl~--------tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh---~sV 1598 (1922)
|.|+.|... ......++..--....-+ .-|.-++..+. ++..++.|||.+...-+....|..+ ..+
T Consensus 1 g~~~~~~a~v~~~~~~~~w~~t~~~~T~i~~~~li--~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dL 78 (631)
T PF12234_consen 1 GRIRTWTARVDTESNKIEWLLTSTFETGISNPSLI--SGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDL 78 (631)
T ss_pred CeeEEEEEEEcCCCCeEEEEEEEEEecCCCCcceE--eecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeec
Q ss_pred EEcC--CCCEEEEeecCCCCCeEEEE---------ECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc---E
Q 000177 1599 RFSN--SGNLFAALPTETSDRGILLY---------DIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG---I 1664 (1922)
Q Consensus 1599 aFSP--DG~~LaSgS~~S~DgtIrIW---------DlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---r 1664 (1922)
.|.. +|+.+++. +-.+.|.+| ...+...+..+.-..... |++....|.++|.+++..| .
T Consensus 79 DWtst~d~qsiLaV---Gf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~----h~Igds~Wl~~G~LvV~sGNqlf 151 (631)
T PF12234_consen 79 DWTSTPDGQSILAV---GFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP----HPIGDSIWLKDGTLVVGSGNQLF 151 (631)
T ss_pred eeeecCCCCEEEEE---EcCcEEEEEEccchhhhcCCcccceeEEEEeecCCC----CCccceeEecCCeEEEEeCCEEE
Q ss_pred EEE
Q 000177 1665 LWD 1667 (1922)
Q Consensus 1665 LWD 1667 (1922)
++|
T Consensus 152 v~d 154 (631)
T PF12234_consen 152 VFD 154 (631)
T ss_pred EEC
No 463
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.98 E-value=19 Score=42.85 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcchhhhhh
Q 000177 1855 EGDDLSNSDEDDSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLVE 1909 (1922)
Q Consensus 1855 DDDDddDDDDDDDeEEDDDDDDgD~~~ddeD~dgg~~~~ei~~d~dedDd~~~~e 1909 (1922)
.+|++|+|-..+++++++.++|.||+++++|++ +++||++.+.++.
T Consensus 36 ~Eee~D~ef~~~~~eed~~~~Dsdf~~se~de~---------~~~~e~e~e~~~~ 81 (240)
T PF05764_consen 36 QEEEDDEEFESEEEEEDEEEDDSDFDDSEDDED---------ESDDEEEGEKELR 81 (240)
T ss_pred cccCCCccccCCCccccccccccccCccccCCC---------CCcccchhhhHHH
No 464
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=45.87 E-value=4.7 Score=45.39 Aligned_cols=65 Identities=29% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcchhhhhhccCCCCcccc
Q 000177 1851 DGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLSSGDEEDF 1919 (1922)
Q Consensus 1851 DdDsDDDDddDDDDDDDeEEDDDDDDgD~~~ddeD~dgg~~~~ei~~d~dedDd~~~~e~~~~~de~~~ 1919 (1922)
+++++++++.+|++.+++++++++++++.+.++++..+. +...++++.--....+..+-.+|++|
T Consensus 1 ~~~~~~~dg~dd~~~~~~d~d~~~~dee~~~~~d~~~d~----~~~~e~e~~~~~~~~~~~~~~~e~dF 65 (170)
T PF04050_consen 1 GSDSDDDDGEDDEESDEEDEDDDSEDEEEEDDEDDESDE----ESEDEEEEVVVRREREEEDPEEEEDF 65 (170)
T ss_dssp -------------------------------------------------------------S--HHHHH
T ss_pred CCccccccCCccccccccccCcccccccccccccccccc----cccccchhhhhcccccccCcchHHHH
No 465
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.47 E-value=14 Score=44.03 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccccCCCCcchhhhhhccC
Q 000177 1871 LDDEDDGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLS 1912 (1922)
Q Consensus 1871 DDDDDDgD~~~ddeD~dgg~~~~ei~~d~dedDd~~~~e~~~ 1912 (1922)
.|+++|++|..++++++...++.||+++++|+++++++++.+
T Consensus 36 ~Eee~D~ef~~~~~eed~~~~Dsdf~~se~de~~~~~e~e~e 77 (240)
T PF05764_consen 36 QEEEDDEEFESEEEEEDEEEDDSDFDDSEDDEDESDDEEEGE 77 (240)
T ss_pred cccCCCccccCCCccccccccccccCccccCCCCCcccchhh
No 466
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.06 E-value=3.5e+02 Score=35.80 Aligned_cols=188 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCCCCCcccCCCCCCCCCCCCcceeecccccceecccCCccccccceee----------ecCceeeEEecCCCCCCEEEE
Q 000177 1446 PLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFV----------YSRFRPWRTCRDDAGALLTCI 1515 (1922)
Q Consensus 1446 pfSLl~pH~CPePk~~lsAP~N~aaRl~sr~l~~~~Gg~~g~r~dr~fi----------~srfrpirtLrgH~d~~Vt~L 1515 (1922)
|..++.|.....|....--+.|+......+.+ .|.+.+.....++|. ...++.+.-...-. -.|..+
T Consensus 33 ptea~~p~s~~lP~V~~l~trN~~~~~gD~lf--~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~-feV~~v 109 (741)
T KOG4460|consen 33 PTEAEKPASSSLPSVPPLLTRNVVFGLGDELF--LWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVL-FEVYQV 109 (741)
T ss_pred chhhcccccCCCCCCccccccchhcccCCEEE--EEecCcceEEEEEeccCCCCcccccccccceeccCCcce-EEEEEE
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc
Q 000177 1516 TFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC 1595 (1922)
Q Consensus 1516 aFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh 1595 (1922)
..++.|..++..+.+|.+.++=....-.-..|......|+|= .++-+.+++.++ ..+.+-...
T Consensus 110 l~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CR--t~~i~~~~ftss--~~ltl~Qa~------------- 172 (741)
T KOG4460|consen 110 LLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCR--TTPVAERFFTSS--TSLTLKQAA------------- 172 (741)
T ss_pred EecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEE--eecccceeeccC--Cceeeeecc-------------
Q ss_pred eeEEEcCCC---CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1596 KAARFSNSG---NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1596 ~sVaFSPDG---~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
|||+. ..++.- +.|++|++||+.....+.....+.... +....++.|---.-++...+
T Consensus 173 ----WHP~S~~D~hL~iL---~sdnviRiy~lS~~telylqpgepgRS---~tn~Si~sFGe~~~~~l~~~ 233 (741)
T KOG4460|consen 173 ----WHPSSILDPHLVLL---TSDNVIRIYSLSEPTELYLQPGEPGRS---PTNVSILSFGEEESLVLNKG 233 (741)
T ss_pred ----ccCCccCCceEEEE---ecCcEEEEEecCCcchhhccCCCcCCC---CccceeeccCCcceeeeccC
No 467
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=44.96 E-value=8.4e+02 Score=31.84 Aligned_cols=224 Identities=14% Similarity=0.203 Sum_probs=0.0
Q ss_pred ccceeeecCceeeEEecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC----ceeeeccCCCCeeEEEe-eec
Q 000177 1489 RDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSS----PLESCTSHQAPVTLVQS-HLS 1562 (1922)
Q Consensus 1489 ~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk----~l~tL~gHss~VtsLq~-afS 1562 (1922)
..+.|+..+...--.|.... -.|-.+.-+++++ .|++||..|.++||+...+. .+.--..-..+|..|.+ .|.
T Consensus 5 k~rewWst~~~~~e~~d~~~-l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~ 83 (418)
T PF14727_consen 5 KTREWWSTKCGENEEFDQGS-LCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFV 83 (418)
T ss_pred cchheeeccCCCCCcCcCce-EEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEecccc
Q ss_pred C--CCcEEEEecCCcEEEeccCCCCCC-------cceEeccc---------eeEEEcCCC--CEEEEeecCCCCCeEEEE
Q 000177 1563 G--ETQLLLSSSSQDVHLWNASSIAGG-------PMHSFEGC---------KAARFSNSG--NLFAALPTETSDRGILLY 1622 (1922)
Q Consensus 1563 p--DG~lLaSSsDgtVkLWDl~t~~gk-------~l~tf~gh---------~sVaFSPDG--~~LaSgS~~S~DgtIrIW 1622 (1922)
+ +...|+.=.-..+.||.+....+. .+..+..| .+..|-... .+|..= +.||++.+|
T Consensus 84 s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQ---S~DG~L~~f 160 (418)
T PF14727_consen 84 SGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQ---SMDGSLSFF 160 (418)
T ss_pred CCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEE---ecCceEEEE
Q ss_pred ECCCCceeeeeccccccccCCCCcceE-EEEcCCCCeEeecc-------------------EEE---------EcCCCcc
Q 000177 1623 DIQTYQLEAKLSDTSVNLTGRGHAYSQ-IHFSPSDTMLLWNG-------------------ILW---------DRRNSVP 1673 (1922)
Q Consensus 1623 DlrTgk~i~tL~d~s~~~~~~gh~~~v-VaFSPdG~lLaSgg-------------------rLW---------Dlrtgk~ 1673 (1922)
+-+.......++ +.-.+. ++|.|.-..+++++ .-| .-+.-.+
T Consensus 161 eqe~~~f~~~lp---------~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~ 231 (418)
T PF14727_consen 161 EQESFAFSRFLP---------DFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNP 231 (418)
T ss_pred eCCcEEEEEEcC---------CCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccc
Q ss_pred eeeeccCCCce---EEEEecCCCEEEEEeE--EEecCCCeEEEEEcCCCceeEEEcc
Q 000177 1674 VHRFDQFTDHG---GGGFHPAGNEVIINSE--VWDLRKFRLLRSVPSLDQTTITFNA 1725 (1922)
Q Consensus 1674 I~kf~gh~~~V---sVaFSPdG~~LASGSe--IWDLrTgklL~tl~gH~~~sVaFSP 1725 (1922)
-.+|.-....+ .+.++.+...|++-++ ++-++..-.++..+-++....+|.+
T Consensus 232 dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~~~krLd~~p~~~~~ 288 (418)
T PF14727_consen 232 DWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLRFQKRLDYNPSCFCP 288 (418)
T ss_pred eeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEEEEEecCCceeeEEE
No 468
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=44.77 E-value=16 Score=42.26 Aligned_cols=88 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCcCccCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 000177 1814 RPTEDDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVDYDGGGGLL 1893 (1922)
Q Consensus 1814 r~~EDDeDdEDedDeDDDEDDDDDEDdD~il~~~~dGDdDsDDDDddDDDDDDDeEEDDDDDDgD~~~ddeD~dgg~~~~ 1893 (1922)
++.-|++++|+..+.++.++++|+++.+..-++....-..+++++.+.+++.++.-|.+..+-+....+++..+..-+.+
T Consensus 171 qpdvd~EeeE~~eE~d~~EeeeDee~~~~~~gEg~~e~~eeeeEE~egs~dgE~~~d~ege~i~~~~g~eee~eeev~~~ 250 (279)
T COG5137 171 QPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINL 250 (279)
T ss_pred CCCCCchhhhhhhhhccchhhhhhccccccccccchhhhhhhhhhhccCCCCccccccccccccccccchhhcCcccchh
Q ss_pred ccccCCCC
Q 000177 1894 EIVTEGDE 1901 (1922)
Q Consensus 1894 ei~~d~de 1901 (1922)
+-.++++|
T Consensus 251 ~e~E~~~e 258 (279)
T COG5137 251 FEIEWEEE 258 (279)
T ss_pred hhhhhccc
No 469
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=44.45 E-value=12 Score=50.91 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCcCccCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 000177 1818 DDSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVT 1897 (1922)
Q Consensus 1818 DDeDdEDedDeDDDEDDDDDEDdD~il~~~~dGDdDsDDDDddDDDDDDDeEEDDDDDDgD~~~ddeD~dgg~~~~ei~~ 1897 (1922)
|..+-++..+.+.+...++....| .....|+-++++...+|+|+||++++.++.++-....--||+ ..+.+++.+
T Consensus 12 e~~~~~~~~e~ek~~lg~k~~~~d----~~~~~de~~~~~~~i~d~e~dde~v~~e~~e~v~~~~~~~f~-s~~~e~~~d 86 (895)
T KOG2076|consen 12 EQFMRPSNMEREKEVLGEKTNLSD----ENNNDDEIDDEDRDIDDEEEDDEDVESEDVEGVEASEHPDFE-SSLYESLAD 86 (895)
T ss_pred HHHcCccchhhhhHHhcccccchh----hcCCcccccchhccccchhhccCCCchhhhhhhhcccccccc-cccchhhcc
Q ss_pred CCCCcchhhhhhccCCCCc
Q 000177 1898 EGDEDEDSQLVESLSSGDE 1916 (1922)
Q Consensus 1898 d~dedDd~~~~e~~~~~de 1916 (1922)
++++..|+++++...+=++
T Consensus 87 ~~ee~~deee~~~n~~~e~ 105 (895)
T KOG2076|consen 87 EKEEAEDEEESEANETYEE 105 (895)
T ss_pred ccchhhccccchhhccccc
No 470
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=44.32 E-value=8.8e+02 Score=31.93 Aligned_cols=174 Identities=11% Similarity=0.141 Sum_probs=0.0
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCC---eeEEEeeecCCCcEEEEec--------------CCcEE
Q 000177 1515 ITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAP---VTLVQSHLSGETQLLLSSS--------------SQDVH 1577 (1922)
Q Consensus 1515 LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~---VtsLq~afSpDG~lLaSSs--------------DgtVk 1577 (1922)
+.+.++|.+++..+ ..++.+|+ .|+.+..+.--... =..+ .+-|+|++|+.+. .-.|.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~--~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Iv 227 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDI--DELPNGNLLILASETKYVDEDKDVDTVEDVIV 227 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-E--EE-TTS-EEEEEEETTEE-TS-EE---S-EEE
T ss_pred eeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCccccccccc--EECCCCCEEEEEeecccccCCCCccEecCEEE
Q ss_pred EeccCCCCCCcceEecc------------------------------c-eeEEEcC-CCCEEEEeecCCCCCeEEEEECC
Q 000177 1578 LWNASSIAGGPMHSFEG------------------------------C-KAARFSN-SGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~g------------------------------h-~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
.+| .+ ++.+..+.- | +++.+.+ ++..++++ -.-..|...|.+
T Consensus 228 evd-~t--G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSs---R~~s~V~~Id~~ 301 (477)
T PF05935_consen 228 EVD-PT--GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSS---RHQSAVIKIDYR 301 (477)
T ss_dssp EE--TT--S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEE---TTT-EEEEEE-T
T ss_pred EEC-CC--CCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEc---CcceEEEEEECC
Q ss_pred CCceeeeeccccccccC-------------------CCCcceE-----EEEcCCC---CeEeecc---------------
Q 000177 1626 TYQLEAKLSDTSVNLTG-------------------RGHAYSQ-----IHFSPSD---TMLLWNG--------------- 1663 (1922)
Q Consensus 1626 Tgk~i~tL~d~s~~~~~-------------------~gh~~~v-----VaFSPdG---~lLaSgg--------------- 1663 (1922)
+++....+.++..-... .+..... +.+.|+| .+++-..
T Consensus 302 t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~~~ 381 (477)
T PF05935_consen 302 TGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGRGYGQPAYVSPK 381 (477)
T ss_dssp TS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTGGGS--SSCCG-
T ss_pred CCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCCCCCCccccccc
Q ss_pred ------EEEEcCCC----cceeeecc------CCCce-EEEEecC-CCEEEEEe
Q 000177 1664 ------ILWDRRNS----VPVHRFDQ------FTDHG-GGGFHPA-GNEVIINS 1699 (1922)
Q Consensus 1664 ------rLWDlrtg----k~I~kf~g------h~~~V-sVaFSPd-G~~LASGS 1699 (1922)
..|.+... +.+..|.. ++..+ ++.+-++ |++|+..+
T Consensus 382 ~~~Sr~v~Y~Ide~~~T~~~vw~y~~~~g~~~yS~~~s~aq~l~n~gn~li~~g 435 (477)
T PF05935_consen 382 DNYSRAVEYRIDENKMTVEQVWEYGKPRGNEFYSPIVSSAQYLPNKGNTLITSG 435 (477)
T ss_dssp ----EEEEEEEETTTTEEEEEEEESGGGGGGG--SS--EEEEETTTTEEEEEEE
T ss_pred cccceEEEEEecCCCceEEEEEEeCCCCCCCccCCcceeeEEecCCCCEEEEeC
No 471
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=44.09 E-value=30 Score=29.49 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccHHHHHHhhccccCCCCchhhHHHHHHHHHHhCccc
Q 000177 1034 RQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLAR 1080 (1922)
Q Consensus 1034 ~~~~~~VR~nnGIkvLL~LL~~k~~~Pit~aD~iRaLAcraL~GLaR 1080 (1922)
.+.++.|...+||..|+.||. . .-..+|.=||.||.-|||
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~-~------~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLK-S------PDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTT-S------SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHc-C------CCHHHHHHHHHHHHHHhC
No 472
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.09 E-value=14 Score=45.86 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000177 1846 ADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVD 1885 (1922)
Q Consensus 1846 ~~~dGDdDsDDDDddDDDDDDDeEEDDDDDDgD~~~ddeD 1885 (1922)
+....+..+|+||+++||+++..++++.|.|.+...-++.
T Consensus 266 ~~~ss~~edD~Dddd~dDdeeN~ddd~~d~d~e~~~v~dN 305 (514)
T KOG3130|consen 266 NGSSSYHEDDDDDDDDDDDEENIDDDDGDNDHEALGVGDN 305 (514)
T ss_pred cCCCCccccccccccccchhhcccccccccchhhhccCCC
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=43.78 E-value=5.4e+02 Score=35.94 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCCEEEEEEcC-CCCEEEEEeCCCcEEEEEC-----CCCCceeeeccCCCCe------e----EEEeeecCCCcEEEEec
Q 000177 1509 GALLTCITFLG-DSSHIAVGSHTKELKIFDS-----NSSSPLESCTSHQAPV------T----LVQSHLSGETQLLLSSS 1572 (1922)
Q Consensus 1509 d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl-----~tgk~l~tL~gHss~V------t----sLq~afSpDG~lLaSSs 1572 (1922)
+.+...++|+| +.+.||+-...|...||++ .....+.....+.+.| . .| .|.++-..|+.++
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI--~W~~~~~~lLv~~ 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRI--LWVSDSNRLLVCN 222 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceee--EecCCCCEEEEEc
Q ss_pred CCcEEEeccCCCCCCcce------EeccceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1573 SQDVHLWNASSIAGGPMH------SFEGCKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~------tf~gh~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
...+.++|+.+ ..... +...+..+.-+|. +..|+.+ + ..|...|+..... .+.
T Consensus 223 r~~l~~~d~~~--~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT---s--~eiiw~~~~~~~~--~~~---------- 283 (765)
T PF10214_consen 223 RSKLMLIDFES--NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT---S--KEIIWLDVKSSSE--KLT---------- 283 (765)
T ss_pred CCceEEEECCC--CCccchhccCCChhheeeEEecCCccceEEEEe---c--CeEEEEEccCCCC--Cee----------
Q ss_pred CcceEEEEcCCCCeEeeccEEEEcCCCcceeeeccC-CCce-EEEEecCCCEEEE
Q 000177 1645 HAYSQIHFSPSDTMLLWNGILWDRRNSVPVHRFDQF-TDHG-GGGFHPAGNEVII 1697 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLaSggrLWDlrtgk~I~kf~gh-~~~V-sVaFSPdG~~LAS 1697 (1922)
.+++.-+.+|......--+.... .... ++.||+....+.+
T Consensus 284 -------------~llSwkH~~d~~D~tLrl~~~~~~~~~~~~~lyS~~~~~v~v 325 (765)
T PF10214_consen 284 -------------RLLSWKHFRDPEDPTLRLSVQKVGDTDFVVFLYSRLNPLVYV 325 (765)
T ss_pred -------------eeeecccccCCCCCceEEEEEEcCCCEEEEEEEcCCCCcEEE
No 474
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=43.17 E-value=17 Score=44.77 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcc-hhhhhhccCCCCc
Q 000177 1858 DLSNSDEDDSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVTEGDEDE-DSQLVESLSSGDE 1916 (1922)
Q Consensus 1858 DddDDDDDDDeEEDDDDDDgD~~~ddeD~dgg~~~~ei~~d~dedD-d~~~~e~~~~~de 1916 (1922)
|..-|.. +|+|+|+++++....+|++.+ .++|||+ |++.+|++++..|
T Consensus 254 Dg~~~~~--eE~e~Eee~~~~~~~~dee~~---------n~Dd~D~~EeeplnsedDvsd 302 (348)
T KOG2652|consen 254 DGTGDTS--EEDENEEEDDDPDPDEDEELG---------NSDDDDGVEEEPLNSEDDVSD 302 (348)
T ss_pred ccccccc--ccccccccccCcccchhhhcc---------cccccCccccccccCcccccc
No 475
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.88 E-value=7.6 Score=50.78 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcchhhhhhccCCCCcc-cccCC
Q 000177 1858 DLSNSDEDDSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLSSGDEE-DFIGF 1922 (1922)
Q Consensus 1858 DddDDDDDDDeEEDDDDDDgD~~~ddeD~dgg~~~~ei~~d~dedDd~~~~e~~~~~de~-~~~~~ 1922 (1922)
|+++++|..++.|+.+..++|.++++ |.++++-+.++..++-|+.+.|+..+++.++|+ +..+|
T Consensus 379 de~~~~dk~d~~ed~~m~ied~~~de-~~~~EE~~ds~~~~~~~~~~~d~~~D~~~dee~re~~e~ 443 (754)
T KOG1980|consen 379 DEEEESDKEDDNEDTEMEIEDEFEDE-DSDEEELRDSIEAGGTEAEESDGFYDESSDEEARESEEL 443 (754)
T ss_pred CCcccccccccccchhhhhhhhhhhc-cccchhhhccccccccchhhccccccccchhhHHhHHHH
No 476
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=42.66 E-value=22 Score=46.98 Aligned_cols=79 Identities=11% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcCccCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 000177 1819 DSDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVTE 1898 (1922)
Q Consensus 1819 DeDdEDedDeDDDEDDDDDEDdD~il~~~~dGDdDsDDDDddDDDDDDDeEEDDDDDDgD~~~ddeD~dgg~~~~ei~~d 1898 (1922)
+-.++..++.+++++++++++.+ ++++.+++.+++++..+..+.++.+......++++.+....-++...|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (600)
T TIGR01651 198 ELAEEMGDDTESEDEEDGDDDQP---------TENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPD 268 (600)
T ss_pred cccccccCCcccccccccccccc---------cccccccccccccccccccchhhhhccccccccccchhhccccccccc
Q ss_pred CCCcchhh
Q 000177 1899 GDEDEDSQ 1906 (1922)
Q Consensus 1899 ~dedDd~~ 1906 (1922)
+++++.++
T Consensus 269 ~~~~~~~~ 276 (600)
T TIGR01651 269 ESDDDSET 276 (600)
T ss_pred cccccccc
No 477
>PHA02713 hypothetical protein; Provisional
Probab=42.61 E-value=2.2e+02 Score=38.01 Aligned_cols=185 Identities=5% Similarity=-0.002 Sum_probs=0.0
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCc-----EEEeccCCCCCC
Q 000177 1520 DSSHIAVGSHT------KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQD-----VHLWNASSIAGG 1587 (1922)
Q Consensus 1520 DG~lLASGS~D------GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-Dgt-----VkLWDl~t~~gk 1587 (1922)
++.+.+.|+.+ .++..||..++.....-.-....-... ...-+|++.+.|+ ++. |..||..+....
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EEEECCEEEEECCcCCCCCCceEEEEECCCCeEE
Q ss_pred cceEeccc--eeEEEcCCCCEEEEeecCCCC-----------------------CeEEEEECCCCceeeeeccccccccC
Q 000177 1588 PMHSFEGC--KAARFSNSGNLFAALPTETSD-----------------------RGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1588 ~l~tf~gh--~sVaFSPDG~~LaSgS~~S~D-----------------------gtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
.+..+... ......-+|+.++.| +.+ ..+..||..+.+-...-+
T Consensus 381 ~~~~mp~~r~~~~~~~~~g~IYviG---G~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~-------- 449 (557)
T PHA02713 381 MLPDMPIALSSYGMCVLDQYIYIIG---GRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN-------- 449 (557)
T ss_pred ECCCCCcccccccEEEECCEEEEEe---CCCcccccccccccccccccccccccceEEEECCCCCeEeecCC--------
Q ss_pred CCCcceE-EEEcCCCCeEeecc-----------EEEEcCC---CcceeeeccCCCceEEEEecCCCEEEEEe-------E
Q 000177 1643 RGHAYSQ-IHFSPSDTMLLWNG-----------ILWDRRN---SVPVHRFDQFTDHGGGGFHPAGNEVIINS-------E 1700 (1922)
Q Consensus 1643 ~gh~~~v-VaFSPdG~lLaSgg-----------rLWDlrt---gk~I~kf~gh~~~VsVaFSPdG~~LASGS-------e 1700 (1922)
..+.... ....-+|++.+.|| ..||..+ ...+..+.......+++.. +|+..++|+ +
T Consensus 450 m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 450 FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTIMMLHCYESYMLQD 528 (557)
T ss_pred CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEEEEEeeecceeehh
Q ss_pred EEecCCCeEEEEEcCCCc
Q 000177 1701 VWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1701 IWDLrTgklL~tl~gH~~ 1718 (1922)
.||..+.+-...-+.|.+
T Consensus 529 ~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 529 TFNVYTYEWNHICHQHSN 546 (557)
T ss_pred hcCcccccccchhhhcCC
No 478
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=41.68 E-value=5.5e+02 Score=33.16 Aligned_cols=141 Identities=9% Similarity=0.009 Sum_probs=0.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEE-------e--
Q 000177 1509 GALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHL-------W-- 1579 (1922)
Q Consensus 1509 d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkL-------W-- 1579 (1922)
.+.+..+..++||.+++.|..-..++-||-........-..-...++.+ .+.+++.+++++..|.+.. |
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v--~~~~dg~l~l~g~~G~l~~S~d~G~~~~~ 315 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNM--GWRADGGLWLLTRGGGLYVSKGTGLTEED 315 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeee--eEcCCCCEEEEeCCceEEEecCCCCcccc
Q ss_pred -ccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1580 -NASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1580 -Dl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
++.. ...-..-.....+.|.+++..+++|..+ +.+.-...|+.........-.. .....+.|.++++.
T Consensus 316 ~~f~~--~~~~~~~~~l~~v~~~~d~~~~a~G~~G-----~v~~s~D~G~tW~~~~~~~~~~----~~ly~v~f~~~~~g 384 (398)
T PLN00033 316 FDFEE--ADIKSRGFGILDVGYRSKKEAWAAGGSG-----ILLRSTDGGKSWKRDKGADNIA----ANLYSVKFFDDKKG 384 (398)
T ss_pred cceee--cccCCCCcceEEEEEcCCCcEEEEECCC-----cEEEeCCCCcceeEccccCCCC----cceeEEEEcCCCce
Q ss_pred Eeec
Q 000177 1659 LLWN 1662 (1922)
Q Consensus 1659 LaSg 1662 (1922)
++++
T Consensus 385 ~~~G 388 (398)
T PLN00033 385 FVLG 388 (398)
T ss_pred EEEe
No 479
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=41.10 E-value=21 Score=47.67 Aligned_cols=83 Identities=18% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCCCCCCCCcCccCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCC
Q 000177 1820 SDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVTEG 1899 (1922)
Q Consensus 1820 eDdEDedDeDDDEDDDDDEDdD~il~~~~dGDdDsDDDDddDDDDDDDeEEDDDDDDgD~~~ddeD~dgg~~~~ei~~d~ 1899 (1922)
+++++.+.+.+-++++++. +.++..-.+.+=||+-..+++|+.+.+...++|++..++.++|.++.+. +++
T Consensus 285 E~erl~rm~~~~e~~e~~~----v~~~~~r~~~~~ddgk~l~~ED~~e~~~~~~~d~dg~~d~gD~~~~ed~-----~e~ 355 (823)
T KOG2147|consen 285 EAERLSRMDIDIESEESER----VQADDSRFEVDFDDGKGLEEEDTVEKSSILEEDLDGEDDSGDDEDGEDE-----EED 355 (823)
T ss_pred Hhhhhhhcccccccchhhh----hcccccccccccccccccccccchhhccccccCcccccccCcccccccc-----ccc
Q ss_pred CCcchhhhhhcc
Q 000177 1900 DEDEDSQLVESL 1911 (1922)
Q Consensus 1900 dedDd~~~~e~~ 1911 (1922)
+.-||+++.|++
T Consensus 356 ~~~edE~e~e~~ 367 (823)
T KOG2147|consen 356 DLLEDEEELEEE 367 (823)
T ss_pred ccccchhhhcch
No 480
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=40.87 E-value=1e+02 Score=42.39 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhccccchhhh
Q 000177 541 EKYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLL 620 (1922)
Q Consensus 541 q~~~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gGlq~LL 620 (1922)
..+++.||.-|--|.|-=..+.+.+.+.-+..|+.. ++..+.--+|++|..|--+...=..+|..|.+.+|.
T Consensus 307 lil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s--------~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv 378 (708)
T PF05804_consen 307 LILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS--------ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLV 378 (708)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC--------CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHH
Q ss_pred ccCCCcccccccceeeehhcchhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhcchhHHHHHhhhcc
Q 000177 621 AVPRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVFRAIIDAFDAQD 700 (1922)
Q Consensus 621 ~vPR~s~a~tgvS~Clyylay~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf~Fr~il~~FD~~d 700 (1922)
.+=. ....-.++++++|--+..+----+..- .+.+..+|++ |++++.+.-.+.+.-...-.-.-+--.+.+=+.+
T Consensus 379 ~LL~-d~~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~---Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~ 453 (708)
T PF05804_consen 379 ELLK-DPNFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQM---LLENSEEEVQLELIALLINLALNKRNAQLMCEGN 453 (708)
T ss_pred HHhC-CCchHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHH---HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcC
Q ss_pred cHHHHHH
Q 000177 701 GLQKLLG 707 (1922)
Q Consensus 701 GLrkL~N 707 (1922)
||+.|+.
T Consensus 454 gL~~L~~ 460 (708)
T PF05804_consen 454 GLQSLMK 460 (708)
T ss_pred cHHHHHH
No 481
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.57 E-value=9.8 Score=49.83 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCccccccCCCCcc-hhhhhhccCCCCc-ccccC
Q 000177 1849 DGDGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVDYD---GGGGLLEIVTEGDEDE-DSQLVESLSSGDE-EDFIG 1921 (1922)
Q Consensus 1849 dGDdDsDDDDddDDDDDDDeEEDDDDDDgD~~~ddeD~d---gg~~~~ei~~d~dedD-d~~~~e~~~~~de-~~~~~ 1921 (1922)
++++++..++.++.+.+++++.+|++.++|...++.+.+ .....+..+..-||+. +.++.++...+++ ..|-|
T Consensus 380 e~~~~dk~d~~ed~~m~ied~~~de~~~~EE~~ds~~~~~~~~~~~d~~~D~~~dee~re~~e~~k~~ker~e~~fPD 457 (754)
T KOG1980|consen 380 EEEESDKEDDNEDTEMEIEDEFEDEDSDEEELRDSIEAGGTEAEESDGFYDESSDEEARESEELEKYQKEREESEFPD 457 (754)
T ss_pred CcccccccccccchhhhhhhhhhhccccchhhhccccccccchhhccccccccchhhHHhHHHHHHHHHHhHhhhCCC
No 482
>PRK13684 Ycf48-like protein; Provisional
Probab=40.45 E-value=8.3e+02 Score=30.52 Aligned_cols=168 Identities=10% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc----
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC---- 1595 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh---- 1595 (1922)
++..+...+..|.|..=+=.-..-......-...++.+ .+.+++.+++++..|.+..=.-.. ++........
T Consensus 141 ~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i--~~~~~g~~v~~g~~G~i~~s~~~g--g~tW~~~~~~~~~~ 216 (334)
T PRK13684 141 GPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNL--RRSPDGKYVAVSSRGNFYSTWEPG--QTAWTPHQRNSSRR 216 (334)
T ss_pred CCCcceeeeccceEEEECCCCCCceeCcCCCcceEEEE--EECCCCeEEEEeCCceEEEEcCCC--CCeEEEeeCCCccc
Q ss_pred -eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc---EEEEcCCC
Q 000177 1596 -KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG---ILWDRRNS 1671 (1922)
Q Consensus 1596 -~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---rLWDlrtg 1671 (1922)
+.+.+.++++.+++ +..|.+.+=....|........+.... .+....+.|.|++.+++.+. .++....|
T Consensus 217 l~~i~~~~~g~~~~v----g~~G~~~~~s~d~G~sW~~~~~~~~~~---~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G 289 (334)
T PRK13684 217 LQSMGFQPDGNLWML----ARGGQIRFNDPDDLESWSKPIIPEITN---GYGYLDLAYRTPGEIWAGGGNGTLLVSKDGG 289 (334)
T ss_pred ceeeeEcCCCCEEEE----ecCCEEEEccCCCCCccccccCCcccc---ccceeeEEEcCCCCEEEEcCCCeEEEeCCCC
Q ss_pred cceeee---ccCCCce-EEEEecCCCEEEEE
Q 000177 1672 VPVHRF---DQFTDHG-GGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1672 k~I~kf---~gh~~~V-sVaFSPdG~~LASG 1698 (1922)
+.-... ....... .+.|..+++.+++|
T Consensus 290 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G 320 (334)
T PRK13684 290 KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG 320 (334)
T ss_pred CCCeECCcCCCCCcceEEEEEeCCCceEEEC
No 483
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=40.09 E-value=26 Score=45.37 Aligned_cols=58 Identities=24% Similarity=0.356 Sum_probs=0.0
Q ss_pred CCCCCCCCCcCccCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000177 1820 SDPDDAESDEEDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDG 1877 (1922)
Q Consensus 1820 eDdEDedDeDDDEDDDDDEDdD~il~~~~dGDdDsDDDDddDDDDDDDeEEDDDDDDg 1877 (1922)
.++.+++++++++..||+++.|..+....+.++-.++.|.++.|.++++.+.|+...+
T Consensus 448 ~e~~~~edd~~d~~~de~~e~Dedf~~~~~~d~vaee~dS~~~ds~~~eg~S~~~~k~ 505 (615)
T KOG0526|consen 448 AEDRDEEDDSDDSSTDEDEEEDEDFKPGEEDDDVAEEFDSDEADSSDEEGDSDEPKKE 505 (615)
T ss_pred cccchhhhcccccccccchhhhhhcccCccccccccccCCcccccccccCCccccccc
No 484
>PHA02608 67 prohead core protein; Provisional
Probab=39.97 E-value=19 Score=35.63 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000177 1846 ADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGDFM 1880 (1922)
Q Consensus 1846 ~~~dGDdDsDDDDddDDDDDDDeEEDDDDDDgD~~ 1880 (1922)
++.+.++++++++++++++.++-+++++++|++++
T Consensus 46 EGEe~ed~ddd~~~d~~~~~~~k~~dd~~dDedDE 80 (80)
T PHA02608 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80 (80)
T ss_pred cCCCCccccchhhhhhhcccccccccccccccccC
No 485
>PF05793 TFIIF_alpha: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); InterPro: IPR008851 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II [].; GO: 0003677 DNA binding, 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1F3U_F 1NHA_A 1I27_A 1J2X_A 2K7L_A 1ONV_A.
Probab=39.73 E-value=9.7 Score=50.14 Aligned_cols=100 Identities=22% Similarity=0.297 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcCccCCCCCcCCC---------------cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000177 1819 DSDPDDAESDEEDEEDDDDVDVD---------------PLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDD 1883 (1922)
Q Consensus 1819 DeDdEDedDeDDDEDDDDDEDdD---------------~il~~~~dGDdDsDDDDddDDDDDDDeEEDDDDDDgD~~~dd 1883 (1922)
+.+++++.+.++.+.++++++.. ..-...-..+.|++.++.+.||.|+++-|.|-.+|++....+
T Consensus 215 ~~~~~~~~~~~~~~~~~ed~~~~~~~~K~~~~~k~~k~~~d~k~~k~~~D~ea~e~esddGDdEg~E~dY~SD~ss~e~d 294 (527)
T PF05793_consen 215 DEEDDDEMDSDESDDDDEDDEEEKKKKKKKKKGKGKKKEDDEKKKKKGSDDEAFEFESDDGDDEGREVDYMSDSSSSEED 294 (527)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccchhccccccccccccchhhcccccchhhhhcchhccchhhhcccccccccccccc
Q ss_pred CCCCCCCCccccccCCCCcchhhhhhccCCCCccc
Q 000177 1884 VDYDGGGGLLEIVTEGDEDEDSQLVESLSSGDEED 1918 (1922)
Q Consensus 1884 eD~dgg~~~~ei~~d~dedDd~~~~e~~~~~de~~ 1918 (1922)
.+++....-.|....++++.++++.|+++++.+++
T Consensus 295 ~ee~e~~~~eE~~~k~e~~~de~d~e~e~e~~~~e 329 (527)
T PF05793_consen 295 EEEDEDVKSEEEEEKGEDEQDEDDEESEEEDKEDE 329 (527)
T ss_dssp -----------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
No 486
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=38.82 E-value=1.9e+02 Score=37.82 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred eEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEeccc---------eeEEEcCCC------CEEEEeecCC----
Q 000177 1555 TLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEGC---------KAARFSNSG------NLFAALPTET---- 1614 (1922)
Q Consensus 1555 tsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~gh---------~sVaFSPDG------~~LaSgS~~S---- 1614 (1922)
+.| .|.|||++|++-. .|.|++++-.......+..+... ..++|+|+- .+|... .
T Consensus 33 w~m--aflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs---yt~~~ 107 (454)
T TIGR03606 33 WAL--LWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS---YTYKN 107 (454)
T ss_pred eEE--EEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE---EeccC
Q ss_pred ------CCCeEEEEECC--CCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1615 ------SDRGILLYDIQ--TYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1615 ------~DgtIrIWDlr--Tgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
....|.-|.+. +......-.--........|....+.|.|||.++++.|
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~G 164 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIG 164 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEEC
No 487
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=38.56 E-value=9.5e+02 Score=33.77 Aligned_cols=143 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccC-------------------CCCeeEEEeeecCCCcEEEEec--------
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSH-------------------QAPVTLVQSHLSGETQLLLSSS-------- 1572 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gH-------------------ss~VtsLq~afSpDG~lLaSSs-------- 1572 (1922)
++..|+.++.|+.|.-.|..+|+....|..+ +++-.-. ++.+++.+.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~------~g~VIvG~~v~d~~~~~ 332 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA------GTTVVIGGRVADNYSTD 332 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEE------CCEEEEEeccccccccc
Q ss_pred --CCcEEEeccCCCCCCcceEeccc----------------------eeEEEcCCCCEEEEeecCC--------------
Q 000177 1573 --SQDVHLWNASSIAGGPMHSFEGC----------------------KAARFSNSGNLFAALPTET-------------- 1614 (1922)
Q Consensus 1573 --DgtVkLWDl~t~~gk~l~tf~gh----------------------~sVaFSPDG~~LaSgS~~S-------------- 1614 (1922)
+|.|+-+|.++ ++.+..+... ...++.+....++.+....
T Consensus 333 ~~~G~I~A~Da~T--Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n 410 (764)
T TIGR03074 333 EPSGVIRAFDVNT--GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADE 410 (764)
T ss_pred CCCcEEEEEECCC--CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcc
Q ss_pred -CCCeEEEEECCCCceeeeeccccccccCCCCc----------ceEEEEcC-CCC---eEeecc-----EEEEcCCCcce
Q 000177 1615 -SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA----------YSQIHFSP-SDT---MLLWNG-----ILWDRRNSVPV 1674 (1922)
Q Consensus 1615 -~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~----------~~vVaFSP-dG~---lLaSgg-----rLWDlrtgk~I 1674 (1922)
..+.|.-.|.+||+....+. .-|. ...+.+.. +|+ .++... .++|.++|+++
T Consensus 411 ~y~~slvALD~~TGk~~W~~Q--------~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 411 KYSSSLVALDATTGKERWVFQ--------TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred cccceEEEEeCCCCceEEEec--------ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Q ss_pred eeec
Q 000177 1675 HRFD 1678 (1922)
Q Consensus 1675 ~kf~ 1678 (1922)
..+.
T Consensus 483 ~~~~ 486 (764)
T TIGR03074 483 VPVE 486 (764)
T ss_pred eece
No 488
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=38.50 E-value=25 Score=43.45 Aligned_cols=51 Identities=29% Similarity=0.592 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCccccccCCCCc-chhhhhhcc
Q 000177 1852 GDSEGDDLSNSDEDDSVSDLDDED--DGDFMMDDVDYDGGGGLLEIVTEGDED-EDSQLVESL 1911 (1922)
Q Consensus 1852 dDsDDDDddDDDDDDDeEEDDDDD--DgD~~~ddeD~dgg~~~~ei~~d~ded-Dd~~~~e~~ 1911 (1922)
+.+|++|+-+.+++|++.-.|+.| ..++...++|+| ++++++ ||++++|+.
T Consensus 259 sS~d~~D~a~~EEeD~~k~~d~sd~~sse~~eneed~D---------ed~e~e~ddEE~~e~~ 312 (542)
T KOG0699|consen 259 SSSDGVDGAATEEEDEVKSPDDSDAESSEFVENEEDDD---------EDAEDEQDDEEMVEGS 312 (542)
T ss_pred CcccccccccccccccccCCcccccccchhcccccccc---------cccccccchhhhhhhc
No 489
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=38.41 E-value=40 Score=46.60 Aligned_cols=73 Identities=15% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhccccchhhh
Q 000177 541 EKYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLL 620 (1922)
Q Consensus 541 q~~~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gGlq~LL 620 (1922)
|++||+-+..+--||+|+.-+...+.+-++|++||......+. +|..|-||...-|++-+=.++||+.-||
T Consensus 1789 q~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~PS~R~~---------vL~vLYAL~S~~~i~keA~~hg~l~yil 1859 (2235)
T KOG1789|consen 1789 QILALQVILLATANKECVTDLATCNVLTTLLTLLHSQPSMRAR---------VLDVLYALSSNGQIGKEALEHGGLMYIL 1859 (2235)
T ss_pred HHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcChHHHHH---------HHHHHHHHhcCcHHHHHHHhcCchhhhh
Q ss_pred cc
Q 000177 621 AV 622 (1922)
Q Consensus 621 ~v 622 (1922)
.+
T Consensus 1860 ~~ 1861 (2235)
T KOG1789|consen 1860 SI 1861 (2235)
T ss_pred HH
No 490
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.35 E-value=3.6e+02 Score=38.65 Aligned_cols=235 Identities=9% Similarity=0.071 Sum_probs=0.0
Q ss_pred CcEEEEecCCcEEEeccCC--------------CCCCcceEeccc-----eeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1565 TQLLLSSSSQDVHLWNASS--------------IAGGPMHSFEGC-----KAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1565 G~lLaSSsDgtVkLWDl~t--------------~~gk~l~tf~gh-----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
+.+++++..+.+.++-... .+..+..++.-+ ..+...+|+...++..... +-.|..||++
T Consensus 54 sl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsn-g~~v~~fD~~ 132 (1405)
T KOG3630|consen 54 SLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSN-GEAVYSFDLE 132 (1405)
T ss_pred ceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecC-CceEEEEehH
Q ss_pred CCceeeeeccccccccCCCCcceE----EEEcCCCCeEeecc------EEEEcC-CCcceeeeccCCCceEEEEecCCCE
Q 000177 1626 TYQLEAKLSDTSVNLTGRGHAYSQ----IHFSPSDTMLLWNG------ILWDRR-NSVPVHRFDQFTDHGGGGFHPAGNE 1694 (1922)
Q Consensus 1626 Tgk~i~tL~d~s~~~~~~gh~~~v----VaFSPdG~lLaSgg------rLWDlr-tgk~I~kf~gh~~~VsVaFSPdG~~ 1694 (1922)
+-..........+..........+ +.|+|.=..-.... .+.-+. ..+.+.+|..-....+++|+|.|+.
T Consensus 133 ~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQ 212 (1405)
T KOG3630|consen 133 EFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQ 212 (1405)
T ss_pred hhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccce
Q ss_pred EEEEe----EEEecCCCeEEEEEcCCCc------eeEEEccCCCEEEEEEc-cCchhhhhhhcccccccCCcceEEEEec
Q 000177 1695 VIINS----EVWDLRKFRLLRSVPSLDQ------TTITFNARGDVIYAILR-RNLEDVMSAVHTRRVKHPLFAAFRTVDA 1763 (1922)
Q Consensus 1695 LASGS----eIWDLrTgklL~tl~gH~~------~sVaFSPdG~~LaSgs~-~d~~dv~s~lh~rr~ksp~~ssFrt~Da 1763 (1922)
+++|- .+-=.-+++....+++... .+|.|-..-.+++.... ...++--......-.+.....++.+...
T Consensus 213 l~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n~ts~~~dpd~y~~~~~k~kp~g~~nF~E~ 292 (1405)
T KOG3630|consen 213 LFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYGNVTSETDDPDSYDQKMYKIKPDGSANFQET 292 (1405)
T ss_pred eeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEecccccCcCCchhhhhccccccCcceeeeccc
Q ss_pred CCCce----eeeeccCCceEEEEEcCCCceEEEEecCCCCC
Q 000177 1764 INYSD----IATIPVDRCVLDFATERTDSFVGLITMDDQED 1800 (1922)
Q Consensus 1764 ~dys~----IaTidvkr~I~dLa~SPdds~LAVVe~dds~d 1800 (1922)
.+..+ +........++-..|.+.+..+.|+....+.+
T Consensus 293 ~d~tppfg~~~rq~h~y~~~L~~W~~~~~~vVvvansaSsE 333 (1405)
T KOG3630|consen 293 FDITPPFGQIVRQPHMYKVTLSGWIEPDANVVVVANSASSE 333 (1405)
T ss_pred cCCCCCccccCccchhHHHhhhhhcccccceEEEecccccc
No 491
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=37.52 E-value=31 Score=50.10 Aligned_cols=105 Identities=24% Similarity=0.336 Sum_probs=0.0
Q ss_pred EecCCCCCCCCCCCCCCCCCcCccCC-CCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCC--------CCC--CCCCC
Q 000177 1809 EIGRRRPTEDDSDPDDAESDEEDEED-DDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVS--------DLD--DEDDG 1877 (1922)
Q Consensus 1809 EVGr~r~~EDDeDdEDedDeDDDEDD-DDDEDdD~il~~~~dGDdDsDDDDddDDDDDDDeE--------EDD--DDDDg 1877 (1922)
+.....++.++-|-.++---|+.++| +.|.|..+. +.+.+|++.++-|.+.|+--.|+| |+| -||+.
T Consensus 3976 n~~~~~pe~e~ldlpedl~ld~~~~d~~~d~dl~dm--dme~~den~eead~e~dep~~ded~~e~~~tlded~~~dd~~ 4053 (4600)
T COG5271 3976 NNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDM--DMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFS 4053 (4600)
T ss_pred ccCCCCCccccCCCchhcCCccccccccccCChhhc--cchhcccchhhcccccCCCCCCCCccccccccchhhccchhh
Q ss_pred CCCCCCCCCCCCCCccccccCCCCc--chhhhhhccCCCCc
Q 000177 1878 DFMMDDVDYDGGGGLLEIVTEGDED--EDSQLVESLSSGDE 1916 (1922)
Q Consensus 1878 D~~~ddeD~dgg~~~~ei~~d~ded--Dd~~~~e~~~~~de 1916 (1922)
|.-.||+-++ ++|-+|-+-+++|. |+--.+|+-+.|++
T Consensus 4054 dla~dd~k~n-edg~ee~~~~nee~~~~~~~~de~~eqg~~ 4093 (4600)
T COG5271 4054 DLAEDDEKMN-EDGFEENVQENEESTEDGVKSDEELEQGEV 4093 (4600)
T ss_pred hhhccccccc-ccchhhhhhcchhhhhccccchhhHhccCC
No 492
>PTZ00482 membrane-attack complex/perforin (MACPF) Superfamily; Provisional
Probab=37.36 E-value=38 Score=46.71 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred ecCCCCCCCCCCCCCCCCCcCccCC-CCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------
Q 000177 1810 IGRRRPTEDDSDPDDAESDEEDEED-DDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDED------------- 1875 (1922)
Q Consensus 1810 VGr~r~~EDDeDdEDedDeDDDEDD-DDDEDdD~il~~~~dGDdDsDDDDddDDDDDDDeEEDDDDD------------- 1875 (1922)
+..+...++++|+|.+..-+|||+| ++.-.++...++...-+-.+.+.+.+..+.-|...+.+.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (844)
T PTZ00482 80 LNQRKSLDDDDDDEFDFLYEDDEDDAGNATSGESSTDDDSLLELPDRDEDADTQANNDQTNDFDQDDSSNSQTDQGLKQS 159 (844)
T ss_pred hhhhcccccCcchhhhhhccccccCccccCCCcccccccccccCcccCcccccccccccccccccccccccccchhhhhc
Q ss_pred ------CCCCCCCCCCCCCCCCccccccCCCCcch--------------hhhhhccCCCCccccc
Q 000177 1876 ------DGDFMMDDVDYDGGGGLLEIVTEGDEDED--------------SQLVESLSSGDEEDFI 1920 (1922)
Q Consensus 1876 ------DgD~~~ddeD~dgg~~~~ei~~d~dedDd--------------~~~~e~~~~~de~~~~ 1920 (1922)
+....++..+-+.=-+.-.+.+++++..+ ++.++..|++++|.|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 224 (844)
T PTZ00482 160 VNLSSAEKLIEEKKGQTENTFKFYNFGNDGEEAAAKDGGKSKSSDPGPLNDSDGQGDDGDPESAE 224 (844)
T ss_pred ccchhhhhhhhhccccchhhhceeccCCCCccccccCCcccccCCCCCCCCCcCccccCCCCchh
No 493
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=36.53 E-value=5.6e+02 Score=33.21 Aligned_cols=157 Identities=11% Similarity=0.079 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEe
Q 000177 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSF 1592 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf 1592 (1922)
+.+.+-|+|.++++--..|.++++- .+.+..- .....-..++.+.++.+-+.--.. ....+
T Consensus 70 ~~~~~lP~G~~~v~er~~G~l~~i~-------------~g~~~~~--~~~~~~~~~~~~~~Gll~~al~~~----fa~~~ 130 (399)
T COG2133 70 WGLARLPDGVLLVTERPTGRLRLIS-------------DGGSASP--PVSTVPIVLLRGQGGLLDIALSPD----FAQGR 130 (399)
T ss_pred hhheecCCceEEEEccCCccEEEec-------------CCCcccc--cccccceEEeccCCCccceEeccc----ccccc
Q ss_pred ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC-ceeeeeccccccccCCC-CcceEEEEcCCCCeEeecc-------
Q 000177 1593 EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTY-QLEAKLSDTSVNLTGRG-HAYSQIHFSPSDTMLLWNG------- 1663 (1922)
Q Consensus 1593 ~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~s~~~~~~g-h~~~vVaFSPdG~lLaSgg------- 1663 (1922)
.....+++..++-+.++. +-++.+..+ ..+.............+ |....+.|+|||+++++.|
T Consensus 131 ~~~~~~a~~~~~~~~~n~--------~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~ 202 (399)
T COG2133 131 LVYFGISEPGGGLYVANR--------VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPAL 202 (399)
T ss_pred eeeeEEEeecCCceEEEE--------EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCccc
Q ss_pred ---------EEEEcC-----------CCcceeeeccCCCceEEEEecC-CCEEEE
Q 000177 1664 ---------ILWDRR-----------NSVPVHRFDQFTDHGGGGFHPA-GNEVII 1697 (1922)
Q Consensus 1664 ---------rLWDlr-----------tgk~I~kf~gh~~~VsVaFSPd-G~~LAS 1697 (1922)
++|.+. .+..|..+ +|.+.+.++|+|- |...++
T Consensus 203 aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~-G~RN~qGl~w~P~tg~Lw~~ 256 (399)
T COG2133 203 AQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSY-GHRNPQGLAWHPVTGALWTT 256 (399)
T ss_pred ccCccccccceeeeccCcccccCCCCCCcceEEe-ccCCccceeecCCCCcEEEE
No 494
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.52 E-value=3.4e+02 Score=35.33 Aligned_cols=167 Identities=10% Similarity=0.072 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCcceeecccccceecccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 000177 1454 VCPEPKRSLDAPSNVTARLGTREFKSTYSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKEL 1533 (1922)
Q Consensus 1454 ~CPePk~~lsAP~N~aaRl~sr~l~~~~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtI 1533 (1922)
+|.-| -..++..--.++.++....|....+...-+. .--|+..-.... ++|.++.||+|.+.||+--.+.+|
T Consensus 19 fcnip-----esngvFfDDaNkqlfavrSggatgvvvkgpn--dDVpiSfdm~d~-G~I~SIkFSlDnkilAVQR~~~~v 90 (657)
T KOG2377|consen 19 FCNIP-----ESNGVFFDDANKQLFAVRSGGATGVVVKGPN--DDVPISFDMDDK-GEIKSIKFSLDNKILAVQRTSKTV 90 (657)
T ss_pred hccCC-----cccceeeccCcceEEEEecCCeeEEEEeCCC--CCCCceeeecCC-CceeEEEeccCcceEEEEecCceE
Q ss_pred EEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEE
Q 000177 1534 KIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLF 1607 (1922)
Q Consensus 1534 kIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~L 1607 (1922)
.+++....+....+ ++..+..+-+-|.|+.+ .-++--.+.-+-+|-+.. ....++..+.+ +...|.++-+.+
T Consensus 91 ~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~p-ekrslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 91 DFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLP-EKRSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred EEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEch-hhhhhhhhhhcccCccEEEEccccceE
Q ss_pred EEeecCCCCCeEEEEECCCCceee
Q 000177 1608 AALPTETSDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1608 aSgS~~S~DgtIrIWDlrTgk~i~ 1631 (1922)
+.+ .+-..+++.=+-++++...+
T Consensus 169 LL~-t~~~~n~lnpf~~~~~~v~k 191 (657)
T KOG2377|consen 169 LLS-TTVLENVLNPFHFRAGTMSK 191 (657)
T ss_pred eee-ccccccccccEEEeeceeee
No 495
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=35.88 E-value=7.9 Score=43.63 Aligned_cols=64 Identities=27% Similarity=0.332 Sum_probs=0.0
Q ss_pred CccCCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCc
Q 000177 1830 EDEEDDDDVDVDPLLGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVTEGDED 1902 (1922)
Q Consensus 1830 DDEDDDDDEDdD~il~~~~dGDdDsDDDDddDDDDDDDeEEDDDDDDgD~~~ddeD~dgg~~~~ei~~d~ded 1902 (1922)
.++++++|+.+| ++.++++++++++++++++++|++.|.+...+++.........++.-..|+|
T Consensus 1 ~~~~~~~dg~dd---------~~~~~~d~d~~~~dee~~~~~d~~~d~~~~~e~e~~~~~~~~~~~~~~~e~d 64 (170)
T PF04050_consen 1 GSDSDDDDGEDD---------EESDEEDEDDDSEDEEEEDDEDDESDEESEDEEEEVVVRREREEEDPEEEED 64 (170)
T ss_dssp ------------------------------------------------------------------S--HHHH
T ss_pred CCccccccCCcc---------ccccccccCcccccccccccccccccccccccchhhhhcccccccCcchHHH
No 496
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=35.59 E-value=31 Score=42.57 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 000177 1845 GADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVDYDGGGGLLE 1894 (1922)
Q Consensus 1845 ~~~~dGDdDsDDDDddDDDDDDDeEEDDDDDDgD~~~ddeD~dgg~~~~e 1894 (1922)
+..+.+++|++|+++++++.+++++-..+|||++ .|.++-..|+|+-|
T Consensus 255 g~~~~~eE~e~Eee~~~~~~~~dee~~n~Dd~D~--~EeeplnsedDvsd 302 (348)
T KOG2652|consen 255 GTGDTSEEDENEEEDDDPDPDEDEELGNSDDDDG--VEEEPLNSEDDVSD 302 (348)
T ss_pred ccccccccccccccccCcccchhhhcccccccCc--cccccccCcccccc
No 497
>PF03985 Paf1: Paf1 ; InterPro: IPR007133 Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i [, ].
Probab=35.03 E-value=39 Score=43.66 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcchhhhhhccCCCCccc
Q 000177 1844 LGADLDGDGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVDYDGGGGLLEIVTEGDEDEDSQLVESLSSGDEED 1918 (1922)
Q Consensus 1844 l~~~~dGDdDsDDDDddDDDDDDDeEEDDDDDDgD~~~ddeD~dgg~~~~ei~~d~dedDd~~~~e~~~~~de~~ 1918 (1922)
++....+..++++++.+++.+.+++++++++++++...++++.++.. +-.++.++++++...++.+++++.|
T Consensus 365 ~dp~~~~~~ee~eeeee~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~s~~~~~ 436 (436)
T PF03985_consen 365 LDPIEYEEEEEEEEEEEEEEEEEEEEEEEDDEEEEESDSDEEESEEE---SESDEEDSDEESPSKEESASDSESD 436 (436)
T ss_pred ccCCCccccCccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccCC
No 498
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=35.00 E-value=13 Score=41.30 Aligned_cols=33 Identities=15% Similarity=0.453 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000177 1851 DGDSEGDDLSNSDEDDSVSDLDDEDDGDFMMDD 1883 (1922)
Q Consensus 1851 DdDsDDDDddDDDDDDDeEEDDDDDDgD~~~dd 1883 (1922)
.++.+.+++++++++++++|||++++++...+.
T Consensus 110 ~~d~~~~e~d~ee~~dee~deeddeeee~~ee~ 142 (149)
T PF03066_consen 110 EEDEESEEEDDEEDEDEEDDEEDDEEEEEEEEE 142 (149)
T ss_dssp ---------------------------------
T ss_pred cccccccccchhhhccccccccccccccccccc
No 499
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=34.97 E-value=13 Score=41.30 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000177 1854 SEGDDLSNSDEDDSVSDLDDEDDGDFMMDDVDY 1886 (1922)
Q Consensus 1854 sDDDDddDDDDDDDeEEDDDDDDgD~~~ddeD~ 1886 (1922)
.++++.+++|++++++|++||||++.+.+.++.
T Consensus 110 ~~d~~~~e~d~ee~~dee~deeddeeee~~ee~ 142 (149)
T PF03066_consen 110 EEDEESEEEDDEEDEDEEDDEEDDEEEEEEEEE 142 (149)
T ss_dssp ---------------------------------
T ss_pred cccccccccchhhhccccccccccccccccccc
No 500
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=34.93 E-value=23 Score=44.97 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhhhhHHHHhccccchhhhcc
Q 000177 590 LPDVMKLICALAAHRKFAALFVDRGGMQKLLAV 622 (1922)
Q Consensus 590 ~~eaLk~l~aLl~HkKfA~eFV~~gGlq~LL~v 622 (1922)
++-+.|.|-+++.|.....+||++|||+.||.+
T Consensus 337 I~~v~rFLea~fsN~~~C~~FVe~GGie~LLdL 369 (379)
T PF06025_consen 337 IFNVVRFLEAFFSNSDHCREFVEKGGIELLLDL 369 (379)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Done!